RGE_RS12770 317a55b7e07a65ff4b2f57f45d5d0723 460 Gene3D G3DSA:3.90.1150.10 7 68 2.8E-46 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS12770 317a55b7e07a65ff4b2f57f45d5d0723 460 Gene3D G3DSA:3.90.1150.10 345 448 2.8E-46 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS12770 317a55b7e07a65ff4b2f57f45d5d0723 460 Pfam PF00202 Aminotransferase class-III 34 446 4.3E-99 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS12770 317a55b7e07a65ff4b2f57f45d5d0723 460 PANTHER PTHR11986:SF81 35 454 2.0E-147 T 26-04-2016 RGE_RS12770 317a55b7e07a65ff4b2f57f45d5d0723 460 Gene3D G3DSA:3.40.640.10 70 342 3.4E-81 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS12770 317a55b7e07a65ff4b2f57f45d5d0723 460 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 256 293 - T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS12770 317a55b7e07a65ff4b2f57f45d5d0723 460 SUPERFAMILY SSF53383 14 447 5.75E-122 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS12770 317a55b7e07a65ff4b2f57f45d5d0723 460 PIRSF PIRSF000521 33 448 5.6E-21 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS12770 317a55b7e07a65ff4b2f57f45d5d0723 460 PANTHER PTHR11986 35 454 2.0E-147 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS00400 c2b62cbd5247247dfb1522391b1cb432 166 Gene3D G3DSA:3.30.70.920 69 166 1.2E-30 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS00400 c2b62cbd5247247dfb1522391b1cb432 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 44 6.4E-15 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS00400 c2b62cbd5247247dfb1522391b1cb432 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 44 63 6.4E-15 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS00400 c2b62cbd5247247dfb1522391b1cb432 166 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 33 6.4E-15 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS00400 c2b62cbd5247247dfb1522391b1cb432 166 SMART SM00344 17 126 1.6E-42 T 26-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RGE_RS00400 c2b62cbd5247247dfb1522391b1cb432 166 SUPERFAMILY SSF54909 78 166 3.62E-20 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS00400 c2b62cbd5247247dfb1522391b1cb432 166 PANTHER PTHR30154:SF0 10 166 6.2E-76 T 26-04-2016 RGE_RS00400 c2b62cbd5247247dfb1522391b1cb432 166 Gene3D G3DSA:1.10.10.10 15 68 3.1E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00400 c2b62cbd5247247dfb1522391b1cb432 166 Pfam PF01037 Lrp/AsnC ligand binding domain 83 157 5.0E-20 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS00400 c2b62cbd5247247dfb1522391b1cb432 166 SUPERFAMILY SSF46785 16 76 2.95E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00400 c2b62cbd5247247dfb1522391b1cb432 166 Pfam PF13412 Winged helix-turn-helix DNA-binding 17 63 1.6E-19 T 26-04-2016 RGE_RS00400 c2b62cbd5247247dfb1522391b1cb432 166 PANTHER PTHR30154 10 166 6.2E-76 T 26-04-2016 RGE_RS09070 32cac9c6781e90fc6f21fb1f9e37d54b 353 PANTHER PTHR11732:SF112 153 352 7.9E-123 T 26-04-2016 RGE_RS09070 32cac9c6781e90fc6f21fb1f9e37d54b 353 PANTHER PTHR11732:SF112 1 135 7.9E-123 T 26-04-2016 RGE_RS09070 32cac9c6781e90fc6f21fb1f9e37d54b 353 Pfam PF00248 Aldo/keto reductase family 15 344 1.1E-68 T 26-04-2016 IPR023210 NADP-dependent oxidoreductase domain RGE_RS09070 32cac9c6781e90fc6f21fb1f9e37d54b 353 Gene3D G3DSA:3.20.20.100 1 349 3.1E-101 T 26-04-2016 IPR023210 NADP-dependent oxidoreductase domain RGE_RS09070 32cac9c6781e90fc6f21fb1f9e37d54b 353 SUPERFAMILY SSF51430 1 349 6.68E-99 T 26-04-2016 IPR023210 NADP-dependent oxidoreductase domain RGE_RS09070 32cac9c6781e90fc6f21fb1f9e37d54b 353 PANTHER PTHR11732 153 352 7.9E-123 T 26-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RGE_RS09070 32cac9c6781e90fc6f21fb1f9e37d54b 353 PANTHER PTHR11732 1 135 7.9E-123 T 26-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RGE_RS05655 9a30751c2d015b9c940616befa4dd862 315 Pfam PF02574 Homocysteine S-methyltransferase 17 312 7.0E-77 T 26-04-2016 IPR003726 Homocysteine-binding domain RGE_RS05655 9a30751c2d015b9c940616befa4dd862 315 Gene3D G3DSA:3.20.20.330 9 313 2.4E-102 T 26-04-2016 IPR003726 Homocysteine-binding domain RGE_RS05655 9a30751c2d015b9c940616befa4dd862 315 PANTHER PTHR21091:SF123 1 313 1.2E-114 T 26-04-2016 RGE_RS05655 9a30751c2d015b9c940616befa4dd862 315 PANTHER PTHR21091 1 313 1.2E-114 T 26-04-2016 RGE_RS05655 9a30751c2d015b9c940616befa4dd862 315 SUPERFAMILY SSF82282 14 313 3.27E-89 T 26-04-2016 IPR003726 Homocysteine-binding domain RGE_RS21960 8be1f835442f746140597f26f620125c 429 SUPERFAMILY SSF103473 28 421 7.15E-13 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS21960 8be1f835442f746140597f26f620125c 429 PANTHER PTHR11328 51 420 1.0E-12 T 26-04-2016 RGE_RS21960 8be1f835442f746140597f26f620125c 429 Pfam PF13347 MFS/sugar transport protein 25 418 1.9E-44 T 26-04-2016 RGE_RS11495 0cecd6b5e306dfe4cd8cc02c9c335b22 394 PANTHER PTHR23517 44 389 3.5E-16 T 26-04-2016 RGE_RS11495 0cecd6b5e306dfe4cd8cc02c9c335b22 394 Gene3D G3DSA:1.20.1250.20 219 386 2.2E-20 T 26-04-2016 RGE_RS11495 0cecd6b5e306dfe4cd8cc02c9c335b22 394 Gene3D G3DSA:1.20.1250.20 16 195 6.0E-13 T 26-04-2016 RGE_RS11495 0cecd6b5e306dfe4cd8cc02c9c335b22 394 SUPERFAMILY SSF103473 14 386 2.75E-41 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS11495 0cecd6b5e306dfe4cd8cc02c9c335b22 394 Pfam PF07690 Major Facilitator Superfamily 20 189 3.1E-14 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS11495 0cecd6b5e306dfe4cd8cc02c9c335b22 394 Pfam PF07690 Major Facilitator Superfamily 221 384 3.2E-16 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 PRINTS PR00987 Glutamyl-tRNA synthetase signature 19 30 7.4E-14 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 PRINTS PR00987 Glutamyl-tRNA synthetase signature 5 17 7.4E-14 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 PRINTS PR00987 Glutamyl-tRNA synthetase signature 177 187 7.4E-14 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 PRINTS PR00987 Glutamyl-tRNA synthetase signature 34 47 7.4E-14 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 PRINTS PR00987 Glutamyl-tRNA synthetase signature 193 201 7.4E-14 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 2 267 3.8E-114 T 26-04-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 PANTHER PTHR11451:SF35 2 228 6.9E-85 T 26-04-2016 RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 244 1.1E-43 T 26-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 2 294 41.579 T 26-04-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 SUPERFAMILY SSF52374 2 250 1.34E-82 T 26-04-2016 RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 Gene3D G3DSA:3.40.50.620 2 66 8.8E-42 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 Gene3D G3DSA:3.40.50.620 179 228 8.8E-42 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 Gene3D G3DSA:3.90.800.10 67 177 9.1E-17 T 26-04-2016 RGE_RS06675 eef8d32849f3400cff5ebb6dd2ecd855 297 PANTHER PTHR11451 2 228 6.9E-85 T 26-04-2016 RGE_RS18010 3446029eba2660d1fcec623b4695f803 524 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 65 433 1.2E-83 T 26-04-2016 IPR000914 Solute-binding protein family 5 domain RGE_RS18010 3446029eba2660d1fcec623b4695f803 524 Gene3D G3DSA:3.90.76.10 32 185 6.5E-36 T 26-04-2016 RGE_RS18010 3446029eba2660d1fcec623b4695f803 524 Gene3D G3DSA:3.40.190.10 186 300 2.5E-31 T 26-04-2016 RGE_RS18010 3446029eba2660d1fcec623b4695f803 524 PIRSF PIRSF002741 10 523 3.2E-81 T 26-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RGE_RS18010 3446029eba2660d1fcec623b4695f803 524 SUPERFAMILY SSF53850 20 523 6.33E-124 T 26-04-2016 RGE_RS18010 3446029eba2660d1fcec623b4695f803 524 Gene3D G3DSA:3.10.105.10 301 494 2.8E-47 T 26-04-2016 RGE_RS18010 3446029eba2660d1fcec623b4695f803 524 PANTHER PTHR30290 22 521 9.6E-120 T 26-04-2016 RGE_RS18010 3446029eba2660d1fcec623b4695f803 524 PANTHER PTHR30290:SF24 22 521 9.6E-120 T 26-04-2016 RGE_RS15955 e2eb2361b551f7f443c4820329a70a17 335 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 36 327 1.8E-14 T 26-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RGE_RS15955 e2eb2361b551f7f443c4820329a70a17 335 SUPERFAMILY SSF51735 102 297 2.25E-51 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15955 e2eb2361b551f7f443c4820329a70a17 335 Gene3D G3DSA:3.40.50.720 1 113 4.8E-26 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15955 e2eb2361b551f7f443c4820329a70a17 335 PANTHER PTHR10996 1 319 7.6E-97 T 26-04-2016 RGE_RS15955 e2eb2361b551f7f443c4820329a70a17 335 Gene3D G3DSA:3.40.50.720 114 297 5.7E-58 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15955 e2eb2361b551f7f443c4820329a70a17 335 SUPERFAMILY SSF52283 1 136 2.02E-19 T 26-04-2016 RGE_RS15955 e2eb2361b551f7f443c4820329a70a17 335 PANTHER PTHR10996:SF127 1 319 7.6E-97 T 26-04-2016 RGE_RS15955 e2eb2361b551f7f443c4820329a70a17 335 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 296 7.2E-51 T 26-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RGE_RS21305 92ec0c2cf458de6c7a1b80fd07eb2d3d 296 SMART SM01091 211 289 2.2E-24 T 26-04-2016 IPR005170 Transporter-associated domain RGE_RS21305 92ec0c2cf458de6c7a1b80fd07eb2d3d 296 Gene3D G3DSA:3.30.465.10 186 287 1.8E-23 T 26-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RGE_RS21305 92ec0c2cf458de6c7a1b80fd07eb2d3d 296 Pfam PF03471 Transporter associated domain 213 285 2.3E-17 T 26-04-2016 IPR005170 Transporter-associated domain RGE_RS21305 92ec0c2cf458de6c7a1b80fd07eb2d3d 296 PANTHER PTHR22777 37 296 4.4E-92 T 26-04-2016 RGE_RS21305 92ec0c2cf458de6c7a1b80fd07eb2d3d 296 SUPERFAMILY SSF56176 210 291 2.02E-19 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS21305 92ec0c2cf458de6c7a1b80fd07eb2d3d 296 Pfam PF00571 CBS domain 87 129 4.0E-4 T 26-04-2016 IPR000644 CBS domain RGE_RS21305 92ec0c2cf458de6c7a1b80fd07eb2d3d 296 Pfam PF00571 CBS domain 142 191 8.1E-6 T 26-04-2016 IPR000644 CBS domain RGE_RS21305 92ec0c2cf458de6c7a1b80fd07eb2d3d 296 SUPERFAMILY SSF54631 63 201 6.06E-29 T 26-04-2016 RGE_RS21305 92ec0c2cf458de6c7a1b80fd07eb2d3d 296 Gene3D G3DSA:3.10.580.10 61 185 1.4E-18 T 26-04-2016 RGE_RS21305 92ec0c2cf458de6c7a1b80fd07eb2d3d 296 SMART SM00116 75 131 7.3 T 26-04-2016 IPR000644 CBS domain RGE_RS21305 92ec0c2cf458de6c7a1b80fd07eb2d3d 296 SMART SM00116 143 191 0.19 T 26-04-2016 IPR000644 CBS domain RGE_RS18390 abb0c071296ec1a17ac29040168bd4cf 252 Pfam PF00899 ThiF family 9 243 2.0E-60 T 26-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RGE_RS18390 abb0c071296ec1a17ac29040168bd4cf 252 SUPERFAMILY SSF69572 4 248 6.54E-83 T 26-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RGE_RS18390 abb0c071296ec1a17ac29040168bd4cf 252 PANTHER PTHR10953 3 250 1.9E-90 T 26-04-2016 RGE_RS18390 abb0c071296ec1a17ac29040168bd4cf 252 PANTHER PTHR10953:SF158 3 250 1.9E-90 T 26-04-2016 RGE_RS18390 abb0c071296ec1a17ac29040168bd4cf 252 Gene3D G3DSA:3.40.50.720 4 247 2.0E-71 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 Gene3D G3DSA:1.20.85.10 2 144 1.7E-64 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 TIGRFAM TIGR01115 pufM: photosynthetic reaction center M subunit 1 306 8.2E-176 T 26-04-2016 IPR005781 Photosynthetic reaction centre, M subunit GO:0019684|GO:0030077|GO:0045156 RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 196 222 - T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 PANTHER PTHR33149:SF2 76 224 3.0E-35 T 26-04-2016 RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 PANTHER PTHR33149 76 224 3.0E-35 T 26-04-2016 RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 SUPERFAMILY SSF81483 2 323 8.11E-134 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 Pfam PF00124 Photosynthetic reaction centre protein 52 304 1.6E-105 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 Gene3D G3DSA:1.20.85.10 145 300 2.4E-62 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 56 77 1.2E-53 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 202 228 1.2E-53 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 146 168 1.2E-53 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 113 141 1.2E-53 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16385 8238b40b51765673a5c14a8ec5ffed45 325 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 262 287 1.2E-53 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS03335 e36eb30c45bf7e41cbb1c2e6605863db 1931 Pfam PF07581 The GLUG motif 1079 1106 8.6E-4 T 26-04-2016 IPR011493 GLUG RGE_RS03335 e36eb30c45bf7e41cbb1c2e6605863db 1931 Pfam PF07581 The GLUG motif 1112 1133 7.9E-5 T 26-04-2016 IPR011493 GLUG RGE_RS03335 e36eb30c45bf7e41cbb1c2e6605863db 1931 Pfam PF07581 The GLUG motif 749 774 0.0024 T 26-04-2016 IPR011493 GLUG RGE_RS03335 e36eb30c45bf7e41cbb1c2e6605863db 1931 Pfam PF07581 The GLUG motif 1043 1069 1.4E-5 T 26-04-2016 IPR011493 GLUG RGE_RS03335 e36eb30c45bf7e41cbb1c2e6605863db 1931 PANTHER PTHR12338:SF6 1 423 1.2E-80 T 26-04-2016 RGE_RS03335 e36eb30c45bf7e41cbb1c2e6605863db 1931 Pfam PF05860 haemagglutination activity domain 72 167 5.7E-22 T 26-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RGE_RS03335 e36eb30c45bf7e41cbb1c2e6605863db 1931 SUPERFAMILY SSF51126 47 341 7.85E-48 T 26-04-2016 IPR011050 Pectin lyase fold/virulence factor RGE_RS03335 e36eb30c45bf7e41cbb1c2e6605863db 1931 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 90 163 3.6E-22 T 26-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RGE_RS03335 e36eb30c45bf7e41cbb1c2e6605863db 1931 Gene3D G3DSA:2.160.20.10 85 314 1.4E-19 T 26-04-2016 IPR012334 Pectin lyase fold RGE_RS03335 e36eb30c45bf7e41cbb1c2e6605863db 1931 PANTHER PTHR12338 1 423 1.2E-80 T 26-04-2016 RGE_RS03335 e36eb30c45bf7e41cbb1c2e6605863db 1931 SMART SM00912 56 168 1.2E-34 T 26-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RGE_RS09225 803966c2b5682477570a14f3bc7cfba1 670 PANTHER PTHR30509 297 637 9.0E-95 T 26-04-2016 RGE_RS09225 803966c2b5682477570a14f3bc7cfba1 670 PANTHER PTHR30509 1 232 9.0E-95 T 26-04-2016 RGE_RS09225 803966c2b5682477570a14f3bc7cfba1 670 Pfam PF04632 Fusaric acid resistance protein family 2 655 8.2E-132 T 26-04-2016 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 RGE_RS09225 803966c2b5682477570a14f3bc7cfba1 670 PANTHER PTHR30509:SF1 297 637 9.0E-95 T 26-04-2016 RGE_RS09225 803966c2b5682477570a14f3bc7cfba1 670 PANTHER PTHR30509:SF1 1 232 9.0E-95 T 26-04-2016 RGE_RS03105 b571f4a209085b36b5be5e69b19392a7 364 PIRSF PIRSF009283 3 361 3.7E-110 T 26-04-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 RGE_RS03105 b571f4a209085b36b5be5e69b19392a7 364 Gene3D G3DSA:3.10.180.10 5 145 7.0E-46 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS03105 b571f4a209085b36b5be5e69b19392a7 364 PANTHER PTHR11959:SF1 7 362 1.0E-107 T 26-04-2016 RGE_RS03105 b571f4a209085b36b5be5e69b19392a7 364 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 164 280 1.3E-14 T 26-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RGE_RS03105 b571f4a209085b36b5be5e69b19392a7 364 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 13 360 1.5E-112 T 26-04-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 RGE_RS03105 b571f4a209085b36b5be5e69b19392a7 364 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 5 143 1.1E-68 T 26-04-2016 RGE_RS03105 b571f4a209085b36b5be5e69b19392a7 364 Gene3D G3DSA:3.10.180.10 161 361 4.4E-59 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS03105 b571f4a209085b36b5be5e69b19392a7 364 PANTHER PTHR11959 7 362 1.0E-107 T 26-04-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 RGE_RS03105 b571f4a209085b36b5be5e69b19392a7 364 SUPERFAMILY SSF54593 5 347 1.34E-77 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS00330 d8918cdcbd290a30a96ef63744c3b3f9 378 PIRSF PIRSF001361 11 374 6.6E-156 T 26-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RGE_RS00330 d8918cdcbd290a30a96ef63744c3b3f9 378 Gene3D G3DSA:3.20.20.70 26 374 1.8E-151 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS00330 d8918cdcbd290a30a96ef63744c3b3f9 378 PANTHER PTHR21225 21 378 9.0E-210 T 26-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RGE_RS00330 d8918cdcbd290a30a96ef63744c3b3f9 378 SUPERFAMILY SSF51569 24 370 1.57E-131 T 26-04-2016 RGE_RS00330 d8918cdcbd290a30a96ef63744c3b3f9 378 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 23 371 3.3E-159 T 26-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RGE_RS00330 d8918cdcbd290a30a96ef63744c3b3f9 378 Pfam PF00793 DAHP synthetase I family 62 357 7.3E-103 T 26-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 Gene3D G3DSA:3.40.50.1260 15 180 1.5E-60 T 26-04-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 Gene3D G3DSA:3.40.50.1270 181 381 2.1E-80 T 26-04-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 PRINTS PR00477 Phosphoglycerate kinase family signature 346 357 4.2E-79 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 PRINTS PR00477 Phosphoglycerate kinase family signature 191 210 4.2E-79 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 PRINTS PR00477 Phosphoglycerate kinase family signature 137 159 4.2E-79 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 PRINTS PR00477 Phosphoglycerate kinase family signature 109 124 4.2E-79 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 PRINTS PR00477 Phosphoglycerate kinase family signature 168 190 4.2E-79 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 PRINTS PR00477 Phosphoglycerate kinase family signature 313 338 4.2E-79 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 PRINTS PR00477 Phosphoglycerate kinase family signature 36 58 4.2E-79 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 PRINTS PR00477 Phosphoglycerate kinase family signature 369 386 4.2E-79 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 PRINTS PR00477 Phosphoglycerate kinase family signature 14 30 4.2E-79 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 Pfam PF00162 Phosphoglycerate kinase 15 383 3.1E-135 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 PIRSF PIRSF000724 1 397 5.2E-135 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 PANTHER PTHR11406 1 397 5.8E-181 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 393 38.476 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 SUPERFAMILY SSF53748 15 393 3.77E-138 T 26-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS02280 5d097e09d8edd1eacf603b9dce8f1d3e 397 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 19 29 - T 26-04-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RGE_RS20740 19aa4068603c2d838643d8fa26cf0e24 85 PANTHER PTHR15893 1 85 1.3E-44 T 26-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS20740 19aa4068603c2d838643d8fa26cf0e24 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 1.0E-37 T 26-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS20740 19aa4068603c2d838643d8fa26cf0e24 85 SUPERFAMILY SSF110324 2 81 1.71E-32 T 26-04-2016 RGE_RS20740 19aa4068603c2d838643d8fa26cf0e24 85 Gene3D G3DSA:2.40.50.100 21 82 5.2E-30 T 26-04-2016 RGE_RS20740 19aa4068603c2d838643d8fa26cf0e24 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 26-04-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS20740 19aa4068603c2d838643d8fa26cf0e24 85 Pfam PF01016 Ribosomal L27 protein 2 82 2.2E-37 T 26-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS20740 19aa4068603c2d838643d8fa26cf0e24 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 73 1.0E-13 T 26-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS20740 19aa4068603c2d838643d8fa26cf0e24 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 28.248 T 26-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS20740 19aa4068603c2d838643d8fa26cf0e24 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.5E-37 T 26-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS20740 19aa4068603c2d838643d8fa26cf0e24 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.5E-37 T 26-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS20740 19aa4068603c2d838643d8fa26cf0e24 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.5E-37 T 26-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06985 8a6a27dccf32a9a4806f19a5f3b3b460 254 Pfam PF00106 short chain dehydrogenase 15 203 7.9E-26 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06985 8a6a27dccf32a9a4806f19a5f3b3b460 254 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 195 0.0043 T 26-04-2016 RGE_RS06985 8a6a27dccf32a9a4806f19a5f3b3b460 254 Gene3D G3DSA:3.40.50.720 11 242 2.3E-40 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06985 8a6a27dccf32a9a4806f19a5f3b3b460 254 PANTHER PTHR24322 158 191 2.7E-20 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06985 8a6a27dccf32a9a4806f19a5f3b3b460 254 PANTHER PTHR24322 17 142 2.7E-20 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06985 8a6a27dccf32a9a4806f19a5f3b3b460 254 SUPERFAMILY SSF51735 12 241 2.75E-37 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06985 8a6a27dccf32a9a4806f19a5f3b3b460 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS06985 8a6a27dccf32a9a4806f19a5f3b3b460 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.9E-18 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06985 8a6a27dccf32a9a4806f19a5f3b3b460 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 1.9E-18 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06985 8a6a27dccf32a9a4806f19a5f3b3b460 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 1.9E-18 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06985 8a6a27dccf32a9a4806f19a5f3b3b460 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.9E-18 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS01270 e272c8349a669dcaa0a0548a107f3f22 296 SUPERFAMILY SSF161098 8 296 1.03E-63 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS01270 e272c8349a669dcaa0a0548a107f3f22 296 PANTHER PTHR32243:SF4 3 296 7.9E-114 T 26-04-2016 RGE_RS01270 e272c8349a669dcaa0a0548a107f3f22 296 PANTHER PTHR32243 3 296 7.9E-114 T 26-04-2016 RGE_RS01270 e272c8349a669dcaa0a0548a107f3f22 296 Gene3D G3DSA:1.10.3720.10 7 283 5.3E-62 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS01270 e272c8349a669dcaa0a0548a107f3f22 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 289 2.5E-18 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12790 c7b27a589c219cb28115183507791630 279 Gene3D G3DSA:1.10.3720.10 10 268 3.2E-52 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12790 c7b27a589c219cb28115183507791630 279 PANTHER PTHR30222 15 269 3.8E-63 T 26-04-2016 RGE_RS12790 c7b27a589c219cb28115183507791630 279 PANTHER PTHR30222:SF1 15 269 3.8E-63 T 26-04-2016 RGE_RS12790 c7b27a589c219cb28115183507791630 279 SUPERFAMILY SSF161098 4 265 1.31E-50 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12790 c7b27a589c219cb28115183507791630 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 265 3.4E-14 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS01835 f358fe4ec3da83c176147e926b53410c 332 PANTHER PTHR30600:SF7 20 316 1.9E-116 T 26-04-2016 RGE_RS01835 f358fe4ec3da83c176147e926b53410c 332 Gene3D G3DSA:1.10.760.10 180 320 1.3E-46 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS01835 f358fe4ec3da83c176147e926b53410c 332 SUPERFAMILY SSF46626 175 325 1.46E-42 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS01835 f358fe4ec3da83c176147e926b53410c 332 Gene3D G3DSA:1.10.760.10 37 179 7.7E-48 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS01835 f358fe4ec3da83c176147e926b53410c 332 PANTHER PTHR30600 20 316 1.9E-116 T 26-04-2016 RGE_RS01835 f358fe4ec3da83c176147e926b53410c 332 PIRSF PIRSF000294 6 330 1.4E-129 T 26-04-2016 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 RGE_RS01835 f358fe4ec3da83c176147e926b53410c 332 Pfam PF03150 Di-haem cytochrome c peroxidase 42 188 2.3E-50 T 26-04-2016 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 RGE_RS01835 f358fe4ec3da83c176147e926b53410c 332 SUPERFAMILY SSF46626 20 176 5.23E-48 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS01835 f358fe4ec3da83c176147e926b53410c 332 Pfam PF00034 Cytochrome c 197 306 2.5E-8 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS00290 71df80189062fde324b73432617a4574 312 Hamap MF_01110 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 1 306 53.527 T 26-04-2016 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS00290 71df80189062fde324b73432617a4574 312 SUPERFAMILY SSF55347 116 287 1.83E-37 T 26-04-2016 RGE_RS00290 71df80189062fde324b73432617a4574 312 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 46 100 2.9E-7 T 26-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RGE_RS00290 71df80189062fde324b73432617a4574 312 TIGRFAM TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase 4 306 2.2E-139 T 26-04-2016 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS00290 71df80189062fde324b73432617a4574 312 PANTHER PTHR32338 5 312 1.0E-113 T 26-04-2016 RGE_RS00290 71df80189062fde324b73432617a4574 312 Gene3D G3DSA:3.40.50.720 41 124 1.2E-16 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00290 71df80189062fde324b73432617a4574 312 PANTHER PTHR32338:SF9 5 312 1.0E-113 T 26-04-2016 RGE_RS00290 71df80189062fde324b73432617a4574 312 SMART SM00859 4 105 2.2E-14 T 26-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RGE_RS00290 71df80189062fde324b73432617a4574 312 SUPERFAMILY SSF51735 1 135 4.51E-32 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00290 71df80189062fde324b73432617a4574 312 Gene3D G3DSA:3.30.360.10 125 287 1.7E-37 T 26-04-2016 RGE_RS00810 aab5f4832fbd63927512bd84a3190e5d 252 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 181 3.2E-21 T 26-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type RGE_RS00810 aab5f4832fbd63927512bd84a3190e5d 252 PIRSF PIRSF000883 1 244 2.0E-46 T 26-04-2016 IPR011152 Phosphoesterase MJ0912 RGE_RS00810 aab5f4832fbd63927512bd84a3190e5d 252 PANTHER PTHR11124 1 70 7.2E-44 T 26-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 RGE_RS00810 aab5f4832fbd63927512bd84a3190e5d 252 PANTHER PTHR11124 91 130 7.2E-44 T 26-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 RGE_RS00810 aab5f4832fbd63927512bd84a3190e5d 252 PANTHER PTHR11124 146 228 7.2E-44 T 26-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 RGE_RS00810 aab5f4832fbd63927512bd84a3190e5d 252 SUPERFAMILY SSF56300 1 232 1.17E-43 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS00810 aab5f4832fbd63927512bd84a3190e5d 252 PANTHER PTHR11124:SF2 1 70 7.2E-44 T 26-04-2016 RGE_RS00810 aab5f4832fbd63927512bd84a3190e5d 252 PANTHER PTHR11124:SF2 91 130 7.2E-44 T 26-04-2016 RGE_RS00810 aab5f4832fbd63927512bd84a3190e5d 252 PANTHER PTHR11124:SF2 146 228 7.2E-44 T 26-04-2016 RGE_RS00810 aab5f4832fbd63927512bd84a3190e5d 252 Gene3D G3DSA:3.60.21.10 1 240 2.0E-45 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 SUPERFAMILY SSF52172 717 839 1.04E-34 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 SUPERFAMILY SSF47384 316 398 2.16E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 PRINTS PR00344 Bacterial sensor protein C-terminal signature 490 504 1.1E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 PRINTS PR00344 Bacterial sensor protein C-terminal signature 549 562 1.1E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 PRINTS PR00344 Bacterial sensor protein C-terminal signature 525 543 1.1E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 Gene3D G3DSA:1.20.120.160 846 951 1.1E-15 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 Pfam PF00072 Response regulator receiver domain 722 836 2.1E-26 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 Pfam PF00072 Response regulator receiver domain 583 699 4.9E-15 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 Pfam PF01627 Hpt domain 876 943 4.2E-8 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 SMART SM00304 255 309 6.7E-8 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 448 563 1.2E-26 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 SUPERFAMILY SSF158472 255 305 1.2E-5 T 26-04-2016 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 SUPERFAMILY SSF55874 386 562 1.24E-41 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 Gene3D G3DSA:3.40.50.2300 580 702 6.2E-25 T 26-04-2016 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 SMART SM00388 331 397 2.2E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 PANTHER PTHR24423:SF382 310 590 1.9E-143 T 26-04-2016 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 PANTHER PTHR24423:SF382 35 54 1.9E-143 T 26-04-2016 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 PANTHER PTHR24423:SF382 719 876 1.9E-143 T 26-04-2016 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 SMART SM00387 448 565 1.6E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 Gene3D G3DSA:1.10.287.130 323 393 1.9E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 Pfam PF00512 His Kinase A (phospho-acceptor) domain 331 397 1.6E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 Pfam PF00672 HAMP domain 241 305 1.8E-10 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 Gene3D G3DSA:3.40.50.2300 710 841 5.4E-38 T 26-04-2016 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 SUPERFAMILY SSF47226 819 946 2.36E-17 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 SMART SM00448 720 836 7.2E-35 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 SMART SM00448 581 701 9.7E-17 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 SUPERFAMILY SSF52172 581 704 2.13E-23 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 Gene3D G3DSA:3.30.565.10 398 568 4.3E-44 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 PANTHER PTHR24423 310 590 1.9E-143 T 26-04-2016 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 PANTHER PTHR24423 35 54 1.9E-143 T 26-04-2016 RGE_RS00775 1a865e286247fe8f27cc227c597aef70 964 PANTHER PTHR24423 719 876 1.9E-143 T 26-04-2016 RGE_RS00865 cab47e60e53351c319814a6a6c4c62eb 318 SUPERFAMILY SSF161098 90 304 5.89E-23 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS00865 cab47e60e53351c319814a6a6c4c62eb 318 PANTHER PTHR30465 1 317 1.5E-127 T 26-04-2016 RGE_RS00865 cab47e60e53351c319814a6a6c4c62eb 318 Gene3D G3DSA:1.10.3720.10 90 312 1.6E-24 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS00865 cab47e60e53351c319814a6a6c4c62eb 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 316 1.2E-41 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS00865 cab47e60e53351c319814a6a6c4c62eb 318 PANTHER PTHR30465:SF59 1 317 1.5E-127 T 26-04-2016 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 56 251 3.1E-88 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 151 163 9.7E-30 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 123 137 9.7E-30 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 173 185 9.7E-30 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 111 123 9.7E-30 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 241 251 9.7E-30 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 51 60 9.7E-30 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 228 240 - T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PANTHER PTHR30587 37 253 1.4E-116 T 26-04-2016 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PANTHER PTHR30587:SF0 37 253 1.4E-116 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 180 200 9.3E-64 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 92 111 9.3E-64 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 53 72 9.3E-64 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 201 222 9.3E-64 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 225 250 9.3E-64 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 72 92 9.3E-64 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 Pfam PF00813 FliP family 56 247 9.5E-79 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS08220 f49034f8769db5816b0282f85809af34 253 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 180 195 - T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 SUPERFAMILY SSF53901 271 391 1.9E-40 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 PANTHER PTHR18919 1 392 2.1E-199 T 26-04-2016 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 PIRSF PIRSF000429 1 392 4.1E-120 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 6.8E-126 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 Gene3D G3DSA:3.40.47.10 155 191 9.3E-52 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 Gene3D G3DSA:3.40.47.10 276 391 9.3E-52 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 ProSitePatterns PS00737 Thiolases signature 2. 338 354 - T 26-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 Pfam PF00108 Thiolase, N-terminal domain 5 261 4.1E-62 T 26-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 SUPERFAMILY SSF53901 4 269 5.51E-64 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 PANTHER PTHR18919:SF71 1 392 2.1E-199 T 26-04-2016 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 Gene3D G3DSA:3.40.47.10 4 124 3.0E-60 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 Gene3D G3DSA:3.40.47.10 192 275 3.0E-60 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS10280 27b70a6d849f358aa3fff0fc0e510b15 392 Pfam PF02803 Thiolase, C-terminal domain 270 391 5.2E-41 T 26-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RGE_RS08735 8a142c4c88ad2346b6cf712eeb1a5785 266 SUPERFAMILY SSF52540 76 251 5.63E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08735 8a142c4c88ad2346b6cf712eeb1a5785 266 PIRSF PIRSF003073 5 258 8.8E-83 T 26-04-2016 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein RGE_RS08735 8a142c4c88ad2346b6cf712eeb1a5785 266 SMART SM00382 105 237 3.6E-8 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS08735 8a142c4c88ad2346b6cf712eeb1a5785 266 Gene3D G3DSA:3.40.50.300 101 238 4.5E-27 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08735 8a142c4c88ad2346b6cf712eeb1a5785 266 PANTHER PTHR30050 11 251 1.7E-67 T 26-04-2016 RGE_RS08735 8a142c4c88ad2346b6cf712eeb1a5785 266 Pfam PF01695 IstB-like ATP binding protein 61 236 2.0E-64 T 26-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 RGE_RS03365 8a142c4c88ad2346b6cf712eeb1a5785 266 SUPERFAMILY SSF52540 76 251 5.63E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03365 8a142c4c88ad2346b6cf712eeb1a5785 266 PIRSF PIRSF003073 5 258 8.8E-83 T 26-04-2016 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein RGE_RS03365 8a142c4c88ad2346b6cf712eeb1a5785 266 SMART SM00382 105 237 3.6E-8 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS03365 8a142c4c88ad2346b6cf712eeb1a5785 266 Gene3D G3DSA:3.40.50.300 101 238 4.5E-27 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03365 8a142c4c88ad2346b6cf712eeb1a5785 266 PANTHER PTHR30050 11 251 1.7E-67 T 26-04-2016 RGE_RS03365 8a142c4c88ad2346b6cf712eeb1a5785 266 Pfam PF01695 IstB-like ATP binding protein 61 236 2.0E-64 T 26-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 RGE_RS18675 8a142c4c88ad2346b6cf712eeb1a5785 266 SUPERFAMILY SSF52540 76 251 5.63E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18675 8a142c4c88ad2346b6cf712eeb1a5785 266 PIRSF PIRSF003073 5 258 8.8E-83 T 26-04-2016 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein RGE_RS18675 8a142c4c88ad2346b6cf712eeb1a5785 266 SMART SM00382 105 237 3.6E-8 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS18675 8a142c4c88ad2346b6cf712eeb1a5785 266 Gene3D G3DSA:3.40.50.300 101 238 4.5E-27 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18675 8a142c4c88ad2346b6cf712eeb1a5785 266 PANTHER PTHR30050 11 251 1.7E-67 T 26-04-2016 RGE_RS18675 8a142c4c88ad2346b6cf712eeb1a5785 266 Pfam PF01695 IstB-like ATP binding protein 61 236 2.0E-64 T 26-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 RGE_RS08025 8a142c4c88ad2346b6cf712eeb1a5785 266 SUPERFAMILY SSF52540 76 251 5.63E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08025 8a142c4c88ad2346b6cf712eeb1a5785 266 PIRSF PIRSF003073 5 258 8.8E-83 T 26-04-2016 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein RGE_RS08025 8a142c4c88ad2346b6cf712eeb1a5785 266 SMART SM00382 105 237 3.6E-8 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS08025 8a142c4c88ad2346b6cf712eeb1a5785 266 Gene3D G3DSA:3.40.50.300 101 238 4.5E-27 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08025 8a142c4c88ad2346b6cf712eeb1a5785 266 PANTHER PTHR30050 11 251 1.7E-67 T 26-04-2016 RGE_RS08025 8a142c4c88ad2346b6cf712eeb1a5785 266 Pfam PF01695 IstB-like ATP binding protein 61 236 2.0E-64 T 26-04-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 RGE_RS20360 1d2182df359c43a1840bfecc08c26607 305 PANTHER PTHR11048 14 299 5.3E-77 T 26-04-2016 RGE_RS20360 1d2182df359c43a1840bfecc08c26607 305 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 69 91 - T 26-04-2016 IPR030470 UbiA prenyltransferase conserved site RGE_RS20360 1d2182df359c43a1840bfecc08c26607 305 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 14 295 19.667 T 26-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 RGE_RS20360 1d2182df359c43a1840bfecc08c26607 305 Pfam PF01040 UbiA prenyltransferase family 30 278 2.6E-63 T 26-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RGE_RS20360 1d2182df359c43a1840bfecc08c26607 305 PANTHER PTHR11048:SF3 14 299 5.3E-77 T 26-04-2016 RGE_RS20360 1d2182df359c43a1840bfecc08c26607 305 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 17 294 5.7E-98 T 26-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 Gene3D G3DSA:2.40.50.100 202 270 2.1E-24 T 26-04-2016 RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 Gene3D G3DSA:2.40.50.100 135 200 9.3E-27 T 26-04-2016 RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 PANTHER PTHR30432 7 272 1.3E-48 T 26-04-2016 RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 26 88 5.8E-16 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 Gene3D G3DSA:1.10.10.10 7 134 1.3E-43 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 PIRSF PIRSF005763 5 272 8.2E-95 T 26-04-2016 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 SUPERFAMILY SSF50331 132 200 4.86E-20 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 203 270 9.3E-16 T 26-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 132 199 2.0E-23 T 26-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 SUPERFAMILY SSF50331 203 270 5.35E-18 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 22 105 2.3E-31 T 26-04-2016 IPR003725 Molybdenum-binding protein ModE, N-terminal RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 SUPERFAMILY SSF46785 10 112 1.2E-26 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 Pfam PF03459 TOBE domain 134 196 3.9E-19 T 26-04-2016 IPR005116 Transport-associated OB, type 1 RGE_RS03095 cb139ed3d6d92c75f318d23b51eaa92c 272 Pfam PF03459 TOBE domain 207 268 1.6E-11 T 26-04-2016 IPR005116 Transport-associated OB, type 1 RGE_RS05225 7d4b3de702cd6ee103c294af5cc1c9e6 243 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 11 242 36.017 T 26-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RGE_RS05225 7d4b3de702cd6ee103c294af5cc1c9e6 243 Pfam PF01209 ubiE/COQ5 methyltransferase family 16 242 2.5E-84 T 26-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RGE_RS05225 7d4b3de702cd6ee103c294af5cc1c9e6 243 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 31 46 - T 26-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RGE_RS05225 7d4b3de702cd6ee103c294af5cc1c9e6 243 Gene3D G3DSA:3.40.50.150 19 236 6.3E-52 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS05225 7d4b3de702cd6ee103c294af5cc1c9e6 243 PANTHER PTHR10108 4 242 4.0E-127 T 26-04-2016 RGE_RS05225 7d4b3de702cd6ee103c294af5cc1c9e6 243 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 20 242 6.8E-77 T 26-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RGE_RS05225 7d4b3de702cd6ee103c294af5cc1c9e6 243 PANTHER PTHR10108:SF864 4 242 4.0E-127 T 26-04-2016 RGE_RS05225 7d4b3de702cd6ee103c294af5cc1c9e6 243 SUPERFAMILY SSF53335 11 236 7.3E-45 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS13440 37a3297d931832b77a37e8520918b9d7 317 SMART SM00363 28 92 4.9E-6 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS13440 37a3297d931832b77a37e8520918b9d7 317 PANTHER PTHR11079:SF73 15 309 9.0E-104 T 26-04-2016 RGE_RS13440 37a3297d931832b77a37e8520918b9d7 317 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 146 160 - T 26-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS13440 37a3297d931832b77a37e8520918b9d7 317 Pfam PF00849 RNA pseudouridylate synthase 103 252 1.4E-27 T 26-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS13440 37a3297d931832b77a37e8520918b9d7 317 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 25 307 3.0E-80 T 26-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS13440 37a3297d931832b77a37e8520918b9d7 317 SUPERFAMILY SSF55120 89 307 1.58E-67 T 26-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS13440 37a3297d931832b77a37e8520918b9d7 317 Pfam PF01479 S4 domain 28 75 2.5E-7 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS13440 37a3297d931832b77a37e8520918b9d7 317 Gene3D G3DSA:3.10.290.10 28 118 4.3E-10 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS13440 37a3297d931832b77a37e8520918b9d7 317 PANTHER PTHR11079 15 309 9.0E-104 T 26-04-2016 RGE_RS13440 37a3297d931832b77a37e8520918b9d7 317 SUPERFAMILY SSF55174 28 116 1.68E-9 T 26-04-2016 RGE_RS01240 b8077acc39abce948085c74fffd14776 901 Gene3D G3DSA:3.10.196.10 631 898 2.8E-94 T 26-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RGE_RS01240 b8077acc39abce948085c74fffd14776 901 Gene3D G3DSA:1.10.1240.10 311 400 9.5E-35 T 26-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RGE_RS01240 b8077acc39abce948085c74fffd14776 901 Gene3D G3DSA:3.20.20.20 18 298 1.7E-114 T 26-04-2016 IPR000489 Pterin-binding domain GO:0042558 RGE_RS01240 b8077acc39abce948085c74fffd14776 901 SMART SM01018 316 403 9.6E-40 T 26-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RGE_RS01240 b8077acc39abce948085c74fffd14776 901 Pfam PF00809 Pterin binding enzyme 22 260 5.7E-57 T 26-04-2016 IPR000489 Pterin-binding domain GO:0042558 RGE_RS01240 b8077acc39abce948085c74fffd14776 901 SUPERFAMILY SSF47644 312 402 1.07E-25 T 26-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RGE_RS01240 b8077acc39abce948085c74fffd14776 901 Pfam PF02607 B12 binding domain 318 395 3.2E-24 T 26-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RGE_RS01240 b8077acc39abce948085c74fffd14776 901 PIRSF PIRSF000381 1 873 0.0 T 26-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RGE_RS01240 b8077acc39abce948085c74fffd14776 901 Gene3D G3DSA:3.40.50.280 415 568 2.8E-60 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS01240 b8077acc39abce948085c74fffd14776 901 SUPERFAMILY SSF52242 412 565 1.09E-41 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS01240 b8077acc39abce948085c74fffd14776 901 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 611 886 4.3E-114 T 26-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RGE_RS01240 b8077acc39abce948085c74fffd14776 901 Pfam PF02310 B12 binding domain 418 512 7.1E-18 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS01240 b8077acc39abce948085c74fffd14776 901 SUPERFAMILY SSF51717 18 292 8.5E-91 T 26-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RGE_RS01240 b8077acc39abce948085c74fffd14776 901 SUPERFAMILY SSF56507 575 897 7.59E-115 T 26-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RGE_RS01240 b8077acc39abce948085c74fffd14776 901 TIGRFAM TIGR02082 metH: methionine synthase 2 870 0.0 T 26-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RGE_RS16265 5b566ce54879f5d4ea5c9b84f2a6d449 400 Pfam PF01494 FAD binding domain 6 296 6.9E-10 T 26-04-2016 IPR002938 FAD-binding domain GO:0071949 RGE_RS16265 5b566ce54879f5d4ea5c9b84f2a6d449 400 SUPERFAMILY SSF51905 4 180 2.8E-40 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16265 5b566ce54879f5d4ea5c9b84f2a6d449 400 SUPERFAMILY SSF51905 259 389 2.8E-40 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16265 5b566ce54879f5d4ea5c9b84f2a6d449 400 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 6 306 2.0E-76 T 26-04-2016 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 RGE_RS16265 5b566ce54879f5d4ea5c9b84f2a6d449 400 Gene3D G3DSA:3.50.50.60 4 166 5.5E-18 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16265 5b566ce54879f5d4ea5c9b84f2a6d449 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 271 286 2.7E-14 T 26-04-2016 RGE_RS16265 5b566ce54879f5d4ea5c9b84f2a6d449 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 2.7E-14 T 26-04-2016 RGE_RS16265 5b566ce54879f5d4ea5c9b84f2a6d449 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 2.7E-14 T 26-04-2016 RGE_RS16265 5b566ce54879f5d4ea5c9b84f2a6d449 400 Gene3D G3DSA:3.30.9.10 167 317 8.1E-42 T 26-04-2016 RGE_RS16265 5b566ce54879f5d4ea5c9b84f2a6d449 400 PANTHER PTHR10617 4 395 3.8E-66 T 26-04-2016 RGE_RS16265 5b566ce54879f5d4ea5c9b84f2a6d449 400 PANTHER PTHR10617:SF101 4 395 3.8E-66 T 26-04-2016 RGE_RS16265 5b566ce54879f5d4ea5c9b84f2a6d449 400 TIGRFAM TIGR02023 BchP-ChlP: geranylgeranyl reductase 7 395 2.3E-156 T 26-04-2016 IPR010253 Geranylgeranyl reductase, plant/prokaryotic GO:0015979|GO:0015995|GO:0045550|GO:0055114 KEGG: 00900+1.3.1.83|UniPathway: UPA00668 RGE_RS21575 4ec9518aab8d433b7cb21be9991cef52 322 Gene3D G3DSA:3.40.50.300 113 313 4.6E-87 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21575 4ec9518aab8d433b7cb21be9991cef52 322 SUPERFAMILY SSF52540 111 289 2.75E-39 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21575 4ec9518aab8d433b7cb21be9991cef52 322 PANTHER PTHR30473 2 322 8.4E-157 T 26-04-2016 RGE_RS21575 4ec9518aab8d433b7cb21be9991cef52 322 PANTHER PTHR30473:SF1 2 322 8.4E-157 T 26-04-2016 RGE_RS21575 4ec9518aab8d433b7cb21be9991cef52 322 Pfam PF02562 PhoH-like protein 113 314 7.9E-92 T 26-04-2016 IPR003714 PhoH-like protein GO:0005524 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 SMART SM00957 6 406 0.0 T 26-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 Pfam PF07517 SecA DEAD-like domain 7 406 1.3E-132 T 26-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 Pfam PF02810 SEC-C motif 894 912 1.7E-9 T 26-04-2016 IPR004027 SEC-C motif RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 Gene3D G3DSA:3.90.1440.10 230 372 2.5E-46 T 26-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 SUPERFAMILY SSF52540 421 629 6.82E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 SUPERFAMILY SSF81767 227 372 6.02E-43 T 26-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 Pfam PF07516 SecA Wing and Scaffold domain 628 840 6.2E-63 T 26-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 Gene3D G3DSA:3.40.50.300 421 630 3.9E-91 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 SMART SM00958 228 362 1.9E-80 T 26-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 Pfam PF01043 SecA preprotein cross-linking domain 232 362 1.9E-38 T 26-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 Gene3D G3DSA:1.10.3060.10 659 842 3.8E-54 T 26-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 827 0.0 T 26-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 Gene3D G3DSA:3.40.50.300 3 228 8.9E-128 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 Gene3D G3DSA:3.40.50.300 373 420 8.9E-128 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 PRINTS PR00906 SecA protein signature 101 115 2.7E-71 T 26-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 PRINTS PR00906 SecA protein signature 380 397 2.7E-71 T 26-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 PRINTS PR00906 SecA protein signature 343 365 2.7E-71 T 26-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 PRINTS PR00906 SecA protein signature 117 127 2.7E-71 T 26-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 PRINTS PR00906 SecA protein signature 170 190 2.7E-71 T 26-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 PRINTS PR00906 SecA protein signature 63 87 2.7E-71 T 26-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 PRINTS PR00906 SecA protein signature 417 430 2.7E-71 T 26-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 SUPERFAMILY SSF52540 372 419 1.24E-84 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 SUPERFAMILY SSF52540 4 228 1.24E-84 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 PANTHER PTHR30612 4 524 0.0 T 26-04-2016 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 PANTHER PTHR30612 561 914 0.0 T 26-04-2016 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 SUPERFAMILY SSF81886 890 902 3.53E-78 T 26-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 SUPERFAMILY SSF81886 633 851 3.53E-78 T 26-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 843 19.963 T 26-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RGE_RS05165 4371fbb6c2d871f693b1b2c046417e49 914 ProSitePatterns PS01312 SecA family signature. 504 519 - T 26-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 RGE_RS17075 733a684c2fd63ea0acf09974ab5d7c29 227 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 15 226 29.88 T 26-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RGE_RS17075 733a684c2fd63ea0acf09974ab5d7c29 227 PANTHER PTHR23417 1 225 4.0E-70 T 26-04-2016 RGE_RS17075 733a684c2fd63ea0acf09974ab5d7c29 227 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 40 225 3.3E-55 T 26-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RGE_RS17075 733a684c2fd63ea0acf09974ab5d7c29 227 PANTHER PTHR23417:SF14 1 225 4.0E-70 T 26-04-2016 RGE_RS17075 733a684c2fd63ea0acf09974ab5d7c29 227 Pfam PF02390 Putative methyltransferase 55 221 7.5E-56 T 26-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RGE_RS17075 733a684c2fd63ea0acf09974ab5d7c29 227 SUPERFAMILY SSF53335 7 224 1.8E-41 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS17075 733a684c2fd63ea0acf09974ab5d7c29 227 Gene3D G3DSA:3.40.50.150 48 199 5.1E-18 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 Gene3D G3DSA:1.10.3170.10 155 364 4.1E-32 T 26-04-2016 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 PANTHER PTHR11070 1 82 3.1E-239 T 26-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 PANTHER PTHR11070 119 217 3.1E-239 T 26-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 PANTHER PTHR11070 813 1200 3.1E-239 T 26-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 PANTHER PTHR11070 531 789 3.1E-239 T 26-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 PANTHER PTHR11070 319 502 3.1E-239 T 26-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 SUPERFAMILY SSF52540 814 839 5.02E-108 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 SUPERFAMILY SSF52540 341 485 5.02E-108 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 SUPERFAMILY SSF52540 119 218 5.02E-108 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 SUPERFAMILY SSF52540 514 781 5.02E-108 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 SUPERFAMILY SSF52540 14 73 5.02E-108 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 Pfam PF13361 UvrD-like helicase C-terminal domain 740 834 2.1E-12 T 26-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 Pfam PF00580 UvrD/REP helicase N-terminal domain 16 451 1.4E-53 T 26-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 10 1204 5.3E-254 T 26-04-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 Gene3D G3DSA:3.40.50.300 12 75 2.3E-46 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 Gene3D G3DSA:3.40.50.300 121 150 2.3E-46 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 Gene3D G3DSA:3.40.50.300 366 464 2.3E-46 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 SUPERFAMILY SSF52980 926 1205 5.2E-63 T 26-04-2016 IPR011335 Restriction endonuclease type II-like RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 Gene3D G3DSA:3.90.320.10 923 1206 1.1E-78 T 26-04-2016 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 PANTHER PTHR11070:SF23 1 82 3.1E-239 T 26-04-2016 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 PANTHER PTHR11070:SF23 119 217 3.1E-239 T 26-04-2016 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 PANTHER PTHR11070:SF23 813 1200 3.1E-239 T 26-04-2016 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 PANTHER PTHR11070:SF23 531 789 3.1E-239 T 26-04-2016 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 PANTHER PTHR11070:SF23 319 502 3.1E-239 T 26-04-2016 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 Gene3D G3DSA:1.10.486.10 596 740 2.5E-44 T 26-04-2016 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 Gene3D G3DSA:3.40.50.300 465 594 3.7E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 Gene3D G3DSA:3.40.50.300 741 869 3.7E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 6 1205 13.439 T 26-04-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 RGE_RS18330 36aa74ba20a14db82c1130acb99e0a1a 1210 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1042 1148 1.0E-4 T 26-04-2016 RGE_RS19715 731376c2203039d42a2dd639ec2585ab 232 Gene3D G3DSA:3.20.20.70 1 229 1.7E-31 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS19715 731376c2203039d42a2dd639ec2585ab 232 SUPERFAMILY SSF51366 1 229 3.12E-25 T 26-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RGE_RS19715 731376c2203039d42a2dd639ec2585ab 232 Pfam PF00977 Histidine biosynthesis protein 2 228 5.2E-18 T 26-04-2016 IPR006062 Histidine biosynthesis GO:0000105 RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 SMART SM00421 153 210 4.0E-22 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 SUPERFAMILY SSF46894 142 214 2.21E-20 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 SUPERFAMILY SSF52172 12 154 1.57E-26 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 PANTHER PTHR26402 10 209 7.5E-54 T 26-04-2016 RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 PANTHER PTHR26402:SF613 10 209 7.5E-54 T 26-04-2016 RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 Gene3D G3DSA:1.10.10.10 158 214 7.8E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 5.6E-13 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 5.6E-13 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 5.6E-13 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 Gene3D G3DSA:3.40.50.2300 12 157 1.3E-27 T 26-04-2016 RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 SMART SM00448 10 129 5.5E-21 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 Pfam PF00072 Response regulator receiver domain 12 129 1.3E-21 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS22105 0d4b05a80680d1378605112af1c29205 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 209 4.2E-21 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS12270 1373db89cb1f7aae858c1cf152be72f1 353 Gene3D G3DSA:1.10.1530.10 3 72 3.4E-18 T 26-04-2016 RGE_RS12270 1373db89cb1f7aae858c1cf152be72f1 353 PANTHER PTHR11091 1 343 5.7E-64 T 26-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 RGE_RS12270 1373db89cb1f7aae858c1cf152be72f1 353 Gene3D G3DSA:3.30.1370.60 73 286 1.2E-65 T 26-04-2016 RGE_RS12270 1373db89cb1f7aae858c1cf152be72f1 353 Pfam PF02615 Malate/L-lactate dehydrogenase 5 337 1.3E-94 T 26-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 RGE_RS12270 1373db89cb1f7aae858c1cf152be72f1 353 SUPERFAMILY SSF89733 1 342 1.14E-90 T 26-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 RGE_RS20635 058e04cbde753482b599810a600343b2 480 Gene3D G3DSA:3.40.50.2300 6 137 2.1E-33 T 26-04-2016 RGE_RS20635 058e04cbde753482b599810a600343b2 480 PANTHER PTHR32071:SF28 414 475 7.8E-193 T 26-04-2016 RGE_RS20635 058e04cbde753482b599810a600343b2 480 PANTHER PTHR32071:SF28 8 395 7.8E-193 T 26-04-2016 RGE_RS20635 058e04cbde753482b599810a600343b2 480 Gene3D G3DSA:1.10.8.60 324 394 4.4E-18 T 26-04-2016 RGE_RS20635 058e04cbde753482b599810a600343b2 480 SUPERFAMILY SSF52540 151 393 7.39E-65 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20635 058e04cbde753482b599810a600343b2 480 SMART SM00448 7 118 5.2E-35 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS20635 058e04cbde753482b599810a600343b2 480 SUPERFAMILY SSF46689 366 475 2.37E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS20635 058e04cbde753482b599810a600343b2 480 Pfam PF02954 Bacterial regulatory protein, Fis family 433 473 5.6E-10 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS20635 058e04cbde753482b599810a600343b2 480 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 439 456 1.8E-5 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS20635 058e04cbde753482b599810a600343b2 480 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 456 476 1.8E-5 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS20635 058e04cbde753482b599810a600343b2 480 SUPERFAMILY SSF52172 5 196 1.01E-41 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS20635 058e04cbde753482b599810a600343b2 480 Gene3D G3DSA:3.40.50.300 149 323 7.7E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20635 058e04cbde753482b599810a600343b2 480 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 365 374 - T 26-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RGE_RS20635 058e04cbde753482b599810a600343b2 480 SMART SM00382 171 314 9.6E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS20635 058e04cbde753482b599810a600343b2 480 Gene3D G3DSA:1.10.10.60 428 472 2.4E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS20635 058e04cbde753482b599810a600343b2 480 Pfam PF00072 Response regulator receiver domain 10 118 3.1E-25 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS20635 058e04cbde753482b599810a600343b2 480 PANTHER PTHR32071 414 475 7.8E-193 T 26-04-2016 RGE_RS20635 058e04cbde753482b599810a600343b2 480 PANTHER PTHR32071 8 395 7.8E-193 T 26-04-2016 RGE_RS20635 058e04cbde753482b599810a600343b2 480 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 175 188 - T 26-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RGE_RS20635 058e04cbde753482b599810a600343b2 480 Pfam PF00158 Sigma-54 interaction domain 151 317 2.0E-67 T 26-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RGE_RS20635 058e04cbde753482b599810a600343b2 480 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 237 252 - T 26-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 SMART SM00388 223 288 3.3E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 448 1.6E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 390 1.6E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 394 404 1.6E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 429 1.6E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 Pfam PF00072 Response regulator receiver domain 480 594 5.4E-26 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 SUPERFAMILY SSF47384 208 289 3.73E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 Gene3D G3DSA:1.10.287.130 220 283 6.0E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 Pfam PF00512 His Kinase A (phospho-acceptor) domain 223 288 8.5E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 SUPERFAMILY SSF52172 479 598 1.08E-38 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 335 449 8.0E-28 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 Gene3D G3DSA:3.40.50.2300 479 598 4.4E-42 T 26-04-2016 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 SMART SM00448 478 594 3.4E-36 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 SMART SM00387 335 451 3.8E-39 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 SUPERFAMILY SSF55874 277 449 5.37E-43 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 PANTHER PTHR24423 202 598 8.0E-156 T 26-04-2016 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 PANTHER PTHR24423 3 12 8.0E-156 T 26-04-2016 RGE_RS07255 7c38d5b6ed134a5955afb0334042d657 598 Gene3D G3DSA:3.30.565.10 289 453 4.2E-46 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23045 d8cae3c71af9cb827cefd56d04a92a58 249 Gene3D G3DSA:3.40.50.1820 94 232 3.8E-12 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS23045 d8cae3c71af9cb827cefd56d04a92a58 249 Gene3D G3DSA:3.40.50.1820 9 53 3.8E-12 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS23045 d8cae3c71af9cb827cefd56d04a92a58 249 SUPERFAMILY SSF53474 106 233 5.11E-10 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS10900 97a365d50e5a6f59ca136f003a84aa89 497 PANTHER PTHR32438 5 497 1.8E-160 T 26-04-2016 RGE_RS10900 97a365d50e5a6f59ca136f003a84aa89 497 PANTHER PTHR32438:SF5 5 497 1.8E-160 T 26-04-2016 RGE_RS10900 97a365d50e5a6f59ca136f003a84aa89 497 SUPERFAMILY SSF51445 5 496 1.16E-167 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS10900 97a365d50e5a6f59ca136f003a84aa89 497 Pfam PF02446 4-alpha-glucanotransferase 11 475 1.7E-156 T 26-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RGE_RS10900 97a365d50e5a6f59ca136f003a84aa89 497 Gene3D G3DSA:3.20.20.80 3 496 2.5E-178 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS10900 97a365d50e5a6f59ca136f003a84aa89 497 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 5 496 2.0E-110 T 26-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RGE_RS04365 7a8db6799e8a5531add5793c6152ff51 418 ProSitePatterns PS00217 Sugar transport proteins signature 2. 123 148 - T 26-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RGE_RS04365 7a8db6799e8a5531add5793c6152ff51 418 Gene3D G3DSA:1.20.1250.20 228 415 3.1E-32 T 26-04-2016 RGE_RS04365 7a8db6799e8a5531add5793c6152ff51 418 SUPERFAMILY SSF103473 10 413 1.83E-90 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS04365 7a8db6799e8a5531add5793c6152ff51 418 PANTHER PTHR11662 16 408 4.0E-65 T 26-04-2016 RGE_RS04365 7a8db6799e8a5531add5793c6152ff51 418 Gene3D G3DSA:1.20.1250.20 25 212 9.1E-45 T 26-04-2016 RGE_RS04365 7a8db6799e8a5531add5793c6152ff51 418 PIRSF PIRSF002808 16 416 2.0E-34 T 26-04-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 RGE_RS04365 7a8db6799e8a5531add5793c6152ff51 418 Pfam PF07690 Major Facilitator Superfamily 32 333 1.9E-55 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS02170 7d67be0d8c814117255737c2ba91fb12 485 Pfam PF13440 Polysaccharide biosynthesis protein 31 322 8.0E-70 T 26-04-2016 RGE_RS02170 7d67be0d8c814117255737c2ba91fb12 485 PANTHER PTHR30250:SF0 1 484 3.2E-64 T 26-04-2016 RGE_RS02170 7d67be0d8c814117255737c2ba91fb12 485 PANTHER PTHR30250 1 484 3.2E-64 T 26-04-2016 RGE_RS02170 7d67be0d8c814117255737c2ba91fb12 485 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 325 465 3.6E-11 T 26-04-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain RGE_RS18210 36da77cdb0bb501f4bed06b096db31e3 546 Pfam PF00361 Proton-conducting membrane transporter 133 361 1.5E-29 T 26-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RGE_RS18210 36da77cdb0bb501f4bed06b096db31e3 546 PANTHER PTHR22773:SF49 393 536 9.6E-105 T 26-04-2016 RGE_RS18210 36da77cdb0bb501f4bed06b096db31e3 546 PANTHER PTHR22773:SF49 1 361 9.6E-105 T 26-04-2016 RGE_RS18210 36da77cdb0bb501f4bed06b096db31e3 546 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 167 191 8.9E-8 T 26-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RGE_RS18210 36da77cdb0bb501f4bed06b096db31e3 546 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 332 351 8.9E-8 T 26-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RGE_RS18210 36da77cdb0bb501f4bed06b096db31e3 546 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 137 156 8.9E-8 T 26-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RGE_RS18210 36da77cdb0bb501f4bed06b096db31e3 546 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 240 264 8.9E-8 T 26-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RGE_RS18210 36da77cdb0bb501f4bed06b096db31e3 546 PANTHER PTHR22773 393 536 9.6E-105 T 26-04-2016 RGE_RS18210 36da77cdb0bb501f4bed06b096db31e3 546 PANTHER PTHR22773 1 361 9.6E-105 T 26-04-2016 RGE_RS07425 281829075e5f400f32cf9a2ea75b76e1 178 Gene3D G3DSA:3.40.50.1240 3 168 7.6E-21 T 26-04-2016 IPR029033 Histidine phosphatase superfamily RGE_RS07425 281829075e5f400f32cf9a2ea75b76e1 178 SMART SM00855 3 149 2.5E-7 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS07425 281829075e5f400f32cf9a2ea75b76e1 178 SUPERFAMILY SSF53254 3 165 2.36E-24 T 26-04-2016 IPR029033 Histidine phosphatase superfamily RGE_RS07425 281829075e5f400f32cf9a2ea75b76e1 178 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 150 1.3E-16 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS18095 1c606ff1417210dcbc362578cdffe264 262 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 8 250 9.3E-43 T 26-04-2016 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154|UniPathway: UPA00904 RGE_RS18095 1c606ff1417210dcbc362578cdffe264 262 SUPERFAMILY SSF53167 8 248 4.97E-60 T 26-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RGE_RS18095 1c606ff1417210dcbc362578cdffe264 262 Gene3D G3DSA:3.40.50.1580 7 254 1.1E-65 T 26-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RGE_RS18095 1c606ff1417210dcbc362578cdffe264 262 PANTHER PTHR21234 9 255 8.3E-45 T 26-04-2016 IPR018017 Nucleoside phosphorylase RGE_RS18095 1c606ff1417210dcbc362578cdffe264 262 Pfam PF01048 Phosphorylase superfamily 8 251 7.0E-46 T 26-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RGE_RS18095 1c606ff1417210dcbc362578cdffe264 262 PANTHER PTHR21234:SF16 9 255 8.3E-45 T 26-04-2016 RGE_RS12365 819814dbf44ebac11f99651b3863f0c8 330 SUPERFAMILY SSF53850 38 266 7.44E-49 T 26-04-2016 RGE_RS12365 819814dbf44ebac11f99651b3863f0c8 330 PANTHER PTHR30024:SF11 1 319 5.0E-115 T 26-04-2016 RGE_RS12365 819814dbf44ebac11f99651b3863f0c8 330 SMART SM00062 40 257 1.5E-19 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS12365 819814dbf44ebac11f99651b3863f0c8 330 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 41 320 7.5E-71 T 26-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 RGE_RS12365 819814dbf44ebac11f99651b3863f0c8 330 Gene3D G3DSA:3.40.190.10 124 245 2.2E-30 T 26-04-2016 RGE_RS12365 819814dbf44ebac11f99651b3863f0c8 330 PANTHER PTHR30024 1 319 5.0E-115 T 26-04-2016 RGE_RS12365 819814dbf44ebac11f99651b3863f0c8 330 Pfam PF13379 NMT1-like family 37 264 2.9E-14 T 26-04-2016 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 SUPERFAMILY SSF158472 319 366 1.44E-6 T 26-04-2016 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 SUPERFAMILY SSF47384 501 577 6.47E-12 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 Gene3D G3DSA:3.30.450.20 376 496 9.5E-18 T 26-04-2016 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 PRINTS PR00344 Bacterial sensor protein C-terminal signature 662 676 5.9E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 PRINTS PR00344 Bacterial sensor protein C-terminal signature 691 709 5.9E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 PRINTS PR00344 Bacterial sensor protein C-terminal signature 680 690 5.9E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 SUPERFAMILY SSF55874 567 717 8.12E-31 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 PIRSF PIRSF037532 1 741 2.9E-202 T 26-04-2016 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 PANTHER PTHR24423 381 715 9.3E-64 T 26-04-2016 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 PANTHER PTHR24423 36 59 9.3E-64 T 26-04-2016 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 PANTHER PTHR24423 159 178 9.3E-64 T 26-04-2016 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 SMART SM00304 317 369 8.6E-6 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 Pfam PF12860 PAS fold 389 501 1.7E-8 T 26-04-2016 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 SMART SM00387 617 739 1.8E-29 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 SUPERFAMILY SSF55785 372 495 5.58E-15 T 26-04-2016 IPR000014 PAS domain RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 SMART SM00091 383 449 6.3E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 Gene3D G3DSA:3.30.565.10 564 718 3.3E-31 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 Gene3D G3DSA:1.10.287.130 501 563 7.1E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 Pfam PF00672 HAMP domain 299 365 3.0E-11 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 383 502 3.1E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 SMART SM00388 505 577 2.0E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 617 734 1.2E-16 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS21800 ab601ad79dd6bc467be67b312d0774e3 761 Pfam PF00512 His Kinase A (phospho-acceptor) domain 508 575 3.1E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19610 4b57ecb83ebeb2b5a2c1744a234c2e5c 359 PANTHER PTHR11835 1 359 1.2E-204 T 26-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RGE_RS19610 4b57ecb83ebeb2b5a2c1744a234c2e5c 359 PANTHER PTHR11835:SF37 1 359 1.2E-204 T 26-04-2016 RGE_RS19610 4b57ecb83ebeb2b5a2c1744a234c2e5c 359 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 26-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RGE_RS19610 4b57ecb83ebeb2b5a2c1744a234c2e5c 359 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 355 2.7E-82 T 26-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RGE_RS19610 4b57ecb83ebeb2b5a2c1744a234c2e5c 359 Gene3D G3DSA:3.40.718.10 5 350 9.1E-112 T 26-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RGE_RS19610 4b57ecb83ebeb2b5a2c1744a234c2e5c 359 SMART SM01329 6 355 1.2E-166 T 26-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RGE_RS19610 4b57ecb83ebeb2b5a2c1744a234c2e5c 359 SUPERFAMILY SSF53659 4 358 4.03E-111 T 26-04-2016 RGE_RS19610 4b57ecb83ebeb2b5a2c1744a234c2e5c 359 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 3 357 1.0E-158 T 26-04-2016 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 RGE_RS08665 f5538210e836e22d8e5fb4dde1dfac19 525 SMART SM00304 220 272 5.6E-13 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS08665 f5538210e836e22d8e5fb4dde1dfac19 525 Pfam PF12729 Four helix bundle sensory module for signal transduction 8 189 3.0E-17 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS08665 f5538210e836e22d8e5fb4dde1dfac19 525 PANTHER PTHR32089:SF63 163 523 1.8E-151 T 26-04-2016 RGE_RS08665 f5538210e836e22d8e5fb4dde1dfac19 525 Pfam PF00672 HAMP domain 201 268 2.2E-16 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS08665 f5538210e836e22d8e5fb4dde1dfac19 525 SUPERFAMILY SSF58104 240 521 2.62E-73 T 26-04-2016 RGE_RS08665 f5538210e836e22d8e5fb4dde1dfac19 525 Gene3D G3DSA:1.10.287.950 288 492 3.2E-59 T 26-04-2016 RGE_RS08665 f5538210e836e22d8e5fb4dde1dfac19 525 SMART SM00283 273 520 6.0E-94 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS08665 f5538210e836e22d8e5fb4dde1dfac19 525 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 519 4.1E-60 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS08665 f5538210e836e22d8e5fb4dde1dfac19 525 PANTHER PTHR32089 163 523 1.8E-151 T 26-04-2016 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 Gene3D G3DSA:1.10.1060.10 3 146 5.0E-42 T 26-04-2016 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 PANTHER PTHR11938:SF75 27 330 1.3E-156 T 26-04-2016 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 PANTHER PTHR11938:SF75 346 480 1.3E-156 T 26-04-2016 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 24 131 3.6E-25 T 26-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 SUPERFAMILY SSF51971 381 481 5.41E-10 T 26-04-2016 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 Gene3D G3DSA:3.50.50.60 247 411 6.6E-43 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 SUPERFAMILY SSF46548 2 154 1.1E-40 T 26-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 487 1.4E-224 T 26-04-2016 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 144 328 6.2E-22 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 Gene3D G3DSA:3.40.50.720 415 486 2.5E-38 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 Gene3D G3DSA:3.40.50.720 147 246 2.5E-38 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 PRINTS PR00419 Adrenodoxin reductase family signature 297 311 8.8E-21 T 26-04-2016 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 PRINTS PR00419 Adrenodoxin reductase family signature 168 181 8.8E-21 T 26-04-2016 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 PRINTS PR00419 Adrenodoxin reductase family signature 145 167 8.8E-21 T 26-04-2016 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 SUPERFAMILY SSF51971 142 411 9.42E-67 T 26-04-2016 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 PANTHER PTHR11938 27 330 1.3E-156 T 26-04-2016 RGE_RS04060 ea3023fef95dfef2ab66f3fb387e15c0 488 PANTHER PTHR11938 346 480 1.3E-156 T 26-04-2016 RGE_RS09165 6185aec4fb211c7b61963eee26057e46 241 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 3 231 1.1E-65 T 26-04-2016 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 RGE_RS09165 6185aec4fb211c7b61963eee26057e46 241 Gene3D G3DSA:3.40.1010.10 3 130 5.8E-25 T 26-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RGE_RS09165 6185aec4fb211c7b61963eee26057e46 241 SUPERFAMILY SSF53790 3 234 4.94E-43 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09165 6185aec4fb211c7b61963eee26057e46 241 PANTHER PTHR21091:SF127 62 176 5.6E-43 T 26-04-2016 RGE_RS09165 6185aec4fb211c7b61963eee26057e46 241 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 214 1.4E-39 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09165 6185aec4fb211c7b61963eee26057e46 241 PANTHER PTHR21091:SF127 2 41 5.6E-43 T 26-04-2016 RGE_RS09165 6185aec4fb211c7b61963eee26057e46 241 PIRSF PIRSF036427 1 238 4.6E-61 T 26-04-2016 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 RGE_RS09165 6185aec4fb211c7b61963eee26057e46 241 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 97 129 - T 26-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RGE_RS09165 6185aec4fb211c7b61963eee26057e46 241 PANTHER PTHR21091 2 41 5.6E-43 T 26-04-2016 RGE_RS09165 6185aec4fb211c7b61963eee26057e46 241 PANTHER PTHR21091 62 176 5.6E-43 T 26-04-2016 RGE_RS11400 1a422218487ca6aca69c49d022fe14f6 720 Gene3D G3DSA:2.170.130.10 23 159 4.7E-20 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS11400 1a422218487ca6aca69c49d022fe14f6 720 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 150 3.6E-11 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS11400 1a422218487ca6aca69c49d022fe14f6 720 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 63 720 2.5E-76 T 26-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 RGE_RS11400 1a422218487ca6aca69c49d022fe14f6 720 Gene3D G3DSA:2.40.170.20 168 720 2.3E-80 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS11400 1a422218487ca6aca69c49d022fe14f6 720 SUPERFAMILY SSF56935 20 720 3.91E-90 T 26-04-2016 RGE_RS11400 1a422218487ca6aca69c49d022fe14f6 720 PANTHER PTHR32552 55 720 7.4E-28 T 26-04-2016 RGE_RS11400 1a422218487ca6aca69c49d022fe14f6 720 Pfam PF00593 TonB dependent receptor 474 719 2.9E-18 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 PANTHER PTHR30154 1 152 2.3E-52 T 26-04-2016 RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 1.4E-18 T 26-04-2016 RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 Gene3D G3DSA:1.10.10.10 2 52 5.5E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 SUPERFAMILY SSF54909 61 150 3.22E-17 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 Gene3D G3DSA:3.30.70.920 54 138 3.3E-22 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 9.1E-17 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 9.1E-17 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 9.1E-17 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 26-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 SUPERFAMILY SSF46785 1 91 3.06E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 Pfam PF01037 Lrp/AsnC ligand binding domain 67 139 2.2E-16 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 SMART SM00344 1 110 1.3E-38 T 26-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RGE_RS01375 81e3ca388e71d0bdbfbf6c188a7e2be0 157 PANTHER PTHR30154:SF28 1 152 2.3E-52 T 26-04-2016 RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 Pfam PF02926 THUMP domain 36 154 1.4E-8 T 26-04-2016 IPR004114 THUMP domain GO:0003723 RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 Pfam PF01170 Putative RNA methylase family UPF0020 174 326 1.9E-32 T 26-04-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 Gene3D G3DSA:3.40.50.150 261 400 3.6E-30 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 Gene3D G3DSA:3.40.50.150 163 223 3.6E-30 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 PANTHER PTHR14911:SF13 349 397 1.0E-42 T 26-04-2016 RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 PANTHER PTHR14911:SF13 2 221 1.0E-42 T 26-04-2016 RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 PANTHER PTHR14911:SF13 261 330 1.0E-42 T 26-04-2016 RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 SMART SM00981 57 155 1.0E-18 T 26-04-2016 IPR004114 THUMP domain GO:0003723 RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 PANTHER PTHR14911 349 397 1.0E-42 T 26-04-2016 RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 PANTHER PTHR14911 2 221 1.0E-42 T 26-04-2016 RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 PANTHER PTHR14911 261 330 1.0E-42 T 26-04-2016 RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 SUPERFAMILY SSF53335 147 226 1.37E-29 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS22470 17656e1a6e16cc1d85d263be7f8a355f 412 SUPERFAMILY SSF53335 264 399 1.37E-29 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS09075 4453a01fd3f67d1e908905278b35309a 164 PIRSF PIRSF006181 6 162 1.2E-44 T 26-04-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC RGE_RS09075 4453a01fd3f67d1e908905278b35309a 164 PANTHER PTHR30411 11 149 1.7E-45 T 26-04-2016 RGE_RS09075 4453a01fd3f67d1e908905278b35309a 164 PANTHER PTHR30411:SF0 11 149 1.7E-45 T 26-04-2016 RGE_RS09075 4453a01fd3f67d1e908905278b35309a 164 Pfam PF04073 Aminoacyl-tRNA editing domain 38 147 1.2E-25 T 26-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RGE_RS09075 4453a01fd3f67d1e908905278b35309a 164 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 11 150 2.3E-46 T 26-04-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC RGE_RS09075 4453a01fd3f67d1e908905278b35309a 164 Gene3D G3DSA:3.90.960.10 5 159 2.0E-46 T 26-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RGE_RS09075 4453a01fd3f67d1e908905278b35309a 164 SUPERFAMILY SSF55826 11 160 9.68E-40 T 26-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RGE_RS06895 9cc043b02d33bec5523305a6c86c78d8 232 SUPERFAMILY SSF55120 61 225 3.04E-41 T 26-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS06895 9cc043b02d33bec5523305a6c86c78d8 232 Gene3D G3DSA:3.10.290.10 1 63 3.4E-6 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS06895 9cc043b02d33bec5523305a6c86c78d8 232 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 100 114 - T 26-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RGE_RS06895 9cc043b02d33bec5523305a6c86c78d8 232 PANTHER PTHR21600 1 228 1.3E-43 T 26-04-2016 RGE_RS06895 9cc043b02d33bec5523305a6c86c78d8 232 Pfam PF01479 S4 domain 1 38 1.8E-5 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS06895 9cc043b02d33bec5523305a6c86c78d8 232 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 221 2.3E-38 T 26-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RGE_RS06895 9cc043b02d33bec5523305a6c86c78d8 232 Pfam PF00849 RNA pseudouridylate synthase 62 193 7.3E-17 T 26-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS06895 9cc043b02d33bec5523305a6c86c78d8 232 PANTHER PTHR21600:SF19 1 228 1.3E-43 T 26-04-2016 RGE_RS06895 9cc043b02d33bec5523305a6c86c78d8 232 SUPERFAMILY SSF55174 1 51 2.94E-6 T 26-04-2016 RGE_RS07595 ddda9a416319380fd6eec77bb0a3fd15 174 Pfam PF07743 HSCB C-terminal oligomerisation domain 91 164 3.2E-16 T 26-04-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 RGE_RS07595 ddda9a416319380fd6eec77bb0a3fd15 174 PANTHER PTHR14021:SF15 8 167 1.6E-36 T 26-04-2016 RGE_RS07595 ddda9a416319380fd6eec77bb0a3fd15 174 Gene3D G3DSA:1.10.287.110 5 76 2.4E-22 T 26-04-2016 IPR001623 DnaJ domain RGE_RS07595 ddda9a416319380fd6eec77bb0a3fd15 174 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 18 166 3.3E-27 T 26-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 RGE_RS07595 ddda9a416319380fd6eec77bb0a3fd15 174 Gene3D G3DSA:1.20.1280.20 85 170 8.1E-24 T 26-04-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 RGE_RS07595 ddda9a416319380fd6eec77bb0a3fd15 174 SUPERFAMILY SSF46565 6 78 2.36E-16 T 26-04-2016 IPR001623 DnaJ domain RGE_RS07595 ddda9a416319380fd6eec77bb0a3fd15 174 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 5 171 20.822 T 26-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 RGE_RS07595 ddda9a416319380fd6eec77bb0a3fd15 174 PANTHER PTHR14021 8 167 1.6E-36 T 26-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 RGE_RS07595 ddda9a416319380fd6eec77bb0a3fd15 174 SMART SM00271 5 70 1.0E-5 T 26-04-2016 IPR001623 DnaJ domain RGE_RS07595 ddda9a416319380fd6eec77bb0a3fd15 174 SUPERFAMILY SSF47144 83 170 2.35E-17 T 26-04-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 Pfam PF04963 Sigma-54 factor, core binding domain 134 330 1.4E-52 T 26-04-2016 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 389 408 - T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 PRINTS PR00045 Sigma-54 factor signature 475 493 4.4E-30 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 PRINTS PR00045 Sigma-54 factor signature 214 231 4.4E-30 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 PRINTS PR00045 Sigma-54 factor signature 401 413 4.4E-30 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 PRINTS PR00045 Sigma-54 factor signature 417 428 4.4E-30 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 PANTHER PTHR32248 1 501 1.7E-135 T 26-04-2016 RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 480 487 - T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 Pfam PF04552 Sigma-54, DNA binding domain 345 499 1.1E-64 T 26-04-2016 IPR007634 RNA polymerase sigma factor 54, DNA-binding RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 PIRSF PIRSF000774 1 501 3.5E-164 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 499 7.5E-131 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 4 49 2.2E-16 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS22465 313ce63849db2fb665a6544250e7a6e3 501 PANTHER PTHR32248:SF4 1 501 1.7E-135 T 26-04-2016 RGE_RS20265 8397869411bc09f66cf5209569f9e3cb 181 Gene3D G3DSA:2.30.110.10 6 178 4.8E-33 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS20265 8397869411bc09f66cf5209569f9e3cb 181 Pfam PF12766 Pyridoxamine 5'-phosphate oxidase 27 100 4.1E-6 T 26-04-2016 IPR024624 Pyridoxamine 5'-phosphate oxidase, Alr4036 family, FMN-binding domain GO:0010181 RGE_RS20265 8397869411bc09f66cf5209569f9e3cb 181 SUPERFAMILY SSF50475 26 181 1.54E-13 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS13165 a41ff963f12b6dc7fd7f0679dbf2783c 363 Gene3D G3DSA:3.40.50.1400 217 336 3.4E-37 T 26-04-2016 RGE_RS13165 a41ff963f12b6dc7fd7f0679dbf2783c 363 SUPERFAMILY SSF53800 15 339 3.27E-109 T 26-04-2016 RGE_RS13165 a41ff963f12b6dc7fd7f0679dbf2783c 363 Pfam PF00762 Ferrochelatase 17 334 1.2E-112 T 26-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RGE_RS13165 a41ff963f12b6dc7fd7f0679dbf2783c 363 TIGRFAM TIGR00109 hemH: ferrochelatase 15 332 1.1E-92 T 26-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RGE_RS13165 a41ff963f12b6dc7fd7f0679dbf2783c 363 Gene3D G3DSA:3.40.50.1400 16 216 2.0E-70 T 26-04-2016 RGE_RS13165 a41ff963f12b6dc7fd7f0679dbf2783c 363 Hamap MF_00323 Ferrochelatase [hemH]. 15 335 37.254 T 26-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RGE_RS13165 a41ff963f12b6dc7fd7f0679dbf2783c 363 PANTHER PTHR11108 15 334 6.3E-119 T 26-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RGE_RS17180 c0780aa96246ffdc71464d47f9099744 516 Gene3D G3DSA:3.90.1200.10 135 294 3.3E-7 T 26-04-2016 RGE_RS17180 c0780aa96246ffdc71464d47f9099744 516 Pfam PF13671 AAA domain 341 486 9.4E-28 T 26-04-2016 RGE_RS17180 c0780aa96246ffdc71464d47f9099744 516 SUPERFAMILY SSF52540 340 468 2.96E-16 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17180 c0780aa96246ffdc71464d47f9099744 516 PANTHER PTHR12083:SF8 14 373 7.6E-111 T 26-04-2016 RGE_RS17180 c0780aa96246ffdc71464d47f9099744 516 PANTHER PTHR12083:SF8 402 485 7.6E-111 T 26-04-2016 RGE_RS17180 c0780aa96246ffdc71464d47f9099744 516 SUPERFAMILY SSF56112 38 315 6.63E-17 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS17180 c0780aa96246ffdc71464d47f9099744 516 Gene3D G3DSA:3.40.50.300 340 472 1.3E-16 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17180 c0780aa96246ffdc71464d47f9099744 516 Pfam PF01636 Phosphotransferase enzyme family 68 288 5.4E-6 T 26-04-2016 IPR002575 Aminoglycoside phosphotransferase RGE_RS17180 c0780aa96246ffdc71464d47f9099744 516 PANTHER PTHR12083 14 373 7.6E-111 T 26-04-2016 RGE_RS17180 c0780aa96246ffdc71464d47f9099744 516 PANTHER PTHR12083 402 485 7.6E-111 T 26-04-2016 RGE_RS15880 cf941f97e902430aec0a61fe67d5eda1 158 Pfam PF00578 AhpC/TSA family 5 133 1.1E-30 T 26-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RGE_RS15880 cf941f97e902430aec0a61fe67d5eda1 158 PANTHER PTHR10681 3 154 1.3E-36 T 26-04-2016 RGE_RS15880 cf941f97e902430aec0a61fe67d5eda1 158 Gene3D G3DSA:3.40.30.10 3 155 2.8E-44 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS15880 cf941f97e902430aec0a61fe67d5eda1 158 PIRSF PIRSF000239 1 158 1.9E-30 T 26-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 RGE_RS15880 cf941f97e902430aec0a61fe67d5eda1 158 SUPERFAMILY SSF52833 4 154 2.43E-47 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS22405 7c263a6aea841c044a1264fce38e1caa 124 SUPERFAMILY SSF57716 87 121 3.99E-9 T 26-04-2016 RGE_RS22405 7c263a6aea841c044a1264fce38e1caa 124 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 85 120 1.4E-12 T 26-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RGE_RS22405 7c263a6aea841c044a1264fce38e1caa 124 PANTHER PTHR33823 3 121 2.0E-15 T 26-04-2016 RGE_RS22405 7c263a6aea841c044a1264fce38e1caa 124 SUPERFAMILY SSF109635 4 86 1.57E-5 T 26-04-2016 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 SMART SM00388 523 591 8.0E-12 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 PANTHER PTHR24423 374 742 6.2E-108 T 26-04-2016 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 Gene3D G3DSA:3.30.565.10 593 743 6.9E-34 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 PRINTS PR00344 Bacterial sensor protein C-terminal signature 671 685 7.5E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 PRINTS PR00344 Bacterial sensor protein C-terminal signature 704 722 7.5E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 PRINTS PR00344 Bacterial sensor protein C-terminal signature 728 741 7.5E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 SMART SM00304 315 369 5.7E-4 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 Pfam PF00512 His Kinase A (phospho-acceptor) domain 525 587 2.8E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 SUPERFAMILY SSF47384 509 587 2.75E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 SMART SM00387 632 744 3.5E-26 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 Pfam PF00672 HAMP domain 295 365 6.8E-11 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 SUPERFAMILY SSF55874 593 743 1.05E-35 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 632 743 5.7E-18 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 SUPERFAMILY SSF55785 393 501 6.88E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 Gene3D G3DSA:3.30.450.20 91 191 5.1E-6 T 26-04-2016 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 376 499 9.3E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 PANTHER PTHR24423:SF383 374 742 6.2E-108 T 26-04-2016 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 Gene3D G3DSA:3.30.450.20 366 490 6.3E-14 T 26-04-2016 RGE_RS11095 f0cc4db14888c7fbdba95a3be8ed12ab 754 Gene3D G3DSA:1.10.287.130 516 587 1.5E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23330 f2abeb5d2a8b2bcf412ed465d2cf7b6a 405 Gene3D G3DSA:3.50.50.60 139 216 1.6E-50 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS23330 f2abeb5d2a8b2bcf412ed465d2cf7b6a 405 Gene3D G3DSA:3.50.50.60 324 381 1.6E-50 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS23330 f2abeb5d2a8b2bcf412ed465d2cf7b6a 405 Gene3D G3DSA:3.50.50.60 4 82 1.6E-50 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS23330 f2abeb5d2a8b2bcf412ed465d2cf7b6a 405 Gene3D G3DSA:3.30.9.10 100 138 7.7E-17 T 26-04-2016 RGE_RS23330 f2abeb5d2a8b2bcf412ed465d2cf7b6a 405 Gene3D G3DSA:3.30.9.10 217 323 7.7E-17 T 26-04-2016 RGE_RS23330 f2abeb5d2a8b2bcf412ed465d2cf7b6a 405 SUPERFAMILY SSF51905 5 217 1.25E-50 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS23330 f2abeb5d2a8b2bcf412ed465d2cf7b6a 405 SUPERFAMILY SSF51905 324 381 1.25E-50 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS23330 f2abeb5d2a8b2bcf412ed465d2cf7b6a 405 Pfam PF01266 FAD dependent oxidoreductase 5 362 7.3E-52 T 26-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RGE_RS23330 f2abeb5d2a8b2bcf412ed465d2cf7b6a 405 PANTHER PTHR13847 2 386 2.8E-56 T 26-04-2016 RGE_RS23330 f2abeb5d2a8b2bcf412ed465d2cf7b6a 405 SUPERFAMILY SSF54373 217 323 1.18E-5 T 26-04-2016 RGE_RS19690 6536f433668f9da64f21acb4d8bafe19 192 Gene3D G3DSA:2.30.110.10 5 120 3.4E-38 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS19690 6536f433668f9da64f21acb4d8bafe19 192 SUPERFAMILY SSF50475 3 181 1.05E-53 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS19690 6536f433668f9da64f21acb4d8bafe19 192 Gene3D G3DSA:1.20.58.290 121 182 2.1E-23 T 26-04-2016 RGE_RS19690 6536f433668f9da64f21acb4d8bafe19 192 Pfam PF04289 Protein of unknown function (DUF447) 8 179 4.9E-49 T 26-04-2016 IPR007386 Protein of unknown function DUF447 RGE_RS23395 7614a1654d9b7613e1e831efbdb65a22 213 Gene3D G3DSA:3.40.109.10 2 203 1.1E-37 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS23395 7614a1654d9b7613e1e831efbdb65a22 213 Pfam PF00881 Nitroreductase family 6 169 5.9E-22 T 26-04-2016 IPR029479 Nitroreductase RGE_RS23395 7614a1654d9b7613e1e831efbdb65a22 213 PANTHER PTHR21712 3 212 3.0E-59 T 26-04-2016 RGE_RS23395 7614a1654d9b7613e1e831efbdb65a22 213 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 2 193 6.9E-62 T 26-04-2016 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5508|MetaCyc: PWY-5523 RGE_RS23395 7614a1654d9b7613e1e831efbdb65a22 213 PANTHER PTHR21712:SF31 3 212 3.0E-59 T 26-04-2016 RGE_RS23395 7614a1654d9b7613e1e831efbdb65a22 213 SUPERFAMILY SSF55469 3 203 3.93E-40 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS10250 78201dbd28dd498fcc985e0c530fdc22 193 PIRSF PIRSF006102 2 193 4.3E-55 T 26-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 RGE_RS10250 78201dbd28dd498fcc985e0c530fdc22 193 PANTHER PTHR30335 4 191 1.4E-87 T 26-04-2016 RGE_RS10250 78201dbd28dd498fcc985e0c530fdc22 193 Hamap MF_00459 Electron transport complex subunit RsxA [rsxA]. 4 192 22.78 T 26-04-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 RGE_RS10250 78201dbd28dd498fcc985e0c530fdc22 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 7 191 3.9E-57 T 26-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 RGE_RS10250 78201dbd28dd498fcc985e0c530fdc22 193 PANTHER PTHR30335:SF0 4 191 1.4E-87 T 26-04-2016 RGE_RS10250 78201dbd28dd498fcc985e0c530fdc22 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 6 191 1.2E-72 T 26-04-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 RGE_RS20765 e8d30c06d84a8a858388d61078461604 515 SUPERFAMILY SSF58104 230 511 5.1E-72 T 26-04-2016 RGE_RS20765 e8d30c06d84a8a858388d61078461604 515 Gene3D G3DSA:1.10.287.950 278 482 1.2E-60 T 26-04-2016 RGE_RS20765 e8d30c06d84a8a858388d61078461604 515 SMART SM00283 263 510 3.5E-98 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS20765 e8d30c06d84a8a858388d61078461604 515 Pfam PF00672 HAMP domain 194 257 4.9E-14 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS20765 e8d30c06d84a8a858388d61078461604 515 PANTHER PTHR32089:SF63 184 513 1.3E-145 T 26-04-2016 RGE_RS20765 e8d30c06d84a8a858388d61078461604 515 PANTHER PTHR32089:SF63 54 107 1.3E-145 T 26-04-2016 RGE_RS20765 e8d30c06d84a8a858388d61078461604 515 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 322 509 1.1E-60 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS20765 e8d30c06d84a8a858388d61078461604 515 SMART SM00304 210 262 3.6E-10 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS20765 e8d30c06d84a8a858388d61078461604 515 PANTHER PTHR32089 184 513 1.3E-145 T 26-04-2016 RGE_RS20765 e8d30c06d84a8a858388d61078461604 515 PANTHER PTHR32089 54 107 1.3E-145 T 26-04-2016 RGE_RS20765 e8d30c06d84a8a858388d61078461604 515 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 182 9.3E-11 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS14880 d7553d7334704c91d58ac04f83b080b6 379 Gene3D G3DSA:2.120.10.30 18 369 4.1E-35 T 26-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RGE_RS14880 d7553d7334704c91d58ac04f83b080b6 379 PANTHER PTHR10680 113 370 9.2E-46 T 26-04-2016 RGE_RS14880 d7553d7334704c91d58ac04f83b080b6 379 PANTHER PTHR10680 5 97 9.2E-46 T 26-04-2016 RGE_RS14880 d7553d7334704c91d58ac04f83b080b6 379 Pfam PF01436 NHL repeat 249 272 1.9E-4 T 26-04-2016 IPR001258 NHL repeat GO:0005515 RGE_RS14880 d7553d7334704c91d58ac04f83b080b6 379 SUPERFAMILY SSF63829 38 363 1.18E-23 T 26-04-2016 RGE_RS01650 0d18b7cc428841877653bef5b4a328e3 65 Pfam PF00831 Ribosomal L29 protein 4 60 1.6E-19 T 26-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01650 0d18b7cc428841877653bef5b4a328e3 65 Gene3D G3DSA:1.10.287.310 1 61 4.3E-23 T 26-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01650 0d18b7cc428841877653bef5b4a328e3 65 SUPERFAMILY SSF46561 1 63 8.9E-19 T 26-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01650 0d18b7cc428841877653bef5b4a328e3 65 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 16.709 T 26-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01650 0d18b7cc428841877653bef5b4a328e3 65 PANTHER PTHR10916 1 64 3.1E-18 T 26-04-2016 RGE_RS01650 0d18b7cc428841877653bef5b4a328e3 65 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 26-04-2016 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01650 0d18b7cc428841877653bef5b4a328e3 65 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 4.8E-17 T 26-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS02895 44e728523aaa39c9f7ace0f153a9e091 246 SMART SM00382 29 208 2.9E-8 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS02895 44e728523aaa39c9f7ace0f153a9e091 246 PANTHER PTHR24220 6 226 4.0E-57 T 26-04-2016 RGE_RS02895 44e728523aaa39c9f7ace0f153a9e091 246 Gene3D G3DSA:3.40.50.300 3 224 9.0E-49 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02895 44e728523aaa39c9f7ace0f153a9e091 246 PANTHER PTHR24220:SF581 6 226 4.0E-57 T 26-04-2016 RGE_RS02895 44e728523aaa39c9f7ace0f153a9e091 246 Pfam PF00005 ABC transporter 21 160 1.3E-22 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS02895 44e728523aaa39c9f7ace0f153a9e091 246 SUPERFAMILY SSF52540 4 220 2.33E-46 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02895 44e728523aaa39c9f7ace0f153a9e091 246 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS08180 132918e7c9d0e7f4207a90c554015512 307 PANTHER PTHR22911:SF6 2 288 1.2E-36 T 26-04-2016 RGE_RS08180 132918e7c9d0e7f4207a90c554015512 307 Pfam PF00892 EamA-like transporter family 14 145 2.0E-8 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS08180 132918e7c9d0e7f4207a90c554015512 307 PANTHER PTHR22911 2 288 1.2E-36 T 26-04-2016 RGE_RS08180 132918e7c9d0e7f4207a90c554015512 307 SUPERFAMILY SSF103481 46 148 3.92E-9 T 26-04-2016 RGE_RS08180 132918e7c9d0e7f4207a90c554015512 307 SUPERFAMILY SSF103481 197 289 1.83E-8 T 26-04-2016 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 144 165 1.0E-22 T 26-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 1.0E-22 T 26-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 1.0E-22 T 26-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 1 174 1.3E-59 T 26-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 PANTHER PTHR10055 2 170 6.1E-163 T 26-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 PANTHER PTHR10055 245 402 6.1E-163 T 26-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 Gene3D G3DSA:1.10.240.10 278 367 2.2E-31 T 26-04-2016 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 Pfam PF00579 tRNA synthetases class I (W and Y) 246 352 1.6E-11 T 26-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 Pfam PF00579 tRNA synthetases class I (W and Y) 3 184 1.4E-50 T 26-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 20 - T 26-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 SUPERFAMILY SSF52374 3 171 1.33E-88 T 26-04-2016 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 SUPERFAMILY SSF52374 246 400 1.33E-88 T 26-04-2016 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 2 401 35.626 T 26-04-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 Gene3D G3DSA:3.40.50.620 244 277 2.6E-88 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 Gene3D G3DSA:3.40.50.620 2 169 2.6E-88 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 PANTHER PTHR10055:SF6 2 170 6.1E-163 T 26-04-2016 RGE_RS16675 51a527ce7949c3af4776cd93296f0a43 402 PANTHER PTHR10055:SF6 245 402 6.1E-163 T 26-04-2016 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 SUPERFAMILY SSF55785 431 558 4.89E-23 T 26-04-2016 IPR000014 PAS domain RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 Gene3D G3DSA:3.30.450.20 433 558 1.5E-21 T 26-04-2016 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 SMART SM00387 692 804 4.3E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 Gene3D G3DSA:3.30.565.10 633 802 9.7E-45 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 Pfam PF08448 PAS fold 332 434 4.9E-11 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 Pfam PF08448 PAS fold 452 562 1.1E-13 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 PANTHER PTHR24423 306 803 2.9E-117 T 26-04-2016 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 SMART SM00388 580 646 1.0E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 SUPERFAMILY SSF55874 635 802 2.75E-44 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 Gene3D G3DSA:1.10.287.130 574 632 2.2E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 693 802 2.3E-27 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 SMART SM00091 325 391 4.4E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 SMART SM00091 446 512 0.048 T 26-04-2016 IPR000014 PAS domain RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 SUPERFAMILY SSF55785 336 443 4.83E-15 T 26-04-2016 IPR000014 PAS domain RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 SUPERFAMILY SSF47384 566 645 1.59E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 443 566 5.7E-15 T 26-04-2016 IPR000014 PAS domain RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 323 441 1.4E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 Gene3D G3DSA:3.30.450.20 316 432 3.3E-14 T 26-04-2016 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 Pfam PF00512 His Kinase A (phospho-acceptor) domain 580 645 6.1E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 PRINTS PR00344 Bacterial sensor protein C-terminal signature 764 782 1.1E-18 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 PRINTS PR00344 Bacterial sensor protein C-terminal signature 748 758 1.1E-18 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 PRINTS PR00344 Bacterial sensor protein C-terminal signature 788 801 1.1E-18 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22025 e743af0b26c1d2e656c4f5230eea261b 810 PRINTS PR00344 Bacterial sensor protein C-terminal signature 730 744 1.1E-18 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04440 1a10010544bb0821867b80afa796bf12 402 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 72 301 9.2E-11 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS04440 1a10010544bb0821867b80afa796bf12 402 Gene3D G3DSA:2.40.50.100 72 105 3.2E-21 T 26-04-2016 RGE_RS04440 1a10010544bb0821867b80afa796bf12 402 Gene3D G3DSA:2.40.50.100 180 214 3.2E-21 T 26-04-2016 RGE_RS04440 1a10010544bb0821867b80afa796bf12 402 PANTHER PTHR30158:SF3 2 402 4.7E-142 T 26-04-2016 RGE_RS04440 1a10010544bb0821867b80afa796bf12 402 SUPERFAMILY SSF111369 60 306 1.18E-75 T 26-04-2016 RGE_RS04440 1a10010544bb0821867b80afa796bf12 402 PANTHER PTHR30158 2 402 4.7E-142 T 26-04-2016 RGE_RS04440 1a10010544bb0821867b80afa796bf12 402 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 383 2.5E-79 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 26-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 Hamap MF_00098 Methionine--tRNA ligase [metG]. 3 557 38.856 T 26-04-2016 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 Gene3D G3DSA:3.40.50.620 3 141 1.0E-83 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS17935 19ed78b505405f54302068d30959e16d 685 Gene3D G3DSA:3.40.50.620 180 388 1.0E-83 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS17935 19ed78b505405f54302068d30959e16d 685 Pfam PF01588 Putative tRNA binding domain 585 678 1.3E-21 T 26-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 571 685 1.8E-37 T 26-04-2016 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 SUPERFAMILY SSF52374 3 138 1.78E-92 T 26-04-2016 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 SUPERFAMILY SSF52374 173 396 1.78E-92 T 26-04-2016 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 SUPERFAMILY SSF47323 398 556 1.23E-39 T 26-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 PANTHER PTHR11946:SF86 3 270 9.7E-194 T 26-04-2016 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 PANTHER PTHR11946:SF86 296 636 9.7E-194 T 26-04-2016 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 Gene3D G3DSA:2.20.28.20 142 173 2.9E-18 T 26-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 Pfam PF09334 tRNA synthetases class I (M) 6 405 2.5E-140 T 26-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 Gene3D G3DSA:2.40.50.140 573 684 9.9E-40 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS17935 19ed78b505405f54302068d30959e16d 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 39 53 1.5E-23 T 26-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 256 267 1.5E-23 T 26-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 87 98 1.5E-23 T 26-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 1.5E-23 T 26-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 299 314 1.5E-23 T 26-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 393 404 1.5E-23 T 26-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 SUPERFAMILY SSF50249 575 684 3.67E-28 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS17935 19ed78b505405f54302068d30959e16d 685 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 6 546 1.9E-155 T 26-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 PANTHER PTHR11946 3 270 9.7E-194 T 26-04-2016 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 PANTHER PTHR11946 296 636 9.7E-194 T 26-04-2016 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 SUPERFAMILY SSF57770 139 173 4.05E-12 T 26-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RGE_RS17935 19ed78b505405f54302068d30959e16d 685 Gene3D G3DSA:1.10.730.10 389 546 5.4E-42 T 26-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS18740 b6425f215ca7115abf054366db8dda43 561 PANTHER PTHR34597 47 561 2.5E-65 T 26-04-2016 RGE_RS18740 b6425f215ca7115abf054366db8dda43 561 Gene3D G3DSA:3.10.20.310 61 138 1.1E-10 T 26-04-2016 RGE_RS18740 b6425f215ca7115abf054366db8dda43 561 Gene3D G3DSA:2.40.160.50 177 537 2.4E-49 T 26-04-2016 RGE_RS18740 b6425f215ca7115abf054366db8dda43 561 PANTHER PTHR34597:SF1 47 561 2.5E-65 T 26-04-2016 RGE_RS18740 b6425f215ca7115abf054366db8dda43 561 Pfam PF08479 POTRA domain, ShlB-type 67 138 8.4E-14 T 26-04-2016 IPR013686 Polypeptide-transport-associated, ShlB-type RGE_RS08460 5735b1652582395b2276676df490ad60 150 PANTHER PTHR30435:SF12 2 145 2.4E-31 T 26-04-2016 RGE_RS08460 5735b1652582395b2276676df490ad60 150 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 7 144 5.9E-27 T 26-04-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 RGE_RS08460 5735b1652582395b2276676df490ad60 150 PIRSF PIRSF002889 1 147 7.9E-34 T 26-04-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 RGE_RS08460 5735b1652582395b2276676df490ad60 150 Pfam PF00460 Flagella basal body rod protein 9 38 3.4E-9 T 26-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RGE_RS08460 5735b1652582395b2276676df490ad60 150 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 26-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RGE_RS08460 5735b1652582395b2276676df490ad60 150 PANTHER PTHR30435 2 145 2.4E-31 T 26-04-2016 RGE_RS22700 7c2317533381c04ebf89d4354adce980 233 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 12 184 4.9E-67 T 26-04-2016 IPR022301 Integral membrane protein YjbE RGE_RS22700 7c2317533381c04ebf89d4354adce980 233 Pfam PF03741 Integral membrane protein TerC family 14 183 1.0E-41 T 26-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 RGE_RS22700 7c2317533381c04ebf89d4354adce980 233 PANTHER PTHR30060 1 226 3.0E-40 T 26-04-2016 RGE_RS03495 b9278bf04a4b8dc1515682be1516da9c 239 Gene3D G3DSA:2.40.50.40 134 199 3.2E-7 T 26-04-2016 RGE_RS03495 b9278bf04a4b8dc1515682be1516da9c 239 PANTHER PTHR26402 2 116 1.9E-32 T 26-04-2016 RGE_RS03495 b9278bf04a4b8dc1515682be1516da9c 239 Pfam PF04397 LytTr DNA-binding domain 144 236 6.6E-15 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS03495 b9278bf04a4b8dc1515682be1516da9c 239 SUPERFAMILY SSF52172 1 119 9.82E-30 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS03495 b9278bf04a4b8dc1515682be1516da9c 239 PANTHER PTHR26402:SF524 2 116 1.9E-32 T 26-04-2016 RGE_RS03495 b9278bf04a4b8dc1515682be1516da9c 239 Gene3D G3DSA:3.40.50.2300 1 116 9.3E-29 T 26-04-2016 RGE_RS03495 b9278bf04a4b8dc1515682be1516da9c 239 SMART SM00850 142 237 1.4E-17 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS03495 b9278bf04a4b8dc1515682be1516da9c 239 Pfam PF00072 Response regulator receiver domain 5 110 3.5E-21 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS03495 b9278bf04a4b8dc1515682be1516da9c 239 SMART SM00448 2 112 1.6E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS20520 55368d8c57160f4a6cb33332bb0a0178 121 Pfam PF00072 Response regulator receiver domain 6 118 1.8E-30 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS20520 55368d8c57160f4a6cb33332bb0a0178 121 PANTHER PTHR26402 4 119 3.4E-43 T 26-04-2016 RGE_RS20520 55368d8c57160f4a6cb33332bb0a0178 121 SMART SM00448 4 117 3.5E-41 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS20520 55368d8c57160f4a6cb33332bb0a0178 121 SUPERFAMILY SSF52172 5 120 4.27E-39 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS20520 55368d8c57160f4a6cb33332bb0a0178 121 Gene3D G3DSA:3.40.50.2300 5 119 2.6E-40 T 26-04-2016 RGE_RS11980 c9d7fa3d2d35a96ab00502b2fae54c47 149 PANTHER PTHR30204 6 114 2.0E-28 T 26-04-2016 RGE_RS11980 c9d7fa3d2d35a96ab00502b2fae54c47 149 Pfam PF13411 MerR HTH family regulatory protein 14 82 1.7E-22 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS11980 c9d7fa3d2d35a96ab00502b2fae54c47 149 Gene3D G3DSA:1.10.1660.10 14 116 2.3E-17 T 26-04-2016 RGE_RS11980 c9d7fa3d2d35a96ab00502b2fae54c47 149 SUPERFAMILY SSF46955 14 109 4.3E-18 T 26-04-2016 IPR009061 Putative DNA-binding domain RGE_RS11980 c9d7fa3d2d35a96ab00502b2fae54c47 149 PANTHER PTHR30204:SF15 6 114 2.0E-28 T 26-04-2016 RGE_RS11980 c9d7fa3d2d35a96ab00502b2fae54c47 149 SMART SM00422 14 84 1.5E-7 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS19410 1daf67c4ca122f24d13f03ddba5b542c 485 Gene3D G3DSA:3.90.1150.10 330 472 3.4E-17 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS19410 1daf67c4ca122f24d13f03ddba5b542c 485 SMART SM00345 11 70 9.9E-12 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS19410 1daf67c4ca122f24d13f03ddba5b542c 485 Gene3D G3DSA:3.40.640.10 130 329 3.9E-41 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS19410 1daf67c4ca122f24d13f03ddba5b542c 485 Pfam PF00155 Aminotransferase class I and II 145 452 4.4E-23 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS19410 1daf67c4ca122f24d13f03ddba5b542c 485 PANTHER PTHR11751 91 473 1.4E-115 T 26-04-2016 RGE_RS19410 1daf67c4ca122f24d13f03ddba5b542c 485 SUPERFAMILY SSF46785 5 74 4.67E-17 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19410 1daf67c4ca122f24d13f03ddba5b542c 485 PANTHER PTHR11751:SF314 91 473 1.4E-115 T 26-04-2016 RGE_RS19410 1daf67c4ca122f24d13f03ddba5b542c 485 SUPERFAMILY SSF53383 104 473 1.03E-79 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS19410 1daf67c4ca122f24d13f03ddba5b542c 485 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 70 3.2E-11 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS19410 1daf67c4ca122f24d13f03ddba5b542c 485 Gene3D G3DSA:1.10.10.10 4 71 1.2E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS15330 ee6d5b4769585f80ed9f1e5a2989f320 227 Gene3D G3DSA:1.20.120.530 88 221 2.0E-28 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS15330 ee6d5b4769585f80ed9f1e5a2989f320 227 SMART SM00345 24 82 2.2E-14 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS15330 ee6d5b4769585f80ed9f1e5a2989f320 227 PANTHER PTHR11751 25 108 5.6E-21 T 26-04-2016 RGE_RS15330 ee6d5b4769585f80ed9f1e5a2989f320 227 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 82 1.6E-15 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS15330 ee6d5b4769585f80ed9f1e5a2989f320 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 3.2E-5 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS15330 ee6d5b4769585f80ed9f1e5a2989f320 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 3.2E-5 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS15330 ee6d5b4769585f80ed9f1e5a2989f320 227 SUPERFAMILY SSF46785 15 86 4.4E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS15330 ee6d5b4769585f80ed9f1e5a2989f320 227 Gene3D G3DSA:1.10.10.10 10 83 1.5E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS15330 ee6d5b4769585f80ed9f1e5a2989f320 227 Pfam PF07729 FCD domain 92 213 2.2E-24 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS15330 ee6d5b4769585f80ed9f1e5a2989f320 227 SUPERFAMILY SSF48008 89 221 8.37E-25 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS15330 ee6d5b4769585f80ed9f1e5a2989f320 227 SMART SM00895 92 215 6.5E-18 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS06995 9ac2eb31cf24182199e8fa9c9da15c20 194 Pfam PF01613 Flavin reductase like domain 17 148 9.2E-21 T 26-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RGE_RS06995 9ac2eb31cf24182199e8fa9c9da15c20 194 PANTHER PTHR30466 7 181 1.0E-34 T 26-04-2016 RGE_RS06995 9ac2eb31cf24182199e8fa9c9da15c20 194 SUPERFAMILY SSF50475 6 181 5.4E-42 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS06995 9ac2eb31cf24182199e8fa9c9da15c20 194 SMART SM00903 12 158 7.1E-27 T 26-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RGE_RS06995 9ac2eb31cf24182199e8fa9c9da15c20 194 Gene3D G3DSA:2.30.110.10 4 184 4.7E-51 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS06995 9ac2eb31cf24182199e8fa9c9da15c20 194 PANTHER PTHR30466:SF6 7 181 1.0E-34 T 26-04-2016 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 SUPERFAMILY SSF55785 722 838 3.32E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 SUPERFAMILY SSF47757 222 288 3.4E-12 T 26-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 Pfam PF01739 CheR methyltransferase, SAM binding domain 287 476 1.2E-49 T 26-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 PANTHER PTHR24422 110 851 2.7E-163 T 26-04-2016 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 Gene3D G3DSA:3.30.450.20 732 839 1.5E-7 T 26-04-2016 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 Gene3D G3DSA:3.30.450.20 845 966 4.4E-13 T 26-04-2016 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 PRINTS PR00996 Glutamate methyltransferase family signature 318 338 1.7E-19 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 PRINTS PR00996 Glutamate methyltransferase family signature 354 370 1.7E-19 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 PRINTS PR00996 Glutamate methyltransferase family signature 420 434 1.7E-19 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 PRINTS PR00996 Glutamate methyltransferase family signature 242 255 1.7E-19 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 PRINTS PR00996 Glutamate methyltransferase family signature 439 462 1.7E-19 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 PANTHER PTHR24422:SF6 110 851 2.7E-163 T 26-04-2016 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 Gene3D G3DSA:1.10.155.10 223 279 3.7E-11 T 26-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 Gene3D G3DSA:3.40.50.180 20 201 7.7E-58 T 26-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 Pfam PF01339 CheB methylesterase 23 197 1.6E-51 T 26-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 Pfam PF13596 PAS domain 736 839 9.2E-14 T 26-04-2016 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 SUPERFAMILY SSF52738 21 200 5.62E-52 T 26-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 Pfam PF03705 CheR methyltransferase, all-alpha domain 225 271 1.8E-12 T 26-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 SUPERFAMILY SSF53335 286 475 2.08E-44 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 Pfam PF08448 PAS fold 853 966 5.1E-8 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 Gene3D G3DSA:3.40.50.150 286 479 1.5E-58 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 SUPERFAMILY SSF55785 845 965 1.17E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 SMART SM00091 846 914 4.5 T 26-04-2016 IPR000014 PAS domain RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 SMART SM00091 733 798 0.46 T 26-04-2016 IPR000014 PAS domain RGE_RS22620 0ea1e44876cfe67a2c777779198f7f0c 983 SMART SM00138 220 480 5.2E-81 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 SUPERFAMILY SSF52540 10 239 5.98E-38 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 PANTHER PTHR22942:SF43 8 203 1.3E-44 T 26-04-2016 RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 PANTHER PTHR22942:SF43 435 543 1.3E-44 T 26-04-2016 RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 Pfam PF06745 KaiC 254 471 1.2E-33 T 26-04-2016 IPR014774 KaiC-like domain RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 Pfam PF06745 KaiC 13 239 1.8E-65 T 26-04-2016 IPR014774 KaiC-like domain RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 PANTHER PTHR22942 8 203 1.3E-44 T 26-04-2016 RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 PANTHER PTHR22942 435 543 1.3E-44 T 26-04-2016 RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 PIRSF PIRSF039117 4 528 6.6E-142 T 26-04-2016 IPR030665 Circadian clock protein kinase KaiC KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 PRINTS PR01874 DNA repair protein radA signature 264 292 9.8E-5 T 26-04-2016 RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 PRINTS PR01874 DNA repair protein radA signature 306 323 9.8E-5 T 26-04-2016 RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 SMART SM00382 272 426 0.44 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 SMART SM00382 29 202 3.4 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 SUPERFAMILY SSF52540 252 475 2.22E-39 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 Gene3D G3DSA:3.40.50.300 9 240 5.6E-70 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19345 00a92fb1a6fd39ebcc65b30a2deb2993 566 Gene3D G3DSA:3.40.50.300 244 486 2.6E-72 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 PANTHER PTHR32472 2 448 1.8E-199 T 26-04-2016 RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 Gene3D G3DSA:3.30.230.10 278 448 3.0E-33 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 TIGRFAM TIGR00416 sms: DNA repair protein RadA 2 444 3.3E-184 T 26-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 Gene3D G3DSA:3.40.50.300 55 269 9.1E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 SUPERFAMILY SSF52540 64 287 3.3E-47 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 PRINTS PR01874 DNA repair protein radA signature 207 235 9.3E-94 T 26-04-2016 RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 PRINTS PR01874 DNA repair protein radA signature 315 338 9.3E-94 T 26-04-2016 RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 PRINTS PR01874 DNA repair protein radA signature 8 32 9.3E-94 T 26-04-2016 RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 PRINTS PR01874 DNA repair protein radA signature 168 192 9.3E-94 T 26-04-2016 RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 PRINTS PR01874 DNA repair protein radA signature 77 105 9.3E-94 T 26-04-2016 RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 PRINTS PR01874 DNA repair protein radA signature 118 135 9.3E-94 T 26-04-2016 RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 PRINTS PR01874 DNA repair protein radA signature 242 268 9.3E-94 T 26-04-2016 RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 SMART SM00382 85 238 4.1E-6 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 SUPERFAMILY SSF54211 297 449 3.79E-40 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 SUPERFAMILY SSF54211 249 263 3.79E-40 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS00815 6901e79ce5efdb9c2ab967be33c7158c 450 Pfam PF13481 AAA domain 62 216 7.8E-17 T 26-04-2016 RGE_RS21975 b9aef01528ec1665d0d5fc6094e71e93 148 Pfam PF12680 SnoaL-like domain 14 118 1.8E-17 T 26-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RGE_RS21975 b9aef01528ec1665d0d5fc6094e71e93 148 SUPERFAMILY SSF54427 12 141 1.31E-24 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS21975 b9aef01528ec1665d0d5fc6094e71e93 148 Gene3D G3DSA:3.10.450.50 8 125 3.9E-18 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS04570 d421ea0422cfd31218095733ffac98d0 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.5E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04570 d421ea0422cfd31218095733ffac98d0 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.5E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04570 d421ea0422cfd31218095733ffac98d0 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.5E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04570 d421ea0422cfd31218095733ffac98d0 302 PANTHER PTHR30126:SF2 1 300 1.2E-82 T 26-04-2016 RGE_RS04570 d421ea0422cfd31218095733ffac98d0 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.3E-16 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04570 d421ea0422cfd31218095733ffac98d0 302 SUPERFAMILY SSF46785 1 86 3.95E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04570 d421ea0422cfd31218095733ffac98d0 302 PANTHER PTHR30126 1 300 1.2E-82 T 26-04-2016 RGE_RS04570 d421ea0422cfd31218095733ffac98d0 302 Gene3D G3DSA:1.10.10.10 1 82 2.7E-27 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04570 d421ea0422cfd31218095733ffac98d0 302 Gene3D G3DSA:3.40.190.10 83 200 6.4E-10 T 26-04-2016 RGE_RS04570 d421ea0422cfd31218095733ffac98d0 302 SUPERFAMILY SSF53850 95 301 2.53E-23 T 26-04-2016 RGE_RS04570 d421ea0422cfd31218095733ffac98d0 302 Gene3D G3DSA:3.40.190.10 201 265 2.3E-4 T 26-04-2016 RGE_RS04570 d421ea0422cfd31218095733ffac98d0 302 Pfam PF03466 LysR substrate binding domain 94 301 5.3E-24 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS02745 d49a6a4534962b8bcd1f3d606fc03470 184 PANTHER PTHR23339 50 181 1.9E-26 T 26-04-2016 RGE_RS02745 d49a6a4534962b8bcd1f3d606fc03470 184 PANTHER PTHR23339:SF64 50 181 1.9E-26 T 26-04-2016 RGE_RS02745 d49a6a4534962b8bcd1f3d606fc03470 184 SMART SM00404 87 183 5.2E-4 T 26-04-2016 IPR003595 Protein-tyrosine phosphatase, catalytic RGE_RS02745 d49a6a4534962b8bcd1f3d606fc03470 184 Pfam PF05706 Cyclin-dependent kinase inhibitor 3 (CDKN3) 46 157 1.1E-9 T 26-04-2016 IPR022778 CDKN3 domain GO:0004721|GO:0004725 KEGG: 04660+3.1.3.16 RGE_RS02745 d49a6a4534962b8bcd1f3d606fc03470 184 Gene3D G3DSA:3.90.190.10 20 180 7.2E-41 T 26-04-2016 IPR029021 Protein-tyrosine phosphatase-like RGE_RS02745 d49a6a4534962b8bcd1f3d606fc03470 184 SUPERFAMILY SSF52799 38 180 4.63E-35 T 26-04-2016 IPR029021 Protein-tyrosine phosphatase-like RGE_RS11675 20ac12c900c2041c4a5742ed93bd50de 128 Gene3D G3DSA:1.10.150.20 46 123 5.5E-16 T 26-04-2016 RGE_RS11675 20ac12c900c2041c4a5742ed93bd50de 128 Pfam PF11731 Pathogenicity locus 41 123 3.0E-33 T 26-04-2016 IPR021725 Pathogenicity locus RGE_RS10335 16200b5469b8084093c475afa1e5382d 221 Gene3D G3DSA:1.10.760.10 137 217 2.0E-19 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10335 16200b5469b8084093c475afa1e5382d 221 PIRSF PIRSF000005 2 219 3.8E-35 T 26-04-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 RGE_RS10335 16200b5469b8084093c475afa1e5382d 221 PANTHER PTHR33751:SF3 42 217 4.5E-27 T 26-04-2016 RGE_RS10335 16200b5469b8084093c475afa1e5382d 221 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 139 214 6.2E-8 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10335 16200b5469b8084093c475afa1e5382d 221 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 44 121 2.2E-5 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10335 16200b5469b8084093c475afa1e5382d 221 SUPERFAMILY SSF46626 137 217 3.93E-16 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10335 16200b5469b8084093c475afa1e5382d 221 SUPERFAMILY SSF46626 6 130 2.94E-17 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10335 16200b5469b8084093c475afa1e5382d 221 Gene3D G3DSA:1.10.760.10 44 125 3.5E-19 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10335 16200b5469b8084093c475afa1e5382d 221 PANTHER PTHR33751 42 217 4.5E-27 T 26-04-2016 RGE_RS00135 55482892da20f607c54a9835ea396cd8 281 SUPERFAMILY SSF53474 35 160 1.05E-14 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00135 55482892da20f607c54a9835ea396cd8 281 Pfam PF12697 Alpha/beta hydrolase family 58 262 4.2E-6 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS00135 55482892da20f607c54a9835ea396cd8 281 Gene3D G3DSA:3.40.50.1820 43 190 4.8E-10 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 Gene3D G3DSA:3.30.310.50 404 546 1.7E-59 T 26-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 208 227 4.6E-22 T 26-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 273 288 4.6E-22 T 26-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 109 123 4.6E-22 T 26-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 244 257 4.6E-22 T 26-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 469 519 5.3E-6 T 26-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 SUPERFAMILY SSF53738 4 215 9.81E-47 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 Gene3D G3DSA:3.40.120.10 286 403 2.9E-44 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 PANTHER PTHR22573:SF2 1 543 5.7E-257 T 26-04-2016 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 297 410 4.1E-32 T 26-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 PANTHER PTHR22573 1 543 5.7E-257 T 26-04-2016 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 SUPERFAMILY SSF55957 412 546 6.54E-45 T 26-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 Gene3D G3DSA:3.40.120.10 198 285 2.6E-35 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 187 289 1.3E-11 T 26-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 SUPERFAMILY SSF53738 281 417 4.71E-37 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 110 119 - T 26-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 14 156 1.9E-33 T 26-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 Gene3D G3DSA:3.40.120.10 4 197 5.0E-59 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS10905 fba7523ca7cd140a353fe52cac1463df 546 SUPERFAMILY SSF53738 186 294 7.85E-29 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS04280 2316e4536f0a3e1a37183f329bd519a4 293 Gene3D G3DSA:3.30.70.890 162 290 2.7E-26 T 26-04-2016 IPR013750 GHMP kinase, C-terminal domain RGE_RS04280 2316e4536f0a3e1a37183f329bd519a4 293 Pfam PF00288 GHMP kinases N terminal domain 88 145 5.7E-10 T 26-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 RGE_RS04280 2316e4536f0a3e1a37183f329bd519a4 293 PIRSF PIRSF010376 5 283 1.3E-78 T 26-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS04280 2316e4536f0a3e1a37183f329bd519a4 293 Gene3D G3DSA:3.30.230.10 9 160 8.7E-52 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS04280 2316e4536f0a3e1a37183f329bd519a4 293 SUPERFAMILY SSF55060 162 288 1.97E-18 T 26-04-2016 IPR013750 GHMP kinase, C-terminal domain RGE_RS04280 2316e4536f0a3e1a37183f329bd519a4 293 PANTHER PTHR20861 7 252 1.1E-76 T 26-04-2016 RGE_RS04280 2316e4536f0a3e1a37183f329bd519a4 293 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 7 281 29.514 T 26-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS04280 2316e4536f0a3e1a37183f329bd519a4 293 SUPERFAMILY SSF54211 9 160 3.72E-42 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS04280 2316e4536f0a3e1a37183f329bd519a4 293 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 9 255 1.1E-61 T 26-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS04280 2316e4536f0a3e1a37183f329bd519a4 293 PANTHER PTHR20861:SF2 7 252 1.1E-76 T 26-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 SMART SM00387 392 500 4.3E-22 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 SMART SM00388 282 347 7.5E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 Pfam PF08521 Two-component sensor kinase N-terminal 122 203 2.7E-5 T 26-04-2016 IPR013727 Two-component sensor kinase, N-terminal RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 Gene3D G3DSA:1.10.287.130 275 343 1.6E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 PANTHER PTHR24423:SF474 223 499 4.5E-72 T 26-04-2016 RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 PANTHER PTHR24423:SF474 1 10 4.5E-72 T 26-04-2016 RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 443 5.6E-6 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 461 479 5.6E-6 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 SUPERFAMILY SSF55874 336 499 4.71E-32 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 SUPERFAMILY SSF47384 265 347 6.28E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 394 498 1.2E-15 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 Pfam PF00512 His Kinase A (phospho-acceptor) domain 284 347 4.1E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 PANTHER PTHR24423 223 499 4.5E-72 T 26-04-2016 RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 PANTHER PTHR24423 1 10 4.5E-72 T 26-04-2016 RGE_RS04555 4a6e158f6a39878bd7587a5c81e83e38 500 Gene3D G3DSA:3.30.565.10 354 499 8.4E-30 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09875 fa84476f9933daec549acff6420adc61 426 PANTHER PTHR10632 6 379 2.4E-117 T 26-04-2016 RGE_RS09875 fa84476f9933daec549acff6420adc61 426 PANTHER PTHR10632:SF10 6 379 2.4E-117 T 26-04-2016 RGE_RS09875 fa84476f9933daec549acff6420adc61 426 Gene3D G3DSA:3.50.50.60 148 281 1.3E-58 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09875 fa84476f9933daec549acff6420adc61 426 Gene3D G3DSA:3.50.50.60 33 146 1.9E-41 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09875 fa84476f9933daec549acff6420adc61 426 Gene3D G3DSA:3.50.50.60 282 351 1.9E-41 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09875 fa84476f9933daec549acff6420adc61 426 SUPERFAMILY SSF51905 145 281 3.37E-40 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09875 fa84476f9933daec549acff6420adc61 426 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 34 149 9.4E-9 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09875 fa84476f9933daec549acff6420adc61 426 SUPERFAMILY SSF55424 355 425 2.03E-21 T 26-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RGE_RS09875 fa84476f9933daec549acff6420adc61 426 SUPERFAMILY SSF51905 33 180 2.68E-25 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09875 fa84476f9933daec549acff6420adc61 426 Gene3D G3DSA:3.90.760.10 355 425 5.1E-28 T 26-04-2016 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 RGE_RS09875 fa84476f9933daec549acff6420adc61 426 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 35 54 8.5E-5 T 26-04-2016 RGE_RS09875 fa84476f9933daec549acff6420adc61 426 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 300 322 8.5E-5 T 26-04-2016 RGE_RS09875 fa84476f9933daec549acff6420adc61 426 Pfam PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding 355 424 9.5E-28 T 26-04-2016 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 RGE_RS10830 8544b10e681cc184f87afe704a64f1c2 204 PANTHER PTHR12725:SF67 6 198 9.0E-27 T 26-04-2016 RGE_RS10830 8544b10e681cc184f87afe704a64f1c2 204 Gene3D G3DSA:1.10.150.240 21 86 3.3E-18 T 26-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RGE_RS10830 8544b10e681cc184f87afe704a64f1c2 204 Gene3D G3DSA:3.40.50.1000 94 202 4.1E-25 T 26-04-2016 IPR023214 HAD-like domain RGE_RS10830 8544b10e681cc184f87afe704a64f1c2 204 SUPERFAMILY SSF56784 6 195 4.13E-35 T 26-04-2016 IPR023214 HAD-like domain RGE_RS10830 8544b10e681cc184f87afe704a64f1c2 204 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 136 188 4.1E-11 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS10830 8544b10e681cc184f87afe704a64f1c2 204 PANTHER PTHR12725 6 198 9.0E-27 T 26-04-2016 RGE_RS10830 8544b10e681cc184f87afe704a64f1c2 204 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 8.1E-7 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS10830 8544b10e681cc184f87afe704a64f1c2 204 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 177 190 8.1E-7 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS10830 8544b10e681cc184f87afe704a64f1c2 204 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 132 148 8.1E-7 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS10830 8544b10e681cc184f87afe704a64f1c2 204 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 150 170 8.1E-7 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS05610 4fdcab880be8720aabd528099dfb7576 208 SUPERFAMILY SSF81342 5 206 1.88E-46 T 26-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RGE_RS05610 4fdcab880be8720aabd528099dfb7576 208 Pfam PF01292 Prokaryotic cytochrome b561 10 185 3.8E-20 T 26-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RGE_RS05610 4fdcab880be8720aabd528099dfb7576 208 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 8 203 6.5E-53 T 26-04-2016 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 RGE_RS05610 4fdcab880be8720aabd528099dfb7576 208 Gene3D G3DSA:1.20.950.20 5 206 3.3E-60 T 26-04-2016 RGE_RS05610 4fdcab880be8720aabd528099dfb7576 208 PANTHER PTHR30074 2 201 8.8E-52 T 26-04-2016 RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 SUPERFAMILY SSF47757 5 75 1.83E-18 T 26-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 Gene3D G3DSA:3.40.50.150 75 267 1.8E-65 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 PANTHER PTHR24422 6 262 6.9E-92 T 26-04-2016 RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 PIRSF PIRSF000410 1 268 2.4E-98 T 26-04-2016 IPR026024 Chemotaxis protein methyltransferase CheR RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 Pfam PF01739 CheR methyltransferase, SAM binding domain 76 261 1.3E-55 T 26-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 SUPERFAMILY SSF53335 76 266 1.75E-54 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 SMART SM00138 8 268 2.0E-99 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 Gene3D G3DSA:1.10.155.10 3 74 3.7E-24 T 26-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 PANTHER PTHR24422:SF13 6 262 6.9E-92 T 26-04-2016 RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 Pfam PF03705 CheR methyltransferase, all-alpha domain 10 60 4.2E-17 T 26-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 PRINTS PR00996 Glutamate methyltransferase family signature 105 125 7.0E-44 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 PRINTS PR00996 Glutamate methyltransferase family signature 208 222 7.0E-44 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 PRINTS PR00996 Glutamate methyltransferase family signature 30 43 7.0E-44 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 PRINTS PR00996 Glutamate methyltransferase family signature 137 153 7.0E-44 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 PRINTS PR00996 Glutamate methyltransferase family signature 69 81 7.0E-44 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS18270 e99831cf7e1a426d4e9f6aee7f7607af 268 PRINTS PR00996 Glutamate methyltransferase family signature 227 250 7.0E-44 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS06215 210a5b2208a1c152d1c1ba25e0844c0e 579 SUPERFAMILY SSF52540 331 565 5.66E-58 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06215 210a5b2208a1c152d1c1ba25e0844c0e 579 Pfam PF00005 ABC transporter 351 499 1.2E-27 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS06215 210a5b2208a1c152d1c1ba25e0844c0e 579 Gene3D G3DSA:3.40.50.300 334 568 1.6E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06215 210a5b2208a1c152d1c1ba25e0844c0e 579 PANTHER PTHR24221:SF161 3 578 1.1E-84 T 26-04-2016 RGE_RS06215 210a5b2208a1c152d1c1ba25e0844c0e 579 Gene3D G3DSA:1.20.1560.10 3 307 8.4E-31 T 26-04-2016 RGE_RS06215 210a5b2208a1c152d1c1ba25e0844c0e 579 PANTHER PTHR24221 3 578 1.1E-84 T 26-04-2016 RGE_RS06215 210a5b2208a1c152d1c1ba25e0844c0e 579 ProSitePatterns PS00211 ABC transporters family signature. 469 483 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS06215 210a5b2208a1c152d1c1ba25e0844c0e 579 Pfam PF00664 ABC transporter transmembrane region 19 288 1.1E-10 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS06215 210a5b2208a1c152d1c1ba25e0844c0e 579 SUPERFAMILY SSF90123 5 301 5.23E-30 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS06215 210a5b2208a1c152d1c1ba25e0844c0e 579 SMART SM00382 360 545 2.2E-18 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 Gene3D G3DSA:1.10.287.130 644 726 3.9E-4 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 Gene3D G3DSA:3.30.565.10 735 886 5.3E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 777 885 5.1E-20 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 Pfam PF00512 His Kinase A (phospho-acceptor) domain 648 727 3.8E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 834 844 1.6E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 847 865 1.6E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 816 830 1.6E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 872 885 1.6E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 SMART SM00387 774 888 1.2E-27 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 SUPERFAMILY SSF55874 723 889 1.57E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 PANTHER PTHR24423:SF445 632 676 8.2E-53 T 26-04-2016 RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 PANTHER PTHR24423:SF445 698 890 8.2E-53 T 26-04-2016 RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 PANTHER PTHR24423 632 676 8.2E-53 T 26-04-2016 RGE_RS10005 7022b453bef02ca4f5eabcd26a54a1b5 909 PANTHER PTHR24423 698 890 8.2E-53 T 26-04-2016 RGE_RS21610 c70c12565614569ff07265063ab0b6d2 153 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 5 28 4.4E-9 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS21610 c70c12565614569ff07265063ab0b6d2 153 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 29 1.7E-7 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS21610 c70c12565614569ff07265063ab0b6d2 153 SUPERFAMILY SSF54523 10 100 4.79E-13 T 26-04-2016 RGE_RS21610 c70c12565614569ff07265063ab0b6d2 153 Pfam PF12019 Type II transport protein GspH 46 128 1.7E-5 T 26-04-2016 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 RGE_RS21610 c70c12565614569ff07265063ab0b6d2 153 Gene3D G3DSA:3.30.700.10 10 84 5.8E-5 T 26-04-2016 RGE_RS21610 c70c12565614569ff07265063ab0b6d2 153 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS19730 398a8692c11eafa5f1a132715ca8681f 307 PIRSF PIRSF006414 5 303 2.1E-114 T 26-04-2016 IPR014053 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr GO:0006730|GO:0030270 RGE_RS19730 398a8692c11eafa5f1a132715ca8681f 307 Gene3D G3DSA:3.30.70.520 158 302 3.3E-64 T 26-04-2016 IPR023447 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, ferredoxin-like domain RGE_RS19730 398a8692c11eafa5f1a132715ca8681f 307 TIGRFAM TIGR03119 one_C_fhcD: formylmethanofuran--tetrahydromethanopterin N-formyltransferase 12 301 6.6E-130 T 26-04-2016 IPR014053 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr GO:0006730|GO:0030270 RGE_RS19730 398a8692c11eafa5f1a132715ca8681f 307 Hamap MF_00579 Formylmethanofuran--tetrahydromethanopterin formyltransferase [ftr]. 5 302 46.735 T 26-04-2016 IPR014053 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr GO:0006730|GO:0030270 RGE_RS19730 398a8692c11eafa5f1a132715ca8681f 307 Gene3D G3DSA:3.30.70.520 21 157 3.1E-70 T 26-04-2016 IPR023447 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, ferredoxin-like domain RGE_RS19730 398a8692c11eafa5f1a132715ca8681f 307 SUPERFAMILY SSF55112 149 302 8.11E-60 T 26-04-2016 IPR023447 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, ferredoxin-like domain RGE_RS19730 398a8692c11eafa5f1a132715ca8681f 307 SUPERFAMILY SSF55112 7 148 1.1E-62 T 26-04-2016 IPR023447 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, ferredoxin-like domain RGE_RS19730 398a8692c11eafa5f1a132715ca8681f 307 Pfam PF02741 FTR, proximal lobe 150 301 6.3E-63 T 26-04-2016 IPR002770 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, C-terminal GO:0006730|GO:0016740 RGE_RS19730 398a8692c11eafa5f1a132715ca8681f 307 Pfam PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase 7 147 6.8E-64 T 26-04-2016 IPR022667 Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, N-terminal GO:0006730|GO:0016740 RGE_RS11915 26c80f5e7828418041ba02ecb56ed387 220 PANTHER PTHR21327:SF15 19 218 1.2E-96 T 26-04-2016 RGE_RS11915 26c80f5e7828418041ba02ecb56ed387 220 SUPERFAMILY SSF55821 16 215 6.87E-76 T 26-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RGE_RS11915 26c80f5e7828418041ba02ecb56ed387 220 Gene3D G3DSA:3.90.870.10 19 216 2.6E-83 T 26-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RGE_RS11915 26c80f5e7828418041ba02ecb56ed387 220 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 19 214 2.8E-66 T 26-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS11915 26c80f5e7828418041ba02ecb56ed387 220 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 23 212 1.6E-75 T 26-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS11915 26c80f5e7828418041ba02ecb56ed387 220 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 16 218 39.482 T 26-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS11915 26c80f5e7828418041ba02ecb56ed387 220 PANTHER PTHR21327 19 218 1.2E-96 T 26-04-2016 RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 Gene3D G3DSA:3.10.580.10 356 465 2.1E-18 T 26-04-2016 RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 Gene3D G3DSA:3.40.50.1100 18 54 4.1E-59 T 26-04-2016 RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 Gene3D G3DSA:3.40.50.1100 165 331 4.1E-59 T 26-04-2016 RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 Pfam PF00571 CBS domain 356 400 3.3E-7 T 26-04-2016 IPR000644 CBS domain RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 Pfam PF00571 CBS domain 412 463 3.3E-5 T 26-04-2016 IPR000644 CBS domain RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 45 63 - T 26-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 PANTHER PTHR10314:SF35 12 374 1.5E-130 T 26-04-2016 RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 SUPERFAMILY SSF53686 10 331 6.29E-91 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 22 314 1.5E-64 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 SMART SM00116 355 402 2.6E-6 T 26-04-2016 IPR000644 CBS domain RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 SUPERFAMILY SSF54631 355 465 1.89E-18 T 26-04-2016 RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 Gene3D G3DSA:3.40.50.1100 55 159 6.8E-36 T 26-04-2016 RGE_RS09790 cf89f14a6df02e64dc0db6f944f6f7ed 474 PANTHER PTHR10314 12 374 1.5E-130 T 26-04-2016 RGE_RS06395 8688494a84c840076db6d0981b5b59de 210 PANTHER PTHR11260:SF325 1 201 9.1E-65 T 26-04-2016 RGE_RS06395 8688494a84c840076db6d0981b5b59de 210 Gene3D G3DSA:1.20.1050.10 86 200 3.1E-4 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS06395 8688494a84c840076db6d0981b5b59de 210 PANTHER PTHR11260 1 201 9.1E-65 T 26-04-2016 RGE_RS06395 8688494a84c840076db6d0981b5b59de 210 Gene3D G3DSA:3.40.30.10 1 85 3.7E-19 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS06395 8688494a84c840076db6d0981b5b59de 210 SUPERFAMILY SSF47616 76 200 1.89E-6 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS06395 8688494a84c840076db6d0981b5b59de 210 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 75 1.8E-20 T 26-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RGE_RS06395 8688494a84c840076db6d0981b5b59de 210 SUPERFAMILY SSF52833 1 87 3.01E-18 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS22890 10b4917b84cbf5fbd4ee83d4031fe338 274 Pfam PF08668 HDOD domain 14 200 4.0E-40 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS22890 10b4917b84cbf5fbd4ee83d4031fe338 274 Gene3D G3DSA:1.10.3150.10 12 267 1.4E-46 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS22890 10b4917b84cbf5fbd4ee83d4031fe338 274 PANTHER PTHR33525:SF3 12 200 1.0E-28 T 26-04-2016 RGE_RS22890 10b4917b84cbf5fbd4ee83d4031fe338 274 PANTHER PTHR33525 12 200 1.0E-28 T 26-04-2016 RGE_RS22890 10b4917b84cbf5fbd4ee83d4031fe338 274 SUPERFAMILY SSF109604 12 267 6.43E-42 T 26-04-2016 RGE_RS21095 e41c2096b24ce76eba7e85080b7e4bf4 712 PIRSF PIRSF011409 4 712 2.1E-263 T 26-04-2016 IPR016582 D-(-)-3-hydroxybutyrate oligomer hydrolase, putative GO:0005615|GO:0019605|GO:0047989 KEGG: 00650+3.1.1.22|UniPathway: UPA00863 RGE_RS21095 e41c2096b24ce76eba7e85080b7e4bf4 712 SUPERFAMILY SSF53474 575 650 2.13E-7 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS21095 e41c2096b24ce76eba7e85080b7e4bf4 712 SUPERFAMILY SSF53474 301 331 2.13E-7 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS21095 e41c2096b24ce76eba7e85080b7e4bf4 712 Pfam PF10605 3HB-oligomer hydrolase (3HBOH) 16 711 0.0 T 26-04-2016 IPR016582 D-(-)-3-hydroxybutyrate oligomer hydrolase, putative GO:0005615|GO:0019605|GO:0047989 KEGG: 00650+3.1.1.22|UniPathway: UPA00863 RGE_RS21095 e41c2096b24ce76eba7e85080b7e4bf4 712 Gene3D G3DSA:3.40.50.1820 378 379 6.4E-8 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS21095 e41c2096b24ce76eba7e85080b7e4bf4 712 Gene3D G3DSA:3.40.50.1820 287 332 6.4E-8 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS21095 e41c2096b24ce76eba7e85080b7e4bf4 712 Gene3D G3DSA:3.40.50.1820 568 634 6.4E-8 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS13235 cbd971f3b6f82dca47ab3fc02430feee 274 Pfam PF03618 Kinase/pyrophosphorylase 6 264 2.2E-79 T 26-04-2016 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 RGE_RS13235 cbd971f3b6f82dca47ab3fc02430feee 274 PANTHER PTHR31756:SF3 1 271 5.8E-99 T 26-04-2016 RGE_RS13235 cbd971f3b6f82dca47ab3fc02430feee 274 PANTHER PTHR31756 1 271 5.8E-99 T 26-04-2016 RGE_RS13235 cbd971f3b6f82dca47ab3fc02430feee 274 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 3 273 73.197 T 26-04-2016 IPR026530 Phosphoenolpyruvate synthase regulatory protein RGE_RS08150 7d1391d1c27a07a36b85fe05a5dec617 581 Pfam PF13519 von Willebrand factor type A domain 400 503 1.2E-13 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS08150 7d1391d1c27a07a36b85fe05a5dec617 581 PANTHER PTHR10338 394 512 1.9E-36 T 26-04-2016 RGE_RS08150 7d1391d1c27a07a36b85fe05a5dec617 581 PANTHER PTHR10338 49 343 1.9E-36 T 26-04-2016 RGE_RS08150 7d1391d1c27a07a36b85fe05a5dec617 581 Gene3D G3DSA:3.40.50.300 46 158 1.6E-11 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08150 7d1391d1c27a07a36b85fe05a5dec617 581 PANTHER PTHR10338:SF126 394 512 1.9E-36 T 26-04-2016 RGE_RS08150 7d1391d1c27a07a36b85fe05a5dec617 581 PANTHER PTHR10338:SF126 49 343 1.9E-36 T 26-04-2016 RGE_RS08150 7d1391d1c27a07a36b85fe05a5dec617 581 SUPERFAMILY SSF53300 397 564 4.08E-20 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS08150 7d1391d1c27a07a36b85fe05a5dec617 581 SUPERFAMILY SSF52540 40 253 4.68E-21 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08150 7d1391d1c27a07a36b85fe05a5dec617 581 Gene3D G3DSA:3.40.50.410 399 555 3.0E-12 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS08150 7d1391d1c27a07a36b85fe05a5dec617 581 Gene3D G3DSA:1.10.8.80 184 255 8.4E-11 T 26-04-2016 RGE_RS08150 7d1391d1c27a07a36b85fe05a5dec617 581 SMART SM00327 397 575 1.1E-17 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS21580 4c517937b2a40f82dbe0f20cce52f868 621 Gene3D G3DSA:2.60.120.260 49 112 1.5E-5 T 26-04-2016 IPR008979 Galactose-binding domain-like RGE_RS21580 4c517937b2a40f82dbe0f20cce52f868 621 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 526 614 5.1E-9 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS21580 4c517937b2a40f82dbe0f20cce52f868 621 Gene3D G3DSA:3.30.565.10 480 615 3.4E-12 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS21580 4c517937b2a40f82dbe0f20cce52f868 621 PANTHER PTHR24421 425 615 4.3E-22 T 26-04-2016 RGE_RS21580 4c517937b2a40f82dbe0f20cce52f868 621 PANTHER PTHR24421 185 292 4.3E-22 T 26-04-2016 RGE_RS21580 4c517937b2a40f82dbe0f20cce52f868 621 PANTHER PTHR24421:SF10 425 615 4.3E-22 T 26-04-2016 RGE_RS21580 4c517937b2a40f82dbe0f20cce52f868 621 PANTHER PTHR24421:SF10 185 292 4.3E-22 T 26-04-2016 RGE_RS21580 4c517937b2a40f82dbe0f20cce52f868 621 SUPERFAMILY SSF55874 481 613 1.24E-18 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS21580 4c517937b2a40f82dbe0f20cce52f868 621 SMART SM00387 520 615 5.2E-5 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS21580 4c517937b2a40f82dbe0f20cce52f868 621 SUPERFAMILY SSF49785 36 150 1.02E-8 T 26-04-2016 IPR008979 Galactose-binding domain-like RGE_RS05300 667808b469620b651822c6b4fbcce83f 823 PANTHER PTHR12631 474 723 1.2E-25 T 26-04-2016 RGE_RS05300 667808b469620b651822c6b4fbcce83f 823 Pfam PF02018 Carbohydrate binding domain 313 393 2.9E-6 T 26-04-2016 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 RGE_RS05300 667808b469620b651822c6b4fbcce83f 823 SUPERFAMILY SSF49785 287 418 2.89E-9 T 26-04-2016 IPR008979 Galactose-binding domain-like RGE_RS05300 667808b469620b651822c6b4fbcce83f 823 SUPERFAMILY SSF51445 468 721 1.75E-39 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS05300 667808b469620b651822c6b4fbcce83f 823 Gene3D G3DSA:2.60.120.260 103 254 1.3E-8 T 26-04-2016 IPR008979 Galactose-binding domain-like RGE_RS05300 667808b469620b651822c6b4fbcce83f 823 Gene3D G3DSA:2.60.120.260 299 429 1.2E-16 T 26-04-2016 IPR008979 Galactose-binding domain-like RGE_RS05300 667808b469620b651822c6b4fbcce83f 823 Pfam PF11790 Glycosyl hydrolase catalytic core 565 701 1.3E-9 T 26-04-2016 IPR024655 Uncharacterised protein family, glycosyl hydrolase catalytic domain RGE_RS05300 667808b469620b651822c6b4fbcce83f 823 Gene3D G3DSA:3.20.20.80 465 678 1.2E-40 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS05300 667808b469620b651822c6b4fbcce83f 823 PANTHER PTHR12631:SF4 474 723 1.2E-25 T 26-04-2016 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 SUPERFAMILY SSF52172 510 627 2.13E-32 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 SUPERFAMILY SSF55874 322 487 1.3E-43 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 Gene3D G3DSA:3.30.450.20 130 243 4.6E-7 T 26-04-2016 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 SUPERFAMILY SSF47384 250 332 2.35E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 Pfam PF00512 His Kinase A (phospho-acceptor) domain 264 332 3.0E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 SUPERFAMILY SSF55785 138 248 2.66E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 Gene3D G3DSA:3.30.565.10 334 489 1.5E-44 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 PANTHER PTHR24423 18 626 4.8E-115 T 26-04-2016 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 SMART SM00448 509 622 3.2E-29 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 SMART SM00387 378 489 1.2E-32 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 SMART SM00388 264 332 2.8E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 Gene3D G3DSA:1.10.287.130 258 327 1.0E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 379 487 3.7E-24 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 Pfam PF00072 Response regulator receiver domain 511 622 1.3E-20 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 486 5.6E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 443 5.6E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 467 5.6E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 429 5.6E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17685 b03c05f9aac2a833e1e71e39acee4223 630 Gene3D G3DSA:3.40.50.2300 510 626 1.9E-28 T 26-04-2016 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 PANTHER PTHR32071:SF5 346 658 2.9E-130 T 26-04-2016 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 429 444 - T 26-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 Pfam PF02954 Bacterial regulatory protein, Fis family 619 654 2.9E-11 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 621 638 9.6E-7 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 638 658 9.6E-7 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 Gene3D G3DSA:1.10.10.60 614 654 2.3E-12 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 PANTHER PTHR32071 346 658 2.9E-130 T 26-04-2016 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 Gene3D G3DSA:1.10.8.60 523 581 1.4E-14 T 26-04-2016 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 SUPERFAMILY SSF52540 350 580 8.19E-63 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 Pfam PF01590 GAF domain 91 204 2.0E-5 T 26-04-2016 IPR003018 GAF domain GO:0005515 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 Pfam PF00158 Sigma-54 interaction domain 347 509 6.2E-62 T 26-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 366 379 - T 26-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 Gene3D G3DSA:3.40.50.300 351 515 3.7E-49 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 Gene3D G3DSA:3.30.450.40 158 205 3.6E-4 T 26-04-2016 IPR029016 GAF domain-like RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 SMART SM00382 362 506 1.9E-9 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 SUPERFAMILY SSF46689 551 657 5.38E-11 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 551 560 - T 26-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RGE_RS19680 224d8e51a68a6ea472c2fcdbcd65b089 663 SUPERFAMILY SSF55781 64 205 2.21E-9 T 26-04-2016 IPR029016 GAF domain-like RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1660 1674 2.4E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1740 1753 2.4E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1716 1734 2.4E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SMART SM00073 624 721 4.7E-10 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SMART SM00073 1272 1369 0.012 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SMART SM00073 1128 1224 0.71 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SUPERFAMILY SSF47226 624 734 1.18E-23 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Pfam PF01584 CheW-like domain 1760 1887 2.6E-17 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SUPERFAMILY SSF50341 1755 1887 5.62E-25 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SUPERFAMILY SSF52172 1920 2036 6.4E-36 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Gene3D G3DSA:1.10.287.560 1435 1488 4.4E-5 T 26-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Gene3D G3DSA:3.30.565.10 1572 1755 8.5E-29 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Gene3D G3DSA:1.20.120.160 1105 1224 3.1E-20 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1619 1755 7.0E-15 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 PANTHER PTHR22617 1268 1482 6.0E-115 T 26-04-2016 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 PANTHER PTHR22617 625 769 6.0E-115 T 26-04-2016 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 PANTHER PTHR22617 1548 1881 6.0E-115 T 26-04-2016 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SMART SM00260 1748 1888 2.1E-14 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SMART SM01231 1433 1570 2.2E-6 T 26-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SUPERFAMILY SSF47226 1123 1237 2.09E-14 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Pfam PF01627 Hpt domain 1123 1220 2.1E-9 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Pfam PF01627 Hpt domain 626 712 1.6E-14 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Pfam PF01627 Hpt domain 1274 1355 2.1E-11 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Gene3D G3DSA:1.20.120.160 1271 1405 1.4E-21 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Gene3D G3DSA:1.20.120.160 622 770 1.0E-27 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Gene3D G3DSA:3.40.50.2300 1918 2035 1.3E-36 T 26-04-2016 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Pfam PF00072 Response regulator receiver domain 1920 2031 4.5E-25 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SUPERFAMILY SSF47226 1272 1379 1.96E-19 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SMART SM00387 1615 1756 1.9E-18 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Gene3D G3DSA:2.30.30.40 1843 1887 2.6E-13 T 26-04-2016 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 Gene3D G3DSA:2.30.30.40 1756 1777 2.6E-13 T 26-04-2016 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SUPERFAMILY SSF55874 1572 1754 1.26E-31 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 PANTHER PTHR22617:SF20 1268 1482 6.0E-115 T 26-04-2016 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 PANTHER PTHR22617:SF20 625 769 6.0E-115 T 26-04-2016 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 PANTHER PTHR22617:SF20 1548 1881 6.0E-115 T 26-04-2016 RGE_RS20505 7dd7fd5c2df9d2b734896f540c87af4f 2041 SMART SM00448 1918 2031 3.2E-36 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS05175 b630ffa8d5da8ac4c27f0dd7549a949b 409 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 16 409 1.5E-127 T 26-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RGE_RS05175 b630ffa8d5da8ac4c27f0dd7549a949b 409 PANTHER PTHR23100:SF0 9 409 8.4E-174 T 26-04-2016 RGE_RS05175 b630ffa8d5da8ac4c27f0dd7549a949b 409 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 26 407 1.0E-133 T 26-04-2016 RGE_RS05175 b630ffa8d5da8ac4c27f0dd7549a949b 409 Gene3D G3DSA:3.60.70.12 11 280 2.4E-99 T 26-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RGE_RS05175 b630ffa8d5da8ac4c27f0dd7549a949b 409 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 409 163.827 T 26-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RGE_RS05175 b630ffa8d5da8ac4c27f0dd7549a949b 409 PANTHER PTHR23100 9 409 8.4E-174 T 26-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RGE_RS05175 b630ffa8d5da8ac4c27f0dd7549a949b 409 SUPERFAMILY SSF56266 16 406 2.62E-139 T 26-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RGE_RS05175 b630ffa8d5da8ac4c27f0dd7549a949b 409 Pfam PF01960 ArgJ family 22 409 4.2E-145 T 26-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 SUPERFAMILY SSF52025 338 486 5.36E-15 T 26-04-2016 RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 PRINTS PR00723 Subtilisin serine protease family (S8) signature 218 231 2.8E-19 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 PRINTS PR00723 Subtilisin serine protease family (S8) signature 153 172 2.8E-19 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 PRINTS PR00723 Subtilisin serine protease family (S8) signature 528 544 2.8E-19 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 Pfam PF06280 Fn3-like domain 608 716 1.2E-11 T 26-04-2016 IPR010435 Fn3-like domain GO:0004252|GO:0005618|GO:0016020 RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 222 232 - T 26-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 Gene3D G3DSA:3.40.50.200 485 592 7.6E-78 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 Gene3D G3DSA:3.40.50.200 96 344 7.6E-78 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 PANTHER PTHR10795 1 598 1.4E-75 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 PANTHER PTHR10795:SF419 1 598 1.4E-75 T 26-04-2016 RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 SUPERFAMILY SSF52743 133 345 4.32E-67 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 SUPERFAMILY SSF52743 486 596 4.32E-67 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 Pfam PF00082 Subtilase family 153 571 5.6E-54 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 Pfam PF02225 PA domain 382 460 1.2E-13 T 26-04-2016 IPR003137 PA domain RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 158 169 - T 26-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 529 539 - T 26-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site RGE_RS05170 6fd31ed47a4399aa7f942946fb51dc36 869 Gene3D G3DSA:3.50.30.30 359 470 6.6E-27 T 26-04-2016 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 Gene3D G3DSA:3.90.780.10 394 609 3.3E-44 T 26-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 Pfam PF02872 5'-nucleotidase, C-terminal domain 427 577 2.1E-31 T 26-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 PRINTS PR01607 Apyrase family signature 252 275 3.5E-27 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 PRINTS PR01607 Apyrase family signature 42 60 3.5E-27 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 PRINTS PR01607 Apyrase family signature 552 571 3.5E-27 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 PRINTS PR01607 Apyrase family signature 297 317 3.5E-27 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 PRINTS PR01607 Apyrase family signature 233 250 3.5E-27 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 PRINTS PR01607 Apyrase family signature 470 493 3.5E-27 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 Pfam PF00149 Calcineurin-like phosphoesterase 44 269 3.8E-8 T 26-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 ProSitePatterns PS00786 5'-nucleotidase signature 2. 126 137 - T 26-04-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 SUPERFAMILY SSF56300 370 387 1.55E-70 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 SUPERFAMILY SSF56300 41 342 1.55E-70 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 PANTHER PTHR11575 42 320 1.7E-111 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 PANTHER PTHR11575 424 608 1.7E-111 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 PANTHER PTHR11575 351 402 1.7E-111 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 SUPERFAMILY SSF55816 430 611 4.05E-41 T 26-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 Gene3D G3DSA:3.60.21.10 42 390 1.2E-78 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 PANTHER PTHR11575:SF7 42 320 1.7E-111 T 26-04-2016 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 PANTHER PTHR11575:SF7 424 608 1.7E-111 T 26-04-2016 RGE_RS02645 fcb9d6f18d850ed9f77429be3c85a270 629 PANTHER PTHR11575:SF7 351 402 1.7E-111 T 26-04-2016 RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 9.5E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 9.5E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 9.5E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 Gene3D G3DSA:3.40.50.720 9 254 1.2E-88 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 SUPERFAMILY SSF51735 10 254 1.57E-85 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 252 3.5E-71 T 26-04-2016 RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 PANTHER PTHR24322 160 191 5.6E-54 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 PANTHER PTHR24322 16 144 5.6E-54 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 12 184 7.0E-4 T 26-04-2016 RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.5E-43 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 1.5E-43 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.5E-43 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 1.5E-43 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.5E-43 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16790 9cccdb7786bb432e2a16cf4ee0e08926 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 1.5E-43 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 PANTHER PTHR32282:SF5 417 722 1.9E-219 T 26-04-2016 RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 PANTHER PTHR32282:SF5 1 309 1.9E-219 T 26-04-2016 RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 Pfam PF17092 Penicillin-binding protein OB-like domain 315 420 5.5E-17 T 26-04-2016 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00230+2.4.2.-|KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00514+2.4.2.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00219 RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 PANTHER PTHR32282 417 722 1.9E-219 T 26-04-2016 RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 PANTHER PTHR32282 1 309 1.9E-219 T 26-04-2016 RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 Gene3D G3DSA:3.40.710.10 418 733 7.0E-123 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 Gene3D G3DSA:3.40.710.10 232 312 7.0E-123 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 SUPERFAMILY SSF53955 43 251 2.05E-72 T 26-04-2016 IPR023346 Lysozyme-like domain RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 Gene3D G3DSA:1.10.3810.10 57 231 2.1E-69 T 26-04-2016 RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 Gene3D G3DSA:2.40.50.140 346 417 2.7E-18 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 Pfam PF00905 Penicillin binding protein transpeptidase domain 423 674 5.5E-35 T 26-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 SUPERFAMILY SSF56601 418 734 5.45E-115 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 SUPERFAMILY SSF56601 211 233 5.45E-115 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 SUPERFAMILY SSF56601 261 312 5.45E-115 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 66 707 1.1E-174 T 26-04-2016 RGE_RS05970 aa07941ce59938d150116de03d7d2147 778 Pfam PF00912 Transglycosylase 57 229 2.1E-61 T 26-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RGE_RS08000 996a3a925fd976bd874826ca03aee611 635 Pfam PF13624 SurA N-terminal domain 1 162 4.3E-33 T 26-04-2016 RGE_RS08000 996a3a925fd976bd874826ca03aee611 635 PANTHER PTHR10657:SF11 12 165 9.6E-72 T 26-04-2016 RGE_RS08000 996a3a925fd976bd874826ca03aee611 635 PANTHER PTHR10657:SF11 240 507 9.6E-72 T 26-04-2016 RGE_RS08000 996a3a925fd976bd874826ca03aee611 635 SUPERFAMILY SSF109998 42 166 1.26E-24 T 26-04-2016 IPR027304 Trigger factor/SurA domain RGE_RS08000 996a3a925fd976bd874826ca03aee611 635 SUPERFAMILY SSF109998 200 244 1.26E-24 T 26-04-2016 IPR027304 Trigger factor/SurA domain RGE_RS08000 996a3a925fd976bd874826ca03aee611 635 PANTHER PTHR10657 12 165 9.6E-72 T 26-04-2016 RGE_RS08000 996a3a925fd976bd874826ca03aee611 635 PANTHER PTHR10657 240 507 9.6E-72 T 26-04-2016 RGE_RS08000 996a3a925fd976bd874826ca03aee611 635 SUPERFAMILY SSF54534 262 371 1.31E-32 T 26-04-2016 RGE_RS08000 996a3a925fd976bd874826ca03aee611 635 Pfam PF13616 PPIC-type PPIASE domain 263 367 3.6E-29 T 26-04-2016 RGE_RS08000 996a3a925fd976bd874826ca03aee611 635 Gene3D G3DSA:3.10.50.40 258 390 6.4E-45 T 26-04-2016 RGE_RS19590 486849764a1a6b6c0af2f6fc687c31bb 718 TIGRFAM TIGR02068 cya_phycin_syn: cyanophycin synthetase 9 712 1.8E-254 T 26-04-2016 IPR011810 Cyanophycin synthetase GO:0005524|GO:0009059|GO:0016874 MetaCyc: PWY-7052 RGE_RS19590 486849764a1a6b6c0af2f6fc687c31bb 718 PANTHER PTHR23135 391 709 2.0E-30 T 26-04-2016 RGE_RS19590 486849764a1a6b6c0af2f6fc687c31bb 718 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 220 306 3.8E-8 T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS19590 486849764a1a6b6c0af2f6fc687c31bb 718 PANTHER PTHR23135:SF18 391 709 2.0E-30 T 26-04-2016 RGE_RS19590 486849764a1a6b6c0af2f6fc687c31bb 718 Gene3D G3DSA:3.40.1190.10 483 709 4.0E-12 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS19590 486849764a1a6b6c0af2f6fc687c31bb 718 Gene3D G3DSA:3.30.470.20 397 449 4.6E-23 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS19590 486849764a1a6b6c0af2f6fc687c31bb 718 Gene3D G3DSA:3.30.470.20 217 339 4.6E-23 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS19590 486849764a1a6b6c0af2f6fc687c31bb 718 SUPERFAMILY SSF56059 220 487 6.01E-32 T 26-04-2016 RGE_RS19590 486849764a1a6b6c0af2f6fc687c31bb 718 SUPERFAMILY SSF53623 447 708 6.87E-13 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS19725 a7124846cee45b4ef838d7390ecb78e4 565 PANTHER PTHR11647 1 63 5.7E-14 T 26-04-2016 RGE_RS19725 a7124846cee45b4ef838d7390ecb78e4 565 SUPERFAMILY SSF51556 435 458 5.31E-28 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS19725 a7124846cee45b4ef838d7390ecb78e4 565 SUPERFAMILY SSF51556 55 399 5.31E-28 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS19725 a7124846cee45b4ef838d7390ecb78e4 565 Gene3D G3DSA:2.30.40.10 376 500 1.5E-8 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS19725 a7124846cee45b4ef838d7390ecb78e4 565 PIRSF PIRSF006453 1 552 2.3E-219 T 26-04-2016 IPR012027 Formylmethanofuran dehydrogenase, subunit A RGE_RS19725 a7124846cee45b4ef838d7390ecb78e4 565 SUPERFAMILY SSF51338 431 516 2.23E-19 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS19725 a7124846cee45b4ef838d7390ecb78e4 565 Pfam PF07969 Amidohydrolase family 43 492 3.3E-54 T 26-04-2016 IPR013108 Amidohydrolase 3 RGE_RS19725 a7124846cee45b4ef838d7390ecb78e4 565 PANTHER PTHR11647:SF73 1 63 5.7E-14 T 26-04-2016 RGE_RS19725 a7124846cee45b4ef838d7390ecb78e4 565 TIGRFAM TIGR03121 one_C_dehyd_A: formylmethanofuran dehydrogenase subunit A 4 542 9.1E-205 T 26-04-2016 IPR012027 Formylmethanofuran dehydrogenase, subunit A RGE_RS19725 a7124846cee45b4ef838d7390ecb78e4 565 Gene3D G3DSA:2.30.40.10 1 125 1.3E-14 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS19725 a7124846cee45b4ef838d7390ecb78e4 565 SUPERFAMILY SSF51338 1 65 4.32E-13 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 PANTHER PTHR24423 364 862 4.2E-109 T 26-04-2016 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 751 860 1.1E-23 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 SMART SM00388 636 702 6.5E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 SUPERFAMILY SSF55785 388 497 1.37E-24 T 26-04-2016 IPR000014 PAS domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 SMART SM00091 509 585 1.3 T 26-04-2016 IPR000014 PAS domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 SMART SM00091 256 322 1.2E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 SMART SM00091 380 453 3.7E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 SUPERFAMILY SSF55874 691 863 1.22E-39 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 PRINTS PR00344 Bacterial sensor protein C-terminal signature 845 858 9.3E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 PRINTS PR00344 Bacterial sensor protein C-terminal signature 788 802 9.3E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 PRINTS PR00344 Bacterial sensor protein C-terminal signature 806 816 9.3E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 PRINTS PR00344 Bacterial sensor protein C-terminal signature 821 839 9.3E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 Pfam PF13426 PAS domain 267 371 8.1E-11 T 26-04-2016 IPR000014 PAS domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 Pfam PF13426 PAS domain 391 496 4.2E-17 T 26-04-2016 IPR000014 PAS domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 SMART SM00086 455 497 8.0E-10 T 26-04-2016 IPR001610 PAC motif RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 SMART SM00086 332 372 7.9 T 26-04-2016 IPR001610 PAC motif RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 Gene3D G3DSA:3.30.450.20 497 627 2.1E-10 T 26-04-2016 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 403 502 1.1E-16 T 26-04-2016 IPR000014 PAS domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 255 375 2.3E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 Gene3D G3DSA:3.30.450.20 249 372 2.9E-18 T 26-04-2016 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 Gene3D G3DSA:3.30.450.20 391 496 4.1E-31 T 26-04-2016 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 Pfam PF00512 His Kinase A (phospho-acceptor) domain 636 701 7.8E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 SUPERFAMILY SSF55785 243 370 7.26E-19 T 26-04-2016 IPR000014 PAS domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 Pfam PF13188 PAS domain 509 565 1.1E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 SUPERFAMILY SSF55785 494 628 1.12E-11 T 26-04-2016 IPR000014 PAS domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 Gene3D G3DSA:1.10.287.130 628 687 8.0E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 Pfam PF00672 HAMP domain 178 246 4.8E-8 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 Gene3D G3DSA:3.30.565.10 688 863 2.1E-43 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 SUPERFAMILY SSF47384 622 702 1.61E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS21990 f910c325b4533b985d1421b299bdb94c 877 SMART SM00387 747 861 1.6E-35 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09465 4726f71b6ec045fd52580ff11dd296ec 282 Gene3D G3DSA:3.20.20.60 16 277 9.9E-104 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS09465 4726f71b6ec045fd52580ff11dd296ec 282 Pfam PF02548 Ketopantoate hydroxymethyltransferase 18 276 5.2E-104 T 26-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS09465 4726f71b6ec045fd52580ff11dd296ec 282 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 17 282 39.967 T 26-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS09465 4726f71b6ec045fd52580ff11dd296ec 282 SUPERFAMILY SSF51621 17 277 9.03E-94 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS09465 4726f71b6ec045fd52580ff11dd296ec 282 PANTHER PTHR20881 16 282 3.1E-119 T 26-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS09465 4726f71b6ec045fd52580ff11dd296ec 282 PIRSF PIRSF000388 8 282 2.2E-93 T 26-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS09465 4726f71b6ec045fd52580ff11dd296ec 282 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 23 276 9.6E-86 T 26-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 Pfam PF00672 HAMP domain 194 261 1.4E-12 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 326 512 3.7E-56 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 184 4.5E-10 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 SMART SM00304 213 265 3.9E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 SMART SM00283 266 513 2.3E-91 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 7.6E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 7.6E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 7.6E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 7.6E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 PANTHER PTHR32089:SF63 160 516 2.5E-141 T 26-04-2016 RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 SUPERFAMILY SSF58104 233 514 9.29E-71 T 26-04-2016 RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 PANTHER PTHR32089 160 516 2.5E-141 T 26-04-2016 RGE_RS04935 4aaafbb9cc5e1c1b734f8ab591be0a8c 517 Gene3D G3DSA:1.10.287.950 281 485 7.9E-59 T 26-04-2016 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 Gene3D G3DSA:3.30.450.20 221 368 1.8E-15 T 26-04-2016 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 SMART SM00086 305 346 0.0026 T 26-04-2016 IPR001610 PAC motif RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 610 8.1E-26 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 SUPERFAMILY SSF55785 251 354 9.87E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 Gene3D G3DSA:3.40.50.2300 633 758 8.0E-41 T 26-04-2016 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 SMART SM00448 638 751 6.8E-32 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 PANTHER PTHR24423:SF382 380 757 4.2E-156 T 26-04-2016 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 PANTHER PTHR24423:SF382 60 69 4.2E-156 T 26-04-2016 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 PANTHER PTHR24423:SF382 305 361 4.2E-156 T 26-04-2016 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 SUPERFAMILY SSF47384 369 450 9.02E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 Pfam PF00512 His Kinase A (phospho-acceptor) domain 384 449 1.4E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 Gene3D G3DSA:1.10.287.130 376 445 5.2E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 PRINTS PR00344 Bacterial sensor protein C-terminal signature 536 550 7.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 PRINTS PR00344 Bacterial sensor protein C-terminal signature 554 564 7.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 PRINTS PR00344 Bacterial sensor protein C-terminal signature 595 608 7.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 PRINTS PR00344 Bacterial sensor protein C-terminal signature 571 589 7.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 SUPERFAMILY SSF52172 637 758 4.41E-37 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 224 353 1.5E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 Pfam PF00072 Response regulator receiver domain 640 748 2.2E-25 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 SMART SM00387 495 611 2.0E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 PANTHER PTHR24423 380 757 4.2E-156 T 26-04-2016 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 PANTHER PTHR24423 60 69 4.2E-156 T 26-04-2016 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 PANTHER PTHR24423 305 361 4.2E-156 T 26-04-2016 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 Gene3D G3DSA:3.30.565.10 450 613 5.0E-43 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 Pfam PF08447 PAS fold 255 338 2.2E-8 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 SMART SM00388 384 449 1.3E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11020 b388a31882929f0f78ec9e4ac6e2d326 765 SUPERFAMILY SSF55874 439 606 5.89E-41 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS05895 3f85cf3d192f4e84056e753ad8e6abbe 151 SUPERFAMILY SSF54975 2 112 3.34E-37 T 26-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RGE_RS05895 3f85cf3d192f4e84056e753ad8e6abbe 151 Pfam PF04940 Sensors of blue-light using FAD 4 95 6.3E-31 T 26-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RGE_RS05895 3f85cf3d192f4e84056e753ad8e6abbe 151 SMART SM01034 4 96 2.7E-45 T 26-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RGE_RS15620 b196a27fd9af213c5104e1b98a2dfd57 327 PANTHER PTHR30465 1 326 1.3E-79 T 26-04-2016 RGE_RS15620 b196a27fd9af213c5104e1b98a2dfd57 327 Gene3D G3DSA:1.10.3720.10 107 320 2.3E-10 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15620 b196a27fd9af213c5104e1b98a2dfd57 327 SUPERFAMILY SSF161098 108 308 4.97E-10 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15620 b196a27fd9af213c5104e1b98a2dfd57 327 PANTHER PTHR30465:SF24 1 326 1.3E-79 T 26-04-2016 RGE_RS15620 b196a27fd9af213c5104e1b98a2dfd57 327 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 134 325 4.5E-27 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS10815 b305f783968c77a307963292f6aaa30c 402 Gene3D G3DSA:1.20.1250.20 206 382 3.9E-12 T 26-04-2016 RGE_RS10815 b305f783968c77a307963292f6aaa30c 402 Gene3D G3DSA:1.20.1250.20 12 199 2.0E-26 T 26-04-2016 RGE_RS10815 b305f783968c77a307963292f6aaa30c 402 Pfam PF07690 Major Facilitator Superfamily 17 322 6.8E-39 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS10815 b305f783968c77a307963292f6aaa30c 402 PANTHER PTHR23501:SF4 7 389 7.4E-152 T 26-04-2016 RGE_RS10815 b305f783968c77a307963292f6aaa30c 402 SUPERFAMILY SSF103473 7 385 5.1E-56 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS10815 b305f783968c77a307963292f6aaa30c 402 PANTHER PTHR23501 7 389 7.4E-152 T 26-04-2016 RGE_RS14855 994fc8a6d84549654a683bdf377b8936 166 Pfam PF04542 Sigma-70 region 2 14 78 6.3E-10 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14855 994fc8a6d84549654a683bdf377b8936 166 SUPERFAMILY SSF88946 12 99 5.89E-12 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14855 994fc8a6d84549654a683bdf377b8936 166 SUPERFAMILY SSF88659 89 162 1.67E-12 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14855 994fc8a6d84549654a683bdf377b8936 166 Gene3D G3DSA:1.10.10.10 110 164 6.2E-12 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14855 994fc8a6d84549654a683bdf377b8936 166 PANTHER PTHR30173 11 162 1.7E-34 T 26-04-2016 RGE_RS14855 994fc8a6d84549654a683bdf377b8936 166 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 159 1.3E-18 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14855 994fc8a6d84549654a683bdf377b8936 166 PANTHER PTHR30173:SF9 11 162 1.7E-34 T 26-04-2016 RGE_RS14855 994fc8a6d84549654a683bdf377b8936 166 Gene3D G3DSA:1.10.1740.10 12 81 2.6E-9 T 26-04-2016 RGE_RS14855 994fc8a6d84549654a683bdf377b8936 166 Pfam PF08281 Sigma-70, region 4 110 162 1.7E-15 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS03525 df277b635b5d115e87d11fe10e017041 257 Pfam PF07728 AAA domain (dynein-related subfamily) 23 157 6.8E-36 T 26-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RGE_RS03525 df277b635b5d115e87d11fe10e017041 257 PANTHER PTHR22908 10 218 6.1E-39 T 26-04-2016 RGE_RS03525 df277b635b5d115e87d11fe10e017041 257 SUPERFAMILY SSF52540 18 220 9.61E-33 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03525 df277b635b5d115e87d11fe10e017041 257 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 170 253 5.2E-29 T 26-04-2016 IPR013615 CbbQ/NirQ/NorQ, C-terminal RGE_RS03525 df277b635b5d115e87d11fe10e017041 257 Gene3D G3DSA:3.40.50.300 15 170 9.4E-29 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01465 e2e238500e12982a03ff94991ae5990d 255 PANTHER PTHR30136 6 251 4.2E-48 T 26-04-2016 RGE_RS01465 e2e238500e12982a03ff94991ae5990d 255 SUPERFAMILY SSF46785 15 87 7.18E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01465 e2e238500e12982a03ff94991ae5990d 255 SMART SM00346 15 104 4.6E-14 T 26-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RGE_RS01465 e2e238500e12982a03ff94991ae5990d 255 Pfam PF09339 IclR helix-turn-helix domain 17 67 2.2E-16 T 26-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RGE_RS01465 e2e238500e12982a03ff94991ae5990d 255 SUPERFAMILY SSF55781 98 249 1.9E-36 T 26-04-2016 IPR029016 GAF domain-like RGE_RS01465 e2e238500e12982a03ff94991ae5990d 255 Gene3D G3DSA:1.10.10.10 15 76 2.3E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01465 e2e238500e12982a03ff94991ae5990d 255 Gene3D G3DSA:3.30.450.40 106 251 3.6E-39 T 26-04-2016 IPR029016 GAF domain-like RGE_RS01465 e2e238500e12982a03ff94991ae5990d 255 Pfam PF01614 Bacterial transcriptional regulator 135 246 4.9E-23 T 26-04-2016 IPR014757 Transcription regulator IclR, C-terminal RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 SMART SM00382 178 312 7.0E-9 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 Pfam PF00308 Bacterial dnaA protein 146 363 1.4E-83 T 26-04-2016 IPR013317 Chromosomal replication initiator protein DnaA RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 480 30.886 T 26-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 ProSitePatterns PS01008 DnaA protein signature. 439 458 - T 26-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 179 199 2.4E-47 T 26-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 211 225 2.4E-47 T 26-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 243 257 2.4E-47 T 26-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 277 304 2.4E-47 T 26-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 439 458 2.4E-47 T 26-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 Gene3D G3DSA:1.10.1750.10 380 480 3.7E-41 T 26-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 PANTHER PTHR30050:SF2 144 481 1.2E-189 T 26-04-2016 RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 PANTHER PTHR30050:SF2 1 107 1.2E-189 T 26-04-2016 RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 Gene3D G3DSA:1.10.8.60 312 379 8.5E-27 T 26-04-2016 RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 Pfam PF11638 DnaA N-terminal domain 5 70 8.5E-15 T 26-04-2016 IPR024633 DnaA N-terminal domain RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 SUPERFAMILY SSF52540 145 357 5.23E-39 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 Gene3D G3DSA:3.40.50.300 141 310 6.6E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 PANTHER PTHR30050 144 481 1.2E-189 T 26-04-2016 RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 PANTHER PTHR30050 1 107 1.2E-189 T 26-04-2016 RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 SMART SM00760 389 458 2.2E-42 T 26-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 SUPERFAMILY SSF48295 377 480 8.63E-37 T 26-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 479 6.6E-164 T 26-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RGE_RS00015 efae85a364392551d7bd524a3d94ec86 481 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 390 458 9.8E-32 T 26-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 SUPERFAMILY SSF55785 331 459 2.09E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 SMART SM00388 484 552 1.0E-12 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 PANTHER PTHR24423 465 706 1.9E-76 T 26-04-2016 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 PANTHER PTHR24423 74 332 1.9E-76 T 26-04-2016 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 SUPERFAMILY SSF47384 471 553 1.69E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 Pfam PF00512 His Kinase A (phospho-acceptor) domain 485 552 1.2E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 Pfam PF13426 PAS domain 99 201 3.1E-4 T 26-04-2016 IPR000014 PAS domain RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 Gene3D G3DSA:3.30.450.20 213 328 1.1E-13 T 26-04-2016 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 SUPERFAMILY SSF55785 207 332 8.38E-11 T 26-04-2016 IPR000014 PAS domain RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 86 208 5.0E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 SMART SM00091 87 154 0.61 T 26-04-2016 IPR000014 PAS domain RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 SMART SM00091 346 415 6.1 T 26-04-2016 IPR000014 PAS domain RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 664 1.2E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 PRINTS PR00344 Bacterial sensor protein C-terminal signature 670 688 1.2E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 PRINTS PR00344 Bacterial sensor protein C-terminal signature 694 707 1.2E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 PRINTS PR00344 Bacterial sensor protein C-terminal signature 636 650 1.2E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 SUPERFAMILY SSF55874 541 706 2.49E-38 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 Gene3D G3DSA:3.30.565.10 539 706 7.4E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 Gene3D G3DSA:3.30.450.20 79 197 1.2E-8 T 26-04-2016 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 Gene3D G3DSA:3.30.450.20 329 455 1.1E-8 T 26-04-2016 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 Gene3D G3DSA:1.10.287.130 477 538 1.5E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 600 708 1.0E-18 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 SUPERFAMILY SSF55785 74 197 3.32E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS22625 af94017d222e3b6f8dbe5ff65d72990d 719 SMART SM00387 599 710 6.7E-31 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 SMART SM00852 199 336 1.4E-43 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 Gene3D G3DSA:2.40.340.10 350 419 7.6E-31 T 26-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 Gene3D G3DSA:3.90.105.10 161 181 7.4E-21 T 26-04-2016 RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 Gene3D G3DSA:3.90.105.10 42 65 7.4E-21 T 26-04-2016 RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 Gene3D G3DSA:2.170.190.11 66 160 1.5E-24 T 26-04-2016 RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 Gene3D G3DSA:3.40.980.10 182 349 3.3E-56 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 PANTHER PTHR10192 27 424 2.6E-142 T 26-04-2016 RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 Pfam PF00994 Probable molybdopterin binding domain 201 334 8.4E-27 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 SUPERFAMILY SSF63867 345 423 2.88E-25 T 26-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 SUPERFAMILY SSF53218 196 340 3.27E-40 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 PANTHER PTHR10192:SF11 27 424 2.6E-142 T 26-04-2016 RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 196 331 3.5E-28 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 Pfam PF03454 MoeA C-terminal region (domain IV) 350 421 7.5E-21 T 26-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 SUPERFAMILY SSF63882 24 194 1.19E-46 T 26-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15920 448f29a50d50ba1ba74aab3bae18037f 425 Pfam PF03453 MoeA N-terminal region (domain I and II) 28 186 1.4E-33 T 26-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS02615 9e53bb003bcec31903c6b96e9128bc72 252 PIRSF PIRSF004869 14 251 2.0E-28 T 26-04-2016 IPR016431 Pyruvate-formate lyase-activating enzyme, predicted RGE_RS02615 9e53bb003bcec31903c6b96e9128bc72 252 Gene3D G3DSA:3.80.30.10 80 251 7.9E-62 T 26-04-2016 RGE_RS02615 9e53bb003bcec31903c6b96e9128bc72 252 PANTHER PTHR30352:SF9 15 251 3.2E-93 T 26-04-2016 RGE_RS02615 9e53bb003bcec31903c6b96e9128bc72 252 Pfam PF04055 Radical SAM superfamily 35 189 9.7E-28 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS02615 9e53bb003bcec31903c6b96e9128bc72 252 Pfam PF13353 4Fe-4S single cluster domain 26 139 2.3E-17 T 26-04-2016 RGE_RS02615 9e53bb003bcec31903c6b96e9128bc72 252 SUPERFAMILY SSF102114 33 224 5.23E-32 T 26-04-2016 RGE_RS02615 9e53bb003bcec31903c6b96e9128bc72 252 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 17 246 1.6E-92 T 26-04-2016 IPR012838 Pyruvate formate-lyase activating enzyme GO:0043365|GO:0055114 RGE_RS02615 9e53bb003bcec31903c6b96e9128bc72 252 ProSitePatterns PS01087 Radical activating enzymes signature. 28 49 - T 26-04-2016 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 RGE_RS02615 9e53bb003bcec31903c6b96e9128bc72 252 PANTHER PTHR30352 15 251 3.2E-93 T 26-04-2016 RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 SUPERFAMILY SSF52540 106 368 2.14E-21 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 Gene3D G3DSA:1.25.40.10 618 715 7.7E-4 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 PRINTS PR00364 Disease resistance protein signature 206 220 1.2E-6 T 26-04-2016 RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 PRINTS PR00364 Disease resistance protein signature 310 324 1.2E-6 T 26-04-2016 RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 PRINTS PR00364 Disease resistance protein signature 138 153 1.2E-6 T 26-04-2016 RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 SUPERFAMILY SSF48452 618 727 2.0E-7 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 Gene3D G3DSA:1.10.10.10 2 91 5.9E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 Pfam PF00486 Transcriptional regulatory protein, C terminal 20 89 4.2E-15 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 PANTHER PTHR26402 7 104 8.5E-14 T 26-04-2016 RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 Gene3D G3DSA:3.40.50.300 119 150 3.9E-5 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 PANTHER PTHR26402:SF606 7 104 8.5E-14 T 26-04-2016 RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 SUPERFAMILY SSF46894 3 91 1.62E-17 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 Gene3D G3DSA:3.40.50.300 151 225 3.0E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11820 5bc2015f8d899fe05239d3ef912306f3 828 SMART SM00862 19 89 8.0E-18 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS12820 ec97e7158b96b071832084fca0ef700b 220 SMART SM01007 12 186 1.3E-62 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS12820 ec97e7158b96b071832084fca0ef700b 220 SUPERFAMILY SSF53639 7 214 1.35E-62 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS12820 ec97e7158b96b071832084fca0ef700b 220 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 14 186 7.5E-49 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS12820 ec97e7158b96b071832084fca0ef700b 220 PANTHER PTHR22789:SF0 1 218 1.2E-75 T 26-04-2016 RGE_RS12820 ec97e7158b96b071832084fca0ef700b 220 PANTHER PTHR22789 1 218 1.2E-75 T 26-04-2016 RGE_RS12820 ec97e7158b96b071832084fca0ef700b 220 Gene3D G3DSA:3.40.225.10 9 216 4.9E-63 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS00605 575cae8b0d082ff29d36f0db90edebae 220 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 26-04-2016 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 RGE_RS00605 575cae8b0d082ff29d36f0db90edebae 220 Pfam PF01144 Coenzyme A transferase 8 216 5.7E-61 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS00605 575cae8b0d082ff29d36f0db90edebae 220 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 216 8.9E-59 T 26-04-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 RGE_RS00605 575cae8b0d082ff29d36f0db90edebae 220 Gene3D G3DSA:3.40.1080.10 5 216 1.5E-75 T 26-04-2016 RGE_RS00605 575cae8b0d082ff29d36f0db90edebae 220 SMART SM00882 6 217 1.4E-68 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS00605 575cae8b0d082ff29d36f0db90edebae 220 SUPERFAMILY SSF100950 2 218 3.81E-72 T 26-04-2016 RGE_RS00605 575cae8b0d082ff29d36f0db90edebae 220 PANTHER PTHR13707:SF39 1 215 3.8E-87 T 26-04-2016 RGE_RS00605 575cae8b0d082ff29d36f0db90edebae 220 PANTHER PTHR13707 1 215 3.8E-87 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS05560 c2a46eec65e3ed1eed0bbbfd14d0be6a 283 SUPERFAMILY SSF46785 5 113 5.78E-26 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05560 c2a46eec65e3ed1eed0bbbfd14d0be6a 283 Pfam PF03466 LysR substrate binding domain 89 279 4.8E-25 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS05560 c2a46eec65e3ed1eed0bbbfd14d0be6a 283 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 5.9E-19 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05560 c2a46eec65e3ed1eed0bbbfd14d0be6a 283 PANTHER PTHR30579:SF0 2 282 4.7E-55 T 26-04-2016 RGE_RS05560 c2a46eec65e3ed1eed0bbbfd14d0be6a 283 Gene3D G3DSA:3.40.190.10 88 182 2.0E-18 T 26-04-2016 RGE_RS05560 c2a46eec65e3ed1eed0bbbfd14d0be6a 283 Gene3D G3DSA:1.10.10.10 6 87 3.9E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05560 c2a46eec65e3ed1eed0bbbfd14d0be6a 283 PANTHER PTHR30579 2 282 4.7E-55 T 26-04-2016 RGE_RS05560 c2a46eec65e3ed1eed0bbbfd14d0be6a 283 Gene3D G3DSA:3.40.190.10 183 238 1.5E-4 T 26-04-2016 RGE_RS05560 c2a46eec65e3ed1eed0bbbfd14d0be6a 283 SUPERFAMILY SSF53850 90 281 2.53E-24 T 26-04-2016 RGE_RS22895 ab14d510cac74067b8304adbb98d1c70 537 Pfam PF05199 GMC oxidoreductase 391 529 5.7E-39 T 26-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 RGE_RS22895 ab14d510cac74067b8304adbb98d1c70 537 Pfam PF00732 GMC oxidoreductase 6 299 1.1E-79 T 26-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RGE_RS22895 ab14d510cac74067b8304adbb98d1c70 537 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 258 272 - T 26-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RGE_RS22895 ab14d510cac74067b8304adbb98d1c70 537 SUPERFAMILY SSF54373 294 477 3.34E-56 T 26-04-2016 RGE_RS22895 ab14d510cac74067b8304adbb98d1c70 537 PIRSF PIRSF000137 1 536 2.2E-143 T 26-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 RGE_RS22895 ab14d510cac74067b8304adbb98d1c70 537 PANTHER PTHR11552:SF51 5 533 6.0E-215 T 26-04-2016 RGE_RS22895 ab14d510cac74067b8304adbb98d1c70 537 PANTHER PTHR11552 5 533 6.0E-215 T 26-04-2016 RGE_RS22895 ab14d510cac74067b8304adbb98d1c70 537 SUPERFAMILY SSF51905 4 292 4.89E-89 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS22895 ab14d510cac74067b8304adbb98d1c70 537 SUPERFAMILY SSF51905 476 535 4.89E-89 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS22895 ab14d510cac74067b8304adbb98d1c70 537 Gene3D G3DSA:3.50.50.60 470 534 6.0E-123 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS22895 ab14d510cac74067b8304adbb98d1c70 537 Gene3D G3DSA:3.50.50.60 189 317 6.0E-123 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS22895 ab14d510cac74067b8304adbb98d1c70 537 Gene3D G3DSA:3.50.50.60 3 128 6.0E-123 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13515 dce15835fc2fa882a4b1f436c7dc613b 591 Gene3D G3DSA:2.40.110.10 160 265 1.6E-24 T 26-04-2016 RGE_RS13515 dce15835fc2fa882a4b1f436c7dc613b 591 PANTHER PTHR10909 3 469 1.1E-183 T 26-04-2016 RGE_RS13515 dce15835fc2fa882a4b1f436c7dc613b 591 Gene3D G3DSA:1.10.540.10 36 157 1.8E-14 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS13515 dce15835fc2fa882a4b1f436c7dc613b 591 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 155 6.0E-10 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS13515 dce15835fc2fa882a4b1f436c7dc613b 591 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 278 444 1.6E-25 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS13515 dce15835fc2fa882a4b1f436c7dc613b 591 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 463 586 4.0E-28 T 26-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RGE_RS13515 dce15835fc2fa882a4b1f436c7dc613b 591 SUPERFAMILY SSF47203 276 452 1.32E-42 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS13515 dce15835fc2fa882a4b1f436c7dc613b 591 SUPERFAMILY SSF56645 36 276 1.83E-54 T 26-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RGE_RS13515 dce15835fc2fa882a4b1f436c7dc613b 591 Gene3D G3DSA:1.20.140.10 266 451 9.9E-52 T 26-04-2016 RGE_RS13515 dce15835fc2fa882a4b1f436c7dc613b 591 PANTHER PTHR10909:SF296 3 469 1.1E-183 T 26-04-2016 RGE_RS13515 dce15835fc2fa882a4b1f436c7dc613b 591 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 161 265 1.9E-14 T 26-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RGE_RS13515 dce15835fc2fa882a4b1f436c7dc613b 591 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 2 32 9.8E-13 T 26-04-2016 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 Pfam PF00224 Pyruvate kinase, barrel domain 1 340 6.2E-117 T 26-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 SUPERFAMILY SSF51621 166 340 7.33E-89 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 SUPERFAMILY SSF51621 1 75 7.33E-89 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 PANTHER PTHR11817 1 474 6.8E-223 T 26-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 474 1.9E-151 T 26-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 SUPERFAMILY SSF50800 70 162 5.93E-25 T 26-04-2016 IPR011037 Pyruvate kinase-like, insert domain RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 PANTHER PTHR11817:SF17 1 474 6.8E-223 T 26-04-2016 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 PRINTS PR01050 Pyruvate kinase family signature 315 331 5.8E-57 T 26-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 PRINTS PR01050 Pyruvate kinase family signature 296 314 5.8E-57 T 26-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 PRINTS PR01050 Pyruvate kinase family signature 59 75 5.8E-57 T 26-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 PRINTS PR01050 Pyruvate kinase family signature 271 295 5.8E-57 T 26-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 PRINTS PR01050 Pyruvate kinase family signature 246 270 5.8E-57 T 26-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 PRINTS PR01050 Pyruvate kinase family signature 185 199 5.8E-57 T 26-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 PRINTS PR01050 Pyruvate kinase family signature 219 245 5.8E-57 T 26-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 Gene3D G3DSA:3.40.1380.20 329 471 1.3E-36 T 26-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 SUPERFAMILY SSF52935 350 474 7.06E-36 T 26-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 Gene3D G3DSA:3.20.20.60 167 328 2.7E-94 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 Gene3D G3DSA:3.20.20.60 2 72 2.7E-94 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 Gene3D G3DSA:2.40.33.10 73 166 6.1E-29 T 26-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS02290 9cee7ebe1888749e8d27c98ace2f96da 475 Pfam PF02887 Pyruvate kinase, alpha/beta domain 360 471 1.6E-26 T 26-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS01250 4bcc0e2cffe645f382755518480daec2 340 Gene3D G3DSA:3.40.367.20 114 312 2.0E-64 T 26-04-2016 RGE_RS01250 4bcc0e2cffe645f382755518480daec2 340 PANTHER PTHR30514 6 333 5.6E-65 T 26-04-2016 RGE_RS01250 4bcc0e2cffe645f382755518480daec2 340 SUPERFAMILY SSF53067 12 325 6.66E-56 T 26-04-2016 RGE_RS01250 4bcc0e2cffe645f382755518480daec2 340 Pfam PF02685 Glucokinase 13 327 2.9E-100 T 26-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 RGE_RS01250 4bcc0e2cffe645f382755518480daec2 340 Hamap MF_00524 Glucokinase [glk]. 9 329 35.186 T 26-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 RGE_RS01250 4bcc0e2cffe645f382755518480daec2 340 PANTHER PTHR30514:SF0 6 333 5.6E-65 T 26-04-2016 RGE_RS01250 4bcc0e2cffe645f382755518480daec2 340 ProSitePatterns PS01125 ROK family signature. 146 173 - T 26-04-2016 IPR000600 ROK family RGE_RS01250 4bcc0e2cffe645f382755518480daec2 340 TIGRFAM TIGR00749 glk: glucokinase 13 323 5.5E-83 T 26-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 RGE_RS06780 e3481c74f8e415cf65dc528ce218eadb 363 Gene3D G3DSA:3.40.50.2000 13 167 2.1E-42 T 26-04-2016 RGE_RS06780 e3481c74f8e415cf65dc528ce218eadb 363 PANTHER PTHR30160 13 361 9.7E-54 T 26-04-2016 RGE_RS06780 e3481c74f8e415cf65dc528ce218eadb 363 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 90 327 2.9E-42 T 26-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 RGE_RS06780 e3481c74f8e415cf65dc528ce218eadb 363 SUPERFAMILY SSF53756 13 352 1.78E-89 T 26-04-2016 RGE_RS06780 e3481c74f8e415cf65dc528ce218eadb 363 Gene3D G3DSA:3.40.50.2000 183 352 2.6E-48 T 26-04-2016 RGE_RS06780 e3481c74f8e415cf65dc528ce218eadb 363 PANTHER PTHR30160:SF7 13 361 9.7E-54 T 26-04-2016 RGE_RS22690 76c8da9c2b48b3fac03729a221c0df2f 292 Gene3D G3DSA:3.30.200.20 11 83 1.7E-18 T 26-04-2016 RGE_RS22690 76c8da9c2b48b3fac03729a221c0df2f 292 PANTHER PTHR24362 11 285 2.5E-85 T 26-04-2016 RGE_RS22690 76c8da9c2b48b3fac03729a221c0df2f 292 Pfam PF00069 Protein kinase domain 15 266 4.7E-47 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS22690 76c8da9c2b48b3fac03729a221c0df2f 292 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 137 149 - T 26-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RGE_RS22690 76c8da9c2b48b3fac03729a221c0df2f 292 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 21 44 - T 26-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 RGE_RS22690 76c8da9c2b48b3fac03729a221c0df2f 292 Gene3D G3DSA:1.10.510.10 84 275 4.1E-47 T 26-04-2016 RGE_RS22690 76c8da9c2b48b3fac03729a221c0df2f 292 PIRSF PIRSF000654 10 286 2.8E-25 T 26-04-2016 RGE_RS22690 76c8da9c2b48b3fac03729a221c0df2f 292 PANTHER PTHR24362:SF160 11 285 2.5E-85 T 26-04-2016 RGE_RS22690 76c8da9c2b48b3fac03729a221c0df2f 292 SUPERFAMILY SSF56112 11 276 6.52E-71 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS22690 76c8da9c2b48b3fac03729a221c0df2f 292 SMART SM00220 15 278 5.9E-53 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS22255 cf2856fd0e09b6a47388da9695eca53f 512 SMART SM00382 291 488 8.5 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS22255 cf2856fd0e09b6a47388da9695eca53f 512 SMART SM00382 37 233 7.2E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS22255 cf2856fd0e09b6a47388da9695eca53f 512 Pfam PF00005 ABC transporter 29 177 2.6E-27 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS22255 cf2856fd0e09b6a47388da9695eca53f 512 Pfam PF00005 ABC transporter 282 439 3.3E-13 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS22255 cf2856fd0e09b6a47388da9695eca53f 512 Gene3D G3DSA:3.40.50.300 11 234 1.6E-63 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22255 cf2856fd0e09b6a47388da9695eca53f 512 PANTHER PTHR24220 14 392 1.4E-151 T 26-04-2016 RGE_RS22255 cf2856fd0e09b6a47388da9695eca53f 512 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS22255 cf2856fd0e09b6a47388da9695eca53f 512 SUPERFAMILY SSF52540 13 234 4.11E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22255 cf2856fd0e09b6a47388da9695eca53f 512 PANTHER PTHR24220:SF239 14 392 1.4E-151 T 26-04-2016 RGE_RS22255 cf2856fd0e09b6a47388da9695eca53f 512 Gene3D G3DSA:3.40.50.300 278 499 4.5E-35 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22255 cf2856fd0e09b6a47388da9695eca53f 512 SUPERFAMILY SSF52540 278 498 2.83E-36 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04605 855741953f24fbc4de11d53ad9525072 346 ProSitePatterns PS00483 Dihydroorotase signature 2. 248 259 - T 26-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS04605 855741953f24fbc4de11d53ad9525072 346 Pfam PF01979 Amidohydrolase family 15 313 5.0E-22 T 26-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RGE_RS04605 855741953f24fbc4de11d53ad9525072 346 PANTHER PTHR11647:SF59 8 319 1.6E-158 T 26-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS04605 855741953f24fbc4de11d53ad9525072 346 Hamap MF_00219 Dihydroorotase [pyrC]. 6 346 45.638 T 26-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS04605 855741953f24fbc4de11d53ad9525072 346 SUPERFAMILY SSF51556 7 345 2.53E-142 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS04605 855741953f24fbc4de11d53ad9525072 346 PIRSF PIRSF001237 4 346 1.7E-134 T 26-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS04605 855741953f24fbc4de11d53ad9525072 346 PANTHER PTHR11647 8 319 1.6E-158 T 26-04-2016 RGE_RS04605 855741953f24fbc4de11d53ad9525072 346 ProSitePatterns PS00482 Dihydroorotase signature 1. 15 23 - T 26-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS04605 855741953f24fbc4de11d53ad9525072 346 Gene3D G3DSA:3.20.20.140 6 345 3.0E-132 T 26-04-2016 RGE_RS04605 855741953f24fbc4de11d53ad9525072 346 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 8 346 5.0E-137 T 26-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS01630 d2f1b8763cf2a2e24e8c3b6333637f25 91 SUPERFAMILY SSF54570 3 84 1.29E-35 T 26-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 RGE_RS01630 d2f1b8763cf2a2e24e8c3b6333637f25 91 Pfam PF00203 Ribosomal protein S19 3 83 2.8E-38 T 26-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RGE_RS01630 d2f1b8763cf2a2e24e8c3b6333637f25 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 26-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 RGE_RS01630 d2f1b8763cf2a2e24e8c3b6333637f25 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.6E-45 T 26-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 RGE_RS01630 d2f1b8763cf2a2e24e8c3b6333637f25 91 Gene3D G3DSA:3.30.860.10 1 90 5.4E-42 T 26-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 RGE_RS01630 d2f1b8763cf2a2e24e8c3b6333637f25 91 PANTHER PTHR11880 1 91 1.9E-53 T 26-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RGE_RS01630 d2f1b8763cf2a2e24e8c3b6333637f25 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.647 T 26-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RGE_RS01630 d2f1b8763cf2a2e24e8c3b6333637f25 91 PIRSF PIRSF002144 1 91 6.6E-33 T 26-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RGE_RS01630 d2f1b8763cf2a2e24e8c3b6333637f25 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.8E-24 T 26-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RGE_RS01630 d2f1b8763cf2a2e24e8c3b6333637f25 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.8E-24 T 26-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RGE_RS01630 d2f1b8763cf2a2e24e8c3b6333637f25 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.8E-24 T 26-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RGE_RS11755 666e32985238c158c186f30adee907de 694 Pfam PF12826 Helix-hairpin-helix motif 516 579 7.2E-28 T 26-04-2016 RGE_RS11755 666e32985238c158c186f30adee907de 694 SUPERFAMILY SSF52113 603 678 6.71E-20 T 26-04-2016 IPR001357 BRCT domain RGE_RS11755 666e32985238c158c186f30adee907de 694 PANTHER PTHR23389:SF9 9 539 6.9E-175 T 26-04-2016 RGE_RS11755 666e32985238c158c186f30adee907de 694 SMART SM00278 518 537 580.0 T 26-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RGE_RS11755 666e32985238c158c186f30adee907de 694 SMART SM00278 486 505 810.0 T 26-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RGE_RS11755 666e32985238c158c186f30adee907de 694 SMART SM00278 550 569 26.0 T 26-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RGE_RS11755 666e32985238c158c186f30adee907de 694 SMART SM00278 452 471 19.0 T 26-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RGE_RS11755 666e32985238c158c186f30adee907de 694 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 8 324 3.2E-109 T 26-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 RGE_RS11755 666e32985238c158c186f30adee907de 694 SUPERFAMILY SSF56091 4 322 6.78E-107 T 26-04-2016 RGE_RS11755 666e32985238c158c186f30adee907de 694 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 413 440 2.0E-9 T 26-04-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 RGE_RS11755 666e32985238c158c186f30adee907de 694 Gene3D G3DSA:1.10.150.20 510 590 3.4E-36 T 26-04-2016 RGE_RS11755 666e32985238c158c186f30adee907de 694 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 337 352 - T 26-04-2016 IPR033136 NAD-dependent DNA ligase, conserved site RGE_RS11755 666e32985238c158c186f30adee907de 694 Gene3D G3DSA:3.40.50.10190 603 681 1.4E-26 T 26-04-2016 IPR001357 BRCT domain RGE_RS11755 666e32985238c158c186f30adee907de 694 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 328 402 2.8E-33 T 26-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 RGE_RS11755 666e32985238c158c186f30adee907de 694 SMART SM00292 602 679 2.6E-15 T 26-04-2016 IPR001357 BRCT domain RGE_RS11755 666e32985238c158c186f30adee907de 694 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 603 676 9.2E-14 T 26-04-2016 IPR001357 BRCT domain RGE_RS11755 666e32985238c158c186f30adee907de 694 Pfam PF14520 Helix-hairpin-helix domain 454 508 4.6E-4 T 26-04-2016 RGE_RS11755 666e32985238c158c186f30adee907de 694 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 122 151 - T 26-04-2016 IPR018239 NAD-dependent DNA ligase, active site RGE_RS11755 666e32985238c158c186f30adee907de 694 Gene3D G3DSA:1.10.287.610 4 69 1.3E-27 T 26-04-2016 RGE_RS11755 666e32985238c158c186f30adee907de 694 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 13 671 9.5E-242 T 26-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RGE_RS11755 666e32985238c158c186f30adee907de 694 PANTHER PTHR23389 9 539 6.9E-175 T 26-04-2016 RGE_RS11755 666e32985238c158c186f30adee907de 694 Gene3D G3DSA:1.10.150.20 441 509 1.8E-24 T 26-04-2016 RGE_RS11755 666e32985238c158c186f30adee907de 694 PIRSF PIRSF001604 1 681 1.0E-229 T 26-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RGE_RS11755 666e32985238c158c186f30adee907de 694 SUPERFAMILY SSF50249 324 402 2.23E-26 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS11755 666e32985238c158c186f30adee907de 694 SUPERFAMILY SSF47781 410 590 5.19E-63 T 26-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RGE_RS11755 666e32985238c158c186f30adee907de 694 Gene3D G3DSA:2.40.50.140 325 396 7.6E-34 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS11755 666e32985238c158c186f30adee907de 694 Gene3D G3DSA:3.30.470.30 126 258 1.2E-49 T 26-04-2016 RGE_RS11755 666e32985238c158c186f30adee907de 694 Hamap MF_01588 DNA ligase [ligA]. 4 676 53.051 T 26-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RGE_RS11755 666e32985238c158c186f30adee907de 694 SMART SM00532 5 454 2.2E-224 T 26-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 RGE_RS20795 68f4bfe5e393a73e2168278a6e9a32f0 208 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 10 202 25.85 T 26-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RGE_RS20795 68f4bfe5e393a73e2168278a6e9a32f0 208 PANTHER PTHR10695 14 201 1.8E-55 T 26-04-2016 RGE_RS20795 68f4bfe5e393a73e2168278a6e9a32f0 208 Pfam PF01121 Dephospho-CoA kinase 14 187 1.4E-52 T 26-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RGE_RS20795 68f4bfe5e393a73e2168278a6e9a32f0 208 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 14 192 3.6E-43 T 26-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RGE_RS20795 68f4bfe5e393a73e2168278a6e9a32f0 208 Gene3D G3DSA:3.40.50.300 7 203 1.1E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20795 68f4bfe5e393a73e2168278a6e9a32f0 208 SUPERFAMILY SSF52540 9 201 1.75E-37 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20000 60705fea7dec25fddf5591e111c794e4 140 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 103 1.0E-30 T 26-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RGE_RS20000 60705fea7dec25fddf5591e111c794e4 140 Gene3D G3DSA:3.90.470.20 2 128 1.8E-34 T 26-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RGE_RS20000 60705fea7dec25fddf5591e111c794e4 140 SUPERFAMILY SSF56214 2 128 6.93E-27 T 26-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RGE_RS20000 60705fea7dec25fddf5591e111c794e4 140 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 129 3.5E-29 T 26-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RGE_RS20000 60705fea7dec25fddf5591e111c794e4 140 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 123 6.7E-19 T 26-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RGE_RS20000 60705fea7dec25fddf5591e111c794e4 140 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 129 24.266 T 26-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RGE_RS20000 60705fea7dec25fddf5591e111c794e4 140 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 129 7.8E-23 T 26-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RGE_RS17930 1ecad8bb152077cbfe9499cc967ec61b 365 PANTHER PTHR23264:SF19 1 348 2.0E-160 T 26-04-2016 RGE_RS17930 1ecad8bb152077cbfe9499cc967ec61b 365 SUPERFAMILY SSF117916 2 85 9.16E-16 T 26-04-2016 RGE_RS17930 1ecad8bb152077cbfe9499cc967ec61b 365 ProSitePatterns PS01215 Mrp family signature. 205 221 - T 26-04-2016 IPR000808 Mrp, conserved site GO:0005524 RGE_RS17930 1ecad8bb152077cbfe9499cc967ec61b 365 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 98 341 1.5E-102 T 26-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RGE_RS17930 1ecad8bb152077cbfe9499cc967ec61b 365 Pfam PF01883 Domain of unknown function DUF59 7 77 2.3E-21 T 26-04-2016 IPR002744 Domain of unknown function DUF59 RGE_RS17930 1ecad8bb152077cbfe9499cc967ec61b 365 SUPERFAMILY SSF52540 89 326 3.14E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17930 1ecad8bb152077cbfe9499cc967ec61b 365 Gene3D G3DSA:3.40.50.300 95 340 4.6E-106 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17930 1ecad8bb152077cbfe9499cc967ec61b 365 Hamap MF_02040 Iron-sulfur cluster carrier protein. 93 342 37.353 T 26-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RGE_RS17930 1ecad8bb152077cbfe9499cc967ec61b 365 PANTHER PTHR23264 1 348 2.0E-160 T 26-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RGE_RS13775 995cf59477a6b885e4dba6155f0463fa 194 Gene3D G3DSA:3.30.300.70 21 97 1.1E-13 T 26-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal RGE_RS13775 995cf59477a6b885e4dba6155f0463fa 194 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 19 172 20.848 T 26-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 RGE_RS13775 995cf59477a6b885e4dba6155f0463fa 194 PANTHER PTHR33867:SF1 13 169 4.4E-26 T 26-04-2016 RGE_RS13775 995cf59477a6b885e4dba6155f0463fa 194 PANTHER PTHR33867 13 169 4.4E-26 T 26-04-2016 RGE_RS13775 995cf59477a6b885e4dba6155f0463fa 194 SUPERFAMILY SSF75420 23 100 1.44E-12 T 26-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal RGE_RS13775 995cf59477a6b885e4dba6155f0463fa 194 Pfam PF02576 Putative ribosome maturation factor RimP 25 167 1.3E-30 T 26-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 RGE_RS13775 995cf59477a6b885e4dba6155f0463fa 194 Gene3D G3DSA:2.30.30.180 105 169 8.0E-13 T 26-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal RGE_RS13775 995cf59477a6b885e4dba6155f0463fa 194 SUPERFAMILY SSF74942 101 172 2.22E-13 T 26-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal RGE_RS19865 3b76bb899ce54682d6cc2e29c775c063 321 TIGRFAM TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein 14 320 8.1E-97 T 26-04-2016 IPR022456 PQQ-dependent catabolism-associated beta-propeller protein RGE_RS19865 3b76bb899ce54682d6cc2e29c775c063 321 SUPERFAMILY SSF50974 9 320 8.63E-69 T 26-04-2016 IPR011045 Nitrous oxide reductase, N-terminal RGE_RS19865 3b76bb899ce54682d6cc2e29c775c063 321 Pfam PF10282 Lactonase, 7-bladed beta-propeller 174 300 5.6E-8 T 26-04-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 RGE_RS19865 3b76bb899ce54682d6cc2e29c775c063 321 PANTHER PTHR13833 62 320 6.9E-31 T 26-04-2016 RGE_RS19865 3b76bb899ce54682d6cc2e29c775c063 321 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 103 144 8.9E-11 T 26-04-2016 IPR011964 YVTN beta-propeller repeat RGE_RS19865 3b76bb899ce54682d6cc2e29c775c063 321 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 146 185 2.2E-9 T 26-04-2016 IPR011964 YVTN beta-propeller repeat RGE_RS19865 3b76bb899ce54682d6cc2e29c775c063 321 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 281 318 3.3E-10 T 26-04-2016 IPR011964 YVTN beta-propeller repeat RGE_RS19865 3b76bb899ce54682d6cc2e29c775c063 321 Gene3D G3DSA:2.130.10.10 16 320 1.3E-70 T 26-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 Gene3D G3DSA:1.10.8.60 342 427 2.4E-36 T 26-04-2016 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 Pfam PF07724 AAA domain (Cdc48 subfamily) 601 763 4.9E-55 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 202 333 6.6E-13 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 Gene3D G3DSA:1.10.8.60 782 860 9.5E-29 T 26-04-2016 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 Gene3D G3DSA:3.40.50.300 555 781 8.4E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 Gene3D G3DSA:1.10.1780.10 1 147 1.1E-39 T 26-04-2016 IPR004176 Clp, N-terminal GO:0019538 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 Gene3D G3DSA:3.40.50.300 158 341 6.7E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 SUPERFAMILY SSF52540 158 521 6.76E-99 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 PANTHER PTHR11638 1 515 0.0 T 26-04-2016 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 PANTHER PTHR11638 531 863 0.0 T 26-04-2016 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 93 144 6.2E-8 T 26-04-2016 IPR004176 Clp, N-terminal GO:0019538 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 67 4.5E-9 T 26-04-2016 IPR004176 Clp, N-terminal GO:0019538 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 PANTHER PTHR11638:SF18 1 515 0.0 T 26-04-2016 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 PANTHER PTHR11638:SF18 531 863 0.0 T 26-04-2016 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 859 0.0 T 26-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 636 654 - T 26-04-2016 IPR028299 ClpA/B, conserved site 2 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 SUPERFAMILY SSF52540 551 856 3.75E-84 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 SUPERFAMILY SSF81923 4 155 1.47E-37 T 26-04-2016 IPR004176 Clp, N-terminal GO:0019538 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 770 848 2.1E-24 T 26-04-2016 IPR019489 Clp ATPase, C-terminal RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 SMART SM01086 770 859 2.0E-36 T 26-04-2016 IPR019489 Clp ATPase, C-terminal RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 713 727 2.8E-42 T 26-04-2016 IPR001270 ClpA/B family GO:0005524 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 651 669 2.8E-42 T 26-04-2016 IPR001270 ClpA/B family GO:0005524 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 606 624 2.8E-42 T 26-04-2016 IPR001270 ClpA/B family GO:0005524 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 680 698 2.8E-42 T 26-04-2016 IPR001270 ClpA/B family GO:0005524 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 293 305 - T 26-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 SMART SM00382 602 744 4.5E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS15835 1ac034dc9d97a686b5664f00be4a0e39 864 SMART SM00382 197 342 2.5E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS08255 711c73c208bc5f0da1f87b6c25d94f90 469 SMART SM00382 188 371 4.4E-9 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS08255 711c73c208bc5f0da1f87b6c25d94f90 469 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 378 387 - T 26-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS08255 711c73c208bc5f0da1f87b6c25d94f90 469 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 37 97 2.3E-4 T 26-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS08255 711c73c208bc5f0da1f87b6c25d94f90 469 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 26 467 4.1E-172 T 26-04-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS08255 711c73c208bc5f0da1f87b6c25d94f90 469 PANTHER PTHR15184:SF9 27 97 3.4E-216 T 26-04-2016 IPR032463 ATPase, type III secretion system, FliI GO:0016887|GO:0030257|GO:0044780 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS08255 711c73c208bc5f0da1f87b6c25d94f90 469 PANTHER PTHR15184:SF9 118 468 3.4E-216 T 26-04-2016 IPR032463 ATPase, type III secretion system, FliI GO:0016887|GO:0030257|GO:0044780 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS08255 711c73c208bc5f0da1f87b6c25d94f90 469 SUPERFAMILY SSF52540 123 392 9.52E-94 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08255 711c73c208bc5f0da1f87b6c25d94f90 469 PANTHER PTHR15184 27 97 3.4E-216 T 26-04-2016 RGE_RS08255 711c73c208bc5f0da1f87b6c25d94f90 469 PANTHER PTHR15184 118 468 3.4E-216 T 26-04-2016 RGE_RS08255 711c73c208bc5f0da1f87b6c25d94f90 469 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 33 465 2.5E-191 T 26-04-2016 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS08255 711c73c208bc5f0da1f87b6c25d94f90 469 Gene3D G3DSA:3.40.50.300 151 423 3.0E-91 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08255 711c73c208bc5f0da1f87b6c25d94f90 469 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 176 387 4.2E-73 T 26-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS02310 d1a8fac100a0691a51c1a8aebd99267b 170 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 13 166 31.509 T 26-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RGE_RS02310 d1a8fac100a0691a51c1a8aebd99267b 170 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 13 166 1.3E-61 T 26-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RGE_RS02310 d1a8fac100a0691a51c1a8aebd99267b 170 SUPERFAMILY SSF52255 12 168 3.4E-63 T 26-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RGE_RS02310 d1a8fac100a0691a51c1a8aebd99267b 170 PIRSF PIRSF001338 8 170 5.4E-65 T 26-04-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 RGE_RS02310 d1a8fac100a0691a51c1a8aebd99267b 170 SMART SM01001 11 162 1.9E-96 T 26-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RGE_RS02310 d1a8fac100a0691a51c1a8aebd99267b 170 Pfam PF00731 AIR carboxylase 12 160 2.2E-62 T 26-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RGE_RS02310 d1a8fac100a0691a51c1a8aebd99267b 170 PANTHER PTHR23046 2 170 2.1E-80 T 26-04-2016 RGE_RS02310 d1a8fac100a0691a51c1a8aebd99267b 170 Gene3D G3DSA:3.40.50.7700 8 169 1.9E-72 T 26-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RGE_RS02310 d1a8fac100a0691a51c1a8aebd99267b 170 PANTHER PTHR23046:SF2 2 170 2.1E-80 T 26-04-2016 RGE_RS17230 db0a3fc13fae5f0dcf602fc22798f40f 321 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 7 284 1.0E-101 T 26-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RGE_RS17230 db0a3fc13fae5f0dcf602fc22798f40f 321 PANTHER PTHR30426 4 306 2.5E-152 T 26-04-2016 RGE_RS17230 db0a3fc13fae5f0dcf602fc22798f40f 321 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 5 286 38.176 T 26-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RGE_RS17230 db0a3fc13fae5f0dcf602fc22798f40f 321 Pfam PF02401 LytB protein 8 282 1.6E-94 T 26-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RGE_RS19125 b52b41822c44c816af40d58c61a28ea6 629 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 423 437 - T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS19125 b52b41822c44c816af40d58c61a28ea6 629 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 61 162 3.2E-21 T 26-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 RGE_RS19125 b52b41822c44c816af40d58c61a28ea6 629 Gene3D G3DSA:3.40.50.300 332 627 2.9E-99 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19125 b52b41822c44c816af40d58c61a28ea6 629 PANTHER PTHR30258 545 627 2.7E-191 T 26-04-2016 RGE_RS19125 b52b41822c44c816af40d58c61a28ea6 629 PANTHER PTHR30258:SF1 545 627 2.7E-191 T 26-04-2016 RGE_RS19125 b52b41822c44c816af40d58c61a28ea6 629 PANTHER PTHR30258:SF1 14 518 2.7E-191 T 26-04-2016 RGE_RS19125 b52b41822c44c816af40d58c61a28ea6 629 Gene3D G3DSA:3.30.450.90 198 328 1.6E-37 T 26-04-2016 RGE_RS19125 b52b41822c44c816af40d58c61a28ea6 629 SUPERFAMILY SSF160246 22 162 1.83E-32 T 26-04-2016 RGE_RS19125 b52b41822c44c816af40d58c61a28ea6 629 SUPERFAMILY SSF52540 548 626 5.68E-88 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19125 b52b41822c44c816af40d58c61a28ea6 629 SUPERFAMILY SSF52540 215 520 5.68E-88 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19125 b52b41822c44c816af40d58c61a28ea6 629 Pfam PF00437 Type II/IV secretion system protein 227 495 1.1E-71 T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS19125 b52b41822c44c816af40d58c61a28ea6 629 PANTHER PTHR30258 14 518 2.7E-191 T 26-04-2016 RGE_RS22130 a1bd00bb9e1d77dfef7943dd4527cd5a 254 Pfam PF00398 Ribosomal RNA adenine dimethylase 3 247 1.9E-58 T 26-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RGE_RS22130 a1bd00bb9e1d77dfef7943dd4527cd5a 254 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 4 250 2.4E-79 T 26-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RGE_RS22130 a1bd00bb9e1d77dfef7943dd4527cd5a 254 SMART SM00650 19 188 2.4E-79 T 26-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 RGE_RS22130 a1bd00bb9e1d77dfef7943dd4527cd5a 254 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 3 252 54.34 T 26-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RGE_RS22130 a1bd00bb9e1d77dfef7943dd4527cd5a 254 PANTHER PTHR11727 3 250 9.1E-84 T 26-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RGE_RS22130 a1bd00bb9e1d77dfef7943dd4527cd5a 254 Gene3D G3DSA:1.10.8.100 192 251 1.5E-14 T 26-04-2016 IPR023165 rRNA adenine dimethylase-like RGE_RS22130 a1bd00bb9e1d77dfef7943dd4527cd5a 254 SUPERFAMILY SSF53335 3 251 6.48E-68 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS22130 a1bd00bb9e1d77dfef7943dd4527cd5a 254 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 35 62 - T 26-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 RGE_RS22130 a1bd00bb9e1d77dfef7943dd4527cd5a 254 Gene3D G3DSA:3.40.50.150 2 187 2.2E-68 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS19540 6928dd4cc97f775c7cec31b93f057ead 388 PANTHER PTHR34296:SF1 37 377 4.9E-114 T 26-04-2016 RGE_RS19540 6928dd4cc97f775c7cec31b93f057ead 388 Gene3D G3DSA:3.40.50.2300 161 317 1.9E-47 T 26-04-2016 RGE_RS19540 6928dd4cc97f775c7cec31b93f057ead 388 Pfam PF02608 Basic membrane protein 56 326 2.2E-54 T 26-04-2016 IPR003760 Basic membrane lipoprotein GO:0005886 RGE_RS19540 6928dd4cc97f775c7cec31b93f057ead 388 PANTHER PTHR34296 37 377 4.9E-114 T 26-04-2016 RGE_RS19120 6ec6d64311f4038484e09d9650f047b6 1201 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 8 186 8.1E-57 T 26-04-2016 IPR008040 Hydantoinaseoxoprolinase, N-terminal RGE_RS19120 6ec6d64311f4038484e09d9650f047b6 1201 PANTHER PTHR11365 1 1198 0.0 T 26-04-2016 RGE_RS19120 6ec6d64311f4038484e09d9650f047b6 1201 Pfam PF01968 Hydantoinase/oxoprolinase 206 490 4.8E-108 T 26-04-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 RGE_RS19120 6ec6d64311f4038484e09d9650f047b6 1201 Pfam PF02538 Hydantoinase B/oxoprolinase 693 1198 4.8E-202 T 26-04-2016 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 RGE_RS19120 6ec6d64311f4038484e09d9650f047b6 1201 PANTHER PTHR11365:SF2 1 1198 0.0 T 26-04-2016 RGE_RS04485 9bf6988aa965fb9870c1c4c66995f3f3 185 Pfam PF14279 HNH endonuclease 91 145 8.7E-17 T 26-04-2016 IPR029471 HNH endonuclease 5 RGE_RS04485 9bf6988aa965fb9870c1c4c66995f3f3 185 PANTHER PTHR33877 1 179 4.0E-28 T 26-04-2016 RGE_RS04485 9bf6988aa965fb9870c1c4c66995f3f3 185 SMART SM00507 80 131 1.3E-8 T 26-04-2016 IPR003615 HNH nuclease RGE_RS14990 e94840130bac222bed28628dcf075159 521 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 326 513 3.7E-61 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS14990 e94840130bac222bed28628dcf075159 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 190 210 7.0E-53 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS14990 e94840130bac222bed28628dcf075159 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 7.0E-53 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS14990 e94840130bac222bed28628dcf075159 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 7.0E-53 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS14990 e94840130bac222bed28628dcf075159 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 7.0E-53 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS14990 e94840130bac222bed28628dcf075159 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 7.0E-53 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS14990 e94840130bac222bed28628dcf075159 521 SUPERFAMILY SSF58104 234 516 1.83E-74 T 26-04-2016 RGE_RS14990 e94840130bac222bed28628dcf075159 521 Pfam PF00672 HAMP domain 195 262 3.6E-11 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS14990 e94840130bac222bed28628dcf075159 521 PANTHER PTHR32089:SF63 66 517 1.2E-142 T 26-04-2016 RGE_RS14990 e94840130bac222bed28628dcf075159 521 Gene3D G3DSA:1.10.287.950 281 486 3.2E-61 T 26-04-2016 RGE_RS14990 e94840130bac222bed28628dcf075159 521 SMART SM00283 267 514 7.8E-94 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS14990 e94840130bac222bed28628dcf075159 521 SMART SM00304 214 266 7.6E-7 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS14990 e94840130bac222bed28628dcf075159 521 PANTHER PTHR32089 66 517 1.2E-142 T 26-04-2016 RGE_RS14990 e94840130bac222bed28628dcf075159 521 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 167 1.6E-10 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS20925 cd2f67a94c49eae6725aab6d9a567b8e 317 SUPERFAMILY SSF53822 25 312 9.16E-23 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS20925 cd2f67a94c49eae6725aab6d9a567b8e 317 Gene3D G3DSA:3.40.50.2300 145 311 1.7E-8 T 26-04-2016 RGE_RS20925 cd2f67a94c49eae6725aab6d9a567b8e 317 Gene3D G3DSA:3.40.50.2300 25 144 6.9E-11 T 26-04-2016 RGE_RS20925 cd2f67a94c49eae6725aab6d9a567b8e 317 Pfam PF13407 Periplasmic binding protein domain 25 300 8.9E-31 T 26-04-2016 IPR025997 Periplasmic binding protein RGE_RS15385 61b29a124977654644bcd71168585114 424 SUPERFAMILY SSF53633 4 254 1.57E-73 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS15385 61b29a124977654644bcd71168585114 424 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 26-04-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RGE_RS15385 61b29a124977654644bcd71168585114 424 Gene3D G3DSA:3.40.1160.10 2 258 9.1E-75 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS15385 61b29a124977654644bcd71168585114 424 SUPERFAMILY SSF55021 261 339 1.62E-18 T 26-04-2016 RGE_RS15385 61b29a124977654644bcd71168585114 424 PANTHER PTHR21499:SF27 1 422 1.3E-154 T 26-04-2016 RGE_RS15385 61b29a124977654644bcd71168585114 424 Pfam PF13840 ACT domain 353 413 6.6E-16 T 26-04-2016 IPR027795 GATS-like ACT domain RGE_RS15385 61b29a124977654644bcd71168585114 424 SUPERFAMILY SSF55021 346 418 4.15E-23 T 26-04-2016 RGE_RS15385 61b29a124977654644bcd71168585114 424 Pfam PF01842 ACT domain 280 337 9.2E-10 T 26-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RGE_RS15385 61b29a124977654644bcd71168585114 424 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 1 415 4.4E-128 T 26-04-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RGE_RS15385 61b29a124977654644bcd71168585114 424 Pfam PF00696 Amino acid kinase family 3 233 2.8E-49 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS15385 61b29a124977654644bcd71168585114 424 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 417 1.8E-121 T 26-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RGE_RS15385 61b29a124977654644bcd71168585114 424 PANTHER PTHR21499 1 422 1.3E-154 T 26-04-2016 RGE_RS15385 61b29a124977654644bcd71168585114 424 PRINTS PR00474 Glutamate 5-kinase family signature 156 183 5.6E-5 T 26-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RGE_RS15385 61b29a124977654644bcd71168585114 424 PRINTS PR00474 Glutamate 5-kinase family signature 33 47 5.6E-5 T 26-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RGE_RS15385 61b29a124977654644bcd71168585114 424 PIRSF PIRSF000726 60 424 2.9E-135 T 26-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RGE_RS03135 42243f8187df0b8c884bb9809f155f41 128 PANTHER PTHR30204 1 127 2.1E-41 T 26-04-2016 RGE_RS03135 42243f8187df0b8c884bb9809f155f41 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 18 31 8.5E-11 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS03135 42243f8187df0b8c884bb9809f155f41 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 7 18 8.5E-11 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS03135 42243f8187df0b8c884bb9809f155f41 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 42 62 8.5E-11 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS03135 42243f8187df0b8c884bb9809f155f41 128 ProSitePatterns PS00552 MerR-type HTH domain signature. 9 31 - T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS03135 42243f8187df0b8c884bb9809f155f41 128 Gene3D G3DSA:1.10.1660.10 6 59 3.7E-26 T 26-04-2016 RGE_RS03135 42243f8187df0b8c884bb9809f155f41 128 Gene3D G3DSA:1.10.1660.10 60 117 4.0E-14 T 26-04-2016 RGE_RS03135 42243f8187df0b8c884bb9809f155f41 128 Pfam PF13411 MerR HTH family regulatory protein 7 71 4.1E-20 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS03135 42243f8187df0b8c884bb9809f155f41 128 PANTHER PTHR30204:SF2 1 127 2.1E-41 T 26-04-2016 RGE_RS03135 42243f8187df0b8c884bb9809f155f41 128 SMART SM00422 6 75 1.6E-26 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS03135 42243f8187df0b8c884bb9809f155f41 128 SUPERFAMILY SSF46955 6 120 2.89E-35 T 26-04-2016 IPR009061 Putative DNA-binding domain RGE_RS11635 5efd85aeea51f38633aff3e36e172274 267 Gene3D G3DSA:3.40.50.620 90 219 3.2E-28 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS11635 5efd85aeea51f38633aff3e36e172274 267 PANTHER PTHR30336 16 264 3.6E-27 T 26-04-2016 RGE_RS11635 5efd85aeea51f38633aff3e36e172274 267 PANTHER PTHR30336:SF1 16 264 3.6E-27 T 26-04-2016 RGE_RS11635 5efd85aeea51f38633aff3e36e172274 267 Pfam PF02698 DUF218 domain 93 262 1.5E-25 T 26-04-2016 IPR003848 Domain of unknown function DUF218 RGE_RS06490 4b50ad883987934336dd822fa68afb79 210 Hamap MF_01969 Kynurenine formamidase [kynB]. 5 209 41.692 T 26-04-2016 IPR017484 Kynurenine formamidase, bacteria GO:0004328|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 RGE_RS06490 4b50ad883987934336dd822fa68afb79 210 Pfam PF04199 Putative cyclase 8 152 8.4E-14 T 26-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 RGE_RS06490 4b50ad883987934336dd822fa68afb79 210 Gene3D G3DSA:3.50.30.50 4 207 1.1E-50 T 26-04-2016 RGE_RS06490 4b50ad883987934336dd822fa68afb79 210 PANTHER PTHR31118 5 206 3.1E-38 T 26-04-2016 RGE_RS06490 4b50ad883987934336dd822fa68afb79 210 SUPERFAMILY SSF102198 4 207 4.45E-53 T 26-04-2016 RGE_RS06490 4b50ad883987934336dd822fa68afb79 210 TIGRFAM TIGR03035 trp_arylform: arylformamidase 5 209 2.9E-84 T 26-04-2016 IPR017484 Kynurenine formamidase, bacteria GO:0004328|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 RGE_RS09910 95e4ef217d8b82fa089f6db9b8a019a1 208 Gene3D G3DSA:3.30.70.20 142 189 8.0E-30 T 26-04-2016 RGE_RS09910 95e4ef217d8b82fa089f6db9b8a019a1 208 Gene3D G3DSA:3.30.70.20 6 74 8.0E-30 T 26-04-2016 RGE_RS09910 95e4ef217d8b82fa089f6db9b8a019a1 208 Pfam PF12800 4Fe-4S binding domain 15 27 0.035 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS09910 95e4ef217d8b82fa089f6db9b8a019a1 208 Pfam PF13247 4Fe-4S dicluster domain 61 156 1.2E-27 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS09910 95e4ef217d8b82fa089f6db9b8a019a1 208 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 102 113 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS09910 95e4ef217d8b82fa089f6db9b8a019a1 208 Gene3D G3DSA:3.30.70.20 75 107 5.0E-12 T 26-04-2016 RGE_RS09910 95e4ef217d8b82fa089f6db9b8a019a1 208 PANTHER PTHR11938 1 160 1.1E-79 T 26-04-2016 RGE_RS09910 95e4ef217d8b82fa089f6db9b8a019a1 208 SUPERFAMILY SSF54862 1 201 6.17E-68 T 26-04-2016 RGE_RS09910 95e4ef217d8b82fa089f6db9b8a019a1 208 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 6 166 5.0E-82 T 26-04-2016 IPR014297 Dimethylsulphoxide reductase, chain B RGE_RS09910 95e4ef217d8b82fa089f6db9b8a019a1 208 Gene3D G3DSA:3.30.70.20 108 141 3.0E-14 T 26-04-2016 RGE_RS09910 95e4ef217d8b82fa089f6db9b8a019a1 208 PANTHER PTHR11938:SF85 1 160 1.1E-79 T 26-04-2016 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 Gene3D G3DSA:3.40.190.10 138 296 2.2E-45 T 26-04-2016 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 PRINTS PR00181 Maltose binding protein signature 129 148 1.2E-49 T 26-04-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 PRINTS PR00181 Maltose binding protein signature 170 189 1.2E-49 T 26-04-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 PRINTS PR00181 Maltose binding protein signature 69 87 1.2E-49 T 26-04-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 PRINTS PR00181 Maltose binding protein signature 150 169 1.2E-49 T 26-04-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 PRINTS PR00181 Maltose binding protein signature 299 320 1.2E-49 T 26-04-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 PRINTS PR00181 Maltose binding protein signature 35 53 1.2E-49 T 26-04-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 PRINTS PR00181 Maltose binding protein signature 357 376 1.2E-49 T 26-04-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 PRINTS PR00181 Maltose binding protein signature 233 252 1.2E-49 T 26-04-2016 IPR006060 Maltose binding protein GO:0005363|GO:0015768 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 Gene3D G3DSA:3.40.190.10 32 137 2.9E-44 T 26-04-2016 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 Gene3D G3DSA:3.40.190.10 297 357 2.9E-44 T 26-04-2016 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 Pfam PF13416 Bacterial extracellular solute-binding protein 49 334 9.5E-41 T 26-04-2016 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 PANTHER PTHR30061 3 394 1.0E-110 T 26-04-2016 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 PANTHER PTHR30061:SF21 3 394 1.0E-110 T 26-04-2016 RGE_RS01280 59aab430da0ba82e6ae5df45918e615e 397 SUPERFAMILY SSF53850 26 393 1.19E-88 T 26-04-2016 RGE_RS07955 46e11aeb1df7e749100638e4395cee66 639 PANTHER PTHR13847:SF44 214 638 6.1E-23 T 26-04-2016 RGE_RS07955 46e11aeb1df7e749100638e4395cee66 639 Pfam PF01266 FAD dependent oxidoreductase 253 609 3.0E-33 T 26-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RGE_RS07955 46e11aeb1df7e749100638e4395cee66 639 SUPERFAMILY SSF51905 253 465 4.4E-25 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS07955 46e11aeb1df7e749100638e4395cee66 639 SUPERFAMILY SSF51905 582 632 4.4E-25 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS07955 46e11aeb1df7e749100638e4395cee66 639 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 254 637 6.8E-86 T 26-04-2016 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 RGE_RS07955 46e11aeb1df7e749100638e4395cee66 639 PANTHER PTHR13847 214 638 6.1E-23 T 26-04-2016 RGE_RS07955 46e11aeb1df7e749100638e4395cee66 639 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 114 231 2.2E-32 T 26-04-2016 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 RGE_RS07955 46e11aeb1df7e749100638e4395cee66 639 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 7 633 22.775 T 26-04-2016 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 RGE_RS07955 46e11aeb1df7e749100638e4395cee66 639 Gene3D G3DSA:3.40.50.150 12 237 5.1E-83 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS07955 46e11aeb1df7e749100638e4395cee66 639 Gene3D G3DSA:3.50.50.60 242 463 2.5E-27 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS07955 46e11aeb1df7e749100638e4395cee66 639 Gene3D G3DSA:3.50.50.60 555 630 2.5E-27 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 SUPERFAMILY SSF52374 6 232 9.32E-143 T 26-04-2016 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 SUPERFAMILY SSF52374 433 686 9.32E-143 T 26-04-2016 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 874 22.201 T 26-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 SUPERFAMILY SSF47323 684 874 6.92E-26 T 26-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 PANTHER PTHR11946 254 592 0.0 T 26-04-2016 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 PANTHER PTHR11946 637 874 0.0 T 26-04-2016 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 PANTHER PTHR11946 1 206 0.0 T 26-04-2016 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 228 419 3.0E-62 T 26-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 Gene3D G3DSA:3.40.50.620 7 233 8.1E-126 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 Gene3D G3DSA:3.40.50.620 637 665 8.1E-126 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 Gene3D G3DSA:3.40.50.620 507 591 8.1E-126 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 Pfam PF09334 tRNA synthetases class I (M) 38 171 1.4E-19 T 26-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 Pfam PF08264 Anticodon-binding domain of tRNA 718 837 3.1E-12 T 26-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 26-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 435 590 1.0E-7 T 26-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 Gene3D G3DSA:3.90.740.10 234 474 7.1E-60 T 26-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 3.9E-44 T 26-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 221 240 3.9E-44 T 26-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 3.9E-44 T 26-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 575 585 3.9E-44 T 26-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 542 564 3.9E-44 T 26-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 504 522 3.9E-44 T 26-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 SUPERFAMILY SSF50677 236 431 1.96E-49 T 26-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 PANTHER PTHR11946:SF7 254 592 0.0 T 26-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 PANTHER PTHR11946:SF7 637 874 0.0 T 26-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 PANTHER PTHR11946:SF7 1 206 0.0 T 26-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 Gene3D G3DSA:1.10.730.10 666 810 3.8E-31 T 26-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS22070 231a4281062c28e9eb02f4291f1526db 874 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 8 874 0.0 T 26-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 SUPERFAMILY SSF55257 4 50 1.08E-30 T 26-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 SUPERFAMILY SSF55257 175 229 1.08E-30 T 26-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 2 316 35.584 T 26-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 SUPERFAMILY SSF47789 250 323 8.11E-26 T 26-04-2016 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 PANTHER PTHR32108:SF0 6 328 2.8E-141 T 26-04-2016 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 PANTHER PTHR32108 6 328 2.8E-141 T 26-04-2016 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 SMART SM00662 20 230 1.3E-99 T 26-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 251 307 1.5E-24 T 26-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 21 315 2.0E-108 T 26-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 SUPERFAMILY SSF56553 50 174 2.75E-42 T 26-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 Gene3D G3DSA:1.10.150.20 246 323 1.5E-35 T 26-04-2016 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 255 325 1.0E-32 T 26-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 Gene3D G3DSA:3.30.1360.10 4 62 3.8E-10 T 26-04-2016 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 Gene3D G3DSA:2.170.120.12 63 173 2.2E-42 T 26-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 26 224 1.2E-23 T 26-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01745 aa6bdc3ee2d27e2201d413731c8c6d06 328 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 61 150 1.8E-25 T 26-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS14270 ac3860c6535b93c7bd87a036e9209291 162 Gene3D G3DSA:3.30.70.1150 51 132 1.6E-33 T 26-04-2016 RGE_RS14270 ac3860c6535b93c7bd87a036e9209291 162 Pfam PF01402 Ribbon-helix-helix protein, copG family 3 39 5.6E-8 T 26-04-2016 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 RGE_RS14270 ac3860c6535b93c7bd87a036e9209291 162 Hamap MF_00476 Putative nickel-responsive regulator [nikR]. 1 132 26.457 T 26-04-2016 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 RGE_RS14270 ac3860c6535b93c7bd87a036e9209291 162 Gene3D G3DSA:1.10.1220.10 1 44 2.4E-17 T 26-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RGE_RS14270 ac3860c6535b93c7bd87a036e9209291 162 PANTHER PTHR34719:SF2 1 136 1.1E-44 T 26-04-2016 RGE_RS14270 ac3860c6535b93c7bd87a036e9209291 162 SUPERFAMILY SSF55021 52 132 1.08E-25 T 26-04-2016 RGE_RS14270 ac3860c6535b93c7bd87a036e9209291 162 PANTHER PTHR34719 1 136 1.1E-44 T 26-04-2016 RGE_RS14270 ac3860c6535b93c7bd87a036e9209291 162 SUPERFAMILY SSF47598 1 42 9.45E-10 T 26-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RGE_RS14270 ac3860c6535b93c7bd87a036e9209291 162 Pfam PF08753 NikR C terminal nickel binding domain 54 129 1.8E-30 T 26-04-2016 IPR014864 Transcription factor, NikR, nickel binding C-terminal RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 SMART SM00481 22 89 3.0E-15 T 26-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 Gene3D G3DSA:1.10.150.280 824 866 7.9E-6 T 26-04-2016 RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 PANTHER PTHR32294 17 1041 0.0 T 26-04-2016 RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 Gene3D G3DSA:3.20.20.140 28 223 2.6E-7 T 26-04-2016 RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 21 1051 13.721 T 26-04-2016 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 297 720 1.9E-151 T 26-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 Pfam PF01336 OB-fold nucleic acid binding domain 961 1035 2.4E-6 T 26-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 Pfam PF14579 Helix-hairpin-helix motif 795 882 4.4E-22 T 26-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 PANTHER PTHR32294:SF4 17 1041 0.0 T 26-04-2016 RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 SUPERFAMILY SSF89550 136 212 1.73E-9 T 26-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 SUPERFAMILY SSF89550 28 106 1.73E-9 T 26-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 Pfam PF02811 PHP domain 23 119 1.7E-13 T 26-04-2016 IPR004013 PHP domain GO:0003824 RGE_RS08845 6a7bca5cff4099d0e47740cba01bc10e 1051 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 22 996 6.8E-172 T 26-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS05390 d19c800df0389c8838e729f5e31ec686 533 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 444 1.3E-98 T 26-04-2016 IPR000914 Solute-binding protein family 5 domain RGE_RS05390 d19c800df0389c8838e729f5e31ec686 533 Gene3D G3DSA:3.10.105.10 287 499 1.1E-60 T 26-04-2016 RGE_RS05390 d19c800df0389c8838e729f5e31ec686 533 PANTHER PTHR30290 9 533 1.3E-186 T 26-04-2016 RGE_RS05390 d19c800df0389c8838e729f5e31ec686 533 Gene3D G3DSA:3.90.76.10 36 216 2.3E-44 T 26-04-2016 RGE_RS05390 d19c800df0389c8838e729f5e31ec686 533 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 75 97 - T 26-04-2016 IPR023765 Solute-binding protein family 5, conserved site RGE_RS05390 d19c800df0389c8838e729f5e31ec686 533 PANTHER PTHR30290:SF14 9 533 1.3E-186 T 26-04-2016 RGE_RS05390 d19c800df0389c8838e729f5e31ec686 533 PIRSF PIRSF002741 6 532 7.9E-117 T 26-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RGE_RS05390 d19c800df0389c8838e729f5e31ec686 533 SUPERFAMILY SSF53850 26 532 1.59E-144 T 26-04-2016 RGE_RS07990 61614289fd32fdfa102a5cc34d67891b 90 Pfam PF00216 Bacterial DNA-binding protein 1 88 7.8E-34 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS07990 61614289fd32fdfa102a5cc34d67891b 90 SMART SM00411 1 90 1.2E-39 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS07990 61614289fd32fdfa102a5cc34d67891b 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.9E-19 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS07990 61614289fd32fdfa102a5cc34d67891b 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.9E-19 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS07990 61614289fd32fdfa102a5cc34d67891b 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.9E-19 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS07990 61614289fd32fdfa102a5cc34d67891b 90 Gene3D G3DSA:4.10.520.10 1 89 2.0E-35 T 26-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RGE_RS07990 61614289fd32fdfa102a5cc34d67891b 90 PANTHER PTHR33175 1 87 5.4E-41 T 26-04-2016 RGE_RS07990 61614289fd32fdfa102a5cc34d67891b 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 26-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RGE_RS07990 61614289fd32fdfa102a5cc34d67891b 90 SUPERFAMILY SSF47729 1 89 6.33E-31 T 26-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RGE_RS11280 7db681961e162e55e92990645ec5b8a4 290 Gene3D G3DSA:3.20.20.60 3 234 3.1E-69 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS11280 7db681961e162e55e92990645ec5b8a4 290 TIGRFAM TIGR01588 citE: citrate (pro-3S)-lyase, beta subunit 3 288 8.5E-144 T 26-04-2016 IPR006475 Citrate lyase, beta subunit, bacteria GO:0005737|GO:0006084|GO:0008816|GO:0009346 KEGG: 00720+4.1.3.34|MetaCyc: PWY-5392|MetaCyc: PWY-6038 RGE_RS11280 7db681961e162e55e92990645ec5b8a4 290 PANTHER PTHR32308 3 289 7.5E-106 T 26-04-2016 IPR011206 Citrate lyase beta subunit-like RGE_RS11280 7db681961e162e55e92990645ec5b8a4 290 SUPERFAMILY SSF51621 2 233 7.33E-59 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS11280 7db681961e162e55e92990645ec5b8a4 290 PANTHER PTHR32308:SF0 3 289 7.5E-106 T 26-04-2016 RGE_RS11280 7db681961e162e55e92990645ec5b8a4 290 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 5 223 2.1E-75 T 26-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RGE_RS11280 7db681961e162e55e92990645ec5b8a4 290 PIRSF PIRSF015582 1 290 4.0E-77 T 26-04-2016 IPR011206 Citrate lyase beta subunit-like RGE_RS13570 6c255cd252afddef53f387ef784b4aff 215 Gene3D G3DSA:3.30.1330.60 82 203 3.1E-32 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS13570 6c255cd252afddef53f387ef784b4aff 215 SUPERFAMILY SSF103088 84 204 3.4E-29 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS13570 6c255cd252afddef53f387ef784b4aff 215 PANTHER PTHR30128 86 209 7.5E-29 T 26-04-2016 RGE_RS13570 6c255cd252afddef53f387ef784b4aff 215 Pfam PF00691 OmpA family 94 199 2.1E-19 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS19270 00337d020c38c9f191e9afd767408940 427 PANTHER PTHR30483 4 424 5.0E-210 T 26-04-2016 RGE_RS19270 00337d020c38c9f191e9afd767408940 427 Gene3D G3DSA:3.40.50.2300 32 147 9.0E-4 T 26-04-2016 RGE_RS19270 00337d020c38c9f191e9afd767408940 427 PANTHER PTHR30483:SF8 4 424 5.0E-210 T 26-04-2016 RGE_RS19270 00337d020c38c9f191e9afd767408940 427 Pfam PF13433 Periplasmic binding protein domain 33 412 2.1E-173 T 26-04-2016 RGE_RS19270 00337d020c38c9f191e9afd767408940 427 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 33 408 2.7E-179 T 26-04-2016 IPR017777 ABC transporter, urea, substrate-binding, UrtA RGE_RS19270 00337d020c38c9f191e9afd767408940 427 SUPERFAMILY SSF53822 32 415 4.28E-93 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS19270 00337d020c38c9f191e9afd767408940 427 Gene3D G3DSA:3.40.50.2300 148 349 6.4E-72 T 26-04-2016 RGE_RS09400 1eb568bf4e8e6bd7d570e2cbcc64fe40 249 PIRSF PIRSF036525 1 249 2.5E-105 T 26-04-2016 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376|UniPathway: UPA00148 RGE_RS09400 1eb568bf4e8e6bd7d570e2cbcc64fe40 249 TIGRFAM TIGR02434 CobF: precorrin-6A synthase (deacetylating) 3 246 1.3E-97 T 26-04-2016 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376|UniPathway: UPA00148 RGE_RS09400 1eb568bf4e8e6bd7d570e2cbcc64fe40 249 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 220 4.3E-31 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09400 1eb568bf4e8e6bd7d570e2cbcc64fe40 249 Gene3D G3DSA:3.30.950.10 139 247 7.6E-49 T 26-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RGE_RS09400 1eb568bf4e8e6bd7d570e2cbcc64fe40 249 PANTHER PTHR10882 3 34 8.3E-37 T 26-04-2016 RGE_RS09400 1eb568bf4e8e6bd7d570e2cbcc64fe40 249 PANTHER PTHR10882 58 169 8.3E-37 T 26-04-2016 RGE_RS09400 1eb568bf4e8e6bd7d570e2cbcc64fe40 249 PANTHER PTHR10882:SF1 3 34 8.3E-37 T 26-04-2016 RGE_RS09400 1eb568bf4e8e6bd7d570e2cbcc64fe40 249 PANTHER PTHR10882:SF1 58 169 8.3E-37 T 26-04-2016 RGE_RS09400 1eb568bf4e8e6bd7d570e2cbcc64fe40 249 Gene3D G3DSA:3.40.1010.10 3 138 6.0E-36 T 26-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RGE_RS09400 1eb568bf4e8e6bd7d570e2cbcc64fe40 249 SUPERFAMILY SSF53790 4 246 9.03E-38 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS11795 39ec8912551aa63b1a2ad0a662a94515 307 SUPERFAMILY SSF52540 6 227 9.4E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11795 39ec8912551aa63b1a2ad0a662a94515 307 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS11795 39ec8912551aa63b1a2ad0a662a94515 307 Pfam PF00005 ABC transporter 23 164 7.5E-32 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS11795 39ec8912551aa63b1a2ad0a662a94515 307 PANTHER PTHR24220:SF0 8 240 2.6E-100 T 26-04-2016 RGE_RS11795 39ec8912551aa63b1a2ad0a662a94515 307 SMART SM00382 31 210 2.8E-13 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11795 39ec8912551aa63b1a2ad0a662a94515 307 Gene3D G3DSA:3.40.50.300 2 226 1.1E-69 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11795 39ec8912551aa63b1a2ad0a662a94515 307 PANTHER PTHR24220 8 240 2.6E-100 T 26-04-2016 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 SUPERFAMILY SSF54980 403 517 1.73E-29 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 SMART SM00838 403 488 0.0085 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 PANTHER PTHR23115:SF14 188 597 3.5E-274 T 26-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 PANTHER PTHR23115:SF14 3 171 3.5E-274 T 26-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 SUPERFAMILY SSF50447 151 304 1.65E-30 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 PANTHER PTHR23115 188 597 3.5E-274 T 26-04-2016 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 PANTHER PTHR23115 3 171 3.5E-274 T 26-04-2016 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 Pfam PF00009 Elongation factor Tu GTP binding domain 4 199 2.0E-56 T 26-04-2016 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 603 1.3E-280 T 26-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 134 2.2E-24 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 Pfam PF03144 Elongation factor Tu domain 2 223 294 1.3E-8 T 26-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 PRINTS PR00315 GTP-binding elongation factor signature 123 132 5.7E-16 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 PRINTS PR00315 GTP-binding elongation factor signature 51 59 5.7E-16 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 PRINTS PR00315 GTP-binding elongation factor signature 7 20 5.7E-16 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 PRINTS PR00315 GTP-binding elongation factor signature 87 98 5.7E-16 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 PRINTS PR00315 GTP-binding elongation factor signature 71 81 5.7E-16 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 Gene3D G3DSA:3.30.70.240 406 486 1.6E-29 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 26-04-2016 IPR031157 Tr-type G domain, conserved site RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 Gene3D G3DSA:2.40.50.250 487 581 1.5E-38 T 26-04-2016 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 Pfam PF00679 Elongation factor G C-terminus 402 485 6.5E-21 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 SUPERFAMILY SSF52540 3 210 6.32E-55 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 Gene3D G3DSA:3.40.50.300 3 209 2.2E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 Gene3D G3DSA:2.40.30.10 210 308 8.4E-25 T 26-04-2016 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 Gene3D G3DSA:3.30.70.870 309 405 1.2E-38 T 26-04-2016 RGE_RS13750 43577cd2d72019bc70cc5a03f863cdb8 609 SUPERFAMILY SSF54980 307 392 7.55E-14 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS21035 f564741938da196bc42f63bbbf6bce4f 99 SUPERFAMILY SSF54862 33 97 3.02E-11 T 26-04-2016 RGE_RS21035 f564741938da196bc42f63bbbf6bce4f 99 PIRSF PIRSF036548 2 99 2.3E-39 T 26-04-2016 IPR012206 Ferredoxin-like, FixX GO:0005506 RGE_RS21035 f564741938da196bc42f63bbbf6bce4f 99 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 19 93 3.6E-5 T 26-04-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 RGE_RS21035 f564741938da196bc42f63bbbf6bce4f 99 PANTHER PTHR10617 8 99 2.2E-19 T 26-04-2016 RGE_RS21035 f564741938da196bc42f63bbbf6bce4f 99 Gene3D G3DSA:3.30.70.20 22 81 1.1E-7 T 26-04-2016 RGE_RS21035 f564741938da196bc42f63bbbf6bce4f 99 PANTHER PTHR10617:SF119 8 99 2.2E-19 T 26-04-2016 RGE_RS10070 672c330b7959ba275cd99e3c1675eef0 300 Pfam PF03466 LysR substrate binding domain 95 291 5.3E-22 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS10070 672c330b7959ba275cd99e3c1675eef0 300 SUPERFAMILY SSF46785 6 92 1.34E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10070 672c330b7959ba275cd99e3c1675eef0 300 Gene3D G3DSA:3.40.190.10 94 200 5.7E-11 T 26-04-2016 RGE_RS10070 672c330b7959ba275cd99e3c1675eef0 300 Gene3D G3DSA:3.40.190.10 201 262 1.9E-11 T 26-04-2016 RGE_RS10070 672c330b7959ba275cd99e3c1675eef0 300 Gene3D G3DSA:1.10.10.10 5 83 7.8E-27 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10070 672c330b7959ba275cd99e3c1675eef0 300 SUPERFAMILY SSF53850 96 290 3.02E-24 T 26-04-2016 RGE_RS10070 672c330b7959ba275cd99e3c1675eef0 300 PANTHER PTHR30126 6 290 3.3E-107 T 26-04-2016 RGE_RS10070 672c330b7959ba275cd99e3c1675eef0 300 PANTHER PTHR30126:SF23 6 290 3.3E-107 T 26-04-2016 RGE_RS10070 672c330b7959ba275cd99e3c1675eef0 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 1.1E-22 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS10070 672c330b7959ba275cd99e3c1675eef0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 6.8E-11 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS10070 672c330b7959ba275cd99e3c1675eef0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 6.8E-11 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS10070 672c330b7959ba275cd99e3c1675eef0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 6.8E-11 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14065 53c76f7afacf93830201951e83cc29d8 274 PANTHER PTHR21198:SF2 9 272 1.3E-78 T 26-04-2016 RGE_RS14065 53c76f7afacf93830201951e83cc29d8 274 SUPERFAMILY SSF53681 15 116 1.34E-28 T 26-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS14065 53c76f7afacf93830201951e83cc29d8 274 Pfam PF01177 Asp/Glu/Hydantoin racemase 16 224 8.5E-30 T 26-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS14065 53c76f7afacf93830201951e83cc29d8 274 Gene3D G3DSA:3.40.50.1860 13 181 8.6E-49 T 26-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS14065 53c76f7afacf93830201951e83cc29d8 274 TIGRFAM TIGR00067 glut_race: glutamate racemase 16 250 4.5E-58 T 26-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS14065 53c76f7afacf93830201951e83cc29d8 274 Hamap MF_00258 Glutamate racemase [murI]. 14 264 32.37 T 26-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS14065 53c76f7afacf93830201951e83cc29d8 274 SUPERFAMILY SSF53681 119 260 1.68E-31 T 26-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS14065 53c76f7afacf93830201951e83cc29d8 274 PANTHER PTHR21198 9 272 1.3E-78 T 26-04-2016 RGE_RS23375 cb54fe640a384deac9afb511b1e1b745 263 PANTHER PTHR10799:SF774 48 242 6.8E-38 T 26-04-2016 RGE_RS23375 cb54fe640a384deac9afb511b1e1b745 263 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 86 243 9.9E-42 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23375 cb54fe640a384deac9afb511b1e1b745 263 Gene3D G3DSA:3.30.70.270 87 249 1.4E-55 T 26-04-2016 RGE_RS23375 cb54fe640a384deac9afb511b1e1b745 263 SUPERFAMILY SSF55073 91 245 1.12E-48 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS23375 cb54fe640a384deac9afb511b1e1b745 263 Pfam PF00990 Diguanylate cyclase, GGDEF domain 86 241 1.6E-47 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23375 cb54fe640a384deac9afb511b1e1b745 263 PANTHER PTHR10799 48 242 6.8E-38 T 26-04-2016 RGE_RS23375 cb54fe640a384deac9afb511b1e1b745 263 SMART SM00267 74 246 3.5E-59 T 26-04-2016 IPR000160 GGDEF domain RGE_RS02100 4467ff624242cebaf5ca6051fae66f33 406 Gene3D G3DSA:3.40.50.2000 207 381 3.1E-26 T 26-04-2016 RGE_RS02100 4467ff624242cebaf5ca6051fae66f33 406 Pfam PF13579 Glycosyl transferase 4-like domain 18 194 1.3E-11 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS02100 4467ff624242cebaf5ca6051fae66f33 406 PANTHER PTHR12526 5 401 3.1E-50 T 26-04-2016 RGE_RS02100 4467ff624242cebaf5ca6051fae66f33 406 SUPERFAMILY SSF53756 7 62 4.54E-66 T 26-04-2016 RGE_RS02100 4467ff624242cebaf5ca6051fae66f33 406 SUPERFAMILY SSF53756 95 401 4.54E-66 T 26-04-2016 RGE_RS02100 4467ff624242cebaf5ca6051fae66f33 406 Pfam PF00534 Glycosyl transferases group 1 213 381 6.5E-26 T 26-04-2016 IPR001296 Glycosyl transferase, family 1 RGE_RS18995 786e0a920d157ad1cf97c2c67f608beb 449 Pfam PF00149 Calcineurin-like phosphoesterase 49 294 9.8E-11 T 26-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RGE_RS18995 786e0a920d157ad1cf97c2c67f608beb 449 Gene3D G3DSA:3.60.21.10 48 330 5.5E-31 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS18995 786e0a920d157ad1cf97c2c67f608beb 449 SUPERFAMILY SSF56300 45 333 4.0E-37 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS21820 3aa0f10a68b24a016388601daa7a63d0 141 Pfam PF04940 Sensors of blue-light using FAD 2 93 1.9E-33 T 26-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RGE_RS21820 3aa0f10a68b24a016388601daa7a63d0 141 SMART SM01034 2 94 1.3E-47 T 26-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RGE_RS21820 3aa0f10a68b24a016388601daa7a63d0 141 SUPERFAMILY SSF54975 1 133 2.62E-42 T 26-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RGE_RS07225 c03f09eb8268ea2d66449b9f485f4d66 232 PANTHER PTHR22789:SF6 1 229 3.1E-58 T 26-04-2016 RGE_RS07225 c03f09eb8268ea2d66449b9f485f4d66 232 SUPERFAMILY SSF53639 11 229 6.67E-43 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS07225 c03f09eb8268ea2d66449b9f485f4d66 232 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 14 205 7.7E-38 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS07225 c03f09eb8268ea2d66449b9f485f4d66 232 PANTHER PTHR22789 1 229 3.1E-58 T 26-04-2016 RGE_RS07225 c03f09eb8268ea2d66449b9f485f4d66 232 Gene3D G3DSA:3.40.225.10 11 229 6.2E-60 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS07225 c03f09eb8268ea2d66449b9f485f4d66 232 SMART SM01007 13 206 4.2E-40 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS01880 16f8e4b37071df6bf37dd644b8948c2c 339 ProSitePatterns PS01276 Peptidase family U32 signature. 169 187 - T 26-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS01880 16f8e4b37071df6bf37dd644b8948c2c 339 PANTHER PTHR30217 248 339 3.1E-165 T 26-04-2016 RGE_RS01880 16f8e4b37071df6bf37dd644b8948c2c 339 PANTHER PTHR30217 2 226 3.1E-165 T 26-04-2016 RGE_RS01880 16f8e4b37071df6bf37dd644b8948c2c 339 Pfam PF01136 Peptidase family U32 85 338 4.9E-65 T 26-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS01880 16f8e4b37071df6bf37dd644b8948c2c 339 PANTHER PTHR30217:SF3 248 339 3.1E-165 T 26-04-2016 RGE_RS01880 16f8e4b37071df6bf37dd644b8948c2c 339 PANTHER PTHR30217:SF3 2 226 3.1E-165 T 26-04-2016 RGE_RS01540 deaf2da78aebff11791e59e89dee36bb 128 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 70 119 2.8E-15 T 26-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 RGE_RS01540 deaf2da78aebff11791e59e89dee36bb 128 PANTHER PTHR33910:SF1 1 127 2.3E-15 T 26-04-2016 RGE_RS01540 deaf2da78aebff11791e59e89dee36bb 128 PANTHER PTHR33910 1 127 2.3E-15 T 26-04-2016 RGE_RS01540 deaf2da78aebff11791e59e89dee36bb 128 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 119 1.7E-16 T 26-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 RGE_RS01540 deaf2da78aebff11791e59e89dee36bb 128 PRINTS PR01650 Bacterial translocase SecE signature 89 109 5.7E-13 T 26-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 RGE_RS01540 deaf2da78aebff11791e59e89dee36bb 128 PRINTS PR01650 Bacterial translocase SecE signature 65 85 5.7E-13 T 26-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 RGE_RS01540 deaf2da78aebff11791e59e89dee36bb 128 PRINTS PR01650 Bacterial translocase SecE signature 44 65 5.7E-13 T 26-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 RGE_RS01540 deaf2da78aebff11791e59e89dee36bb 128 Gene3D G3DSA:1.20.5.1030 65 122 8.8E-21 T 26-04-2016 RGE_RS05650 3a710060d32bc00704282bc3fd0d68b5 300 SUPERFAMILY SSF53850 92 299 1.0E-45 T 26-04-2016 RGE_RS05650 3a710060d32bc00704282bc3fd0d68b5 300 Pfam PF03466 LysR substrate binding domain 90 296 2.6E-45 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS05650 3a710060d32bc00704282bc3fd0d68b5 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 8.2E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05650 3a710060d32bc00704282bc3fd0d68b5 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 8.2E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05650 3a710060d32bc00704282bc3fd0d68b5 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 8.2E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05650 3a710060d32bc00704282bc3fd0d68b5 300 Gene3D G3DSA:3.40.190.10 92 179 1.6E-8 T 26-04-2016 RGE_RS05650 3a710060d32bc00704282bc3fd0d68b5 300 Gene3D G3DSA:3.40.190.10 180 264 6.8E-25 T 26-04-2016 RGE_RS05650 3a710060d32bc00704282bc3fd0d68b5 300 PANTHER PTHR30537:SF21 8 296 1.1E-121 T 26-04-2016 RGE_RS05650 3a710060d32bc00704282bc3fd0d68b5 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 5.0E-18 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05650 3a710060d32bc00704282bc3fd0d68b5 300 PANTHER PTHR30537 8 296 1.1E-121 T 26-04-2016 RGE_RS05650 3a710060d32bc00704282bc3fd0d68b5 300 Gene3D G3DSA:1.10.10.10 8 88 2.0E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05650 3a710060d32bc00704282bc3fd0d68b5 300 SUPERFAMILY SSF46785 5 113 7.57E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 10 200 9.9E-101 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 Pfam PF00574 Clp protease 21 200 1.1E-90 T 26-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 PRINTS PR00127 Clp protease catalytic subunit P signature 27 42 5.7E-53 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 PRINTS PR00127 Clp protease catalytic subunit P signature 119 138 5.7E-53 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 PRINTS PR00127 Clp protease catalytic subunit P signature 98 115 5.7E-53 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 PRINTS PR00127 Clp protease catalytic subunit P signature 67 87 5.7E-53 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 PRINTS PR00127 Clp protease catalytic subunit P signature 176 195 5.7E-53 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 98 109 - T 26-04-2016 IPR018215 ClpP, Ser active site RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 Gene3D G3DSA:3.90.226.10 11 200 3.0E-92 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 11 201 45.527 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 PANTHER PTHR10381 11 201 1.4E-136 T 26-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 SUPERFAMILY SSF52096 19 200 1.04E-76 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS13605 2e9b278f1f5b98e352a7703dfb0ba1fe 202 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 120 133 - T 26-04-2016 IPR033135 ClpP, histidine active site RGE_RS14760 2bc0778f58a93cdf2ad4700bd489031a 171 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 9 164 4.1E-52 T 26-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 RGE_RS14760 2bc0778f58a93cdf2ad4700bd489031a 171 PIRSF PIRSF028301 3 171 1.9E-56 T 26-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 RGE_RS14760 2bc0778f58a93cdf2ad4700bd489031a 171 PANTHER PTHR35850:SF1 3 162 3.7E-51 T 26-04-2016 RGE_RS14760 2bc0778f58a93cdf2ad4700bd489031a 171 PANTHER PTHR35850 3 162 3.7E-51 T 26-04-2016 RGE_RS14760 2bc0778f58a93cdf2ad4700bd489031a 171 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 12 164 9.5E-53 T 26-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 RGE_RS02040 ca8ac54f5186fd26882ae2b996ef7b50 403 PANTHER PTHR12526:SF141 165 398 1.9E-18 T 26-04-2016 RGE_RS02040 ca8ac54f5186fd26882ae2b996ef7b50 403 PANTHER PTHR12526 165 398 1.9E-18 T 26-04-2016 RGE_RS02040 ca8ac54f5186fd26882ae2b996ef7b50 403 Pfam PF13692 Glycosyl transferases group 1 226 362 2.8E-28 T 26-04-2016 RGE_RS02040 ca8ac54f5186fd26882ae2b996ef7b50 403 TIGRFAM TIGR03087 stp1: sugar transferase, PEP-CTERM/EpsH1 system associated 4 395 9.3E-164 T 26-04-2016 IPR017521 Sugar transferase, PEP-CTERM, Stp1 RGE_RS02040 ca8ac54f5186fd26882ae2b996ef7b50 403 SUPERFAMILY SSF53756 3 393 1.32E-37 T 26-04-2016 RGE_RS02040 ca8ac54f5186fd26882ae2b996ef7b50 403 Gene3D G3DSA:3.40.50.2000 205 376 2.3E-4 T 26-04-2016 RGE_RS05800 02b5d3ade23694f117c6e426e4e3f9a6 610 Pfam PF01590 GAF domain 94 203 2.2E-8 T 26-04-2016 IPR003018 GAF domain GO:0005515 RGE_RS05800 02b5d3ade23694f117c6e426e4e3f9a6 610 Pfam PF00158 Sigma-54 interaction domain 319 484 7.4E-54 T 26-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RGE_RS05800 02b5d3ade23694f117c6e426e4e3f9a6 610 PANTHER PTHR32071 317 605 3.3E-98 T 26-04-2016 RGE_RS05800 02b5d3ade23694f117c6e426e4e3f9a6 610 Gene3D G3DSA:3.40.50.300 317 490 4.2E-43 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05800 02b5d3ade23694f117c6e426e4e3f9a6 610 Pfam PF02954 Bacterial regulatory protein, Fis family 580 605 1.4E-6 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS05800 02b5d3ade23694f117c6e426e4e3f9a6 610 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 404 419 - T 26-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RGE_RS05800 02b5d3ade23694f117c6e426e4e3f9a6 610 Gene3D G3DSA:1.10.10.60 561 605 3.3E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS05800 02b5d3ade23694f117c6e426e4e3f9a6 610 SMART SM00382 338 481 8.6E-9 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS05800 02b5d3ade23694f117c6e426e4e3f9a6 610 SUPERFAMILY SSF52540 318 555 2.21E-55 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05800 02b5d3ade23694f117c6e426e4e3f9a6 610 SUPERFAMILY SSF46689 562 605 4.48E-6 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS05800 02b5d3ade23694f117c6e426e4e3f9a6 610 Gene3D G3DSA:1.10.8.60 493 555 5.1E-12 T 26-04-2016 RGE_RS07455 a23f91f4a0ce6bc1909c2a30a547620c 240 Gene3D G3DSA:3.40.1280.10 3 162 3.3E-29 T 26-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RGE_RS07455 a23f91f4a0ce6bc1909c2a30a547620c 240 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 6 234 1.1E-53 T 26-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RGE_RS07455 a23f91f4a0ce6bc1909c2a30a547620c 240 PIRSF PIRSF004808 1 239 2.7E-62 T 26-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RGE_RS07455 a23f91f4a0ce6bc1909c2a30a547620c 240 Pfam PF00588 SpoU rRNA Methylase family 5 156 5.3E-33 T 26-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RGE_RS07455 a23f91f4a0ce6bc1909c2a30a547620c 240 PANTHER PTHR12029 2 183 8.1E-27 T 26-04-2016 RGE_RS07455 a23f91f4a0ce6bc1909c2a30a547620c 240 SUPERFAMILY SSF75217 4 163 5.56E-33 T 26-04-2016 IPR029028 Alpha/beta knot methyltransferases RGE_RS13025 eeaed148a77c9c53b3d17fad59c0243f 340 PANTHER PTHR40690:SF1 52 340 1.2E-67 T 26-04-2016 RGE_RS13025 eeaed148a77c9c53b3d17fad59c0243f 340 SUPERFAMILY SSF52540 2 332 4.51E-109 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13025 eeaed148a77c9c53b3d17fad59c0243f 340 Pfam PF07755 Protein of unknown function (DUF1611) 38 327 1.9E-104 T 26-04-2016 IPR011669 Protein of unknown function DUF1611 RGE_RS13025 eeaed148a77c9c53b3d17fad59c0243f 340 PANTHER PTHR40690 52 340 1.2E-67 T 26-04-2016 RGE_RS13025 eeaed148a77c9c53b3d17fad59c0243f 340 Gene3D G3DSA:3.40.50.720 1 126 3.4E-45 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS13025 eeaed148a77c9c53b3d17fad59c0243f 340 PIRSF PIRSF026760 3 337 3.3E-97 T 26-04-2016 IPR011669 Protein of unknown function DUF1611 RGE_RS13025 eeaed148a77c9c53b3d17fad59c0243f 340 Gene3D G3DSA:3.40.50.300 127 331 3.9E-74 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13155 43cab295e15698dde5833c2b53b1d652 318 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 3 174 1.5E-16 T 26-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RGE_RS13155 43cab295e15698dde5833c2b53b1d652 318 Gene3D G3DSA:2.60.200.20 210 266 6.8E-13 T 26-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RGE_RS13155 43cab295e15698dde5833c2b53b1d652 318 SUPERFAMILY SSF49879 181 290 6.31E-16 T 26-04-2016 IPR008984 SMAD/FHA domain GO:0005515 RGE_RS13155 43cab295e15698dde5833c2b53b1d652 318 Pfam PF00498 FHA domain 219 264 5.6E-10 T 26-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RGE_RS13155 43cab295e15698dde5833c2b53b1d652 318 PANTHER PTHR11920 1 204 3.0E-13 T 26-04-2016 RGE_RS13155 43cab295e15698dde5833c2b53b1d652 318 Gene3D G3DSA:3.30.70.1230 5 182 2.2E-23 T 26-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RGE_RS13155 43cab295e15698dde5833c2b53b1d652 318 SUPERFAMILY SSF55073 5 182 1.4E-37 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS13155 43cab295e15698dde5833c2b53b1d652 318 PANTHER PTHR11920:SF341 1 204 3.0E-13 T 26-04-2016 RGE_RS13155 43cab295e15698dde5833c2b53b1d652 318 SMART SM00240 218 267 1.5E-5 T 26-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RGE_RS05890 78022972bdede867cd17dd11bce21a40 239 PANTHER PTHR33121:SF15 10 232 6.5E-66 T 26-04-2016 RGE_RS05890 78022972bdede867cd17dd11bce21a40 239 PANTHER PTHR33121 10 232 6.5E-66 T 26-04-2016 RGE_RS05890 78022972bdede867cd17dd11bce21a40 239 SUPERFAMILY SSF141868 10 226 1.22E-54 T 26-04-2016 IPR001633 EAL domain RGE_RS05890 78022972bdede867cd17dd11bce21a40 239 SMART SM00052 4 231 6.1E-27 T 26-04-2016 IPR001633 EAL domain RGE_RS05890 78022972bdede867cd17dd11bce21a40 239 Gene3D G3DSA:3.20.20.450 10 226 2.9E-47 T 26-04-2016 IPR001633 EAL domain RGE_RS05890 78022972bdede867cd17dd11bce21a40 239 Pfam PF00563 EAL domain 10 226 4.0E-49 T 26-04-2016 IPR001633 EAL domain RGE_RS05765 961dd2b55db1db84847f20690f762710 113 Pfam PF03960 ArsC family 4 110 4.9E-10 T 26-04-2016 IPR006660 Arsenate reductase-like RGE_RS05765 961dd2b55db1db84847f20690f762710 113 Gene3D G3DSA:3.40.30.10 1 111 1.8E-37 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS05765 961dd2b55db1db84847f20690f762710 113 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 107 9.9E-26 T 26-04-2016 IPR006504 Transcriptional regulator Spx/MgsR RGE_RS05765 961dd2b55db1db84847f20690f762710 113 SUPERFAMILY SSF52833 1 111 1.4E-29 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS05765 961dd2b55db1db84847f20690f762710 113 PANTHER PTHR30041 3 110 6.2E-28 T 26-04-2016 RGE_RS05765 961dd2b55db1db84847f20690f762710 113 PANTHER PTHR30041:SF3 3 110 6.2E-28 T 26-04-2016 RGE_RS20385 90d22f2d316a9941df34bfef3ac93eed 292 Pfam PF00510 Cytochrome c oxidase subunit III 11 118 2.3E-11 T 26-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RGE_RS20385 90d22f2d316a9941df34bfef3ac93eed 292 Pfam PF00510 Cytochrome c oxidase subunit III 132 291 6.2E-44 T 26-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RGE_RS20385 90d22f2d316a9941df34bfef3ac93eed 292 PANTHER PTHR11403 2 292 1.8E-92 T 26-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 RGE_RS20385 90d22f2d316a9941df34bfef3ac93eed 292 SUPERFAMILY SSF81452 9 292 3.03E-74 T 26-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RGE_RS20385 90d22f2d316a9941df34bfef3ac93eed 292 Gene3D G3DSA:1.10.287.70 9 73 6.3E-13 T 26-04-2016 RGE_RS20385 90d22f2d316a9941df34bfef3ac93eed 292 PANTHER PTHR11403:SF0 2 292 1.8E-92 T 26-04-2016 RGE_RS20385 90d22f2d316a9941df34bfef3ac93eed 292 Gene3D G3DSA:1.20.120.80 77 292 2.0E-62 T 26-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 SUPERFAMILY SSF82866 805 1027 6.54E-44 T 26-04-2016 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 SUPERFAMILY SSF82714 721 806 2.09E-18 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 Gene3D G3DSA:3.30.70.1430 38 139 5.8E-33 T 26-04-2016 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 SUPERFAMILY SSF82693 135 182 1.92E-25 T 26-04-2016 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 SUPERFAMILY SSF82693 274 330 1.92E-25 T 26-04-2016 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 PANTHER PTHR32063 1 1036 0.0 T 26-04-2016 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1039 0.0 T 26-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 Pfam PF00873 AcrB/AcrD/AcrF family 1 1025 0.0 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 PANTHER PTHR32063:SF13 1 1036 0.0 T 26-04-2016 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 SUPERFAMILY SSF82714 182 272 2.35E-23 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 4.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 4.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 4.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 4.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 4.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 4.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 4.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 4.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 4.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 Gene3D G3DSA:1.10.3850.10 280 498 3.6E-56 T 26-04-2016 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 Gene3D G3DSA:1.10.3850.10 814 1026 7.6E-55 T 26-04-2016 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 SUPERFAMILY SSF82693 38 131 1.44E-25 T 26-04-2016 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 Gene3D G3DSA:3.30.70.1430 568 669 8.8E-37 T 26-04-2016 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 SUPERFAMILY SSF82866 298 497 1.15E-47 T 26-04-2016 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 Gene3D G3DSA:3.30.2090.10 181 273 2.3E-27 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 SUPERFAMILY SSF82693 566 669 5.49E-34 T 26-04-2016 RGE_RS15690 a868085f072fd79cb8e830e06aca395d 1055 Gene3D G3DSA:3.30.2090.10 721 807 4.5E-21 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS03800 ea0cf9efba67579ece9c00c660bdcf00 277 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 252 274 5.4E-11 T 26-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RGE_RS03800 ea0cf9efba67579ece9c00c660bdcf00 277 SMART SM00382 51 252 8.3E-6 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS03800 ea0cf9efba67579ece9c00c660bdcf00 277 Gene3D G3DSA:3.40.50.300 24 272 2.8E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03800 ea0cf9efba67579ece9c00c660bdcf00 277 PANTHER PTHR24220 149 274 4.6E-127 T 26-04-2016 RGE_RS03800 ea0cf9efba67579ece9c00c660bdcf00 277 PANTHER PTHR24220:SF519 28 133 4.6E-127 T 26-04-2016 RGE_RS03800 ea0cf9efba67579ece9c00c660bdcf00 277 Pfam PF00005 ABC transporter 42 203 1.9E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS03800 ea0cf9efba67579ece9c00c660bdcf00 277 PANTHER PTHR24220 28 133 4.6E-127 T 26-04-2016 RGE_RS03800 ea0cf9efba67579ece9c00c660bdcf00 277 PANTHER PTHR24220:SF519 149 274 4.6E-127 T 26-04-2016 RGE_RS03800 ea0cf9efba67579ece9c00c660bdcf00 277 SUPERFAMILY SSF52540 25 274 4.05E-62 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19805 25aca8688fadc437a676f78beab9b581 372 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 246 332 4.8E-7 T 26-04-2016 IPR023885 4Fe4S-binding SPASM domain RGE_RS19805 25aca8688fadc437a676f78beab9b581 372 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 6 360 1.5E-149 T 26-04-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 RGE_RS19805 25aca8688fadc437a676f78beab9b581 372 SUPERFAMILY SSF102114 8 314 7.06E-71 T 26-04-2016 RGE_RS19805 25aca8688fadc437a676f78beab9b581 372 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 372 180.764 T 26-04-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 RGE_RS19805 25aca8688fadc437a676f78beab9b581 372 Pfam PF04055 Radical SAM superfamily 16 169 9.0E-24 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS19805 25aca8688fadc437a676f78beab9b581 372 Pfam PF13186 Iron-sulfur cluster-binding domain 239 305 1.7E-7 T 26-04-2016 IPR023885 4Fe4S-binding SPASM domain RGE_RS19805 25aca8688fadc437a676f78beab9b581 372 SMART SM00729 10 212 0.0016 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS19805 25aca8688fadc437a676f78beab9b581 372 PIRSF PIRSF037420 2 352 8.3E-106 T 26-04-2016 IPR017200 Coenzyme PQQ synthesis protein E UniPathway: UPA00539 RGE_RS19805 25aca8688fadc437a676f78beab9b581 372 Gene3D G3DSA:3.20.20.70 4 321 3.6E-65 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS19805 25aca8688fadc437a676f78beab9b581 372 PANTHER PTHR11228:SF32 3 342 4.6E-92 T 26-04-2016 RGE_RS19805 25aca8688fadc437a676f78beab9b581 372 PANTHER PTHR11228 3 342 4.6E-92 T 26-04-2016 RGE_RS19805 25aca8688fadc437a676f78beab9b581 372 Pfam PF13394 4Fe-4S single cluster domain 19 77 3.9E-5 T 26-04-2016 RGE_RS03765 705e47fba0ae5fd58f9d72767cfcb49a 317 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 44 314 5.2E-66 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS03765 705e47fba0ae5fd58f9d72767cfcb49a 317 PIRSF PIRSF017082 5 317 9.7E-64 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS03765 705e47fba0ae5fd58f9d72767cfcb49a 317 PANTHER PTHR30349 7 271 1.9E-55 T 26-04-2016 RGE_RS03765 705e47fba0ae5fd58f9d72767cfcb49a 317 SUPERFAMILY SSF53850 109 279 6.04E-15 T 26-04-2016 RGE_RS03765 705e47fba0ae5fd58f9d72767cfcb49a 317 PANTHER PTHR30349:SF32 7 271 1.9E-55 T 26-04-2016 RGE_RS03650 cca7fbd5dbf7323895bdcb0e0eb608dc 405 PANTHER PTHR13697:SF19 90 380 2.6E-56 T 26-04-2016 RGE_RS03650 cca7fbd5dbf7323895bdcb0e0eb608dc 405 PIRSF PIRSF036483 2 403 8.3E-128 T 26-04-2016 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042|UniPathway: UPA00109 RGE_RS03650 cca7fbd5dbf7323895bdcb0e0eb608dc 405 Gene3D G3DSA:3.40.50.450 5 229 2.4E-53 T 26-04-2016 RGE_RS03650 cca7fbd5dbf7323895bdcb0e0eb608dc 405 Pfam PF00365 Phosphofructokinase 5 322 3.5E-49 T 26-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS03650 cca7fbd5dbf7323895bdcb0e0eb608dc 405 Hamap MF_01978 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 3 396 39.643 T 26-04-2016 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042|UniPathway: UPA00109 RGE_RS03650 cca7fbd5dbf7323895bdcb0e0eb608dc 405 PANTHER PTHR13697 90 380 2.6E-56 T 26-04-2016 RGE_RS03650 cca7fbd5dbf7323895bdcb0e0eb608dc 405 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 8 27 8.5E-9 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS03650 cca7fbd5dbf7323895bdcb0e0eb608dc 405 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 98 114 8.5E-9 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS03650 cca7fbd5dbf7323895bdcb0e0eb608dc 405 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 227 239 8.5E-9 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS03650 cca7fbd5dbf7323895bdcb0e0eb608dc 405 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 131 148 8.5E-9 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS03650 cca7fbd5dbf7323895bdcb0e0eb608dc 405 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 169 185 8.5E-9 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS03650 cca7fbd5dbf7323895bdcb0e0eb608dc 405 SUPERFAMILY SSF53784 5 401 7.85E-95 T 26-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 Gene3D G3DSA:1.25.40.10 380 457 3.5E-4 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 Gene3D G3DSA:1.25.40.10 533 749 3.5E-4 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 SUPERFAMILY SSF52540 131 234 5.33E-7 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 SUPERFAMILY SSF52540 22 87 5.33E-7 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 SMART SM00421 806 863 1.3E-21 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 Gene3D G3DSA:1.10.10.10 808 863 6.7E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 SUPERFAMILY SSF46894 800 863 5.78E-17 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 823 839 1.0E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 839 851 1.0E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 809 823 1.0E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 Pfam PF13401 AAA domain 37 152 8.6E-7 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 ProSitePatterns PS00622 LuxR-type HTH domain signature. 823 850 - T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS16840 0146d75a84350020e2f6c6b5623ae25e 868 Pfam PF00196 Bacterial regulatory proteins, luxR family 809 862 3.4E-17 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS16625 28fb8d0c09942b9e98cb14742ae3630b 176 SUPERFAMILY SSF50341 23 167 5.75E-37 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS16625 28fb8d0c09942b9e98cb14742ae3630b 176 SMART SM00260 22 163 1.5E-39 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS16625 28fb8d0c09942b9e98cb14742ae3630b 176 Pfam PF01584 CheW-like domain 26 165 1.2E-35 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS16625 28fb8d0c09942b9e98cb14742ae3630b 176 PANTHER PTHR22617 25 176 1.7E-46 T 26-04-2016 RGE_RS16625 28fb8d0c09942b9e98cb14742ae3630b 176 Gene3D G3DSA:2.40.50.180 64 101 1.2E-10 T 26-04-2016 RGE_RS16625 28fb8d0c09942b9e98cb14742ae3630b 176 Gene3D G3DSA:2.30.30.40 102 142 5.0E-6 T 26-04-2016 RGE_RS19210 b116984d853af234af31c4e4f46f6606 120 SUPERFAMILY SSF52172 1 120 5.83E-37 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS19210 b116984d853af234af31c4e4f46f6606 120 Gene3D G3DSA:3.40.50.2300 2 120 1.0E-37 T 26-04-2016 RGE_RS19210 b116984d853af234af31c4e4f46f6606 120 PANTHER PTHR26402 2 120 3.9E-42 T 26-04-2016 RGE_RS19210 b116984d853af234af31c4e4f46f6606 120 SMART SM00448 2 115 4.1E-38 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19210 b116984d853af234af31c4e4f46f6606 120 Pfam PF00072 Response regulator receiver domain 4 115 3.4E-29 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS22800 1b46966e45cdb8958afb9f039e22bc44 260 Gene3D G3DSA:3.60.10.10 3 257 6.6E-84 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS22800 1b46966e45cdb8958afb9f039e22bc44 260 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 4 254 5.1E-65 T 26-04-2016 RGE_RS22800 1b46966e45cdb8958afb9f039e22bc44 260 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 4 256 1.2E-70 T 26-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RGE_RS22800 1b46966e45cdb8958afb9f039e22bc44 260 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 6 249 1.4E-21 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS22800 1b46966e45cdb8958afb9f039e22bc44 260 PANTHER PTHR22748 3 257 1.8E-88 T 26-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RGE_RS22800 1b46966e45cdb8958afb9f039e22bc44 260 SUPERFAMILY SSF56219 3 257 2.88E-69 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS14475 985e6e74424006348ab3f61290879c2f 272 SUPERFAMILY SSF81296 166 269 6.02E-20 T 26-04-2016 IPR014756 Immunoglobulin E-set RGE_RS14475 985e6e74424006348ab3f61290879c2f 272 TIGRFAM TIGR04557 fuse_rel_SoxYZ: quinoprotein dehydrogenase-associated SoxYZ-like carrier 36 263 9.0E-76 T 26-04-2016 IPR030831 Quinoprotein dehydrogenase-associated SoxYZ-like carrier RGE_RS14475 985e6e74424006348ab3f61290879c2f 272 Pfam PF08770 Sulphur oxidation protein SoxZ 177 264 1.9E-20 T 26-04-2016 IPR014880 Sulphur oxidation protein SoxZ RGE_RS14475 985e6e74424006348ab3f61290879c2f 272 Pfam PF13501 Sulfur oxidation protein SoxY 41 151 1.6E-34 T 26-04-2016 IPR032711 Ig-like SoxY domain RGE_RS14475 985e6e74424006348ab3f61290879c2f 272 Gene3D G3DSA:2.60.40.10 166 270 5.3E-23 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 Gene3D G3DSA:3.40.50.40 217 311 8.7E-27 T 26-04-2016 IPR027473 L-asparaginase, C-terminal domain RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 SMART SM00870 7 313 1.7E-94 T 26-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 PIRSF PIRSF500176 4 312 1.2E-62 T 26-04-2016 RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 SUPERFAMILY SSF53774 7 310 6.02E-78 T 26-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 PIRSF PIRSF001220 2 313 8.7E-65 T 26-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 Gene3D G3DSA:3.40.50.1170 6 191 7.0E-52 T 26-04-2016 IPR027474 L-asparaginase, N-terminal RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 88 98 - T 26-04-2016 IPR027475 Asparaginase/glutaminase, active site 2 RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 PRINTS PR00139 Asparaginase/glutaminase family signature 87 105 2.2E-20 T 26-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 PRINTS PR00139 Asparaginase/glutaminase family signature 8 19 2.2E-20 T 26-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 PRINTS PR00139 Asparaginase/glutaminase family signature 264 282 2.2E-20 T 26-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 Pfam PF00710 Asparaginase, N-terminal 8 190 1.1E-48 T 26-04-2016 IPR027474 L-asparaginase, N-terminal RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 PANTHER PTHR11707 8 309 3.2E-37 T 26-04-2016 RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 10 18 - T 26-04-2016 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 RGE_RS11685 c658d5d8dd46572aea5cf14f90cfd82d 314 PANTHER PTHR11707:SF29 8 309 3.2E-37 T 26-04-2016 RGE_RS07355 6283d07542acc7b5673766687c88d40e 213 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 25 208 1.3E-21 T 26-04-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 RGE_RS07355 6283d07542acc7b5673766687c88d40e 213 PANTHER PTHR36122 16 213 2.0E-42 T 26-04-2016 RGE_RS07355 6283d07542acc7b5673766687c88d40e 213 PANTHER PTHR36122:SF1 16 213 2.0E-42 T 26-04-2016 RGE_RS07355 6283d07542acc7b5673766687c88d40e 213 Pfam PF04973 Nicotinamide mononucleotide transporter 25 204 2.3E-48 T 26-04-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 26-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 SUPERFAMILY SSF47446 328 431 2.62E-33 T 26-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 SMART SM00963 1 86 4.3E-31 T 26-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 PANTHER PTHR11564:SF7 1 434 2.4E-228 T 26-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 Pfam PF02978 Signal peptide binding domain 328 427 5.7E-31 T 26-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 Gene3D G3DSA:1.20.120.140 4 89 1.1E-31 T 26-04-2016 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 SMART SM00382 99 246 2.7E-9 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 PANTHER PTHR11564 1 434 2.4E-228 T 26-04-2016 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 Pfam PF00448 SRP54-type protein, GTPase domain 101 295 6.0E-68 T 26-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 449 32.345 T 26-04-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 Gene3D G3DSA:3.40.50.300 94 297 6.5E-72 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 SMART SM00962 100 296 1.5E-104 T 26-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 5.6E-20 T 26-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 Gene3D G3DSA:1.10.260.30 328 431 1.2E-36 T 26-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 TIGRFAM TIGR00959 ffh: signal recognition particle protein 4 429 7.4E-167 T 26-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RGE_RS20655 a3a707d0608f1551c9c6a48e60928047 455 SUPERFAMILY SSF52540 42 355 4.96E-49 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07615 7b829486cbb3e680c3c58f73cb41f09c 428 Gene3D G3DSA:3.40.50.2300 166 314 4.3E-22 T 26-04-2016 RGE_RS07615 7b829486cbb3e680c3c58f73cb41f09c 428 Pfam PF13458 Periplasmic binding protein 31 385 2.2E-66 T 26-04-2016 IPR028081 Leucine-binding protein domain RGE_RS07615 7b829486cbb3e680c3c58f73cb41f09c 428 SUPERFAMILY SSF53822 31 387 2.19E-67 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS07615 7b829486cbb3e680c3c58f73cb41f09c 428 PANTHER PTHR30483 8 427 7.8E-41 T 26-04-2016 RGE_RS07615 7b829486cbb3e680c3c58f73cb41f09c 428 Gene3D G3DSA:3.40.50.2300 315 377 1.0E-32 T 26-04-2016 RGE_RS07615 7b829486cbb3e680c3c58f73cb41f09c 428 Gene3D G3DSA:3.40.50.2300 28 165 1.0E-32 T 26-04-2016 RGE_RS21855 276a8d1474c2abdc8bda03c9aeb4f158 162 PANTHER PTHR22884 15 147 4.0E-33 T 26-04-2016 RGE_RS21855 276a8d1474c2abdc8bda03c9aeb4f158 162 SMART SM00508 141 157 0.003 T 26-04-2016 IPR003616 Post-SET domain KEGG: 00310+2.1.1.43 RGE_RS21855 276a8d1474c2abdc8bda03c9aeb4f158 162 Gene3D G3DSA:2.170.270.10 11 156 1.5E-45 T 26-04-2016 RGE_RS21855 276a8d1474c2abdc8bda03c9aeb4f158 162 SMART SM00317 15 134 3.1E-31 T 26-04-2016 IPR001214 SET domain GO:0005515 RGE_RS21855 276a8d1474c2abdc8bda03c9aeb4f158 162 Pfam PF00856 SET domain 26 128 9.0E-18 T 26-04-2016 IPR001214 SET domain GO:0005515 RGE_RS21855 276a8d1474c2abdc8bda03c9aeb4f158 162 PANTHER PTHR22884:SF336 15 147 4.0E-33 T 26-04-2016 RGE_RS21855 276a8d1474c2abdc8bda03c9aeb4f158 162 SUPERFAMILY SSF82199 11 154 1.16E-44 T 26-04-2016 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 SUPERFAMILY SSF56053 83 177 2.09E-34 T 26-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.8E-31 T 26-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.8E-31 T 26-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.8E-31 T 26-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 PIRSF PIRSF002162 1 177 6.8E-47 T 26-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 9.6E-71 T 26-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 PANTHER PTHR11655:SF14 1 176 3.2E-80 T 26-04-2016 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 35.625 T 26-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 26-04-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 Pfam PF00347 Ribosomal protein L6 11 80 1.8E-14 T 26-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 Pfam PF00347 Ribosomal protein L6 90 164 2.5E-19 T 26-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 SUPERFAMILY SSF56053 1 81 5.5E-22 T 26-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 PANTHER PTHR11655 1 176 3.2E-80 T 26-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 Gene3D G3DSA:3.90.930.12 2 81 3.5E-26 T 26-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS01690 260ae9ca45c464bd91978133642ade3d 177 Gene3D G3DSA:3.90.930.12 83 177 3.1E-39 T 26-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS06735 0962f418e32aabfe2cf90573a8a5530d 316 Gene3D G3DSA:3.40.1190.20 19 309 9.1E-65 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS06735 0962f418e32aabfe2cf90573a8a5530d 316 PANTHER PTHR10584 1 309 2.6E-116 T 26-04-2016 RGE_RS06735 0962f418e32aabfe2cf90573a8a5530d 316 SUPERFAMILY SSF53613 19 314 5.14E-58 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS06735 0962f418e32aabfe2cf90573a8a5530d 316 PANTHER PTHR10584:SF159 1 309 2.6E-116 T 26-04-2016 RGE_RS06735 0962f418e32aabfe2cf90573a8a5530d 316 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 58 81 - T 26-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RGE_RS06735 0962f418e32aabfe2cf90573a8a5530d 316 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 15 315 2.0E-118 T 26-04-2016 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 RGE_RS06735 0962f418e32aabfe2cf90573a8a5530d 316 Pfam PF00294 pfkB family carbohydrate kinase 19 308 1.8E-41 T 26-04-2016 IPR011611 Carbohydrate kinase PfkB RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 PANTHER PTHR15184:SF34 19 419 2.2E-180 T 26-04-2016 RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 SMART SM00382 171 338 8.2E-7 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 Gene3D G3DSA:2.40.50.140 49 117 8.9E-33 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 Gene3D G3DSA:3.40.50.300 131 419 4.1E-103 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 SMART SM00959 5 47 1.9E-15 T 26-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 2.0E-14 T 26-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 2.5E-30 T 26-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 420 240.595 T 26-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 SUPERFAMILY SSF68912 1 46 3.02E-11 T 26-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 Gene3D G3DSA:1.10.720.10 1 47 5.8E-20 T 26-04-2016 RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 SUPERFAMILY SSF50249 49 125 1.09E-27 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 418 2.6E-206 T 26-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 161 364 8.2E-22 T 26-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 PANTHER PTHR15184 19 419 2.2E-180 T 26-04-2016 RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 SUPERFAMILY SSF52540 91 372 3.58E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16115 1db59642b7da82a1a36e88f9a2721939 421 SMART SM00357 52 118 2.8E-16 T 26-04-2016 IPR011129 Cold shock protein GO:0003676 RGE_RS21145 9076c646d525e5fccf9689e99ce48627 189 Gene3D G3DSA:3.40.30.10 1 185 4.2E-47 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS21145 9076c646d525e5fccf9689e99ce48627 189 PIRSF PIRSF006386 1 189 4.0E-40 T 26-04-2016 IPR014440 HCCA isomerase/glutathione S-transferase kappa RGE_RS21145 9076c646d525e5fccf9689e99ce48627 189 PANTHER PTHR13887 8 184 3.7E-27 T 26-04-2016 RGE_RS21145 9076c646d525e5fccf9689e99ce48627 189 SUPERFAMILY SSF52833 4 186 8.09E-35 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS21145 9076c646d525e5fccf9689e99ce48627 189 Pfam PF01323 DSBA-like thioredoxin domain 5 184 3.4E-27 T 26-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RGE_RS21065 28e61dc7f2cb6e3c33945a8085a7ee27 227 PANTHER PTHR11649 29 222 2.1E-36 T 26-04-2016 RGE_RS21065 28e61dc7f2cb6e3c33945a8085a7ee27 227 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 23 218 9.2E-58 T 26-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 RGE_RS21065 28e61dc7f2cb6e3c33945a8085a7ee27 227 SUPERFAMILY SSF52540 24 221 5.52E-29 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21065 28e61dc7f2cb6e3c33945a8085a7ee27 227 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 28 222 24.337 T 26-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 RGE_RS21065 28e61dc7f2cb6e3c33945a8085a7ee27 227 Gene3D G3DSA:3.40.50.300 23 219 3.1E-34 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21065 28e61dc7f2cb6e3c33945a8085a7ee27 227 Pfam PF01926 50S ribosome-binding GTPase 42 151 6.9E-18 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS07825 6c4c0b3f719d073319d85602d7c79c5a 292 Gene3D G3DSA:1.10.3720.10 60 285 6.4E-52 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS07825 6c4c0b3f719d073319d85602d7c79c5a 292 PANTHER PTHR30193:SF29 10 292 3.3E-121 T 26-04-2016 RGE_RS07825 6c4c0b3f719d073319d85602d7c79c5a 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 285 7.4E-13 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS07825 6c4c0b3f719d073319d85602d7c79c5a 292 SUPERFAMILY SSF161098 54 280 3.4E-49 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS07825 6c4c0b3f719d073319d85602d7c79c5a 292 PANTHER PTHR30193 10 292 3.3E-121 T 26-04-2016 RGE_RS15945 c5217c505304da7d891724f4e02ac03c 256 PANTHER PTHR11935 1 256 1.4E-80 T 26-04-2016 RGE_RS15945 c5217c505304da7d891724f4e02ac03c 256 Pfam PF00753 Metallo-beta-lactamase superfamily 14 168 3.6E-15 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS15945 c5217c505304da7d891724f4e02ac03c 256 Gene3D G3DSA:3.60.15.10 4 254 4.9E-83 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS15945 c5217c505304da7d891724f4e02ac03c 256 PANTHER PTHR11935:SF7 1 256 1.4E-80 T 26-04-2016 RGE_RS15945 c5217c505304da7d891724f4e02ac03c 256 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 255 42.307 T 26-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 RGE_RS15945 c5217c505304da7d891724f4e02ac03c 256 PIRSF PIRSF005457 1 255 8.9E-96 T 26-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 RGE_RS15945 c5217c505304da7d891724f4e02ac03c 256 SMART SM00849 11 168 1.4E-35 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS15945 c5217c505304da7d891724f4e02ac03c 256 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 255 6.2E-97 T 26-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 RGE_RS15945 c5217c505304da7d891724f4e02ac03c 256 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 169 255 1.6E-24 T 26-04-2016 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 RGE_RS15945 c5217c505304da7d891724f4e02ac03c 256 SUPERFAMILY SSF56281 1 254 8.67E-68 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 PANTHER PTHR32089:SF63 156 513 1.1E-148 T 26-04-2016 RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 SMART SM00304 209 262 8.0E-12 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 SUPERFAMILY SSF58104 229 511 9.55E-73 T 26-04-2016 RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 SMART SM00283 263 510 7.1E-89 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 PANTHER PTHR32089 156 513 1.1E-148 T 26-04-2016 RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 361 388 2.1E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 390 419 2.1E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 284 313 2.1E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 438 467 2.1E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 173 1.7E-7 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 Gene3D G3DSA:1.10.287.950 278 482 3.6E-59 T 26-04-2016 RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 Pfam PF00672 HAMP domain 192 258 2.3E-14 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS19225 25df36a1fe55f7bcdf10e770800b1ce6 569 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 317 509 3.7E-61 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS17845 6d8ac52b730fc65132896071d780d963 432 SUPERFAMILY SSF100879 275 379 2.55E-26 T 26-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS17845 6d8ac52b730fc65132896071d780d963 432 Hamap MF_01113 DNA polymerase IV [dinB]. 5 407 33.21 T 26-04-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS17845 6d8ac52b730fc65132896071d780d963 432 PANTHER PTHR11076 2 40 1.5E-108 T 26-04-2016 RGE_RS17845 6d8ac52b730fc65132896071d780d963 432 PANTHER PTHR11076 63 385 1.5E-108 T 26-04-2016 RGE_RS17845 6d8ac52b730fc65132896071d780d963 432 Pfam PF11799 impB/mucB/samB family C-terminal domain 270 381 2.0E-17 T 26-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS17845 6d8ac52b730fc65132896071d780d963 432 Gene3D G3DSA:1.10.150.20 199 270 3.9E-21 T 26-04-2016 RGE_RS17845 6d8ac52b730fc65132896071d780d963 432 Gene3D G3DSA:3.30.70.270 90 196 2.0E-26 T 26-04-2016 RGE_RS17845 6d8ac52b730fc65132896071d780d963 432 Pfam PF11798 IMS family HHH motif 200 229 3.8E-7 T 26-04-2016 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS17845 6d8ac52b730fc65132896071d780d963 432 SUPERFAMILY SSF56672 5 267 1.42E-77 T 26-04-2016 RGE_RS17845 6d8ac52b730fc65132896071d780d963 432 Gene3D G3DSA:3.30.1490.100 275 380 1.9E-29 T 26-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS17845 6d8ac52b730fc65132896071d780d963 432 Pfam PF00817 impB/mucB/samB family 11 186 1.7E-43 T 26-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 PANTHER PTHR21090 17 483 2.6E-149 T 26-04-2016 RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 SUPERFAMILY SSF52540 454 671 6.83E-38 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 Gene3D G3DSA:3.40.50.300 454 669 3.2E-67 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 TIGRFAM TIGR00017 cmk: cytidylate kinase 454 665 4.2E-66 T 26-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 Hamap MF_00238 Cytidylate kinase [cmk]. 454 672 31.535 T 26-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 Gene3D G3DSA:3.65.10.10 250 442 4.1E-65 T 26-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 17 445 2.1E-125 T 26-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 SUPERFAMILY SSF55205 11 445 7.59E-115 T 26-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 16 442 4.6E-117 T 26-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 Pfam PF02224 Cytidylate kinase 456 667 7.9E-62 T 26-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 Gene3D G3DSA:3.65.10.10 25 249 7.6E-63 T 26-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 ProSitePatterns PS00885 EPSP synthase signature 2. 355 373 - T 26-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 ProSitePatterns PS00104 EPSP synthase signature 1. 91 105 - T 26-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS06810 85f3913202fc234ba76d046ffa25f866 678 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 13 448 32.596 T 26-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS03995 ad3fa1234905b0a9582c53b8f5e8859e 107 PANTHER PTHR16821 1 107 2.9E-21 T 26-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RGE_RS03995 ad3fa1234905b0a9582c53b8f5e8859e 107 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 107 1.7E-35 T 26-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RGE_RS03995 ad3fa1234905b0a9582c53b8f5e8859e 107 Pfam PF01491 Frataxin-like domain 1 104 2.1E-26 T 26-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RGE_RS03995 ad3fa1234905b0a9582c53b8f5e8859e 107 SUPERFAMILY SSF55387 1 105 1.33E-32 T 26-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RGE_RS03995 ad3fa1234905b0a9582c53b8f5e8859e 107 SMART SM01219 1 107 5.6E-43 T 26-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RGE_RS03995 ad3fa1234905b0a9582c53b8f5e8859e 107 Gene3D G3DSA:3.30.920.10 1 107 4.9E-29 T 26-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RGE_RS03995 ad3fa1234905b0a9582c53b8f5e8859e 107 ProSitePatterns PS01344 Frataxin family signature. 52 66 - T 26-04-2016 IPR020895 Frataxin conserved site RGE_RS03995 ad3fa1234905b0a9582c53b8f5e8859e 107 Hamap MF_00142 Protein CyaY [cyaY]. 1 107 25.377 T 26-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 160 173 - T 26-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 Gene3D G3DSA:1.10.8.60 309 382 4.0E-24 T 26-04-2016 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 Gene3D G3DSA:3.40.50.300 134 308 4.9E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 SMART SM00382 156 303 1.2E-13 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 222 237 - T 26-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 SUPERFAMILY SSF52540 136 379 6.15E-74 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 PANTHER PTHR32071:SF15 404 490 9.6E-214 T 26-04-2016 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 PANTHER PTHR32071:SF15 1 387 9.6E-214 T 26-04-2016 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 Pfam PF00072 Response regulator receiver domain 4 113 3.0E-24 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 Gene3D G3DSA:3.40.50.2300 2 120 1.7E-31 T 26-04-2016 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 SUPERFAMILY SSF52172 2 181 1.05E-38 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 Gene3D G3DSA:1.10.10.60 423 490 1.2E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 Pfam PF00158 Sigma-54 interaction domain 137 302 9.7E-70 T 26-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 Pfam PF02954 Bacterial regulatory protein, Fis family 448 487 2.2E-9 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 SMART SM00448 2 113 7.8E-29 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 453 470 7.9E-9 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 470 490 7.9E-9 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 SUPERFAMILY SSF46689 412 490 4.44E-17 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 PANTHER PTHR32071 404 490 9.6E-214 T 26-04-2016 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 PANTHER PTHR32071 1 387 9.6E-214 T 26-04-2016 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 4 487 4.2E-204 T 26-04-2016 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 RGE_RS07070 4493fe47ff4ff44d0ea94c6a6e86f94a 491 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 349 358 - T 26-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 Gene3D G3DSA:3.50.30.10 437 541 5.3E-42 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 SUPERFAMILY SSF56059 2 413 2.24E-136 T 26-04-2016 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 552 903 2.7E-93 T 26-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 SUPERFAMILY SSF51621 547 905 1.52E-127 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 392 1.1E-72 T 26-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 SUPERFAMILY SSF52009 425 545 1.7E-38 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 795 813 - T 26-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 485 496 - T 26-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 Gene3D G3DSA:1.20.80.30 118 209 1.5E-34 T 26-04-2016 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 PANTHER PTHR22931 1 905 0.0 T 26-04-2016 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 PIRSF PIRSF000853 3 907 0.0 T 26-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 5 905 0.0 T 26-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 PANTHER PTHR22931:SF9 1 905 0.0 T 26-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 Gene3D G3DSA:1.10.189.10 377 436 3.4E-27 T 26-04-2016 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 Gene3D G3DSA:3.20.20.60 568 906 5.2E-140 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 Gene3D G3DSA:3.30.470.20 256 376 1.9E-33 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 Gene3D G3DSA:3.30.1490.20 5 117 1.6E-55 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 Gene3D G3DSA:3.30.1490.20 212 255 1.6E-55 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS10330 ca34c0db1381edc2dbf0aa45a26c86fe 907 Pfam PF00391 PEP-utilising enzyme, mobile domain 458 538 1.8E-26 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS08325 decd1064ecc6edc7e53bb4b53dad4a59 287 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 139 5.0E-40 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS08325 decd1064ecc6edc7e53bb4b53dad4a59 287 Pfam PF00700 Bacterial flagellin C-terminal helical region 201 286 4.0E-25 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS08325 decd1064ecc6edc7e53bb4b53dad4a59 287 Gene3D G3DSA:1.20.1330.10 54 243 8.3E-50 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS08325 decd1064ecc6edc7e53bb4b53dad4a59 287 SUPERFAMILY SSF64518 1 287 1.7E-86 T 26-04-2016 RGE_RS08325 decd1064ecc6edc7e53bb4b53dad4a59 287 PANTHER PTHR30244:SF1 2 287 5.4E-106 T 26-04-2016 RGE_RS08325 decd1064ecc6edc7e53bb4b53dad4a59 287 PRINTS PR00207 Flagellin signature 111 134 1.5E-21 T 26-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RGE_RS08325 decd1064ecc6edc7e53bb4b53dad4a59 287 PRINTS PR00207 Flagellin signature 37 54 1.5E-21 T 26-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RGE_RS08325 decd1064ecc6edc7e53bb4b53dad4a59 287 PRINTS PR00207 Flagellin signature 76 95 1.5E-21 T 26-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RGE_RS08325 decd1064ecc6edc7e53bb4b53dad4a59 287 PANTHER PTHR30244 2 287 5.4E-106 T 26-04-2016 RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 PANTHER PTHR24220:SF284 274 312 4.8E-96 T 26-04-2016 RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 PANTHER PTHR24220:SF284 19 243 4.8E-96 T 26-04-2016 RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 PANTHER PTHR24220:SF284 348 374 4.8E-96 T 26-04-2016 RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 SUPERFAMILY SSF50331 255 373 1.23E-22 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 Pfam PF00005 ABC transporter 38 178 2.3E-26 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 SUPERFAMILY SSF52540 28 241 2.2E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 SMART SM00382 42 228 3.0E-15 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 Pfam PF03459 TOBE domain 311 373 4.0E-14 T 26-04-2016 IPR005116 Transport-associated OB, type 1 RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 Gene3D G3DSA:3.40.50.300 37 246 3.3E-56 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 Gene3D G3DSA:2.40.50.100 298 371 1.6E-17 T 26-04-2016 RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 PANTHER PTHR24220 274 312 4.8E-96 T 26-04-2016 RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 PANTHER PTHR24220 19 243 4.8E-96 T 26-04-2016 RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 PANTHER PTHR24220 348 374 4.8E-96 T 26-04-2016 RGE_RS03080 90e348a36ef73332b499c0e05f481085 375 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 21 373 2.3E-138 T 26-04-2016 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 RGE_RS16935 dcae1b27a4b3622d44c976b3553086d6 245 Pfam PF01464 Transglycosylase SLT domain 104 217 4.5E-24 T 26-04-2016 IPR008258 Transglycosylase SLT domain 1 RGE_RS16935 dcae1b27a4b3622d44c976b3553086d6 245 SUPERFAMILY SSF53955 94 231 3.38E-36 T 26-04-2016 IPR023346 Lysozyme-like domain RGE_RS16935 dcae1b27a4b3622d44c976b3553086d6 245 Gene3D G3DSA:1.10.530.10 99 234 8.9E-38 T 26-04-2016 RGE_RS16935 dcae1b27a4b3622d44c976b3553086d6 245 PANTHER PTHR21666 83 242 1.5E-24 T 26-04-2016 RGE_RS13300 1020d6dbbf7ae408392c005cf0e049c9 186 Pfam PF01765 Ribosome recycling factor 21 184 8.1E-61 T 26-04-2016 IPR023584 Ribosome recycling factor domain RGE_RS13300 1020d6dbbf7ae408392c005cf0e049c9 186 SUPERFAMILY SSF55194 6 184 6.54E-68 T 26-04-2016 IPR023584 Ribosome recycling factor domain RGE_RS13300 1020d6dbbf7ae408392c005cf0e049c9 186 TIGRFAM TIGR00496 frr: ribosome recycling factor 12 186 1.2E-66 T 26-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RGE_RS13300 1020d6dbbf7ae408392c005cf0e049c9 186 Hamap MF_00040 Ribosome-recycling factor [frr]. 4 186 26.519 T 26-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RGE_RS13300 1020d6dbbf7ae408392c005cf0e049c9 186 Gene3D G3DSA:1.10.132.20 67 186 3.7E-42 T 26-04-2016 IPR023584 Ribosome recycling factor domain RGE_RS13300 1020d6dbbf7ae408392c005cf0e049c9 186 PANTHER PTHR20982 6 186 1.2E-74 T 26-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 26-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 PRINTS PR00340 P-II protein signature 83 103 6.6E-43 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 PRINTS PR00340 P-II protein signature 2 17 6.6E-43 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 PRINTS PR00340 P-II protein signature 52 75 6.6E-43 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 PRINTS PR00340 P-II protein signature 23 41 6.6E-43 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 PANTHER PTHR30115 1 112 1.8E-68 T 26-04-2016 RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 PANTHER PTHR30115:SF12 1 112 1.8E-68 T 26-04-2016 RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 Gene3D G3DSA:3.30.70.120 1 112 1.5E-49 T 26-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 SUPERFAMILY SSF54913 1 112 3.81E-45 T 26-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 PIRSF PIRSF039144 1 112 5.4E-53 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 8.0E-41 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 26-04-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 RGE_RS01230 a0ee63246e4ff24afe645b2832fb3162 112 SMART SM00938 4 105 1.8E-64 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS15700 153065a337d4e9635b591115e81b6194 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 3.6E-19 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS15700 153065a337d4e9635b591115e81b6194 206 SUPERFAMILY SSF48498 84 202 1.37E-13 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS15700 153065a337d4e9635b591115e81b6194 206 SUPERFAMILY SSF46689 1 75 2.44E-21 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS15700 153065a337d4e9635b591115e81b6194 206 Gene3D G3DSA:1.10.357.10 61 205 2.5E-21 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS15700 153065a337d4e9635b591115e81b6194 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.9E-10 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS15700 153065a337d4e9635b591115e81b6194 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.9E-10 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS15700 153065a337d4e9635b591115e81b6194 206 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 26-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RGE_RS15700 153065a337d4e9635b591115e81b6194 206 PANTHER PTHR30328:SF26 1 198 1.1E-29 T 26-04-2016 RGE_RS15700 153065a337d4e9635b591115e81b6194 206 PANTHER PTHR30328 1 198 1.1E-29 T 26-04-2016 RGE_RS15700 153065a337d4e9635b591115e81b6194 206 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 202 3.6E-19 T 26-04-2016 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 RGE_RS15700 153065a337d4e9635b591115e81b6194 206 Gene3D G3DSA:1.10.10.60 2 60 1.1E-24 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS12285 a49deb528494218373db13b8febce8ac 788 Gene3D G3DSA:2.40.170.20 182 787 8.1E-92 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS12285 a49deb528494218373db13b8febce8ac 788 Gene3D G3DSA:2.170.130.10 45 181 7.9E-28 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS12285 a49deb528494218373db13b8febce8ac 788 PANTHER PTHR32552:SF33 668 787 1.8E-162 T 26-04-2016 RGE_RS12285 a49deb528494218373db13b8febce8ac 788 PANTHER PTHR32552:SF33 29 477 1.8E-162 T 26-04-2016 RGE_RS12285 a49deb528494218373db13b8febce8ac 788 PANTHER PTHR32552:SF33 496 652 1.8E-162 T 26-04-2016 RGE_RS12285 a49deb528494218373db13b8febce8ac 788 PANTHER PTHR32552 668 787 1.8E-162 T 26-04-2016 RGE_RS12285 a49deb528494218373db13b8febce8ac 788 PANTHER PTHR32552 29 477 1.8E-162 T 26-04-2016 RGE_RS12285 a49deb528494218373db13b8febce8ac 788 PANTHER PTHR32552 496 652 1.8E-162 T 26-04-2016 RGE_RS12285 a49deb528494218373db13b8febce8ac 788 Pfam PF00593 TonB dependent receptor 519 785 1.6E-26 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS12285 a49deb528494218373db13b8febce8ac 788 SUPERFAMILY SSF56935 45 787 4.4E-117 T 26-04-2016 RGE_RS12285 a49deb528494218373db13b8febce8ac 788 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 172 2.3E-13 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14520 e5d2cb5bfcd4013dce5f30f414f3c543 259 Gene3D G3DSA:1.10.580.10 46 114 6.9E-9 T 26-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 RGE_RS14520 e5d2cb5bfcd4013dce5f30f414f3c543 259 Pfam PF00285 Citrate synthase, C-terminal domain 42 237 7.5E-27 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS14520 e5d2cb5bfcd4013dce5f30f414f3c543 259 Gene3D G3DSA:1.10.230.10 115 198 1.8E-10 T 26-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain RGE_RS14520 e5d2cb5bfcd4013dce5f30f414f3c543 259 PANTHER PTHR11739:SF4 47 244 6.4E-21 T 26-04-2016 RGE_RS14520 e5d2cb5bfcd4013dce5f30f414f3c543 259 PANTHER PTHR11739 47 244 6.4E-21 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS14520 e5d2cb5bfcd4013dce5f30f414f3c543 259 SUPERFAMILY SSF48256 34 247 6.28E-42 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS20430 2dbb7419ae350da5f5e1f2d31d9b968f 156 Hamap MF_00821 Protein-export protein SecB [secB]. 1 142 29.964 T 26-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RGE_RS20430 2dbb7419ae350da5f5e1f2d31d9b968f 156 PANTHER PTHR36918:SF1 2 155 2.8E-46 T 26-04-2016 RGE_RS20430 2dbb7419ae350da5f5e1f2d31d9b968f 156 Gene3D G3DSA:3.10.420.10 3 146 1.4E-56 T 26-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RGE_RS20430 2dbb7419ae350da5f5e1f2d31d9b968f 156 Pfam PF02556 Preprotein translocase subunit SecB 3 140 7.2E-53 T 26-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RGE_RS20430 2dbb7419ae350da5f5e1f2d31d9b968f 156 PANTHER PTHR36918 2 155 2.8E-46 T 26-04-2016 RGE_RS20430 2dbb7419ae350da5f5e1f2d31d9b968f 156 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 3 141 9.8E-48 T 26-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RGE_RS20430 2dbb7419ae350da5f5e1f2d31d9b968f 156 SUPERFAMILY SSF54611 3 139 4.14E-49 T 26-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RGE_RS20430 2dbb7419ae350da5f5e1f2d31d9b968f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 10 27 1.2E-28 T 26-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RGE_RS20430 2dbb7419ae350da5f5e1f2d31d9b968f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 94 116 1.2E-28 T 26-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RGE_RS20430 2dbb7419ae350da5f5e1f2d31d9b968f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 70 90 1.2E-28 T 26-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RGE_RS20430 2dbb7419ae350da5f5e1f2d31d9b968f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 120 138 1.2E-28 T 26-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 SMART SM00433 42 822 1.7E-252 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 9 829 98.123 T 26-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 12 829 3.3E-292 T 26-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 SUPERFAMILY SSF54211 243 419 1.44E-57 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR01159 DNA gyrase subunit B signature 497 506 7.9E-81 T 26-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR01159 DNA gyrase subunit B signature 401 421 7.9E-81 T 26-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR01159 DNA gyrase subunit B signature 782 794 7.9E-81 T 26-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR01159 DNA gyrase subunit B signature 218 231 7.9E-81 T 26-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR01159 DNA gyrase subunit B signature 12 22 7.9E-81 T 26-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR01159 DNA gyrase subunit B signature 242 264 7.9E-81 T 26-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR01159 DNA gyrase subunit B signature 339 355 7.9E-81 T 26-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR01159 DNA gyrase subunit B signature 269 287 7.9E-81 T 26-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR01159 DNA gyrase subunit B signature 387 401 7.9E-81 T 26-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR01159 DNA gyrase subunit B signature 203 218 7.9E-81 T 26-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR01159 DNA gyrase subunit B signature 798 814 7.9E-81 T 26-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PANTHER PTHR10169 749 829 6.0E-278 T 26-04-2016 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PANTHER PTHR10169 4 580 6.0E-278 T 26-04-2016 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 SMART SM00387 38 198 4.4E-19 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 Gene3D G3DSA:3.30.565.10 12 240 2.7E-92 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 SUPERFAMILY SSF55874 12 238 3.01E-64 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 39 197 4.5E-21 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 Pfam PF00204 DNA gyrase B 243 417 6.3E-59 T 26-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 759 818 5.9E-30 T 26-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 SUPERFAMILY SSF56719 421 587 1.1E-85 T 26-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 SUPERFAMILY SSF56719 755 819 1.1E-85 T 26-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 Pfam PF01751 Toprim domain 446 558 1.0E-17 T 26-04-2016 IPR006171 Toprim domain RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR00418 DNA topoisomerase II family signature 532 549 1.3E-67 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR00418 DNA topoisomerase II family signature 514 530 1.3E-67 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR00418 DNA topoisomerase II family signature 124 138 1.3E-67 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR00418 DNA topoisomerase II family signature 42 57 1.3E-67 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR00418 DNA topoisomerase II family signature 447 461 1.3E-67 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR00418 DNA topoisomerase II family signature 761 777 1.3E-67 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR00418 DNA topoisomerase II family signature 295 308 1.3E-67 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR00418 DNA topoisomerase II family signature 77 90 1.3E-67 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 PRINTS PR00418 DNA topoisomerase II family signature 552 564 1.3E-67 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 Gene3D G3DSA:3.40.50.670 431 577 1.0E-96 T 26-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 Gene3D G3DSA:3.40.50.670 743 811 1.0E-96 T 26-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 ProSitePatterns PS00177 DNA topoisomerase II signature. 449 457 - T 26-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS00025 cb49ad210c59fe25571287b5924d180d 829 Gene3D G3DSA:3.30.230.10 242 419 9.1E-73 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS10350 738192171e91e00c49e8ab1333680588 334 PANTHER PTHR35038 55 327 5.0E-42 T 26-04-2016 RGE_RS10350 738192171e91e00c49e8ab1333680588 334 Gene3D G3DSA:1.10.3820.10 131 181 3.1E-9 T 26-04-2016 RGE_RS10350 738192171e91e00c49e8ab1333680588 334 Gene3D G3DSA:1.10.3820.10 182 319 4.6E-21 T 26-04-2016 RGE_RS10350 738192171e91e00c49e8ab1333680588 334 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 153 187 1.6E-6 T 26-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 RGE_RS10350 738192171e91e00c49e8ab1333680588 334 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 244 280 9.1E-13 T 26-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 RGE_RS10350 738192171e91e00c49e8ab1333680588 334 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 195 237 1.2E-12 T 26-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 RGE_RS10350 738192171e91e00c49e8ab1333680588 334 SUPERFAMILY SSF48695 54 327 2.74E-50 T 26-04-2016 IPR011031 Multihaem cytochrome RGE_RS10350 738192171e91e00c49e8ab1333680588 334 TIGRFAM TIGR01905 paired_CXXCH_1: doubled CXXCH domain 195 236 9.7E-11 T 26-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 RGE_RS10350 738192171e91e00c49e8ab1333680588 334 TIGRFAM TIGR01905 paired_CXXCH_1: doubled CXXCH domain 244 279 1.3E-11 T 26-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 RGE_RS10350 738192171e91e00c49e8ab1333680588 334 TIGRFAM TIGR03508 decahem_SO: decaheme c-type cytochrome, DmsE family 55 327 1.3E-76 T 26-04-2016 IPR020015 Decaheme cytochrome, c-type, DmsE RGE_RS10350 738192171e91e00c49e8ab1333680588 334 Gene3D G3DSA:1.10.1130.10 56 130 4.8E-6 T 26-04-2016 IPR012286 Tetrahaem cytochrome domain RGE_RS08175 f2da97b7ffb3e676ace077071f856a80 278 PANTHER PTHR11364:SF0 1 278 1.4E-82 T 26-04-2016 RGE_RS08175 f2da97b7ffb3e676ace077071f856a80 278 SUPERFAMILY SSF52821 2 142 6.29E-35 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS08175 f2da97b7ffb3e676ace077071f856a80 278 SUPERFAMILY SSF52821 152 278 1.7E-29 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS08175 f2da97b7ffb3e676ace077071f856a80 278 Gene3D G3DSA:3.40.250.10 1 140 1.4E-45 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS08175 f2da97b7ffb3e676ace077071f856a80 278 Gene3D G3DSA:3.40.250.10 153 278 5.6E-34 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS08175 f2da97b7ffb3e676ace077071f856a80 278 SMART SM00450 5 132 9.6E-17 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS08175 f2da97b7ffb3e676ace077071f856a80 278 SMART SM00450 155 273 9.8E-9 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS08175 f2da97b7ffb3e676ace077071f856a80 278 PANTHER PTHR11364 1 278 1.4E-82 T 26-04-2016 RGE_RS08175 f2da97b7ffb3e676ace077071f856a80 278 Pfam PF00581 Rhodanese-like domain 159 269 7.7E-8 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS08175 f2da97b7ffb3e676ace077071f856a80 278 Pfam PF00581 Rhodanese-like domain 21 128 7.5E-12 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS18910 5ae01b46df82684b7e80a2382bf7bea1 390 SUPERFAMILY SSF55073 229 388 7.69E-43 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS18910 5ae01b46df82684b7e80a2382bf7bea1 390 Pfam PF00990 Diguanylate cyclase, GGDEF domain 224 386 2.6E-43 T 26-04-2016 IPR000160 GGDEF domain RGE_RS18910 5ae01b46df82684b7e80a2382bf7bea1 390 Gene3D G3DSA:1.20.120.50 16 143 7.2E-28 T 26-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 RGE_RS18910 5ae01b46df82684b7e80a2382bf7bea1 390 Gene3D G3DSA:3.30.70.270 226 388 1.1E-47 T 26-04-2016 RGE_RS18910 5ae01b46df82684b7e80a2382bf7bea1 390 PANTHER PTHR10799:SF750 116 387 2.3E-24 T 26-04-2016 RGE_RS18910 5ae01b46df82684b7e80a2382bf7bea1 390 Pfam PF01814 Hemerythrin HHE cation binding domain 30 142 3.0E-7 T 26-04-2016 IPR012312 Haemerythrin-like RGE_RS18910 5ae01b46df82684b7e80a2382bf7bea1 390 PANTHER PTHR10799 116 387 2.3E-24 T 26-04-2016 RGE_RS18910 5ae01b46df82684b7e80a2382bf7bea1 390 SMART SM00267 213 390 4.7E-55 T 26-04-2016 IPR000160 GGDEF domain RGE_RS18910 5ae01b46df82684b7e80a2382bf7bea1 390 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 21 143 1.9E-23 T 26-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 RGE_RS18910 5ae01b46df82684b7e80a2382bf7bea1 390 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 220 388 1.0E-43 T 26-04-2016 IPR000160 GGDEF domain RGE_RS18910 5ae01b46df82684b7e80a2382bf7bea1 390 SUPERFAMILY SSF47188 16 143 2.49E-26 T 26-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 RGE_RS21905 8fef3729a23ab3c2d4e7b5988f6a666b 909 SUPERFAMILY SSF81593 779 907 1.33E-26 T 26-04-2016 RGE_RS21905 8fef3729a23ab3c2d4e7b5988f6a666b 909 SUPERFAMILY SSF81301 496 779 3.49E-68 T 26-04-2016 RGE_RS21905 8fef3729a23ab3c2d4e7b5988f6a666b 909 SUPERFAMILY SSF81301 10 257 2.86E-59 T 26-04-2016 RGE_RS21905 8fef3729a23ab3c2d4e7b5988f6a666b 909 Pfam PF08335 GlnD PII-uridylyltransferase 791 876 1.9E-7 T 26-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RGE_RS21905 8fef3729a23ab3c2d4e7b5988f6a666b 909 Pfam PF08335 GlnD PII-uridylyltransferase 268 411 1.2E-36 T 26-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RGE_RS21905 8fef3729a23ab3c2d4e7b5988f6a666b 909 Gene3D G3DSA:3.30.460.10 612 775 4.7E-49 T 26-04-2016 RGE_RS21905 8fef3729a23ab3c2d4e7b5988f6a666b 909 Gene3D G3DSA:3.30.460.10 81 256 1.6E-54 T 26-04-2016 RGE_RS21905 8fef3729a23ab3c2d4e7b5988f6a666b 909 SUPERFAMILY SSF81593 258 412 2.35E-39 T 26-04-2016 RGE_RS21905 8fef3729a23ab3c2d4e7b5988f6a666b 909 PANTHER PTHR30621 53 909 9.7E-204 T 26-04-2016 RGE_RS21905 8fef3729a23ab3c2d4e7b5988f6a666b 909 Hamap MF_00802 Glutamate-ammonia-ligase adenylyltransferase [glnE]. 2 908 17.098 T 26-04-2016 IPR023057 Glutamate-ammonia-ligase adenylyltransferase GO:0008882 RGE_RS21905 8fef3729a23ab3c2d4e7b5988f6a666b 909 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 44 241 9.4E-51 T 26-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RGE_RS21905 8fef3729a23ab3c2d4e7b5988f6a666b 909 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 524 769 1.8E-56 T 26-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RGE_RS19160 b851759b23d1d8184586987372f67b43 781 Gene3D G3DSA:3.30.365.10 373 462 2.0E-67 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19160 b851759b23d1d8184586987372f67b43 781 Gene3D G3DSA:3.30.365.10 633 779 2.0E-67 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19160 b851759b23d1d8184586987372f67b43 781 SMART SM01008 22 140 1.8E-57 T 26-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RGE_RS19160 b851759b23d1d8184586987372f67b43 781 Gene3D G3DSA:3.30.365.10 186 292 1.0E-32 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19160 b851759b23d1d8184586987372f67b43 781 Gene3D G3DSA:3.30.365.10 463 632 1.3E-50 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19160 b851759b23d1d8184586987372f67b43 781 PANTHER PTHR11908 601 780 0.0 T 26-04-2016 RGE_RS19160 b851759b23d1d8184586987372f67b43 781 PANTHER PTHR11908 8 584 0.0 T 26-04-2016 RGE_RS19160 b851759b23d1d8184586987372f67b43 781 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 155 719 1.3E-174 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19160 b851759b23d1d8184586987372f67b43 781 Gene3D G3DSA:3.90.1170.50 4 128 5.5E-45 T 26-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RGE_RS19160 b851759b23d1d8184586987372f67b43 781 Gene3D G3DSA:3.30.365.10 294 370 1.1E-46 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19160 b851759b23d1d8184586987372f67b43 781 Gene3D G3DSA:3.30.365.10 129 185 1.1E-46 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19160 b851759b23d1d8184586987372f67b43 781 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 22 140 1.4E-29 T 26-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RGE_RS19160 b851759b23d1d8184586987372f67b43 781 PANTHER PTHR11908:SF85 601 780 0.0 T 26-04-2016 RGE_RS19160 b851759b23d1d8184586987372f67b43 781 PANTHER PTHR11908:SF85 8 584 0.0 T 26-04-2016 RGE_RS19160 b851759b23d1d8184586987372f67b43 781 SUPERFAMILY SSF54665 5 161 2.49E-47 T 26-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RGE_RS19160 b851759b23d1d8184586987372f67b43 781 SUPERFAMILY SSF56003 132 779 9.94E-203 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS08585 f138bba9156d1b33003372d1a715c04f 118 Pfam PF02635 DsrE/DsrF-like family 3 118 6.8E-21 T 26-04-2016 IPR003787 Sulphur relay, DsrE/F-like protein RGE_RS08585 f138bba9156d1b33003372d1a715c04f 118 PANTHER PTHR34874:SF2 2 118 3.6E-37 T 26-04-2016 RGE_RS08585 f138bba9156d1b33003372d1a715c04f 118 SUPERFAMILY SSF75169 1 118 1.83E-27 T 26-04-2016 IPR027396 DsrEFH-like RGE_RS08585 f138bba9156d1b33003372d1a715c04f 118 PANTHER PTHR34874 2 118 3.6E-37 T 26-04-2016 RGE_RS08585 f138bba9156d1b33003372d1a715c04f 118 Gene3D G3DSA:3.40.1260.10 1 118 1.8E-32 T 26-04-2016 IPR027396 DsrEFH-like RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 517 49.153 T 26-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 SUPERFAMILY SSF47917 388 516 2.62E-44 T 26-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 387 512 1.7E-43 T 26-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 SUPERFAMILY SSF52540 101 386 2.3E-93 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 Gene3D G3DSA:1.20.150.20 388 516 1.8E-48 T 26-04-2016 RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 Gene3D G3DSA:2.40.30.20 1 98 5.2E-33 T 26-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 PANTHER PTHR15184:SF3 1 505 8.4E-287 T 26-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 PANTHER PTHR15184 1 505 8.4E-287 T 26-04-2016 RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 PIRSF PIRSF039088 1 517 5.4E-238 T 26-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 154 380 5.2E-75 T 26-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 Gene3D G3DSA:3.40.50.300 99 387 2.2E-115 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 26 97 6.4E-15 T 26-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 SUPERFAMILY SSF50615 10 99 1.16E-26 T 26-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 517 5.6E-244 T 26-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01100 a53cf85c4fd42bc11895958c1bc6e305 517 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 371 380 - T 26-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS14595 0c05ea47af730f88dbcd9b9b025edae7 291 Gene3D G3DSA:3.90.1530.10 27 117 2.9E-22 T 26-04-2016 RGE_RS14595 0c05ea47af730f88dbcd9b9b025edae7 291 PANTHER PTHR33375 12 199 1.0E-31 T 26-04-2016 RGE_RS14595 0c05ea47af730f88dbcd9b9b025edae7 291 SMART SM00470 25 114 1.1E-18 T 26-04-2016 IPR003115 ParB/Sulfiredoxin RGE_RS14595 0c05ea47af730f88dbcd9b9b025edae7 291 PANTHER PTHR33375:SF1 12 199 1.0E-31 T 26-04-2016 RGE_RS14595 0c05ea47af730f88dbcd9b9b025edae7 291 Pfam PF08535 KorB domain 135 211 8.5E-12 T 26-04-2016 IPR013741 Transcriptional repressor protein KorB RGE_RS14595 0c05ea47af730f88dbcd9b9b025edae7 291 SUPERFAMILY SSF110849 25 149 4.88E-20 T 26-04-2016 IPR003115 ParB/Sulfiredoxin RGE_RS14595 0c05ea47af730f88dbcd9b9b025edae7 291 Pfam PF02195 ParB-like nuclease domain 29 113 2.1E-17 T 26-04-2016 IPR003115 ParB/Sulfiredoxin RGE_RS14595 0c05ea47af730f88dbcd9b9b025edae7 291 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 21 194 8.4E-32 T 26-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 SUPERFAMILY SSF50249 359 450 5.37E-22 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 Pfam PF00575 S1 RNA binding domain 287 358 5.9E-20 T 26-04-2016 IPR003029 S1 domain GO:0003676 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 Pfam PF00575 S1 RNA binding domain 30 96 1.6E-5 T 26-04-2016 IPR003029 S1 domain GO:0003676 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 Pfam PF00575 S1 RNA binding domain 201 271 5.9E-22 T 26-04-2016 IPR003029 S1 domain GO:0003676 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 Pfam PF00575 S1 RNA binding domain 373 445 1.4E-18 T 26-04-2016 IPR003029 S1 domain GO:0003676 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 Pfam PF00575 S1 RNA binding domain 114 182 1.5E-10 T 26-04-2016 IPR003029 S1 domain GO:0003676 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 Pfam PF00575 S1 RNA binding domain 462 531 1.1E-15 T 26-04-2016 IPR003029 S1 domain GO:0003676 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 SUPERFAMILY SSF50249 19 123 1.48E-17 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 15 531 5.2E-199 T 26-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 Gene3D G3DSA:2.40.50.140 460 532 1.0E-20 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 Gene3D G3DSA:2.40.50.140 195 273 8.0E-30 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 Gene3D G3DSA:2.40.50.140 113 183 2.4E-17 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 SUPERFAMILY SSF50249 201 286 2.72E-25 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 SUPERFAMILY SSF50249 266 368 2.01E-25 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 PRINTS PR00681 Ribosomal protein S1 signature 95 114 3.5E-79 T 26-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 PRINTS PR00681 Ribosomal protein S1 signature 301 320 3.5E-79 T 26-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 PRINTS PR00681 Ribosomal protein S1 signature 166 186 3.5E-79 T 26-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 PRINTS PR00681 Ribosomal protein S1 signature 137 154 3.5E-79 T 26-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 PRINTS PR00681 Ribosomal protein S1 signature 341 359 3.5E-79 T 26-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 PRINTS PR00681 Ribosomal protein S1 signature 223 244 3.5E-79 T 26-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 PRINTS PR00681 Ribosomal protein S1 signature 32 50 3.5E-79 T 26-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 PRINTS PR00681 Ribosomal protein S1 signature 50 64 3.5E-79 T 26-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 PRINTS PR00681 Ribosomal protein S1 signature 119 135 3.5E-79 T 26-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 SUPERFAMILY SSF50249 444 543 1.72E-18 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 PANTHER PTHR10724:SF6 13 525 6.7E-237 T 26-04-2016 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 PANTHER PTHR10724 13 525 6.7E-237 T 26-04-2016 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 Gene3D G3DSA:2.40.50.140 372 453 1.4E-26 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 SUPERFAMILY SSF50249 114 195 3.51E-15 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 Gene3D G3DSA:2.40.50.140 292 371 1.4E-28 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 Gene3D G3DSA:2.40.50.140 32 112 8.9E-9 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 SMART SM00316 373 445 1.9E-21 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 SMART SM00316 460 531 4.3E-18 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 SMART SM00316 201 271 1.3E-27 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 SMART SM00316 30 98 0.011 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 SMART SM00316 286 358 5.4E-24 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS06805 95035c19db2d5e152bf192005e77ba62 571 SMART SM00316 114 182 1.9E-9 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS12295 128d41114e0905f96ccd9b8f4503b047 418 PANTHER PTHR11228 17 213 1.9E-107 T 26-04-2016 RGE_RS12295 128d41114e0905f96ccd9b8f4503b047 418 PANTHER PTHR11228 239 380 1.9E-107 T 26-04-2016 RGE_RS12295 128d41114e0905f96ccd9b8f4503b047 418 Pfam PF04055 Radical SAM superfamily 14 167 4.6E-12 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS12295 128d41114e0905f96ccd9b8f4503b047 418 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 7 389 8.9E-136 T 26-04-2016 IPR023867 Anaerobic sulphatase maturase, radical SAM GO:0016491 RGE_RS12295 128d41114e0905f96ccd9b8f4503b047 418 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 164 405 5.0E-9 T 26-04-2016 RGE_RS12295 128d41114e0905f96ccd9b8f4503b047 418 Gene3D G3DSA:3.20.20.70 17 357 6.4E-43 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS12295 128d41114e0905f96ccd9b8f4503b047 418 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 282 370 3.8E-17 T 26-04-2016 IPR023885 4Fe4S-binding SPASM domain RGE_RS12295 128d41114e0905f96ccd9b8f4503b047 418 SUPERFAMILY SSF102114 16 351 1.06E-41 T 26-04-2016 RGE_RS12295 128d41114e0905f96ccd9b8f4503b047 418 PANTHER PTHR11228:SF24 17 213 1.9E-107 T 26-04-2016 RGE_RS12295 128d41114e0905f96ccd9b8f4503b047 418 PANTHER PTHR11228:SF24 239 380 1.9E-107 T 26-04-2016 RGE_RS12295 128d41114e0905f96ccd9b8f4503b047 418 Pfam PF13186 Iron-sulfur cluster-binding domain 283 342 1.3E-6 T 26-04-2016 IPR023885 4Fe4S-binding SPASM domain RGE_RS07940 1dd83f2a7189213191e94a399ce0fd92 346 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 5 343 48.17 T 26-04-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS07940 1dd83f2a7189213191e94a399ce0fd92 346 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 299 319 - T 26-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 RGE_RS07940 1dd83f2a7189213191e94a399ce0fd92 346 Pfam PF01180 Dihydroorotate dehydrogenase 50 343 4.8E-85 T 26-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 RGE_RS07940 1dd83f2a7189213191e94a399ce0fd92 346 PIRSF PIRSF000164 16 346 9.7E-95 T 26-04-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Reactome: REACT_1698 RGE_RS07940 1dd83f2a7189213191e94a399ce0fd92 346 SUPERFAMILY SSF51395 4 344 2.1E-101 T 26-04-2016 RGE_RS07940 1dd83f2a7189213191e94a399ce0fd92 346 PANTHER PTHR11938 9 345 5.7E-84 T 26-04-2016 RGE_RS07940 1dd83f2a7189213191e94a399ce0fd92 346 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 83 102 - T 26-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 RGE_RS07940 1dd83f2a7189213191e94a399ce0fd92 346 Gene3D G3DSA:3.20.20.70 5 345 1.1E-126 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS07940 1dd83f2a7189213191e94a399ce0fd92 346 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 6 345 6.8E-123 T 26-04-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 SUPERFAMILY SSF100934 507 618 1.1E-32 T 26-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 PANTHER PTHR19375:SF176 19 608 4.0E-256 T 26-04-2016 RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 SUPERFAMILY SSF53067 19 197 6.15E-52 T 26-04-2016 RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 26-04-2016 IPR018181 Heat shock protein 70, conserved site RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 Gene3D G3DSA:3.30.30.30 73 112 2.3E-7 T 26-04-2016 RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 SUPERFAMILY SSF53067 200 379 1.8E-49 T 26-04-2016 RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 Gene3D G3DSA:3.90.640.10 239 313 2.0E-4 T 26-04-2016 RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 619 41.866 T 26-04-2016 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 617 2.4E-270 T 26-04-2016 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 Pfam PF00012 Hsp70 protein 21 600 1.9E-172 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 PANTHER PTHR19375 19 608 4.0E-256 T 26-04-2016 RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 SUPERFAMILY SSF100920 387 540 2.75E-47 T 26-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 PRINTS PR00301 70kDa heat shock protein signature 211 221 2.3E-53 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 PRINTS PR00301 70kDa heat shock protein signature 48 60 2.3E-53 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 PRINTS PR00301 70kDa heat shock protein signature 388 407 2.3E-53 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 PRINTS PR00301 70kDa heat shock protein signature 469 485 2.3E-53 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 PRINTS PR00301 70kDa heat shock protein signature 363 383 2.3E-53 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 PRINTS PR00301 70kDa heat shock protein signature 332 348 2.3E-53 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 PRINTS PR00301 70kDa heat shock protein signature 152 172 2.3E-53 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 PRINTS PR00301 70kDa heat shock protein signature 20 33 2.3E-53 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 26-04-2016 IPR018181 Heat shock protein 70, conserved site RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 Gene3D G3DSA:1.20.1270.10 532 617 2.8E-26 T 26-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 Gene3D G3DSA:3.30.420.40 206 238 2.8E-28 T 26-04-2016 RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 Gene3D G3DSA:3.30.420.40 317 358 2.8E-28 T 26-04-2016 RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 Gene3D G3DSA:2.60.34.10 390 531 9.3E-49 T 26-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 335 349 - T 26-04-2016 IPR018181 Heat shock protein 70, conserved site RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 Gene3D G3DSA:3.30.420.40 133 205 4.1E-51 T 26-04-2016 RGE_RS07600 b63475f8f9cb330f7fb9aa0a246053d3 619 Gene3D G3DSA:3.30.420.40 20 72 4.1E-51 T 26-04-2016 RGE_RS19630 de1ab93db6db53c3cb98ae28396a2602 277 PIRSF PIRSF034452 1 277 1.4E-154 T 26-04-2016 IPR009215 TIM-barrel domain, IGPS-like RGE_RS19630 de1ab93db6db53c3cb98ae28396a2602 277 PANTHER PTHR31862 5 277 3.2E-112 T 26-04-2016 RGE_RS19630 de1ab93db6db53c3cb98ae28396a2602 277 SUPERFAMILY SSF51621 3 197 1.44E-81 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS19630 de1ab93db6db53c3cb98ae28396a2602 277 Gene3D G3DSA:1.20.5.460 253 276 2.3E-6 T 26-04-2016 RGE_RS19630 de1ab93db6db53c3cb98ae28396a2602 277 Gene3D G3DSA:3.20.20.70 2 252 2.6E-127 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS19630 de1ab93db6db53c3cb98ae28396a2602 277 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 8 274 1.4E-130 T 26-04-2016 IPR009215 TIM-barrel domain, IGPS-like RGE_RS20905 4134037fdeeae4bbcb0a6a3824e0eafb 488 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 63 471 1.1E-107 T 26-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RGE_RS20905 4134037fdeeae4bbcb0a6a3824e0eafb 488 Gene3D G3DSA:3.40.50.1980 349 486 4.2E-62 T 26-04-2016 RGE_RS20905 4134037fdeeae4bbcb0a6a3824e0eafb 488 PANTHER PTHR33712 22 485 2.5E-299 T 26-04-2016 RGE_RS20905 4134037fdeeae4bbcb0a6a3824e0eafb 488 TIGRFAM TIGR01282 nifD: nitrogenase molybdenum-iron protein alpha chain 15 484 1.3E-264 T 26-04-2016 IPR005972 Nitrogenase molybdenum-iron protein alpha chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RGE_RS20905 4134037fdeeae4bbcb0a6a3824e0eafb 488 Gene3D G3DSA:3.40.50.1980 13 213 2.1E-76 T 26-04-2016 RGE_RS20905 4134037fdeeae4bbcb0a6a3824e0eafb 488 PANTHER PTHR33712:SF4 22 485 2.5E-299 T 26-04-2016 RGE_RS20905 4134037fdeeae4bbcb0a6a3824e0eafb 488 SUPERFAMILY SSF53807 29 479 9.42E-162 T 26-04-2016 RGE_RS20905 4134037fdeeae4bbcb0a6a3824e0eafb 488 Gene3D G3DSA:3.40.50.1980 218 323 1.2E-52 T 26-04-2016 RGE_RS20905 4134037fdeeae4bbcb0a6a3824e0eafb 488 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 82 89 - T 26-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RGE_RS20905 4134037fdeeae4bbcb0a6a3824e0eafb 488 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 153 167 - T 26-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RGE_RS20905 4134037fdeeae4bbcb0a6a3824e0eafb 488 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 31 477 7.2E-189 T 26-04-2016 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RGE_RS18625 a729860b5a04933616d75c83f9e824aa 400 Gene3D G3DSA:3.20.20.140 73 347 9.2E-43 T 26-04-2016 RGE_RS18625 a729860b5a04933616d75c83f9e824aa 400 Pfam PF01979 Amidohydrolase family 60 388 8.6E-18 T 26-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RGE_RS18625 a729860b5a04933616d75c83f9e824aa 400 PANTHER PTHR22642:SF1 51 386 1.0E-122 T 26-04-2016 RGE_RS18625 a729860b5a04933616d75c83f9e824aa 400 TIGRFAM TIGR01224 hutI: imidazolonepropionase 24 388 7.9E-131 T 26-04-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RGE_RS18625 a729860b5a04933616d75c83f9e824aa 400 SUPERFAMILY SSF51556 63 359 3.27E-85 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS18625 a729860b5a04933616d75c83f9e824aa 400 Gene3D G3DSA:2.30.40.10 348 383 3.2E-5 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS18625 a729860b5a04933616d75c83f9e824aa 400 Gene3D G3DSA:2.30.40.10 7 72 3.8E-11 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS18625 a729860b5a04933616d75c83f9e824aa 400 PANTHER PTHR22642 51 386 1.0E-122 T 26-04-2016 RGE_RS18625 a729860b5a04933616d75c83f9e824aa 400 Hamap MF_00372 Imidazolonepropionase [hutI]. 3 400 39.906 T 26-04-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RGE_RS18625 a729860b5a04933616d75c83f9e824aa 400 SUPERFAMILY SSF51338 362 397 1.34E-24 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS18625 a729860b5a04933616d75c83f9e824aa 400 SUPERFAMILY SSF51338 4 63 1.34E-24 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS05250 9be0baf84821a1954174fa33bfe836ef 307 Gene3D G3DSA:3.40.50.300 138 306 2.0E-25 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05250 9be0baf84821a1954174fa33bfe836ef 307 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 138 275 5.5E-7 T 26-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RGE_RS05250 9be0baf84821a1954174fa33bfe836ef 307 PANTHER PTHR32309 109 306 8.0E-42 T 26-04-2016 RGE_RS05250 9be0baf84821a1954174fa33bfe836ef 307 SUPERFAMILY SSF160246 33 105 3.66E-11 T 26-04-2016 RGE_RS05250 9be0baf84821a1954174fa33bfe836ef 307 PANTHER PTHR32309:SF13 109 306 8.0E-42 T 26-04-2016 RGE_RS05250 9be0baf84821a1954174fa33bfe836ef 307 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 115 306 1.4E-36 T 26-04-2016 IPR005702 Exopolysaccharide synthesis protein GO:0045226 RGE_RS05250 9be0baf84821a1954174fa33bfe836ef 307 SUPERFAMILY SSF52540 138 306 2.34E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15645 0368c920db18fa45985ce2389d1e340f 834 SUPERFAMILY SSF69255 378 471 1.78E-16 T 26-04-2016 RGE_RS15645 0368c920db18fa45985ce2389d1e340f 834 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 545 651 2.2E-29 T 26-04-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain RGE_RS15645 0368c920db18fa45985ce2389d1e340f 834 SUPERFAMILY SSF69279 8 178 7.94E-30 T 26-04-2016 RGE_RS15645 0368c920db18fa45985ce2389d1e340f 834 Gene3D G3DSA:2.40.50.230 385 471 6.3E-17 T 26-04-2016 IPR006531 Gp5 N-terminal RGE_RS15645 0368c920db18fa45985ce2389d1e340f 834 SUPERFAMILY SSF69279 357 377 5.95E-9 T 26-04-2016 RGE_RS15645 0368c920db18fa45985ce2389d1e340f 834 SUPERFAMILY SSF69279 203 330 5.95E-9 T 26-04-2016 RGE_RS15645 0368c920db18fa45985ce2389d1e340f 834 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 685 833 1.4E-16 T 26-04-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal RGE_RS15645 0368c920db18fa45985ce2389d1e340f 834 Pfam PF05954 Phage late control gene D protein (GPD) 29 327 4.1E-40 T 26-04-2016 RGE_RS15645 0368c920db18fa45985ce2389d1e340f 834 Gene3D G3DSA:3.55.50.10 97 187 1.9E-13 T 26-04-2016 RGE_RS15645 0368c920db18fa45985ce2389d1e340f 834 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 21 476 1.1E-46 T 26-04-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 Gene3D G3DSA:2.70.98.40 1439 1716 6.5E-50 T 26-04-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 Gene3D G3DSA:2.70.98.40 1938 2234 1.4E-49 T 26-04-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 PANTHER PTHR37469:SF2 67 2665 0.0 T 26-04-2016 RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 Pfam PF06165 Glycosyltransferase family 36 1940 2175 1.2E-48 T 26-04-2016 IPR010383 Glycosyl hydrolase 94 RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 Pfam PF06165 Glycosyltransferase family 36 1440 1688 3.4E-45 T 26-04-2016 IPR010383 Glycosyl hydrolase 94 RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 SUPERFAMILY SSF74650 1435 1692 7.22E-46 T 26-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 SUPERFAMILY SSF74650 1933 2177 2.1E-46 T 26-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 Pfam PF10091 Putative glucoamylase 1178 1375 3.5E-10 T 26-04-2016 IPR019282 Domain of unknown function DUF2329 RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 2206 2638 3.1E-99 T 26-04-2016 IPR033432 Glycosyl hydrolase 36, catalytic domain RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 SMART SM01068 1418 1475 0.032 T 26-04-2016 IPR009342 Putative carbohydrate binding domain RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 SMART SM01068 1917 1982 1.2E-20 T 26-04-2016 IPR009342 Putative carbohydrate binding domain RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 SUPERFAMILY SSF48208 2191 2679 2.18E-76 T 26-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 RGE_RS18415 00877b9a03b8e0eb6d806fcc64cbbf2c 2717 PANTHER PTHR37469 67 2665 0.0 T 26-04-2016 RGE_RS23205 e9c852c43417aa2c57f7a55a57558262 124 Gene3D G3DSA:3.40.50.2300 1 112 5.4E-30 T 26-04-2016 RGE_RS23205 e9c852c43417aa2c57f7a55a57558262 124 PANTHER PTHR26402 1 110 1.2E-29 T 26-04-2016 RGE_RS23205 e9c852c43417aa2c57f7a55a57558262 124 Pfam PF00072 Response regulator receiver domain 1 109 1.1E-21 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23205 e9c852c43417aa2c57f7a55a57558262 124 SMART SM00448 1 110 7.1E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23205 e9c852c43417aa2c57f7a55a57558262 124 SUPERFAMILY SSF52172 1 111 6.97E-32 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS16105 1379a6e5eb191cfe5583d5b229b7a6bc 566 SMART SM00220 7 251 0.0028 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS16105 1379a6e5eb191cfe5583d5b229b7a6bc 566 Gene3D G3DSA:1.10.3150.10 265 543 4.7E-33 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS16105 1379a6e5eb191cfe5583d5b229b7a6bc 566 Gene3D G3DSA:1.10.510.10 118 176 2.4E-5 T 26-04-2016 RGE_RS16105 1379a6e5eb191cfe5583d5b229b7a6bc 566 SUPERFAMILY SSF56112 5 252 3.86E-17 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS16105 1379a6e5eb191cfe5583d5b229b7a6bc 566 SUPERFAMILY SSF109604 264 542 3.77E-31 T 26-04-2016 RGE_RS16105 1379a6e5eb191cfe5583d5b229b7a6bc 566 Gene3D G3DSA:3.30.200.20 5 117 9.1E-5 T 26-04-2016 RGE_RS16105 1379a6e5eb191cfe5583d5b229b7a6bc 566 Pfam PF08668 HDOD domain 274 474 3.5E-17 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 38 435 4.1E-155 T 26-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 Gene3D G3DSA:3.40.50.1980 32 248 6.3E-80 T 26-04-2016 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 238 270 - T 26-04-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 10 436 40.67 T 26-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 SUPERFAMILY SSF53720 32 436 1.61E-81 T 26-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 PIRSF PIRSF000099 7 439 1.0E-154 T 26-04-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 PRINTS PR00083 Histidinol dehydrogenase signature 145 171 5.1E-83 T 26-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 PRINTS PR00083 Histidinol dehydrogenase signature 179 205 5.1E-83 T 26-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 PRINTS PR00083 Histidinol dehydrogenase signature 260 279 5.1E-83 T 26-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 PRINTS PR00083 Histidinol dehydrogenase signature 238 259 5.1E-83 T 26-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 PRINTS PR00083 Histidinol dehydrogenase signature 329 354 5.1E-83 T 26-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 PRINTS PR00083 Histidinol dehydrogenase signature 38 62 5.1E-83 T 26-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 PRINTS PR00083 Histidinol dehydrogenase signature 370 388 5.1E-83 T 26-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 PRINTS PR00083 Histidinol dehydrogenase signature 209 234 5.1E-83 T 26-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 Pfam PF00815 Histidinol dehydrogenase 28 436 3.9E-164 T 26-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RGE_RS04210 096e608cbdd7f8e83ce779a77c7f8bb2 439 PANTHER PTHR21256 4 439 6.6E-191 T 26-04-2016 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 496 4.6E-210 T 26-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 451 9.1E-63 T 26-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 PANTHER PTHR10196:SF9 1 495 4.3E-234 T 26-04-2016 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 Gene3D G3DSA:3.30.420.40 252 495 6.1E-95 T 26-04-2016 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 26-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 SUPERFAMILY SSF53067 4 253 8.37E-94 T 26-04-2016 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 Hamap MF_00186 Glycerol kinase [glpK]. 2 498 55.434 T 26-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 PIRSF PIRSF000538 2 497 1.9E-176 T 26-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 SUPERFAMILY SSF53067 253 496 7.4E-79 T 26-04-2016 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 360 380 - T 26-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 Gene3D G3DSA:3.30.420.40 2 251 1.1E-102 T 26-04-2016 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 PANTHER PTHR10196 1 495 4.3E-234 T 26-04-2016 RGE_RS00940 899cc3ebb24e7f1c589a8a1cf665e190 498 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 250 8.2E-78 T 26-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 Pfam PF08529 NusA N-terminal domain 4 127 4.4E-33 T 26-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 SUPERFAMILY SSF50249 138 201 5.8E-16 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 SUPERFAMILY SSF54814 281 344 1.18E-15 T 26-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 Pfam PF13184 NusA-like KH domain 232 299 8.0E-26 T 26-04-2016 IPR025249 KH domain, NusA-like GO:0003723 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 SMART SM00316 136 202 4.2E-9 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 Pfam PF14520 Helix-hairpin-helix domain 432 487 7.7E-10 T 26-04-2016 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 SMART SM00322 303 381 1.0E-4 T 26-04-2016 IPR004087 K Homology domain GO:0003676 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 Gene3D G3DSA:1.10.150.20 356 422 5.7E-21 T 26-04-2016 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 Gene3D G3DSA:1.10.150.20 429 491 3.0E-22 T 26-04-2016 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 PANTHER PTHR22648:SF0 1 448 9.2E-155 T 26-04-2016 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 SUPERFAMILY SSF69705 1 128 2.88E-36 T 26-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 367 416 4.9E-18 T 26-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 443 489 8.2E-14 T 26-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 Gene3D G3DSA:3.30.300.20 280 348 5.6E-29 T 26-04-2016 IPR015946 K homology domain-like, alpha/beta RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 SUPERFAMILY SSF47794 357 418 4.55E-15 T 26-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 SUPERFAMILY SSF54814 203 280 4.19E-28 T 26-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 SUPERFAMILY SSF47794 429 491 2.04E-14 T 26-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 Gene3D G3DSA:3.30.300.20 201 279 1.3E-32 T 26-04-2016 IPR015946 K homology domain-like, alpha/beta RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 344 1.3E-119 T 26-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 Gene3D G3DSA:2.40.50.140 139 200 3.0E-23 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 Pfam PF00575 S1 RNA binding domain 138 196 1.6E-5 T 26-04-2016 IPR003029 S1 domain GO:0003676 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 PANTHER PTHR22648 1 448 9.2E-155 T 26-04-2016 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 Gene3D G3DSA:3.30.1480.10 1 128 3.7E-41 T 26-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RGE_RS13770 55c488d118604b1fb3665fe21df77178 492 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 426 28.478 T 26-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 RGE_RS15390 9e7c4a0f0d2ff457f0a0e68f757e91c3 428 SUPERFAMILY SSF56037 314 427 1.28E-17 T 26-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RGE_RS15390 9e7c4a0f0d2ff457f0a0e68f757e91c3 428 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 1 295 18.657 T 26-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RGE_RS15390 9e7c4a0f0d2ff457f0a0e68f757e91c3 428 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 5 193 2.5E-42 T 26-04-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RGE_RS15390 9e7c4a0f0d2ff457f0a0e68f757e91c3 428 SMART SM00977 353 425 3.5E-14 T 26-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RGE_RS15390 9e7c4a0f0d2ff457f0a0e68f757e91c3 428 SUPERFAMILY SSF52402 5 221 3.14E-53 T 26-04-2016 RGE_RS15390 9e7c4a0f0d2ff457f0a0e68f757e91c3 428 PANTHER PTHR11807:SF2 5 225 1.1E-49 T 26-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RGE_RS15390 9e7c4a0f0d2ff457f0a0e68f757e91c3 428 Pfam PF01171 PP-loop family 5 189 3.8E-46 T 26-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal RGE_RS15390 9e7c4a0f0d2ff457f0a0e68f757e91c3 428 SUPERFAMILY SSF82829 223 300 2.62E-6 T 26-04-2016 RGE_RS15390 9e7c4a0f0d2ff457f0a0e68f757e91c3 428 Pfam PF11734 TilS substrate C-terminal domain 354 425 1.9E-17 T 26-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RGE_RS15390 9e7c4a0f0d2ff457f0a0e68f757e91c3 428 Gene3D G3DSA:3.40.50.620 4 176 4.9E-11 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS15390 9e7c4a0f0d2ff457f0a0e68f757e91c3 428 PANTHER PTHR11807 5 225 1.1E-49 T 26-04-2016 RGE_RS19705 048d941e94ce9cf35087b2dc144b55eb 354 SUPERFAMILY SSF53067 5 77 1.3E-5 T 26-04-2016 RGE_RS19705 048d941e94ce9cf35087b2dc144b55eb 354 SUPERFAMILY SSF53067 118 160 1.3E-5 T 26-04-2016 RGE_RS19705 048d941e94ce9cf35087b2dc144b55eb 354 TIGRFAM TIGR03123 one_C_unchar_1: probable H4MPT-linked C1 transfer pathway protein 6 345 1.1E-86 T 26-04-2016 IPR002756 4-[[4-(2-aminoethyl)phenoxy]-methyl]-2-furanmethanamine-glutamate synthase UniPathway: UPA00080 RGE_RS19705 048d941e94ce9cf35087b2dc144b55eb 354 Gene3D G3DSA:3.30.420.40 5 121 2.6E-34 T 26-04-2016 RGE_RS19705 048d941e94ce9cf35087b2dc144b55eb 354 Pfam PF01968 Hydantoinase/oxoprolinase 62 301 5.1E-7 T 26-04-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 RGE_RS19705 048d941e94ce9cf35087b2dc144b55eb 354 Gene3D G3DSA:3.30.420.190 122 348 9.6E-72 T 26-04-2016 RGE_RS23025 d1d7cf9e6f9d06f05aa3760701caafca 307 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 254 298 - T 26-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RGE_RS23025 d1d7cf9e6f9d06f05aa3760701caafca 307 Pfam PF14525 AraC-binding-like domain 10 177 7.5E-7 T 26-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RGE_RS23025 d1d7cf9e6f9d06f05aa3760701caafca 307 SMART SM00342 217 302 3.1E-26 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS23025 d1d7cf9e6f9d06f05aa3760701caafca 307 Gene3D G3DSA:1.10.10.60 197 254 1.8E-16 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23025 d1d7cf9e6f9d06f05aa3760701caafca 307 Gene3D G3DSA:1.10.10.60 255 300 2.3E-6 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23025 d1d7cf9e6f9d06f05aa3760701caafca 307 PANTHER PTHR11019 46 307 8.0E-31 T 26-04-2016 RGE_RS23025 d1d7cf9e6f9d06f05aa3760701caafca 307 PANTHER PTHR11019:SF54 46 307 8.0E-31 T 26-04-2016 RGE_RS23025 d1d7cf9e6f9d06f05aa3760701caafca 307 SUPERFAMILY SSF46689 202 252 1.08E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23025 d1d7cf9e6f9d06f05aa3760701caafca 307 Pfam PF12833 Helix-turn-helix domain 224 304 4.5E-24 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS20820 ebbc9ad8547a16bbb3ba15c092ac371c 128 PANTHER PTHR10072:SF26 8 104 8.9E-16 T 26-04-2016 RGE_RS20820 ebbc9ad8547a16bbb3ba15c092ac371c 128 PANTHER PTHR10072 8 104 8.9E-16 T 26-04-2016 RGE_RS20820 ebbc9ad8547a16bbb3ba15c092ac371c 128 Gene3D G3DSA:2.60.300.12 4 97 2.6E-19 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS20820 ebbc9ad8547a16bbb3ba15c092ac371c 128 SUPERFAMILY SSF89360 4 97 6.08E-21 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS20820 ebbc9ad8547a16bbb3ba15c092ac371c 128 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 7 106 5.0E-20 T 26-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RGE_RS20820 ebbc9ad8547a16bbb3ba15c092ac371c 128 Pfam PF01521 Iron-sulphur cluster biosynthesis 7 104 4.1E-11 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS05135 0b248720b1fb337073b6b44f80673c3e 466 SUPERFAMILY SSF81648 358 456 1.31E-18 T 26-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 RGE_RS05135 0b248720b1fb337073b6b44f80673c3e 466 Gene3D G3DSA:1.20.810.10 18 319 7.4E-159 T 26-04-2016 IPR027387 Cytochrome b/b6-like domain RGE_RS05135 0b248720b1fb337073b6b44f80673c3e 466 Gene3D G3DSA:1.20.810.10 367 459 7.4E-159 T 26-04-2016 IPR027387 Cytochrome b/b6-like domain RGE_RS05135 0b248720b1fb337073b6b44f80673c3e 466 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 290 332 3.1E-15 T 26-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 RGE_RS05135 0b248720b1fb337073b6b44f80673c3e 466 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 358 438 1.3E-26 T 26-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 RGE_RS05135 0b248720b1fb337073b6b44f80673c3e 466 PANTHER PTHR19271:SF9 14 318 6.9E-224 T 26-04-2016 RGE_RS05135 0b248720b1fb337073b6b44f80673c3e 466 PANTHER PTHR19271:SF9 366 464 6.9E-224 T 26-04-2016 RGE_RS05135 0b248720b1fb337073b6b44f80673c3e 466 SUPERFAMILY SSF81342 20 292 2.35E-97 T 26-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RGE_RS05135 0b248720b1fb337073b6b44f80673c3e 466 Pfam PF00033 Cytochrome b/b6/petB 36 224 5.0E-67 T 26-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RGE_RS05135 0b248720b1fb337073b6b44f80673c3e 466 PANTHER PTHR19271 14 318 6.9E-224 T 26-04-2016 RGE_RS05135 0b248720b1fb337073b6b44f80673c3e 466 PANTHER PTHR19271 366 464 6.9E-224 T 26-04-2016 RGE_RS05135 0b248720b1fb337073b6b44f80673c3e 466 SUPERFAMILY SSF81648 293 333 7.63E-11 T 26-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 RGE_RS23005 c39640e7219b46772c50c18e430a3a12 407 SUPERFAMILY SSF55781 75 226 3.08E-14 T 26-04-2016 IPR029016 GAF domain-like RGE_RS23005 c39640e7219b46772c50c18e430a3a12 407 Gene3D G3DSA:3.30.70.270 236 403 2.2E-47 T 26-04-2016 RGE_RS23005 c39640e7219b46772c50c18e430a3a12 407 PANTHER PTHR10799 195 397 1.8E-26 T 26-04-2016 RGE_RS23005 c39640e7219b46772c50c18e430a3a12 407 Pfam PF13185 GAF domain 74 215 1.3E-28 T 26-04-2016 IPR003018 GAF domain GO:0005515 RGE_RS23005 c39640e7219b46772c50c18e430a3a12 407 PANTHER PTHR10799:SF750 195 397 1.8E-26 T 26-04-2016 RGE_RS23005 c39640e7219b46772c50c18e430a3a12 407 SMART SM00267 223 401 1.4E-59 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23005 c39640e7219b46772c50c18e430a3a12 407 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 231 399 4.1E-44 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23005 c39640e7219b46772c50c18e430a3a12 407 SUPERFAMILY SSF55073 239 401 1.73E-43 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS23005 c39640e7219b46772c50c18e430a3a12 407 Gene3D G3DSA:3.30.450.40 56 230 1.6E-10 T 26-04-2016 IPR029016 GAF domain-like RGE_RS23005 c39640e7219b46772c50c18e430a3a12 407 Pfam PF00990 Diguanylate cyclase, GGDEF domain 235 397 1.0E-41 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23005 c39640e7219b46772c50c18e430a3a12 407 SMART SM00065 86 224 7.6E-7 T 26-04-2016 IPR003018 GAF domain GO:0005515 RGE_RS10685 844ad24f039fcd5da1f636fc665366ca 263 Gene3D G3DSA:1.10.10.10 177 254 6.9E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10685 844ad24f039fcd5da1f636fc665366ca 263 Pfam PF13545 Crp-like helix-turn-helix domain 179 252 1.1E-12 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS10685 844ad24f039fcd5da1f636fc665366ca 263 Gene3D G3DSA:2.60.120.10 37 172 1.9E-24 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS10685 844ad24f039fcd5da1f636fc665366ca 263 SMART SM00100 41 159 2.8E-10 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS10685 844ad24f039fcd5da1f636fc665366ca 263 SUPERFAMILY SSF51206 35 174 9.56E-29 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS10685 844ad24f039fcd5da1f636fc665366ca 263 SUPERFAMILY SSF46785 178 255 2.66E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10685 844ad24f039fcd5da1f636fc665366ca 263 SMART SM00419 198 246 0.0018 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS10685 844ad24f039fcd5da1f636fc665366ca 263 Pfam PF00027 Cyclic nucleotide-binding domain 60 147 8.6E-15 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS10685 844ad24f039fcd5da1f636fc665366ca 263 PANTHER PTHR24567 40 254 3.7E-40 T 26-04-2016 RGE_RS13865 d80db634433ea3ccd195271ba1bdbf7a 295 PANTHER PTHR12149 1 295 1.9E-72 T 26-04-2016 RGE_RS13865 d80db634433ea3ccd195271ba1bdbf7a 295 Gene3D G3DSA:3.90.1200.10 98 264 2.6E-7 T 26-04-2016 RGE_RS13865 d80db634433ea3ccd195271ba1bdbf7a 295 SUPERFAMILY SSF56112 10 288 4.96E-30 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS13865 d80db634433ea3ccd195271ba1bdbf7a 295 Gene3D G3DSA:3.30.200.20 5 88 2.6E-7 T 26-04-2016 RGE_RS13865 d80db634433ea3ccd195271ba1bdbf7a 295 PANTHER PTHR12149:SF8 1 295 1.9E-72 T 26-04-2016 RGE_RS13865 d80db634433ea3ccd195271ba1bdbf7a 295 PIRSF PIRSF006221 1 295 8.2E-62 T 26-04-2016 IPR016477 Fructosamine/Ketosamine-3-kinase RGE_RS13865 d80db634433ea3ccd195271ba1bdbf7a 295 Pfam PF03881 Fructosamine kinase 27 291 1.6E-65 T 26-04-2016 IPR016477 Fructosamine/Ketosamine-3-kinase RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 542 560 6.4E-38 T 26-04-2016 IPR001270 ClpA/B family GO:0005524 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 500 518 6.4E-38 T 26-04-2016 IPR001270 ClpA/B family GO:0005524 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 604 618 6.4E-38 T 26-04-2016 IPR001270 ClpA/B family GO:0005524 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 571 589 6.4E-38 T 26-04-2016 IPR001270 ClpA/B family GO:0005524 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 SMART SM01086 662 752 1.6E-31 T 26-04-2016 IPR019489 Clp ATPase, C-terminal RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 SUPERFAMILY SSF81923 1 143 3.27E-56 T 26-04-2016 IPR004176 Clp, N-terminal GO:0019538 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 Gene3D G3DSA:1.10.8.60 674 750 1.4E-27 T 26-04-2016 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 Pfam PF07724 AAA domain (Cdc48 subfamily) 495 656 1.3E-47 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 Gene3D G3DSA:1.10.8.60 360 443 3.5E-30 T 26-04-2016 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 662 742 4.6E-22 T 26-04-2016 IPR019489 Clp ATPase, C-terminal RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 743 0.0 T 26-04-2016 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 220 333 7.1E-12 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 527 545 - T 26-04-2016 IPR028299 ClpA/B, conserved site 2 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 1.2E-13 T 26-04-2016 IPR004176 Clp, N-terminal GO:0019538 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 SUPERFAMILY SSF52540 446 749 1.37E-79 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 Gene3D G3DSA:1.10.1780.10 1 143 6.1E-40 T 26-04-2016 IPR004176 Clp, N-terminal GO:0019538 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 SUPERFAMILY SSF52540 177 429 6.36E-67 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 PANTHER PTHR11638 159 770 0.0 T 26-04-2016 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 PANTHER PTHR11638 1 140 0.0 T 26-04-2016 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 Gene3D G3DSA:3.40.50.300 451 673 1.5E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 Gene3D G3DSA:3.40.50.300 180 358 1.3E-42 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 PANTHER PTHR11638:SF111 159 770 0.0 T 26-04-2016 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 PANTHER PTHR11638:SF111 1 140 0.0 T 26-04-2016 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 311 323 - T 26-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 SMART SM00382 496 672 2.8E-10 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS15435 91d0c001abc9d792efb9b58fb7aae3aa 770 SMART SM00382 215 360 1.0E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS12585 0d473109de5fa1896f46abbc403ff0a0 329 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 12 140 1.3E-31 T 26-04-2016 IPR017748 Type VI secretion system-associated, BMAA0400 RGE_RS12585 0d473109de5fa1896f46abbc403ff0a0 329 Gene3D G3DSA:3.40.1730.10 12 186 2.4E-33 T 26-04-2016 RGE_RS12585 0d473109de5fa1896f46abbc403ff0a0 329 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 12 130 4.0E-25 T 26-04-2016 IPR017748 Type VI secretion system-associated, BMAA0400 RGE_RS03245 3471cc652e20c5647d97c94b3f19d09f 272 Gene3D G3DSA:3.30.950.10 134 261 7.4E-46 T 26-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RGE_RS03245 3471cc652e20c5647d97c94b3f19d09f 272 PANTHER PTHR21091:SF16 15 249 3.7E-67 T 26-04-2016 RGE_RS03245 3471cc652e20c5647d97c94b3f19d09f 272 SUPERFAMILY SSF53790 16 255 3.14E-74 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS03245 3471cc652e20c5647d97c94b3f19d09f 272 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 19 231 5.0E-45 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS03245 3471cc652e20c5647d97c94b3f19d09f 272 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 18 254 3.1E-85 T 26-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RGE_RS03245 3471cc652e20c5647d97c94b3f19d09f 272 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 23 37 - T 26-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RGE_RS03245 3471cc652e20c5647d97c94b3f19d09f 272 PANTHER PTHR21091 15 249 3.7E-67 T 26-04-2016 RGE_RS03245 3471cc652e20c5647d97c94b3f19d09f 272 Gene3D G3DSA:3.40.1010.10 18 133 2.8E-39 T 26-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RGE_RS13070 9d2ff3d4d9e1c21b28dc938a4ceecaa9 244 Pfam PF00072 Response regulator receiver domain 12 121 2.7E-30 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS13070 9d2ff3d4d9e1c21b28dc938a4ceecaa9 244 Gene3D G3DSA:1.10.10.10 139 241 2.2E-32 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13070 9d2ff3d4d9e1c21b28dc938a4ceecaa9 244 Gene3D G3DSA:3.40.50.2300 3 129 1.7E-40 T 26-04-2016 RGE_RS13070 9d2ff3d4d9e1c21b28dc938a4ceecaa9 244 PANTHER PTHR26402:SF292 10 244 2.1E-101 T 26-04-2016 RGE_RS13070 9d2ff3d4d9e1c21b28dc938a4ceecaa9 244 PANTHER PTHR26402 10 244 2.1E-101 T 26-04-2016 RGE_RS13070 9d2ff3d4d9e1c21b28dc938a4ceecaa9 244 SMART SM00448 10 121 1.2E-41 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS13070 9d2ff3d4d9e1c21b28dc938a4ceecaa9 244 SUPERFAMILY SSF52172 5 130 5.12E-41 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS13070 9d2ff3d4d9e1c21b28dc938a4ceecaa9 244 Pfam PF00486 Transcriptional regulatory protein, C terminal 162 238 4.6E-24 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS13070 9d2ff3d4d9e1c21b28dc938a4ceecaa9 244 SMART SM00862 162 238 6.0E-26 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS13070 9d2ff3d4d9e1c21b28dc938a4ceecaa9 244 SUPERFAMILY SSF46894 140 240 7.65E-28 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS21895 736a631c628cca15f7e3df29cb91d551 383 PANTHER PTHR13789:SF214 3 379 4.6E-51 T 26-04-2016 RGE_RS21895 736a631c628cca15f7e3df29cb91d551 383 Pfam PF01494 FAD binding domain 198 315 2.9E-7 T 26-04-2016 IPR002938 FAD-binding domain GO:0071949 RGE_RS21895 736a631c628cca15f7e3df29cb91d551 383 SUPERFAMILY SSF51905 4 179 2.59E-29 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS21895 736a631c628cca15f7e3df29cb91d551 383 SUPERFAMILY SSF51905 263 375 2.59E-29 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS21895 736a631c628cca15f7e3df29cb91d551 383 Gene3D G3DSA:3.50.50.60 4 184 2.9E-22 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS21895 736a631c628cca15f7e3df29cb91d551 383 Gene3D G3DSA:3.50.50.60 264 346 2.9E-22 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS21895 736a631c628cca15f7e3df29cb91d551 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 291 6.7E-11 T 26-04-2016 RGE_RS21895 736a631c628cca15f7e3df29cb91d551 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 307 6.7E-11 T 26-04-2016 RGE_RS21895 736a631c628cca15f7e3df29cb91d551 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 6.7E-11 T 26-04-2016 RGE_RS21895 736a631c628cca15f7e3df29cb91d551 383 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 290 303 - T 26-04-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 RGE_RS21895 736a631c628cca15f7e3df29cb91d551 383 PANTHER PTHR13789 3 379 4.6E-51 T 26-04-2016 RGE_RS19910 ee456d91362d85663e11c9cb2d6239ed 215 Hamap MF_01389 Urease accessory protein UreG [ureG]. 16 214 46.642 T 26-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RGE_RS19910 ee456d91362d85663e11c9cb2d6239ed 215 Gene3D G3DSA:3.40.50.300 17 208 2.3E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19910 ee456d91362d85663e11c9cb2d6239ed 215 SUPERFAMILY SSF52540 16 209 9.69E-36 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19910 ee456d91362d85663e11c9cb2d6239ed 215 PANTHER PTHR31715 17 214 6.3E-123 T 26-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RGE_RS19910 ee456d91362d85663e11c9cb2d6239ed 215 PIRSF PIRSF005624 10 214 8.2E-48 T 26-04-2016 RGE_RS19910 ee456d91362d85663e11c9cb2d6239ed 215 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 18 213 7.0E-99 T 26-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RGE_RS19910 ee456d91362d85663e11c9cb2d6239ed 215 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 20 190 1.3E-38 T 26-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RGE_RS22815 d72317652a4ff7224265648ccddb5cdb 525 PANTHER PTHR12778 277 507 7.2E-99 T 26-04-2016 RGE_RS22815 d72317652a4ff7224265648ccddb5cdb 525 PANTHER PTHR12778 12 205 7.2E-99 T 26-04-2016 RGE_RS22815 d72317652a4ff7224265648ccddb5cdb 525 Pfam PF07690 Major Facilitator Superfamily 19 399 1.8E-10 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS22815 d72317652a4ff7224265648ccddb5cdb 525 SUPERFAMILY SSF103473 11 207 9.59E-22 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS22815 d72317652a4ff7224265648ccddb5cdb 525 SUPERFAMILY SSF103473 421 510 9.59E-22 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS22815 d72317652a4ff7224265648ccddb5cdb 525 SUPERFAMILY SSF103473 286 390 9.59E-22 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS22815 d72317652a4ff7224265648ccddb5cdb 525 Gene3D G3DSA:1.20.1250.20 15 205 5.0E-10 T 26-04-2016 RGE_RS22815 d72317652a4ff7224265648ccddb5cdb 525 Gene3D G3DSA:1.20.1250.20 306 510 7.0E-9 T 26-04-2016 RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 SUPERFAMILY SSF55785 10 115 7.68E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 Pfam PF00563 EAL domain 435 667 4.2E-70 T 26-04-2016 IPR001633 EAL domain RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 Gene3D G3DSA:3.30.70.270 259 420 9.1E-52 T 26-04-2016 RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 Pfam PF13188 PAS domain 133 184 0.0075 T 26-04-2016 IPR000014 PAS domain RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 SMART SM00052 428 673 4.1E-106 T 26-04-2016 IPR001633 EAL domain RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 PANTHER PTHR33121:SF13 431 689 7.7E-85 T 26-04-2016 RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 SMART SM00267 246 418 5.6E-47 T 26-04-2016 IPR000160 GGDEF domain RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 Pfam PF13426 PAS domain 27 117 2.5E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 PANTHER PTHR33121 431 689 7.7E-85 T 26-04-2016 RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 Gene3D G3DSA:3.30.450.20 10 115 3.5E-8 T 26-04-2016 RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 Gene3D G3DSA:3.30.450.20 120 196 4.1E-8 T 26-04-2016 RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 SUPERFAMILY SSF55073 262 419 3.37E-42 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 SMART SM00091 131 202 0.053 T 26-04-2016 IPR000014 PAS domain RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 SMART SM00091 5 72 4.5 T 26-04-2016 IPR000014 PAS domain RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 SUPERFAMILY SSF141868 434 679 2.09E-84 T 26-04-2016 IPR001633 EAL domain RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 254 416 8.1E-40 T 26-04-2016 IPR000160 GGDEF domain RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 SUPERFAMILY SSF55785 115 183 2.44E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 Gene3D G3DSA:3.20.20.450 432 678 3.2E-93 T 26-04-2016 IPR001633 EAL domain RGE_RS21655 daaf4b451055143ee04c18e682f906a1 698 Pfam PF00990 Diguanylate cyclase, GGDEF domain 258 412 4.7E-42 T 26-04-2016 IPR000160 GGDEF domain RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 PANTHER PTHR10229 5 376 1.5E-154 T 26-04-2016 IPR016496 GTPase HflX GO:0005525 RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 Pfam PF01926 50S ribosome-binding GTPase 208 328 1.6E-20 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 PANTHER PTHR10229:SF0 5 376 1.5E-154 T 26-04-2016 RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 SUPERFAMILY SSF52540 206 379 3.4E-40 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 Gene3D G3DSA:3.40.50.300 206 377 2.5E-35 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 PIRSF PIRSF006809 9 389 2.4E-135 T 26-04-2016 IPR016496 GTPase HflX GO:0005525 RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 206 339 4.5E-12 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 Hamap MF_00900 GTPase HflX [hflX]. 35 386 44.259 T 26-04-2016 IPR016496 GTPase HflX GO:0005525 RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 277 295 2.9E-7 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 209 229 2.9E-7 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 Pfam PF13167 GTP-binding GTPase N-terminal 34 120 4.5E-29 T 26-04-2016 IPR025121 GTPase HflX, N-terminal RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 Pfam PF16360 GTP-binding GTPase Middle Region 122 201 6.2E-28 T 26-04-2016 IPR032305 GTP-binding protein, middle domain RGE_RS13375 84833ebb82a76bf27c2ba2d6a1f4d962 389 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 17 375 2.7E-142 T 26-04-2016 IPR016496 GTPase HflX GO:0005525 RGE_RS04630 91c4853bf40af307fbd772269dae941d 320 SUPERFAMILY SSF51069 99 316 1.44E-69 T 26-04-2016 IPR001148 Alpha carbonic anhydrase RGE_RS04630 91c4853bf40af307fbd772269dae941d 320 PANTHER PTHR18952 83 320 2.0E-73 T 26-04-2016 IPR023561 Carbonic anhydrase, alpha-class RGE_RS04630 91c4853bf40af307fbd772269dae941d 320 SMART SM01057 100 320 2.9E-88 T 26-04-2016 IPR001148 Alpha carbonic anhydrase RGE_RS04630 91c4853bf40af307fbd772269dae941d 320 Gene3D G3DSA:3.10.200.10 99 316 1.3E-65 T 26-04-2016 IPR001148 Alpha carbonic anhydrase RGE_RS04630 91c4853bf40af307fbd772269dae941d 320 Pfam PF00194 Eukaryotic-type carbonic anhydrase 99 318 4.6E-41 T 26-04-2016 IPR001148 Alpha carbonic anhydrase RGE_RS08480 c43a31f23d219f946f849eba6edea1ee 240 Pfam PF00460 Flagella basal body rod protein 5 35 3.7E-9 T 26-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RGE_RS08480 c43a31f23d219f946f849eba6edea1ee 240 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 168 236 3.9E-20 T 26-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RGE_RS08480 c43a31f23d219f946f849eba6edea1ee 240 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 218 5.3E-58 T 26-04-2016 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 RGE_RS08480 c43a31f23d219f946f849eba6edea1ee 240 PANTHER PTHR30435 1 238 1.6E-79 T 26-04-2016 RGE_RS08480 c43a31f23d219f946f849eba6edea1ee 240 PANTHER PTHR30435:SF18 1 238 1.6E-79 T 26-04-2016 RGE_RS08480 c43a31f23d219f946f849eba6edea1ee 240 SUPERFAMILY SSF117143 77 199 1.44E-19 T 26-04-2016 RGE_RS08480 c43a31f23d219f946f849eba6edea1ee 240 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 26-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RGE_RS08480 c43a31f23d219f946f849eba6edea1ee 240 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 121 1.2E-36 T 26-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RGE_RS10865 797849a962081137ffd6bbc3aeab3b98 616 Gene3D G3DSA:2.40.160.50 461 616 1.5E-18 T 26-04-2016 RGE_RS10865 797849a962081137ffd6bbc3aeab3b98 616 PANTHER PTHR12815 97 616 3.9E-44 T 26-04-2016 RGE_RS10865 797849a962081137ffd6bbc3aeab3b98 616 PANTHER PTHR12815:SF11 97 616 3.9E-44 T 26-04-2016 RGE_RS10865 797849a962081137ffd6bbc3aeab3b98 616 Pfam PF01103 Surface antigen 410 616 1.2E-28 T 26-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 RGE_RS07420 478726802221f414ba38fea3496d289a 261 PANTHER PTHR34148 1 258 1.0E-52 T 26-04-2016 RGE_RS07420 478726802221f414ba38fea3496d289a 261 PANTHER PTHR34148:SF1 1 258 1.0E-52 T 26-04-2016 RGE_RS07420 478726802221f414ba38fea3496d289a 261 Pfam PF02654 Cobalamin-5-phosphate synthase 11 251 2.3E-51 T 26-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 RGE_RS07420 478726802221f414ba38fea3496d289a 261 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 261 49.731 T 26-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 SUPERFAMILY SSF49313 745 825 1.96E-8 T 26-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 Pfam PF00082 Subtilase family 154 437 5.4E-44 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 PRINTS PR00723 Subtilisin serine protease family (S8) signature 154 173 2.3E-10 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 PRINTS PR00723 Subtilisin serine protease family (S8) signature 212 225 2.3E-10 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 PRINTS PR00723 Subtilisin serine protease family (S8) signature 398 414 2.3E-10 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 SUPERFAMILY SSF52743 144 461 1.24E-66 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 399 409 - T 26-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 PANTHER PTHR10795:SF419 397 475 2.7E-48 T 26-04-2016 RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 PANTHER PTHR10795:SF419 15 198 2.7E-48 T 26-04-2016 RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 PANTHER PTHR10795:SF419 215 371 2.7E-48 T 26-04-2016 RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 PANTHER PTHR10795:SF419 888 908 2.7E-48 T 26-04-2016 RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 216 226 - T 26-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 159 169 - T 26-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 PANTHER PTHR10795 397 475 2.7E-48 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 PANTHER PTHR10795 15 198 2.7E-48 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 PANTHER PTHR10795 215 371 2.7E-48 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 PANTHER PTHR10795 888 908 2.7E-48 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 Pfam PF05345 Putative Ig domain 685 723 2.5E-5 T 26-04-2016 IPR008009 Putative Ig RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 SUPERFAMILY SSF49313 575 648 1.22E-5 T 26-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 Gene3D G3DSA:2.60.40.10 745 825 3.6E-5 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 Gene3D G3DSA:3.40.50.200 116 461 1.1E-71 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS10880 7e1af23ed3a86cf1a0050822c147c120 910 SUPERFAMILY SSF49313 660 737 4.87E-7 T 26-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 RGE_RS13700 4af0e4ad3b378a617d9a7fc5d1e93eb3 132 PANTHER PTHR34299 7 131 8.7E-37 T 26-04-2016 RGE_RS13700 4af0e4ad3b378a617d9a7fc5d1e93eb3 132 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 80 91 - T 26-04-2016 IPR000829 Diacylglycerol kinase, prokaryotic GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 RGE_RS13700 4af0e4ad3b378a617d9a7fc5d1e93eb3 132 Gene3D G3DSA:1.10.3830.10 13 131 3.7E-43 T 26-04-2016 RGE_RS13700 4af0e4ad3b378a617d9a7fc5d1e93eb3 132 PANTHER PTHR34299:SF1 7 131 8.7E-37 T 26-04-2016 RGE_RS13700 4af0e4ad3b378a617d9a7fc5d1e93eb3 132 Pfam PF01219 Prokaryotic diacylglycerol kinase 27 124 1.6E-33 T 26-04-2016 IPR000829 Diacylglycerol kinase, prokaryotic GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 RGE_RS13645 c5246dffdd6b91f1d74112568a99fa26 255 PANTHER PTHR30136:SF7 1 255 1.9E-63 T 26-04-2016 RGE_RS13645 c5246dffdd6b91f1d74112568a99fa26 255 Pfam PF09339 IclR helix-turn-helix domain 14 60 1.6E-15 T 26-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RGE_RS13645 c5246dffdd6b91f1d74112568a99fa26 255 Gene3D G3DSA:1.10.10.10 10 80 2.7E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13645 c5246dffdd6b91f1d74112568a99fa26 255 Pfam PF01614 Bacterial transcriptional regulator 129 249 2.0E-33 T 26-04-2016 IPR014757 Transcription regulator IclR, C-terminal RGE_RS13645 c5246dffdd6b91f1d74112568a99fa26 255 SUPERFAMILY SSF55781 68 254 1.05E-46 T 26-04-2016 IPR029016 GAF domain-like RGE_RS13645 c5246dffdd6b91f1d74112568a99fa26 255 SMART SM00346 11 100 9.6E-27 T 26-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RGE_RS13645 c5246dffdd6b91f1d74112568a99fa26 255 Gene3D G3DSA:3.30.450.40 81 254 4.9E-53 T 26-04-2016 IPR029016 GAF domain-like RGE_RS13645 c5246dffdd6b91f1d74112568a99fa26 255 SUPERFAMILY SSF46785 11 82 6.17E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13645 c5246dffdd6b91f1d74112568a99fa26 255 PANTHER PTHR30136 1 255 1.9E-63 T 26-04-2016 RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 12 522 9.6E-258 T 26-04-2016 IPR010222 RNA helicase HrpA GO:0004004 RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 Pfam PF11898 Domain of unknown function (DUF3418) 695 1312 6.2E-216 T 26-04-2016 IPR024590 RNA helicase HrpA, C-terminal RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 Pfam PF00270 DEAD/DEAH box helicase 32 182 3.0E-6 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 SMART SM00487 20 212 3.7E-26 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 PANTHER PTHR18934:SF109 21 516 2.0E-296 T 26-04-2016 RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 Gene3D G3DSA:3.40.50.300 21 183 2.2E-47 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 SMART SM00490 254 360 4.4E-15 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 SMART SM00382 37 326 1.4E-5 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 PANTHER PTHR18934:SF109 547 685 2.0E-296 T 26-04-2016 RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 Pfam PF04408 Helicase associated domain (HA2) 424 489 2.9E-17 T 26-04-2016 IPR007502 Helicase-associated domain GO:0004386 RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 PANTHER PTHR18934 547 685 2.0E-296 T 26-04-2016 RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 PANTHER PTHR18934 21 516 2.0E-296 T 26-04-2016 RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 PANTHER PTHR18934 722 850 2.0E-296 T 26-04-2016 RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 SUPERFAMILY SSF52540 19 518 3.88E-97 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 SMART SM00847 420 510 2.9E-31 T 26-04-2016 IPR007502 Helicase-associated domain GO:0004386 RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 Pfam PF00271 Helicase conserved C-terminal domain 237 359 1.3E-9 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 Gene3D G3DSA:3.40.50.300 227 378 1.8E-12 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 562 682 1.4E-11 T 26-04-2016 IPR011709 Domain of unknown function DUF1605 RGE_RS13110 301421f65ede6fa7a4006e317eefff61 1315 PANTHER PTHR18934:SF109 722 850 2.0E-296 T 26-04-2016 RGE_RS22655 e3cbd639799910928a1cd604a87ab4c8 160 SUPERFAMILY SSF55040 12 156 1.83E-59 T 26-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 RGE_RS22655 e3cbd639799910928a1cd604a87ab4c8 160 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 5 153 4.7E-61 T 26-04-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 UniPathway: UPA00344 RGE_RS22655 e3cbd639799910928a1cd604a87ab4c8 160 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 3 159 35.969 T 26-04-2016 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type UniPathway: UPA00344 RGE_RS22655 e3cbd639799910928a1cd604a87ab4c8 160 Pfam PF01967 MoaC family 16 151 2.6E-54 T 26-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 RGE_RS22655 e3cbd639799910928a1cd604a87ab4c8 160 PANTHER PTHR22960 2 159 1.7E-93 T 26-04-2016 RGE_RS22655 e3cbd639799910928a1cd604a87ab4c8 160 Gene3D G3DSA:3.30.70.640 5 158 5.9E-68 T 26-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 Gene3D G3DSA:3.40.50.920 717 899 6.1E-75 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 SUPERFAMILY SSF52518 483 710 2.24E-92 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 SUPERFAMILY SSF52922 713 899 1.92E-56 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 PANTHER PTHR11624 564 778 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 PANTHER PTHR11624 372 463 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 PANTHER PTHR11624 797 882 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 PANTHER PTHR11624 491 546 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 PANTHER PTHR11624 80 303 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 PANTHER PTHR11624:SF67 564 778 0.0 T 26-04-2016 RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 PANTHER PTHR11624:SF67 372 463 0.0 T 26-04-2016 RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 PANTHER PTHR11624:SF67 797 882 0.0 T 26-04-2016 RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 PANTHER PTHR11624:SF67 491 546 0.0 T 26-04-2016 RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 PANTHER PTHR11624:SF67 80 303 0.0 T 26-04-2016 RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 SUPERFAMILY SSF52518 63 476 7.23E-138 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 13 899 0.0 T 26-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 Gene3D G3DSA:3.40.50.970 482 713 4.2E-111 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 367 435 3.1E-6 T 26-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 92 302 2.6E-9 T 26-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 Gene3D G3DSA:3.40.50.970 63 476 7.4E-153 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS11525 eeb5a8ce2d2556c80dc7f4da0c54c01a 900 PIRSF PIRSF000156 3 900 0.0 T 26-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RGE_RS06335 db7766a23271b9c0f820ebd2b2db0511 146 Pfam PF00293 NUDIX domain 13 122 6.1E-18 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS06335 db7766a23271b9c0f820ebd2b2db0511 146 SUPERFAMILY SSF55811 6 132 5.69E-25 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS06335 db7766a23271b9c0f820ebd2b2db0511 146 Gene3D G3DSA:3.90.79.10 8 133 8.8E-27 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS06335 db7766a23271b9c0f820ebd2b2db0511 146 PANTHER PTHR22769:SF14 1 118 1.4E-17 T 26-04-2016 RGE_RS06335 db7766a23271b9c0f820ebd2b2db0511 146 PANTHER PTHR22769 1 118 1.4E-17 T 26-04-2016 RGE_RS06335 db7766a23271b9c0f820ebd2b2db0511 146 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 26-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 Gene3D G3DSA:1.10.287.950 281 486 1.2E-63 T 26-04-2016 RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 SMART SM00283 267 514 2.7E-96 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 SUPERFAMILY SSF58104 234 515 1.44E-76 T 26-04-2016 RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 Pfam PF12729 Four helix bundle sensory module for signal transduction 8 186 8.7E-17 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 Pfam PF00672 HAMP domain 196 262 1.2E-13 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 6.1E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 6.1E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 6.1E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 6.1E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 PANTHER PTHR32089 149 517 2.5E-153 T 26-04-2016 RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 SMART SM00304 214 266 2.2E-12 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 PANTHER PTHR32089:SF63 149 517 2.5E-153 T 26-04-2016 RGE_RS16740 f33f15bb0180d3d3ae14e9ab79e0d88a 524 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 322 513 7.9E-63 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS22325 c21cef4000192229771170428266e46a 442 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 4 422 3.8E-145 T 26-04-2016 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|UniPathway: UPA00578 RGE_RS22325 c21cef4000192229771170428266e46a 442 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 349 422 9.4E-18 T 26-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RGE_RS22325 c21cef4000192229771170428266e46a 442 Gene3D G3DSA:3.40.1030.10 76 331 4.0E-101 T 26-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RGE_RS22325 c21cef4000192229771170428266e46a 442 Pfam PF00591 Glycosyl transferase family, a/b domain 81 310 3.9E-39 T 26-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RGE_RS22325 c21cef4000192229771170428266e46a 442 Gene3D G3DSA:1.20.970.10 1 71 2.6E-23 T 26-04-2016 RGE_RS22325 c21cef4000192229771170428266e46a 442 SUPERFAMILY SSF47648 2 73 5.76E-15 T 26-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RGE_RS22325 c21cef4000192229771170428266e46a 442 SUPERFAMILY SSF54680 336 437 5.1E-27 T 26-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RGE_RS22325 c21cef4000192229771170428266e46a 442 PANTHER PTHR10515 1 441 4.0E-173 T 26-04-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 RGE_RS22325 c21cef4000192229771170428266e46a 442 Gene3D G3DSA:3.90.1170.30 336 431 3.0E-30 T 26-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RGE_RS22325 c21cef4000192229771170428266e46a 442 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 114 129 - T 26-04-2016 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 RGE_RS22325 c21cef4000192229771170428266e46a 442 PIRSF PIRSF000478 1 438 5.4E-146 T 26-04-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 RGE_RS22325 c21cef4000192229771170428266e46a 442 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 70 1.1E-14 T 26-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RGE_RS22325 c21cef4000192229771170428266e46a 442 SMART SM00941 349 423 1.7E-20 T 26-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RGE_RS22325 c21cef4000192229771170428266e46a 442 SUPERFAMILY SSF52418 74 331 1.06E-83 T 26-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RGE_RS22325 c21cef4000192229771170428266e46a 442 PANTHER PTHR10515:SF0 1 441 4.0E-173 T 26-04-2016 RGE_RS06605 10520922f1ae3606a7ab55874f3652b6 177 SUPERFAMILY SSF55729 6 168 5.06E-32 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06605 10520922f1ae3606a7ab55874f3652b6 177 PANTHER PTHR23091 6 143 6.2E-37 T 26-04-2016 RGE_RS06605 10520922f1ae3606a7ab55874f3652b6 177 Pfam PF13420 Acetyltransferase (GNAT) domain 8 160 1.9E-22 T 26-04-2016 RGE_RS06605 10520922f1ae3606a7ab55874f3652b6 177 PANTHER PTHR23091:SF183 6 143 6.2E-37 T 26-04-2016 RGE_RS06605 10520922f1ae3606a7ab55874f3652b6 177 Gene3D G3DSA:3.40.630.30 5 173 6.4E-42 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS04405 a823a79113590c6e69ce3e9db2652311 311 Pfam PF03466 LysR substrate binding domain 103 305 2.4E-38 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS04405 a823a79113590c6e69ce3e9db2652311 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 18 77 2.5E-21 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04405 a823a79113590c6e69ce3e9db2652311 311 SUPERFAMILY SSF53850 103 308 1.3E-37 T 26-04-2016 RGE_RS04405 a823a79113590c6e69ce3e9db2652311 311 Gene3D G3DSA:1.10.10.10 17 99 5.7E-27 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04405 a823a79113590c6e69ce3e9db2652311 311 Gene3D G3DSA:3.40.190.10 191 275 3.0E-17 T 26-04-2016 RGE_RS04405 a823a79113590c6e69ce3e9db2652311 311 SUPERFAMILY SSF46785 16 125 3.0E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04405 a823a79113590c6e69ce3e9db2652311 311 Gene3D G3DSA:3.40.190.10 106 190 6.0E-16 T 26-04-2016 RGE_RS04405 a823a79113590c6e69ce3e9db2652311 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 54 65 6.3E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04405 a823a79113590c6e69ce3e9db2652311 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 44 6.3E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04405 a823a79113590c6e69ce3e9db2652311 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 54 6.3E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04405 a823a79113590c6e69ce3e9db2652311 311 PANTHER PTHR30537 10 311 6.2E-85 T 26-04-2016 RGE_RS17190 04aef4edbec655eb62fb17ee5cfb89fe 275 SUPERFAMILY SSF52402 151 274 1.53E-19 T 26-04-2016 RGE_RS17190 04aef4edbec655eb62fb17ee5cfb89fe 275 PRINTS PR01438 Universal stress protein signature 235 247 2.5E-11 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS17190 04aef4edbec655eb62fb17ee5cfb89fe 275 PRINTS PR01438 Universal stress protein signature 253 275 2.5E-11 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS17190 04aef4edbec655eb62fb17ee5cfb89fe 275 PRINTS PR01438 Universal stress protein signature 1 16 2.5E-11 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS17190 04aef4edbec655eb62fb17ee5cfb89fe 275 Gene3D G3DSA:3.40.50.620 138 274 2.5E-17 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS17190 04aef4edbec655eb62fb17ee5cfb89fe 275 Gene3D G3DSA:3.40.50.620 1 137 2.2E-10 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS17190 04aef4edbec655eb62fb17ee5cfb89fe 275 SUPERFAMILY SSF52402 1 144 3.7E-14 T 26-04-2016 RGE_RS17190 04aef4edbec655eb62fb17ee5cfb89fe 275 Pfam PF00582 Universal stress protein family 208 274 2.6E-8 T 26-04-2016 IPR006016 UspA GO:0006950 RGE_RS17190 04aef4edbec655eb62fb17ee5cfb89fe 275 Pfam PF00582 Universal stress protein family 2 144 3.1E-8 T 26-04-2016 IPR006016 UspA GO:0006950 RGE_RS11595 7814cc3bf4181a9c0429e3e3b9a4bb37 262 Pfam PF09955 Predicted integral membrane protein (DUF2189) 67 189 6.2E-35 T 26-04-2016 IPR018692 Predicted integral membrane protein DUF2189 RGE_RS12225 53ea8a6bbc17898c9aaed4b6bc399faa 359 Gene3D G3DSA:3.30.870.10 199 335 2.1E-23 T 26-04-2016 RGE_RS12225 53ea8a6bbc17898c9aaed4b6bc399faa 359 Pfam PF13091 PLD-like domain 209 330 7.4E-15 T 26-04-2016 IPR025202 Phospholipase D-like domain RGE_RS12225 53ea8a6bbc17898c9aaed4b6bc399faa 359 PANTHER PTHR21248:SF5 4 335 4.0E-27 T 26-04-2016 RGE_RS12225 53ea8a6bbc17898c9aaed4b6bc399faa 359 SUPERFAMILY SSF56024 4 183 1.35E-19 T 26-04-2016 RGE_RS12225 53ea8a6bbc17898c9aaed4b6bc399faa 359 PANTHER PTHR21248 4 335 4.0E-27 T 26-04-2016 RGE_RS12225 53ea8a6bbc17898c9aaed4b6bc399faa 359 Gene3D G3DSA:3.30.870.10 4 183 8.4E-17 T 26-04-2016 RGE_RS12225 53ea8a6bbc17898c9aaed4b6bc399faa 359 SUPERFAMILY SSF56024 156 346 1.08E-24 T 26-04-2016 RGE_RS05380 f5c00d0dbf9616228071775335acdfbe 269 SUPERFAMILY SSF56219 21 266 6.15E-42 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS05380 f5c00d0dbf9616228071775335acdfbe 269 PANTHER PTHR15822:SF7 11 267 3.8E-34 T 26-04-2016 RGE_RS05380 f5c00d0dbf9616228071775335acdfbe 269 PANTHER PTHR15822 11 267 3.8E-34 T 26-04-2016 RGE_RS05380 f5c00d0dbf9616228071775335acdfbe 269 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 24 259 1.7E-14 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS05380 f5c00d0dbf9616228071775335acdfbe 269 Gene3D G3DSA:3.60.10.10 21 200 6.5E-16 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS16165 dfa4ea5cdd5509b8975f358c8c981a07 163 Pfam PF02469 Fasciclin domain 41 160 1.4E-34 T 26-04-2016 IPR000782 FAS1 domain RGE_RS16165 dfa4ea5cdd5509b8975f358c8c981a07 163 Gene3D G3DSA:2.30.180.10 30 161 7.7E-40 T 26-04-2016 IPR000782 FAS1 domain RGE_RS16165 dfa4ea5cdd5509b8975f358c8c981a07 163 SUPERFAMILY SSF82153 20 161 1.83E-41 T 26-04-2016 IPR000782 FAS1 domain RGE_RS16165 dfa4ea5cdd5509b8975f358c8c981a07 163 PANTHER PTHR10900 31 161 6.4E-52 T 26-04-2016 RGE_RS16165 dfa4ea5cdd5509b8975f358c8c981a07 163 SMART SM00554 65 161 1.6E-33 T 26-04-2016 IPR000782 FAS1 domain RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 128 4.9E-51 T 26-04-2016 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 Gene3D G3DSA:2.30.40.10 77 144 1.7E-12 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 Hamap MF_01953 Urease subunit alpha [ureC]. 3 576 55.82 T 26-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 SUPERFAMILY SSF51338 4 186 1.56E-55 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 PANTHER PTHR22642 15 305 4.9E-246 T 26-04-2016 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 PANTHER PTHR22642 329 510 4.9E-246 T 26-04-2016 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 5 576 1.3E-283 T 26-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 436 449 1.3E-33 T 26-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 304 321 1.3E-33 T 26-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 410 425 1.3E-33 T 26-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 343 359 1.3E-33 T 26-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 PANTHER PTHR22642:SF7 15 305 4.9E-246 T 26-04-2016 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 PANTHER PTHR22642:SF7 329 510 4.9E-246 T 26-04-2016 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 SUPERFAMILY SSF51338 431 486 5.29E-7 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 SUPERFAMILY SSF51556 138 441 4.09E-195 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 SUPERFAMILY SSF51556 490 576 4.09E-195 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 ProSitePatterns PS00145 Urease active site. 326 342 - T 26-04-2016 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 Pfam PF01979 Amidohydrolase family 134 462 3.0E-76 T 26-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 ProSitePatterns PS01120 Urease nickel ligands signature. 136 149 - T 26-04-2016 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 Gene3D G3DSA:3.20.20.140 145 438 4.2E-209 T 26-04-2016 RGE_RS19575 8e786c46b3848acdae699f774a5d9918 576 Gene3D G3DSA:3.20.20.140 497 574 4.2E-209 T 26-04-2016 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 27 237 1.2E-28 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 PANTHER PTHR30385 25 239 1.2E-34 T 26-04-2016 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 SUPERFAMILY SSF88946 25 99 4.91E-15 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 PRINTS PR00046 Major sigma-70 factor signature 223 234 1.2E-9 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 PRINTS PR00046 Major sigma-70 factor signature 208 223 1.2E-9 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 PRINTS PR00046 Major sigma-70 factor signature 191 203 1.2E-9 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 PRINTS PR00046 Major sigma-70 factor signature 55 68 1.2E-9 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 Gene3D G3DSA:1.10.10.10 182 238 2.8E-12 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 29 237 3.4E-66 T 26-04-2016 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 PANTHER PTHR30385:SF7 25 239 1.2E-34 T 26-04-2016 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 SUPERFAMILY SSF88659 170 239 2.62E-16 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 SUPERFAMILY SSF88659 101 163 2.05E-12 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 Gene3D G3DSA:1.10.10.10 101 149 7.6E-10 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 Pfam PF04545 Sigma-70, region 4 187 235 1.4E-13 T 26-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 Pfam PF04542 Sigma-70 region 2 29 100 5.6E-10 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09615 488ef8b645d0429ee406d0a353c877c2 241 Pfam PF04539 Sigma-70 region 3 110 151 1.4E-7 T 26-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS21135 10f1ede05fd8ed2d7d658d9ce9bdbd6f 578 Pfam PF00474 Sodium:solute symporter family 74 495 3.0E-114 T 26-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RGE_RS21135 10f1ede05fd8ed2d7d658d9ce9bdbd6f 578 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 74 495 2.3E-59 T 26-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RGE_RS21135 10f1ede05fd8ed2d7d658d9ce9bdbd6f 578 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 189 214 - T 26-04-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 RGE_RS21135 10f1ede05fd8ed2d7d658d9ce9bdbd6f 578 PANTHER PTHR11819:SF13 43 567 2.6E-256 T 26-04-2016 RGE_RS21135 10f1ede05fd8ed2d7d658d9ce9bdbd6f 578 PANTHER PTHR11819 43 567 2.6E-256 T 26-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RGE_RS15505 0126a92e1011859b82cfeeeab3e9253d 247 Pfam PF13545 Crp-like helix-turn-helix domain 165 239 6.5E-21 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS15505 0126a92e1011859b82cfeeeab3e9253d 247 SMART SM00419 184 232 4.7E-14 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS15505 0126a92e1011859b82cfeeeab3e9253d 247 Gene3D G3DSA:2.60.120.10 17 167 5.6E-28 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS15505 0126a92e1011859b82cfeeeab3e9253d 247 PANTHER PTHR24567 17 239 7.3E-70 T 26-04-2016 RGE_RS15505 0126a92e1011859b82cfeeeab3e9253d 247 SUPERFAMILY SSF51206 20 159 1.57E-30 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS15505 0126a92e1011859b82cfeeeab3e9253d 247 SMART SM00100 27 145 5.2E-16 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS15505 0126a92e1011859b82cfeeeab3e9253d 247 PANTHER PTHR24567:SF28 17 239 7.3E-70 T 26-04-2016 RGE_RS15505 0126a92e1011859b82cfeeeab3e9253d 247 Pfam PF00027 Cyclic nucleotide-binding domain 46 130 5.6E-16 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS15505 0126a92e1011859b82cfeeeab3e9253d 247 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 190 206 3.7E-10 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS15505 0126a92e1011859b82cfeeeab3e9253d 247 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 206 221 3.7E-10 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS15505 0126a92e1011859b82cfeeeab3e9253d 247 Gene3D G3DSA:1.10.10.10 168 241 2.8E-28 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS15505 0126a92e1011859b82cfeeeab3e9253d 247 SUPERFAMILY SSF46785 163 240 1.2E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18150 f7827e67bfcd6f7d99d274a933c71ae8 437 PANTHER PTHR28004:SF1 16 431 1.3E-76 T 26-04-2016 RGE_RS18150 f7827e67bfcd6f7d99d274a933c71ae8 437 PANTHER PTHR28004 16 431 1.3E-76 T 26-04-2016 RGE_RS18150 f7827e67bfcd6f7d99d274a933c71ae8 437 Gene3D G3DSA:3.20.20.10 140 267 3.5E-5 T 26-04-2016 IPR029066 PLP-binding barrel RGE_RS18150 f7827e67bfcd6f7d99d274a933c71ae8 437 SUPERFAMILY SSF51419 54 272 3.6E-19 T 26-04-2016 IPR029066 PLP-binding barrel RGE_RS18150 f7827e67bfcd6f7d99d274a933c71ae8 437 Pfam PF14031 Putative serine dehydratase domain 324 423 3.9E-15 T 26-04-2016 IPR026956 D-serine dehydratase-like domain RGE_RS18150 f7827e67bfcd6f7d99d274a933c71ae8 437 Pfam PF01168 Alanine racemase, N-terminal domain 54 219 1.1E-7 T 26-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS18150 f7827e67bfcd6f7d99d274a933c71ae8 437 SMART SM01119 324 424 1.7E-31 T 26-04-2016 IPR026956 D-serine dehydratase-like domain RGE_RS07625 f495bf953ee9982bb61738d85a0ed7ad 89 Gene3D G3DSA:1.10.287.10 4 89 1.5E-36 T 26-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 RGE_RS07625 f495bf953ee9982bb61738d85a0ed7ad 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 2.0E-30 T 26-04-2016 RGE_RS07625 f495bf953ee9982bb61738d85a0ed7ad 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 9.1E-36 T 26-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 RGE_RS07625 f495bf953ee9982bb61738d85a0ed7ad 89 SMART SM01387 8 88 4.3E-50 T 26-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS07625 f495bf953ee9982bb61738d85a0ed7ad 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 26-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS07625 f495bf953ee9982bb61738d85a0ed7ad 89 SUPERFAMILY SSF47060 3 89 3.24E-33 T 26-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 RGE_RS07625 f495bf953ee9982bb61738d85a0ed7ad 89 PANTHER PTHR23321 1 88 4.4E-40 T 26-04-2016 RGE_RS07625 f495bf953ee9982bb61738d85a0ed7ad 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.008 T 26-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 RGE_RS07625 f495bf953ee9982bb61738d85a0ed7ad 89 Pfam PF00312 Ribosomal protein S15 8 88 2.0E-34 T 26-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01925 cabf0447c6803aead71075db08ca5b21 286 PANTHER PTHR30024 5 252 1.9E-39 T 26-04-2016 RGE_RS01925 cabf0447c6803aead71075db08ca5b21 286 Gene3D G3DSA:3.40.190.10 118 230 1.1E-11 T 26-04-2016 RGE_RS01925 cabf0447c6803aead71075db08ca5b21 286 PANTHER PTHR30024:SF17 5 252 1.9E-39 T 26-04-2016 RGE_RS01925 cabf0447c6803aead71075db08ca5b21 286 TIGRFAM TIGR04553 ABC_peri_selen: putative selenate ABC transporter periplasmic binding protein 29 286 6.0E-121 T 26-04-2016 IPR030836 Putative selenate ABC transporter periplasmic binding protein RGE_RS01925 cabf0447c6803aead71075db08ca5b21 286 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 33 273 1.5E-68 T 26-04-2016 RGE_RS01925 cabf0447c6803aead71075db08ca5b21 286 SUPERFAMILY SSF53850 52 235 6.86E-32 T 26-04-2016 RGE_RS01925 cabf0447c6803aead71075db08ca5b21 286 SMART SM00062 29 259 0.0073 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS01925 cabf0447c6803aead71075db08ca5b21 286 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 11 246 7.3E-66 T 26-04-2016 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 RGE_RS01925 cabf0447c6803aead71075db08ca5b21 286 Gene3D G3DSA:3.40.190.10 51 101 0.001 T 26-04-2016 RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 Pfam PF00158 Sigma-54 interaction domain 335 498 2.7E-64 T 26-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 Pfam PF01590 GAF domain 85 209 1.5E-7 T 26-04-2016 IPR003018 GAF domain GO:0005515 RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 355 368 - T 26-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 Gene3D G3DSA:3.40.50.300 335 504 1.0E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 Gene3D G3DSA:1.10.10.60 587 637 1.1E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 SUPERFAMILY SSF55781 67 212 2.43E-9 T 26-04-2016 IPR029016 GAF domain-like RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 SUPERFAMILY SSF46689 541 637 1.66E-11 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 SMART SM00382 351 495 1.2E-12 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 418 433 - T 26-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 Gene3D G3DSA:3.30.450.40 166 212 3.6E-4 T 26-04-2016 IPR029016 GAF domain-like RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 PANTHER PTHR32071 333 638 9.5E-122 T 26-04-2016 RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 618 638 2.4E-9 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 601 618 2.4E-9 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 541 550 - T 26-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 SUPERFAMILY SSF52540 335 571 1.06E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 Pfam PF02954 Bacterial regulatory protein, Fis family 604 635 4.5E-12 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 PANTHER PTHR32071:SF5 333 638 9.5E-122 T 26-04-2016 RGE_RS17385 f287bfab2f87d91553ef224db274fab9 638 Gene3D G3DSA:1.10.8.60 507 578 1.9E-10 T 26-04-2016 RGE_RS06845 f949e5c11789ce3fdbdd08623433401d 220 Gene3D G3DSA:1.10.150.240 21 83 2.8E-9 T 26-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RGE_RS06845 f949e5c11789ce3fdbdd08623433401d 220 PANTHER PTHR18901:SF24 1 218 6.4E-82 T 26-04-2016 RGE_RS06845 f949e5c11789ce3fdbdd08623433401d 220 PANTHER PTHR18901 1 218 6.4E-82 T 26-04-2016 RGE_RS06845 f949e5c11789ce3fdbdd08623433401d 220 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 7 214 3.6E-53 T 26-04-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 RGE_RS06845 f949e5c11789ce3fdbdd08623433401d 220 Gene3D G3DSA:3.40.50.1000 3 20 9.1E-39 T 26-04-2016 IPR023214 HAD-like domain RGE_RS06845 f949e5c11789ce3fdbdd08623433401d 220 Gene3D G3DSA:3.40.50.1000 84 217 9.1E-39 T 26-04-2016 IPR023214 HAD-like domain RGE_RS06845 f949e5c11789ce3fdbdd08623433401d 220 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 101 181 4.4E-9 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS06845 f949e5c11789ce3fdbdd08623433401d 220 SUPERFAMILY SSF56784 6 217 5.7E-54 T 26-04-2016 IPR023214 HAD-like domain RGE_RS06845 f949e5c11789ce3fdbdd08623433401d 220 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 186 1.3E-29 T 26-04-2016 IPR023214 HAD-like domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Pfam PF00072 Response regulator receiver domain 921 1034 2.1E-24 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Gene3D G3DSA:3.40.50.2300 917 1042 4.3E-41 T 26-04-2016 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Gene3D G3DSA:3.30.450.20 406 523 1.3E-22 T 26-04-2016 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Pfam PF08447 PAS fold 173 259 3.0E-17 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Pfam PF08448 PAS fold 302 409 4.7E-14 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SUPERFAMILY SSF55785 532 651 3.24E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 28 144 7.7E-18 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 420 539 1.7E-12 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 292 415 1.6E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 PRINTS PR00344 Bacterial sensor protein C-terminal signature 853 871 7.3E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 PRINTS PR00344 Bacterial sensor protein C-terminal signature 877 890 7.3E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 PRINTS PR00344 Bacterial sensor protein C-terminal signature 818 832 7.3E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SUPERFAMILY SSF55785 421 522 6.56E-23 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SUPERFAMILY SSF55785 34 145 2.51E-21 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SUPERFAMILY SSF55785 158 268 2.09E-20 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SUPERFAMILY SSF47384 652 732 1.31E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SUPERFAMILY SSF55785 263 406 2.27E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SMART SM00091 539 607 32.0 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SMART SM00091 295 361 0.3 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SMART SM00091 420 486 2.3E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SMART SM00091 23 91 2.6E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SMART SM00091 150 218 2.7 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SUPERFAMILY SSF52172 917 1041 9.39E-38 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 PANTHER PTHR24423 131 280 5.1E-171 T 26-04-2016 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 PANTHER PTHR24423 418 532 5.1E-171 T 26-04-2016 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 PANTHER PTHR24423 652 1040 5.1E-171 T 26-04-2016 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Gene3D G3DSA:3.30.450.20 133 276 1.1E-32 T 26-04-2016 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 777 891 5.6E-22 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Pfam PF13426 PAS domain 431 532 1.8E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Pfam PF13426 PAS domain 37 137 3.7E-12 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Gene3D G3DSA:3.30.450.20 286 405 5.9E-16 T 26-04-2016 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Gene3D G3DSA:3.30.450.20 533 652 4.1E-7 T 26-04-2016 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Pfam PF13188 PAS domain 541 578 0.012 T 26-04-2016 IPR000014 PAS domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SMART SM00086 492 534 1.8E-4 T 26-04-2016 IPR001610 PAC motif RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SMART SM00086 97 138 0.0012 T 26-04-2016 IPR001610 PAC motif RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SMART SM00086 366 408 230.0 T 26-04-2016 IPR001610 PAC motif RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SMART SM00086 223 265 2.0E-8 T 26-04-2016 IPR001610 PAC motif RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Gene3D G3DSA:3.30.450.20 27 132 5.4E-22 T 26-04-2016 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Pfam PF00512 His Kinase A (phospho-acceptor) domain 666 731 1.8E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SMART SM00388 666 731 4.3E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SUPERFAMILY SSF55874 720 888 3.54E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Gene3D G3DSA:1.10.287.130 659 727 1.0E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 Gene3D G3DSA:3.30.565.10 732 895 3.3E-38 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SMART SM00387 777 893 1.1E-28 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23285 92ed3afc7c2b08abb39d7cc2433689ba 1043 SMART SM00448 919 1034 4.6E-35 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1036 0.0 T 26-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 SUPERFAMILY SSF82693 809 857 6.8E-26 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 PANTHER PTHR32063:SF13 1 1034 0.0 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 SUPERFAMILY SSF82693 571 672 6.28E-24 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 SUPERFAMILY SSF82693 38 131 2.44E-27 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 SUPERFAMILY SSF82693 673 722 6.8E-26 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 Gene3D G3DSA:3.30.2090.10 723 810 2.1E-23 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 Gene3D G3DSA:1.10.3850.10 279 498 1.3E-59 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 Gene3D G3DSA:1.10.3850.10 815 1027 6.9E-57 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 SUPERFAMILY SSF82866 832 1026 1.31E-43 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 SUPERFAMILY SSF82714 723 810 3.14E-20 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 PANTHER PTHR32063 1 1034 0.0 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 Gene3D G3DSA:3.30.70.1430 573 672 1.1E-25 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 Gene3D G3DSA:3.30.2090.10 182 275 1.5E-27 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.6E-107 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.6E-107 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.6E-107 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.6E-107 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.6E-107 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.6E-107 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 2.6E-107 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.6E-107 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 PRINTS PR00702 Acriflavin resistance protein family signature 558 575 2.6E-107 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 SUPERFAMILY SSF82866 296 496 1.31E-49 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 SUPERFAMILY SSF82714 183 271 1.83E-22 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 SUPERFAMILY SSF82693 135 182 1.31E-22 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 SUPERFAMILY SSF82693 274 330 1.31E-22 T 26-04-2016 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS04435 9340f80d54e9516a34d962062f39da08 1044 Gene3D G3DSA:3.30.70.1430 38 139 2.2E-34 T 26-04-2016 RGE_RS20525 40faedd02aea168d8e5385c0a36a3ba9 130 SMART SM00448 9 122 2.3E-35 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS20525 40faedd02aea168d8e5385c0a36a3ba9 130 SUPERFAMILY SSF52172 6 127 8.4E-36 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS20525 40faedd02aea168d8e5385c0a36a3ba9 130 Pfam PF00072 Response regulator receiver domain 11 122 2.3E-26 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS20525 40faedd02aea168d8e5385c0a36a3ba9 130 Gene3D G3DSA:3.40.50.2300 7 127 1.6E-36 T 26-04-2016 RGE_RS20525 40faedd02aea168d8e5385c0a36a3ba9 130 PANTHER PTHR26402:SF568 9 125 1.3E-65 T 26-04-2016 RGE_RS20525 40faedd02aea168d8e5385c0a36a3ba9 130 PANTHER PTHR26402 9 125 1.3E-65 T 26-04-2016 RGE_RS09350 96bb62093c9105a574b4243a57f14154 275 PANTHER PTHR30294 8 227 3.1E-44 T 26-04-2016 RGE_RS09350 96bb62093c9105a574b4243a57f14154 275 Pfam PF12679 ABC-2 family transporter protein 12 274 3.6E-39 T 26-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 RGE_RS09350 96bb62093c9105a574b4243a57f14154 275 PANTHER PTHR30294:SF26 8 227 3.1E-44 T 26-04-2016 RGE_RS18960 50b7d1cdd68bee6558458c7fe01b33aa 338 Pfam PF02371 Transposase IS116/IS110/IS902 family 212 288 1.3E-25 T 26-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RGE_RS18960 50b7d1cdd68bee6558458c7fe01b33aa 338 Pfam PF01548 Transposase 6 150 5.1E-11 T 26-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RGE_RS18960 50b7d1cdd68bee6558458c7fe01b33aa 338 PANTHER PTHR33055:SF2 2 336 4.6E-128 T 26-04-2016 RGE_RS18960 50b7d1cdd68bee6558458c7fe01b33aa 338 PANTHER PTHR33055 2 336 4.6E-128 T 26-04-2016 RGE_RS05835 50b7d1cdd68bee6558458c7fe01b33aa 338 Pfam PF02371 Transposase IS116/IS110/IS902 family 212 288 1.3E-25 T 26-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RGE_RS05835 50b7d1cdd68bee6558458c7fe01b33aa 338 Pfam PF01548 Transposase 6 150 5.1E-11 T 26-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RGE_RS05835 50b7d1cdd68bee6558458c7fe01b33aa 338 PANTHER PTHR33055:SF2 2 336 4.6E-128 T 26-04-2016 RGE_RS05835 50b7d1cdd68bee6558458c7fe01b33aa 338 PANTHER PTHR33055 2 336 4.6E-128 T 26-04-2016 RGE_RS12830 0cdaa28bffcf3db31bbcd9f34522cba9 289 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 51 91 - T 26-04-2016 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 RGE_RS12830 0cdaa28bffcf3db31bbcd9f34522cba9 289 TIGRFAM TIGR01694 MTAP: methylthioadenosine phosphorylase 5 240 2.8E-91 T 26-04-2016 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 RGE_RS12830 0cdaa28bffcf3db31bbcd9f34522cba9 289 SUPERFAMILY SSF53167 4 269 7.93E-93 T 26-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RGE_RS12830 0cdaa28bffcf3db31bbcd9f34522cba9 289 Pfam PF01048 Phosphorylase superfamily 4 239 5.9E-44 T 26-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RGE_RS12830 0cdaa28bffcf3db31bbcd9f34522cba9 289 Gene3D G3DSA:3.40.50.1580 4 264 5.8E-90 T 26-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RGE_RS12830 0cdaa28bffcf3db31bbcd9f34522cba9 289 PANTHER PTHR11904 4 286 3.8E-127 T 26-04-2016 IPR001369 PNP/MTAP phosphorylase RGE_RS12830 0cdaa28bffcf3db31bbcd9f34522cba9 289 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 3 266 40.924 T 26-04-2016 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 RGE_RS12830 0cdaa28bffcf3db31bbcd9f34522cba9 289 PANTHER PTHR11904:SF1 4 286 3.8E-127 T 26-04-2016 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 Pfam PF02803 Thiolase, C-terminal domain 276 398 8.2E-44 T 26-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 ProSitePatterns PS00099 Thiolases active site. 380 393 - T 26-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 10 397 1.1E-138 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 PIRSF PIRSF000429 2 399 2.4E-127 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 Gene3D G3DSA:3.40.47.10 7 130 4.7E-65 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 Gene3D G3DSA:3.40.47.10 191 282 4.7E-65 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 Gene3D G3DSA:3.40.47.10 151 190 3.9E-62 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 Gene3D G3DSA:3.40.47.10 283 398 3.9E-62 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 91 109 - T 26-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 SUPERFAMILY SSF53901 277 398 6.21E-43 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 PANTHER PTHR18919 5 399 3.6E-164 T 26-04-2016 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 ProSitePatterns PS00737 Thiolases signature 2. 345 361 - T 26-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 Pfam PF00108 Thiolase, N-terminal domain 9 268 1.5E-72 T 26-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RGE_RS04510 a13a752c4b08c1be66f35fa3480f1575 399 SUPERFAMILY SSF53901 7 275 4.26E-73 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS20095 14fa1f382d56240fa4abff38be4a4072 60 SUPERFAMILY SSF57829 2 55 5.13E-17 T 26-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 RGE_RS20095 14fa1f382d56240fa4abff38be4a4072 60 PANTHER PTHR35534 1 60 2.8E-26 T 26-04-2016 RGE_RS20095 14fa1f382d56240fa4abff38be4a4072 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 16.732 T 26-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RGE_RS20095 14fa1f382d56240fa4abff38be4a4072 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 7.4E-20 T 26-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RGE_RS20095 14fa1f382d56240fa4abff38be4a4072 60 Pfam PF01783 Ribosomal L32p protein family 2 55 2.0E-18 T 26-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RGE_RS21395 99352c6cb33f6590058f01507f4e05c5 317 PANTHER PTHR30238:SF0 4 309 5.2E-146 T 26-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 RGE_RS21395 99352c6cb33f6590058f01507f4e05c5 317 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 6 311 1.6E-121 T 26-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 RGE_RS21395 99352c6cb33f6590058f01507f4e05c5 317 Pfam PF03741 Integral membrane protein TerC family 80 282 7.6E-54 T 26-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 RGE_RS21395 99352c6cb33f6590058f01507f4e05c5 317 PANTHER PTHR30238 4 309 5.2E-146 T 26-04-2016 RGE_RS08420 e38b0af4646c70ffb3024bfa1704ea39 519 PANTHER PTHR11564:SF3 204 484 7.9E-55 T 26-04-2016 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 RGE_RS08420 e38b0af4646c70ffb3024bfa1704ea39 519 SMART SM00382 294 439 4.5E-5 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS08420 e38b0af4646c70ffb3024bfa1704ea39 519 Gene3D G3DSA:3.40.50.300 292 484 1.2E-36 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08420 e38b0af4646c70ffb3024bfa1704ea39 519 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 115 383 1.4E-59 T 26-04-2016 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 RGE_RS08420 e38b0af4646c70ffb3024bfa1704ea39 519 SMART SM00962 295 485 3.3E-36 T 26-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS08420 e38b0af4646c70ffb3024bfa1704ea39 519 Pfam PF00448 SRP54-type protein, GTPase domain 297 484 2.5E-29 T 26-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS08420 e38b0af4646c70ffb3024bfa1704ea39 519 SUPERFAMILY SSF52540 292 485 3.8E-29 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08420 e38b0af4646c70ffb3024bfa1704ea39 519 PANTHER PTHR11564 204 484 7.9E-55 T 26-04-2016 RGE_RS09695 20367acc64446195aa28f6003f775236 453 SUPERFAMILY SSF64518 144 453 1.31E-24 T 26-04-2016 RGE_RS09695 20367acc64446195aa28f6003f775236 453 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 3 452 4.5E-89 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS09695 20367acc64446195aa28f6003f775236 453 PANTHER PTHR30033 1 453 1.4E-58 T 26-04-2016 RGE_RS09695 20367acc64446195aa28f6003f775236 453 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 393 452 1.3E-9 T 26-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RGE_RS09695 20367acc64446195aa28f6003f775236 453 PRINTS PR01005 Flagellar hook-associated protein signature 212 230 9.6E-8 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS09695 20367acc64446195aa28f6003f775236 453 PRINTS PR01005 Flagellar hook-associated protein signature 154 178 9.6E-8 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS09695 20367acc64446195aa28f6003f775236 453 PRINTS PR01005 Flagellar hook-associated protein signature 47 69 9.6E-8 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS09695 20367acc64446195aa28f6003f775236 453 PRINTS PR01005 Flagellar hook-associated protein signature 121 141 9.6E-8 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS09695 20367acc64446195aa28f6003f775236 453 PRINTS PR01005 Flagellar hook-associated protein signature 10 33 9.6E-8 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS09695 20367acc64446195aa28f6003f775236 453 PANTHER PTHR30033:SF1 1 453 1.4E-58 T 26-04-2016 RGE_RS09695 20367acc64446195aa28f6003f775236 453 Pfam PF00460 Flagella basal body rod protein 4 34 6.5E-5 T 26-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RGE_RS13030 faaf2b72cd3d956702b48430a515a680 583 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 180 2.9E-17 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS13030 faaf2b72cd3d956702b48430a515a680 583 Pfam PF00672 HAMP domain 197 265 3.2E-15 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS13030 faaf2b72cd3d956702b48430a515a680 583 PANTHER PTHR32089 29 132 1.6E-149 T 26-04-2016 RGE_RS13030 faaf2b72cd3d956702b48430a515a680 583 PANTHER PTHR32089 191 520 1.6E-149 T 26-04-2016 RGE_RS13030 faaf2b72cd3d956702b48430a515a680 583 SMART SM00304 217 269 2.2E-12 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS13030 faaf2b72cd3d956702b48430a515a680 583 SUPERFAMILY SSF58104 237 518 7.59E-75 T 26-04-2016 RGE_RS13030 faaf2b72cd3d956702b48430a515a680 583 SMART SM00283 270 517 5.8E-92 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS13030 faaf2b72cd3d956702b48430a515a680 583 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 516 5.4E-62 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS13030 faaf2b72cd3d956702b48430a515a680 583 PANTHER PTHR32089:SF63 29 132 1.6E-149 T 26-04-2016 RGE_RS13030 faaf2b72cd3d956702b48430a515a680 583 PANTHER PTHR32089:SF63 191 520 1.6E-149 T 26-04-2016 RGE_RS13030 faaf2b72cd3d956702b48430a515a680 583 Gene3D G3DSA:1.10.287.950 286 489 3.6E-63 T 26-04-2016 RGE_RS06380 409e5a8a73ee10fc1bf54a293b77582d 110 PANTHER PTHR36116 1 107 4.1E-38 T 26-04-2016 RGE_RS06380 409e5a8a73ee10fc1bf54a293b77582d 110 SUPERFAMILY SSF103481 10 108 5.62E-6 T 26-04-2016 RGE_RS06380 409e5a8a73ee10fc1bf54a293b77582d 110 PANTHER PTHR36116:SF1 1 107 4.1E-38 T 26-04-2016 RGE_RS06380 409e5a8a73ee10fc1bf54a293b77582d 110 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 6 109 1.6E-34 T 26-04-2016 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 RGE_RS06380 409e5a8a73ee10fc1bf54a293b77582d 110 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 4 108 22.064 T 26-04-2016 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 RGE_RS13260 16d0a626849fe4e5ee7d64fee53e0c04 146 Pfam PF07977 FabA-like domain 11 137 9.0E-35 T 26-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RGE_RS13260 16d0a626849fe4e5ee7d64fee53e0c04 146 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 144 34.086 T 26-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RGE_RS13260 16d0a626849fe4e5ee7d64fee53e0c04 146 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2 141 1.2E-56 T 26-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RGE_RS13260 16d0a626849fe4e5ee7d64fee53e0c04 146 Gene3D G3DSA:3.10.129.10 2 144 2.6E-53 T 26-04-2016 IPR029069 HotDog domain RGE_RS13260 16d0a626849fe4e5ee7d64fee53e0c04 146 PANTHER PTHR30272 1 146 2.1E-70 T 26-04-2016 RGE_RS13260 16d0a626849fe4e5ee7d64fee53e0c04 146 SUPERFAMILY SSF54637 2 143 3.92E-46 T 26-04-2016 IPR029069 HotDog domain RGE_RS01860 26242ea7034a82934459e965ba1796dc 438 Pfam PF00465 Iron-containing alcohol dehydrogenase 36 394 5.0E-115 T 26-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 RGE_RS01860 26242ea7034a82934459e965ba1796dc 438 SUPERFAMILY SSF56796 33 403 1.96E-112 T 26-04-2016 RGE_RS01860 26242ea7034a82934459e965ba1796dc 438 PANTHER PTHR11496:SF74 33 410 5.7E-117 T 26-04-2016 RGE_RS01860 26242ea7034a82934459e965ba1796dc 438 Gene3D G3DSA:1.20.1090.10 208 404 9.5E-61 T 26-04-2016 RGE_RS01860 26242ea7034a82934459e965ba1796dc 438 Gene3D G3DSA:3.40.50.1970 35 207 7.7E-55 T 26-04-2016 RGE_RS01860 26242ea7034a82934459e965ba1796dc 438 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 283 303 - T 26-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RGE_RS01860 26242ea7034a82934459e965ba1796dc 438 PANTHER PTHR11496 33 410 5.7E-117 T 26-04-2016 RGE_RS00565 cc0ba1af566ac5f2b307c25689e42b69 275 Gene3D G3DSA:3.40.50.300 4 221 5.7E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00565 cc0ba1af566ac5f2b307c25689e42b69 275 SMART SM00382 44 222 1.1E-16 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS00565 cc0ba1af566ac5f2b307c25689e42b69 275 Pfam PF00005 ABC transporter 36 172 4.2E-26 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS00565 cc0ba1af566ac5f2b307c25689e42b69 275 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS00565 cc0ba1af566ac5f2b307c25689e42b69 275 PANTHER PTHR24220 14 243 1.7E-90 T 26-04-2016 RGE_RS00565 cc0ba1af566ac5f2b307c25689e42b69 275 PANTHER PTHR24220:SF561 14 243 1.7E-90 T 26-04-2016 RGE_RS00565 cc0ba1af566ac5f2b307c25689e42b69 275 SUPERFAMILY SSF52540 29 235 6.14E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 8 1158 0.0 T 26-04-2016 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|UniPathway: UPA00138 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Pfam PF02436 Conserved carboxylase domain 840 1043 1.2E-67 T 26-04-2016 IPR003379 Carboxylase, conserved domain RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 SUPERFAMILY SSF56059 88 325 4.07E-63 T 26-04-2016 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Pfam PF00289 Biotin carboxylase, N-terminal domain 6 115 1.0E-40 T 26-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Pfam PF00682 HMGL-like 545 816 4.8E-27 T 26-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 SUPERFAMILY SSF89000 845 1025 1.69E-50 T 26-04-2016 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Gene3D G3DSA:3.30.1490.20 135 206 8.3E-29 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Pfam PF00364 Biotin-requiring enzyme 1092 1157 1.6E-13 T 26-04-2016 IPR000089 Biotin/lipoyl attachment RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Gene3D G3DSA:1.10.10.60 967 1003 1.4E-13 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 SUPERFAMILY SSF51569 537 848 6.23E-85 T 26-04-2016 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Gene3D G3DSA:3.40.50.20 6 134 1.2E-47 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Pfam PF02785 Biotin carboxylase C-terminal domain 355 463 5.6E-33 T 26-04-2016 IPR005482 Biotin carboxylase, C-terminal RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 158 172 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Gene3D G3DSA:3.20.20.70 522 831 3.3E-133 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 SMART SM00878 355 462 3.3E-51 T 26-04-2016 IPR005482 Biotin carboxylase, C-terminal RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Gene3D G3DSA:3.10.600.10 1004 1075 3.9E-26 T 26-04-2016 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 PANTHER PTHR18866:SF103 1 1158 0.0 T 26-04-2016 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 SUPERFAMILY SSF51230 1081 1158 4.45E-20 T 26-04-2016 IPR011053 Single hybrid motif RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 121 325 1.0E-69 T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 SUPERFAMILY SSF52440 3 118 3.67E-43 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Gene3D G3DSA:2.40.50.100 1084 1159 1.9E-23 T 26-04-2016 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 SUPERFAMILY SSF51246 350 468 6.8E-37 T 26-04-2016 IPR011054 Rudiment single hybrid motif RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 292 299 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 PANTHER PTHR18866 1 1158 0.0 T 26-04-2016 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 1115 1132 - T 26-04-2016 IPR001882 Biotin-binding site RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 PIRSF PIRSF001594 1 1160 0.0 T 26-04-2016 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|UniPathway: UPA00138 RGE_RS10360 1258c82b3ebb471b46a39b565a44523c 1162 Gene3D G3DSA:3.30.470.20 208 469 2.9E-93 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 SUPERFAMILY SSF53187 177 402 1.48E-71 T 26-04-2016 RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 SUPERFAMILY SSF53187 514 588 1.48E-71 T 26-04-2016 RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 PANTHER PTHR32494 179 590 8.0E-135 T 26-04-2016 RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 201 575 3.4E-92 T 26-04-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 11 170 5.7E-53 T 26-04-2016 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 Gene3D G3DSA:3.40.630.10 529 589 1.9E-98 T 26-04-2016 RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 Gene3D G3DSA:3.40.630.10 176 404 1.9E-98 T 26-04-2016 RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 SUPERFAMILY SSF55031 392 506 6.28E-27 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 Pfam PF01546 Peptidase family M20/M25/M40 254 585 4.2E-26 T 26-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 Gene3D G3DSA:3.30.70.360 405 506 2.3E-34 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 Pfam PF09349 OHCU decarboxylase 8 169 1.0E-42 T 26-04-2016 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 Gene3D G3DSA:1.10.3330.10 11 173 4.9E-54 T 26-04-2016 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 RGE_RS19450 a97a947a0eb6c0f36a0e84905e6c2cba 590 SUPERFAMILY SSF158694 3 171 7.19E-50 T 26-04-2016 RGE_RS01380 9144db5cc44f3459140aa555ee418e54 373 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 207 367 1.6E-44 T 26-04-2016 IPR000160 GGDEF domain RGE_RS01380 9144db5cc44f3459140aa555ee418e54 373 Pfam PF00990 Diguanylate cyclase, GGDEF domain 210 365 9.4E-41 T 26-04-2016 IPR000160 GGDEF domain RGE_RS01380 9144db5cc44f3459140aa555ee418e54 373 SUPERFAMILY SSF55073 215 367 1.96E-44 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS01380 9144db5cc44f3459140aa555ee418e54 373 PANTHER PTHR10799 238 369 1.4E-25 T 26-04-2016 RGE_RS01380 9144db5cc44f3459140aa555ee418e54 373 Gene3D G3DSA:3.30.70.270 211 367 6.8E-53 T 26-04-2016 RGE_RS01380 9144db5cc44f3459140aa555ee418e54 373 SMART SM00267 199 369 1.1E-49 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23355 5257f422200604a8cc715c4b42608473 966 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 96 121 - T 26-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 Pfam PF13424 Tetratricopeptide repeat 733 798 6.8E-9 T 26-04-2016 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 Pfam PF13424 Tetratricopeptide repeat 651 719 1.7E-7 T 26-04-2016 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 SUPERFAMILY SSF48452 652 793 2.15E-11 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 Gene3D G3DSA:3.30.200.20 88 199 3.8E-18 T 26-04-2016 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 PANTHER PTHR24362:SF282 83 454 4.5E-73 T 26-04-2016 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 PANTHER PTHR24362:SF282 838 848 4.5E-73 T 26-04-2016 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 Gene3D G3DSA:1.10.510.10 200 357 1.6E-34 T 26-04-2016 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 SMART SM00220 90 360 2.2E-43 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 Pfam PF00069 Protein kinase domain 93 351 2.4E-35 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 PANTHER PTHR24362 83 454 4.5E-73 T 26-04-2016 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 PANTHER PTHR24362 838 848 4.5E-73 T 26-04-2016 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 SUPERFAMILY SSF56112 87 361 1.46E-55 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS23355 5257f422200604a8cc715c4b42608473 966 Pfam PF13374 Tetratricopeptide repeat 608 640 2.1E-4 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 209 221 - T 26-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RGE_RS23355 5257f422200604a8cc715c4b42608473 966 Gene3D G3DSA:1.25.40.10 581 878 1.9E-17 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS15980 2984a355377dddad9e1e9f995834bafb 225 Pfam PF08808 RES domain 66 200 1.7E-29 T 26-04-2016 IPR014914 RES domain RGE_RS15980 2984a355377dddad9e1e9f995834bafb 225 SMART SM00953 78 206 2.4E-30 T 26-04-2016 IPR014914 RES domain RGE_RS05125 b47382bde2dcac171c46767015f39da3 140 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 4 138 1.7E-37 T 26-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RGE_RS05125 b47382bde2dcac171c46767015f39da3 140 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 4 137 1.9E-41 T 26-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RGE_RS05125 b47382bde2dcac171c46767015f39da3 140 SUPERFAMILY SSF81330 13 134 1.31E-34 T 26-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RGE_RS05125 b47382bde2dcac171c46767015f39da3 140 PANTHER PTHR30266:SF2 1 140 8.1E-45 T 26-04-2016 RGE_RS05125 b47382bde2dcac171c46767015f39da3 140 PANTHER PTHR30266 1 140 8.1E-45 T 26-04-2016 RGE_RS05125 b47382bde2dcac171c46767015f39da3 140 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 90 98 6.7E-12 T 26-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RGE_RS05125 b47382bde2dcac171c46767015f39da3 140 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 6.7E-12 T 26-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RGE_RS05125 b47382bde2dcac171c46767015f39da3 140 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 99 108 6.7E-12 T 26-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RGE_RS05125 b47382bde2dcac171c46767015f39da3 140 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 26-04-2016 IPR019823 Large-conductance mechanosensitive channel, conserved site RGE_RS05125 b47382bde2dcac171c46767015f39da3 140 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 140 24.524 T 26-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 Gene3D G3DSA:3.20.20.70 5 488 2.0E-203 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 7 457 3.1E-192 T 26-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 PIRSF PIRSF000130 1 490 1.1E-205 T 26-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 SUPERFAMILY SSF51412 215 480 2.49E-126 T 26-04-2016 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 SUPERFAMILY SSF51412 4 89 2.49E-126 T 26-04-2016 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 7 476 1.9E-165 T 26-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 SMART SM01240 6 476 0.0 T 26-04-2016 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 Pfam PF00571 CBS domain 147 200 4.1E-8 T 26-04-2016 IPR000644 CBS domain RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 Pfam PF00571 CBS domain 94 138 6.9E-8 T 26-04-2016 IPR000644 CBS domain RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 293 305 - T 26-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 SUPERFAMILY SSF54631 94 201 1.13E-28 T 26-04-2016 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 PANTHER PTHR11911 297 489 1.7E-247 T 26-04-2016 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 PANTHER PTHR11911 5 279 1.7E-247 T 26-04-2016 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 SMART SM00116 156 204 7.4E-6 T 26-04-2016 IPR000644 CBS domain RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 SMART SM00116 95 142 8.8E-7 T 26-04-2016 IPR000644 CBS domain RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 7 489 85.041 T 26-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 PANTHER PTHR11911:SF6 297 489 1.7E-247 T 26-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RGE_RS15070 cb752697b8b0ee76adeb0edd31aaa7c2 490 PANTHER PTHR11911:SF6 5 279 1.7E-247 T 26-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RGE_RS14160 1533a6ea3d95bbc68f35ba47d7be6924 814 Pfam PF00343 Carbohydrate phosphorylase 102 810 0.0 T 26-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RGE_RS14160 1533a6ea3d95bbc68f35ba47d7be6924 814 PANTHER PTHR11468:SF3 11 810 0.0 T 26-04-2016 RGE_RS14160 1533a6ea3d95bbc68f35ba47d7be6924 814 PIRSF PIRSF000460 2 814 1.1E-224 T 26-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RGE_RS14160 1533a6ea3d95bbc68f35ba47d7be6924 814 PANTHER PTHR11468 11 810 0.0 T 26-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RGE_RS14160 1533a6ea3d95bbc68f35ba47d7be6924 814 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 654 666 - T 26-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RGE_RS14160 1533a6ea3d95bbc68f35ba47d7be6924 814 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 13 810 0.0 T 26-04-2016 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RGE_RS14160 1533a6ea3d95bbc68f35ba47d7be6924 814 Gene3D G3DSA:3.40.50.2000 11 479 4.2E-194 T 26-04-2016 RGE_RS14160 1533a6ea3d95bbc68f35ba47d7be6924 814 Gene3D G3DSA:3.40.50.2000 480 795 9.2E-132 T 26-04-2016 RGE_RS14160 1533a6ea3d95bbc68f35ba47d7be6924 814 SUPERFAMILY SSF53756 12 810 0.0 T 26-04-2016 RGE_RS06685 5e685abb21ee30bea058429ab9cb0183 233 Gene3D G3DSA:2.60.120.10 3 231 2.6E-70 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS06685 5e685abb21ee30bea058429ab9cb0183 233 PANTHER PTHR13903:SF7 1 231 1.9E-107 T 26-04-2016 RGE_RS06685 5e685abb21ee30bea058429ab9cb0183 233 Pfam PF02678 Pirin 9 119 9.3E-35 T 26-04-2016 IPR003829 Pirin, N-terminal domain RGE_RS06685 5e685abb21ee30bea058429ab9cb0183 233 SUPERFAMILY SSF51182 1 231 4.93E-74 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS06685 5e685abb21ee30bea058429ab9cb0183 233 PANTHER PTHR13903 1 231 1.9E-107 T 26-04-2016 IPR012093 Pirin RGE_RS06685 5e685abb21ee30bea058429ab9cb0183 233 PIRSF PIRSF006232 1 230 1.8E-49 T 26-04-2016 IPR012093 Pirin RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 Pfam PF12848 ABC transporter 230 306 4.0E-11 T 26-04-2016 IPR032781 ABC-transporter extension domain RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 Gene3D G3DSA:3.40.50.300 12 287 5.0E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 1.6E-285 T 26-04-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 Pfam PF00005 ABC transporter 340 473 1.3E-23 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 Pfam PF00005 ABC transporter 22 191 1.7E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 PANTHER PTHR19211 1 554 0.0 T 26-04-2016 RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 PANTHER PTHR19211:SF7 1 554 0.0 T 26-04-2016 RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 Gene3D G3DSA:3.40.50.300 321 535 4.3E-46 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 SUPERFAMILY SSF52540 304 517 5.33E-47 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 SUPERFAMILY SSF52540 12 236 2.94E-47 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 SMART SM00382 348 526 1.4E-7 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11810 3a5f80f1876142e9e1862bfe214f5430 554 SMART SM00382 31 242 4.6E-10 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 SUPERFAMILY SSF82693 38 130 4.97E-23 T 26-04-2016 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 SUPERFAMILY SSF82714 719 801 2.88E-18 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 SUPERFAMILY SSF82693 135 182 8.89E-21 T 26-04-2016 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 SUPERFAMILY SSF82693 274 329 8.89E-21 T 26-04-2016 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 Gene3D G3DSA:3.30.70.1430 566 665 2.0E-26 T 26-04-2016 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 Pfam PF00873 AcrB/AcrD/AcrF family 1 1020 0.0 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 SUPERFAMILY SSF82693 564 664 2.88E-24 T 26-04-2016 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 Gene3D G3DSA:3.30.70.1430 38 139 2.2E-29 T 26-04-2016 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 Gene3D G3DSA:3.30.2090.10 718 805 1.1E-19 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 Gene3D G3DSA:3.30.2090.10 181 275 1.5E-24 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 SUPERFAMILY SSF82714 183 272 3.4E-20 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 PANTHER PTHR32063:SF13 1 1020 0.0 T 26-04-2016 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 5.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 5.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 5.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 PRINTS PR00702 Acriflavin resistance protein family signature 618 632 5.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 5.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 5.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 5.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 5.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 5.4E-100 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 PANTHER PTHR32063 1 1020 0.0 T 26-04-2016 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1022 0.0 T 26-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 SUPERFAMILY SSF82866 296 496 2.35E-47 T 26-04-2016 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 SUPERFAMILY SSF82866 804 1022 1.1E-44 T 26-04-2016 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 Gene3D G3DSA:1.10.3850.10 279 498 2.4E-56 T 26-04-2016 RGE_RS14380 8863a0108612931f6457b34a9b34928c 1043 Gene3D G3DSA:1.10.3850.10 809 1021 6.2E-55 T 26-04-2016 RGE_RS11865 9d37bead1f4402818f59eb217390f146 231 PANTHER PTHR24220:SF568 3 231 1.7E-81 T 26-04-2016 RGE_RS11865 9d37bead1f4402818f59eb217390f146 231 PANTHER PTHR24220 3 231 1.7E-81 T 26-04-2016 RGE_RS11865 9d37bead1f4402818f59eb217390f146 231 SUPERFAMILY SSF52540 2 224 7.42E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11865 9d37bead1f4402818f59eb217390f146 231 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS11865 9d37bead1f4402818f59eb217390f146 231 SMART SM00382 26 191 7.3E-9 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11865 9d37bead1f4402818f59eb217390f146 231 Gene3D G3DSA:3.40.50.300 1 224 2.5E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11865 9d37bead1f4402818f59eb217390f146 231 Pfam PF00005 ABC transporter 17 159 2.0E-26 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS16175 096d74574915ae3aad79ab897def5116 285 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 57 70 - T 26-04-2016 IPR000489 Pterin-binding domain GO:0042558 RGE_RS16175 096d74574915ae3aad79ab897def5116 285 PANTHER PTHR20941:SF1 16 283 2.0E-109 T 26-04-2016 RGE_RS16175 096d74574915ae3aad79ab897def5116 285 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 22 277 6.9E-92 T 26-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 RGE_RS16175 096d74574915ae3aad79ab897def5116 285 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 23 38 - T 26-04-2016 IPR000489 Pterin-binding domain GO:0042558 RGE_RS16175 096d74574915ae3aad79ab897def5116 285 SUPERFAMILY SSF51717 10 279 4.45E-96 T 26-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RGE_RS16175 096d74574915ae3aad79ab897def5116 285 Gene3D G3DSA:3.20.20.20 18 280 6.3E-103 T 26-04-2016 IPR000489 Pterin-binding domain GO:0042558 RGE_RS16175 096d74574915ae3aad79ab897def5116 285 PANTHER PTHR20941 16 283 2.0E-109 T 26-04-2016 RGE_RS16175 096d74574915ae3aad79ab897def5116 285 Pfam PF00809 Pterin binding enzyme 24 263 1.6E-78 T 26-04-2016 IPR000489 Pterin-binding domain GO:0042558 RGE_RS22785 34e29ad3738660242c46fb60e502db37 483 SUPERFAMILY SSF89095 302 405 1.2E-28 T 26-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 RGE_RS22785 34e29ad3738660242c46fb60e502db37 483 Pfam PF02637 GatB domain 334 481 4.0E-50 T 26-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RGE_RS22785 34e29ad3738660242c46fb60e502db37 483 Pfam PF02934 GatB/GatE catalytic domain 12 294 2.1E-107 T 26-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 RGE_RS22785 34e29ad3738660242c46fb60e502db37 483 PANTHER PTHR11659:SF0 8 481 2.1E-239 T 26-04-2016 RGE_RS22785 34e29ad3738660242c46fb60e502db37 483 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 150 164 - T 26-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 RGE_RS22785 34e29ad3738660242c46fb60e502db37 483 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 9 482 36.737 T 26-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RGE_RS22785 34e29ad3738660242c46fb60e502db37 483 SMART SM00845 333 481 1.3E-74 T 26-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RGE_RS22785 34e29ad3738660242c46fb60e502db37 483 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 10 481 1.9E-157 T 26-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RGE_RS22785 34e29ad3738660242c46fb60e502db37 483 Gene3D G3DSA:1.10.10.410 426 481 1.6E-5 T 26-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RGE_RS22785 34e29ad3738660242c46fb60e502db37 483 SUPERFAMILY SSF55931 11 301 4.97E-115 T 26-04-2016 RGE_RS22785 34e29ad3738660242c46fb60e502db37 483 PANTHER PTHR11659 8 481 2.1E-239 T 26-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 PANTHER PTHR11615:SF149 1 182 7.6E-247 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 PANTHER PTHR11615:SF149 397 481 7.6E-247 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 PANTHER PTHR11615:SF149 286 380 7.6E-247 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 PANTHER PTHR11615:SF149 673 809 7.6E-247 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 PANTHER PTHR11615:SF149 575 649 7.6E-247 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 PANTHER PTHR11615:SF149 210 247 7.6E-247 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 Gene3D G3DSA:2.40.40.20 601 647 6.1E-47 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 Gene3D G3DSA:2.40.40.20 679 809 6.1E-47 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 Pfam PF00384 Molybdopterin oxidoreductase 2 378 3.4E-20 T 26-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 PANTHER PTHR11615 1 182 7.6E-247 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 PANTHER PTHR11615 397 481 7.6E-247 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 PANTHER PTHR11615 286 380 7.6E-247 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 PANTHER PTHR11615 673 809 7.6E-247 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 PANTHER PTHR11615 575 649 7.6E-247 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 PANTHER PTHR11615 210 247 7.6E-247 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 Gene3D G3DSA:3.40.228.10 152 261 7.9E-68 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 Gene3D G3DSA:3.40.228.10 1 108 7.9E-68 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 SUPERFAMILY SSF53706 1 641 8.9E-226 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 Pfam PF01568 Molydopterin dinucleotide binding domain 687 802 1.3E-13 T 26-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 Gene3D G3DSA:3.40.50.740 320 469 4.8E-58 T 26-04-2016 RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 SUPERFAMILY SSF50692 620 650 7.46E-42 T 26-04-2016 IPR009010 Aspartate decarboxylase-like domain RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 SUPERFAMILY SSF50692 680 809 7.46E-42 T 26-04-2016 IPR009010 Aspartate decarboxylase-like domain RGE_RS05620 af9bef79032af43ae1d624ee89cf07e5 809 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 808 0.0 T 26-04-2016 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 RGE_RS05680 faf4e169a35491c93b1f953ff16ecf63 390 PIRSF PIRSF015658 2 388 1.8E-155 T 26-04-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 RGE_RS05680 faf4e169a35491c93b1f953ff16ecf63 390 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 24 382 1.0E-133 T 26-04-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 RGE_RS05680 faf4e169a35491c93b1f953ff16ecf63 390 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 25 386 4.2E-145 T 26-04-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 RGE_RS05680 faf4e169a35491c93b1f953ff16ecf63 390 PANTHER PTHR35806 1 390 7.5E-166 T 26-04-2016 RGE_RS05200 aa2fd2014d31805cbe6f7d638ea80586 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 70 272 6.9E-19 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05200 aa2fd2014d31805cbe6f7d638ea80586 273 Gene3D G3DSA:1.10.3720.10 41 270 2.4E-55 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05200 aa2fd2014d31805cbe6f7d638ea80586 273 SUPERFAMILY SSF161098 35 262 5.89E-52 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05200 aa2fd2014d31805cbe6f7d638ea80586 273 PANTHER PTHR32243 1 272 3.2E-96 T 26-04-2016 RGE_RS05200 aa2fd2014d31805cbe6f7d638ea80586 273 PANTHER PTHR32243:SF13 1 272 3.2E-96 T 26-04-2016 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 62 69 - T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 PANTHER PTHR11405 17 320 3.3E-120 T 26-04-2016 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 147 164 8.8E-28 T 26-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 273 278 8.8E-28 T 26-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 90 99 8.8E-28 T 26-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 232 241 8.8E-28 T 26-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 297 311 8.8E-28 T 26-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 PRINTS PR00101 Aspartate carbamoyltransferase signature 52 74 8.8E-28 T 26-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 148 159 1.3E-17 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 269 278 1.3E-17 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 281 304 1.3E-17 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 62 81 1.3E-17 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 Gene3D G3DSA:3.40.50.1370 160 295 1.2E-47 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 17 315 3.5E-86 T 26-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 PANTHER PTHR11405:SF16 17 320 3.3E-120 T 26-04-2016 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 17 160 7.7E-35 T 26-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 168 314 4.3E-24 T 26-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 SUPERFAMILY SSF53671 17 318 1.19E-91 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 15 318 39.788 T 26-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS20470 58c0209e84373b6e3ede53c8d9721d44 320 Gene3D G3DSA:3.40.50.1370 17 159 5.4E-48 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS21260 768eeb1f128877feb1160b1aff184304 291 PANTHER PTHR30193:SF10 1 290 7.8E-77 T 26-04-2016 RGE_RS21260 768eeb1f128877feb1160b1aff184304 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 281 3.2E-13 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS21260 768eeb1f128877feb1160b1aff184304 291 Gene3D G3DSA:1.10.3720.10 3 281 3.3E-41 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS21260 768eeb1f128877feb1160b1aff184304 291 SUPERFAMILY SSF161098 4 284 1.96E-45 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS21260 768eeb1f128877feb1160b1aff184304 291 PANTHER PTHR30193 1 290 7.8E-77 T 26-04-2016 RGE_RS22435 f4ecd344fd8f55cb1e446bb8a7b27076 451 PANTHER PTHR24362 19 293 9.5E-73 T 26-04-2016 RGE_RS22435 f4ecd344fd8f55cb1e446bb8a7b27076 451 SMART SM00100 316 445 8.6E-10 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS22435 f4ecd344fd8f55cb1e446bb8a7b27076 451 Gene3D G3DSA:1.10.510.10 94 289 4.8E-46 T 26-04-2016 RGE_RS22435 f4ecd344fd8f55cb1e446bb8a7b27076 451 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 29 52 - T 26-04-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 RGE_RS22435 f4ecd344fd8f55cb1e446bb8a7b27076 451 Gene3D G3DSA:2.60.120.10 307 402 4.1E-18 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS22435 f4ecd344fd8f55cb1e446bb8a7b27076 451 Pfam PF00069 Protein kinase domain 23 243 1.3E-44 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS22435 f4ecd344fd8f55cb1e446bb8a7b27076 451 SMART SM00220 23 286 3.7E-44 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS22435 f4ecd344fd8f55cb1e446bb8a7b27076 451 Gene3D G3DSA:3.30.200.20 19 93 9.1E-20 T 26-04-2016 RGE_RS22435 f4ecd344fd8f55cb1e446bb8a7b27076 451 SUPERFAMILY SSF56112 9 284 7.82E-65 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS22435 f4ecd344fd8f55cb1e446bb8a7b27076 451 PANTHER PTHR24362:SF160 19 293 9.5E-73 T 26-04-2016 RGE_RS22435 f4ecd344fd8f55cb1e446bb8a7b27076 451 SUPERFAMILY SSF51206 305 395 1.01E-18 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS22435 f4ecd344fd8f55cb1e446bb8a7b27076 451 Pfam PF00027 Cyclic nucleotide-binding domain 335 414 2.0E-9 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS13385 16f0c18585143459593177329fa60711 447 SUPERFAMILY SSF52540 4 163 5.85E-44 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13385 16f0c18585143459593177329fa60711 447 PANTHER PTHR11649:SF5 2 439 6.4E-136 T 26-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RGE_RS13385 16f0c18585143459593177329fa60711 447 SMART SM00382 179 335 2.4 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS13385 16f0c18585143459593177329fa60711 447 SMART SM00382 1 142 0.39 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS13385 16f0c18585143459593177329fa60711 447 Gene3D G3DSA:3.30.300.20 362 438 1.4E-22 T 26-04-2016 IPR015946 K homology domain-like, alpha/beta RGE_RS13385 16f0c18585143459593177329fa60711 447 PIRSF PIRSF006485 1 444 2.0E-163 T 26-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RGE_RS13385 16f0c18585143459593177329fa60711 447 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 6.4E-8 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS13385 16f0c18585143459593177329fa60711 447 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 73 91 6.4E-8 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS13385 16f0c18585143459593177329fa60711 447 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 180 346 4.2E-28 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS13385 16f0c18585143459593177329fa60711 447 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 157 1.8E-20 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS13385 16f0c18585143459593177329fa60711 447 Pfam PF01926 50S ribosome-binding GTPase 5 120 9.5E-27 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS13385 16f0c18585143459593177329fa60711 447 Pfam PF01926 50S ribosome-binding GTPase 183 300 7.4E-23 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS13385 16f0c18585143459593177329fa60711 447 SUPERFAMILY SSF52540 139 442 1.36E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13385 16f0c18585143459593177329fa60711 447 Hamap MF_00195 GTPase Der [der]. 2 439 36.92 T 26-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RGE_RS13385 16f0c18585143459593177329fa60711 447 PANTHER PTHR11649 2 439 6.4E-136 T 26-04-2016 RGE_RS13385 16f0c18585143459593177329fa60711 447 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 356 436 4.8E-23 T 26-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like RGE_RS13385 16f0c18585143459593177329fa60711 447 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 436 2.6E-166 T 26-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RGE_RS13385 16f0c18585143459593177329fa60711 447 Gene3D G3DSA:3.40.50.300 3 164 6.5E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13385 16f0c18585143459593177329fa60711 447 Gene3D G3DSA:3.40.50.300 180 361 1.7E-47 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 SMART SM00086 133 175 8.2E-12 T 26-04-2016 IPR001610 PAC motif RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 SMART SM00086 255 297 1.6E-6 T 26-04-2016 IPR001610 PAC motif RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 PANTHER PTHR10799:SF774 187 578 9.8E-83 T 26-04-2016 RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 SMART SM00091 61 127 1.3E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 SMART SM00091 183 253 3.3E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 Gene3D G3DSA:3.30.70.270 309 476 1.9E-63 T 26-04-2016 RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 SUPERFAMILY SSF55785 188 295 6.6E-28 T 26-04-2016 IPR000014 PAS domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 SUPERFAMILY SSF141868 483 732 6.02E-84 T 26-04-2016 IPR001633 EAL domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 SUPERFAMILY SSF55073 313 469 1.02E-53 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 SMART SM00052 478 724 3.3E-106 T 26-04-2016 IPR001633 EAL domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 PANTHER PTHR10799 187 578 9.8E-83 T 26-04-2016 RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 188 303 9.2E-25 T 26-04-2016 IPR000014 PAS domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 65 182 6.2E-19 T 26-04-2016 IPR000014 PAS domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 Gene3D G3DSA:3.30.450.20 74 175 1.1E-35 T 26-04-2016 RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 Pfam PF00990 Diguanylate cyclase, GGDEF domain 308 462 1.4E-50 T 26-04-2016 IPR000160 GGDEF domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 SUPERFAMILY SSF55785 68 175 2.09E-32 T 26-04-2016 IPR000014 PAS domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 Gene3D G3DSA:3.30.450.20 192 296 6.3E-27 T 26-04-2016 RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 Gene3D G3DSA:3.20.20.450 481 729 5.0E-90 T 26-04-2016 IPR001633 EAL domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 SMART SM00267 297 468 1.2E-72 T 26-04-2016 IPR000160 GGDEF domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 306 465 1.3E-45 T 26-04-2016 IPR000160 GGDEF domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 Pfam PF00563 EAL domain 484 718 3.2E-70 T 26-04-2016 IPR001633 EAL domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 Pfam PF13426 PAS domain 72 174 2.7E-23 T 26-04-2016 IPR000014 PAS domain RGE_RS08655 4c7720ece6e6a3c88f8e78b0e40e1d6e 737 Pfam PF13426 PAS domain 194 296 5.4E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 Pfam PF00072 Response regulator receiver domain 4 115 1.4E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 PANTHER PTHR26402:SF137 2 200 3.3E-92 T 26-04-2016 RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 PANTHER PTHR26402 2 200 3.3E-92 T 26-04-2016 RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 SUPERFAMILY SSF52172 2 130 3.13E-29 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 SMART SM00448 2 115 2.8E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 Gene3D G3DSA:3.40.50.2300 2 142 5.5E-34 T 26-04-2016 RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 SUPERFAMILY SSF46894 125 200 2.62E-21 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 SMART SM00421 137 194 1.7E-23 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 Pfam PF00196 Bacterial regulatory proteins, luxR family 138 194 1.9E-19 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 Gene3D G3DSA:1.10.10.10 143 200 2.6E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 140 154 5.8E-12 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 170 5.8E-12 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS09435 a519f83ff1c5facccce3f619a311f1f4 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 182 5.8E-12 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 PANTHER PTHR13734:SF45 295 686 6.6E-98 T 26-04-2016 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 PIRSF PIRSF006288 4 873 3.0E-292 T 26-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 Pfam PF08335 GlnD PII-uridylyltransferase 177 315 1.6E-30 T 26-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 Pfam PF01909 Nucleotidyltransferase domain 70 100 1.5E-5 T 26-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 SUPERFAMILY SSF81593 182 311 2.98E-8 T 26-04-2016 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 Pfam PF01966 HD domain 454 562 3.5E-11 T 26-04-2016 IPR006674 HD domain RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 Gene3D G3DSA:3.30.460.10 72 168 5.7E-8 T 26-04-2016 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 SUPERFAMILY SSF55021 687 751 5.73E-10 T 26-04-2016 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 SUPERFAMILY SSF109604 419 543 1.52E-14 T 26-04-2016 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 Gene3D G3DSA:1.10.3210.10 427 607 7.9E-19 T 26-04-2016 IPR006674 HD domain RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 SMART SM00471 448 595 2.8E-8 T 26-04-2016 IPR003607 HD/PDEase domain RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 873 312.687 T 26-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 PANTHER PTHR13734 295 686 6.6E-98 T 26-04-2016 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 SUPERFAMILY SSF81301 42 169 2.19E-20 T 26-04-2016 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 SUPERFAMILY SSF55021 800 852 2.08E-10 T 26-04-2016 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 41 868 8.7E-232 T 26-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 Gene3D G3DSA:3.30.70.260 689 737 7.3E-5 T 26-04-2016 RGE_RS11605 3e2fe30425a01769108b5470ec3fa407 873 Gene3D G3DSA:3.30.70.260 800 862 1.6E-12 T 26-04-2016 RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 SUPERFAMILY SSF48179 192 311 8.5E-22 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 194 293 9.5E-15 T 26-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 SUPERFAMILY SSF52096 481 794 2.16E-36 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 SUPERFAMILY SSF51735 5 192 4.47E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 PANTHER PTHR23309 4 464 4.3E-115 T 26-04-2016 RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 8 191 1.8E-43 T 26-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 SUPERFAMILY SSF48179 343 460 2.47E-19 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 PANTHER PTHR23309:SF2 4 464 4.3E-115 T 26-04-2016 RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 Gene3D G3DSA:1.10.1040.10 195 294 2.8E-18 T 26-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 Gene3D G3DSA:1.10.1040.10 346 411 8.9E-9 T 26-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 Pfam PF00378 Enoyl-CoA hydratase/isomerase 505 632 6.7E-16 T 26-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 Gene3D G3DSA:3.90.226.10 490 639 3.4E-25 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS04505 03c66a8c727d57cea12519b71fc2827d 798 Gene3D G3DSA:3.40.50.720 5 194 4.0E-42 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 PANTHER PTHR24093 629 676 0.0 T 26-04-2016 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 PANTHER PTHR24093 9 591 0.0 T 26-04-2016 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 Gene3D G3DSA:3.40.1110.10 320 446 4.6E-49 T 26-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 Gene3D G3DSA:3.40.50.1000 447 567 2.0E-35 T 26-04-2016 IPR023214 HAD-like domain RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 Pfam PF00702 haloacid dehalogenase-like hydrolase 305 534 6.4E-32 T 26-04-2016 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 467 477 8.9E-24 T 26-04-2016 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 309 323 8.9E-24 T 26-04-2016 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 152 166 8.9E-24 T 26-04-2016 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 543 555 8.9E-24 T 26-04-2016 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 520 539 8.9E-24 T 26-04-2016 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 Gene3D G3DSA:2.70.150.10 58 206 1.1E-21 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 PANTHER PTHR24093:SF49 629 676 0.0 T 26-04-2016 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 PANTHER PTHR24093:SF49 9 591 0.0 T 26-04-2016 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 SUPERFAMILY SSF56784 297 321 1.18E-38 T 26-04-2016 IPR023214 HAD-like domain RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 SUPERFAMILY SSF56784 439 563 1.18E-38 T 26-04-2016 IPR023214 HAD-like domain RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 SUPERFAMILY SSF56784 356 408 1.18E-38 T 26-04-2016 IPR023214 HAD-like domain RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 6 678 0.0 T 26-04-2016 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 Pfam PF00122 E1-E2 ATPase 65 300 1.5E-39 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 311 317 - T 26-04-2016 IPR018303 P-type ATPase, phosphorylation site RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 8 684 40.284 T 26-04-2016 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 65 338 6.8E-30 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 376 608 7.5E-44 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 SUPERFAMILY SSF81665 206 303 2.22E-10 T 26-04-2016 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 SUPERFAMILY SSF81665 33 96 2.22E-10 T 26-04-2016 RGE_RS10095 6ae70f076e4a8278d15e88988268f72c 686 SUPERFAMILY SSF81653 115 205 6.02E-20 T 26-04-2016 RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 Gene3D G3DSA:3.40.50.720 10 240 8.0E-64 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PANTHER PTHR24322:SF57 159 190 1.2E-44 T 26-04-2016 RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PANTHER PTHR24322:SF57 14 143 1.2E-44 T 26-04-2016 RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 3.2E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 3.2E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 3.2E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.2E-29 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 2.2E-29 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 2.2E-29 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.2E-29 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 2.2E-29 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PIRSF PIRSF000126 1 267 7.5E-73 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 Pfam PF00106 short chain dehydrogenase 11 201 3.8E-51 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 SUPERFAMILY SSF51735 10 261 1.29E-61 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 194 0.0021 T 26-04-2016 RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PANTHER PTHR24322 159 190 1.2E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17625 5562448804b4e08548e8e39a3f4367c7 269 PANTHER PTHR24322 14 143 1.2E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 Gene3D G3DSA:3.30.565.10 319 486 3.2E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 SMART SM00388 247 317 1.2E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 Pfam PF00512 His Kinase A (phospho-acceptor) domain 247 315 6.9E-12 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 Pfam PF00672 HAMP domain 180 242 6.3E-8 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 SMART SM00387 366 485 1.3E-33 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 PANTHER PTHR24423:SF474 188 488 4.8E-63 T 26-04-2016 RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 419 1.2E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 433 1.2E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 455 1.2E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 SUPERFAMILY SSF47384 230 316 1.59E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 370 483 2.7E-18 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 PANTHER PTHR24423 188 488 4.8E-63 T 26-04-2016 RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 SUPERFAMILY SSF55874 306 483 2.1E-34 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 Gene3D G3DSA:1.10.287.130 240 313 1.3E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22745 8f0a98c33b22071970ac4cbd59a301bb 491 Pfam PF08521 Two-component sensor kinase N-terminal 22 170 2.4E-36 T 26-04-2016 IPR013727 Two-component sensor kinase, N-terminal RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 Gene3D G3DSA:3.30.1490.70 362 407 3.3E-16 T 26-04-2016 RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 Gene3D G3DSA:3.30.1490.70 203 236 3.3E-16 T 26-04-2016 RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 Pfam PF01068 ATP dependent DNA ligase domain 227 407 2.2E-28 T 26-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 Gene3D G3DSA:2.40.50.140 412 563 1.9E-34 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 SUPERFAMILY SSF56091 206 407 3.84E-55 T 26-04-2016 RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 232 240 - T 26-04-2016 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 Reactome: REACT_216 RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 PANTHER PTHR10459 227 439 2.9E-64 T 26-04-2016 RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 PANTHER PTHR10459 469 562 2.9E-64 T 26-04-2016 RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 Pfam PF04679 ATP dependent DNA ligase C terminal region 473 548 2.0E-7 T 26-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family 3 444 7.0E-153 T 26-04-2016 IPR026333 ATP-dependent DNA ligase, PP_1105 family RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 Pfam PF04675 DNA ligase N terminus 3 161 5.3E-18 T 26-04-2016 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 Gene3D G3DSA:3.30.470.30 237 353 6.7E-32 T 26-04-2016 RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 SUPERFAMILY SSF50249 412 443 3.6E-25 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS05435 97a5632a2e1519e684a3c743e4fcc7ce 567 SUPERFAMILY SSF50249 473 563 3.6E-25 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 SMART SM00929 83 123 3.0E-19 T 26-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 SUPERFAMILY SSF53706 214 651 2.42E-90 T 26-04-2016 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 PANTHER PTHR11615 383 434 5.4E-156 T 26-04-2016 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 PANTHER PTHR11615 3 342 5.4E-156 T 26-04-2016 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 PANTHER PTHR11615 523 646 5.4E-156 T 26-04-2016 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 146 156 - T 26-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 SUPERFAMILY SSF54292 1 74 2.22E-19 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 76 7.3E-20 T 26-04-2016 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 117 4.8E-16 T 26-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 Gene3D G3DSA:3.40.50.740 273 344 5.6E-49 T 26-04-2016 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 Gene3D G3DSA:3.40.50.740 476 650 5.6E-49 T 26-04-2016 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 Gene3D G3DSA:3.10.20.30 2 59 5.0E-6 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 626 8.8E-196 T 26-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 98 110 - T 26-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 26-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 SUPERFAMILY SSF54862 75 211 1.3E-34 T 26-04-2016 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 Pfam PF00384 Molybdopterin oxidoreductase 273 626 2.0E-34 T 26-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 PANTHER PTHR11615:SF38 383 434 5.4E-156 T 26-04-2016 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 PANTHER PTHR11615:SF38 3 342 5.4E-156 T 26-04-2016 RGE_RS07685 c452f84d2c503de6532f155e9e724d48 774 PANTHER PTHR11615:SF38 523 646 5.4E-156 T 26-04-2016 RGE_RS09525 fff8aa67605737576522707431f54587 699 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 143 166 - T 26-04-2016 IPR025505 FHIPEP conserved site RGE_RS09525 fff8aa67605737576522707431f54587 699 PANTHER PTHR30161:SF1 1 699 2.4E-303 T 26-04-2016 RGE_RS09525 fff8aa67605737576522707431f54587 699 Pfam PF00771 FHIPEP family 27 689 5.7E-234 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS09525 fff8aa67605737576522707431f54587 699 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 71 90 1.0E-55 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS09525 fff8aa67605737576522707431f54587 699 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 138 154 1.0E-55 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS09525 fff8aa67605737576522707431f54587 699 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 187 204 1.0E-55 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS09525 fff8aa67605737576522707431f54587 699 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 238 252 1.0E-55 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS09525 fff8aa67605737576522707431f54587 699 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 34 47 1.0E-55 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS09525 fff8aa67605737576522707431f54587 699 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 157 175 1.0E-55 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS09525 fff8aa67605737576522707431f54587 699 PIRSF PIRSF005419 1 699 7.8E-214 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS09525 fff8aa67605737576522707431f54587 699 PANTHER PTHR30161 1 699 2.4E-303 T 26-04-2016 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 PANTHER PTHR13847:SF148 1 63 2.3E-202 T 26-04-2016 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 PANTHER PTHR13847:SF148 107 417 2.3E-202 T 26-04-2016 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 47.206 T 26-04-2016 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 UniPathway: UPA00043 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 Gene3D G3DSA:3.30.9.10 135 190 2.7E-17 T 26-04-2016 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 Gene3D G3DSA:3.30.9.10 270 359 2.7E-17 T 26-04-2016 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 SUPERFAMILY SSF51905 1 54 6.6E-57 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 SUPERFAMILY SSF51905 360 416 6.6E-57 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 SUPERFAMILY SSF51905 107 270 6.6E-57 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 Pfam PF01266 FAD dependent oxidoreductase 2 398 1.5E-69 T 26-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 SUPERFAMILY SSF54373 270 360 1.05E-18 T 26-04-2016 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 Gene3D G3DSA:3.50.50.60 1 58 2.1E-52 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 Gene3D G3DSA:3.50.50.60 191 269 2.1E-52 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 Gene3D G3DSA:3.50.50.60 360 416 2.1E-52 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 Gene3D G3DSA:3.50.50.60 108 130 2.1E-52 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 PANTHER PTHR13847 1 63 2.3E-202 T 26-04-2016 RGE_RS16950 c8eac03f79a4e71d4f238dbb7683b518 417 PANTHER PTHR13847 107 417 2.3E-202 T 26-04-2016 RGE_RS23015 9a9f262b700bdc3078f87c44ca46c03d 227 SUPERFAMILY SSF46689 168 217 2.96E-8 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23015 9a9f262b700bdc3078f87c44ca46c03d 227 SUPERFAMILY SSF51182 15 71 1.16E-7 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS23015 9a9f262b700bdc3078f87c44ca46c03d 227 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 169 210 - T 26-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RGE_RS23015 9a9f262b700bdc3078f87c44ca46c03d 227 PANTHER PTHR11019 132 222 1.2E-19 T 26-04-2016 RGE_RS23015 9a9f262b700bdc3078f87c44ca46c03d 227 Gene3D G3DSA:2.60.120.10 15 71 1.2E-10 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS23015 9a9f262b700bdc3078f87c44ca46c03d 227 SMART SM00342 132 214 1.4E-21 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS23015 9a9f262b700bdc3078f87c44ca46c03d 227 Gene3D G3DSA:1.10.10.60 170 217 6.2E-12 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23015 9a9f262b700bdc3078f87c44ca46c03d 227 Gene3D G3DSA:1.10.10.60 115 169 1.3E-9 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23015 9a9f262b700bdc3078f87c44ca46c03d 227 Pfam PF12833 Helix-turn-helix domain 138 215 5.0E-20 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS16415 481796929c0287dd945899ccdd3eb684 514 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 67 458 6.4E-49 T 26-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RGE_RS16415 481796929c0287dd945899ccdd3eb684 514 TIGRFAM TIGR02015 BchY: chlorophyllide reductase subunit Y 57 475 1.4E-210 T 26-04-2016 IPR010245 Chlorophyllide reductase subunit Y GO:0015979|GO:0016021|GO:0016731|GO:0030494 KEGG: 00860+1.3.99.35|MetaCyc: PWY-5526|UniPathway: UPA00671 RGE_RS16415 481796929c0287dd945899ccdd3eb684 514 SUPERFAMILY SSF53807 60 471 2.71E-64 T 26-04-2016 RGE_RS16415 481796929c0287dd945899ccdd3eb684 514 PANTHER PTHR39429:SF2 63 442 3.9E-55 T 26-04-2016 RGE_RS16415 481796929c0287dd945899ccdd3eb684 514 PIRSF PIRSF000163 57 514 5.2E-145 T 26-04-2016 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16415 481796929c0287dd945899ccdd3eb684 514 PANTHER PTHR39429 63 442 3.9E-55 T 26-04-2016 RGE_RS16415 481796929c0287dd945899ccdd3eb684 514 Gene3D G3DSA:3.40.50.1980 67 197 8.8E-4 T 26-04-2016 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 Pfam PF01751 Toprim domain 427 541 9.2E-12 T 26-04-2016 IPR006171 Toprim domain RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 Pfam PF00204 DNA gyrase B 226 399 2.8E-34 T 26-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 ProSitePatterns PS00177 DNA topoisomerase II signature. 430 438 - T 26-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 Gene3D G3DSA:3.40.50.670 412 636 8.6E-75 T 26-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 SUPERFAMILY SSF54211 261 401 3.41E-35 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 Gene3D G3DSA:3.30.565.10 18 222 2.3E-66 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 SMART SM00433 36 651 2.6E-181 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 Gene3D G3DSA:3.30.230.10 226 401 1.2E-35 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 SUPERFAMILY SSF56719 402 647 9.15E-72 T 26-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR01098 Topoisomerase IV subunit B signature 182 199 2.1E-37 T 26-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR01098 Topoisomerase IV subunit B signature 29 42 2.1E-37 T 26-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR01098 Topoisomerase IV subunit B signature 200 221 2.1E-37 T 26-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR01098 Topoisomerase IV subunit B signature 141 155 2.1E-37 T 26-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR01098 Topoisomerase IV subunit B signature 308 324 2.1E-37 T 26-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR01098 Topoisomerase IV subunit B signature 376 401 2.1E-37 T 26-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR01098 Topoisomerase IV subunit B signature 352 375 2.1E-37 T 26-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR01098 Topoisomerase IV subunit B signature 325 340 2.1E-37 T 26-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR01098 Topoisomerase IV subunit B signature 462 483 2.1E-37 T 26-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 SUPERFAMILY SSF55874 8 223 1.96E-58 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 36 179 6.2E-17 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PANTHER PTHR10169 7 656 6.0E-298 T 26-04-2016 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 583 647 1.8E-21 T 26-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 SMART SM00387 30 181 8.7E-18 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 5 655 43.157 T 26-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR00418 DNA topoisomerase II family signature 428 442 1.2E-59 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR00418 DNA topoisomerase II family signature 515 532 1.2E-59 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR00418 DNA topoisomerase II family signature 115 129 1.2E-59 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR00418 DNA topoisomerase II family signature 587 603 1.2E-59 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR00418 DNA topoisomerase II family signature 535 547 1.2E-59 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR00418 DNA topoisomerase II family signature 69 82 1.2E-59 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR00418 DNA topoisomerase II family signature 497 513 1.2E-59 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR00418 DNA topoisomerase II family signature 280 293 1.2E-59 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PRINTS PR00418 DNA topoisomerase II family signature 34 49 1.2E-59 T 26-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16945 b3730a35d1171c4c178c0b657ec3a54b 657 PANTHER PTHR10169:SF45 7 656 6.0E-298 T 26-04-2016 RGE_RS07805 72514aea544117f86aaf46fb49167785 383 PANTHER PTHR30469 5 371 9.6E-51 T 26-04-2016 RGE_RS07805 72514aea544117f86aaf46fb49167785 383 Gene3D G3DSA:2.40.50.100 66 98 1.6E-11 T 26-04-2016 RGE_RS07805 72514aea544117f86aaf46fb49167785 383 Gene3D G3DSA:2.40.50.100 173 205 1.6E-11 T 26-04-2016 RGE_RS07805 72514aea544117f86aaf46fb49167785 383 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 360 3.9E-61 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS07805 72514aea544117f86aaf46fb49167785 383 SUPERFAMILY SSF111369 54 281 4.05E-24 T 26-04-2016 RGE_RS07805 72514aea544117f86aaf46fb49167785 383 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 278 4.3E-24 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 SUPERFAMILY SSF81271 410 473 7.19E-18 T 26-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 SMART SM00954 254 364 5.0E-56 T 26-04-2016 IPR007685 RelA/SpoT GO:0015969 RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 SUPERFAMILY SSF109604 31 209 1.19E-42 T 26-04-2016 RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 Pfam PF02824 TGS domain 415 473 4.2E-19 T 26-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 Gene3D G3DSA:3.30.70.260 667 742 3.8E-17 T 26-04-2016 RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 Pfam PF13328 HD domain 37 195 1.6E-45 T 26-04-2016 IPR003607 HD/PDEase domain RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 SUPERFAMILY SSF55021 664 744 1.83E-15 T 26-04-2016 RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 47 737 5.1E-162 T 26-04-2016 IPR004811 RelA/SpoT family GO:0015969 RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 Pfam PF04607 Region found in RelA / SpoT proteins 254 363 2.2E-31 T 26-04-2016 IPR007685 RelA/SpoT GO:0015969 RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 Gene3D G3DSA:3.10.20.30 414 476 1.7E-18 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 PANTHER PTHR21262 93 745 7.9E-232 T 26-04-2016 RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 PANTHER PTHR21262:SF5 93 745 7.9E-232 T 26-04-2016 RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 SUPERFAMILY SSF81301 211 365 7.68E-56 T 26-04-2016 RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 Pfam PF13291 ACT domain 665 744 1.5E-15 T 26-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RGE_RS13050 355633a9596bb035f2f7ad6d07f3fceb 745 Gene3D G3DSA:3.30.460.10 196 344 4.0E-47 T 26-04-2016 RGE_RS10725 39f03562b57943192e5e736375f92e52 786 PANTHER PTHR31956 3 266 1.9E-136 T 26-04-2016 RGE_RS10725 39f03562b57943192e5e736375f92e52 786 PANTHER PTHR31956 427 568 1.9E-136 T 26-04-2016 RGE_RS10725 39f03562b57943192e5e736375f92e52 786 PANTHER PTHR31956:SF6 304 397 1.9E-136 T 26-04-2016 RGE_RS10725 39f03562b57943192e5e736375f92e52 786 PANTHER PTHR31956 304 397 1.9E-136 T 26-04-2016 RGE_RS10725 39f03562b57943192e5e736375f92e52 786 Pfam PF04185 Phosphoesterase family 47 476 3.9E-109 T 26-04-2016 IPR007312 Phosphoesterase GO:0016788 RGE_RS10725 39f03562b57943192e5e736375f92e52 786 Pfam PF05506 Domain of unknown function (DUF756) 671 767 4.7E-20 T 26-04-2016 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 RGE_RS10725 39f03562b57943192e5e736375f92e52 786 Pfam PF05506 Domain of unknown function (DUF756) 547 659 3.1E-23 T 26-04-2016 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 RGE_RS10725 39f03562b57943192e5e736375f92e52 786 PANTHER PTHR31956:SF6 3 266 1.9E-136 T 26-04-2016 RGE_RS10725 39f03562b57943192e5e736375f92e52 786 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 4 781 8.7E-270 T 26-04-2016 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 RGE_RS10725 39f03562b57943192e5e736375f92e52 786 PANTHER PTHR31956:SF6 427 568 1.9E-136 T 26-04-2016 RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 Pfam PF00069 Protein kinase domain 13 254 1.5E-45 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 Gene3D G3DSA:1.10.510.10 77 267 2.5E-45 T 26-04-2016 RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 PANTHER PTHR24362 8 309 1.7E-72 T 26-04-2016 RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 PANTHER PTHR24362 519 603 1.7E-72 T 26-04-2016 RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 Gene3D G3DSA:3.30.450.40 629 790 2.2E-9 T 26-04-2016 IPR029016 GAF domain-like RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 SUPERFAMILY SSF109604 286 564 3.11E-40 T 26-04-2016 RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 SMART SM00220 12 267 6.1E-57 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 SUPERFAMILY SSF55781 643 790 4.25E-8 T 26-04-2016 IPR029016 GAF domain-like RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 SUPERFAMILY SSF56112 9 266 7.85E-67 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 Gene3D G3DSA:1.10.3150.10 285 564 3.3E-49 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 Gene3D G3DSA:3.30.200.20 9 76 3.9E-18 T 26-04-2016 RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 Pfam PF08668 HDOD domain 298 488 1.2E-29 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 - T 26-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 PANTHER PTHR24362:SF160 519 603 1.7E-72 T 26-04-2016 RGE_RS16100 8481c7e3a1ddc5d9c6d1f6b9e6cd7b6a 792 PANTHER PTHR24362:SF160 8 309 1.7E-72 T 26-04-2016 RGE_RS00730 a9bdedd720facdec47c85da8a9d261ae 441 Pfam PF07642 Putative beta-barrel porin-2, OmpL-like. bbp2 40 441 2.6E-49 T 26-04-2016 IPR011486 Putative beta-barrel porin-2, OmpL-like. bbp2 RGE_RS00730 a9bdedd720facdec47c85da8a9d261ae 441 SUPERFAMILY SSF56935 105 207 1.17E-12 T 26-04-2016 RGE_RS00730 a9bdedd720facdec47c85da8a9d261ae 441 SUPERFAMILY SSF56935 35 59 1.17E-12 T 26-04-2016 RGE_RS00730 a9bdedd720facdec47c85da8a9d261ae 441 SUPERFAMILY SSF56935 240 441 1.17E-12 T 26-04-2016 RGE_RS01635 97c511f51ed706993f57a871a16a6d63 109 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 4.0E-44 T 26-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RGE_RS01635 97c511f51ed706993f57a871a16a6d63 109 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 109 24.942 T 26-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RGE_RS01635 97c511f51ed706993f57a871a16a6d63 109 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 26-04-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01635 97c511f51ed706993f57a871a16a6d63 109 Pfam PF00237 Ribosomal protein L22p/L17e 9 107 1.4E-30 T 26-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RGE_RS01635 97c511f51ed706993f57a871a16a6d63 109 PANTHER PTHR13501 1 107 4.6E-45 T 26-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RGE_RS01635 97c511f51ed706993f57a871a16a6d63 109 Gene3D G3DSA:3.90.470.10 1 108 4.0E-40 T 26-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RGE_RS01635 97c511f51ed706993f57a871a16a6d63 109 SUPERFAMILY SSF54843 1 108 4.32E-39 T 26-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RGE_RS04970 f38636df5865e350cf08fdd4d78dfb32 127 Pfam PF00072 Response regulator receiver domain 7 117 1.3E-15 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04970 f38636df5865e350cf08fdd4d78dfb32 127 Gene3D G3DSA:3.40.50.2300 4 117 2.7E-18 T 26-04-2016 RGE_RS04970 f38636df5865e350cf08fdd4d78dfb32 127 SMART SM00448 4 119 1.4E-12 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04970 f38636df5865e350cf08fdd4d78dfb32 127 SUPERFAMILY SSF52172 4 121 2.42E-20 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS04970 f38636df5865e350cf08fdd4d78dfb32 127 PANTHER PTHR26402 4 117 4.1E-15 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 SUPERFAMILY SSF82714 182 272 3.4E-23 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 PANTHER PTHR32063 1 1034 0.0 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 SUPERFAMILY SSF82693 38 132 4.36E-26 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 Gene3D G3DSA:1.20.1640.10 850 1037 5.4E-41 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1039 0.0 T 26-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 SUPERFAMILY SSF82866 296 498 2.35E-49 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 PANTHER PTHR32063:SF13 1 1034 0.0 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 SUPERFAMILY SSF82866 837 1028 1.44E-39 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 3.9E-109 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 3.9E-109 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 3.9E-109 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 3.9E-109 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 3.9E-109 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 3.9E-109 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 3.9E-109 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 3.9E-109 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 3.9E-109 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 Gene3D G3DSA:1.10.3850.10 281 499 2.5E-59 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 Gene3D G3DSA:3.30.2090.10 722 810 1.0E-23 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 Gene3D G3DSA:3.30.2090.10 181 275 7.2E-29 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 Gene3D G3DSA:3.30.70.1430 38 139 2.5E-34 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 SUPERFAMILY SSF82714 723 808 2.75E-19 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 SUPERFAMILY SSF82693 136 182 8.37E-27 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 SUPERFAMILY SSF82693 274 330 8.37E-27 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 SUPERFAMILY SSF82693 673 722 4.19E-24 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 SUPERFAMILY SSF82693 809 858 4.19E-24 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 SUPERFAMILY SSF82693 566 670 1.75E-28 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 Gene3D G3DSA:3.30.70.1440 818 849 1.9E-25 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 Gene3D G3DSA:3.30.70.1440 673 721 1.9E-25 T 26-04-2016 RGE_RS08090 533f3ee3e2ad8e5f30bf05d30b78cdb9 1053 Gene3D G3DSA:3.30.70.1430 568 671 1.7E-33 T 26-04-2016 RGE_RS01285 3575d60f1a3633e30a66b3bec8c39763 371 SUPERFAMILY SSF52540 4 242 3.16E-85 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01285 3575d60f1a3633e30a66b3bec8c39763 371 Gene3D G3DSA:2.40.50.140 286 344 3.8E-8 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS01285 3575d60f1a3633e30a66b3bec8c39763 371 Pfam PF08402 TOBE domain 281 352 2.6E-8 T 26-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RGE_RS01285 3575d60f1a3633e30a66b3bec8c39763 371 Gene3D G3DSA:3.40.50.300 4 233 1.5E-74 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01285 3575d60f1a3633e30a66b3bec8c39763 371 Gene3D G3DSA:2.40.50.100 346 360 2.5E-19 T 26-04-2016 RGE_RS01285 3575d60f1a3633e30a66b3bec8c39763 371 Gene3D G3DSA:2.40.50.100 239 285 2.5E-19 T 26-04-2016 RGE_RS01285 3575d60f1a3633e30a66b3bec8c39763 371 SMART SM00382 28 211 2.8E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS01285 3575d60f1a3633e30a66b3bec8c39763 371 Pfam PF00005 ABC transporter 19 161 1.2E-31 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS01285 3575d60f1a3633e30a66b3bec8c39763 371 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS01285 3575d60f1a3633e30a66b3bec8c39763 371 SUPERFAMILY SSF50331 236 361 1.16E-28 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS01285 3575d60f1a3633e30a66b3bec8c39763 371 PANTHER PTHR24220 5 242 7.2E-163 T 26-04-2016 RGE_RS01285 3575d60f1a3633e30a66b3bec8c39763 371 PANTHER PTHR24220:SF572 5 242 7.2E-163 T 26-04-2016 RGE_RS22080 23d120087f9a4814cc8c848c93f6716e 366 PANTHER PTHR34388 1 351 2.3E-57 T 26-04-2016 RGE_RS22080 23d120087f9a4814cc8c848c93f6716e 366 Pfam PF06144 DNA polymerase III, delta subunit 20 194 2.9E-22 T 26-04-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 RGE_RS22080 23d120087f9a4814cc8c848c93f6716e 366 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 17 338 4.1E-79 T 26-04-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 RGE_RS22080 23d120087f9a4814cc8c848c93f6716e 366 Gene3D G3DSA:1.10.8.60 142 226 4.3E-34 T 26-04-2016 RGE_RS22080 23d120087f9a4814cc8c848c93f6716e 366 Gene3D G3DSA:1.20.272.20 227 341 1.6E-30 T 26-04-2016 RGE_RS22080 23d120087f9a4814cc8c848c93f6716e 366 SUPERFAMILY SSF48019 216 339 4.68E-25 T 26-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RGE_RS22080 23d120087f9a4814cc8c848c93f6716e 366 Gene3D G3DSA:3.40.50.300 1 138 4.9E-55 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22080 23d120087f9a4814cc8c848c93f6716e 366 SUPERFAMILY SSF52540 1 214 6.9E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20725 4734eaba33886646d9120e950d0faaf5 191 Gene3D G3DSA:3.90.79.10 7 152 1.9E-29 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS20725 4734eaba33886646d9120e950d0faaf5 191 SUPERFAMILY SSF55811 4 160 1.76E-31 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS20725 4734eaba33886646d9120e950d0faaf5 191 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 26-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RGE_RS20725 4734eaba33886646d9120e950d0faaf5 191 Pfam PF00293 NUDIX domain 7 136 3.4E-23 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS20725 4734eaba33886646d9120e950d0faaf5 191 PRINTS PR00502 NUDIX hydrolase family signature 47 62 3.1E-7 T 26-04-2016 IPR020476 NUDIX hydrolase RGE_RS20725 4734eaba33886646d9120e950d0faaf5 191 PRINTS PR00502 NUDIX hydrolase family signature 33 47 3.1E-7 T 26-04-2016 IPR020476 NUDIX hydrolase RGE_RS20725 4734eaba33886646d9120e950d0faaf5 191 PANTHER PTHR23114 1 191 9.5E-40 T 26-04-2016 RGE_RS20725 4734eaba33886646d9120e950d0faaf5 191 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.584 T 26-04-2016 IPR022927 RNA pyrophosphohydrolase RppH RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 PRINTS PR00344 Bacterial sensor protein C-terminal signature 556 566 1.4E-6 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 PRINTS PR00344 Bacterial sensor protein C-terminal signature 567 585 1.4E-6 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 PRINTS PR00344 Bacterial sensor protein C-terminal signature 538 552 1.4E-6 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 Pfam PF00512 His Kinase A (phospho-acceptor) domain 389 448 4.1E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 SUPERFAMILY SSF55874 467 597 1.31E-23 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 SMART SM00388 388 453 2.9E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 Gene3D G3DSA:1.10.287.130 382 448 1.4E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 Gene3D G3DSA:3.30.450.20 254 374 3.2E-7 T 26-04-2016 RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 606 3.5E-11 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 SMART SM00387 499 610 5.6E-20 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 PANTHER PTHR24423 46 60 2.3E-50 T 26-04-2016 RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 PANTHER PTHR24423 256 593 2.3E-50 T 26-04-2016 RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 Gene3D G3DSA:3.30.565.10 474 598 7.4E-23 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20640 376a9debc2d6964306d2b2d2070cf752 622 SUPERFAMILY SSF47384 380 448 1.04E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04620 a8964c5edfc5e1dd563966a30b879947 305 PANTHER PTHR10314 3 298 1.0E-127 T 26-04-2016 RGE_RS04620 a8964c5edfc5e1dd563966a30b879947 305 PANTHER PTHR10314:SF110 3 298 1.0E-127 T 26-04-2016 RGE_RS04620 a8964c5edfc5e1dd563966a30b879947 305 SUPERFAMILY SSF53686 2 299 3.27E-91 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS04620 a8964c5edfc5e1dd563966a30b879947 305 Gene3D G3DSA:3.40.50.1100 41 142 3.7E-42 T 26-04-2016 RGE_RS04620 a8964c5edfc5e1dd563966a30b879947 305 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 286 1.2E-66 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS04620 a8964c5edfc5e1dd563966a30b879947 305 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 300 1.5E-117 T 26-04-2016 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 RGE_RS04620 a8964c5edfc5e1dd563966a30b879947 305 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 301 6.1E-113 T 26-04-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 RGE_RS04620 a8964c5edfc5e1dd563966a30b879947 305 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 26-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RGE_RS04620 a8964c5edfc5e1dd563966a30b879947 305 Gene3D G3DSA:3.40.50.1100 1 40 4.4E-62 T 26-04-2016 RGE_RS04620 a8964c5edfc5e1dd563966a30b879947 305 Gene3D G3DSA:3.40.50.1100 148 299 4.4E-62 T 26-04-2016 RGE_RS16310 942933b33d798caf1536586684cc1c46 1236 Pfam PF02514 CobN/Magnesium Chelatase 178 1212 0.0 T 26-04-2016 IPR003672 CobN/magnesium chelatase GO:0009058 RGE_RS16310 942933b33d798caf1536586684cc1c46 1236 TIGRFAM TIGR02025 BchH: magnesium chelatase, H subunit 14 787 0.0 T 26-04-2016 IPR011771 Magnesium-chelatase, subunit H GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16310 942933b33d798caf1536586684cc1c46 1236 PANTHER PTHR23304:SF109 416 1230 0.0 T 26-04-2016 RGE_RS16310 942933b33d798caf1536586684cc1c46 1236 PANTHER PTHR23304:SF109 14 398 0.0 T 26-04-2016 RGE_RS16310 942933b33d798caf1536586684cc1c46 1236 Pfam PF11965 Domain of unknown function (DUF3479) 15 174 3.8E-50 T 26-04-2016 IPR022571 Magnesium chelatase, subunit H, N-terminal GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16310 942933b33d798caf1536586684cc1c46 1236 PANTHER PTHR23304 416 1230 0.0 T 26-04-2016 RGE_RS16310 942933b33d798caf1536586684cc1c46 1236 PANTHER PTHR23304 14 398 0.0 T 26-04-2016 RGE_RS17775 21142426ab3c820a4ccf88d9aac987a3 239 Gene3D G3DSA:2.60.120.10 10 136 1.8E-6 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS17775 21142426ab3c820a4ccf88d9aac987a3 239 SUPERFAMILY SSF46785 147 222 2.12E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17775 21142426ab3c820a4ccf88d9aac987a3 239 Pfam PF13545 Crp-like helix-turn-helix domain 150 216 9.8E-14 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS17775 21142426ab3c820a4ccf88d9aac987a3 239 SMART SM00419 162 210 3.6E-4 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS17775 21142426ab3c820a4ccf88d9aac987a3 239 PANTHER PTHR24567:SF22 7 233 3.7E-70 T 26-04-2016 RGE_RS17775 21142426ab3c820a4ccf88d9aac987a3 239 SUPERFAMILY SSF51206 8 137 1.15E-10 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS17775 21142426ab3c820a4ccf88d9aac987a3 239 Gene3D G3DSA:1.10.10.10 152 218 4.3E-10 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17775 21142426ab3c820a4ccf88d9aac987a3 239 SMART SM00100 12 130 9.6E-5 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS17775 21142426ab3c820a4ccf88d9aac987a3 239 PANTHER PTHR24567 7 233 3.7E-70 T 26-04-2016 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 795 43.018 T 26-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 SUPERFAMILY SSF50249 36 200 1.64E-46 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 Gene3D G3DSA:3.30.56.10 160 189 3.9E-21 T 26-04-2016 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 Gene3D G3DSA:3.30.56.10 1 38 3.9E-21 T 26-04-2016 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 SUPERFAMILY SSF46955 407 478 1.1E-17 T 26-04-2016 IPR009061 Putative DNA-binding domain RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 Gene3D G3DSA:3.50.40.10 204 395 1.1E-75 T 26-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 PANTHER PTHR10947:SF0 2 801 1.6E-246 T 26-04-2016 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 PANTHER PTHR10947 2 801 1.6E-246 T 26-04-2016 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 Pfam PF03147 Ferredoxin-fold anticodon binding domain 706 801 1.1E-18 T 26-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 Pfam PF01588 Putative tRNA binding domain 45 150 5.2E-25 T 26-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 Pfam PF03484 tRNA synthetase B5 domain 409 474 5.2E-18 T 26-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 SMART SM00874 406 474 2.2E-25 T 26-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 SUPERFAMILY SSF56037 201 396 4.18E-67 T 26-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 801 2.1E-213 T 26-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 SMART SM00873 217 390 8.4E-80 T 26-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 Gene3D G3DSA:3.30.70.380 711 801 2.1E-18 T 26-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 SMART SM00896 706 801 1.8E-29 T 26-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 Gene3D G3DSA:2.40.50.140 41 159 1.6E-41 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 Gene3D G3DSA:3.30.930.10 493 696 8.6E-57 T 26-04-2016 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 Pfam PF03483 B3/4 domain 218 390 3.7E-60 T 26-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 Gene3D G3DSA:3.30.56.20 405 478 2.1E-24 T 26-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 SUPERFAMILY SSF54991 702 801 4.05E-16 T 26-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RGE_RS11970 59e902fb0be8ce354db2d235878ce126 802 SUPERFAMILY SSF55681 470 695 1.04E-44 T 26-04-2016 RGE_RS19480 8286f2bfcdecb40ac27cdfdbc9cc7197 294 SUPERFAMILY SSF53850 94 293 6.52E-25 T 26-04-2016 RGE_RS19480 8286f2bfcdecb40ac27cdfdbc9cc7197 294 PANTHER PTHR30126 5 272 2.1E-55 T 26-04-2016 RGE_RS19480 8286f2bfcdecb40ac27cdfdbc9cc7197 294 Pfam PF03466 LysR substrate binding domain 91 290 5.2E-27 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS19480 8286f2bfcdecb40ac27cdfdbc9cc7197 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.1E-17 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS19480 8286f2bfcdecb40ac27cdfdbc9cc7197 294 PANTHER PTHR30126:SF19 5 272 2.1E-55 T 26-04-2016 RGE_RS19480 8286f2bfcdecb40ac27cdfdbc9cc7197 294 SUPERFAMILY SSF46785 6 90 2.72E-17 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19480 8286f2bfcdecb40ac27cdfdbc9cc7197 294 Gene3D G3DSA:3.40.190.10 178 253 2.1E-11 T 26-04-2016 RGE_RS19480 8286f2bfcdecb40ac27cdfdbc9cc7197 294 Gene3D G3DSA:1.10.10.10 6 90 7.1E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19480 8286f2bfcdecb40ac27cdfdbc9cc7197 294 Gene3D G3DSA:3.40.190.10 97 177 4.0E-6 T 26-04-2016 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 PANTHER PTHR11451:SF31 1 631 0.0 T 26-04-2016 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 Gene3D G3DSA:3.30.54.20 130 186 3.2E-22 T 26-04-2016 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 630 1.5E-216 T 26-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 SUPERFAMILY SSF81271 2 61 3.71E-16 T 26-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 Gene3D G3DSA:3.10.20.30 1 64 4.7E-24 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 318 528 6.3E-41 T 26-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 Gene3D G3DSA:3.40.50.800 530 632 1.9E-33 T 26-04-2016 IPR004154 Anticodon-binding RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 SUPERFAMILY SSF52954 529 631 1.03E-30 T 26-04-2016 IPR004154 Anticodon-binding RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 SUPERFAMILY SSF55681 242 525 9.57E-100 T 26-04-2016 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 633 34.351 T 26-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 Gene3D G3DSA:3.30.980.10 187 223 7.7E-41 T 26-04-2016 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 Gene3D G3DSA:3.30.980.10 66 129 7.7E-41 T 26-04-2016 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 SMART SM00863 169 218 4.9E-24 T 26-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 Pfam PF03129 Anticodon binding domain 540 628 3.9E-19 T 26-04-2016 IPR004154 Anticodon-binding RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 533 545 1.3E-51 T 26-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 1.3E-51 T 26-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 463 491 1.3E-51 T 26-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 1.3E-51 T 26-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 506 519 1.3E-51 T 26-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 SUPERFAMILY SSF55186 63 240 1.05E-66 T 26-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 Gene3D G3DSA:3.30.930.10 241 529 5.5E-119 T 26-04-2016 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 PANTHER PTHR11451 1 631 0.0 T 26-04-2016 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 169 218 3.5E-14 T 26-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RGE_RS11945 3eda0090e50ca762cad78b8799827bc9 635 Pfam PF02824 TGS domain 2 61 1.2E-10 T 26-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 6 203 37.595 T 26-04-2016 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 SUPERFAMILY SSF53182 7 214 1.14E-64 T 26-04-2016 RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 Gene3D G3DSA:3.40.630.20 8 213 7.4E-61 T 26-04-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 PIRSF PIRSF015592 5 215 7.7E-74 T 26-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 Pfam PF01470 Pyroglutamyl peptidase 8 203 3.0E-69 T 26-04-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 134 148 - T 26-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 8 214 2.3E-77 T 26-04-2016 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 66 78 7.4E-40 T 26-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 8 31 7.4E-40 T 26-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 165 177 7.4E-40 T 26-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 84 104 7.4E-40 T 26-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 136 152 7.4E-40 T 26-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 PANTHER PTHR23402 9 216 2.6E-51 T 26-04-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like RGE_RS19105 0126af703aa0303b4c4dd5b8f7533de1 217 PANTHER PTHR23402:SF1 9 216 2.6E-51 T 26-04-2016 RGE_RS15890 75c063e29985bc4c7369be85ff2d1737 280 SUPERFAMILY SSF50249 174 278 1.37E-26 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS15890 75c063e29985bc4c7369be85ff2d1737 280 PANTHER PTHR10459:SF61 36 279 1.1E-51 T 26-04-2016 RGE_RS15890 75c063e29985bc4c7369be85ff2d1737 280 SUPERFAMILY SSF56091 33 199 1.51E-34 T 26-04-2016 RGE_RS15890 75c063e29985bc4c7369be85ff2d1737 280 Gene3D G3DSA:3.30.1490.70 25 53 1.4E-7 T 26-04-2016 RGE_RS15890 75c063e29985bc4c7369be85ff2d1737 280 Gene3D G3DSA:3.30.1490.70 157 185 1.4E-7 T 26-04-2016 RGE_RS15890 75c063e29985bc4c7369be85ff2d1737 280 PANTHER PTHR10459 36 279 1.1E-51 T 26-04-2016 RGE_RS15890 75c063e29985bc4c7369be85ff2d1737 280 Gene3D G3DSA:2.40.50.140 186 279 5.4E-31 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS15890 75c063e29985bc4c7369be85ff2d1737 280 Pfam PF14743 DNA ligase OB-like domain 214 278 5.1E-26 T 26-04-2016 IPR029319 DNA ligase, OB-like domain RGE_RS15890 75c063e29985bc4c7369be85ff2d1737 280 Pfam PF01068 ATP dependent DNA ligase domain 116 199 1.6E-7 T 26-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 RGE_RS20675 52180054f89975ea009a47b0f097ef0e 444 PANTHER PTHR11918 1 441 1.4E-196 T 26-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RGE_RS20675 52180054f89975ea009a47b0f097ef0e 444 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 438 2.7E-148 T 26-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RGE_RS20675 52180054f89975ea009a47b0f097ef0e 444 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 3 439 2.3E-175 T 26-04-2016 RGE_RS20675 52180054f89975ea009a47b0f097ef0e 444 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 148 168 - T 26-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RGE_RS20675 52180054f89975ea009a47b0f097ef0e 444 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 2 442 73.549 T 26-04-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 RGE_RS20675 52180054f89975ea009a47b0f097ef0e 444 Gene3D G3DSA:3.80.30.20 144 372 1.7E-76 T 26-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RGE_RS20675 52180054f89975ea009a47b0f097ef0e 444 Pfam PF00919 Uncharacterized protein family UPF0004 3 101 6.5E-31 T 26-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RGE_RS20675 52180054f89975ea009a47b0f097ef0e 444 SMART SM00729 144 369 4.3E-56 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS20675 52180054f89975ea009a47b0f097ef0e 444 Pfam PF01938 TRAM domain 377 441 4.1E-15 T 26-04-2016 IPR002792 TRAM domain RGE_RS20675 52180054f89975ea009a47b0f097ef0e 444 Pfam PF04055 Radical SAM superfamily 148 323 3.7E-28 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS20675 52180054f89975ea009a47b0f097ef0e 444 PANTHER PTHR11918:SF43 1 441 1.4E-196 T 26-04-2016 RGE_RS20675 52180054f89975ea009a47b0f097ef0e 444 SUPERFAMILY SSF102114 120 369 1.05E-57 T 26-04-2016 RGE_RS08515 f57081eaba3da89060ba8d4440af2fe3 260 Pfam PF00460 Flagella basal body rod protein 5 35 8.8E-11 T 26-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RGE_RS08515 f57081eaba3da89060ba8d4440af2fe3 260 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 6 241 7.1E-54 T 26-04-2016 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 RGE_RS08515 f57081eaba3da89060ba8d4440af2fe3 260 SUPERFAMILY SSF117143 92 222 6.02E-37 T 26-04-2016 RGE_RS08515 f57081eaba3da89060ba8d4440af2fe3 260 PANTHER PTHR30435:SF19 1 260 1.5E-125 T 26-04-2016 RGE_RS08515 f57081eaba3da89060ba8d4440af2fe3 260 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 259 1.0E-113 T 26-04-2016 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 RGE_RS08515 f57081eaba3da89060ba8d4440af2fe3 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 148 243 2.8E-33 T 26-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RGE_RS08515 f57081eaba3da89060ba8d4440af2fe3 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 1.4E-47 T 26-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RGE_RS08515 f57081eaba3da89060ba8d4440af2fe3 260 PANTHER PTHR30435 1 260 1.5E-125 T 26-04-2016 RGE_RS08515 f57081eaba3da89060ba8d4440af2fe3 260 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 259 8.7E-27 T 26-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RGE_RS03845 4de961cf8739f0aeef1a6507bcc76047 195 SUPERFAMILY SSF48256 2 111 4.58E-5 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS03845 4de961cf8739f0aeef1a6507bcc76047 195 Pfam PF11736 Protein of unknown function (DUF3299) 48 190 5.5E-40 T 26-04-2016 IPR021727 Protein of unknown function DUF3299 RGE_RS20460 dd93b547fa8259a11a59c8225a123f5e 245 SMART SM00563 67 180 3.0E-29 T 26-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RGE_RS20460 dd93b547fa8259a11a59c8225a123f5e 245 PANTHER PTHR10434:SF8 3 181 4.8E-42 T 26-04-2016 RGE_RS20460 dd93b547fa8259a11a59c8225a123f5e 245 SUPERFAMILY SSF69593 27 242 9.68E-24 T 26-04-2016 RGE_RS20460 dd93b547fa8259a11a59c8225a123f5e 245 Gene3D G3DSA:3.40.1130.10 68 177 2.3E-8 T 26-04-2016 RGE_RS20460 dd93b547fa8259a11a59c8225a123f5e 245 PANTHER PTHR10434 3 181 4.8E-42 T 26-04-2016 RGE_RS20460 dd93b547fa8259a11a59c8225a123f5e 245 Pfam PF01553 Acyltransferase 65 176 1.8E-18 T 26-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 224 346 2.5E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 353 476 4.8E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 614 721 2.9E-20 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 SUPERFAMILY SSF47384 485 566 5.49E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 SUPERFAMILY SSF55874 572 721 9.82E-33 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 Gene3D G3DSA:3.30.450.20 405 497 6.5E-11 T 26-04-2016 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 PRINTS PR00344 Bacterial sensor protein C-terminal signature 684 702 5.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 PRINTS PR00344 Bacterial sensor protein C-terminal signature 708 721 5.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 PRINTS PR00344 Bacterial sensor protein C-terminal signature 651 665 5.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 PRINTS PR00344 Bacterial sensor protein C-terminal signature 669 679 5.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 Gene3D G3DSA:3.30.450.20 224 334 1.2E-11 T 26-04-2016 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 PANTHER PTHR24423:SF383 225 720 1.3E-83 T 26-04-2016 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 Gene3D G3DSA:3.30.565.10 572 720 1.4E-34 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 SMART SM00387 611 724 5.7E-30 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 SMART SM00086 302 345 0.11 T 26-04-2016 IPR001610 PAC motif RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 SMART SM00086 429 471 0.009 T 26-04-2016 IPR001610 PAC motif RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 Gene3D G3DSA:3.30.450.20 335 377 1.3E-4 T 26-04-2016 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 SMART SM00388 502 570 0.0017 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 SUPERFAMILY SSF55785 224 343 1.31E-11 T 26-04-2016 IPR000014 PAS domain RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 PANTHER PTHR24423 225 720 1.3E-83 T 26-04-2016 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 Gene3D G3DSA:1.10.287.130 498 566 1.2E-5 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS08440 4010a19b682e37832854a9a70c4b8961 725 SUPERFAMILY SSF55785 342 469 1.38E-15 T 26-04-2016 IPR000014 PAS domain RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 Gene3D G3DSA:1.10.240.10 244 340 1.6E-31 T 26-04-2016 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 Gene3D G3DSA:3.40.50.620 24 243 4.1E-80 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 PANTHER PTHR11766 16 410 1.1E-217 T 26-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 Pfam PF01479 S4 domain 353 394 9.5E-7 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 Pfam PF00579 tRNA synthetases class I (W and Y) 48 329 1.5E-74 T 26-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 24 409 2.9E-118 T 26-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 14 410 46.742 T 26-04-2016 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 177 192 3.3E-24 T 26-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 227 239 3.3E-24 T 26-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 194 216 3.3E-24 T 26-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 62 84 3.3E-24 T 26-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 SUPERFAMILY SSF55174 332 407 1.57E-17 T 26-04-2016 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 PANTHER PTHR11766:SF1 16 410 1.1E-217 T 26-04-2016 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 Gene3D G3DSA:3.10.290.10 341 410 1.5E-23 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 68 - T 26-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 SUPERFAMILY SSF52374 19 329 3.34E-89 T 26-04-2016 RGE_RS03745 0927c8e6ac5bd3c92c50c9316ef12248 412 SMART SM00363 350 411 5.3E-6 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS04490 6969b82935f6f8a29e30a7bce7a314cd 217 PANTHER PTHR30328:SF19 1 202 3.8E-35 T 26-04-2016 RGE_RS04490 6969b82935f6f8a29e30a7bce7a314cd 217 Gene3D G3DSA:1.10.10.60 11 70 5.2E-14 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04490 6969b82935f6f8a29e30a7bce7a314cd 217 SUPERFAMILY SSF46689 17 83 5.64E-14 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04490 6969b82935f6f8a29e30a7bce7a314cd 217 SUPERFAMILY SSF48498 92 205 2.53E-25 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS04490 6969b82935f6f8a29e30a7bce7a314cd 217 Gene3D G3DSA:1.10.357.10 71 207 3.5E-59 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS04490 6969b82935f6f8a29e30a7bce7a314cd 217 PANTHER PTHR30328 1 202 3.8E-35 T 26-04-2016 RGE_RS04490 6969b82935f6f8a29e30a7bce7a314cd 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 67 2.0E-7 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS09415 c76a1a92049ed128e4e2aad0402f13e5 297 PANTHER PTHR24220:SF165 276 291 2.3E-72 T 26-04-2016 RGE_RS09415 c76a1a92049ed128e4e2aad0402f13e5 297 PANTHER PTHR24220:SF165 8 235 2.3E-72 T 26-04-2016 RGE_RS09415 c76a1a92049ed128e4e2aad0402f13e5 297 SUPERFAMILY SSF52540 6 228 1.03E-55 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09415 c76a1a92049ed128e4e2aad0402f13e5 297 Gene3D G3DSA:3.40.50.300 3 221 7.8E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09415 c76a1a92049ed128e4e2aad0402f13e5 297 PANTHER PTHR24220 276 291 2.3E-72 T 26-04-2016 RGE_RS09415 c76a1a92049ed128e4e2aad0402f13e5 297 PANTHER PTHR24220 8 235 2.3E-72 T 26-04-2016 RGE_RS09415 c76a1a92049ed128e4e2aad0402f13e5 297 SMART SM00382 31 207 4.1E-8 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS09415 c76a1a92049ed128e4e2aad0402f13e5 297 Pfam PF00005 ABC transporter 22 159 3.2E-23 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS09415 c76a1a92049ed128e4e2aad0402f13e5 297 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS13890 2fb4278ceee6e6097bce727664cf8494 341 Pfam PF02470 MlaD protein 42 137 4.2E-12 T 26-04-2016 IPR003399 Mce/MlaD RGE_RS14130 6bcc4cbf3614a32146a9136c10f613ec 557 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 329 340 - T 26-04-2016 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RGE_RS14130 6bcc4cbf3614a32146a9136c10f613ec 557 SUPERFAMILY SSF52540 4 555 5.84E-233 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS14130 6bcc4cbf3614a32146a9136c10f613ec 557 Gene3D G3DSA:3.10.410.10 445 533 5.5E-33 T 26-04-2016 RGE_RS14130 6bcc4cbf3614a32146a9136c10f613ec 557 PANTHER PTHR10025 1 556 0.0 T 26-04-2016 RGE_RS14130 6bcc4cbf3614a32146a9136c10f613ec 557 Gene3D G3DSA:3.40.50.300 14 129 1.0E-142 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS14130 6bcc4cbf3614a32146a9136c10f613ec 557 Gene3D G3DSA:3.40.50.300 249 442 1.0E-142 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS14130 6bcc4cbf3614a32146a9136c10f613ec 557 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 1 557 47.239 T 26-04-2016 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RGE_RS14130 6bcc4cbf3614a32146a9136c10f613ec 557 Pfam PF01268 Formate--tetrahydrofolate ligase 3 557 6.5E-256 T 26-04-2016 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RGE_RS14130 6bcc4cbf3614a32146a9136c10f613ec 557 Gene3D G3DSA:3.30.1510.10 130 248 1.0E-52 T 26-04-2016 RGE_RS14130 6bcc4cbf3614a32146a9136c10f613ec 557 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 104 114 - T 26-04-2016 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 PANTHER PTHR19376:SF32 961 1156 0.0 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 PANTHER PTHR19376:SF32 1175 1260 0.0 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 PANTHER PTHR19376:SF32 569 942 0.0 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 PANTHER PTHR19376:SF32 4 549 0.0 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 PANTHER PTHR19376:SF32 1301 1393 0.0 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 Gene3D G3DSA:2.40.40.20 347 374 7.6E-37 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 Gene3D G3DSA:2.40.40.20 415 487 7.6E-37 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1363 0.0 T 26-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 Pfam PF04997 RNA polymerase Rpb1, domain 1 16 340 6.7E-83 T 26-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 SMART SM00663 233 512 6.3E-171 T 26-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 Pfam PF00623 RNA polymerase Rpb1, domain 2 390 483 2.2E-27 T 26-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 Pfam PF00623 RNA polymerase Rpb1, domain 2 342 393 1.1E-7 T 26-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 15 1374 10.353 T 26-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 PANTHER PTHR19376 961 1156 0.0 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 PANTHER PTHR19376 1175 1260 0.0 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 PANTHER PTHR19376 569 942 0.0 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 PANTHER PTHR19376 4 549 0.0 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 PANTHER PTHR19376 1301 1393 0.0 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 Pfam PF04983 RNA polymerase Rpb1, domain 3 487 643 1.4E-23 T 26-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 SUPERFAMILY SSF64484 1132 1361 0.0 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 SUPERFAMILY SSF64484 17 943 0.0 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 Gene3D G3DSA:2.40.50.100 1155 1206 4.1E-8 T 26-04-2016 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 Pfam PF05000 RNA polymerase Rpb1, domain 4 673 762 7.7E-19 T 26-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01575 35fc92e423d1aa5b0583697502d19871 1409 Pfam PF04998 RNA polymerase Rpb1, domain 5 765 1312 4.9E-76 T 26-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS13640 57c7cd697de2631671563cf121706c44 429 PANTHER PTHR10742 3 285 4.0E-22 T 26-04-2016 RGE_RS13640 57c7cd697de2631671563cf121706c44 429 SUPERFAMILY SSF51905 3 296 1.91E-43 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13640 57c7cd697de2631671563cf121706c44 429 SUPERFAMILY SSF51905 374 417 1.91E-43 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13640 57c7cd697de2631671563cf121706c44 429 TIGRFAM TIGR03467 HpnE: squalene-associated FAD-dependent desaturase 4 417 4.3E-98 T 26-04-2016 IPR017830 Squalene-associated FAD-dependent desaturase RGE_RS13640 57c7cd697de2631671563cf121706c44 429 PRINTS PR00419 Adrenodoxin reductase family signature 3 25 1.3E-6 T 26-04-2016 RGE_RS13640 57c7cd697de2631671563cf121706c44 429 PRINTS PR00419 Adrenodoxin reductase family signature 26 39 1.3E-6 T 26-04-2016 RGE_RS13640 57c7cd697de2631671563cf121706c44 429 Pfam PF01593 Flavin containing amine oxidoreductase 12 415 7.1E-23 T 26-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RGE_RS13640 57c7cd697de2631671563cf121706c44 429 Gene3D G3DSA:3.50.50.60 2 40 2.3E-27 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13640 57c7cd697de2631671563cf121706c44 429 Gene3D G3DSA:3.50.50.60 377 421 2.3E-27 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13640 57c7cd697de2631671563cf121706c44 429 Gene3D G3DSA:3.50.50.60 210 275 2.3E-27 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 SUPERFAMILY SSF64484 353 949 0.0 T 26-04-2016 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 SUPERFAMILY SSF64484 1062 1371 0.0 T 26-04-2016 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 SUPERFAMILY SSF64484 16 235 0.0 T 26-04-2016 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Pfam PF04560 RNA polymerase Rpb2, domain 7 1297 1371 5.6E-27 T 26-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Pfam PF10385 RNA polymerase beta subunit external 1 domain 601 666 4.1E-25 T 26-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Gene3D G3DSA:2.30.150.10 602 666 1.4E-29 T 26-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Gene3D G3DSA:3.90.1100.10 669 723 3.9E-143 T 26-04-2016 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Gene3D G3DSA:3.90.1100.10 455 601 3.9E-143 T 26-04-2016 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Gene3D G3DSA:3.90.1100.10 24 160 3.9E-143 T 26-04-2016 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Gene3D G3DSA:2.40.50.100 725 802 1.6E-28 T 26-04-2016 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Pfam PF04561 RNA polymerase Rpb2, domain 2 160 234 2.8E-7 T 26-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Pfam PF04561 RNA polymerase Rpb2, domain 2 366 464 1.5E-13 T 26-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Pfam PF04565 RNA polymerase Rpb2, domain 3 523 590 1.0E-31 T 26-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 17 1373 12.156 T 26-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 PANTHER PTHR20856 1057 1151 0.0 T 26-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 PANTHER PTHR20856 9 239 0.0 T 26-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 PANTHER PTHR20856 350 735 0.0 T 26-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 PANTHER PTHR20856 753 940 0.0 T 26-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 PANTHER PTHR20856 1203 1373 0.0 T 26-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Gene3D G3DSA:3.90.1110.10 356 454 4.5E-62 T 26-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Gene3D G3DSA:3.90.1110.10 162 239 4.5E-62 T 26-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Pfam PF04563 RNA polymerase beta subunit 30 510 6.5E-34 T 26-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 PANTHER PTHR20856:SF20 1057 1151 0.0 T 26-04-2016 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 PANTHER PTHR20856:SF20 9 239 0.0 T 26-04-2016 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 PANTHER PTHR20856:SF20 350 735 0.0 T 26-04-2016 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 PANTHER PTHR20856:SF20 753 940 0.0 T 26-04-2016 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 PANTHER PTHR20856:SF20 1203 1373 0.0 T 26-04-2016 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Gene3D G3DSA:2.40.50.150 1068 1082 5.0E-57 T 26-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Gene3D G3DSA:2.40.50.150 838 947 5.0E-57 T 26-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Gene3D G3DSA:2.40.270.10 803 830 1.4E-85 T 26-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Gene3D G3DSA:2.40.270.10 1083 1273 1.4E-85 T 26-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 13 1370 0.0 T 26-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 Pfam PF00562 RNA polymerase Rpb2, domain 6 728 1295 5.1E-157 T 26-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS01570 ecad2ebea20b2ba9c26eef0778f28cbc 1373 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1086 1098 - T 26-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RGE_RS04320 0d57a71d2044920f4df819a2ca19c52c 552 PANTHER PTHR11059 2 548 7.2E-136 T 26-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RGE_RS04320 0d57a71d2044920f4df819a2ca19c52c 552 SUPERFAMILY SSF52540 1 213 1.61E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04320 0d57a71d2044920f4df819a2ca19c52c 552 Pfam PF02463 RecF/RecN/SMC N terminal domain 14 505 1.0E-13 T 26-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RGE_RS04320 0d57a71d2044920f4df819a2ca19c52c 552 PIRSF PIRSF003128 1 551 8.2E-143 T 26-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RGE_RS04320 0d57a71d2044920f4df819a2ca19c52c 552 SUPERFAMILY SSF52540 301 502 4.57E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04320 0d57a71d2044920f4df819a2ca19c52c 552 SUPERFAMILY SSF52540 3 50 4.57E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04320 0d57a71d2044920f4df819a2ca19c52c 552 Gene3D G3DSA:3.40.50.300 393 503 6.9E-6 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04320 0d57a71d2044920f4df819a2ca19c52c 552 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 547 4.7E-138 T 26-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RGE_RS04320 0d57a71d2044920f4df819a2ca19c52c 552 Gene3D G3DSA:3.40.50.300 1 201 2.8E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13760 7cafe8c77dae598283d19ea9ac6fe069 121 Pfam PF02033 Ribosome-binding factor A 10 110 1.9E-27 T 26-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RGE_RS13760 7cafe8c77dae598283d19ea9ac6fe069 121 PANTHER PTHR33515 6 121 3.4E-27 T 26-04-2016 RGE_RS13760 7cafe8c77dae598283d19ea9ac6fe069 121 Gene3D G3DSA:3.30.300.20 9 117 3.1E-34 T 26-04-2016 IPR015946 K homology domain-like, alpha/beta RGE_RS13760 7cafe8c77dae598283d19ea9ac6fe069 121 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 117 19.529 T 26-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RGE_RS13760 7cafe8c77dae598283d19ea9ac6fe069 121 SUPERFAMILY SSF89919 7 113 1.7E-28 T 26-04-2016 IPR023799 Ribosome-binding factor A domain RGE_RS13760 7cafe8c77dae598283d19ea9ac6fe069 121 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 9 112 1.3E-23 T 26-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RGE_RS13760 7cafe8c77dae598283d19ea9ac6fe069 121 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 13 97 5.0E-34 T 26-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RGE_RS15270 af1b1acb0cbd87b41aa99aebcabfa552 464 Pfam PF02321 Outer membrane efflux protein 280 456 5.5E-22 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS15270 af1b1acb0cbd87b41aa99aebcabfa552 464 Pfam PF02321 Outer membrane efflux protein 55 247 2.4E-21 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS15270 af1b1acb0cbd87b41aa99aebcabfa552 464 SUPERFAMILY SSF56954 2 460 4.45E-94 T 26-04-2016 RGE_RS15270 af1b1acb0cbd87b41aa99aebcabfa552 464 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 2 458 8.2E-122 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS15270 af1b1acb0cbd87b41aa99aebcabfa552 464 PANTHER PTHR30203:SF6 3 460 6.2E-121 T 26-04-2016 RGE_RS15270 af1b1acb0cbd87b41aa99aebcabfa552 464 PANTHER PTHR30203 3 460 6.2E-121 T 26-04-2016 RGE_RS15270 af1b1acb0cbd87b41aa99aebcabfa552 464 Gene3D G3DSA:1.20.1600.10 135 307 3.3E-83 T 26-04-2016 RGE_RS15270 af1b1acb0cbd87b41aa99aebcabfa552 464 Gene3D G3DSA:1.20.1600.10 345 459 3.3E-83 T 26-04-2016 RGE_RS15270 af1b1acb0cbd87b41aa99aebcabfa552 464 Gene3D G3DSA:1.20.1600.10 41 81 3.3E-83 T 26-04-2016 RGE_RS15270 af1b1acb0cbd87b41aa99aebcabfa552 464 Gene3D G3DSA:2.20.200.10 92 134 2.8E-24 T 26-04-2016 RGE_RS15270 af1b1acb0cbd87b41aa99aebcabfa552 464 Gene3D G3DSA:2.20.200.10 308 343 2.8E-24 T 26-04-2016 RGE_RS20110 a3c81e6bc5152d963de25fb9ffd50fca 252 Gene3D G3DSA:3.30.950.10 136 238 5.7E-21 T 26-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RGE_RS20110 a3c81e6bc5152d963de25fb9ffd50fca 252 SUPERFAMILY SSF53790 4 242 2.22E-52 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS20110 a3c81e6bc5152d963de25fb9ffd50fca 252 PANTHER PTHR21091 41 198 5.5E-20 T 26-04-2016 RGE_RS20110 a3c81e6bc5152d963de25fb9ffd50fca 252 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 52 215 7.3E-9 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS20110 a3c81e6bc5152d963de25fb9ffd50fca 252 PANTHER PTHR21091:SF18 41 198 5.5E-20 T 26-04-2016 RGE_RS22200 a1ad3bdccda0de2fdb5b3492c8deecd7 205 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 74 1.0E-17 T 26-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RGE_RS22200 a1ad3bdccda0de2fdb5b3492c8deecd7 205 SUPERFAMILY SSF52833 1 100 1.66E-22 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS22200 a1ad3bdccda0de2fdb5b3492c8deecd7 205 Gene3D G3DSA:1.20.1050.10 89 200 7.3E-21 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS22200 a1ad3bdccda0de2fdb5b3492c8deecd7 205 SUPERFAMILY SSF47616 68 203 2.65E-25 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS22200 a1ad3bdccda0de2fdb5b3492c8deecd7 205 Pfam PF13410 Glutathione S-transferase, C-terminal domain 122 186 3.7E-12 T 26-04-2016 RGE_RS22200 a1ad3bdccda0de2fdb5b3492c8deecd7 205 PANTHER PTHR11260:SF256 1 204 4.5E-43 T 26-04-2016 RGE_RS22200 a1ad3bdccda0de2fdb5b3492c8deecd7 205 PANTHER PTHR11260 1 204 4.5E-43 T 26-04-2016 RGE_RS22200 a1ad3bdccda0de2fdb5b3492c8deecd7 205 Gene3D G3DSA:3.40.30.10 1 88 1.4E-25 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 Pfam PF01274 Malate synthase 16 701 7.8E-171 T 26-04-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 PANTHER PTHR21631 502 727 2.3E-136 T 26-04-2016 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 PANTHER PTHR21631 29 39 2.3E-136 T 26-04-2016 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 PANTHER PTHR21631:SF7 502 727 2.3E-136 T 26-04-2016 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 PANTHER PTHR21631:SF7 29 39 2.3E-136 T 26-04-2016 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 727 0.0 T 26-04-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 SUPERFAMILY SSF51645 2 727 3.79E-291 T 26-04-2016 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 Gene3D G3DSA:2.170.170.11 134 262 1.2E-65 T 26-04-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 Gene3D G3DSA:2.170.170.11 296 333 1.2E-65 T 26-04-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 Hamap MF_00641 Malate synthase G [glcB]. 1 729 386.317 T 26-04-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 Gene3D G3DSA:3.20.20.360 87 133 1.3E-139 T 26-04-2016 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 Gene3D G3DSA:3.20.20.360 334 594 1.3E-139 T 26-04-2016 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 Gene3D G3DSA:3.20.20.360 264 294 1.3E-139 T 26-04-2016 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 Gene3D G3DSA:1.10.1860.10 2 86 2.0E-34 T 26-04-2016 RGE_RS22410 25a5f4e9bddd84cbc765ed01892c0ac9 729 Gene3D G3DSA:1.20.1220.12 596 728 1.6E-74 T 26-04-2016 RGE_RS02345 19b4bb5954287e05e906c957ca5fac9c 473 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 61 444 1.6E-47 T 26-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RGE_RS02345 19b4bb5954287e05e906c957ca5fac9c 473 Gene3D G3DSA:3.40.710.10 41 86 2.5E-5 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS02345 19b4bb5954287e05e906c957ca5fac9c 473 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 37 465 9.5E-72 T 26-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RGE_RS02345 19b4bb5954287e05e906c957ca5fac9c 473 SUPERFAMILY SSF56601 22 465 2.39E-84 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS02345 19b4bb5954287e05e906c957ca5fac9c 473 PANTHER PTHR30023:SF0 15 470 7.8E-69 T 26-04-2016 RGE_RS02345 19b4bb5954287e05e906c957ca5fac9c 473 PANTHER PTHR30023 15 470 7.8E-69 T 26-04-2016 RGE_RS02345 19b4bb5954287e05e906c957ca5fac9c 473 Gene3D G3DSA:3.40.710.10 231 465 1.5E-64 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS02345 19b4bb5954287e05e906c957ca5fac9c 473 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 288 310 6.8E-21 T 26-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RGE_RS02345 19b4bb5954287e05e906c957ca5fac9c 473 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 348 362 6.8E-21 T 26-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RGE_RS02345 19b4bb5954287e05e906c957ca5fac9c 473 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 64 83 6.8E-21 T 26-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RGE_RS02345 19b4bb5954287e05e906c957ca5fac9c 473 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 423 436 6.8E-21 T 26-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RGE_RS02345 19b4bb5954287e05e906c957ca5fac9c 473 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 363 377 6.8E-21 T 26-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 SUPERFAMILY SSF56059 102 316 4.07E-62 T 26-04-2016 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 Gene3D G3DSA:3.30.1490.20 119 183 9.1E-28 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 Gene3D G3DSA:3.30.470.20 184 321 3.6E-61 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 Gene3D G3DSA:3.40.50.20 2 93 1.1E-37 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 324 413 3.5E-27 T 26-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 SUPERFAMILY SSF52440 1 101 2.59E-35 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 SMART SM01210 323 415 5.4E-48 T 26-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 283 290 - T 26-04-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 SMART SM01209 101 289 7.1E-131 T 26-04-2016 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 SUPERFAMILY SSF51246 322 415 6.51E-29 T 26-04-2016 IPR011054 Rudiment single hybrid motif RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 415 1.9E-165 T 26-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 415 42.465 T 26-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 289 2.2E-73 T 26-04-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 Gene3D G3DSA:3.90.600.10 324 415 2.8E-32 T 26-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 PANTHER PTHR10520 1 417 1.3E-258 T 26-04-2016 RGE_RS18830 91104c307bdd6c6a99e7d7270a86215d 417 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 2.5E-36 T 26-04-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SUPERFAMILY SSF55785 523 632 3.38E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 763 870 3.9E-24 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SUPERFAMILY SSF47384 641 719 5.69E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SUPERFAMILY SSF55785 402 511 1.26E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SUPERFAMILY SSF55785 267 377 3.32E-17 T 26-04-2016 IPR000014 PAS domain RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 271 382 1.2E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SMART SM00387 762 873 1.6E-31 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Gene3D G3DSA:3.40.50.2300 898 1018 9.9E-34 T 26-04-2016 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SMART SM00388 649 718 9.9E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SUPERFAMILY SSF55874 707 869 2.1E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 PANTHER PTHR24423 230 461 1.5E-136 T 26-04-2016 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 PANTHER PTHR24423 588 1019 1.5E-136 T 26-04-2016 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 PRINTS PR00344 Bacterial sensor protein C-terminal signature 833 851 1.2E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 PRINTS PR00344 Bacterial sensor protein C-terminal signature 857 870 1.2E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 PRINTS PR00344 Bacterial sensor protein C-terminal signature 817 827 1.2E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 PRINTS PR00344 Bacterial sensor protein C-terminal signature 799 813 1.2E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SMART SM00086 588 630 0.0096 T 26-04-2016 IPR001610 PAC motif RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SMART SM00086 206 248 150.0 T 26-04-2016 IPR001610 PAC motif RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SMART SM00086 334 377 1.9E-8 T 26-04-2016 IPR001610 PAC motif RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Pfam PF08447 PAS fold 539 623 2.4E-11 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Pfam PF08447 PAS fold 410 481 6.8E-8 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Pfam PF08447 PAS fold 283 371 1.4E-10 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SUPERFAMILY SSF52172 900 1019 1.85E-32 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SMART SM00091 260 328 0.68 T 26-04-2016 IPR000014 PAS domain RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SMART SM00091 17 84 1.5 T 26-04-2016 IPR000014 PAS domain RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SMART SM00091 389 456 140.0 T 26-04-2016 IPR000014 PAS domain RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Gene3D G3DSA:3.30.450.20 492 642 7.2E-25 T 26-04-2016 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Pfam PF00072 Response regulator receiver domain 903 1015 1.2E-21 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SUPERFAMILY SSF55785 23 108 4.71E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Pfam PF00512 His Kinase A (phospho-acceptor) domain 649 718 3.4E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Gene3D G3DSA:3.30.450.20 385 483 1.9E-11 T 26-04-2016 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Gene3D G3DSA:3.30.450.20 119 244 2.0E-7 T 26-04-2016 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Gene3D G3DSA:3.30.450.20 262 375 1.8E-18 T 26-04-2016 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Gene3D G3DSA:1.10.287.130 646 713 6.7E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Gene3D G3DSA:3.30.565.10 720 869 3.8E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 Gene3D G3DSA:3.30.450.20 23 118 5.9E-8 T 26-04-2016 RGE_RS10495 34b4ff0507c082834712275bb938095c 1024 SMART SM00448 901 1015 6.2E-31 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11420 358d00e8bd111b96c54367c6f9e9d430 243 PIRSF PIRSF000857 2 241 3.4E-81 T 26-04-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 RGE_RS11420 358d00e8bd111b96c54367c6f9e9d430 243 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 37 210 3.6E-41 T 26-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 RGE_RS11420 358d00e8bd111b96c54367c6f9e9d430 243 Gene3D G3DSA:3.40.50.620 14 206 5.9E-53 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS11420 358d00e8bd111b96c54367c6f9e9d430 243 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 42 234 8.1E-73 T 26-04-2016 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 RGE_RS11420 358d00e8bd111b96c54367c6f9e9d430 243 PANTHER PTHR23293 18 235 1.1E-62 T 26-04-2016 RGE_RS11420 358d00e8bd111b96c54367c6f9e9d430 243 PANTHER PTHR23293:SF5 18 235 1.1E-62 T 26-04-2016 RGE_RS11420 358d00e8bd111b96c54367c6f9e9d430 243 SUPERFAMILY SSF52402 15 197 1.51E-48 T 26-04-2016 RGE_RS11420 358d00e8bd111b96c54367c6f9e9d430 243 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 29 235 3.7E-52 T 26-04-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 Gene3D G3DSA:3.30.565.10 723 878 4.8E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 PRINTS PR00344 Bacterial sensor protein C-terminal signature 838 856 1.2E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 PRINTS PR00344 Bacterial sensor protein C-terminal signature 803 817 1.2E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 PRINTS PR00344 Bacterial sensor protein C-terminal signature 862 875 1.2E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 Gene3D G3DSA:1.20.120.160 1040 1133 1.6E-13 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 SUPERFAMILY SSF47226 1048 1130 1.57E-14 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 SUPERFAMILY SSF47226 997 1010 1.57E-14 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 SUPERFAMILY SSF55785 378 497 1.05E-18 T 26-04-2016 IPR000014 PAS domain RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 SMART SM00387 762 878 1.3E-29 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 SUPERFAMILY SSF55874 705 874 1.96E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 Gene3D G3DSA:3.30.450.20 380 498 4.0E-21 T 26-04-2016 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 SMART SM00388 656 716 3.7E-9 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 SUPERFAMILY SSF55785 499 616 1.67E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 SMART SM00448 903 1014 5.6E-32 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 Gene3D G3DSA:3.30.450.20 499 616 1.6E-10 T 26-04-2016 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 Pfam PF00512 His Kinase A (phospho-acceptor) domain 657 716 1.4E-7 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 386 503 1.8E-15 T 26-04-2016 IPR000014 PAS domain RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 Gene3D G3DSA:3.40.50.2300 902 1029 7.4E-38 T 26-04-2016 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 SMART SM00091 388 454 2.9E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 Gene3D G3DSA:1.10.287.130 649 711 1.9E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 762 876 6.0E-22 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 Pfam PF01627 Hpt domain 1069 1150 4.9E-9 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 PANTHER PTHR24423 635 1018 1.6E-127 T 26-04-2016 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 PANTHER PTHR24423 386 497 1.6E-127 T 26-04-2016 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 Pfam PF08448 PAS fold 395 500 7.7E-19 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 SUPERFAMILY SSF52172 904 1019 2.56E-35 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 Pfam PF00072 Response regulator receiver domain 905 1013 3.8E-26 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS07115 cebb0eff219d9be497d7a60b123fd1b5 1233 SUPERFAMILY SSF47384 643 717 6.08E-12 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11625 1a046552d95aca05cb531b2b3bec0409 319 PANTHER PTHR41542:SF1 1 315 1.1E-41 T 26-04-2016 RGE_RS11625 1a046552d95aca05cb531b2b3bec0409 319 SUPERFAMILY SSF54427 179 315 8.76E-14 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS11625 1a046552d95aca05cb531b2b3bec0409 319 SMART SM00978 183 314 9.0E-38 T 26-04-2016 IPR007379 Tim44-like domain RGE_RS11625 1a046552d95aca05cb531b2b3bec0409 319 PANTHER PTHR41542 1 315 1.1E-41 T 26-04-2016 RGE_RS11625 1a046552d95aca05cb531b2b3bec0409 319 Pfam PF04280 Tim44-like domain 193 314 2.1E-16 T 26-04-2016 IPR007379 Tim44-like domain RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 PRINTS PR00834 HtrA/DegQ protease family signature 225 242 4.7E-53 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 PRINTS PR00834 HtrA/DegQ protease family signature 193 217 4.7E-53 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 PRINTS PR00834 HtrA/DegQ protease family signature 153 173 4.7E-53 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 PRINTS PR00834 HtrA/DegQ protease family signature 247 264 4.7E-53 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 PRINTS PR00834 HtrA/DegQ protease family signature 132 144 4.7E-53 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 PRINTS PR00834 HtrA/DegQ protease family signature 333 345 4.7E-53 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 SMART SM00228 293 375 3.4E-11 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 SMART SM00228 407 485 1.3E-9 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 SUPERFAMILY SSF50156 251 376 3.15E-23 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 Gene3D G3DSA:2.40.10.10 185 295 5.9E-44 T 26-04-2016 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 Pfam PF13180 PDZ domain 409 489 6.6E-8 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 Pfam PF13180 PDZ domain 293 384 2.5E-17 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 Pfam PF13365 Trypsin-like peptidase domain 123 254 9.7E-36 T 26-04-2016 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 PANTHER PTHR22939 48 73 2.8E-127 T 26-04-2016 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 PANTHER PTHR22939 105 388 2.8E-127 T 26-04-2016 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 Gene3D G3DSA:2.40.10.10 109 182 3.9E-36 T 26-04-2016 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 Gene3D G3DSA:2.40.10.10 41 71 3.9E-36 T 26-04-2016 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 SUPERFAMILY SSF50494 50 284 1.26E-65 T 26-04-2016 IPR009003 Peptidase S1, PA clan RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 PANTHER PTHR22939:SF98 48 73 2.8E-127 T 26-04-2016 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 PANTHER PTHR22939:SF98 105 388 2.8E-127 T 26-04-2016 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 Gene3D G3DSA:2.30.42.10 296 390 6.2E-29 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 Gene3D G3DSA:2.30.42.10 408 495 7.1E-17 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 SUPERFAMILY SSF50156 407 494 2.23E-13 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS20040 b30941a1b0575d017eb26bcd0a1a630c 496 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 51 491 4.2E-148 T 26-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RGE_RS22425 528db6e6197910728ea6b139b2f11a3e 96 Pfam PF07769 psiF repeat 24 54 4.4E-17 T 26-04-2016 IPR011690 Phosphate-starvation-induced PsiF repeat RGE_RS22425 528db6e6197910728ea6b139b2f11a3e 96 Pfam PF07769 psiF repeat 62 91 1.5E-16 T 26-04-2016 IPR011690 Phosphate-starvation-induced PsiF repeat RGE_RS20415 d9014ad3fade2193f139525017db7ed9 228 PANTHER PTHR11907 10 228 7.5E-49 T 26-04-2016 RGE_RS20415 d9014ad3fade2193f139525017db7ed9 228 Pfam PF00156 Phosphoribosyl transferase domain 180 227 2.4E-9 T 26-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RGE_RS20415 d9014ad3fade2193f139525017db7ed9 228 Gene3D G3DSA:3.40.50.2020 53 228 8.9E-35 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS20415 d9014ad3fade2193f139525017db7ed9 228 SUPERFAMILY SSF53271 45 227 3.54E-34 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS20415 d9014ad3fade2193f139525017db7ed9 228 PANTHER PTHR11907:SF9 10 228 7.5E-49 T 26-04-2016 RGE_RS07860 2ca6bc3aa12972e92982616dc6be2640 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 261 1.1E-50 T 26-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RGE_RS07860 2ca6bc3aa12972e92982616dc6be2640 264 Gene3D G3DSA:3.90.226.10 4 201 4.2E-57 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS07860 2ca6bc3aa12972e92982616dc6be2640 264 PANTHER PTHR11941 2 259 8.9E-115 T 26-04-2016 RGE_RS07860 2ca6bc3aa12972e92982616dc6be2640 264 Gene3D G3DSA:1.10.12.10 208 260 2.2E-13 T 26-04-2016 IPR014748 Crontonase, C-terminal RGE_RS07860 2ca6bc3aa12972e92982616dc6be2640 264 SUPERFAMILY SSF52096 5 260 5.12E-75 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS07860 2ca6bc3aa12972e92982616dc6be2640 264 PANTHER PTHR11941:SF28 2 259 8.9E-115 T 26-04-2016 RGE_RS00955 5aded63445b79669196904682abcaf82 323 SUPERFAMILY SSF103481 210 315 1.31E-5 T 26-04-2016 RGE_RS00955 5aded63445b79669196904682abcaf82 323 PANTHER PTHR12715:SF21 4 318 4.3E-111 T 26-04-2016 RGE_RS00955 5aded63445b79669196904682abcaf82 323 Pfam PF00892 EamA-like transporter family 9 116 6.5E-14 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS00955 5aded63445b79669196904682abcaf82 323 PANTHER PTHR12715 4 318 4.3E-111 T 26-04-2016 RGE_RS06860 a75406a130f74c6fa17b595d0db755bb 327 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 90 1.3E-11 T 26-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RGE_RS06860 a75406a130f74c6fa17b595d0db755bb 327 SUPERFAMILY SSF51735 111 269 4.27E-47 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06860 a75406a130f74c6fa17b595d0db755bb 327 Gene3D G3DSA:3.90.180.10 3 149 1.3E-49 T 26-04-2016 IPR011032 GroES-like RGE_RS06860 a75406a130f74c6fa17b595d0db755bb 327 Pfam PF00107 Zinc-binding dehydrogenase 154 262 7.4E-28 T 26-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RGE_RS06860 a75406a130f74c6fa17b595d0db755bb 327 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 143 164 - T 26-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RGE_RS06860 a75406a130f74c6fa17b595d0db755bb 327 PANTHER PTHR11695 16 327 1.8E-128 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS06860 a75406a130f74c6fa17b595d0db755bb 327 Gene3D G3DSA:3.40.50.720 150 293 4.8E-40 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06860 a75406a130f74c6fa17b595d0db755bb 327 SMART SM00829 11 325 3.7E-32 T 26-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RGE_RS06860 a75406a130f74c6fa17b595d0db755bb 327 PANTHER PTHR11695:SF605 16 327 1.8E-128 T 26-04-2016 RGE_RS06860 a75406a130f74c6fa17b595d0db755bb 327 SUPERFAMILY SSF50129 1 148 1.89E-40 T 26-04-2016 IPR011032 GroES-like RGE_RS15020 b3bf6b159e4e58e086d6d61b19c5a936 366 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS15020 b3bf6b159e4e58e086d6d61b19c5a936 366 SUPERFAMILY SSF55021 269 339 2.29E-5 T 26-04-2016 RGE_RS15020 b3bf6b159e4e58e086d6d61b19c5a936 366 Gene3D G3DSA:3.40.50.300 25 258 2.9E-84 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15020 b3bf6b159e4e58e086d6d61b19c5a936 366 Gene3D G3DSA:3.30.70.260 259 340 1.1E-8 T 26-04-2016 RGE_RS15020 b3bf6b159e4e58e086d6d61b19c5a936 366 PANTHER PTHR24220 28 264 6.8E-127 T 26-04-2016 RGE_RS15020 b3bf6b159e4e58e086d6d61b19c5a936 366 SMART SM00382 52 239 3.8E-16 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS15020 b3bf6b159e4e58e086d6d61b19c5a936 366 SUPERFAMILY SSF52540 27 261 2.25E-78 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15020 b3bf6b159e4e58e086d6d61b19c5a936 366 Pfam PF09383 NIL domain 290 339 3.3E-6 T 26-04-2016 IPR018449 NIL domain RGE_RS15020 b3bf6b159e4e58e086d6d61b19c5a936 366 PANTHER PTHR24220:SF186 28 264 6.8E-127 T 26-04-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 RGE_RS15020 b3bf6b159e4e58e086d6d61b19c5a936 366 Pfam PF00005 ABC transporter 43 191 1.5E-34 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 PANTHER PTHR30204 1 128 1.3E-50 T 26-04-2016 RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.0E-12 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.0E-12 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 2.0E-12 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 SMART SM00422 1 70 3.8E-34 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 Pfam PF09278 MerR, DNA binding 44 108 1.1E-19 T 26-04-2016 IPR015358 Transcription regulator MerR, DNA binding RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 1.1E-49 T 26-04-2016 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 Pfam PF00376 MerR family regulatory protein 2 39 2.9E-17 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 Gene3D G3DSA:1.10.1660.10 55 130 7.5E-33 T 26-04-2016 RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 PANTHER PTHR30204:SF16 1 128 1.3E-50 T 26-04-2016 RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 SUPERFAMILY SSF46955 1 126 2.64E-40 T 26-04-2016 IPR009061 Putative DNA-binding domain RGE_RS17665 bc690d2efa1cff5eb5859de8118b85c4 133 Gene3D G3DSA:1.10.1660.10 1 54 8.4E-27 T 26-04-2016 RGE_RS22955 a7613b7fad0b7a10530b25d5814b83ca 97 Pfam PF01809 Haemolytic domain 4 69 5.7E-26 T 26-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RGE_RS22955 a7613b7fad0b7a10530b25d5814b83ca 97 SMART SM01234 2 69 1.3E-37 T 26-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RGE_RS22955 a7613b7fad0b7a10530b25d5814b83ca 97 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 2 70 22.179 T 26-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RGE_RS22955 a7613b7fad0b7a10530b25d5814b83ca 97 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 6 75 2.0E-25 T 26-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RGE_RS22955 a7613b7fad0b7a10530b25d5814b83ca 97 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 18 69 7.0E-17 T 26-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RGE_RS22955 a7613b7fad0b7a10530b25d5814b83ca 97 PANTHER PTHR33383 5 97 2.2E-31 T 26-04-2016 RGE_RS15120 2c928c95a0339374a5dedaf2815331d8 282 PANTHER PTHR23024:SF145 32 144 1.1E-21 T 26-04-2016 RGE_RS15120 2c928c95a0339374a5dedaf2815331d8 282 SUPERFAMILY SSF53474 11 271 1.9E-35 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS15120 2c928c95a0339374a5dedaf2815331d8 282 Pfam PF00135 Carboxylesterase family 40 145 1.4E-13 T 26-04-2016 IPR002018 Carboxylesterase, type B RGE_RS15120 2c928c95a0339374a5dedaf2815331d8 282 PANTHER PTHR23024 32 144 1.1E-21 T 26-04-2016 RGE_RS15120 2c928c95a0339374a5dedaf2815331d8 282 Gene3D G3DSA:3.40.50.1820 22 271 1.0E-38 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS16635 625960a588ca09f24e885c01170e8c09 774 PANTHER PTHR22683 213 773 2.2E-261 T 26-04-2016 RGE_RS16635 625960a588ca09f24e885c01170e8c09 774 SMART SM00843 707 772 7.3E-37 T 26-04-2016 IPR018541 FtsK gamma domain RGE_RS16635 625960a588ca09f24e885c01170e8c09 774 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 28 205 6.0E-46 T 26-04-2016 IPR025199 DNA translocase FtsK, 4TM region RGE_RS16635 625960a588ca09f24e885c01170e8c09 774 SUPERFAMILY SSF52540 366 673 8.23E-51 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16635 625960a588ca09f24e885c01170e8c09 774 Pfam PF01580 FtsK/SpoIIIE family 392 601 8.6E-67 T 26-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RGE_RS16635 625960a588ca09f24e885c01170e8c09 774 PANTHER PTHR22683:SF41 213 773 2.2E-261 T 26-04-2016 RGE_RS16635 625960a588ca09f24e885c01170e8c09 774 Pfam PF09397 Ftsk gamma domain 709 769 2.2E-25 T 26-04-2016 IPR018541 FtsK gamma domain RGE_RS16635 625960a588ca09f24e885c01170e8c09 774 SUPERFAMILY SSF46785 707 772 4.08E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS16635 625960a588ca09f24e885c01170e8c09 774 Gene3D G3DSA:3.40.50.300 365 668 1.7E-97 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07655 e9bf2abbd838a37deebb44016ce68726 119 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 2 119 20.092 T 26-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 RGE_RS07655 e9bf2abbd838a37deebb44016ce68726 119 PANTHER PTHR11058:SF10 3 119 1.0E-66 T 26-04-2016 RGE_RS07655 e9bf2abbd838a37deebb44016ce68726 119 PANTHER PTHR11058 3 119 1.0E-66 T 26-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RGE_RS07655 e9bf2abbd838a37deebb44016ce68726 119 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 25 118 1.9E-40 T 26-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RGE_RS06120 1ee5907847d40ae07b9b5c57e685df1c 274 Gene3D G3DSA:3.30.70.580 16 118 3.7E-37 T 26-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS06120 1ee5907847d40ae07b9b5c57e685df1c 274 SUPERFAMILY SSF55120 16 265 2.3E-87 T 26-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS06120 1ee5907847d40ae07b9b5c57e685df1c 274 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 15 257 32.771 T 26-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS06120 1ee5907847d40ae07b9b5c57e685df1c 274 PANTHER PTHR11142 16 274 1.9E-86 T 26-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS06120 1ee5907847d40ae07b9b5c57e685df1c 274 PIRSF PIRSF001430 15 269 9.5E-70 T 26-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS06120 1ee5907847d40ae07b9b5c57e685df1c 274 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 16 251 3.5E-63 T 26-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS06120 1ee5907847d40ae07b9b5c57e685df1c 274 Pfam PF01416 tRNA pseudouridine synthase 156 258 1.5E-28 T 26-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS06120 1ee5907847d40ae07b9b5c57e685df1c 274 Gene3D G3DSA:3.30.70.660 120 253 2.0E-45 T 26-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS10580 6ad3a4d6839b31a8732062248a1d15e4 259 SUPERFAMILY SSF53335 16 248 4.4E-30 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS10580 6ad3a4d6839b31a8732062248a1d15e4 259 Gene3D G3DSA:3.40.50.150 16 243 2.7E-42 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 Pfam PF07690 Major Facilitator Superfamily 4 348 9.8E-48 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 PANTHER PTHR23504 1 395 1.8E-119 T 26-04-2016 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 ProSitePatterns PS00216 Sugar transport proteins signature 1. 58 74 - T 26-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 SUPERFAMILY SSF103473 3 397 8.24E-60 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 PRINTS PR01035 Tetracycline resistance protein signature 98 119 1.1E-54 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 PRINTS PR01035 Tetracycline resistance protein signature 128 150 1.1E-54 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 PRINTS PR01035 Tetracycline resistance protein signature 297 317 1.1E-54 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 PRINTS PR01035 Tetracycline resistance protein signature 332 355 1.1E-54 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 PRINTS PR01035 Tetracycline resistance protein signature 156 176 1.1E-54 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 PRINTS PR01035 Tetracycline resistance protein signature 71 95 1.1E-54 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 PRINTS PR01035 Tetracycline resistance protein signature 10 26 1.1E-54 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 PRINTS PR01035 Tetracycline resistance protein signature 272 293 1.1E-54 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 PRINTS PR01035 Tetracycline resistance protein signature 244 264 1.1E-54 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 PRINTS PR01035 Tetracycline resistance protein signature 40 59 1.1E-54 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 Gene3D G3DSA:1.20.1250.20 3 186 1.1E-35 T 26-04-2016 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 Gene3D G3DSA:1.20.1250.20 208 395 1.9E-15 T 26-04-2016 RGE_RS15065 233929b953e25f3a625e47dec02fcb74 403 PANTHER PTHR23504:SF18 1 395 1.8E-119 T 26-04-2016 RGE_RS19645 2266d3b9645aa60c41efdb8d991a069a 304 Pfam PF09176 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal 18 98 3.6E-35 T 26-04-2016 IPR015259 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal KEGG: 00380+1.5.1.-|KEGG: 00524+1.5.1.-|KEGG: 00680+1.5.1.-|UniPathway: UPA00562 RGE_RS19645 2266d3b9645aa60c41efdb8d991a069a 304 Gene3D G3DSA:3.40.50.10280 4 129 1.4E-59 T 26-04-2016 IPR015259 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal KEGG: 00380+1.5.1.-|KEGG: 00524+1.5.1.-|KEGG: 00680+1.5.1.-|UniPathway: UPA00562 RGE_RS19645 2266d3b9645aa60c41efdb8d991a069a 304 SUPERFAMILY SSF53223 4 98 5.75E-35 T 26-04-2016 RGE_RS19645 2266d3b9645aa60c41efdb8d991a069a 304 SUPERFAMILY SSF51735 115 225 5.79E-13 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS19645 2266d3b9645aa60c41efdb8d991a069a 304 Gene3D G3DSA:3.40.50.720 130 230 4.1E-13 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS07220 cc059061f1f43d3ac01fc4df03045849 424 PANTHER PTHR30304 42 423 3.2E-83 T 26-04-2016 RGE_RS07220 cc059061f1f43d3ac01fc4df03045849 424 SUPERFAMILY SSF142764 7 422 1.11E-128 T 26-04-2016 RGE_RS07220 cc059061f1f43d3ac01fc4df03045849 424 PANTHER PTHR30304:SF3 42 423 3.2E-83 T 26-04-2016 RGE_RS07220 cc059061f1f43d3ac01fc4df03045849 424 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 255 415 2.3E-45 T 26-04-2016 IPR031475 Putative nucleotide-binding C-terminal domain RGE_RS07220 cc059061f1f43d3ac01fc4df03045849 424 Pfam PF07005 Putative sugar-binding N-terminal domain 7 229 8.2E-72 T 26-04-2016 IPR010737 Putative sugar-binding, N-terminal domain RGE_RS04030 fc33ffda38c447a6fd02efce258ddd12 704 SUPERFAMILY SSF49373 250 342 9.02E-6 T 26-04-2016 IPR008964 Invasin/intimin cell-adhesion fragments RGE_RS04030 fc33ffda38c447a6fd02efce258ddd12 704 Gene3D G3DSA:2.60.40.920 265 342 5.6E-6 T 26-04-2016 IPR003344 Big-1 (bacterial Ig-like domain 1) domain RGE_RS04030 fc33ffda38c447a6fd02efce258ddd12 704 Gene3D G3DSA:2.60.40.920 374 425 6.6E-4 T 26-04-2016 IPR003344 Big-1 (bacterial Ig-like domain 1) domain RGE_RS04030 fc33ffda38c447a6fd02efce258ddd12 704 Gene3D G3DSA:2.60.40.920 36 123 4.4E-5 T 26-04-2016 IPR003344 Big-1 (bacterial Ig-like domain 1) domain RGE_RS04030 fc33ffda38c447a6fd02efce258ddd12 704 SUPERFAMILY SSF49373 37 125 1.28E-7 T 26-04-2016 IPR008964 Invasin/intimin cell-adhesion fragments RGE_RS07530 47f5955c129f76d5dada87e86bee61ba 114 SUPERFAMILY SSF102829 3 67 1.96E-16 T 26-04-2016 IPR007838 Cell division protein ZapA-like RGE_RS07530 47f5955c129f76d5dada87e86bee61ba 114 Pfam PF05164 Cell division protein ZapA 4 100 1.0E-17 T 26-04-2016 IPR007838 Cell division protein ZapA-like RGE_RS07530 47f5955c129f76d5dada87e86bee61ba 114 PANTHER PTHR34981 1 68 3.4E-12 T 26-04-2016 RGE_RS07530 47f5955c129f76d5dada87e86bee61ba 114 PANTHER PTHR34981:SF1 1 68 3.4E-12 T 26-04-2016 RGE_RS19075 ad81866a7b2f7647a0e3ff733358c2f4 159 Gene3D G3DSA:1.10.940.10 16 151 5.2E-39 T 26-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RGE_RS19075 ad81866a7b2f7647a0e3ff733358c2f4 159 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 18 143 3.2E-38 T 26-04-2016 IPR011605 NusB antitermination factor GO:0006353 RGE_RS19075 ad81866a7b2f7647a0e3ff733358c2f4 159 SUPERFAMILY SSF48013 15 147 8.5E-41 T 26-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RGE_RS19075 ad81866a7b2f7647a0e3ff733358c2f4 159 PANTHER PTHR11078 8 150 1.6E-36 T 26-04-2016 IPR011605 NusB antitermination factor GO:0006353 RGE_RS19075 ad81866a7b2f7647a0e3ff733358c2f4 159 Pfam PF01029 NusB family 20 143 2.3E-32 T 26-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RGE_RS19075 ad81866a7b2f7647a0e3ff733358c2f4 159 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 16 147 19.801 T 26-04-2016 IPR011605 NusB antitermination factor GO:0006353 RGE_RS10045 bbcb780beb5e1c12f60abe6fa3709969 270 Gene3D G3DSA:3.40.800.10 65 246 5.0E-26 T 26-04-2016 IPR023696 Ureohydrolase domain RGE_RS10045 bbcb780beb5e1c12f60abe6fa3709969 270 Pfam PF00491 Arginase family 91 246 3.6E-19 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS10045 bbcb780beb5e1c12f60abe6fa3709969 270 PANTHER PTHR11358:SF2 90 243 9.7E-22 T 26-04-2016 RGE_RS10045 bbcb780beb5e1c12f60abe6fa3709969 270 SUPERFAMILY SSF52768 87 245 5.4E-30 T 26-04-2016 RGE_RS10045 bbcb780beb5e1c12f60abe6fa3709969 270 PANTHER PTHR11358 90 243 9.7E-22 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 Gene3D G3DSA:1.20.1640.10 286 496 9.2E-59 T 26-04-2016 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 PANTHER PTHR32063:SF14 1 1016 0.0 T 26-04-2016 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 6.5E-77 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 6.5E-77 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 6.5E-77 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 6.5E-77 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 6.5E-77 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 6.5E-77 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 6.5E-77 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 6.5E-77 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 6.5E-77 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 SUPERFAMILY SSF82714 699 784 1.83E-18 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 SUPERFAMILY SSF82866 785 1006 8.63E-48 T 26-04-2016 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 Gene3D G3DSA:3.30.70.1430 555 648 1.8E-14 T 26-04-2016 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 SUPERFAMILY SSF82714 182 264 8.76E-20 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 SUPERFAMILY SSF82866 290 490 1.57E-48 T 26-04-2016 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 PANTHER PTHR32063 1 1016 0.0 T 26-04-2016 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 Gene3D G3DSA:3.30.2090.10 182 265 1.5E-25 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 Gene3D G3DSA:3.30.2090.10 699 782 2.4E-20 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 SUPERFAMILY SSF82693 267 323 9.59E-22 T 26-04-2016 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 SUPERFAMILY SSF82693 135 181 9.59E-22 T 26-04-2016 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 SUPERFAMILY SSF82693 553 648 2.46E-19 T 26-04-2016 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 Gene3D G3DSA:1.10.3850.10 791 1006 4.3E-62 T 26-04-2016 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 Pfam PF00873 AcrB/AcrD/AcrF family 4 1003 0.0 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 SUPERFAMILY SSF82693 40 134 3.66E-25 T 26-04-2016 RGE_RS15925 27c352fc37491bb72176466c184b72b3 1021 Gene3D G3DSA:3.30.70.1430 40 140 2.3E-29 T 26-04-2016 RGE_RS00655 349c8985718505bdc04b44753bdb4afe 301 SUPERFAMILY SSF53850 94 296 7.76E-46 T 26-04-2016 RGE_RS00655 349c8985718505bdc04b44753bdb4afe 301 PANTHER PTHR30419:SF3 1 294 1.3E-74 T 26-04-2016 RGE_RS00655 349c8985718505bdc04b44753bdb4afe 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.6E-21 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00655 349c8985718505bdc04b44753bdb4afe 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 3.2E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00655 349c8985718505bdc04b44753bdb4afe 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 3.2E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00655 349c8985718505bdc04b44753bdb4afe 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 3.2E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00655 349c8985718505bdc04b44753bdb4afe 301 SUPERFAMILY SSF46785 6 88 6.34E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00655 349c8985718505bdc04b44753bdb4afe 301 PANTHER PTHR30419 1 294 1.3E-74 T 26-04-2016 RGE_RS00655 349c8985718505bdc04b44753bdb4afe 301 Gene3D G3DSA:3.40.190.10 93 179 7.6E-17 T 26-04-2016 RGE_RS00655 349c8985718505bdc04b44753bdb4afe 301 Gene3D G3DSA:3.40.190.10 180 268 4.5E-21 T 26-04-2016 RGE_RS00655 349c8985718505bdc04b44753bdb4afe 301 Gene3D G3DSA:1.10.10.10 4 83 1.1E-26 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00655 349c8985718505bdc04b44753bdb4afe 301 Pfam PF03466 LysR substrate binding domain 93 294 1.0E-45 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 SMART SM00387 368 471 1.3E-19 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 433 1.9E-7 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 419 1.9E-7 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 453 1.9E-7 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 368 468 5.4E-15 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 Pfam PF00512 His Kinase A (phospho-acceptor) domain 267 328 5.3E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 SUPERFAMILY SSF47384 248 328 3.14E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 PANTHER PTHR24423 151 175 5.3E-54 T 26-04-2016 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 PANTHER PTHR24423 244 471 5.3E-54 T 26-04-2016 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 Pfam PF14827 Double sensory domain of two-component sensor kinase 98 177 5.1E-8 T 26-04-2016 IPR029150 Double Cache domain 3 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 SMART SM00388 264 329 9.3E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 SUPERFAMILY SSF103190 97 177 4.87E-5 T 26-04-2016 IPR029151 Periplasmic sensor domain-like RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 Gene3D G3DSA:3.30.450.20 93 176 1.9E-6 T 26-04-2016 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 SMART SM00304 208 264 4.7E-7 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 Pfam PF00672 HAMP domain 189 260 1.3E-10 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 Gene3D G3DSA:1.10.287.130 260 315 1.7E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 SUPERFAMILY SSF55874 319 471 1.57E-27 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS02680 f58f22688fe2b8d515f7ee8d7db45e83 471 Gene3D G3DSA:3.30.565.10 316 471 2.0E-29 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 SUPERFAMILY SSF55874 189 354 6.81E-39 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 SUPERFAMILY SSF158472 81 133 1.83E-6 T 26-04-2016 RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 SMART SM00388 136 200 1.3E-12 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 246 354 5.6E-19 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 281 295 2.9E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 299 309 2.9E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 334 2.9E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 Gene3D G3DSA:3.30.565.10 201 358 2.4E-39 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 SMART SM00387 245 356 2.8E-31 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 SUPERFAMILY SSF47384 119 201 2.55E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 PANTHER PTHR24423:SF508 75 353 3.7E-71 T 26-04-2016 RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 Gene3D G3DSA:1.10.287.130 126 194 6.0E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 PANTHER PTHR24423 75 353 3.7E-71 T 26-04-2016 RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 Pfam PF00512 His Kinase A (phospho-acceptor) domain 140 200 6.1E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 Pfam PF00672 HAMP domain 62 131 3.4E-11 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS14395 7b6b5e8b8ff426352a084349837e5d16 360 SMART SM00304 81 135 8.6E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS01420 55cf1ec9b88a5c82dcce5ce1476147c3 124 SUPERFAMILY SSF110069 4 124 6.02E-44 T 26-04-2016 IPR007474 ApaG domain RGE_RS01420 55cf1ec9b88a5c82dcce5ce1476147c3 124 Gene3D G3DSA:2.60.40.1470 6 122 1.8E-40 T 26-04-2016 IPR007474 ApaG domain RGE_RS01420 55cf1ec9b88a5c82dcce5ce1476147c3 124 Pfam PF04379 Protein of unknown function (DUF525) 17 100 2.8E-30 T 26-04-2016 IPR007474 ApaG domain RGE_RS01420 55cf1ec9b88a5c82dcce5ce1476147c3 124 PANTHER PTHR14289 9 121 2.7E-39 T 26-04-2016 RGE_RS01420 55cf1ec9b88a5c82dcce5ce1476147c3 124 Hamap MF_00791 Protein ApaG [apaG]. 1 124 28.53 T 26-04-2016 IPR023065 Uncharacterised protein family ApaG RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 PANTHER PTHR11624:SF67 473 537 0.0 T 26-04-2016 RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 PANTHER PTHR11624:SF67 788 860 0.0 T 26-04-2016 RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 PANTHER PTHR11624:SF67 555 769 0.0 T 26-04-2016 RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 PANTHER PTHR11624:SF67 365 456 0.0 T 26-04-2016 RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 PANTHER PTHR11624:SF67 77 296 0.0 T 26-04-2016 RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 Gene3D G3DSA:3.40.50.920 708 860 1.8E-57 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 10 859 0.0 T 26-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 PIRSF PIRSF000156 3 863 0.0 T 26-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 SUPERFAMILY SSF52922 703 860 2.28E-45 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 SUPERFAMILY SSF52518 474 701 5.06E-88 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 PANTHER PTHR11624 473 537 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 PANTHER PTHR11624 788 860 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 PANTHER PTHR11624 555 769 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 PANTHER PTHR11624 365 456 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 PANTHER PTHR11624 77 296 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 TIGRFAM TIGR03186 AKGDH_not_PDH: alpha-ketoglutarate dehydrogenase 10 859 0.0 T 26-04-2016 IPR017600 Alpha-ketoglutarate dehydrogenase RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 Gene3D G3DSA:3.40.50.970 475 706 7.8E-104 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 Gene3D G3DSA:3.40.50.970 61 469 6.5E-141 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 SUPERFAMILY SSF52518 61 469 1.24E-125 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS08960 8471f6f2b762fec9d4e1f7048695cdda 864 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 140 303 1.1E-5 T 26-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RGE_RS21965 1788d97c9f673ae83196784790536e8d 175 Pfam PF12915 Protein of unknown function (DUF3833) 13 174 5.3E-73 T 26-04-2016 IPR024409 Protein of unknown function DUF3833 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 23 74 6.0E-9 T 26-04-2016 IPR004176 Clp, N-terminal GO:0019538 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 111 133 0.48 T 26-04-2016 IPR004176 Clp, N-terminal GO:0019538 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 SUPERFAMILY SSF81923 13 128 8.93E-18 T 26-04-2016 IPR004176 Clp, N-terminal GO:0019538 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 225 336 2.9E-9 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 SMART SM01086 791 884 7.4E-7 T 26-04-2016 IPR019489 Clp ATPase, C-terminal RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 316 328 - T 26-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 621 639 9.3E-35 T 26-04-2016 IPR001270 ClpA/B family GO:0005524 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 695 713 9.3E-35 T 26-04-2016 IPR001270 ClpA/B family GO:0005524 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 666 684 9.3E-35 T 26-04-2016 IPR001270 ClpA/B family GO:0005524 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 728 742 9.3E-35 T 26-04-2016 IPR001270 ClpA/B family GO:0005524 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 Gene3D G3DSA:1.10.8.60 368 448 6.3E-26 T 26-04-2016 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 PANTHER PTHR11638:SF122 1 145 0.0 T 26-04-2016 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 PANTHER PTHR11638:SF122 172 880 0.0 T 26-04-2016 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 Gene3D G3DSA:1.10.8.60 803 868 6.0E-8 T 26-04-2016 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 SMART SM00382 617 777 5.6E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 SMART SM00382 220 365 3.8E-10 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 Gene3D G3DSA:1.10.1780.10 11 152 7.1E-20 T 26-04-2016 IPR004176 Clp, N-terminal GO:0019538 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 SUPERFAMILY SSF52540 181 507 1.14E-70 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 Pfam PF07724 AAA domain (Cdc48 subfamily) 616 785 3.7E-42 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 12 875 0.0 T 26-04-2016 IPR017729 Type VI secretion system, ATPase ClpV1 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 793 864 1.1E-10 T 26-04-2016 IPR019489 Clp ATPase, C-terminal RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 SUPERFAMILY SSF52540 566 864 3.36E-65 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 PANTHER PTHR11638 1 145 0.0 T 26-04-2016 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 PANTHER PTHR11638 172 880 0.0 T 26-04-2016 RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 Gene3D G3DSA:3.40.50.300 182 364 1.6E-43 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12500 503d82866ea39258eb1deaa632f7c004 887 Gene3D G3DSA:3.40.50.300 570 802 1.3E-49 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21350 425a6556023f2770b178419777f89cf6 89 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 47 1.6E-5 T 26-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RGE_RS21350 425a6556023f2770b178419777f89cf6 89 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 59 5.3E-9 T 26-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RGE_RS21350 425a6556023f2770b178419777f89cf6 89 SUPERFAMILY SSF143120 3 51 8.5E-9 T 26-04-2016 RGE_RS21350 425a6556023f2770b178419777f89cf6 89 Gene3D G3DSA:3.40.1620.10 3 46 9.5E-6 T 26-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RGE_RS03940 791d2a3f3df16f930c01a79743f59a25 142 PANTHER PTHR30093:SF9 3 142 1.6E-61 T 26-04-2016 RGE_RS03940 791d2a3f3df16f930c01a79743f59a25 142 Pfam PF08334 Type II secretion system (T2SS), protein G 34 141 1.4E-42 T 26-04-2016 IPR013545 Type II secretion system protein G RGE_RS03940 791d2a3f3df16f930c01a79743f59a25 142 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 6 30 1.0E-9 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS03940 791d2a3f3df16f930c01a79743f59a25 142 SUPERFAMILY SSF54523 37 141 3.61E-37 T 26-04-2016 RGE_RS03940 791d2a3f3df16f930c01a79743f59a25 142 PRINTS PR00813 Bacterial general secretion pathway protein G signature 47 65 2.8E-17 T 26-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RGE_RS03940 791d2a3f3df16f930c01a79743f59a25 142 PRINTS PR00813 Bacterial general secretion pathway protein G signature 11 36 2.8E-17 T 26-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RGE_RS03940 791d2a3f3df16f930c01a79743f59a25 142 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS03940 791d2a3f3df16f930c01a79743f59a25 142 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 10 142 1.6E-56 T 26-04-2016 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 RGE_RS03940 791d2a3f3df16f930c01a79743f59a25 142 Gene3D G3DSA:3.30.700.10 12 76 3.9E-10 T 26-04-2016 RGE_RS03940 791d2a3f3df16f930c01a79743f59a25 142 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 31 8.1E-10 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS03940 791d2a3f3df16f930c01a79743f59a25 142 PANTHER PTHR30093 3 142 1.6E-61 T 26-04-2016 RGE_RS08170 142631f7c649fb731ea0042c719ac013 144 PANTHER PTHR31964 1 144 8.1E-31 T 26-04-2016 RGE_RS08170 142631f7c649fb731ea0042c719ac013 144 PIRSF PIRSF006276 1 144 1.0E-17 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS08170 142631f7c649fb731ea0042c719ac013 144 SUPERFAMILY SSF52402 1 144 3.18E-37 T 26-04-2016 RGE_RS08170 142631f7c649fb731ea0042c719ac013 144 PANTHER PTHR31964:SF26 1 144 8.1E-31 T 26-04-2016 RGE_RS08170 142631f7c649fb731ea0042c719ac013 144 PRINTS PR01438 Universal stress protein signature 104 116 8.4E-21 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS08170 142631f7c649fb731ea0042c719ac013 144 PRINTS PR01438 Universal stress protein signature 2 20 8.4E-21 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS08170 142631f7c649fb731ea0042c719ac013 144 PRINTS PR01438 Universal stress protein signature 122 144 8.4E-21 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS08170 142631f7c649fb731ea0042c719ac013 144 Pfam PF00582 Universal stress protein family 1 144 1.5E-34 T 26-04-2016 IPR006016 UspA GO:0006950 RGE_RS08170 142631f7c649fb731ea0042c719ac013 144 Gene3D G3DSA:3.40.50.620 1 144 1.8E-38 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 614 45.509 T 26-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 PANTHER PTHR30081:SF1 1 178 1.8E-175 T 26-04-2016 RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 PANTHER PTHR30081:SF1 233 291 1.8E-175 T 26-04-2016 RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 PANTHER PTHR30081:SF1 324 633 1.8E-175 T 26-04-2016 RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 357 591 5.1E-74 T 26-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 Pfam PF13721 SecD export protein N-terminal TM region 1 107 4.0E-35 T 26-04-2016 IPR027398 SecD export protein N-terminal TM domain RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 PANTHER PTHR30081 1 178 1.8E-175 T 26-04-2016 RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 PANTHER PTHR30081 233 291 1.8E-175 T 26-04-2016 RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 PANTHER PTHR30081 324 633 1.8E-175 T 26-04-2016 RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 Gene3D G3DSA:1.20.1640.10 442 609 6.7E-24 T 26-04-2016 RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 Pfam PF07549 SecD/SecF GG Motif 125 146 5.0E-6 T 26-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 128 598 1.8E-141 T 26-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 Pfam PF02355 Protein export membrane protein 430 601 3.3E-24 T 26-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RGE_RS02220 7c88b8fe8593cf04554b2196a99f0c18 635 SUPERFAMILY SSF82866 408 606 5.1E-40 T 26-04-2016 RGE_RS13675 a88439ae2452ebd93c088fee0a149547 590 SUPERFAMILY SSF52467 206 380 3.82E-65 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS13675 a88439ae2452ebd93c088fee0a149547 590 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 23 584 4.8E-256 T 26-04-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS13675 a88439ae2452ebd93c088fee0a149547 590 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 213 349 8.9E-48 T 26-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RGE_RS13675 a88439ae2452ebd93c088fee0a149547 590 SUPERFAMILY SSF52518 21 202 1.26E-65 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS13675 a88439ae2452ebd93c088fee0a149547 590 PANTHER PTHR18968 3 588 0.0 T 26-04-2016 RGE_RS13675 a88439ae2452ebd93c088fee0a149547 590 Gene3D G3DSA:3.40.50.970 23 199 1.1E-74 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS13675 a88439ae2452ebd93c088fee0a149547 590 Gene3D G3DSA:3.40.50.970 375 577 4.2E-78 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS13675 a88439ae2452ebd93c088fee0a149547 590 Gene3D G3DSA:3.40.50.1220 207 374 5.2E-68 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS13675 a88439ae2452ebd93c088fee0a149547 590 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 24 187 1.4E-58 T 26-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RGE_RS13675 a88439ae2452ebd93c088fee0a149547 590 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 413 562 2.7E-51 T 26-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RGE_RS13675 a88439ae2452ebd93c088fee0a149547 590 SUPERFAMILY SSF52518 390 585 2.68E-69 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS13675 a88439ae2452ebd93c088fee0a149547 590 PANTHER PTHR18968:SF116 3 588 0.0 T 26-04-2016 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 99 108 - T 26-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 SUPERFAMILY SSF55957 365 457 2.09E-19 T 26-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 SUPERFAMILY SSF53738 5 138 7.85E-37 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 SUPERFAMILY SSF53738 153 254 2.04E-28 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 365 3.0E-20 T 26-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 PANTHER PTHR22573 7 463 8.6E-170 T 26-04-2016 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 139 1.5E-32 T 26-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 Gene3D G3DSA:3.40.120.10 171 248 9.2E-31 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 371 454 5.6E-12 T 26-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 Gene3D G3DSA:3.40.120.10 251 364 2.4E-41 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 232 247 5.4E-24 T 26-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 169 188 5.4E-24 T 26-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 203 216 5.4E-24 T 26-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 98 112 5.4E-24 T 26-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 SUPERFAMILY SSF53738 257 353 1.26E-30 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 Gene3D G3DSA:3.30.310.50 367 461 2.6E-25 T 26-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 PANTHER PTHR22573:SF28 7 463 8.6E-170 T 26-04-2016 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 Gene3D G3DSA:3.40.120.10 6 139 1.2E-31 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS17110 ab7161a85f6d68de647cfe9a47bd79b5 467 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 163 251 5.3E-24 T 26-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS00500 23e7ee9f319c045deaf09154c7d0428a 366 Gene3D G3DSA:3.20.20.70 1 360 6.8E-123 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS00500 23e7ee9f319c045deaf09154c7d0428a 366 SUPERFAMILY SSF51395 1 362 2.11E-114 T 26-04-2016 RGE_RS00500 23e7ee9f319c045deaf09154c7d0428a 366 PANTHER PTHR22893:SF14 1 364 1.7E-154 T 26-04-2016 RGE_RS00500 23e7ee9f319c045deaf09154c7d0428a 366 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 340 1.7E-83 T 26-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RGE_RS00500 23e7ee9f319c045deaf09154c7d0428a 366 PANTHER PTHR22893 1 364 1.7E-154 T 26-04-2016 RGE_RS14300 f0a9012043dd8e57f49801f0cb2bfd8f 686 Gene3D G3DSA:2.170.130.10 65 154 1.7E-14 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14300 f0a9012043dd8e57f49801f0cb2bfd8f 686 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 152 2.2E-11 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14300 f0a9012043dd8e57f49801f0cb2bfd8f 686 SUPERFAMILY SSF56935 35 686 3.4E-83 T 26-04-2016 RGE_RS14300 f0a9012043dd8e57f49801f0cb2bfd8f 686 Pfam PF00593 TonB dependent receptor 432 684 1.3E-27 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14300 f0a9012043dd8e57f49801f0cb2bfd8f 686 PANTHER PTHR32552:SF12 49 686 3.3E-202 T 26-04-2016 RGE_RS14300 f0a9012043dd8e57f49801f0cb2bfd8f 686 Gene3D G3DSA:2.40.170.20 155 685 5.0E-71 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14300 f0a9012043dd8e57f49801f0cb2bfd8f 686 PANTHER PTHR32552 49 686 3.3E-202 T 26-04-2016 RGE_RS14300 f0a9012043dd8e57f49801f0cb2bfd8f 686 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 55 685 1.8E-246 T 26-04-2016 IPR010100 TonB-dependent copper receptor RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 86 99 - T 26-04-2016 IPR020583 Inositol monophosphatase, metal-binding site RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 Gene3D G3DSA:3.40.190.80 156 264 7.8E-37 T 26-04-2016 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 PRINTS PR00377 Inositol monophosphatase superfamily signature 42 62 3.0E-62 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 PRINTS PR00377 Inositol monophosphatase superfamily signature 182 203 3.0E-62 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 PRINTS PR00377 Inositol monophosphatase superfamily signature 86 102 3.0E-62 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 PRINTS PR00377 Inositol monophosphatase superfamily signature 135 158 3.0E-62 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 PRINTS PR00377 Inositol monophosphatase superfamily signature 213 237 3.0E-62 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 PRINTS PR00377 Inositol monophosphatase superfamily signature 64 80 3.0E-62 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 PANTHER PTHR20854 1 284 7.7E-101 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 216 230 - T 26-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 SUPERFAMILY SSF56655 3 267 4.19E-88 T 26-04-2016 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 Gene3D G3DSA:3.30.540.10 5 155 2.0E-54 T 26-04-2016 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 PRINTS PR01959 SuhB family inositol monophosphatase signature 109 128 1.4E-29 T 26-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 PRINTS PR01959 SuhB family inositol monophosphatase signature 161 187 1.4E-29 T 26-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 PRINTS PR01959 SuhB family inositol monophosphatase signature 203 215 1.4E-29 T 26-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 PRINTS PR01959 SuhB family inositol monophosphatase signature 21 43 1.4E-29 T 26-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 Pfam PF00459 Inositol monophosphatase family 6 259 2.8E-66 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS07450 25352ee00b008d157c7589fd6b9ada72 322 PANTHER PTHR20854:SF4 1 284 7.7E-101 T 26-04-2016 RGE_RS10705 eb993e7afd17cb8a94dc65279bb2a654 150 PANTHER PTHR11527:SF118 40 150 5.7E-23 T 26-04-2016 RGE_RS10705 eb993e7afd17cb8a94dc65279bb2a654 150 Pfam PF00011 Hsp20/alpha crystallin family 46 150 2.2E-19 T 26-04-2016 IPR002068 Alpha crystallin/Hsp20 domain RGE_RS10705 eb993e7afd17cb8a94dc65279bb2a654 150 Gene3D G3DSA:2.60.40.790 5 150 3.1E-31 T 26-04-2016 IPR008978 HSP20-like chaperone RGE_RS10705 eb993e7afd17cb8a94dc65279bb2a654 150 PANTHER PTHR11527 40 150 5.7E-23 T 26-04-2016 IPR031107 Small heat shock protein HSP20 RGE_RS10705 eb993e7afd17cb8a94dc65279bb2a654 150 SUPERFAMILY SSF49764 23 149 1.08E-29 T 26-04-2016 IPR008978 HSP20-like chaperone RGE_RS18360 9b6858272acf7c4c9afb0883b04a4476 310 Gene3D G3DSA:2.40.290.10 42 172 5.2E-13 T 26-04-2016 IPR016194 SPOC-like, C-terminal domain RGE_RS18360 9b6858272acf7c4c9afb0883b04a4476 310 Pfam PF02735 Ku70/Ku80 beta-barrel domain 13 174 3.0E-34 T 26-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 RGE_RS18360 9b6858272acf7c4c9afb0883b04a4476 310 PANTHER PTHR41251 3 305 2.8E-60 T 26-04-2016 RGE_RS18360 9b6858272acf7c4c9afb0883b04a4476 310 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 3 256 30.11 T 26-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RGE_RS18360 9b6858272acf7c4c9afb0883b04a4476 310 PANTHER PTHR41251:SF1 3 305 2.8E-60 T 26-04-2016 RGE_RS18360 9b6858272acf7c4c9afb0883b04a4476 310 PIRSF PIRSF006493 1 300 3.2E-75 T 26-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RGE_RS18360 9b6858272acf7c4c9afb0883b04a4476 310 TIGRFAM TIGR02772 Ku_bact: Ku protein 10 256 4.7E-74 T 26-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RGE_RS18360 9b6858272acf7c4c9afb0883b04a4476 310 SMART SM00559 54 182 8.3E-36 T 26-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 RGE_RS18360 9b6858272acf7c4c9afb0883b04a4476 310 SUPERFAMILY SSF100939 5 259 9.02E-46 T 26-04-2016 IPR016194 SPOC-like, C-terminal domain RGE_RS21565 8d2d39c3138cb6169a40c0f0233cd9b0 293 PANTHER PTHR32322:SF9 1 289 4.0E-35 T 26-04-2016 RGE_RS21565 8d2d39c3138cb6169a40c0f0233cd9b0 293 SUPERFAMILY SSF103481 194 289 3.92E-10 T 26-04-2016 RGE_RS21565 8d2d39c3138cb6169a40c0f0233cd9b0 293 SUPERFAMILY SSF103481 44 143 5.36E-12 T 26-04-2016 RGE_RS21565 8d2d39c3138cb6169a40c0f0233cd9b0 293 Pfam PF00892 EamA-like transporter family 152 287 3.9E-12 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS21565 8d2d39c3138cb6169a40c0f0233cd9b0 293 Pfam PF00892 EamA-like transporter family 11 140 7.6E-20 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS21565 8d2d39c3138cb6169a40c0f0233cd9b0 293 PANTHER PTHR32322 1 289 4.0E-35 T 26-04-2016 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 PANTHER PTHR11482 11 424 1.1E-169 T 26-04-2016 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 Gene3D G3DSA:2.40.37.10 277 422 2.0E-44 T 26-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 12 420 2.3E-155 T 26-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 Gene3D G3DSA:3.20.20.10 48 276 2.6E-85 T 26-04-2016 IPR029066 PLP-binding barrel RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 PRINTS PR01181 Diaminopimelate decarboxylase signature 170 179 6.4E-30 T 26-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 PRINTS PR01181 Diaminopimelate decarboxylase signature 81 98 6.4E-30 T 26-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 PRINTS PR01181 Diaminopimelate decarboxylase signature 307 325 6.4E-30 T 26-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 PRINTS PR01181 Diaminopimelate decarboxylase signature 388 410 6.4E-30 T 26-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 SUPERFAMILY SSF51419 32 291 7.59E-82 T 26-04-2016 IPR029066 PLP-binding barrel RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 295 398 2.5E-15 T 26-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 57 289 2.5E-69 T 26-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 232 247 - T 26-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 PANTHER PTHR11482:SF5 11 424 1.1E-169 T 26-04-2016 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 63 81 5.8E-26 T 26-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 196 209 5.8E-26 T 26-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 83 95 5.8E-26 T 26-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 378 391 5.8E-26 T 26-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 279 298 5.8E-26 T 26-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 21 421 40.962 T 26-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS03990 978d83b6793a7c08d8e8ab044b6eda00 424 SUPERFAMILY SSF50621 264 422 1.47E-50 T 26-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RGE_RS02710 233e64636f21b4c62c4227bfa2071060 327 Hamap MF_00070 2-keto-3-deoxygluconate permease [kdgT]. 1 318 35.609 T 26-04-2016 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 RGE_RS02710 233e64636f21b4c62c4227bfa2071060 327 Pfam PF03812 2-keto-3-deoxygluconate permease 3 312 2.1E-112 T 26-04-2016 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 RGE_RS02710 233e64636f21b4c62c4227bfa2071060 327 ProDom PD024513 PERMEASE 2-KETO-3-DEOXYGLUCONATE MEMBRANE TRANSMEMBRANE SUGAR KDG SYMPORT INNER 2-KETO-3-DEOXY-D-GLUCONATE SYSTEM 14 318 1.0E-102 T 26-04-2016 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 RGE_RS02710 233e64636f21b4c62c4227bfa2071060 327 TIGRFAM TIGR00793 kdgT: 2-keto-3-deoxygluconate transporter 1 313 2.7E-148 T 26-04-2016 IPR018395 2-keto-3-deoxygluconate permease, subgroup GO:0008643|GO:0015649|GO:0016021|GO:0046411 RGE_RS15770 e06917cc4290edf15278482f496c8e58 414 SUPERFAMILY SSF103473 11 408 1.83E-57 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS15770 e06917cc4290edf15278482f496c8e58 414 PANTHER PTHR23505:SF8 2 378 1.1E-38 T 26-04-2016 RGE_RS15770 e06917cc4290edf15278482f496c8e58 414 Gene3D G3DSA:1.20.1250.20 22 192 1.0E-24 T 26-04-2016 RGE_RS15770 e06917cc4290edf15278482f496c8e58 414 Gene3D G3DSA:1.20.1250.20 225 402 3.2E-16 T 26-04-2016 RGE_RS15770 e06917cc4290edf15278482f496c8e58 414 PANTHER PTHR23505 2 378 1.1E-38 T 26-04-2016 RGE_RS15770 e06917cc4290edf15278482f496c8e58 414 Pfam PF07690 Major Facilitator Superfamily 27 237 7.0E-27 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS18550 70999632fc3042ede9f084804f8526b0 300 Pfam PF03466 LysR substrate binding domain 87 293 1.6E-42 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS18550 70999632fc3042ede9f084804f8526b0 300 PANTHER PTHR30537:SF11 6 295 1.0E-128 T 26-04-2016 RGE_RS18550 70999632fc3042ede9f084804f8526b0 300 PANTHER PTHR30537 6 295 1.0E-128 T 26-04-2016 RGE_RS18550 70999632fc3042ede9f084804f8526b0 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.3E-19 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS18550 70999632fc3042ede9f084804f8526b0 300 SUPERFAMILY SSF53850 89 297 1.36E-46 T 26-04-2016 RGE_RS18550 70999632fc3042ede9f084804f8526b0 300 Gene3D G3DSA:1.10.10.10 1 80 2.8E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18550 70999632fc3042ede9f084804f8526b0 300 Gene3D G3DSA:3.40.190.10 184 258 8.2E-5 T 26-04-2016 RGE_RS18550 70999632fc3042ede9f084804f8526b0 300 Gene3D G3DSA:3.40.190.10 91 183 7.4E-27 T 26-04-2016 RGE_RS18550 70999632fc3042ede9f084804f8526b0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.5E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS18550 70999632fc3042ede9f084804f8526b0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.5E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS18550 70999632fc3042ede9f084804f8526b0 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.5E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS18550 70999632fc3042ede9f084804f8526b0 300 SUPERFAMILY SSF46785 1 85 2.29E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS21455 308c1248066dd8b49289f3542feb8bb4 318 SMART SM00849 25 211 3.4E-23 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS21455 308c1248066dd8b49289f3542feb8bb4 318 PANTHER PTHR11935 39 171 2.7E-18 T 26-04-2016 RGE_RS21455 308c1248066dd8b49289f3542feb8bb4 318 PANTHER PTHR11935 273 298 2.7E-18 T 26-04-2016 RGE_RS21455 308c1248066dd8b49289f3542feb8bb4 318 SUPERFAMILY SSF56281 26 241 4.72E-41 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS21455 308c1248066dd8b49289f3542feb8bb4 318 Gene3D G3DSA:3.60.15.10 17 237 2.2E-39 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS21455 308c1248066dd8b49289f3542feb8bb4 318 Pfam PF00753 Metallo-beta-lactamase superfamily 21 211 1.4E-23 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS09540 34bf6fd196c930e75c546a7cfadc7d55 90 PIRSF PIRSF004669 2 90 2.4E-25 T 26-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RGE_RS09540 34bf6fd196c930e75c546a7cfadc7d55 90 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 2 88 2.5E-26 T 26-04-2016 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 RGE_RS09540 34bf6fd196c930e75c546a7cfadc7d55 90 Pfam PF01313 Bacterial export proteins, family 3 8 78 4.8E-25 T 26-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RGE_RS09540 34bf6fd196c930e75c546a7cfadc7d55 90 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 19 40 8.9E-15 T 26-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RGE_RS09540 34bf6fd196c930e75c546a7cfadc7d55 90 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 55 77 8.9E-15 T 26-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RGE_RS09540 34bf6fd196c930e75c546a7cfadc7d55 90 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 40 55 8.9E-15 T 26-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RGE_RS09540 34bf6fd196c930e75c546a7cfadc7d55 90 PANTHER PTHR34040 2 90 1.6E-32 T 26-04-2016 RGE_RS09540 34bf6fd196c930e75c546a7cfadc7d55 90 PANTHER PTHR34040:SF2 2 90 1.6E-32 T 26-04-2016 RGE_RS20770 d8e908605e0694767cc2723640e24693 336 Pfam PF13469 Sulfotransferase family 3 212 1.3E-30 T 26-04-2016 RGE_RS20770 d8e908605e0694767cc2723640e24693 336 Gene3D G3DSA:3.40.50.300 110 278 1.4E-21 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20770 d8e908605e0694767cc2723640e24693 336 Gene3D G3DSA:3.40.50.300 2 54 1.4E-21 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20770 d8e908605e0694767cc2723640e24693 336 SUPERFAMILY SSF52540 2 48 4.93E-32 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20770 d8e908605e0694767cc2723640e24693 336 SUPERFAMILY SSF52540 97 276 4.93E-32 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15960 bae32195a03fd030e95a8f978656f811 208 SUPERFAMILY SSF53271 3 206 9.83E-64 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS15960 bae32195a03fd030e95a8f978656f811 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 4 208 8.8E-82 T 26-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 RGE_RS15960 bae32195a03fd030e95a8f978656f811 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 3.3E-62 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS15960 bae32195a03fd030e95a8f978656f811 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 41.976 T 26-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 RGE_RS15960 bae32195a03fd030e95a8f978656f811 208 PANTHER PTHR10285 8 197 3.1E-84 T 26-04-2016 RGE_RS15960 bae32195a03fd030e95a8f978656f811 208 Gene3D G3DSA:3.40.50.2020 3 208 1.5E-70 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS00150 6f1b8aee77ccde9d409cb57f66be1ba9 186 Pfam PF06041 Bacterial protein of unknown function (DUF924) 9 183 1.4E-58 T 26-04-2016 IPR010323 Protein of unknown function DUF924 RGE_RS00150 6f1b8aee77ccde9d409cb57f66be1ba9 186 PANTHER PTHR23004:SF7 17 186 7.8E-66 T 26-04-2016 RGE_RS00150 6f1b8aee77ccde9d409cb57f66be1ba9 186 Gene3D G3DSA:1.20.58.320 3 80 9.0E-21 T 26-04-2016 RGE_RS00150 6f1b8aee77ccde9d409cb57f66be1ba9 186 SUPERFAMILY SSF48452 3 182 7.21E-58 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00150 6f1b8aee77ccde9d409cb57f66be1ba9 186 Gene3D G3DSA:1.25.40.10 82 186 1.5E-36 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00150 6f1b8aee77ccde9d409cb57f66be1ba9 186 PANTHER PTHR23004 17 186 7.8E-66 T 26-04-2016 RGE_RS13430 77c76c515fc7443bb596d4ab0cd34022 669 SUPERFAMILY SSF55120 303 472 1.56E-39 T 26-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS13430 77c76c515fc7443bb596d4ab0cd34022 669 Pfam PF01479 S4 domain 243 286 3.0E-8 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS13430 77c76c515fc7443bb596d4ab0cd34022 669 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 342 356 - T 26-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RGE_RS13430 77c76c515fc7443bb596d4ab0cd34022 669 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 308 468 9.1E-47 T 26-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RGE_RS13430 77c76c515fc7443bb596d4ab0cd34022 669 PANTHER PTHR21600:SF2 242 547 8.3E-81 T 26-04-2016 RGE_RS13430 77c76c515fc7443bb596d4ab0cd34022 669 PANTHER PTHR21600 242 547 8.3E-81 T 26-04-2016 RGE_RS13430 77c76c515fc7443bb596d4ab0cd34022 669 SUPERFAMILY SSF55174 243 335 2.65E-16 T 26-04-2016 RGE_RS13430 77c76c515fc7443bb596d4ab0cd34022 669 Gene3D G3DSA:3.10.290.10 243 296 1.7E-15 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS13430 77c76c515fc7443bb596d4ab0cd34022 669 Pfam PF00849 RNA pseudouridylate synthase 304 436 3.2E-15 T 26-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS13430 77c76c515fc7443bb596d4ab0cd34022 669 SMART SM00363 241 303 1.9E-8 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS21075 9a0573376647ba856d353a62e943739c 323 SUPERFAMILY SSF56524 70 319 7.72E-92 T 26-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RGE_RS21075 9a0573376647ba856d353a62e943739c 323 Pfam PF00174 Oxidoreductase molybdopterin binding domain 104 258 3.1E-28 T 26-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RGE_RS21075 9a0573376647ba856d353a62e943739c 323 PANTHER PTHR19372 15 318 1.6E-134 T 26-04-2016 RGE_RS21075 9a0573376647ba856d353a62e943739c 323 Hamap MF_01206 Sulfoxide reductase catalytic subunit YedY [yedY]. 4 323 58.631 T 26-04-2016 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 RGE_RS21075 9a0573376647ba856d353a62e943739c 323 Gene3D G3DSA:3.90.420.10 74 322 6.7E-71 T 26-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RGE_RS21075 9a0573376647ba856d353a62e943739c 323 PANTHER PTHR19372:SF1 15 318 1.6E-134 T 26-04-2016 RGE_RS16730 150264344cfa8d9b9d8fa78f96a2fb65 299 PANTHER PTHR11732 2 298 3.3E-114 T 26-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RGE_RS16730 150264344cfa8d9b9d8fa78f96a2fb65 299 SUPERFAMILY SSF51430 13 297 2.88E-73 T 26-04-2016 IPR023210 NADP-dependent oxidoreductase domain RGE_RS16730 150264344cfa8d9b9d8fa78f96a2fb65 299 PANTHER PTHR11732:SF10 2 298 3.3E-114 T 26-04-2016 RGE_RS16730 150264344cfa8d9b9d8fa78f96a2fb65 299 Gene3D G3DSA:3.20.20.100 14 294 5.4E-64 T 26-04-2016 IPR023210 NADP-dependent oxidoreductase domain RGE_RS16730 150264344cfa8d9b9d8fa78f96a2fb65 299 Pfam PF00248 Aldo/keto reductase family 16 288 1.2E-56 T 26-04-2016 IPR023210 NADP-dependent oxidoreductase domain RGE_RS05415 d209248f5e387a9ed3f78d75deadddfb 128 Pfam PF05656 Protein of unknown function (DUF805) 23 126 5.7E-19 T 26-04-2016 IPR008523 Protein of unknown function DUF805 GO:0016021 RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 Gene3D G3DSA:3.30.230.10 5 171 9.7E-26 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 410 501 3.1E-25 T 26-04-2016 IPR025158 Mg chelatase-related protein, C-terminal domain RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 Pfam PF01078 Magnesium chelatase, subunit ChlI 195 403 1.9E-88 T 26-04-2016 IPR000523 Magnesium chelatase ChlI domain RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 PANTHER PTHR32039 1 502 3.6E-212 T 26-04-2016 RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 SUPERFAMILY SSF54211 4 170 4.93E-28 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 SUPERFAMILY SSF52540 194 502 1.6E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 143 2.6E-41 T 26-04-2016 RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 SMART SM00382 215 400 4.3E-6 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 7 500 1.2E-162 T 26-04-2016 IPR004482 Mg chelatase-related protein RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 Gene3D G3DSA:3.40.50.300 194 397 1.7E-48 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 322 335 4.4E-5 T 26-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 214 229 4.4E-5 T 26-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 294 308 4.4E-5 T 26-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 RGE_RS01235 3e8b802675dcf617ebce75eaa4ba4090 509 PANTHER PTHR32039:SF7 1 502 3.6E-212 T 26-04-2016 IPR004482 Mg chelatase-related protein RGE_RS00055 417ddaaf2d9d9b70200eee842a15d4ca 447 PANTHER PTHR37419 1 430 2.7E-110 T 26-04-2016 RGE_RS00055 417ddaaf2d9d9b70200eee842a15d4ca 447 Pfam PF07804 HipA-like C-terminal domain 257 411 3.5E-27 T 26-04-2016 IPR012893 HipA-like, C-terminal RGE_RS00055 417ddaaf2d9d9b70200eee842a15d4ca 447 Pfam PF13657 HipA N-terminal domain 10 111 2.7E-22 T 26-04-2016 IPR017508 HipA, N-terminal subdomain 1 RGE_RS00055 417ddaaf2d9d9b70200eee842a15d4ca 447 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 10 111 8.2E-25 T 26-04-2016 IPR017508 HipA, N-terminal subdomain 1 RGE_RS00055 417ddaaf2d9d9b70200eee842a15d4ca 447 Pfam PF07805 HipA-like N-terminal domain 160 246 1.3E-18 T 26-04-2016 IPR012894 HipA, N-terminal subdomain 2 RGE_RS00055 417ddaaf2d9d9b70200eee842a15d4ca 447 PANTHER PTHR37419:SF3 1 430 2.7E-110 T 26-04-2016 RGE_RS06785 2ae88b36379d659f2ce7ffeb6ad7a184 589 Pfam PF00005 ABC transporter 356 506 4.0E-33 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS06785 2ae88b36379d659f2ce7ffeb6ad7a184 589 Pfam PF00664 ABC transporter transmembrane region 25 294 8.3E-50 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS06785 2ae88b36379d659f2ce7ffeb6ad7a184 589 SMART SM00382 365 552 2.9E-17 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS06785 2ae88b36379d659f2ce7ffeb6ad7a184 589 Gene3D G3DSA:3.40.50.300 338 570 2.9E-84 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06785 2ae88b36379d659f2ce7ffeb6ad7a184 589 SUPERFAMILY SSF90123 11 324 3.92E-76 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS06785 2ae88b36379d659f2ce7ffeb6ad7a184 589 Gene3D G3DSA:1.20.1560.10 11 326 2.3E-75 T 26-04-2016 RGE_RS06785 2ae88b36379d659f2ce7ffeb6ad7a184 589 PANTHER PTHR24221 6 585 1.1E-237 T 26-04-2016 RGE_RS06785 2ae88b36379d659f2ce7ffeb6ad7a184 589 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 10 579 2.1E-232 T 26-04-2016 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 RGE_RS06785 2ae88b36379d659f2ce7ffeb6ad7a184 589 SUPERFAMILY SSF52540 329 577 5.22E-93 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06785 2ae88b36379d659f2ce7ffeb6ad7a184 589 ProSitePatterns PS00211 ABC transporters family signature. 478 492 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS03050 869659a174e156d74be5f359bf6a88eb 142 Gene3D G3DSA:1.20.120.10 103 141 2.6E-5 T 26-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RGE_RS03050 869659a174e156d74be5f359bf6a88eb 142 Pfam PF01322 Cytochrome C' 102 140 1.5E-4 T 26-04-2016 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 RGE_RS03050 869659a174e156d74be5f359bf6a88eb 142 SUPERFAMILY SSF47175 30 142 1.47E-10 T 26-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RGE_RS11955 4c37c2461f9450b4273f65fc1f4f7c51 67 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.8E-15 T 26-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RGE_RS11955 4c37c2461f9450b4273f65fc1f4f7c51 67 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.8E-15 T 26-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RGE_RS11955 4c37c2461f9450b4273f65fc1f4f7c51 67 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.8E-15 T 26-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RGE_RS11955 4c37c2461f9450b4273f65fc1f4f7c51 67 PANTHER PTHR33343 1 63 5.5E-21 T 26-04-2016 RGE_RS11955 4c37c2461f9450b4273f65fc1f4f7c51 67 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 17.578 T 26-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RGE_RS11955 4c37c2461f9450b4273f65fc1f4f7c51 67 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 26-04-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS11955 4c37c2461f9450b4273f65fc1f4f7c51 67 SUPERFAMILY SSF143034 2 64 5.1E-22 T 26-04-2016 RGE_RS11955 4c37c2461f9450b4273f65fc1f4f7c51 67 Pfam PF01632 Ribosomal protein L35 2 62 3.1E-23 T 26-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS11955 4c37c2461f9450b4273f65fc1f4f7c51 67 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 63 2.7E-24 T 26-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RGE_RS09595 3488b365d996d14c178e0d8d0fe5d267 128 SUPERFAMILY SSF101116 8 124 3.27E-32 T 26-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RGE_RS09595 3488b365d996d14c178e0d8d0fe5d267 128 PIRSF PIRSF039090 2 127 1.2E-36 T 26-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RGE_RS09595 3488b365d996d14c178e0d8d0fe5d267 128 TIGRFAM TIGR00208 fliS: flagellar protein FliS 2 121 2.4E-18 T 26-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RGE_RS09595 3488b365d996d14c178e0d8d0fe5d267 128 Pfam PF02561 Flagellar protein FliS 8 122 4.3E-32 T 26-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RGE_RS09595 3488b365d996d14c178e0d8d0fe5d267 128 PANTHER PTHR34773 1 128 1.4E-28 T 26-04-2016 RGE_RS09595 3488b365d996d14c178e0d8d0fe5d267 128 Gene3D G3DSA:1.20.120.340 7 125 4.3E-34 T 26-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RGE_RS03725 18fe38c3a30e59dc0348e5abf21e4bff 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 26-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 RGE_RS03725 18fe38c3a30e59dc0348e5abf21e4bff 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 1.5E-45 T 26-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RGE_RS03725 18fe38c3a30e59dc0348e5abf21e4bff 130 PANTHER PTHR21569 7 130 8.9E-64 T 26-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RGE_RS03725 18fe38c3a30e59dc0348e5abf21e4bff 130 SUPERFAMILY SSF54211 5 130 2.43E-44 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS03725 18fe38c3a30e59dc0348e5abf21e4bff 130 Gene3D G3DSA:3.30.230.10 6 130 2.1E-49 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS03725 18fe38c3a30e59dc0348e5abf21e4bff 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 30.435 T 26-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid RGE_RS22735 19baf359fe82c96700230b3632a09536 348 ProSitePatterns PS00321 recA signature. 220 228 - T 26-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 RGE_RS22735 19baf359fe82c96700230b3632a09536 348 PANTHER PTHR22942 11 342 1.2E-206 T 26-04-2016 RGE_RS22735 19baf359fe82c96700230b3632a09536 348 SUPERFAMILY SSF54752 275 333 9.81E-23 T 26-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal RGE_RS22735 19baf359fe82c96700230b3632a09536 348 PRINTS PR00142 RecA protein signature 134 163 9.8E-86 T 26-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RGE_RS22735 19baf359fe82c96700230b3632a09536 348 PRINTS PR00142 RecA protein signature 217 245 9.8E-86 T 26-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RGE_RS22735 19baf359fe82c96700230b3632a09536 348 PRINTS PR00142 RecA protein signature 100 129 9.8E-86 T 26-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RGE_RS22735 19baf359fe82c96700230b3632a09536 348 PRINTS PR00142 RecA protein signature 250 279 9.8E-86 T 26-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RGE_RS22735 19baf359fe82c96700230b3632a09536 348 PRINTS PR00142 RecA protein signature 172 201 9.8E-86 T 26-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RGE_RS22735 19baf359fe82c96700230b3632a09536 348 PRINTS PR00142 RecA protein signature 304 321 9.8E-86 T 26-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RGE_RS22735 19baf359fe82c96700230b3632a09536 348 Gene3D G3DSA:3.40.50.300 42 274 6.6E-84 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22735 19baf359fe82c96700230b3632a09536 348 SMART SM00382 64 235 1.7E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS22735 19baf359fe82c96700230b3632a09536 348 Pfam PF00154 recA bacterial DNA recombination protein 13 275 1.8E-145 T 26-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RGE_RS22735 19baf359fe82c96700230b3632a09536 348 Hamap MF_00268 Protein RecA [recA]. 11 336 52.37 T 26-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RGE_RS22735 19baf359fe82c96700230b3632a09536 348 Gene3D G3DSA:3.30.250.10 275 333 2.6E-31 T 26-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal RGE_RS22735 19baf359fe82c96700230b3632a09536 348 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 10 331 6.6E-173 T 26-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RGE_RS22735 19baf359fe82c96700230b3632a09536 348 PANTHER PTHR22942:SF1 11 342 1.2E-206 T 26-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RGE_RS22735 19baf359fe82c96700230b3632a09536 348 SUPERFAMILY SSF52540 10 274 3.24E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09870 8704a000732d811fa4fce143af0972fc 110 SUPERFAMILY SSF46626 18 106 6.14E-12 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS09870 8704a000732d811fa4fce143af0972fc 110 Gene3D G3DSA:1.10.760.10 19 106 3.4E-13 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 512 7.4E-56 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 SUPERFAMILY SSF58104 233 514 3.66E-71 T 26-04-2016 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 1.9E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 1.9E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 1.9E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 1.9E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 PANTHER PTHR32089 136 516 2.8E-139 T 26-04-2016 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 PANTHER PTHR32089:SF63 136 516 2.8E-139 T 26-04-2016 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 Pfam PF00672 HAMP domain 194 262 7.7E-18 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 SMART SM00304 213 265 2.2E-13 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 Gene3D G3DSA:1.10.287.950 281 485 1.4E-56 T 26-04-2016 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 SMART SM00283 266 513 2.4E-76 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS11205 7e1e5b281982059b59bcbef7cb9e0108 518 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 171 4.7E-17 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS17270 cf1ef0d9ccf1e125bdf12336bd5102a5 279 Gene3D G3DSA:3.40.50.300 25 272 3.7E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17270 cf1ef0d9ccf1e125bdf12336bd5102a5 279 SUPERFAMILY SSF52540 26 274 1.52E-52 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17270 cf1ef0d9ccf1e125bdf12336bd5102a5 279 PIRSF PIRSF003092 14 278 5.4E-71 T 26-04-2016 IPR025501 ATP binding protein MinD RGE_RS17270 cf1ef0d9ccf1e125bdf12336bd5102a5 279 PANTHER PTHR13696:SF3 24 272 2.1E-67 T 26-04-2016 RGE_RS17270 cf1ef0d9ccf1e125bdf12336bd5102a5 279 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 29 210 2.5E-27 T 26-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RGE_RS17270 cf1ef0d9ccf1e125bdf12336bd5102a5 279 PANTHER PTHR13696 24 272 2.1E-67 T 26-04-2016 RGE_RS14820 81899859e7a1466bfa872f6db680f724 321 PANTHER PTHR30273 7 320 6.8E-88 T 26-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RGE_RS14820 81899859e7a1466bfa872f6db680f724 321 PIRSF PIRSF018266 3 318 7.1E-91 T 26-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RGE_RS14820 81899859e7a1466bfa872f6db680f724 321 Pfam PF04773 FecR protein 115 206 5.8E-20 T 26-04-2016 IPR006860 FecR protein RGE_RS14820 81899859e7a1466bfa872f6db680f724 321 Pfam PF16220 Domain of unknown function (DUF4880) 14 56 3.0E-13 T 26-04-2016 IPR032623 FecR, N-terminal RGE_RS14820 81899859e7a1466bfa872f6db680f724 321 PANTHER PTHR30273:SF3 7 320 6.8E-88 T 26-04-2016 RGE_RS12715 40975bf2f0844cc75b600a139ddff3b1 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 15 373 4.3E-101 T 26-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 RGE_RS12715 40975bf2f0844cc75b600a139ddff3b1 382 Gene3D G3DSA:3.40.50.1970 7 183 5.8E-48 T 26-04-2016 RGE_RS12715 40975bf2f0844cc75b600a139ddff3b1 382 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 26-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RGE_RS12715 40975bf2f0844cc75b600a139ddff3b1 382 SUPERFAMILY SSF56796 5 380 8.11E-105 T 26-04-2016 RGE_RS12715 40975bf2f0844cc75b600a139ddff3b1 382 Gene3D G3DSA:1.20.1090.10 184 382 1.1E-55 T 26-04-2016 RGE_RS12715 40975bf2f0844cc75b600a139ddff3b1 382 PANTHER PTHR11496 4 382 4.3E-92 T 26-04-2016 RGE_RS12250 e251ef870632edb3e497163d27c97a4e 192 Gene3D G3DSA:1.20.120.520 12 152 2.7E-11 T 26-04-2016 RGE_RS12250 e251ef870632edb3e497163d27c97a4e 192 Pfam PF01814 Hemerythrin HHE cation binding domain 16 133 4.7E-13 T 26-04-2016 IPR012312 Haemerythrin-like RGE_RS12250 e251ef870632edb3e497163d27c97a4e 192 PANTHER PTHR35585 19 162 2.9E-16 T 26-04-2016 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 Pfam PF00108 Thiolase, N-terminal domain 5 262 5.1E-82 T 26-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 Pfam PF02803 Thiolase, C-terminal domain 270 390 1.4E-41 T 26-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 PANTHER PTHR18919:SF110 1 392 1.5E-198 T 26-04-2016 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 PIRSF PIRSF000429 1 392 4.8E-107 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 SUPERFAMILY SSF53901 270 391 7.97E-40 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 Gene3D G3DSA:3.40.47.10 276 391 3.2E-56 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 Gene3D G3DSA:3.40.47.10 142 194 3.2E-56 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 26-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 ProSitePatterns PS00099 Thiolases active site. 373 386 - T 26-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 Gene3D G3DSA:3.40.47.10 195 275 2.8E-63 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 Gene3D G3DSA:3.40.47.10 4 124 2.8E-63 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 SUPERFAMILY SSF53901 5 269 1.98E-68 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 PANTHER PTHR18919 1 392 1.5E-198 T 26-04-2016 RGE_RS21220 ad5539a6f3cd811d43f55ab1855c3170 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 390 4.7E-119 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 445 474 4.2E-54 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 368 395 4.2E-54 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 18 43 4.2E-54 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 291 320 4.2E-54 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 397 426 4.2E-54 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 Gene3D G3DSA:1.10.287.950 285 489 6.3E-60 T 26-04-2016 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 PANTHER PTHR32089 177 520 1.2E-153 T 26-04-2016 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 PANTHER PTHR32089:SF63 177 520 1.2E-153 T 26-04-2016 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 190 2.6E-17 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 Pfam PF00672 HAMP domain 198 264 9.4E-15 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 326 516 2.5E-60 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 SMART SM00283 270 517 8.1E-97 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 SUPERFAMILY SSF58104 237 519 5.49E-74 T 26-04-2016 RGE_RS08670 318b09d6a7190ed2aa67e0bc34342bca 581 SMART SM00304 217 269 2.5E-13 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS16425 8a48b7ec670bff9547c9a6187387be99 317 Gene3D G3DSA:3.90.180.10 2 183 1.3E-20 T 26-04-2016 IPR011032 GroES-like RGE_RS16425 8a48b7ec670bff9547c9a6187387be99 317 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 93 3.2E-5 T 26-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RGE_RS16425 8a48b7ec670bff9547c9a6187387be99 317 SUPERFAMILY SSF50129 3 155 2.83E-25 T 26-04-2016 IPR011032 GroES-like RGE_RS16425 8a48b7ec670bff9547c9a6187387be99 317 TIGRFAM TIGR01202 bchC: chlorophyll synthesis pathway protein BchC 2 312 4.1E-163 T 26-04-2016 IPR005903 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase GO:0016491|GO:0030494|GO:0036354|GO:0055114 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00671 RGE_RS16425 8a48b7ec670bff9547c9a6187387be99 317 SUPERFAMILY SSF51735 124 278 5.07E-11 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS16425 8a48b7ec670bff9547c9a6187387be99 317 PANTHER PTHR11695 14 312 1.4E-23 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS16425 8a48b7ec670bff9547c9a6187387be99 317 PANTHER PTHR11695:SF38 14 312 1.4E-23 T 26-04-2016 RGE_RS16425 8a48b7ec670bff9547c9a6187387be99 317 Gene3D G3DSA:3.40.50.720 199 256 3.5E-7 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS16620 5ddd93e6ead54390a84e8b18eae60c13 447 SUPERFAMILY SSF52540 25 228 7.13E-40 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16620 5ddd93e6ead54390a84e8b18eae60c13 447 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 65 175 1.7E-14 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS16620 5ddd93e6ead54390a84e8b18eae60c13 447 Pfam PF16193 AAA C-terminal domain 198 269 1.4E-19 T 26-04-2016 IPR032423 AAA ATPase, C-terminal domain RGE_RS16620 5ddd93e6ead54390a84e8b18eae60c13 447 Pfam PF12002 MgsA AAA+ ATPase C terminal 270 436 1.1E-66 T 26-04-2016 IPR021886 MgsA AAA+ ATPase C-terminal RGE_RS16620 5ddd93e6ead54390a84e8b18eae60c13 447 PANTHER PTHR13779:SF7 25 442 6.4E-182 T 26-04-2016 RGE_RS16620 5ddd93e6ead54390a84e8b18eae60c13 447 SMART SM00382 61 177 5.0E-15 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS16620 5ddd93e6ead54390a84e8b18eae60c13 447 Gene3D G3DSA:1.10.3710.10 350 443 6.2E-34 T 26-04-2016 RGE_RS16620 5ddd93e6ead54390a84e8b18eae60c13 447 SUPERFAMILY SSF48019 254 436 2.21E-73 T 26-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RGE_RS16620 5ddd93e6ead54390a84e8b18eae60c13 447 PANTHER PTHR13779 25 442 6.4E-182 T 26-04-2016 RGE_RS16620 5ddd93e6ead54390a84e8b18eae60c13 447 Gene3D G3DSA:1.20.272.10 251 349 6.0E-43 T 26-04-2016 RGE_RS16620 5ddd93e6ead54390a84e8b18eae60c13 447 Gene3D G3DSA:3.40.50.300 25 165 2.9E-30 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16620 5ddd93e6ead54390a84e8b18eae60c13 447 Gene3D G3DSA:1.10.8.60 166 235 2.0E-5 T 26-04-2016 RGE_RS01565 fef59e7caec7c22dd633b96659067639 125 Gene3D G3DSA:1.20.5.710 2 51 1.9E-21 T 26-04-2016 RGE_RS01565 fef59e7caec7c22dd633b96659067639 125 SUPERFAMILY SSF48300 4 61 3.53E-15 T 26-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01565 fef59e7caec7c22dd633b96659067639 125 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 59 125 5.2E-28 T 26-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 RGE_RS01565 fef59e7caec7c22dd633b96659067639 125 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 125 24.109 T 26-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01565 fef59e7caec7c22dd633b96659067639 125 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 51 9.8E-17 T 26-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01565 fef59e7caec7c22dd633b96659067639 125 Gene3D G3DSA:3.30.1390.10 54 125 2.1E-31 T 26-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RGE_RS01565 fef59e7caec7c22dd633b96659067639 125 SUPERFAMILY SSF54736 54 125 6.45E-23 T 26-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RGE_RS01565 fef59e7caec7c22dd633b96659067639 125 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 125 2.1E-45 T 26-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01565 fef59e7caec7c22dd633b96659067639 125 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 61 125 2.0E-23 T 26-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 RGE_RS22035 fce7497d3103f8f6d7960c414c52d0cc 156 SUPERFAMILY SSF55804 1 149 3.92E-41 T 26-04-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 RGE_RS22035 fce7497d3103f8f6d7960c414c52d0cc 156 PANTHER PTHR30505 1 156 7.1E-41 T 26-04-2016 RGE_RS22035 fce7497d3103f8f6d7960c414c52d0cc 156 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 8 148 7.7E-34 T 26-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RGE_RS22035 fce7497d3103f8f6d7960c414c52d0cc 156 Gene3D G3DSA:3.40.930.10 1 150 2.8E-42 T 26-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RGE_RS22035 fce7497d3103f8f6d7960c414c52d0cc 156 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 26-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RGE_RS22035 fce7497d3103f8f6d7960c414c52d0cc 156 PANTHER PTHR30505:SF6 1 156 7.1E-41 T 26-04-2016 RGE_RS09370 047298786d15551c94a68bd36f5b35c4 640 Gene3D G3DSA:2.60.40.420 529 638 1.2E-48 T 26-04-2016 IPR008972 Cupredoxin RGE_RS09370 047298786d15551c94a68bd36f5b35c4 640 SUPERFAMILY SSF49503 507 639 4.95E-30 T 26-04-2016 IPR008972 Cupredoxin RGE_RS09370 047298786d15551c94a68bd36f5b35c4 640 Gene3D G3DSA:2.130.10.10 108 528 2.6E-153 T 26-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RGE_RS09370 047298786d15551c94a68bd36f5b35c4 640 TIGRFAM TIGR04244 nitrous_NosZ_RR: nitrous-oxide reductase, TAT-dependent 15 639 8.5E-298 T 26-04-2016 IPR023644 Nitrous-oxide reductase GO:0005507|GO:0005509|GO:0050304|GO:0055114 KEGG: 00910+1.7.2.4|MetaCyc: PWY-6748|MetaCyc: PWY-7084|UniPathway: UPA00652 RGE_RS09370 047298786d15551c94a68bd36f5b35c4 640 SUPERFAMILY SSF50974 63 518 1.57E-114 T 26-04-2016 IPR011045 Nitrous oxide reductase, N-terminal RGE_RS09370 047298786d15551c94a68bd36f5b35c4 640 PANTHER PTHR22888 558 639 2.6E-33 T 26-04-2016 RGE_RS09370 047298786d15551c94a68bd36f5b35c4 640 Pfam PF13473 Cupredoxin-like domain 546 622 1.5E-7 T 26-04-2016 IPR028096 EfeO-type cupredoxin-like domain RGE_RS09370 047298786d15551c94a68bd36f5b35c4 640 PANTHER PTHR22888:SF3 558 639 2.6E-33 T 26-04-2016 RGE_RS19310 999142bcad16b2de86d1329519b743d8 547 PANTHER PTHR23501 5 423 3.5E-155 T 26-04-2016 RGE_RS19310 999142bcad16b2de86d1329519b743d8 547 PRINTS PR01035 Tetracycline resistance protein signature 27 43 1.8E-7 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS19310 999142bcad16b2de86d1329519b743d8 547 PRINTS PR01035 Tetracycline resistance protein signature 141 163 1.8E-7 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS19310 999142bcad16b2de86d1329519b743d8 547 PRINTS PR01035 Tetracycline resistance protein signature 169 189 1.8E-7 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS19310 999142bcad16b2de86d1329519b743d8 547 Pfam PF07690 Major Facilitator Superfamily 22 348 1.2E-27 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS19310 999142bcad16b2de86d1329519b743d8 547 SUPERFAMILY SSF103473 15 387 2.22E-52 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS19310 999142bcad16b2de86d1329519b743d8 547 Pfam PF00582 Universal stress protein family 400 521 2.5E-8 T 26-04-2016 IPR006016 UspA GO:0006950 RGE_RS19310 999142bcad16b2de86d1329519b743d8 547 PANTHER PTHR23501:SF72 5 423 3.5E-155 T 26-04-2016 RGE_RS19310 999142bcad16b2de86d1329519b743d8 547 SUPERFAMILY SSF52402 399 521 7.03E-11 T 26-04-2016 RGE_RS19310 999142bcad16b2de86d1329519b743d8 547 Gene3D G3DSA:1.20.1250.20 209 387 8.7E-12 T 26-04-2016 RGE_RS19310 999142bcad16b2de86d1329519b743d8 547 Gene3D G3DSA:1.20.1250.20 16 197 1.2E-23 T 26-04-2016 RGE_RS19310 999142bcad16b2de86d1329519b743d8 547 Gene3D G3DSA:3.40.50.620 395 520 1.5E-10 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS01615 6968ee3426a1fcddde1fa43b811a783d 206 SUPERFAMILY SSF52166 1 205 1.57E-68 T 26-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 RGE_RS01615 6968ee3426a1fcddde1fa43b811a783d 206 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 206 30.979 T 26-04-2016 IPR013005 50S ribosomal protein uL4 RGE_RS01615 6968ee3426a1fcddde1fa43b811a783d 206 PANTHER PTHR10746 1 204 5.8E-68 T 26-04-2016 IPR013005 50S ribosomal protein uL4 RGE_RS01615 6968ee3426a1fcddde1fa43b811a783d 206 Gene3D G3DSA:3.40.1370.10 57 205 4.8E-50 T 26-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 RGE_RS01615 6968ee3426a1fcddde1fa43b811a783d 206 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 17 203 2.0E-67 T 26-04-2016 IPR013005 50S ribosomal protein uL4 RGE_RS01615 6968ee3426a1fcddde1fa43b811a783d 206 Pfam PF00573 Ribosomal protein L4/L1 family 18 203 3.1E-59 T 26-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 RGE_RS16700 399f21981b2862d82643018f67da7813 266 PANTHER PTHR35369 36 210 1.1E-25 T 26-04-2016 RGE_RS16700 399f21981b2862d82643018f67da7813 266 PANTHER PTHR35369:SF1 36 210 1.1E-25 T 26-04-2016 RGE_RS16700 399f21981b2862d82643018f67da7813 266 SUPERFAMILY SSF52540 71 196 4.25E-25 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16700 399f21981b2862d82643018f67da7813 266 PIRSF PIRSF037290 27 258 1.8E-56 T 26-04-2016 IPR017166 Uncharacterised conserved protein UCP037290 RGE_RS16700 399f21981b2862d82643018f67da7813 266 Gene3D G3DSA:3.40.50.300 71 196 1.2E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09205 42ad6453b6b582f0f9fdda50a166042b 300 PANTHER PTHR30537 1 297 2.5E-120 T 26-04-2016 RGE_RS09205 42ad6453b6b582f0f9fdda50a166042b 300 PANTHER PTHR30537:SF5 1 297 2.5E-120 T 26-04-2016 RGE_RS09205 42ad6453b6b582f0f9fdda50a166042b 300 Pfam PF03466 LysR substrate binding domain 88 292 4.6E-44 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS09205 42ad6453b6b582f0f9fdda50a166042b 300 SUPERFAMILY SSF46785 7 87 6.18E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09205 42ad6453b6b582f0f9fdda50a166042b 300 Gene3D G3DSA:3.40.190.10 92 174 1.6E-25 T 26-04-2016 RGE_RS09205 42ad6453b6b582f0f9fdda50a166042b 300 Gene3D G3DSA:1.10.10.10 6 85 6.6E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09205 42ad6453b6b582f0f9fdda50a166042b 300 Gene3D G3DSA:3.40.190.10 175 260 3.7E-23 T 26-04-2016 RGE_RS09205 42ad6453b6b582f0f9fdda50a166042b 300 SUPERFAMILY SSF53850 89 297 4.5E-50 T 26-04-2016 RGE_RS09205 42ad6453b6b582f0f9fdda50a166042b 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 6.7E-18 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS13055 4c423421800a4690af90ee25af5048af 286 Pfam PF12697 Alpha/beta hydrolase family 33 276 3.3E-19 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS13055 4c423421800a4690af90ee25af5048af 286 PANTHER PTHR10992 228 286 3.3E-33 T 26-04-2016 RGE_RS13055 4c423421800a4690af90ee25af5048af 286 PANTHER PTHR10992 17 212 3.3E-33 T 26-04-2016 RGE_RS13055 4c423421800a4690af90ee25af5048af 286 Gene3D G3DSA:3.40.50.1820 17 284 1.3E-76 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS13055 4c423421800a4690af90ee25af5048af 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 2.2E-5 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS13055 4c423421800a4690af90ee25af5048af 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 231 245 2.2E-5 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS13055 4c423421800a4690af90ee25af5048af 286 PRINTS PR00111 Alpha/beta hydrolase fold signature 56 71 2.2E-5 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS13055 4c423421800a4690af90ee25af5048af 286 SUPERFAMILY SSF53474 17 276 1.47E-44 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 PANTHER PTHR24423 659 881 6.8E-132 T 26-04-2016 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 PANTHER PTHR24423 25 204 6.8E-132 T 26-04-2016 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 PANTHER PTHR24423 248 316 6.8E-132 T 26-04-2016 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 Gene3D G3DSA:1.10.287.130 657 722 1.2E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 SUPERFAMILY SSF55781 508 645 6.28E-7 T 26-04-2016 IPR029016 GAF domain-like RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 SMART SM00387 770 884 2.1E-29 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 24 237 3.4E-92 T 26-04-2016 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 Gene3D G3DSA:1.20.120.620 400 503 4.9E-35 T 26-04-2016 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 SUPERFAMILY SSF52402 260 368 4.44E-5 T 26-04-2016 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 PRINTS PR00344 Bacterial sensor protein C-terminal signature 868 881 4.4E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 PRINTS PR00344 Bacterial sensor protein C-terminal signature 807 821 4.4E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 PRINTS PR00344 Bacterial sensor protein C-terminal signature 825 835 4.4E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 PRINTS PR00344 Bacterial sensor protein C-terminal signature 840 858 4.4E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 Pfam PF13493 Domain of unknown function (DUF4118) 403 509 4.6E-29 T 26-04-2016 IPR025201 Sensor protein KdpD, transmembrane domain RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 Gene3D G3DSA:3.30.450.40 507 644 1.2E-4 T 26-04-2016 IPR029016 GAF domain-like RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 SMART SM00388 661 726 1.4E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 Gene3D G3DSA:3.30.565.10 729 888 3.0E-34 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 Gene3D G3DSA:3.40.50.620 253 355 1.0E-4 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 Gene3D G3DSA:3.40.50.300 23 236 3.4E-94 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 SUPERFAMILY SSF47384 655 726 1.37E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 774 882 1.3E-15 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 Pfam PF00512 His Kinase A (phospho-acceptor) domain 662 726 6.7E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 PANTHER PTHR24423:SF562 659 881 6.8E-132 T 26-04-2016 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 PANTHER PTHR24423:SF562 25 204 6.8E-132 T 26-04-2016 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 PANTHER PTHR24423:SF562 248 316 6.8E-132 T 26-04-2016 RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 SUPERFAMILY SSF55874 716 883 1.83E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10085 9022e75caa844d498fed0a3d9a521fc9 901 Pfam PF13492 GAF domain 547 642 6.2E-9 T 26-04-2016 IPR003018 GAF domain GO:0005515 RGE_RS16895 1cfcc31bb2a4529d26f69f08f1c2f5a5 848 SUPERFAMILY SSF56059 82 243 1.91E-13 T 26-04-2016 RGE_RS16895 1cfcc31bb2a4529d26f69f08f1c2f5a5 848 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 525 838 3.3E-54 T 26-04-2016 IPR007296 Domain of unknown function DUF403 RGE_RS16895 1cfcc31bb2a4529d26f69f08f1c2f5a5 848 PANTHER PTHR34595 29 848 6.6E-221 T 26-04-2016 RGE_RS16895 1cfcc31bb2a4529d26f69f08f1c2f5a5 848 PANTHER PTHR34595:SF1 29 848 6.6E-221 T 26-04-2016 RGE_RS16895 1cfcc31bb2a4529d26f69f08f1c2f5a5 848 Pfam PF14403 Circularly permuted ATP-grasp type 2 105 476 1.5E-138 T 26-04-2016 IPR025841 Circularly permuted ATP-grasp type 2 RGE_RS14250 7189c608342202b70ed1240f9fae67bf 262 Pfam PF03180 NLPA lipoprotein 25 262 7.5E-103 T 26-04-2016 IPR004872 Lipoprotein NlpA family RGE_RS14250 7189c608342202b70ed1240f9fae67bf 262 SUPERFAMILY SSF53850 25 262 3.26E-86 T 26-04-2016 RGE_RS14250 7189c608342202b70ed1240f9fae67bf 262 Gene3D G3DSA:3.40.190.10 22 153 2.3E-56 T 26-04-2016 RGE_RS14250 7189c608342202b70ed1240f9fae67bf 262 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 32 261 8.9E-72 T 26-04-2016 IPR004872 Lipoprotein NlpA family RGE_RS14250 7189c608342202b70ed1240f9fae67bf 262 PANTHER PTHR30429 1 262 2.6E-136 T 26-04-2016 IPR004872 Lipoprotein NlpA family RGE_RS14250 7189c608342202b70ed1240f9fae67bf 262 PANTHER PTHR30429:SF0 1 262 2.6E-136 T 26-04-2016 RGE_RS14250 7189c608342202b70ed1240f9fae67bf 262 PIRSF PIRSF002854 3 262 5.0E-106 T 26-04-2016 IPR004872 Lipoprotein NlpA family RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 Gene3D G3DSA:3.40.1190.10 90 312 2.6E-64 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 SUPERFAMILY SSF53244 324 443 1.53E-30 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 Pfam PF01225 Mur ligase family, catalytic domain 28 95 6.7E-10 T 26-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 1 444 31.304 T 26-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 PANTHER PTHR23135:SF3 12 446 5.1E-138 T 26-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 Pfam PF08245 Mur ligase middle domain 106 294 5.7E-40 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 Gene3D G3DSA:3.40.1390.10 17 89 1.3E-21 T 26-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 SUPERFAMILY SSF63418 4 98 8.89E-24 T 26-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 PANTHER PTHR23135 12 446 5.1E-138 T 26-04-2016 RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 SUPERFAMILY SSF53623 102 313 2.09E-49 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 Pfam PF02875 Mur ligase family, glutamate ligase domain 323 393 1.8E-13 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 31 443 2.2E-119 T 26-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04665 0fa7e1e88f8599b72846142d50170ce8 448 Gene3D G3DSA:3.90.190.20 314 445 4.7E-38 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS06950 57c95c432f9ff86451ddd429dca4a7ad 413 Pfam PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 80 153 1.0E-19 T 26-04-2016 IPR007516 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal RGE_RS06950 57c95c432f9ff86451ddd429dca4a7ad 413 PANTHER PTHR31332 41 411 1.1E-104 T 26-04-2016 RGE_RS06950 57c95c432f9ff86451ddd429dca4a7ad 413 PANTHER PTHR31332:SF0 41 411 1.1E-104 T 26-04-2016 RGE_RS06950 57c95c432f9ff86451ddd429dca4a7ad 413 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 162 298 4.8E-30 T 26-04-2016 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal RGE_RS21125 afbbba85216cd279bd847d2900aab748 120 Pfam PF00072 Response regulator receiver domain 4 116 1.5E-21 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS21125 afbbba85216cd279bd847d2900aab748 120 Gene3D G3DSA:3.40.50.2300 1 119 6.8E-33 T 26-04-2016 RGE_RS21125 afbbba85216cd279bd847d2900aab748 120 SUPERFAMILY SSF52172 1 120 6.69E-33 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS21125 afbbba85216cd279bd847d2900aab748 120 SMART SM00448 2 115 5.3E-30 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS21125 afbbba85216cd279bd847d2900aab748 120 PANTHER PTHR26402 2 119 8.5E-33 T 26-04-2016 RGE_RS22885 4d9ef653c290dfbfa6f8a4a86e968b13 567 Gene3D G3DSA:3.30.300.30 437 542 1.6E-4 T 26-04-2016 RGE_RS22885 4d9ef653c290dfbfa6f8a4a86e968b13 567 Gene3D G3DSA:3.40.50.980 18 182 1.6E-30 T 26-04-2016 RGE_RS22885 4d9ef653c290dfbfa6f8a4a86e968b13 567 Gene3D G3DSA:2.30.38.10 378 429 6.1E-18 T 26-04-2016 RGE_RS22885 4d9ef653c290dfbfa6f8a4a86e968b13 567 Gene3D G3DSA:3.40.50.980 183 364 1.4E-26 T 26-04-2016 RGE_RS22885 4d9ef653c290dfbfa6f8a4a86e968b13 567 PANTHER PTHR24096:SF249 17 559 6.7E-195 T 26-04-2016 RGE_RS22885 4d9ef653c290dfbfa6f8a4a86e968b13 567 ProSitePatterns PS00455 Putative AMP-binding domain signature. 177 188 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS22885 4d9ef653c290dfbfa6f8a4a86e968b13 567 PANTHER PTHR24096 17 559 6.7E-195 T 26-04-2016 RGE_RS22885 4d9ef653c290dfbfa6f8a4a86e968b13 567 SUPERFAMILY SSF56801 14 552 5.76E-112 T 26-04-2016 RGE_RS22885 4d9ef653c290dfbfa6f8a4a86e968b13 567 Pfam PF00501 AMP-binding enzyme 21 436 3.2E-86 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS06460 984940588291fb50682551839c898d42 423 PANTHER PTHR39084 13 421 9.9E-32 T 26-04-2016 RGE_RS06460 984940588291fb50682551839c898d42 423 Pfam PF13194 Domain of unknown function (DUF4010) 185 391 2.9E-41 T 26-04-2016 IPR025105 Domain of unknown function DUF4010 RGE_RS06460 984940588291fb50682551839c898d42 423 Pfam PF02308 MgtC family 13 135 2.4E-14 T 26-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RGE_RS05345 c7bf5b0c7740370baf7b458bed0a5046 518 Gene3D G3DSA:3.90.1200.10 244 291 7.6E-4 T 26-04-2016 RGE_RS05345 c7bf5b0c7740370baf7b458bed0a5046 518 Pfam PF03109 ABC1 family 108 225 7.9E-34 T 26-04-2016 IPR004147 UbiB domain RGE_RS05345 c7bf5b0c7740370baf7b458bed0a5046 518 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 1 516 50.827 T 26-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 RGE_RS05345 c7bf5b0c7740370baf7b458bed0a5046 518 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 5 438 5.3E-171 T 26-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 RGE_RS05345 c7bf5b0c7740370baf7b458bed0a5046 518 SUPERFAMILY SSF56112 90 153 3.35E-44 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS05345 c7bf5b0c7740370baf7b458bed0a5046 518 SUPERFAMILY SSF56112 188 432 3.35E-44 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS05345 c7bf5b0c7740370baf7b458bed0a5046 518 PANTHER PTHR10566 3 455 1.8E-225 T 26-04-2016 RGE_RS05345 c7bf5b0c7740370baf7b458bed0a5046 518 PANTHER PTHR10566:SF79 3 455 1.8E-225 T 26-04-2016 RGE_RS10265 1e1aaa404d61b0246ad441d0c381a173 336 PIRSF PIRSF006268 9 336 5.5E-70 T 26-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 RGE_RS10265 1e1aaa404d61b0246ad441d0c381a173 336 Pfam PF02424 ApbE family 46 318 6.5E-66 T 26-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 RGE_RS10265 1e1aaa404d61b0246ad441d0c381a173 336 PANTHER PTHR30040:SF2 40 333 1.5E-73 T 26-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 RGE_RS10265 1e1aaa404d61b0246ad441d0c381a173 336 SUPERFAMILY SSF143631 42 333 6.28E-79 T 26-04-2016 IPR003374 ApbE-like domain RGE_RS10265 1e1aaa404d61b0246ad441d0c381a173 336 PANTHER PTHR30040 40 333 1.5E-73 T 26-04-2016 RGE_RS21440 a9b444167a138e0c0ebe27405398158a 317 PANTHER PTHR11473:SF24 49 261 3.8E-72 T 26-04-2016 RGE_RS21440 a9b444167a138e0c0ebe27405398158a 317 PANTHER PTHR11473 49 261 3.8E-72 T 26-04-2016 IPR001273 Aromatic amino acid hydroxylase GO:0004497|GO:0005506|GO:0009072|GO:0055114 RGE_RS21440 a9b444167a138e0c0ebe27405398158a 317 TIGRFAM TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase 40 280 1.4E-98 T 26-04-2016 IPR005960 Phenylalanine-4-hydroxylase, monomeric form GO:0004505|GO:0006559|GO:0055114 KEGG: 00360+1.14.16.1|KEGG: 00400+1.14.16.1|MetaCyc: PWY-6134|MetaCyc: PWY-7158|UniPathway: UPA00139 RGE_RS21440 a9b444167a138e0c0ebe27405398158a 317 ProSitePatterns PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature. 146 157 - T 26-04-2016 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site GO:0004497|GO:0005506|GO:0009072|GO:0055114 RGE_RS21440 a9b444167a138e0c0ebe27405398158a 317 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 48 262 2.8E-47 T 26-04-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 RGE_RS21440 a9b444167a138e0c0ebe27405398158a 317 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 208 226 1.0E-11 T 26-04-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 RGE_RS21440 a9b444167a138e0c0ebe27405398158a 317 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 103 125 1.0E-11 T 26-04-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 RGE_RS21440 a9b444167a138e0c0ebe27405398158a 317 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 240 259 1.0E-11 T 26-04-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 RGE_RS21440 a9b444167a138e0c0ebe27405398158a 317 Gene3D G3DSA:1.10.800.10 36 279 1.7E-91 T 26-04-2016 IPR001273 Aromatic amino acid hydroxylase GO:0004497|GO:0005506|GO:0009072|GO:0055114 RGE_RS21440 a9b444167a138e0c0ebe27405398158a 317 SUPERFAMILY SSF56534 35 277 1.44E-95 T 26-04-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 RGE_RS22865 d6eba692f9ef28451ad816bbd568ec37 396 Gene3D G3DSA:2.40.50.100 73 105 2.4E-14 T 26-04-2016 RGE_RS22865 d6eba692f9ef28451ad816bbd568ec37 396 Gene3D G3DSA:2.40.50.100 194 219 2.4E-14 T 26-04-2016 RGE_RS22865 d6eba692f9ef28451ad816bbd568ec37 396 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 60 394 1.6E-50 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS22865 d6eba692f9ef28451ad816bbd568ec37 396 PANTHER PTHR30469:SF15 6 395 6.3E-59 T 26-04-2016 RGE_RS22865 d6eba692f9ef28451ad816bbd568ec37 396 PANTHER PTHR30469 6 395 6.3E-59 T 26-04-2016 RGE_RS22865 d6eba692f9ef28451ad816bbd568ec37 396 SUPERFAMILY SSF111369 63 310 7.19E-22 T 26-04-2016 RGE_RS22865 d6eba692f9ef28451ad816bbd568ec37 396 Pfam PF00529 HlyD membrane-fusion protein of T1SS 35 325 2.9E-6 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS22865 d6eba692f9ef28451ad816bbd568ec37 396 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 307 2.5E-24 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 Pfam PF01256 Carbohydrate kinase 243 469 4.7E-42 T 26-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 428 438 - T 26-04-2016 IPR017953 Carbohydrate kinase, predicted, conserved site RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 PIRSF PIRSF017184 15 488 1.2E-95 T 26-04-2016 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 Pfam PF03853 YjeF-related protein N-terminus 34 193 1.1E-44 T 26-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 Gene3D G3DSA:3.40.50.10260 13 234 3.9E-65 T 26-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 PANTHER PTHR12592:SF0 3 487 1.5E-89 T 26-04-2016 RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 Gene3D G3DSA:3.40.1190.20 235 486 2.0E-67 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 220 486 16.613 T 26-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 14 214 22.509 T 26-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 231 485 9.5E-51 T 26-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 SUPERFAMILY SSF53613 229 485 3.1E-54 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 26 213 3.5E-38 T 26-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 SUPERFAMILY SSF64153 13 241 3.01E-54 T 26-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RGE_RS13330 e2e608efc2e4375098280afd09fee83a 488 PANTHER PTHR12592 3 487 1.5E-89 T 26-04-2016 RGE_RS04675 ffe2cf691276e96958a60ee82b851f1d 500 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 124 147 - T 26-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 RGE_RS04675 ffe2cf691276e96958a60ee82b851f1d 500 SUPERFAMILY SSF53623 120 349 1.3E-48 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04675 ffe2cf691276e96958a60ee82b851f1d 500 Gene3D G3DSA:3.90.190.20 353 490 1.3E-40 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS04675 ffe2cf691276e96958a60ee82b851f1d 500 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 493 31.304 T 26-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04675 ffe2cf691276e96958a60ee82b851f1d 500 Gene3D G3DSA:3.40.1190.10 102 351 5.2E-70 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04675 ffe2cf691276e96958a60ee82b851f1d 500 PANTHER PTHR23135:SF2 1 497 2.7E-130 T 26-04-2016 RGE_RS04675 ffe2cf691276e96958a60ee82b851f1d 500 SUPERFAMILY SSF53244 351 493 8.01E-40 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS04675 ffe2cf691276e96958a60ee82b851f1d 500 PANTHER PTHR23135 1 497 2.7E-130 T 26-04-2016 RGE_RS04675 ffe2cf691276e96958a60ee82b851f1d 500 Gene3D G3DSA:3.40.50.720 5 99 1.9E-16 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04675 ffe2cf691276e96958a60ee82b851f1d 500 SUPERFAMILY SSF51984 5 93 1.06E-11 T 26-04-2016 RGE_RS04675 ffe2cf691276e96958a60ee82b851f1d 500 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 491 8.6E-103 T 26-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04675 ffe2cf691276e96958a60ee82b851f1d 500 Pfam PF08245 Mur ligase middle domain 126 332 1.2E-27 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS19135 e148c76bb028349c3fde42db41b2482c 266 PANTHER PTHR30294:SF13 3 266 2.1E-70 T 26-04-2016 RGE_RS19135 e148c76bb028349c3fde42db41b2482c 266 Pfam PF01061 ABC-2 type transporter 2 222 1.5E-31 T 26-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RGE_RS19135 e148c76bb028349c3fde42db41b2482c 266 PIRSF PIRSF006648 2 250 1.2E-37 T 26-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RGE_RS19135 e148c76bb028349c3fde42db41b2482c 266 TIGRFAM TIGR03861 phenyl_ABC_PedC: alcohol ABC transporter, permease protein 3 253 2.6E-105 T 26-04-2016 IPR022403 Alcohol ABC transporter, permease protein RGE_RS19135 e148c76bb028349c3fde42db41b2482c 266 PANTHER PTHR30294 3 266 2.1E-70 T 26-04-2016 RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SUPERFAMILY SSF55785 72 168 9.91E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SMART SM00052 635 881 6.4E-121 T 26-04-2016 IPR001633 EAL domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SMART SM00086 412 454 0.0089 T 26-04-2016 IPR001610 PAC motif RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SMART SM00086 142 183 150.0 T 26-04-2016 IPR001610 PAC motif RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SMART SM00086 290 332 6.7E-9 T 26-04-2016 IPR001610 PAC motif RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SUPERFAMILY SSF141868 640 889 3.01E-89 T 26-04-2016 IPR001633 EAL domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SUPERFAMILY SSF55785 227 332 1.1E-26 T 26-04-2016 IPR000014 PAS domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 Pfam PF13426 PAS domain 351 452 6.4E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 Pfam PF13426 PAS domain 229 330 2.1E-17 T 26-04-2016 IPR000014 PAS domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SMART SM00091 218 284 5.1E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SMART SM00091 72 138 7.3E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SMART SM00091 340 407 2.1E-4 T 26-04-2016 IPR000014 PAS domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SUPERFAMILY SSF55073 470 626 2.43E-52 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 Pfam PF00563 EAL domain 641 876 1.5E-74 T 26-04-2016 IPR001633 EAL domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 Gene3D G3DSA:3.30.450.20 232 332 1.4E-29 T 26-04-2016 RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 Gene3D G3DSA:3.30.450.20 72 180 4.4E-12 T 26-04-2016 RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 Pfam PF08448 PAS fold 81 183 1.8E-7 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SUPERFAMILY SSF55785 345 452 3.44E-26 T 26-04-2016 IPR000014 PAS domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 Gene3D G3DSA:3.30.70.270 467 632 8.1E-61 T 26-04-2016 RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 SMART SM00267 454 625 5.7E-64 T 26-04-2016 IPR000160 GGDEF domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 345 459 2.3E-20 T 26-04-2016 IPR000014 PAS domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 229 339 8.3E-15 T 26-04-2016 IPR000014 PAS domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 PANTHER PTHR10799 444 735 2.1E-84 T 26-04-2016 RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 463 622 3.2E-44 T 26-04-2016 IPR000160 GGDEF domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 PANTHER PTHR10799:SF774 444 735 2.1E-84 T 26-04-2016 RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 Pfam PF00990 Diguanylate cyclase, GGDEF domain 465 621 2.8E-48 T 26-04-2016 IPR000160 GGDEF domain RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 Gene3D G3DSA:3.30.450.20 349 452 1.0E-25 T 26-04-2016 RGE_RS19355 9eeed22933dd0bef39528d3d82e3e994 904 Gene3D G3DSA:3.20.20.450 639 888 1.7E-96 T 26-04-2016 IPR001633 EAL domain RGE_RS02135 f83c3175da4efba1697fa0d3c81458ae 414 Pfam PF00005 ABC transporter 50 181 1.2E-20 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS02135 f83c3175da4efba1697fa0d3c81458ae 414 SMART SM00382 59 232 7.1E-12 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS02135 f83c3175da4efba1697fa0d3c81458ae 414 SUPERFAMILY SSF52540 47 244 1.6E-46 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02135 f83c3175da4efba1697fa0d3c81458ae 414 PANTHER PTHR24220:SF117 47 258 4.8E-102 T 26-04-2016 RGE_RS02135 f83c3175da4efba1697fa0d3c81458ae 414 PANTHER PTHR24220:SF117 8 22 4.8E-102 T 26-04-2016 RGE_RS02135 f83c3175da4efba1697fa0d3c81458ae 414 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS02135 f83c3175da4efba1697fa0d3c81458ae 414 Gene3D G3DSA:2.70.50.60 271 369 8.2E-4 T 26-04-2016 RGE_RS02135 f83c3175da4efba1697fa0d3c81458ae 414 Pfam PF14524 Wzt C-terminal domain 268 389 4.8E-9 T 26-04-2016 IPR029439 Wzt, C-terminal RGE_RS02135 f83c3175da4efba1697fa0d3c81458ae 414 Gene3D G3DSA:3.40.50.300 6 245 1.4E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02135 f83c3175da4efba1697fa0d3c81458ae 414 PANTHER PTHR24220 47 258 4.8E-102 T 26-04-2016 RGE_RS02135 f83c3175da4efba1697fa0d3c81458ae 414 PANTHER PTHR24220 8 22 4.8E-102 T 26-04-2016 RGE_RS08755 9ccfa1f4d010ff5960a099998ca92455 849 Gene3D G3DSA:3.30.420.10 442 623 7.9E-21 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS08755 9ccfa1f4d010ff5960a099998ca92455 849 Pfam PF09299 Mu transposase, C-terminal 664 712 1.3E-8 T 26-04-2016 IPR015378 Transposase-like, Mu, C-terminal RGE_RS08755 9ccfa1f4d010ff5960a099998ca92455 849 Pfam PF00665 Integrase core domain 444 567 1.6E-15 T 26-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RGE_RS08755 9ccfa1f4d010ff5960a099998ca92455 849 SUPERFAMILY SSF53098 443 577 1.16E-16 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS08755 9ccfa1f4d010ff5960a099998ca92455 849 Gene3D G3DSA:2.30.30.130 663 710 3.0E-5 T 26-04-2016 IPR009004 Transposase, Mu, C-terminal RGE_RS08755 9ccfa1f4d010ff5960a099998ca92455 849 SUPERFAMILY SSF50610 659 712 2.22E-5 T 26-04-2016 IPR009004 Transposase, Mu, C-terminal RGE_RS02465 5731eb43224181437686410d24db095d 478 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 237 397 1.8E-81 T 26-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RGE_RS02465 5731eb43224181437686410d24db095d 478 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 259 275 - T 26-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RGE_RS02465 5731eb43224181437686410d24db095d 478 SMART SM00996 12 477 0.0 T 26-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RGE_RS02465 5731eb43224181437686410d24db095d 478 Gene3D G3DSA:3.40.50.720 276 376 1.3E-14 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS02465 5731eb43224181437686410d24db095d 478 PANTHER PTHR23420 187 478 0.0 T 26-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RGE_RS02465 5731eb43224181437686410d24db095d 478 PANTHER PTHR23420 11 151 0.0 T 26-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RGE_RS02465 5731eb43224181437686410d24db095d 478 SUPERFAMILY SSF52283 10 153 7.37E-107 T 26-04-2016 RGE_RS02465 5731eb43224181437686410d24db095d 478 SUPERFAMILY SSF52283 398 478 7.37E-107 T 26-04-2016 RGE_RS02465 5731eb43224181437686410d24db095d 478 SUPERFAMILY SSF52283 189 236 7.37E-107 T 26-04-2016 RGE_RS02465 5731eb43224181437686410d24db095d 478 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 8 470 47.58 T 26-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RGE_RS02465 5731eb43224181437686410d24db095d 478 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 13 470 2.3E-181 T 26-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RGE_RS02465 5731eb43224181437686410d24db095d 478 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 84 98 - T 26-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RGE_RS02465 5731eb43224181437686410d24db095d 478 Gene3D G3DSA:3.40.50.1480 188 275 7.1E-116 T 26-04-2016 RGE_RS02465 5731eb43224181437686410d24db095d 478 Gene3D G3DSA:3.40.50.1480 10 152 7.1E-116 T 26-04-2016 RGE_RS02465 5731eb43224181437686410d24db095d 478 PIRSF PIRSF001109 2 478 4.6E-185 T 26-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RGE_RS02465 5731eb43224181437686410d24db095d 478 SMART SM00997 237 397 7.8E-114 T 26-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RGE_RS02465 5731eb43224181437686410d24db095d 478 Gene3D G3DSA:3.40.50.1480 398 478 1.9E-32 T 26-04-2016 RGE_RS02465 5731eb43224181437686410d24db095d 478 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 12 477 1.5E-138 T 26-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RGE_RS02465 5731eb43224181437686410d24db095d 478 SUPERFAMILY SSF51735 237 397 3.27E-78 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PANTHER PTHR10133 305 915 0.0 T 26-04-2016 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PANTHER PTHR10133 1 286 0.0 T 26-04-2016 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 SUPERFAMILY SSF47807 170 290 4.04E-29 T 26-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 TIGRFAM TIGR00593 pola: DNA polymerase I 8 916 1.4E-261 T 26-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 Pfam PF01612 3'-5' exonuclease 319 505 1.9E-33 T 26-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 SMART SM00475 4 258 1.7E-105 T 26-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 SMART SM00482 674 880 3.4E-118 T 26-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 170 255 7.9E-22 T 26-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 801 812 1.7E-74 T 26-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 863 876 1.7E-74 T 26-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 718 731 1.7E-74 T 26-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 666 681 1.7E-74 T 26-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 833 849 1.7E-74 T 26-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 688 711 1.7E-74 T 26-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 779 790 1.7E-74 T 26-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 742 767 1.7E-74 T 26-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PRINTS PR00868 DNA-polymerase family A (pol I) signature 643 665 1.7E-74 T 26-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 Gene3D G3DSA:3.30.420.10 317 530 1.3E-79 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PANTHER PTHR10133:SF27 305 915 0.0 T 26-04-2016 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 PANTHER PTHR10133:SF27 1 286 0.0 T 26-04-2016 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 SUPERFAMILY SSF88723 2 169 2.44E-55 T 26-04-2016 IPR029060 PIN domain-like RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 SMART SM00279 172 207 7.2E-13 T 26-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 Pfam PF00476 DNA polymerase family A 539 914 4.2E-150 T 26-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 Gene3D G3DSA:1.20.1060.10 531 650 5.6E-35 T 26-04-2016 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 Gene3D G3DSA:3.30.70.370 806 916 8.9E-64 T 26-04-2016 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 Gene3D G3DSA:3.30.70.370 651 699 8.9E-64 T 26-04-2016 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 Gene3D G3DSA:1.10.150.20 700 805 4.7E-35 T 26-04-2016 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 SUPERFAMILY SSF56672 510 916 1.11E-155 T 26-04-2016 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 Gene3D G3DSA:3.40.50.1010 7 184 3.7E-65 T 26-04-2016 IPR029060 PIN domain-like RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 SUPERFAMILY SSF53098 317 505 6.17E-49 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 SMART SM00474 319 505 1.1E-29 T 26-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 8 169 2.8E-50 T 26-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 Gene3D G3DSA:1.10.150.20 185 244 7.9E-23 T 26-04-2016 RGE_RS16500 9e258c3afad47b80a468e1cb130e769b 916 ProSitePatterns PS00447 DNA polymerase family A signature. 742 761 - T 26-04-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 SMART SM00073 655 750 0.0084 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 SMART SM00387 342 458 1.8E-38 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 SMART SM00448 484 599 9.3E-33 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 Pfam PF00512 His Kinase A (phospho-acceptor) domain 229 293 6.2E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 SMART SM00388 228 293 1.4E-23 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 SUPERFAMILY SSF52172 482 606 1.85E-35 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 Pfam PF01627 Hpt domain 669 744 1.3E-8 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 PANTHER PTHR24423:SF382 15 31 2.9E-142 T 26-04-2016 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 PANTHER PTHR24423:SF382 156 172 2.9E-142 T 26-04-2016 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 PANTHER PTHR24423:SF382 224 640 2.9E-142 T 26-04-2016 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 SUPERFAMILY SSF55874 282 454 1.05E-42 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 PANTHER PTHR24423 15 31 2.9E-142 T 26-04-2016 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 PANTHER PTHR24423 156 172 2.9E-142 T 26-04-2016 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 PANTHER PTHR24423 224 640 2.9E-142 T 26-04-2016 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 342 454 1.3E-28 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 Pfam PF05227 CHASE3 domain 49 184 5.2E-38 T 26-04-2016 IPR007891 CHASE3 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 Gene3D G3DSA:1.20.120.160 641 744 2.2E-12 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 Pfam PF00072 Response regulator receiver domain 487 599 4.1E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 Gene3D G3DSA:3.40.50.2300 473 607 3.8E-37 T 26-04-2016 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 SUPERFAMILY SSF47384 214 294 2.94E-22 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 SUPERFAMILY SSF47226 644 741 3.79E-12 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 SUPERFAMILY SSF47226 585 595 3.79E-12 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 Gene3D G3DSA:1.10.287.130 220 289 1.3E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 397 1.4E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 455 1.4E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 1.4E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 411 1.4E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS09200 19c295f74d45491fa7a2e3919d5e8ec9 759 Gene3D G3DSA:3.30.565.10 294 456 1.4E-44 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 SUPERFAMILY SSF52096 197 273 1.62E-13 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 Gene3D G3DSA:3.90.226.10 205 299 8.2E-44 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 Gene3D G3DSA:3.90.226.10 454 529 4.0E-56 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 Gene3D G3DSA:3.90.226.10 307 416 4.0E-56 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 Gene3D G3DSA:3.90.226.10 21 162 8.2E-44 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 Pfam PF01343 Peptidase family S49 377 527 2.5E-41 T 26-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 Pfam PF01343 Peptidase family S49 126 277 2.3E-23 T 26-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 21 593 1.6E-147 T 26-04-2016 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 PANTHER PTHR33209:SF1 2 539 4.9E-155 T 26-04-2016 RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 SUPERFAMILY SSF52096 453 513 8.03E-35 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 SUPERFAMILY SSF52096 309 424 8.03E-35 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 SUPERFAMILY SSF52096 41 166 1.62E-13 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 PANTHER PTHR33209 2 539 4.9E-155 T 26-04-2016 RGE_RS01020 7aaa33f44e06d9b85870e15c406efdba 608 PIRSF PIRSF001217 1 605 9.9E-172 T 26-04-2016 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 RGE_RS07410 ca891db5b77877355f41b59d4fb1c020 490 PANTHER PTHR21343 1 449 9.6E-155 T 26-04-2016 RGE_RS07410 ca891db5b77877355f41b59d4fb1c020 490 Gene3D G3DSA:3.40.50.300 6 247 9.0E-39 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07410 ca891db5b77877355f41b59d4fb1c020 490 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 9 238 4.0E-21 T 26-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RGE_RS07410 ca891db5b77877355f41b59d4fb1c020 490 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 8 449 5.2E-116 T 26-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 RGE_RS07410 ca891db5b77877355f41b59d4fb1c020 490 PANTHER PTHR21343:SF1 1 449 9.6E-155 T 26-04-2016 RGE_RS07410 ca891db5b77877355f41b59d4fb1c020 490 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 259 451 3.6E-44 T 26-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 RGE_RS07410 ca891db5b77877355f41b59d4fb1c020 490 Gene3D G3DSA:3.40.50.880 259 456 1.6E-36 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS07410 ca891db5b77877355f41b59d4fb1c020 490 SUPERFAMILY SSF52317 259 445 1.15E-34 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS07410 ca891db5b77877355f41b59d4fb1c020 490 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 490 147.84 T 26-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 RGE_RS07410 ca891db5b77877355f41b59d4fb1c020 490 SUPERFAMILY SSF52540 6 246 3.48E-46 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11100 634d2456ccc3cfcff4660fc00aef6d95 437 Gene3D G3DSA:3.40.190.10 23 150 1.8E-16 T 26-04-2016 RGE_RS11100 634d2456ccc3cfcff4660fc00aef6d95 437 Gene3D G3DSA:3.40.190.10 151 350 2.4E-48 T 26-04-2016 RGE_RS11100 634d2456ccc3cfcff4660fc00aef6d95 437 SUPERFAMILY SSF53850 23 377 4.67E-70 T 26-04-2016 RGE_RS11100 634d2456ccc3cfcff4660fc00aef6d95 437 PANTHER PTHR30061:SF3 1 434 4.6E-115 T 26-04-2016 RGE_RS11100 634d2456ccc3cfcff4660fc00aef6d95 437 Pfam PF01547 Bacterial extracellular solute-binding protein 39 325 7.8E-38 T 26-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 RGE_RS11100 634d2456ccc3cfcff4660fc00aef6d95 437 PANTHER PTHR30061 1 434 4.6E-115 T 26-04-2016 RGE_RS14210 33a999d79bc796a0e221ebc73226d74c 314 Gene3D G3DSA:3.40.190.10 184 262 4.6E-27 T 26-04-2016 RGE_RS14210 33a999d79bc796a0e221ebc73226d74c 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 64 1.1E-12 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14210 33a999d79bc796a0e221ebc73226d74c 314 Gene3D G3DSA:1.10.10.10 1 81 1.0E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14210 33a999d79bc796a0e221ebc73226d74c 314 SUPERFAMILY SSF46785 12 113 6.53E-11 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14210 33a999d79bc796a0e221ebc73226d74c 314 Pfam PF03466 LysR substrate binding domain 89 296 6.1E-43 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS14210 33a999d79bc796a0e221ebc73226d74c 314 SUPERFAMILY SSF53850 90 299 1.49E-40 T 26-04-2016 RGE_RS14210 33a999d79bc796a0e221ebc73226d74c 314 PANTHER PTHR30126 1 310 5.7E-126 T 26-04-2016 RGE_RS14210 33a999d79bc796a0e221ebc73226d74c 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.2E-7 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14210 33a999d79bc796a0e221ebc73226d74c 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.2E-7 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14210 33a999d79bc796a0e221ebc73226d74c 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.2E-7 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14210 33a999d79bc796a0e221ebc73226d74c 314 Gene3D G3DSA:3.40.190.10 91 183 8.5E-21 T 26-04-2016 RGE_RS14210 33a999d79bc796a0e221ebc73226d74c 314 PANTHER PTHR30126:SF6 1 310 5.7E-126 T 26-04-2016 RGE_RS19085 f678cb6a09357c206e2eb9c3f30819a8 134 Pfam PF03061 Thioesterase superfamily 21 105 9.1E-20 T 26-04-2016 IPR006683 Thioesterase domain RGE_RS19085 f678cb6a09357c206e2eb9c3f30819a8 134 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 10 126 9.3E-34 T 26-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RGE_RS19085 f678cb6a09357c206e2eb9c3f30819a8 134 PANTHER PTHR31793:SF9 7 134 1.3E-44 T 26-04-2016 RGE_RS19085 f678cb6a09357c206e2eb9c3f30819a8 134 PIRSF PIRSF003230 1 134 5.8E-47 T 26-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RGE_RS19085 f678cb6a09357c206e2eb9c3f30819a8 134 Gene3D G3DSA:3.10.129.10 3 133 1.8E-49 T 26-04-2016 IPR029069 HotDog domain RGE_RS19085 f678cb6a09357c206e2eb9c3f30819a8 134 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 7 131 1.6E-49 T 26-04-2016 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 KEGG: 00360+3.1.2.-|KEGG: 00362+3.1.2.-|KEGG: 00592+3.1.2.-|KEGG: 00903+3.1.2.- RGE_RS19085 f678cb6a09357c206e2eb9c3f30819a8 134 SUPERFAMILY SSF54637 4 133 7.48E-42 T 26-04-2016 IPR029069 HotDog domain RGE_RS19085 f678cb6a09357c206e2eb9c3f30819a8 134 PANTHER PTHR31793 7 134 1.3E-44 T 26-04-2016 RGE_RS10660 6fead46e17f74dc91ffdcfa94a4f5f0a 375 Gene3D G3DSA:2.40.50.100 174 206 1.7E-13 T 26-04-2016 RGE_RS10660 6fead46e17f74dc91ffdcfa94a4f5f0a 375 Gene3D G3DSA:2.40.50.100 67 99 1.7E-13 T 26-04-2016 RGE_RS10660 6fead46e17f74dc91ffdcfa94a4f5f0a 375 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 359 3.1E-59 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS10660 6fead46e17f74dc91ffdcfa94a4f5f0a 375 PANTHER PTHR30469 42 373 6.8E-56 T 26-04-2016 RGE_RS10660 6fead46e17f74dc91ffdcfa94a4f5f0a 375 SUPERFAMILY SSF111369 58 286 2.88E-20 T 26-04-2016 RGE_RS10660 6fead46e17f74dc91ffdcfa94a4f5f0a 375 PANTHER PTHR30469:SF15 42 373 6.8E-56 T 26-04-2016 RGE_RS10660 6fead46e17f74dc91ffdcfa94a4f5f0a 375 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 268 1.6E-16 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS00530 240026f7ab307107fe4861295fefec1a 202 Gene3D G3DSA:1.10.10.60 14 63 2.8E-17 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS00530 240026f7ab307107fe4861295fefec1a 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 2.4E-9 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS00530 240026f7ab307107fe4861295fefec1a 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 2.4E-9 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS00530 240026f7ab307107fe4861295fefec1a 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 64 4.4E-14 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS00530 240026f7ab307107fe4861295fefec1a 202 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 60 - T 26-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RGE_RS00530 240026f7ab307107fe4861295fefec1a 202 Gene3D G3DSA:1.10.357.10 64 199 9.2E-12 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS00530 240026f7ab307107fe4861295fefec1a 202 SUPERFAMILY SSF46689 14 78 6.48E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS00530 240026f7ab307107fe4861295fefec1a 202 SUPERFAMILY SSF48498 121 198 3.74E-7 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS00530 240026f7ab307107fe4861295fefec1a 202 PANTHER PTHR30055 2 193 2.0E-17 T 26-04-2016 RGE_RS03415 0eb4b683c66217aec3ee0d7a116a86fb 344 PANTHER PTHR30273 16 337 6.8E-42 T 26-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RGE_RS03415 0eb4b683c66217aec3ee0d7a116a86fb 344 Pfam PF04773 FecR protein 119 217 7.3E-18 T 26-04-2016 IPR006860 FecR protein RGE_RS03415 0eb4b683c66217aec3ee0d7a116a86fb 344 Pfam PF16220 Domain of unknown function (DUF4880) 25 65 2.2E-9 T 26-04-2016 IPR032623 FecR, N-terminal RGE_RS03415 0eb4b683c66217aec3ee0d7a116a86fb 344 PIRSF PIRSF018266 14 344 8.8E-71 T 26-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RGE_RS03415 0eb4b683c66217aec3ee0d7a116a86fb 344 PANTHER PTHR30273:SF2 16 337 6.8E-42 T 26-04-2016 RGE_RS18800 13888cf9a1303705a29d5c2610d82881 486 PANTHER PTHR30001 3 486 5.9E-194 T 26-04-2016 RGE_RS18800 13888cf9a1303705a29d5c2610d82881 486 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 423 3.0E-147 T 26-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 RGE_RS18800 13888cf9a1303705a29d5c2610d82881 486 SUPERFAMILY SSF50249 40 124 2.57E-16 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS18800 13888cf9a1303705a29d5c2610d82881 486 Gene3D G3DSA:2.40.50.140 31 124 2.0E-29 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS18800 13888cf9a1303705a29d5c2610d82881 486 Pfam PF10150 Ribonuclease E/G family 120 390 1.2E-98 T 26-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RGE_RS18800 13888cf9a1303705a29d5c2610d82881 486 SMART SM00316 38 118 6.4E-8 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS19115 e62466d69b740c81a2e61cf4a3596ffd 225 SUPERFAMILY SSF48317 10 215 1.57E-12 T 26-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RGE_RS19115 e62466d69b740c81a2e61cf4a3596ffd 225 Gene3D G3DSA:1.20.144.10 56 211 4.7E-5 T 26-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RGE_RS19115 e62466d69b740c81a2e61cf4a3596ffd 225 Pfam PF01569 PAP2 superfamily 91 211 6.8E-13 T 26-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RGE_RS07835 adb8dbcd5123448af3e7f69d0d55f95f 464 Gene3D G3DSA:3.30.1330.90 11 157 2.9E-55 T 26-04-2016 IPR029009 Allosteric substrate binding domain RGE_RS07835 adb8dbcd5123448af3e7f69d0d55f95f 464 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 461 8.2E-207 T 26-04-2016 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 RGE_RS07835 adb8dbcd5123448af3e7f69d0d55f95f 464 SUPERFAMILY SSF143548 17 157 1.96E-46 T 26-04-2016 IPR029009 Allosteric substrate binding domain RGE_RS07835 adb8dbcd5123448af3e7f69d0d55f95f 464 PANTHER PTHR30182 1 462 6.6E-236 T 26-04-2016 RGE_RS07835 adb8dbcd5123448af3e7f69d0d55f95f 464 PANTHER PTHR30182:SF1 1 462 6.6E-236 T 26-04-2016 RGE_RS07835 adb8dbcd5123448af3e7f69d0d55f95f 464 Pfam PF03313 Serine dehydratase alpha chain 193 458 1.0E-101 T 26-04-2016 IPR005130 Serine dehydratase-like, alpha subunit RGE_RS07835 adb8dbcd5123448af3e7f69d0d55f95f 464 Pfam PF03315 Serine dehydratase beta chain 4 157 5.8E-59 T 26-04-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 SUPERFAMILY SSF51735 1 174 1.86E-37 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 PANTHER PTHR11728:SF1 1 326 2.2E-96 T 26-04-2016 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 1 317 34.661 T 26-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 PIRSF PIRSF000114 1 326 2.4E-86 T 26-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 174 315 1.9E-44 T 26-04-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 Gene3D G3DSA:1.10.1040.10 178 321 6.7E-50 T 26-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 PANTHER PTHR11728 1 326 2.2E-96 T 26-04-2016 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 127 147 3.2E-25 T 26-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 233 250 3.2E-25 T 26-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 193 217 3.2E-25 T 26-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 167 191 3.2E-25 T 26-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 5 22 3.2E-25 T 26-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 SUPERFAMILY SSF48179 174 326 7.6E-49 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 Gene3D G3DSA:3.40.50.720 1 177 3.7E-50 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20425 c897506f2f7008fe7195552ded16dd05 326 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2 153 6.0E-32 T 26-04-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RGE_RS04035 ee2e4ccf9682b9570b796cac29f8b0ba 192 Hamap MF_00109 Shikimate kinase [aroK]. 1 166 26.648 T 26-04-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS04035 ee2e4ccf9682b9570b796cac29f8b0ba 192 PRINTS PR01100 Shikimate kinase family signature 27 40 3.4E-21 T 26-04-2016 RGE_RS04035 ee2e4ccf9682b9570b796cac29f8b0ba 192 PRINTS PR01100 Shikimate kinase family signature 3 18 3.4E-21 T 26-04-2016 RGE_RS04035 ee2e4ccf9682b9570b796cac29f8b0ba 192 PRINTS PR01100 Shikimate kinase family signature 73 82 3.4E-21 T 26-04-2016 RGE_RS04035 ee2e4ccf9682b9570b796cac29f8b0ba 192 PRINTS PR01100 Shikimate kinase family signature 55 63 3.4E-21 T 26-04-2016 RGE_RS04035 ee2e4ccf9682b9570b796cac29f8b0ba 192 PRINTS PR01100 Shikimate kinase family signature 94 111 3.4E-21 T 26-04-2016 RGE_RS04035 ee2e4ccf9682b9570b796cac29f8b0ba 192 SUPERFAMILY SSF52540 2 162 1.1E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04035 ee2e4ccf9682b9570b796cac29f8b0ba 192 PANTHER PTHR21087:SF0 3 166 4.6E-56 T 26-04-2016 RGE_RS04035 ee2e4ccf9682b9570b796cac29f8b0ba 192 Pfam PF01202 Shikimate kinase 9 158 8.5E-50 T 26-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS04035 ee2e4ccf9682b9570b796cac29f8b0ba 192 Gene3D G3DSA:3.40.50.300 3 166 5.2E-52 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04035 ee2e4ccf9682b9570b796cac29f8b0ba 192 ProSitePatterns PS01128 Shikimate kinase signature. 56 81 - T 26-04-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS04035 ee2e4ccf9682b9570b796cac29f8b0ba 192 PANTHER PTHR21087 3 166 4.6E-56 T 26-04-2016 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 SUPERFAMILY SSF54849 137 203 4.58E-24 T 26-04-2016 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 524 3.9E-97 T 26-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 SUPERFAMILY SSF52029 184 376 4.49E-83 T 26-04-2016 IPR027409 GroEL-like apical domain RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 Gene3D G3DSA:3.50.7.10 189 368 9.1E-100 T 26-04-2016 IPR027409 GroEL-like apical domain RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 PRINTS PR00298 60kDa chaperonin signature 350 375 3.3E-74 T 26-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 PRINTS PR00298 60kDa chaperonin signature 398 419 3.3E-74 T 26-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 PRINTS PR00298 60kDa chaperonin signature 268 291 3.3E-74 T 26-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 PRINTS PR00298 60kDa chaperonin signature 83 110 3.3E-74 T 26-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 PRINTS PR00298 60kDa chaperonin signature 27 53 3.3E-74 T 26-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 SUPERFAMILY SSF48592 406 522 6.57E-78 T 26-04-2016 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 SUPERFAMILY SSF48592 7 134 6.57E-78 T 26-04-2016 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 26-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 Hamap MF_00600 60 kDa chaperonin [groL]. 2 546 41.805 T 26-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 Gene3D G3DSA:1.10.560.10 369 519 4.1E-40 T 26-04-2016 IPR027413 GroEL-like equatorial domain RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 PANTHER PTHR11353 2 548 4.4E-257 T 26-04-2016 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 528 7.0E-256 T 26-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RGE_RS21055 5c415ae4f541e0fa31b99cfd120a31e0 548 Gene3D G3DSA:1.10.560.10 4 188 8.7E-49 T 26-04-2016 IPR027413 GroEL-like equatorial domain RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 SUPERFAMILY SSF48452 206 237 1.29E-12 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 SUPERFAMILY SSF48452 269 427 1.29E-12 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 Gene3D G3DSA:1.25.40.10 370 586 1.0E-37 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 PANTHER PTHR23083:SF195 358 609 2.8E-37 T 26-04-2016 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 PANTHER PTHR23083:SF195 19 37 2.8E-37 T 26-04-2016 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 PANTHER PTHR23083:SF195 90 334 2.8E-37 T 26-04-2016 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 SMART SM00028 460 493 18.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 SMART SM00028 494 528 30.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 SMART SM00028 391 424 31.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 SMART SM00028 267 300 340.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 SMART SM00028 202 235 270.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 SMART SM00028 301 334 150.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 SMART SM00028 529 562 110.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 Gene3D G3DSA:1.25.40.10 199 369 2.0E-10 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 Gene3D G3DSA:1.25.40.10 105 158 2.0E-10 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 Pfam PF13432 Tetratricopeptide repeat 274 333 7.5E-4 T 26-04-2016 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 Pfam PF13429 Tetratricopeptide repeat 438 584 7.7E-10 T 26-04-2016 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 PANTHER PTHR23083 358 609 2.8E-37 T 26-04-2016 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 PANTHER PTHR23083 19 37 2.8E-37 T 26-04-2016 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 PANTHER PTHR23083 90 334 2.8E-37 T 26-04-2016 RGE_RS04290 1f20325f68fbe340eb079202d56be895 609 SUPERFAMILY SSF48452 432 592 7.11E-25 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS18050 90a5bdae48c8749e64c9c5e94c4c521d 614 PANTHER PTHR12815:SF12 75 611 1.5E-45 T 26-04-2016 RGE_RS18050 90a5bdae48c8749e64c9c5e94c4c521d 614 Gene3D G3DSA:2.40.160.50 443 613 2.7E-19 T 26-04-2016 RGE_RS18050 90a5bdae48c8749e64c9c5e94c4c521d 614 Pfam PF01103 Surface antigen 412 612 9.9E-34 T 26-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 RGE_RS18050 90a5bdae48c8749e64c9c5e94c4c521d 614 PANTHER PTHR12815 75 611 1.5E-45 T 26-04-2016 RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 2.6E-9 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.6E-9 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.6E-9 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 3.4E-34 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 3.4E-34 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 3.4E-34 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 3.4E-34 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.4E-34 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 3.4E-34 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 PANTHER PTHR24322 156 187 3.4E-49 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 PANTHER PTHR24322 12 140 3.4E-49 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 187 0.0012 T 26-04-2016 RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 Gene3D G3DSA:3.40.50.720 2 247 3.3E-73 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 SUPERFAMILY SSF51735 1 247 6.57E-69 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04765 069963eedb5a10a6154ebf8adefe3711 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 247 1.2E-54 T 26-04-2016 RGE_RS21795 a99ee02dee431150c8bde44463bc2766 237 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 112 129 4.2E-5 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS21795 a99ee02dee431150c8bde44463bc2766 237 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 208 228 4.2E-5 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS21795 a99ee02dee431150c8bde44463bc2766 237 Pfam PF00072 Response regulator receiver domain 4 114 9.7E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS21795 a99ee02dee431150c8bde44463bc2766 237 PANTHER PTHR32071:SF17 4 118 8.4E-38 T 26-04-2016 RGE_RS21795 a99ee02dee431150c8bde44463bc2766 237 SUPERFAMILY SSF52172 1 118 8.54E-38 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS21795 a99ee02dee431150c8bde44463bc2766 237 PANTHER PTHR32071 4 118 8.4E-38 T 26-04-2016 RGE_RS21795 a99ee02dee431150c8bde44463bc2766 237 Gene3D G3DSA:3.40.50.2300 1 120 1.1E-34 T 26-04-2016 RGE_RS21795 a99ee02dee431150c8bde44463bc2766 237 SMART SM00448 2 114 1.2E-33 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS21795 a99ee02dee431150c8bde44463bc2766 237 Gene3D G3DSA:1.10.10.60 180 227 1.3E-8 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS21795 a99ee02dee431150c8bde44463bc2766 237 SUPERFAMILY SSF46689 167 227 2.12E-14 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS21795 a99ee02dee431150c8bde44463bc2766 237 Pfam PF02954 Bacterial regulatory protein, Fis family 186 225 1.4E-5 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS22685 2930790bbe6d7747cd8363313dd7eb17 262 PANTHER PTHR13832 10 257 7.7E-58 T 26-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 RGE_RS22685 2930790bbe6d7747cd8363313dd7eb17 262 SUPERFAMILY SSF81606 2 246 1.96E-62 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS22685 2930790bbe6d7747cd8363313dd7eb17 262 SMART SM00332 1 244 1.2E-18 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS22685 2930790bbe6d7747cd8363313dd7eb17 262 PANTHER PTHR13832:SF278 10 257 7.7E-58 T 26-04-2016 RGE_RS22685 2930790bbe6d7747cd8363313dd7eb17 262 SMART SM00331 9 246 1.4E-30 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS22685 2930790bbe6d7747cd8363313dd7eb17 262 Pfam PF13672 Protein phosphatase 2C 14 207 1.0E-17 T 26-04-2016 RGE_RS22685 2930790bbe6d7747cd8363313dd7eb17 262 Gene3D G3DSA:3.60.40.10 3 246 2.6E-67 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS22185 448d1fe2ecf501250220dc79a5d0419d 452 PANTHER PTHR11785:SF337 6 418 5.5E-128 T 26-04-2016 RGE_RS22185 448d1fe2ecf501250220dc79a5d0419d 452 Pfam PF13520 Amino acid permease 10 415 4.8E-41 T 26-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RGE_RS22185 448d1fe2ecf501250220dc79a5d0419d 452 PANTHER PTHR11785 6 418 5.5E-128 T 26-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RGE_RS22185 448d1fe2ecf501250220dc79a5d0419d 452 TIGRFAM TIGR00908 2A0305: ethanolamine permease 3 427 2.9E-190 T 26-04-2016 IPR004757 Ethanolamine permease RGE_RS22185 448d1fe2ecf501250220dc79a5d0419d 452 PIRSF PIRSF006060 1 449 1.6E-70 T 26-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 PANTHER PTHR11528:SF44 2 621 0.0 T 26-04-2016 RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 Pfam PF00183 Hsp90 protein 216 620 3.6E-130 T 26-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 Hamap MF_00505 Chaperone protein HtpG [htpG]. 1 621 32.331 T 26-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 PRINTS PR00775 90kDa heat shock protein signature 74 91 8.1E-59 T 26-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 PRINTS PR00775 90kDa heat shock protein signature 189 207 8.1E-59 T 26-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 PRINTS PR00775 90kDa heat shock protein signature 25 47 8.1E-59 T 26-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 PRINTS PR00775 90kDa heat shock protein signature 4 24 8.1E-59 T 26-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 PRINTS PR00775 90kDa heat shock protein signature 92 109 8.1E-59 T 26-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 PRINTS PR00775 90kDa heat shock protein signature 171 188 8.1E-59 T 26-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 PRINTS PR00775 90kDa heat shock protein signature 119 141 8.1E-59 T 26-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 SUPERFAMILY SSF55874 4 214 1.07E-64 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 SUPERFAMILY SSF110942 511 620 1.83E-34 T 26-04-2016 RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 24 33 - T 26-04-2016 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 SMART SM00387 26 183 1.2E-5 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 Gene3D G3DSA:3.30.565.10 4 240 5.2E-81 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 181 6.8E-14 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 PANTHER PTHR11528 2 621 0.0 T 26-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 PIRSF PIRSF002583 1 622 9.0E-214 T 26-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RGE_RS03695 7d3adffd73659a157b694d0f447ab82b 622 SUPERFAMILY SSF54211 233 485 5.76E-95 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS15225 1d012297943624aff1127ee7c29db039 522 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 516 2.7E-242 T 26-04-2016 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0016651|GO:0050660|GO:0051287|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 Gene3D G3DSA:3.50.50.60 209 328 4.4E-23 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 265 275 1.4E-65 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 352 376 1.4E-65 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 404 420 1.4E-65 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 477 495 1.4E-65 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 443 464 1.4E-65 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 260 1.4E-65 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 213 235 1.4E-65 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 315 323 1.4E-65 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 337 349 1.4E-65 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 344 364 - T 26-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 SUPERFAMILY SSF52833 1 101 3.58E-28 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PIRSF PIRSF000238 1 520 9.9E-256 T 26-04-2016 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0016651|GO:0050660|GO:0051287|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 Pfam PF13192 Thioredoxin domain 124 192 1.2E-5 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS15225 1d012297943624aff1127ee7c29db039 522 Gene3D G3DSA:3.40.30.10 102 195 2.7E-33 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 356 374 1.0E-39 T 26-04-2016 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 441 457 1.0E-39 T 26-04-2016 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 233 1.0E-39 T 26-04-2016 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 314 332 1.0E-39 T 26-04-2016 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 467 489 1.0E-39 T 26-04-2016 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 Gene3D G3DSA:3.40.30.10 1 93 4.6E-32 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PANTHER PTHR22912 198 513 3.7E-191 T 26-04-2016 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 Gene3D G3DSA:3.50.50.60 329 442 1.9E-32 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 SUPERFAMILY SSF52833 103 196 3.04E-22 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS15225 1d012297943624aff1127ee7c29db039 522 SUPERFAMILY SSF51905 201 514 4.59E-52 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 PANTHER PTHR22912:SF107 198 513 3.7E-191 T 26-04-2016 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 Gene3D G3DSA:3.50.50.60 443 514 5.2E-12 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15225 1d012297943624aff1127ee7c29db039 522 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 212 502 6.8E-46 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15310 965e26307338d082c976b4405b554298 372 Pfam PF00266 Aminotransferase class-V 37 315 6.5E-20 T 26-04-2016 IPR000192 Aminotransferase class V domain RGE_RS15310 965e26307338d082c976b4405b554298 372 PIRSF PIRSF000524 1 372 2.9E-56 T 26-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RGE_RS15310 965e26307338d082c976b4405b554298 372 SUPERFAMILY SSF53383 9 368 1.24E-79 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS15310 965e26307338d082c976b4405b554298 372 Gene3D G3DSA:3.40.640.10 25 254 7.8E-45 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS15310 965e26307338d082c976b4405b554298 372 Gene3D G3DSA:3.90.1150.10 255 360 1.9E-39 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS15310 965e26307338d082c976b4405b554298 372 PANTHER PTHR21152:SF21 6 369 1.8E-111 T 26-04-2016 RGE_RS15310 965e26307338d082c976b4405b554298 372 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 371 191.11 T 26-04-2016 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RGE_RS15310 965e26307338d082c976b4405b554298 372 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 6 364 5.5E-143 T 26-04-2016 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RGE_RS15310 965e26307338d082c976b4405b554298 372 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 9 361 1.9E-137 T 26-04-2016 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RGE_RS15310 965e26307338d082c976b4405b554298 372 PANTHER PTHR21152 6 369 1.8E-111 T 26-04-2016 RGE_RS21080 3c6cd27abcef437a374eb7bed73ecf3b 208 PANTHER PTHR36964 1 204 1.3E-50 T 26-04-2016 RGE_RS21080 3c6cd27abcef437a374eb7bed73ecf3b 208 Hamap MF_01207 Sulfoxide reductase heme-binding subunit YedZ [yedZ]. 5 204 25.052 T 26-04-2016 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 RGE_RS21080 3c6cd27abcef437a374eb7bed73ecf3b 208 Pfam PF01794 Ferric reductase like transmembrane component 57 162 5.1E-14 T 26-04-2016 IPR013130 Ferric reductase transmembrane component-like domain RGE_RS06220 004d2f64957a0fd2086304e750588022 176 Pfam PF11684 Protein of unknown function (DUF2380) 27 163 1.1E-46 T 26-04-2016 IPR021698 Protein of unknown function DUF2380 RGE_RS21100 747efecac247c98787b78a2e1ba0492a 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 319 1.2E-72 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS21100 747efecac247c98787b78a2e1ba0492a 324 PANTHER PTHR30349 5 283 3.1E-71 T 26-04-2016 RGE_RS21100 747efecac247c98787b78a2e1ba0492a 324 PANTHER PTHR30349:SF1 5 283 3.1E-71 T 26-04-2016 RGE_RS21100 747efecac247c98787b78a2e1ba0492a 324 SUPERFAMILY SSF53850 112 284 2.28E-12 T 26-04-2016 RGE_RS21100 747efecac247c98787b78a2e1ba0492a 324 PIRSF PIRSF017082 3 323 9.3E-65 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS21300 9aaf0d6c6f40a89aeb51511448c9201d 512 Gene3D G3DSA:3.60.110.10 224 474 6.6E-22 T 26-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RGE_RS21300 9aaf0d6c6f40a89aeb51511448c9201d 512 Pfam PF00795 Carbon-nitrogen hydrolase 251 473 9.8E-19 T 26-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RGE_RS21300 9aaf0d6c6f40a89aeb51511448c9201d 512 SUPERFAMILY SSF56317 225 484 3.27E-33 T 26-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RGE_RS21300 9aaf0d6c6f40a89aeb51511448c9201d 512 PANTHER PTHR38686 9 512 3.3E-62 T 26-04-2016 RGE_RS21300 9aaf0d6c6f40a89aeb51511448c9201d 512 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 69 453 5.4E-80 T 26-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 RGE_RS21300 9aaf0d6c6f40a89aeb51511448c9201d 512 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 16 497 20.076 T 26-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 RGE_RS08715 c06e5c7b00471d0ba1ddc89f117d5eee 517 SUPERFAMILY SSF52540 2 228 1.01E-51 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08715 c06e5c7b00471d0ba1ddc89f117d5eee 517 SMART SM00382 279 480 0.0024 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS08715 c06e5c7b00471d0ba1ddc89f117d5eee 517 SMART SM00382 30 219 1.0E-12 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS08715 c06e5c7b00471d0ba1ddc89f117d5eee 517 Pfam PF00005 ABC transporter 271 431 1.1E-14 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS08715 c06e5c7b00471d0ba1ddc89f117d5eee 517 Pfam PF00005 ABC transporter 21 171 7.5E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS08715 c06e5c7b00471d0ba1ddc89f117d5eee 517 SUPERFAMILY SSF52540 265 491 3.55E-39 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08715 c06e5c7b00471d0ba1ddc89f117d5eee 517 PANTHER PTHR24220:SF308 7 386 3.3E-137 T 26-04-2016 RGE_RS08715 c06e5c7b00471d0ba1ddc89f117d5eee 517 PANTHER PTHR24220 7 386 3.3E-137 T 26-04-2016 RGE_RS08715 c06e5c7b00471d0ba1ddc89f117d5eee 517 ProSitePatterns PS00211 ABC transporters family signature. 404 418 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS08715 c06e5c7b00471d0ba1ddc89f117d5eee 517 Gene3D G3DSA:3.40.50.300 267 494 3.7E-42 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08715 c06e5c7b00471d0ba1ddc89f117d5eee 517 Gene3D G3DSA:3.40.50.300 3 236 4.1E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19275 cab4e28229f8c5585a3226fa61f8f2ad 523 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 229 519 2.8E-127 T 26-04-2016 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type RGE_RS19275 cab4e28229f8c5585a3226fa61f8f2ad 523 PANTHER PTHR11795:SF349 86 522 1.7E-151 T 26-04-2016 RGE_RS19275 cab4e28229f8c5585a3226fa61f8f2ad 523 Pfam PF02653 Branched-chain amino acid transport system / permease component 230 504 2.5E-47 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS19275 cab4e28229f8c5585a3226fa61f8f2ad 523 PANTHER PTHR11795 86 522 1.7E-151 T 26-04-2016 RGE_RS03980 daff7d065b6ad839e64a78d7e6f1b33f 326 PANTHER PTHR24220:SF535 7 319 1.1E-138 T 26-04-2016 RGE_RS03980 daff7d065b6ad839e64a78d7e6f1b33f 326 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 299 3.3E-16 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS03980 daff7d065b6ad839e64a78d7e6f1b33f 326 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 318 7.1E-23 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS03980 daff7d065b6ad839e64a78d7e6f1b33f 326 Pfam PF00005 ABC transporter 25 183 3.8E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS03980 daff7d065b6ad839e64a78d7e6f1b33f 326 SMART SM00382 34 241 1.5E-13 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS03980 daff7d065b6ad839e64a78d7e6f1b33f 326 PANTHER PTHR24220 7 319 1.1E-138 T 26-04-2016 RGE_RS03980 daff7d065b6ad839e64a78d7e6f1b33f 326 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS03980 daff7d065b6ad839e64a78d7e6f1b33f 326 SUPERFAMILY SSF52540 5 253 1.3E-65 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03980 daff7d065b6ad839e64a78d7e6f1b33f 326 Gene3D G3DSA:3.40.50.300 4 257 2.0E-76 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03420 28ce9d52259cffef072614e1685dcc8d 929 PANTHER PTHR30069:SF7 85 783 1.2E-57 T 26-04-2016 RGE_RS03420 28ce9d52259cffef072614e1685dcc8d 929 PANTHER PTHR30069 85 783 1.2E-57 T 26-04-2016 RGE_RS03420 28ce9d52259cffef072614e1685dcc8d 929 Pfam PF07715 TonB-dependent Receptor Plug Domain 110 221 4.2E-18 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS03420 28ce9d52259cffef072614e1685dcc8d 929 SUPERFAMILY SSF56935 90 279 5.8E-78 T 26-04-2016 RGE_RS03420 28ce9d52259cffef072614e1685dcc8d 929 SUPERFAMILY SSF56935 754 929 5.8E-78 T 26-04-2016 RGE_RS03420 28ce9d52259cffef072614e1685dcc8d 929 SUPERFAMILY SSF56935 678 724 5.8E-78 T 26-04-2016 RGE_RS03420 28ce9d52259cffef072614e1685dcc8d 929 SUPERFAMILY SSF56935 362 645 5.8E-78 T 26-04-2016 RGE_RS03420 28ce9d52259cffef072614e1685dcc8d 929 Pfam PF00593 TonB dependent receptor 617 926 2.5E-21 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS03420 28ce9d52259cffef072614e1685dcc8d 929 Gene3D G3DSA:2.40.170.20 222 291 8.9E-65 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS03420 28ce9d52259cffef072614e1685dcc8d 929 Gene3D G3DSA:2.40.170.20 361 928 8.9E-65 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS03420 28ce9d52259cffef072614e1685dcc8d 929 Gene3D G3DSA:2.170.130.10 97 221 8.4E-28 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS20215 65a7aab1fcc0b6038d800fb90ef7932e 386 PANTHER PTHR30244:SF3 1 386 4.8E-143 T 26-04-2016 RGE_RS20215 65a7aab1fcc0b6038d800fb90ef7932e 386 SUPERFAMILY SSF53383 5 384 2.72E-116 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS20215 65a7aab1fcc0b6038d800fb90ef7932e 386 Gene3D G3DSA:3.90.1150.10 261 384 7.1E-40 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS20215 65a7aab1fcc0b6038d800fb90ef7932e 386 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 381 6.0E-133 T 26-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RGE_RS20215 65a7aab1fcc0b6038d800fb90ef7932e 386 PIRSF PIRSF000390 1 386 3.2E-110 T 26-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RGE_RS20215 65a7aab1fcc0b6038d800fb90ef7932e 386 PANTHER PTHR30244 1 386 4.8E-143 T 26-04-2016 RGE_RS20215 65a7aab1fcc0b6038d800fb90ef7932e 386 Gene3D G3DSA:3.40.640.10 6 258 5.6E-87 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS19665 a7b666bae49dbed9486f709f04e40760 284 PANTHER PTHR42280 2 275 1.6E-21 T 26-04-2016 RGE_RS19665 a7b666bae49dbed9486f709f04e40760 284 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 4 270 3.4E-62 T 26-04-2016 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 RGE_RS19665 a7b666bae49dbed9486f709f04e40760 284 PANTHER PTHR42280:SF1 2 275 1.6E-21 T 26-04-2016 RGE_RS05195 bedabe7c94d6230216ea3d3b0604a5f8 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 281 1.2E-20 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05195 bedabe7c94d6230216ea3d3b0604a5f8 285 SUPERFAMILY SSF161098 4 282 7.1E-59 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05195 bedabe7c94d6230216ea3d3b0604a5f8 285 PANTHER PTHR32243 1 283 5.0E-119 T 26-04-2016 RGE_RS05195 bedabe7c94d6230216ea3d3b0604a5f8 285 Gene3D G3DSA:1.10.3720.10 4 274 1.6E-51 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05195 bedabe7c94d6230216ea3d3b0604a5f8 285 PANTHER PTHR32243:SF31 1 283 5.0E-119 T 26-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 SUPERFAMILY SSF52317 1 232 1.53E-54 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 Gene3D G3DSA:3.40.50.880 2 218 8.2E-55 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 PANTHER PTHR11922:SF2 1 531 7.2E-273 T 26-04-2016 RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 PANTHER PTHR11922 1 531 7.2E-273 T 26-04-2016 RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 Gene3D G3DSA:3.40.50.620 219 402 1.4E-57 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 2 534 53.713 T 26-04-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 Pfam PF00958 GMP synthase C terminal domain 445 533 6.5E-42 T 26-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 SUPERFAMILY SSF54810 407 534 5.75E-47 T 26-04-2016 RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 Gene3D G3DSA:3.30.300.10 403 534 1.1E-52 T 26-04-2016 RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 209 534 8.6E-142 T 26-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 Pfam PF00117 Glutamine amidotransferase class-I 7 195 9.0E-33 T 26-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 SUPERFAMILY SSF52402 192 422 1.43E-56 T 26-04-2016 RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 Pfam PF02540 NAD synthase 218 249 1.3E-6 T 26-04-2016 IPR022310 NAD/GMP synthase RGE_RS15060 7c3df78cc9cde60e7e746fe6c3545566 534 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 5 199 4.9E-68 T 26-04-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 444 6.3E-13 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 302 5.6E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 Gene3D G3DSA:3.30.565.10 313 454 2.5E-29 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 SUPERFAMILY SSF55874 313 454 1.01E-27 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 Pfam PF08521 Two-component sensor kinase N-terminal 22 159 9.7E-30 T 26-04-2016 IPR013727 Two-component sensor kinase, N-terminal RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 Gene3D G3DSA:1.10.287.130 232 299 6.0E-7 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 SMART SM00387 351 458 2.9E-27 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 PANTHER PTHR24423:SF474 7 24 4.3E-51 T 26-04-2016 RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 PANTHER PTHR24423:SF474 180 454 4.3E-51 T 26-04-2016 RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 SMART SM00388 239 304 3.3E-9 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 SUPERFAMILY SSF47384 223 302 2.75E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 2.4E-6 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 2.4E-6 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 PANTHER PTHR24423 7 24 4.3E-51 T 26-04-2016 RGE_RS08510 962d610b1491e77f942f276f64d4938d 461 PANTHER PTHR24423 180 454 4.3E-51 T 26-04-2016 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 Gene3D G3DSA:2.40.30.10 293 392 9.8E-31 T 26-04-2016 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 Gene3D G3DSA:3.40.50.300 4 283 7.5E-95 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 PRINTS PR00315 GTP-binding elongation factor signature 56 64 2.2E-17 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 PRINTS PR00315 GTP-binding elongation factor signature 10 23 2.2E-17 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 PRINTS PR00315 GTP-binding elongation factor signature 128 137 2.2E-17 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 PRINTS PR00315 GTP-binding elongation factor signature 76 86 2.2E-17 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 PRINTS PR00315 GTP-binding elongation factor signature 92 103 2.2E-17 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 Hamap MF_00054_B Elongation factor G [fusA]. 4 674 91.957 T 26-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 SUPERFAMILY SSF54980 389 466 3.6E-20 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 Pfam PF00009 Elongation factor Tu GTP binding domain 7 278 3.4E-64 T 26-04-2016 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 SMART SM00889 467 585 6.1E-57 T 26-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 SMART SM00838 587 674 2.6E-41 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 TIGRFAM TIGR00484 EF-G: translation elongation factor G 6 667 6.5E-261 T 26-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 176 2.2E-27 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 Pfam PF00679 Elongation factor G C-terminus 587 670 1.6E-24 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 Pfam PF03144 Elongation factor Tu domain 2 313 377 1.4E-17 T 26-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 SUPERFAMILY SSF54980 587 669 2.06E-23 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 PANTHER PTHR23115 1 175 2.3E-280 T 26-04-2016 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 PANTHER PTHR23115 252 674 2.3E-280 T 26-04-2016 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 SUPERFAMILY SSF50447 248 388 2.65E-30 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 PANTHER PTHR23115:SF66 1 175 2.3E-280 T 26-04-2016 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 PANTHER PTHR23115:SF66 252 674 2.3E-280 T 26-04-2016 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 Pfam PF03764 Elongation factor G, domain IV 466 584 2.0E-37 T 26-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 Pfam PF14492 Elongation Factor G, domain II 391 464 9.6E-26 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 Gene3D G3DSA:3.30.70.870 393 466 3.7E-27 T 26-04-2016 RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 Gene3D G3DSA:3.30.70.240 587 668 9.8E-27 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 SUPERFAMILY SSF54211 466 586 1.69E-38 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 49 64 - T 26-04-2016 IPR031157 Tr-type G domain, conserved site RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 Gene3D G3DSA:3.30.230.10 471 586 2.0E-45 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS02670 2d36815351a41ddeaeb5c5e149e5f628 676 SUPERFAMILY SSF52540 6 278 1.42E-96 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17095 0f0a9c630cc1eb36ab33565eefd650e0 224 PANTHER PTHR11579 1 177 4.4E-28 T 26-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RGE_RS17095 0f0a9c630cc1eb36ab33565eefd650e0 224 PANTHER PTHR11579:SF0 1 177 4.4E-28 T 26-04-2016 RGE_RS17095 0f0a9c630cc1eb36ab33565eefd650e0 224 SUPERFAMILY SSF53335 2 184 9.47E-35 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS17095 0f0a9c630cc1eb36ab33565eefd650e0 224 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 10 183 9.7E-31 T 26-04-2016 RGE_RS17095 0f0a9c630cc1eb36ab33565eefd650e0 224 Gene3D G3DSA:3.40.50.150 10 219 3.2E-45 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS00540 e5a4dca5258b13f8e2fe5326ce4f9001 431 Gene3D G3DSA:3.30.420.40 110 194 2.0E-28 T 26-04-2016 RGE_RS00540 e5a4dca5258b13f8e2fe5326ce4f9001 431 Gene3D G3DSA:3.30.420.40 9 76 2.0E-28 T 26-04-2016 RGE_RS00540 e5a4dca5258b13f8e2fe5326ce4f9001 431 Pfam PF00012 Hsp70 protein 91 235 7.4E-10 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS00540 e5a4dca5258b13f8e2fe5326ce4f9001 431 SUPERFAMILY SSF53067 184 251 2.12E-28 T 26-04-2016 RGE_RS00540 e5a4dca5258b13f8e2fe5326ce4f9001 431 SUPERFAMILY SSF53067 306 427 2.12E-28 T 26-04-2016 RGE_RS00540 e5a4dca5258b13f8e2fe5326ce4f9001 431 PANTHER PTHR19375:SF182 5 245 9.4E-73 T 26-04-2016 RGE_RS00540 e5a4dca5258b13f8e2fe5326ce4f9001 431 PANTHER PTHR19375:SF182 299 424 9.4E-73 T 26-04-2016 RGE_RS00540 e5a4dca5258b13f8e2fe5326ce4f9001 431 PANTHER PTHR19375 5 245 9.4E-73 T 26-04-2016 RGE_RS00540 e5a4dca5258b13f8e2fe5326ce4f9001 431 PANTHER PTHR19375 299 424 9.4E-73 T 26-04-2016 RGE_RS00540 e5a4dca5258b13f8e2fe5326ce4f9001 431 SUPERFAMILY SSF53067 9 179 1.26E-29 T 26-04-2016 RGE_RS00540 e5a4dca5258b13f8e2fe5326ce4f9001 431 Gene3D G3DSA:3.30.420.40 317 408 2.0E-12 T 26-04-2016 RGE_RS00540 e5a4dca5258b13f8e2fe5326ce4f9001 431 Gene3D G3DSA:3.30.420.40 195 249 2.0E-12 T 26-04-2016 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Pfam PF02743 Cache domain 28 263 8.7E-15 T 26-04-2016 IPR033479 Double Cache domain 1 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 PANTHER PTHR24423:SF486 10 40 6.6E-169 T 26-04-2016 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Pfam PF01627 Hpt domain 897 976 5.2E-8 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 314 439 3.6E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Gene3D G3DSA:1.20.120.160 875 977 5.9E-14 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 SMART SM00388 474 539 7.9E-23 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Gene3D G3DSA:3.30.450.20 162 275 2.8E-9 T 26-04-2016 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Gene3D G3DSA:1.10.287.130 469 535 9.2E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 SUPERFAMILY SSF55785 309 434 5.41E-15 T 26-04-2016 IPR000014 PAS domain RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 SUPERFAMILY SSF55874 528 696 1.57E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 SMART SM00448 726 839 2.4E-33 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Pfam PF00072 Response regulator receiver domain 728 837 1.0E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 SUPERFAMILY SSF52172 722 850 8.97E-38 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 586 696 1.2E-22 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Gene3D G3DSA:3.30.450.20 76 161 9.1E-12 T 26-04-2016 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 SMART SM00091 318 385 0.0051 T 26-04-2016 IPR000014 PAS domain RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 SUPERFAMILY SSF47384 459 540 4.12E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Pfam PF00512 His Kinase A (phospho-acceptor) domain 474 539 3.9E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Gene3D G3DSA:3.30.450.20 313 434 6.4E-17 T 26-04-2016 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 PANTHER PTHR24423:SF486 316 451 6.6E-169 T 26-04-2016 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 PANTHER PTHR24423:SF486 470 854 6.6E-169 T 26-04-2016 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 PANTHER PTHR24423 316 451 6.6E-169 T 26-04-2016 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 PANTHER PTHR24423 10 40 6.6E-169 T 26-04-2016 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 PANTHER PTHR24423 470 854 6.6E-169 T 26-04-2016 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 SUPERFAMILY SSF47226 822 835 4.32E-18 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 SUPERFAMILY SSF47226 877 974 4.32E-18 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Gene3D G3DSA:3.30.565.10 540 696 1.7E-39 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Pfam PF08448 PAS fold 324 437 2.5E-7 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 Gene3D G3DSA:3.40.50.2300 721 847 2.0E-39 T 26-04-2016 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 SMART SM00387 585 701 1.6E-32 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 PRINTS PR00344 Bacterial sensor protein C-terminal signature 626 640 1.1E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 PRINTS PR00344 Bacterial sensor protein C-terminal signature 685 698 1.1E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 PRINTS PR00344 Bacterial sensor protein C-terminal signature 644 654 1.1E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11015 40608565748c18fbd6cba5eef8f24ac7 989 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 679 1.1E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS05190 8bb57f33a488bdc3da24307e46a01203 353 SUPERFAMILY SSF52540 4 246 1.96E-84 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05190 8bb57f33a488bdc3da24307e46a01203 353 Gene3D G3DSA:2.40.50.140 281 335 2.7E-12 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS05190 8bb57f33a488bdc3da24307e46a01203 353 SUPERFAMILY SSF50331 240 351 1.02E-25 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS05190 8bb57f33a488bdc3da24307e46a01203 353 Gene3D G3DSA:2.40.50.100 243 280 3.3E-4 T 26-04-2016 RGE_RS05190 8bb57f33a488bdc3da24307e46a01203 353 Gene3D G3DSA:2.40.50.100 338 352 3.3E-4 T 26-04-2016 RGE_RS05190 8bb57f33a488bdc3da24307e46a01203 353 SMART SM00382 32 223 4.7E-13 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS05190 8bb57f33a488bdc3da24307e46a01203 353 PANTHER PTHR24220:SF151 5 287 1.4E-157 T 26-04-2016 RGE_RS05190 8bb57f33a488bdc3da24307e46a01203 353 Gene3D G3DSA:3.40.50.300 3 238 3.2E-75 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05190 8bb57f33a488bdc3da24307e46a01203 353 Pfam PF00005 ABC transporter 24 165 1.6E-30 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS05190 8bb57f33a488bdc3da24307e46a01203 353 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS05190 8bb57f33a488bdc3da24307e46a01203 353 Pfam PF08402 TOBE domain 276 344 6.1E-5 T 26-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RGE_RS05190 8bb57f33a488bdc3da24307e46a01203 353 PANTHER PTHR24220 5 287 1.4E-157 T 26-04-2016 RGE_RS06980 cf1354c437bb917db75a26ae1d14b673 158 Gene3D G3DSA:2.60.120.10 3 144 3.1E-41 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS06980 cf1354c437bb917db75a26ae1d14b673 158 SUPERFAMILY SSF51182 4 142 6.23E-40 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS06980 cf1354c437bb917db75a26ae1d14b673 158 Pfam PF06172 Cupin superfamily (DUF985) 9 136 6.3E-38 T 26-04-2016 IPR009327 Cupin domain of unknown function DUF985 RGE_RS06980 cf1354c437bb917db75a26ae1d14b673 158 PANTHER PTHR33387 1 158 3.2E-32 T 26-04-2016 RGE_RS02425 4ab8511463e8e0b1e261ffb0b7570596 675 Gene3D G3DSA:1.10.530.10 495 650 2.8E-45 T 26-04-2016 RGE_RS02425 4ab8511463e8e0b1e261ffb0b7570596 675 Pfam PF01464 Transglycosylase SLT domain 508 609 2.6E-22 T 26-04-2016 IPR008258 Transglycosylase SLT domain 1 RGE_RS02425 4ab8511463e8e0b1e261ffb0b7570596 675 SUPERFAMILY SSF48435 33 497 3.27E-88 T 26-04-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 RGE_RS02425 4ab8511463e8e0b1e261ffb0b7570596 675 Pfam PF14718 Soluble lytic murein transglycosylase L domain 427 487 4.5E-7 T 26-04-2016 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 RGE_RS02425 4ab8511463e8e0b1e261ffb0b7570596 675 SUPERFAMILY SSF53955 501 656 4.55E-45 T 26-04-2016 IPR023346 Lysozyme-like domain RGE_RS02425 4ab8511463e8e0b1e261ffb0b7570596 675 PANTHER PTHR21666 483 650 3.3E-40 T 26-04-2016 RGE_RS02425 4ab8511463e8e0b1e261ffb0b7570596 675 Gene3D G3DSA:1.10.1240.20 425 483 5.1E-6 T 26-04-2016 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 RGE_RS02425 4ab8511463e8e0b1e261ffb0b7570596 675 Gene3D G3DSA:1.25.20.10 34 407 3.7E-73 T 26-04-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 RGE_RS12980 defee40ddaf9d649efa7adbe2fb95e92 468 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 267 278 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS12980 defee40ddaf9d649efa7adbe2fb95e92 468 Gene3D G3DSA:3.30.70.20 276 303 5.2E-4 T 26-04-2016 RGE_RS12980 defee40ddaf9d649efa7adbe2fb95e92 468 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 350 467 3.8E-21 T 26-04-2016 IPR032879 FixG, C-terminal immunoglobulin-like domain RGE_RS12980 defee40ddaf9d649efa7adbe2fb95e92 468 Gene3D G3DSA:2.60.40.10 350 468 2.0E-25 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS12980 defee40ddaf9d649efa7adbe2fb95e92 468 PANTHER PTHR24960 20 388 5.6E-106 T 26-04-2016 RGE_RS12980 defee40ddaf9d649efa7adbe2fb95e92 468 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 37 466 5.0E-134 T 26-04-2016 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021 RGE_RS12980 defee40ddaf9d649efa7adbe2fb95e92 468 Pfam PF13746 4Fe-4S dicluster domain 214 320 1.3E-39 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS12980 defee40ddaf9d649efa7adbe2fb95e92 468 Gene3D G3DSA:1.10.1060.10 218 275 2.0E-7 T 26-04-2016 RGE_RS12980 defee40ddaf9d649efa7adbe2fb95e92 468 SUPERFAMILY SSF54862 191 329 4.05E-27 T 26-04-2016 RGE_RS12980 defee40ddaf9d649efa7adbe2fb95e92 468 SUPERFAMILY SSF54862 101 146 4.05E-27 T 26-04-2016 RGE_RS12980 defee40ddaf9d649efa7adbe2fb95e92 468 PANTHER PTHR24960:SF45 20 388 5.6E-106 T 26-04-2016 RGE_RS12980 defee40ddaf9d649efa7adbe2fb95e92 468 Pfam PF12801 4Fe-4S binding domain 93 130 3.4E-9 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 SUPERFAMILY SSF51735 189 423 4.93E-74 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 SMART SM00839 191 421 8.0E-98 T 26-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 Gene3D G3DSA:3.40.192.10 47 187 9.1E-58 T 26-04-2016 RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 PANTHER PTHR11606 20 422 1.4E-171 T 26-04-2016 RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 SUPERFAMILY SSF53223 6 191 7.36E-69 T 26-04-2016 RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 43 171 2.0E-55 T 26-04-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 222 242 2.7E-32 T 26-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 100 114 2.7E-32 T 26-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 180 202 2.7E-32 T 26-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 349 360 2.7E-32 T 26-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 189 421 3.5E-71 T 26-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 PIRSF PIRSF000185 13 424 9.1E-159 T 26-04-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 Gene3D G3DSA:3.40.50.720 189 423 1.4E-82 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00425 30a4ec04ef475a71b45077fb72c84e0b 424 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 108 121 - T 26-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 ProSitePatterns PS00211 ABC transporters family signature. 444 458 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 SUPERFAMILY SSF52540 4 254 1.17E-62 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 SMART SM00382 34 232 8.3E-13 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 SMART SM00382 328 521 1.3E-14 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 PANTHER PTHR24220:SF574 287 429 3.1E-155 T 26-04-2016 RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 PANTHER PTHR24220:SF574 6 261 3.1E-155 T 26-04-2016 RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 SUPERFAMILY SSF52540 294 543 1.81E-71 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 PANTHER PTHR24220 287 429 3.1E-155 T 26-04-2016 RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 PANTHER PTHR24220 6 261 3.1E-155 T 26-04-2016 RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 265 0.0024 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 523 552 0.087 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 Pfam PF00005 ABC transporter 26 182 4.5E-27 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 Pfam PF00005 ABC transporter 320 471 2.9E-31 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 Gene3D G3DSA:3.40.50.300 294 545 1.7E-78 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22850 01ff312ca70bd0789beb4b5d16e66e73 555 Gene3D G3DSA:3.40.50.300 3 255 9.4E-71 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08545 1c749679dcdf3b36161f434378183171 415 Gene3D G3DSA:1.10.3150.10 211 362 2.0E-28 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS08545 1c749679dcdf3b36161f434378183171 415 SUPERFAMILY SSF109604 212 408 4.71E-31 T 26-04-2016 RGE_RS08545 1c749679dcdf3b36161f434378183171 415 PANTHER PTHR33525 220 366 8.9E-22 T 26-04-2016 RGE_RS08545 1c749679dcdf3b36161f434378183171 415 Pfam PF08668 HDOD domain 214 334 2.2E-13 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS08545 1c749679dcdf3b36161f434378183171 415 PANTHER PTHR33525:SF4 220 366 8.9E-22 T 26-04-2016 RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 Pfam PF00270 DEAD/DEAH box helicase 600 757 1.1E-16 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 146 1076 0.0 T 26-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 26 1102 27.901 T 26-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 SUPERFAMILY SSF52540 778 985 5.78E-46 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 SUPERFAMILY SSF52540 518 778 2.44E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 Pfam PF03461 TRCF domain 1004 1095 8.3E-25 T 26-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 Gene3D G3DSA:3.30.2060.10 129 202 1.7E-12 T 26-04-2016 RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 SUPERFAMILY SSF141259 466 543 3.66E-24 T 26-04-2016 IPR003711 CarD-like/TRCF domain RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 Pfam PF02559 CarD-like/TRCF domain 475 570 3.5E-27 T 26-04-2016 IPR003711 CarD-like/TRCF domain RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 PANTHER PTHR14025 374 1136 0.0 T 26-04-2016 RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 SMART SM00490 821 905 7.3E-16 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 SUPERFAMILY SSF52540 346 459 2.44E-23 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 Pfam PF00271 Helicase conserved C-terminal domain 800 904 9.1E-18 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 PANTHER PTHR14025:SF21 374 1136 0.0 T 26-04-2016 RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 SMART SM01058 474 571 5.7E-50 T 26-04-2016 IPR003711 CarD-like/TRCF domain RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 SUPERFAMILY SSF143517 989 1139 1.02E-38 T 26-04-2016 RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 SUPERFAMILY SSF52540 8 335 5.31E-92 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 Gene3D G3DSA:3.40.50.300 788 951 1.7E-35 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 SMART SM00982 1003 1103 7.5E-44 T 26-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 SMART SM00487 595 785 1.9E-31 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS13090 5b116acd1c686a58d4b32506e4dbc335 1145 Gene3D G3DSA:3.40.50.300 588 781 1.8E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08155 02d39a496c77213388b07984be22fd70 277 Gene3D G3DSA:3.40.50.1820 5 269 5.8E-49 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS08155 02d39a496c77213388b07984be22fd70 277 Pfam PF12697 Alpha/beta hydrolase family 28 267 1.6E-19 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS08155 02d39a496c77213388b07984be22fd70 277 TIGRFAM TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein 5 269 4.1E-79 T 26-04-2016 IPR017497 Putative magnesium chelatase accessory protein KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00671 RGE_RS08155 02d39a496c77213388b07984be22fd70 277 PANTHER PTHR10992 155 269 2.0E-33 T 26-04-2016 RGE_RS08155 02d39a496c77213388b07984be22fd70 277 PANTHER PTHR10992 6 139 2.0E-33 T 26-04-2016 RGE_RS08155 02d39a496c77213388b07984be22fd70 277 SUPERFAMILY SSF53474 5 269 6.1E-49 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS08155 02d39a496c77213388b07984be22fd70 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 3.5E-5 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS08155 02d39a496c77213388b07984be22fd70 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 50 65 3.5E-5 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS08155 02d39a496c77213388b07984be22fd70 277 PRINTS PR00412 Epoxide hydrolase signature 250 272 2.9E-8 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS08155 02d39a496c77213388b07984be22fd70 277 PRINTS PR00412 Epoxide hydrolase signature 217 233 2.9E-8 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS08155 02d39a496c77213388b07984be22fd70 277 PRINTS PR00412 Epoxide hydrolase signature 95 108 2.9E-8 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS08155 02d39a496c77213388b07984be22fd70 277 PRINTS PR00412 Epoxide hydrolase signature 50 65 2.9E-8 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS04080 eaae4e9a76edff3d01d987b33189b3af 253 PANTHER PTHR30035 33 235 2.0E-55 T 26-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RGE_RS04080 eaae4e9a76edff3d01d987b33189b3af 253 PRINTS PR01805 VacJ lipoprotein signature 107 124 3.2E-24 T 26-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RGE_RS04080 eaae4e9a76edff3d01d987b33189b3af 253 PRINTS PR01805 VacJ lipoprotein signature 39 52 3.2E-24 T 26-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RGE_RS04080 eaae4e9a76edff3d01d987b33189b3af 253 PRINTS PR01805 VacJ lipoprotein signature 143 160 3.2E-24 T 26-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RGE_RS04080 eaae4e9a76edff3d01d987b33189b3af 253 PRINTS PR01805 VacJ lipoprotein signature 56 72 3.2E-24 T 26-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RGE_RS04080 eaae4e9a76edff3d01d987b33189b3af 253 PANTHER PTHR30035:SF3 33 235 2.0E-55 T 26-04-2016 RGE_RS04080 eaae4e9a76edff3d01d987b33189b3af 253 Pfam PF04333 MlaA lipoprotein 38 228 6.4E-71 T 26-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RGE_RS06795 ad59ed6e57f3a481858c5c9f0f46e5b4 103 Pfam PF06305 Protein of unknown function (DUF1049) 22 72 1.5E-13 T 26-04-2016 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 178 1.5E-30 T 26-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 Gene3D G3DSA:3.40.50.720 228 424 1.1E-43 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 PANTHER PTHR11374 2 426 7.0E-230 T 26-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 197 286 2.5E-23 T 26-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 SUPERFAMILY SSF52413 299 424 4.32E-26 T 26-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 3 407 3.7E-111 T 26-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 SUPERFAMILY SSF48179 197 288 3.91E-24 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 PANTHER PTHR11374:SF25 2 426 7.0E-230 T 26-04-2016 RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 SMART SM00984 313 413 1.4E-26 T 26-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 Gene3D G3DSA:3.40.50.720 2 218 2.8E-51 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 PIRSF PIRSF500136 1 426 2.1E-142 T 26-04-2016 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 314 412 1.6E-20 T 26-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 SUPERFAMILY SSF51735 3 186 4.49E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS02050 12e69d8880ec99009cd7435e35b20737 426 PIRSF PIRSF000124 2 426 2.6E-53 T 26-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RGE_RS16770 977ca137d222db92cb32fc949746d9cf 141 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 134 2.2E-22 T 26-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RGE_RS16770 977ca137d222db92cb32fc949746d9cf 141 PANTHER PTHR30558:SF3 1 134 7.8E-23 T 26-04-2016 RGE_RS16770 977ca137d222db92cb32fc949746d9cf 141 PANTHER PTHR30558 1 134 7.8E-23 T 26-04-2016 RGE_RS04005 bdf07c262f2d0431d045f2a5fa248cba 345 SUPERFAMILY SSF53067 30 164 1.9E-12 T 26-04-2016 RGE_RS04005 bdf07c262f2d0431d045f2a5fa248cba 345 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 2 343 8.7E-93 T 26-04-2016 IPR005883 Type IV pilus assembly protein PilM RGE_RS04005 bdf07c262f2d0431d045f2a5fa248cba 345 PANTHER PTHR32432:SF3 1 345 9.0E-65 T 26-04-2016 RGE_RS04005 bdf07c262f2d0431d045f2a5fa248cba 345 Pfam PF11104 Type IV pilus assembly protein PilM; 3 343 1.3E-144 T 26-04-2016 IPR005883 Type IV pilus assembly protein PilM RGE_RS04005 bdf07c262f2d0431d045f2a5fa248cba 345 SUPERFAMILY SSF53067 181 343 4.96E-24 T 26-04-2016 RGE_RS04005 bdf07c262f2d0431d045f2a5fa248cba 345 PANTHER PTHR32432 1 345 9.0E-65 T 26-04-2016 RGE_RS04005 bdf07c262f2d0431d045f2a5fa248cba 345 PIRSF PIRSF019169 1 344 5.6E-117 T 26-04-2016 IPR005883 Type IV pilus assembly protein PilM RGE_RS04005 bdf07c262f2d0431d045f2a5fa248cba 345 Gene3D G3DSA:3.30.420.40 186 302 1.8E-26 T 26-04-2016 RGE_RS04005 bdf07c262f2d0431d045f2a5fa248cba 345 Gene3D G3DSA:3.30.420.40 2 96 4.3E-4 T 26-04-2016 RGE_RS13650 823b8cb4e980cd02857b094295fbbdee 369 PANTHER PTHR21581:SF8 106 350 1.4E-86 T 26-04-2016 RGE_RS13650 823b8cb4e980cd02857b094295fbbdee 369 SUPERFAMILY SSF56601 113 351 2.69E-62 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS13650 823b8cb4e980cd02857b094295fbbdee 369 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 107 333 1.7E-61 T 26-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RGE_RS13650 823b8cb4e980cd02857b094295fbbdee 369 PANTHER PTHR21581 106 350 1.4E-86 T 26-04-2016 RGE_RS13650 823b8cb4e980cd02857b094295fbbdee 369 Gene3D G3DSA:3.40.710.10 108 351 1.1E-71 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS13650 823b8cb4e980cd02857b094295fbbdee 369 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 218 231 9.7E-12 T 26-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RGE_RS13650 823b8cb4e980cd02857b094295fbbdee 369 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 141 152 9.7E-12 T 26-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RGE_RS13650 823b8cb4e980cd02857b094295fbbdee 369 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 191 208 9.7E-12 T 26-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RGE_RS00130 92c68f256fe1ffe4cb3513cb32a192d7 496 Pfam PF00990 Diguanylate cyclase, GGDEF domain 122 277 9.3E-34 T 26-04-2016 IPR000160 GGDEF domain RGE_RS00130 92c68f256fe1ffe4cb3513cb32a192d7 496 Pfam PF00990 Diguanylate cyclase, GGDEF domain 330 488 1.4E-37 T 26-04-2016 IPR000160 GGDEF domain RGE_RS00130 92c68f256fe1ffe4cb3513cb32a192d7 496 PANTHER PTHR10799 6 277 1.8E-19 T 26-04-2016 RGE_RS00130 92c68f256fe1ffe4cb3513cb32a192d7 496 Gene3D G3DSA:3.30.70.270 332 492 1.0E-47 T 26-04-2016 RGE_RS00130 92c68f256fe1ffe4cb3513cb32a192d7 496 Gene3D G3DSA:3.30.70.270 123 283 2.5E-40 T 26-04-2016 RGE_RS00130 92c68f256fe1ffe4cb3513cb32a192d7 496 SUPERFAMILY SSF55073 335 491 1.1E-41 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS00130 92c68f256fe1ffe4cb3513cb32a192d7 496 SUPERFAMILY SSF55073 127 282 2.28E-35 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS00130 92c68f256fe1ffe4cb3513cb32a192d7 496 PANTHER PTHR10799:SF710 6 277 1.8E-19 T 26-04-2016 RGE_RS00130 92c68f256fe1ffe4cb3513cb32a192d7 496 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 123 280 2.1E-32 T 26-04-2016 IPR000160 GGDEF domain RGE_RS00130 92c68f256fe1ffe4cb3513cb32a192d7 496 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 328 491 1.3E-43 T 26-04-2016 IPR000160 GGDEF domain RGE_RS00130 92c68f256fe1ffe4cb3513cb32a192d7 496 SMART SM00267 113 281 1.2E-36 T 26-04-2016 IPR000160 GGDEF domain RGE_RS00130 92c68f256fe1ffe4cb3513cb32a192d7 496 SMART SM00267 319 492 2.8E-49 T 26-04-2016 IPR000160 GGDEF domain RGE_RS19565 02c9d3ed7fbb8f1c6846067b4cd46922 100 Gene3D G3DSA:3.30.280.10 1 99 5.8E-49 T 26-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19565 02c9d3ed7fbb8f1c6846067b4cd46922 100 PIRSF PIRSF001223 1 100 6.9E-51 T 26-04-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19565 02c9d3ed7fbb8f1c6846067b4cd46922 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 2.0E-31 T 26-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19565 02c9d3ed7fbb8f1c6846067b4cd46922 100 SUPERFAMILY SSF54111 1 99 9.81E-46 T 26-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19565 02c9d3ed7fbb8f1c6846067b4cd46922 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 8.8E-51 T 26-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19565 02c9d3ed7fbb8f1c6846067b4cd46922 100 PANTHER PTHR33569:SF1 2 99 2.5E-45 T 26-04-2016 RGE_RS19565 02c9d3ed7fbb8f1c6846067b4cd46922 100 PANTHER PTHR33569 2 99 2.5E-45 T 26-04-2016 RGE_RS19565 02c9d3ed7fbb8f1c6846067b4cd46922 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 34.78 T 26-04-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19565 02c9d3ed7fbb8f1c6846067b4cd46922 100 Pfam PF00547 Urease, gamma subunit 1 99 3.8E-47 T 26-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS00515 45d1a0bc297406ecd3d07712b148f168 622 Gene3D G3DSA:3.40.449.10 15 251 5.2E-95 T 26-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 RGE_RS00515 45d1a0bc297406ecd3d07712b148f168 622 ProSitePatterns PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. 276 284 - T 26-04-2016 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site GO:0004613 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 RGE_RS00515 45d1a0bc297406ecd3d07712b148f168 622 PANTHER PTHR11561 24 622 0.0 T 26-04-2016 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 RGE_RS00515 45d1a0bc297406ecd3d07712b148f168 622 SUPERFAMILY SSF53795 252 621 4.35E-150 T 26-04-2016 RGE_RS00515 45d1a0bc297406ecd3d07712b148f168 622 Gene3D G3DSA:3.90.228.20 252 323 3.3E-30 T 26-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 RGE_RS00515 45d1a0bc297406ecd3d07712b148f168 622 Gene3D G3DSA:3.90.228.20 344 620 5.3E-91 T 26-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 RGE_RS00515 45d1a0bc297406ecd3d07712b148f168 622 Pfam PF00821 Phosphoenolpyruvate carboxykinase 25 620 2.3E-272 T 26-04-2016 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 RGE_RS00515 45d1a0bc297406ecd3d07712b148f168 622 PIRSF PIRSF001348 3 622 1.8E-270 T 26-04-2016 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 RGE_RS00515 45d1a0bc297406ecd3d07712b148f168 622 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 13 621 49.773 T 26-04-2016 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 RGE_RS00515 45d1a0bc297406ecd3d07712b148f168 622 SUPERFAMILY SSF68923 12 251 3.14E-96 T 26-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 RGE_RS05820 7c8e59472e93b76c787c4a6ce7652ed4 336 Gene3D G3DSA:1.10.150.130 28 92 2.4E-5 T 26-04-2016 IPR023109 Integrase/recombinase, N-terminal RGE_RS05820 7c8e59472e93b76c787c4a6ce7652ed4 336 PANTHER PTHR30349:SF28 20 193 7.6E-104 T 26-04-2016 RGE_RS05820 7c8e59472e93b76c787c4a6ce7652ed4 336 PANTHER PTHR30349:SF28 211 318 7.6E-104 T 26-04-2016 RGE_RS05820 7c8e59472e93b76c787c4a6ce7652ed4 336 SUPERFAMILY SSF56349 19 318 1.62E-45 T 26-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RGE_RS05820 7c8e59472e93b76c787c4a6ce7652ed4 336 Pfam PF00589 Phage integrase family 118 318 1.8E-46 T 26-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS05820 7c8e59472e93b76c787c4a6ce7652ed4 336 TIGRFAM TIGR02249 integrase_gron: integron integrase 18 332 4.9E-135 T 26-04-2016 IPR011946 Integrase, integron-type GO:0003677|GO:0006310|GO:0015074 RGE_RS05820 7c8e59472e93b76c787c4a6ce7652ed4 336 Gene3D G3DSA:1.10.443.10 118 318 4.7E-50 T 26-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS05820 7c8e59472e93b76c787c4a6ce7652ed4 336 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 18 101 1.1E-21 T 26-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RGE_RS05820 7c8e59472e93b76c787c4a6ce7652ed4 336 PANTHER PTHR30349 20 193 7.6E-104 T 26-04-2016 RGE_RS05820 7c8e59472e93b76c787c4a6ce7652ed4 336 PANTHER PTHR30349 211 318 7.6E-104 T 26-04-2016 RGE_RS22015 4c6099544f67e7915d934996ea6b439b 202 Pfam PF00072 Response regulator receiver domain 78 187 2.2E-13 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS22015 4c6099544f67e7915d934996ea6b439b 202 Gene3D G3DSA:3.40.50.2300 75 197 4.8E-21 T 26-04-2016 RGE_RS22015 4c6099544f67e7915d934996ea6b439b 202 PANTHER PTHR26402 76 166 1.0E-15 T 26-04-2016 RGE_RS22015 4c6099544f67e7915d934996ea6b439b 202 Pfam PF12728 Helix-turn-helix domain 13 59 1.7E-10 T 26-04-2016 RGE_RS22015 4c6099544f67e7915d934996ea6b439b 202 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 8 54 2.9E-12 T 26-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 RGE_RS22015 4c6099544f67e7915d934996ea6b439b 202 SUPERFAMILY SSF46955 12 58 5.37E-7 T 26-04-2016 IPR009061 Putative DNA-binding domain RGE_RS22015 4c6099544f67e7915d934996ea6b439b 202 SMART SM00448 76 191 6.6E-9 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS22015 4c6099544f67e7915d934996ea6b439b 202 SUPERFAMILY SSF52172 71 196 7.83E-21 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS13555 63bf21d35ca251c3921c4a01885da255 106 PANTHER PTHR34606 4 105 2.0E-18 T 26-04-2016 RGE_RS13555 63bf21d35ca251c3921c4a01885da255 106 SMART SM00749 43 106 1.1E-7 T 26-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria RGE_RS13555 63bf21d35ca251c3921c4a01885da255 106 Pfam PF04972 BON domain 38 105 1.5E-19 T 26-04-2016 IPR007055 BON domain RGE_RS16180 e8fbc0d770ef7904a024d31e4c2e5777 635 Gene3D G3DSA:3.40.50.300 156 340 2.3E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16180 e8fbc0d770ef7904a024d31e4c2e5777 635 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 109 600 9.5E-239 T 26-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 RGE_RS16180 e8fbc0d770ef7904a024d31e4c2e5777 635 SUPERFAMILY SSF140990 411 611 5.89E-76 T 26-04-2016 RGE_RS16180 e8fbc0d770ef7904a024d31e4c2e5777 635 Pfam PF01434 Peptidase family M41 391 599 5.1E-81 T 26-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 RGE_RS16180 e8fbc0d770ef7904a024d31e4c2e5777 635 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 197 329 4.3E-46 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS16180 e8fbc0d770ef7904a024d31e4c2e5777 635 PANTHER PTHR23076 5 611 0.0 T 26-04-2016 RGE_RS16180 e8fbc0d770ef7904a024d31e4c2e5777 635 SUPERFAMILY SSF52540 154 400 4.57E-72 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16180 e8fbc0d770ef7904a024d31e4c2e5777 635 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 8 606 37.439 T 26-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 RGE_RS16180 e8fbc0d770ef7904a024d31e4c2e5777 635 Pfam PF06480 FtsH Extracellular 11 93 1.3E-11 T 26-04-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 RGE_RS16180 e8fbc0d770ef7904a024d31e4c2e5777 635 SMART SM00382 193 332 2.4E-26 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS16180 e8fbc0d770ef7904a024d31e4c2e5777 635 ProSitePatterns PS00674 AAA-protein family signature. 300 318 - T 26-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RGE_RS16180 e8fbc0d770ef7904a024d31e4c2e5777 635 Gene3D G3DSA:1.10.8.60 341 414 8.2E-28 T 26-04-2016 RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 Pfam PF00575 S1 RNA binding domain 655 726 4.6E-22 T 26-04-2016 IPR003029 S1 domain GO:0003676 RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 SUPERFAMILY SSF50249 644 727 6.79E-25 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 SUPERFAMILY SSF53098 323 475 8.34E-49 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 Pfam PF09371 Tex-like protein N-terminal domain 8 191 2.4E-66 T 26-04-2016 IPR018974 Tex-like protein, N-terminal RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 SUPERFAMILY SSF47781 566 638 8.0E-20 T 26-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 Pfam PF12836 Helix-hairpin-helix motif 497 561 7.9E-27 T 26-04-2016 RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 Gene3D G3DSA:1.10.150.310 505 636 6.9E-46 T 26-04-2016 IPR023097 Tex RuvX-like domain RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 Gene3D G3DSA:1.10.3500.10 109 323 2.7E-97 T 26-04-2016 IPR023323 Tex-like domain RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 Gene3D G3DSA:1.10.3500.10 457 504 2.7E-97 T 26-04-2016 IPR023323 Tex-like domain RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 Gene3D G3DSA:2.40.50.140 648 726 3.1E-28 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 PANTHER PTHR10724 2 765 0.0 T 26-04-2016 RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 Gene3D G3DSA:3.30.420.140 327 456 9.6E-49 T 26-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 SUPERFAMILY SSF47781 476 564 4.67E-28 T 26-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 Gene3D G3DSA:1.10.10.650 3 107 5.1E-45 T 26-04-2016 IPR023319 Tex-like protein, HTH domain RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 SMART SM00316 655 726 5.9E-27 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 SUPERFAMILY SSF158832 3 322 1.83E-110 T 26-04-2016 RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 Pfam PF16921 Tex protein YqgF-like domain 327 457 4.0E-51 T 26-04-2016 IPR032639 Tex protein, YqgF-like domain RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 PANTHER PTHR10724:SF1 2 765 0.0 T 26-04-2016 RGE_RS11925 aede22910ee77e09641361f51a2cd4e8 779 SMART SM00732 327 430 2.4E-32 T 26-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RGE_RS08160 580eb7aa58026b1a88df3ad2185b97c8 509 Pfam PF00501 AMP-binding enzyme 14 411 5.5E-84 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS08160 580eb7aa58026b1a88df3ad2185b97c8 509 SUPERFAMILY SSF56801 7 503 9.42E-132 T 26-04-2016 RGE_RS08160 580eb7aa58026b1a88df3ad2185b97c8 509 Gene3D G3DSA:3.30.300.30 406 499 9.5E-30 T 26-04-2016 RGE_RS08160 580eb7aa58026b1a88df3ad2185b97c8 509 Gene3D G3DSA:3.40.50.980 169 325 6.9E-34 T 26-04-2016 RGE_RS08160 580eb7aa58026b1a88df3ad2185b97c8 509 Gene3D G3DSA:3.40.50.980 13 168 1.6E-23 T 26-04-2016 RGE_RS08160 580eb7aa58026b1a88df3ad2185b97c8 509 PANTHER PTHR24095 27 142 3.9E-148 T 26-04-2016 RGE_RS08160 580eb7aa58026b1a88df3ad2185b97c8 509 PANTHER PTHR24095 158 498 3.9E-148 T 26-04-2016 RGE_RS08160 580eb7aa58026b1a88df3ad2185b97c8 509 Gene3D G3DSA:2.30.38.10 334 404 1.2E-23 T 26-04-2016 RGE_RS08160 580eb7aa58026b1a88df3ad2185b97c8 509 Pfam PF13193 AMP-binding enzyme C-terminal domain 420 495 1.6E-17 T 26-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RGE_RS08160 580eb7aa58026b1a88df3ad2185b97c8 509 ProSitePatterns PS00455 Putative AMP-binding domain signature. 164 175 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 SMART SM01009 199 314 7.0E-37 T 26-04-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 Gene3D G3DSA:1.10.10.60 143 193 1.0E-12 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 SUPERFAMILY SSF55945 199 298 2.51E-21 T 26-04-2016 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 PANTHER PTHR10242:SF3 267 477 3.7E-71 T 26-04-2016 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 PANTHER PTHR10242:SF3 199 242 3.7E-71 T 26-04-2016 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 Pfam PF06029 AlkA N-terminal domain 199 314 1.8E-28 T 26-04-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 Gene3D G3DSA:3.40.10.10 4 79 8.4E-32 T 26-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 SUPERFAMILY SSF46689 142 191 2.11E-9 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 Gene3D G3DSA:1.10.10.60 91 142 8.2E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 SMART SM00478 324 479 2.0E-17 T 26-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 PANTHER PTHR10242 267 477 3.7E-71 T 26-04-2016 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 PANTHER PTHR10242 199 242 3.7E-71 T 26-04-2016 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 SUPERFAMILY SSF48150 305 477 7.5E-42 T 26-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 SMART SM00342 105 188 4.4E-22 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 Gene3D G3DSA:1.10.1670.10 435 477 5.1E-14 T 26-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 320 450 5.7E-11 T 26-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 Gene3D G3DSA:3.30.310.20 200 314 8.3E-31 T 26-04-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 Pfam PF02805 Metal binding domain of Ada 12 74 1.4E-28 T 26-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 142 184 - T 26-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 94 134 - T 26-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 Pfam PF12833 Helix-turn-helix domain 111 189 3.8E-21 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 Gene3D G3DSA:1.10.340.30 315 434 1.3E-34 T 26-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RGE_RS17120 a59503915d53069a55ad63e742464fc5 482 SUPERFAMILY SSF57884 4 79 6.41E-30 T 26-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 RGE_RS05985 72592d204428da4c8124d1bdc1f033e5 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 6 149 8.5E-35 T 26-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RGE_RS05985 72592d204428da4c8124d1bdc1f033e5 328 Gene3D G3DSA:3.90.110.10 158 327 6.2E-70 T 26-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RGE_RS05985 72592d204428da4c8124d1bdc1f033e5 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 3 322 3.2E-142 T 26-04-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RGE_RS05985 72592d204428da4c8124d1bdc1f033e5 328 SUPERFAMILY SSF51735 4 158 6.95E-45 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05985 72592d204428da4c8124d1bdc1f033e5 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 2 328 55.581 T 26-04-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RGE_RS05985 72592d204428da4c8124d1bdc1f033e5 328 PANTHER PTHR23382 3 328 5.1E-190 T 26-04-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RGE_RS05985 72592d204428da4c8124d1bdc1f033e5 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 160 321 9.1E-32 T 26-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RGE_RS05985 72592d204428da4c8124d1bdc1f033e5 328 Gene3D G3DSA:3.40.50.720 3 156 1.6E-54 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05985 72592d204428da4c8124d1bdc1f033e5 328 PIRSF PIRSF000102 2 321 1.3E-62 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS05985 72592d204428da4c8124d1bdc1f033e5 328 SUPERFAMILY SSF56327 160 327 2.78E-57 T 26-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RGE_RS18835 e96ae55b6f29d341f439d42e265c8a60 241 Pfam PF01709 Transcriptional regulator 5 237 2.3E-91 T 26-04-2016 IPR002876 Transcriptional regulator TACO1-like RGE_RS18835 e96ae55b6f29d341f439d42e265c8a60 241 Gene3D G3DSA:1.10.10.200 1 78 2.8E-35 T 26-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like RGE_RS18835 e96ae55b6f29d341f439d42e265c8a60 241 PANTHER PTHR12532 1 241 1.9E-112 T 26-04-2016 IPR002876 Transcriptional regulator TACO1-like RGE_RS18835 e96ae55b6f29d341f439d42e265c8a60 241 Gene3D G3DSA:3.30.1270.10 212 240 2.2E-37 T 26-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 RGE_RS18835 e96ae55b6f29d341f439d42e265c8a60 241 Gene3D G3DSA:3.30.1270.10 82 134 2.2E-37 T 26-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 RGE_RS18835 e96ae55b6f29d341f439d42e265c8a60 241 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 35.641 T 26-04-2016 IPR002876 Transcriptional regulator TACO1-like RGE_RS18835 e96ae55b6f29d341f439d42e265c8a60 241 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 238 9.8E-95 T 26-04-2016 IPR002876 Transcriptional regulator TACO1-like RGE_RS18835 e96ae55b6f29d341f439d42e265c8a60 241 SUPERFAMILY SSF75625 3 239 9.03E-96 T 26-04-2016 IPR029072 YebC-like RGE_RS18835 e96ae55b6f29d341f439d42e265c8a60 241 Gene3D G3DSA:3.30.70.980 135 205 2.0E-26 T 26-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 RGE_RS20600 96294f5548667da97aa29935f1465c71 296 PIRSF PIRSF000401 1 296 9.0E-77 T 26-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RGE_RS20600 96294f5548667da97aa29935f1465c71 296 PANTHER PTHR18895:SF69 15 295 1.1E-60 T 26-04-2016 RGE_RS20600 96294f5548667da97aa29935f1465c71 296 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 1 294 30.317 T 26-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RGE_RS20600 96294f5548667da97aa29935f1465c71 296 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 2 285 1.2E-59 T 26-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RGE_RS20600 96294f5548667da97aa29935f1465c71 296 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 293 1.2E-75 T 26-04-2016 RGE_RS20600 96294f5548667da97aa29935f1465c71 296 PANTHER PTHR18895 15 295 1.1E-60 T 26-04-2016 RGE_RS20600 96294f5548667da97aa29935f1465c71 296 Gene3D G3DSA:3.40.50.150 115 288 3.4E-37 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS20600 96294f5548667da97aa29935f1465c71 296 SUPERFAMILY SSF53335 85 287 9.77E-37 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS00720 84b6aeeb356632e993dc54e015b8e6b3 430 SUPERFAMILY SSF103473 12 429 4.97E-46 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS00720 84b6aeeb356632e993dc54e015b8e6b3 430 Gene3D G3DSA:1.20.1250.20 227 420 2.2E-15 T 26-04-2016 RGE_RS00720 84b6aeeb356632e993dc54e015b8e6b3 430 PANTHER PTHR11360 79 419 3.4E-23 T 26-04-2016 RGE_RS00720 84b6aeeb356632e993dc54e015b8e6b3 430 Gene3D G3DSA:1.20.1250.20 26 217 6.1E-25 T 26-04-2016 RGE_RS00720 84b6aeeb356632e993dc54e015b8e6b3 430 Pfam PF07690 Major Facilitator Superfamily 37 363 3.2E-27 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS01740 e633243ba3159e0389db7f6b7ad70055 207 ProSitePatterns PS00632 Ribosomal protein S4 signature. 95 119 - T 26-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 RGE_RS01740 e633243ba3159e0389db7f6b7ad70055 207 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 207 1.3E-78 T 26-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RGE_RS01740 e633243ba3159e0389db7f6b7ad70055 207 Gene3D G3DSA:1.10.1050.10 2 102 9.3E-41 T 26-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RGE_RS01740 e633243ba3159e0389db7f6b7ad70055 207 Gene3D G3DSA:3.10.290.10 103 191 4.1E-33 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS01740 e633243ba3159e0389db7f6b7ad70055 207 SMART SM01390 3 96 2.3E-45 T 26-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RGE_RS01740 e633243ba3159e0389db7f6b7ad70055 207 Pfam PF01479 S4 domain 98 144 1.3E-21 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS01740 e633243ba3159e0389db7f6b7ad70055 207 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 96 1.8E-29 T 26-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RGE_RS01740 e633243ba3159e0389db7f6b7ad70055 207 PANTHER PTHR11831:SF4 1 207 5.1E-87 T 26-04-2016 RGE_RS01740 e633243ba3159e0389db7f6b7ad70055 207 SMART SM00363 97 161 1.2E-19 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS01740 e633243ba3159e0389db7f6b7ad70055 207 SUPERFAMILY SSF55174 2 207 1.96E-67 T 26-04-2016 RGE_RS01740 e633243ba3159e0389db7f6b7ad70055 207 PANTHER PTHR11831 1 207 5.1E-87 T 26-04-2016 IPR022801 Ribosomal protein S4/S9 RGE_RS01740 e633243ba3159e0389db7f6b7ad70055 207 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 207 34.584 T 26-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RGE_RS18090 6e13bd5b5d156beeaf5037d8fd2ad932 231 SUPERFAMILY SSF51206 14 151 2.23E-30 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS18090 6e13bd5b5d156beeaf5037d8fd2ad932 231 Pfam PF13545 Crp-like helix-turn-helix domain 158 228 4.2E-15 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS18090 6e13bd5b5d156beeaf5037d8fd2ad932 231 SMART SM00100 19 137 2.9E-15 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS18090 6e13bd5b5d156beeaf5037d8fd2ad932 231 SMART SM00419 175 223 1.1E-8 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS18090 6e13bd5b5d156beeaf5037d8fd2ad932 231 Gene3D G3DSA:2.60.120.10 18 152 4.5E-28 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS18090 6e13bd5b5d156beeaf5037d8fd2ad932 231 Pfam PF00027 Cyclic nucleotide-binding domain 39 123 6.5E-19 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS18090 6e13bd5b5d156beeaf5037d8fd2ad932 231 PANTHER PTHR24567 7 230 1.1E-45 T 26-04-2016 RGE_RS18090 6e13bd5b5d156beeaf5037d8fd2ad932 231 Gene3D G3DSA:1.10.10.10 158 224 6.1E-15 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18090 6e13bd5b5d156beeaf5037d8fd2ad932 231 SUPERFAMILY SSF46785 156 229 1.0E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS20940 75d7f6b9766dda302a388d864861a0ae 480 Gene3D G3DSA:3.40.50.1980 164 262 1.4E-26 T 26-04-2016 RGE_RS20940 75d7f6b9766dda302a388d864861a0ae 480 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 19 427 9.3E-116 T 26-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RGE_RS20940 75d7f6b9766dda302a388d864861a0ae 480 PANTHER PTHR33712 9 201 1.7E-101 T 26-04-2016 RGE_RS20940 75d7f6b9766dda302a388d864861a0ae 480 PANTHER PTHR33712 220 429 1.7E-101 T 26-04-2016 RGE_RS20940 75d7f6b9766dda302a388d864861a0ae 480 TIGRFAM TIGR01285 nifN: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 4 427 4.0E-176 T 26-04-2016 IPR005975 Nitrogenase molybdenum-iron cofactor biosynthesis protein GO:0006461|GO:0009399 UniPathway: UPA00782 RGE_RS20940 75d7f6b9766dda302a388d864861a0ae 480 PANTHER PTHR33712:SF2 9 201 1.7E-101 T 26-04-2016 RGE_RS20940 75d7f6b9766dda302a388d864861a0ae 480 PANTHER PTHR33712:SF2 220 429 1.7E-101 T 26-04-2016 RGE_RS20940 75d7f6b9766dda302a388d864861a0ae 480 SUPERFAMILY SSF53807 8 436 7.2E-131 T 26-04-2016 RGE_RS20940 75d7f6b9766dda302a388d864861a0ae 480 Gene3D G3DSA:3.40.50.1980 19 159 2.7E-44 T 26-04-2016 RGE_RS20940 75d7f6b9766dda302a388d864861a0ae 480 Gene3D G3DSA:3.40.50.1980 290 403 6.4E-30 T 26-04-2016 RGE_RS20940 75d7f6b9766dda302a388d864861a0ae 480 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 37 44 - T 26-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RGE_RS08435 0478c3c90c91f9fa4e228bcbb18ec5ca 452 PANTHER PTHR32089:SF33 95 222 4.5E-15 T 26-04-2016 RGE_RS08435 0478c3c90c91f9fa4e228bcbb18ec5ca 452 SUPERFAMILY SSF58104 47 274 5.1E-28 T 26-04-2016 RGE_RS08435 0478c3c90c91f9fa4e228bcbb18ec5ca 452 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 156 185 7.5E-11 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS08435 0478c3c90c91f9fa4e228bcbb18ec5ca 452 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 127 154 7.5E-11 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS08435 0478c3c90c91f9fa4e228bcbb18ec5ca 452 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 93 241 2.2E-18 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS08435 0478c3c90c91f9fa4e228bcbb18ec5ca 452 SMART SM00283 36 270 1.6E-4 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS08435 0478c3c90c91f9fa4e228bcbb18ec5ca 452 PANTHER PTHR32089 95 222 4.5E-15 T 26-04-2016 RGE_RS08435 0478c3c90c91f9fa4e228bcbb18ec5ca 452 Gene3D G3DSA:1.10.287.950 61 243 2.8E-27 T 26-04-2016 RGE_RS06135 2992f1c77d68403a6e154cbbe150f865 269 PANTHER PTHR10314 1 51 1.8E-21 T 26-04-2016 RGE_RS06135 2992f1c77d68403a6e154cbbe150f865 269 PANTHER PTHR10314 74 134 1.8E-21 T 26-04-2016 RGE_RS06135 2992f1c77d68403a6e154cbbe150f865 269 PANTHER PTHR10314:SF4 1 51 1.8E-21 T 26-04-2016 RGE_RS06135 2992f1c77d68403a6e154cbbe150f865 269 PANTHER PTHR10314:SF4 74 134 1.8E-21 T 26-04-2016 RGE_RS06135 2992f1c77d68403a6e154cbbe150f865 269 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 266 33.537 T 26-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS06135 2992f1c77d68403a6e154cbbe150f865 269 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 261 6.4E-70 T 26-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS06135 2992f1c77d68403a6e154cbbe150f865 269 Gene3D G3DSA:3.20.20.70 2 268 2.1E-98 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS06135 2992f1c77d68403a6e154cbbe150f865 269 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 26-04-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS06135 2992f1c77d68403a6e154cbbe150f865 269 SUPERFAMILY SSF51366 1 254 3.01E-86 T 26-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RGE_RS06135 2992f1c77d68403a6e154cbbe150f865 269 Pfam PF00290 Tryptophan synthase alpha chain 8 255 1.7E-82 T 26-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 PANTHER PTHR21060:SF11 3 404 4.2E-153 T 26-04-2016 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 SUPERFAMILY SSF53067 165 395 1.84E-78 T 26-04-2016 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 Pfam PF00871 Acetokinase family 7 388 1.7E-106 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 PIRSF PIRSF000722 4 398 6.7E-134 T 26-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 208 225 - T 26-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 Gene3D G3DSA:3.30.420.40 8 210 1.2E-8 T 26-04-2016 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 PRINTS PR00471 Acetate kinase family signature 302 315 1.8E-40 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 PRINTS PR00471 Acetate kinase family signature 324 340 1.8E-40 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 PRINTS PR00471 Acetate kinase family signature 376 388 1.8E-40 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 PRINTS PR00471 Acetate kinase family signature 179 192 1.8E-40 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 PRINTS PR00471 Acetate kinase family signature 208 229 1.8E-40 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 PRINTS PR00471 Acetate kinase family signature 7 18 1.8E-40 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 Hamap MF_00020 Acetate kinase [ackA]. 1 398 155.267 T 26-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 TIGRFAM TIGR00016 ackA: acetate kinase 6 392 1.1E-106 T 26-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 SUPERFAMILY SSF53067 6 200 1.68E-56 T 26-04-2016 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 PANTHER PTHR21060 3 404 4.2E-153 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS08625 25c88210a26305bc6870a5d955dd57a0 420 Gene3D G3DSA:3.30.420.40 211 393 6.3E-69 T 26-04-2016 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 PANTHER PTHR30055:SF36 1 123 5.1E-22 T 26-04-2016 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 SUPERFAMILY SSF48498 72 205 2.67E-30 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS14500 5959db195cebb98cf977b072d341976f 206 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 72 204 6.0E-28 T 26-04-2016 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 Gene3D G3DSA:1.10.10.60 3 63 2.5E-23 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 Gene3D G3DSA:1.10.357.10 72 205 2.3E-37 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 PRINTS PR00400 Tetracycline repressor protein signature 78 97 3.3E-37 T 26-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 PRINTS PR00400 Tetracycline repressor protein signature 24 47 3.3E-37 T 26-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 PRINTS PR00400 Tetracycline repressor protein signature 98 121 3.3E-37 T 26-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 PRINTS PR00400 Tetracycline repressor protein signature 187 201 3.3E-37 T 26-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 PRINTS PR00400 Tetracycline repressor protein signature 133 152 3.3E-37 T 26-04-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 SUPERFAMILY SSF46689 4 70 2.0E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 7.0E-10 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 7.0E-10 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 9.7E-16 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS14500 5959db195cebb98cf977b072d341976f 206 PANTHER PTHR30055 1 123 5.1E-22 T 26-04-2016 RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 Gene3D G3DSA:3.40.50.200 453 519 4.1E-79 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 Gene3D G3DSA:3.40.50.200 125 318 4.1E-79 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 PANTHER PTHR10795:SF419 128 331 2.0E-53 T 26-04-2016 RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 PANTHER PTHR10795:SF419 12 111 2.0E-53 T 26-04-2016 RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 PANTHER PTHR10795:SF419 372 518 2.0E-53 T 26-04-2016 RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 144 155 - T 26-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 181 191 - T 26-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 Gene3D G3DSA:3.50.30.30 319 446 5.3E-34 T 26-04-2016 RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 Pfam PF02225 PA domain 355 435 1.2E-12 T 26-04-2016 IPR003137 PA domain RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 SUPERFAMILY SSF52743 121 520 4.32E-85 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 Pfam PF00082 Subtilase family 442 509 1.7E-12 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 Pfam PF00082 Subtilase family 143 327 1.4E-30 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 Gene3D G3DSA:3.30.70.80 34 102 5.5E-9 T 26-04-2016 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 PANTHER PTHR10795 128 331 2.0E-53 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 PANTHER PTHR10795 12 111 2.0E-53 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 PANTHER PTHR10795 372 518 2.0E-53 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 PRINTS PR00723 Subtilisin serine protease family (S8) signature 139 158 4.0E-15 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 PRINTS PR00723 Subtilisin serine protease family (S8) signature 177 190 4.0E-15 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 PRINTS PR00723 Subtilisin serine protease family (S8) signature 458 474 4.0E-15 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 SUPERFAMILY SSF54897 38 99 9.07E-6 T 26-04-2016 IPR009020 Proteinase inhibitor, propeptide RGE_RS16940 1e242c96a3181ed19fe02e4584d6a574 527 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 459 469 - T 26-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.9E-6 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 1.9E-6 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 1.9E-6 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PANTHER PTHR24322:SF57 147 179 3.9E-31 T 26-04-2016 RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PANTHER PTHR24322:SF57 9 131 3.9E-31 T 26-04-2016 RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PANTHER PTHR24322 147 179 3.9E-31 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PANTHER PTHR24322 9 131 3.9E-31 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 230 1.4E-46 T 26-04-2016 RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 SUPERFAMILY SSF51735 3 231 2.73E-62 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 Gene3D G3DSA:3.40.50.720 3 231 1.3E-59 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 4.6E-30 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 4.6E-30 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 4.6E-30 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 4.6E-30 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 4.6E-30 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS09775 113dbac03f92b83fd09266fe1e722103 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 4.6E-30 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17440 4bf7b76867c67b8588d069806918e703 618 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 53 78 - T 26-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 RGE_RS17440 4bf7b76867c67b8588d069806918e703 618 Gene3D G3DSA:1.10.645.10 13 603 1.1E-221 T 26-04-2016 IPR029014 NiFe hydrogenase-like RGE_RS17440 4bf7b76867c67b8588d069806918e703 618 Pfam PF00374 Nickel-dependent hydrogenase 53 603 8.1E-215 T 26-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 RGE_RS17440 4bf7b76867c67b8588d069806918e703 618 PANTHER PTHR11993:SF22 385 610 1.1E-213 T 26-04-2016 RGE_RS17440 4bf7b76867c67b8588d069806918e703 618 PANTHER PTHR11993:SF22 4 130 1.1E-213 T 26-04-2016 RGE_RS17440 4bf7b76867c67b8588d069806918e703 618 PANTHER PTHR11993:SF22 201 273 1.1E-213 T 26-04-2016 RGE_RS17440 4bf7b76867c67b8588d069806918e703 618 PANTHER PTHR11993 385 610 1.1E-213 T 26-04-2016 RGE_RS17440 4bf7b76867c67b8588d069806918e703 618 PANTHER PTHR11993 4 130 1.1E-213 T 26-04-2016 RGE_RS17440 4bf7b76867c67b8588d069806918e703 618 PANTHER PTHR11993 201 273 1.1E-213 T 26-04-2016 RGE_RS17440 4bf7b76867c67b8588d069806918e703 618 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 594 603 - T 26-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 RGE_RS17440 4bf7b76867c67b8588d069806918e703 618 SUPERFAMILY SSF56762 10 603 1.07E-171 T 26-04-2016 IPR029014 NiFe hydrogenase-like RGE_RS06000 2780b19dc19999193288f3ee59304570 120 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 4 106 1.1E-15 T 26-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 RGE_RS06000 2780b19dc19999193288f3ee59304570 120 PANTHER PTHR38689:SF1 17 120 2.1E-27 T 26-04-2016 RGE_RS06000 2780b19dc19999193288f3ee59304570 120 PIRSF PIRSF000169 6 120 4.0E-39 T 26-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 RGE_RS06000 2780b19dc19999193288f3ee59304570 120 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 14 118 5.9E-36 T 26-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 RGE_RS06000 2780b19dc19999193288f3ee59304570 120 PANTHER PTHR38689 17 120 2.1E-27 T 26-04-2016 RGE_RS06000 2780b19dc19999193288f3ee59304570 120 Gene3D G3DSA:1.20.1300.10 10 119 1.6E-35 T 26-04-2016 RGE_RS06000 2780b19dc19999193288f3ee59304570 120 SUPERFAMILY SSF81343 9 120 6.98E-31 T 26-04-2016 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 SUPERFAMILY SSF50715 376 591 1.2E-63 T 26-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 55 593 4.3E-194 T 26-04-2016 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 61 72 - T 26-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 Gene3D G3DSA:2.40.240.10 504 590 2.6E-28 T 26-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 Gene3D G3DSA:3.90.800.10 132 240 4.9E-43 T 26-04-2016 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 Gene3D G3DSA:2.40.240.10 384 503 6.2E-40 T 26-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 Gene3D G3DSA:3.40.50.620 54 123 2.9E-43 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 Gene3D G3DSA:3.40.50.620 243 298 2.9E-43 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 SUPERFAMILY SSF52374 54 382 5.33E-96 T 26-04-2016 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 376 571 6.6E-48 T 26-04-2016 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: REACT_71 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 Gene3D G3DSA:1.10.1160.10 299 373 5.4E-32 T 26-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 54 369 7.7E-102 T 26-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 PANTHER PTHR11451:SF29 303 594 5.4E-184 T 26-04-2016 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 PANTHER PTHR11451:SF29 54 278 5.4E-184 T 26-04-2016 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 PANTHER PTHR11451 303 594 5.4E-184 T 26-04-2016 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 PANTHER PTHR11451 54 278 5.4E-184 T 26-04-2016 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 592 48.378 T 26-04-2016 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 PRINTS PR00987 Glutamyl-tRNA synthetase signature 58 70 9.7E-11 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 PRINTS PR00987 Glutamyl-tRNA synthetase signature 87 100 9.7E-11 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 PRINTS PR00987 Glutamyl-tRNA synthetase signature 241 251 9.7E-11 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS18860 5bdf88cf404f0118570c6ee7ece4df70 594 PRINTS PR00987 Glutamyl-tRNA synthetase signature 72 83 9.7E-11 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS17590 9bc3cba05bc1225d4df52f1beb193a3a 493 SUPERFAMILY SSF54966 17 158 8.64E-55 T 26-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RGE_RS17590 9bc3cba05bc1225d4df52f1beb193a3a 493 Gene3D G3DSA:3.30.70.150 31 157 2.8E-57 T 26-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RGE_RS17590 9bc3cba05bc1225d4df52f1beb193a3a 493 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 164 470 1.2E-128 T 26-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RGE_RS17590 9bc3cba05bc1225d4df52f1beb193a3a 493 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 205 213 - T 26-04-2016 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RGE_RS17590 9bc3cba05bc1225d4df52f1beb193a3a 493 Hamap MF_01338 Ribulose bisphosphate carboxylase large chain [rbcL]. 17 483 54.615 T 26-04-2016 IPR020888 Ribulose bisphosphate carboxylase, large subunit GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RGE_RS17590 9bc3cba05bc1225d4df52f1beb193a3a 493 PANTHER PTHR23321 34 463 4.8E-224 T 26-04-2016 RGE_RS17590 9bc3cba05bc1225d4df52f1beb193a3a 493 Gene3D G3DSA:3.20.20.110 158 470 4.5E-154 T 26-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RGE_RS17590 9bc3cba05bc1225d4df52f1beb193a3a 493 SUPERFAMILY SSF51649 159 485 5.37E-140 T 26-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RGE_RS17590 9bc3cba05bc1225d4df52f1beb193a3a 493 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 33 153 1.8E-42 T 26-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RGE_RS17590 9bc3cba05bc1225d4df52f1beb193a3a 493 PANTHER PTHR23321:SF19 34 463 4.8E-224 T 26-04-2016 RGE_RS12745 dd83e0359d1ade0258de6dbd2c3ded4c 163 Pfam PF01037 Lrp/AsnC ligand binding domain 84 154 4.4E-18 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS12745 dd83e0359d1ade0258de6dbd2c3ded4c 163 Gene3D G3DSA:3.30.70.920 67 163 1.0E-23 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS12745 dd83e0359d1ade0258de6dbd2c3ded4c 163 Pfam PF13404 AsnC-type helix-turn-helix domain 14 55 4.9E-18 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS12745 dd83e0359d1ade0258de6dbd2c3ded4c 163 PANTHER PTHR30154 6 163 3.1E-54 T 26-04-2016 RGE_RS12745 dd83e0359d1ade0258de6dbd2c3ded4c 163 SUPERFAMILY SSF54909 85 163 4.29E-18 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS12745 dd83e0359d1ade0258de6dbd2c3ded4c 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 14 30 1.6E-15 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS12745 dd83e0359d1ade0258de6dbd2c3ded4c 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 41 1.6E-15 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS12745 dd83e0359d1ade0258de6dbd2c3ded4c 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 41 60 1.6E-15 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS12745 dd83e0359d1ade0258de6dbd2c3ded4c 163 SUPERFAMILY SSF46785 13 73 4.14E-17 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS12745 dd83e0359d1ade0258de6dbd2c3ded4c 163 PANTHER PTHR30154:SF28 6 163 3.1E-54 T 26-04-2016 RGE_RS12745 dd83e0359d1ade0258de6dbd2c3ded4c 163 Gene3D G3DSA:1.10.10.10 15 66 7.4E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS12745 dd83e0359d1ade0258de6dbd2c3ded4c 163 SMART SM00344 14 123 4.7E-40 T 26-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RGE_RS01900 d33ac8e4d952caa97ee2a4ee257288f6 468 Pfam PF01515 Phosphate acetyl/butaryl transferase 241 454 1.9E-42 T 26-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RGE_RS01900 d33ac8e4d952caa97ee2a4ee257288f6 468 SUPERFAMILY SSF54637 10 147 6.18E-41 T 26-04-2016 IPR029069 HotDog domain RGE_RS01900 d33ac8e4d952caa97ee2a4ee257288f6 468 PRINTS PR01483 Fatty acid synthase signature 52 73 7.48094E-6 T 26-04-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 RGE_RS01900 d33ac8e4d952caa97ee2a4ee257288f6 468 PRINTS PR01483 Fatty acid synthase signature 30 52 7.48094E-6 T 26-04-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 RGE_RS01900 d33ac8e4d952caa97ee2a4ee257288f6 468 Gene3D G3DSA:3.40.50.10750 277 432 1.2E-49 T 26-04-2016 RGE_RS01900 d33ac8e4d952caa97ee2a4ee257288f6 468 SUPERFAMILY SSF53659 179 459 7.4E-60 T 26-04-2016 RGE_RS01900 d33ac8e4d952caa97ee2a4ee257288f6 468 Pfam PF01575 MaoC like domain 23 118 1.4E-22 T 26-04-2016 IPR002539 MaoC-like domain RGE_RS01900 d33ac8e4d952caa97ee2a4ee257288f6 468 Gene3D G3DSA:3.10.129.10 12 143 5.9E-46 T 26-04-2016 IPR029069 HotDog domain RGE_RS01900 d33ac8e4d952caa97ee2a4ee257288f6 468 PANTHER PTHR13078 7 142 1.2E-37 T 26-04-2016 RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 Gene3D G3DSA:3.30.70.270 409 564 1.8E-43 T 26-04-2016 RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 SUPERFAMILY SSF48452 290 319 2.56E-12 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 SUPERFAMILY SSF48452 128 248 2.56E-12 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 405 564 2.0E-37 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 SMART SM00267 397 566 9.7E-46 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 579 786 1.4E-20 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 PANTHER PTHR10799 328 666 2.7E-20 T 26-04-2016 RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 Gene3D G3DSA:1.25.40.10 147 336 7.5E-12 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 PANTHER PTHR10799:SF750 328 666 2.7E-20 T 26-04-2016 RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 SUPERFAMILY SSF53790 577 812 1.27E-23 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 Pfam PF00990 Diguanylate cyclase, GGDEF domain 409 562 4.2E-35 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 SUPERFAMILY SSF55073 413 565 6.91E-38 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS23290 55c9e089792c708a6d2cce808cb914cf 838 Gene3D G3DSA:3.40.1010.10 578 695 6.9E-7 T 26-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 SMART SM00382 295 486 7.2E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 SMART SM00382 30 260 6.3E-5 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 SUPERFAMILY SSF52540 266 491 2.66E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 SUPERFAMILY SSF52540 4 232 1.66E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 Gene3D G3DSA:3.40.50.300 265 493 1.4E-69 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 Gene3D G3DSA:3.40.50.300 3 234 4.3E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 Pfam PF12698 ABC-2 family transporter protein 571 908 1.3E-37 T 26-04-2016 RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 PANTHER PTHR24220 286 390 1.9E-228 T 26-04-2016 RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 PANTHER PTHR24220 7 270 1.9E-228 T 26-04-2016 RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 Pfam PF00005 ABC transporter 287 430 3.0E-27 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 Pfam PF00005 ABC transporter 22 168 4.0E-25 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 PANTHER PTHR24220:SF388 7 270 1.9E-228 T 26-04-2016 RGE_RS08995 84f2b9fc66d800801885e49af273082d 916 PANTHER PTHR24220:SF388 286 390 1.9E-228 T 26-04-2016 RGE_RS16465 fe22cd6e23c759b6bdfab6e2040105a4 251 PANTHER PTHR10108 1 239 4.7E-100 T 26-04-2016 RGE_RS16465 fe22cd6e23c759b6bdfab6e2040105a4 251 Gene3D G3DSA:3.40.50.150 25 234 1.1E-50 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16465 fe22cd6e23c759b6bdfab6e2040105a4 251 PANTHER PTHR10108:SF24 1 239 4.7E-100 T 26-04-2016 RGE_RS16465 fe22cd6e23c759b6bdfab6e2040105a4 251 SUPERFAMILY SSF53335 11 233 2.37E-44 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16465 fe22cd6e23c759b6bdfab6e2040105a4 251 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 16 241 36.666 T 26-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RGE_RS16465 fe22cd6e23c759b6bdfab6e2040105a4 251 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 36 51 - T 26-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RGE_RS16465 fe22cd6e23c759b6bdfab6e2040105a4 251 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 25 240 2.1E-85 T 26-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RGE_RS16465 fe22cd6e23c759b6bdfab6e2040105a4 251 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 150 164 - T 26-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RGE_RS16465 fe22cd6e23c759b6bdfab6e2040105a4 251 Pfam PF01209 ubiE/COQ5 methyltransferase family 21 240 3.3E-74 T 26-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RGE_RS01000 75494a17b1a575825957f69d283b3b41 317 PANTHER PTHR11820:SF85 285 314 1.1E-45 T 26-04-2016 RGE_RS01000 75494a17b1a575825957f69d283b3b41 317 PANTHER PTHR11820:SF85 8 268 1.1E-45 T 26-04-2016 RGE_RS01000 75494a17b1a575825957f69d283b3b41 317 Gene3D G3DSA:3.90.850.10 67 296 3.9E-13 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS01000 75494a17b1a575825957f69d283b3b41 317 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 86 312 1.4E-18 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS01000 75494a17b1a575825957f69d283b3b41 317 SUPERFAMILY SSF56529 83 312 2.29E-27 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS01000 75494a17b1a575825957f69d283b3b41 317 PANTHER PTHR11820 285 314 1.1E-45 T 26-04-2016 RGE_RS01000 75494a17b1a575825957f69d283b3b41 317 PANTHER PTHR11820 8 268 1.1E-45 T 26-04-2016 RGE_RS18620 43ec545304c526e7da0443eab598e3c2 161 SUPERFAMILY SSF51182 6 129 1.78E-31 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS18620 43ec545304c526e7da0443eab598e3c2 161 Gene3D G3DSA:2.60.120.10 8 110 1.6E-27 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS18620 43ec545304c526e7da0443eab598e3c2 161 Pfam PF05962 HutD 7 111 1.8E-30 T 26-04-2016 IPR010282 Uncharacterised protein family HutD/Ves RGE_RS18620 43ec545304c526e7da0443eab598e3c2 161 PANTHER PTHR37943 1 109 4.7E-22 T 26-04-2016 RGE_RS18620 43ec545304c526e7da0443eab598e3c2 161 PANTHER PTHR37943:SF1 1 109 4.7E-22 T 26-04-2016 RGE_RS06130 5ce70891dece1c1b12bf83f194725fea 415 Gene3D G3DSA:3.40.50.1100 182 396 1.3E-99 T 26-04-2016 RGE_RS06130 5ce70891dece1c1b12bf83f194725fea 415 SUPERFAMILY SSF53686 7 393 7.86E-149 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS06130 5ce70891dece1c1b12bf83f194725fea 415 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 85 99 - T 26-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS06130 5ce70891dece1c1b12bf83f194725fea 415 PIRSF PIRSF001413 1 400 2.1E-165 T 26-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS06130 5ce70891dece1c1b12bf83f194725fea 415 PANTHER PTHR10314 11 393 2.3E-229 T 26-04-2016 RGE_RS06130 5ce70891dece1c1b12bf83f194725fea 415 PANTHER PTHR10314:SF3 11 393 2.3E-229 T 26-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS06130 5ce70891dece1c1b12bf83f194725fea 415 Gene3D G3DSA:3.40.50.1100 102 181 2.6E-22 T 26-04-2016 RGE_RS06130 5ce70891dece1c1b12bf83f194725fea 415 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 6 395 52.85 T 26-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS06130 5ce70891dece1c1b12bf83f194725fea 415 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 58 382 2.9E-50 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS06130 5ce70891dece1c1b12bf83f194725fea 415 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 11 393 5.2E-193 T 26-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS09245 81893a495d47473be65c110b22584447 159 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 153 6.2E-20 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09245 81893a495d47473be65c110b22584447 159 Gene3D G3DSA:1.10.1740.10 5 68 1.1E-9 T 26-04-2016 RGE_RS09245 81893a495d47473be65c110b22584447 159 Pfam PF04542 Sigma-70 region 2 6 68 7.1E-11 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09245 81893a495d47473be65c110b22584447 159 Pfam PF08281 Sigma-70, region 4 102 152 1.3E-16 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09245 81893a495d47473be65c110b22584447 159 SUPERFAMILY SSF88659 71 158 3.92E-17 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09245 81893a495d47473be65c110b22584447 159 SUPERFAMILY SSF88946 6 86 9.02E-11 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS09245 81893a495d47473be65c110b22584447 159 Gene3D G3DSA:1.10.10.10 94 157 3.5E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09245 81893a495d47473be65c110b22584447 159 PANTHER PTHR30173 13 159 1.4E-29 T 26-04-2016 RGE_RS09245 81893a495d47473be65c110b22584447 159 PANTHER PTHR30173:SF30 13 159 1.4E-29 T 26-04-2016 RGE_RS11500 1d679ae807d3bf18b7887f8cb4e42895 203 Pfam PF00462 Glutaredoxin 77 134 7.9E-11 T 26-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RGE_RS11500 1d679ae807d3bf18b7887f8cb4e42895 203 Gene3D G3DSA:3.40.30.10 76 152 5.1E-15 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS11500 1d679ae807d3bf18b7887f8cb4e42895 203 SUPERFAMILY SSF52833 76 148 2.4E-13 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS02485 291ffde202e2be5135c12b9a1a287947 401 Hamap MF_01643 Phosphoribosylglycinamide formyltransferase 2 [purT]. 9 399 49.979 T 26-04-2016 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 UniPathway: UPA00074 RGE_RS02485 291ffde202e2be5135c12b9a1a287947 401 Gene3D G3DSA:3.30.470.20 202 396 4.8E-69 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS02485 291ffde202e2be5135c12b9a1a287947 401 Pfam PF02222 ATP-grasp domain 125 302 9.1E-50 T 26-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 RGE_RS02485 291ffde202e2be5135c12b9a1a287947 401 PANTHER PTHR11609 1 391 2.1E-187 T 26-04-2016 RGE_RS02485 291ffde202e2be5135c12b9a1a287947 401 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 15 397 5.3E-166 T 26-04-2016 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 UniPathway: UPA00074 RGE_RS02485 291ffde202e2be5135c12b9a1a287947 401 SUPERFAMILY SSF51246 327 397 1.0E-17 T 26-04-2016 IPR011054 Rudiment single hybrid motif RGE_RS02485 291ffde202e2be5135c12b9a1a287947 401 Gene3D G3DSA:3.30.1490.20 125 201 4.8E-25 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS02485 291ffde202e2be5135c12b9a1a287947 401 SUPERFAMILY SSF56059 115 321 2.65E-55 T 26-04-2016 RGE_RS02485 291ffde202e2be5135c12b9a1a287947 401 Gene3D G3DSA:3.40.50.20 5 122 6.2E-36 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS02485 291ffde202e2be5135c12b9a1a287947 401 PANTHER PTHR11609:SF7 1 391 2.1E-187 T 26-04-2016 RGE_RS02485 291ffde202e2be5135c12b9a1a287947 401 SUPERFAMILY SSF52440 4 114 4.75E-29 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 SUPERFAMILY SSF56214 1396 1478 4.53E-6 T 26-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 PANTHER PTHR11712 173 976 6.0E-240 T 26-04-2016 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 PANTHER PTHR11712 1098 1434 6.0E-240 T 26-04-2016 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 PANTHER PTHR11712 11 135 6.0E-240 T 26-04-2016 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 296 411 1.2E-34 T 26-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 578 893 1.6E-15 T 26-04-2016 IPR020801 Polyketide synthase, acyl transferase domain RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Gene3D G3DSA:3.40.47.10 13 300 9.6E-68 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 11 288 1.8E-63 T 26-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Gene3D G3DSA:3.90.470.20 1488 1559 5.2E-12 T 26-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Gene3D G3DSA:3.40.47.10 301 466 6.2E-49 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 PANTHER PTHR11712:SF285 173 976 6.0E-240 T 26-04-2016 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 PANTHER PTHR11712:SF285 1098 1434 6.0E-240 T 26-04-2016 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 PANTHER PTHR11712:SF285 11 135 6.0E-240 T 26-04-2016 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 416 517 2.9E-11 T 26-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 SUPERFAMILY SSF56214 1487 1589 1.43E-16 T 26-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 1487 1552 2.0E-13 T 26-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Pfam PF00698 Acyl transferase domain 577 896 1.2E-19 T 26-04-2016 IPR014043 Acyl transferase RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 SMART SM00825 Beta-ketoacyl synthase 13 466 3.1E-100 T 26-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Gene3D G3DSA:3.40.366.10 573 708 4.0E-42 T 26-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Gene3D G3DSA:3.40.366.10 785 907 4.0E-42 T 26-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 SUPERFAMILY SSF52151 786 889 8.89E-43 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 SUPERFAMILY SSF52151 574 713 8.89E-43 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 SUPERFAMILY SSF53901 8 124 3.12E-69 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 SUPERFAMILY SSF53901 441 455 3.12E-69 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 SUPERFAMILY SSF53901 183 409 3.12E-69 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Gene3D G3DSA:3.90.470.20 1389 1479 3.6E-4 T 26-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 201 217 - T 26-04-2016 IPR018201 Beta-ketoacyl synthase, active site RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Pfam PF14765 Polyketide synthase dehydratase 1046 1331 1.7E-18 T 26-04-2016 IPR020807 Polyketide synthase, dehydratase domain RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 Gene3D G3DSA:3.30.70.250 720 783 1.2E-5 T 26-04-2016 RGE_RS15145 804db93dd3f5a0ad98492fa937ca65cb 1597 SUPERFAMILY SSF55048 720 783 2.75E-6 T 26-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 RGE_RS15895 ddcb5a0b7f1882f47b785e7cbc0a5252 633 SUPERFAMILY SSF56801 3 627 4.06E-159 T 26-04-2016 RGE_RS15895 ddcb5a0b7f1882f47b785e7cbc0a5252 633 Pfam PF13193 AMP-binding enzyme C-terminal domain 512 595 1.8E-23 T 26-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RGE_RS15895 ddcb5a0b7f1882f47b785e7cbc0a5252 633 Gene3D G3DSA:2.30.38.10 414 497 1.6E-5 T 26-04-2016 RGE_RS15895 ddcb5a0b7f1882f47b785e7cbc0a5252 633 Pfam PF00501 AMP-binding enzyme 61 503 6.6E-82 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS15895 ddcb5a0b7f1882f47b785e7cbc0a5252 633 PANTHER PTHR24095 1 629 0.0 T 26-04-2016 RGE_RS15895 ddcb5a0b7f1882f47b785e7cbc0a5252 633 Gene3D G3DSA:3.40.50.980 244 393 5.6E-28 T 26-04-2016 RGE_RS15895 ddcb5a0b7f1882f47b785e7cbc0a5252 633 Gene3D G3DSA:3.40.50.980 55 243 3.1E-36 T 26-04-2016 RGE_RS15895 ddcb5a0b7f1882f47b785e7cbc0a5252 633 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 4 58 9.7E-23 T 26-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 RGE_RS15895 ddcb5a0b7f1882f47b785e7cbc0a5252 633 TIGRFAM TIGR02316 propion_prpE: propionate--CoA ligase 3 627 0.0 T 26-04-2016 IPR012694 Propionate--CoA ligase GO:0019629|GO:0050218 KEGG: 00640+6.2.1.17|MetaCyc: PWY-3941|MetaCyc: PWY-5104|MetaCyc: PWY-5747|UniPathway: UPA00946 RGE_RS15895 ddcb5a0b7f1882f47b785e7cbc0a5252 633 Gene3D G3DSA:3.30.300.30 498 608 4.9E-25 T 26-04-2016 RGE_RS15895 ddcb5a0b7f1882f47b785e7cbc0a5252 633 PANTHER PTHR24095:SF165 1 629 0.0 T 26-04-2016 RGE_RS03460 de134d91e812dd5bc3b404b1a47b3d03 521 PANTHER PTHR32089:SF48 14 517 1.1E-120 T 26-04-2016 RGE_RS03460 de134d91e812dd5bc3b404b1a47b3d03 521 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 513 2.4E-59 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03460 de134d91e812dd5bc3b404b1a47b3d03 521 SUPERFAMILY SSF58104 247 515 1.44E-66 T 26-04-2016 RGE_RS03460 de134d91e812dd5bc3b404b1a47b3d03 521 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 183 3.5E-13 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS03460 de134d91e812dd5bc3b404b1a47b3d03 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 1.7E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03460 de134d91e812dd5bc3b404b1a47b3d03 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 1.7E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03460 de134d91e812dd5bc3b404b1a47b3d03 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 1.7E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03460 de134d91e812dd5bc3b404b1a47b3d03 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 1.7E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03460 de134d91e812dd5bc3b404b1a47b3d03 521 SMART SM00283 267 514 9.6E-92 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03460 de134d91e812dd5bc3b404b1a47b3d03 521 PANTHER PTHR32089 14 517 1.1E-120 T 26-04-2016 RGE_RS03460 de134d91e812dd5bc3b404b1a47b3d03 521 Gene3D G3DSA:1.10.287.950 282 486 2.7E-58 T 26-04-2016 RGE_RS11125 926f2fe222ff44804f20d9d769864f79 219 PANTHER PTHR24567 28 201 2.5E-27 T 26-04-2016 RGE_RS11125 926f2fe222ff44804f20d9d769864f79 219 Gene3D G3DSA:1.10.10.10 136 214 3.3E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11125 926f2fe222ff44804f20d9d769864f79 219 Pfam PF13545 Crp-like helix-turn-helix domain 140 214 1.5E-16 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS11125 926f2fe222ff44804f20d9d769864f79 219 SUPERFAMILY SSF46785 137 214 4.21E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11125 926f2fe222ff44804f20d9d769864f79 219 Gene3D G3DSA:2.60.120.10 25 134 5.4E-26 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS11125 926f2fe222ff44804f20d9d769864f79 219 Pfam PF00027 Cyclic nucleotide-binding domain 28 105 1.2E-9 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS11125 926f2fe222ff44804f20d9d769864f79 219 SMART SM00100 7 119 0.002 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS11125 926f2fe222ff44804f20d9d769864f79 219 SMART SM00419 158 207 5.6E-9 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS11125 926f2fe222ff44804f20d9d769864f79 219 SUPERFAMILY SSF51206 25 134 1.44E-23 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS17305 e2e49b5e6675f0c8fcf9b300d9600896 212 SUPERFAMILY SSF52972 1 206 3.92E-58 T 26-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RGE_RS17305 e2e49b5e6675f0c8fcf9b300d9600896 212 Gene3D G3DSA:3.90.950.10 1 207 2.7E-66 T 26-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RGE_RS17305 e2e49b5e6675f0c8fcf9b300d9600896 212 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 1 207 40.09 T 26-04-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RGE_RS17305 e2e49b5e6675f0c8fcf9b300d9600896 212 Pfam PF01725 Ham1 family 3 202 1.5E-46 T 26-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RGE_RS17305 e2e49b5e6675f0c8fcf9b300d9600896 212 PANTHER PTHR11067 1 89 5.6E-61 T 26-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RGE_RS17305 e2e49b5e6675f0c8fcf9b300d9600896 212 PANTHER PTHR11067 107 212 5.6E-61 T 26-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RGE_RS17305 e2e49b5e6675f0c8fcf9b300d9600896 212 PANTHER PTHR11067:SF9 1 89 5.6E-61 T 26-04-2016 RGE_RS17305 e2e49b5e6675f0c8fcf9b300d9600896 212 PANTHER PTHR11067:SF9 107 212 5.6E-61 T 26-04-2016 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 Gene3D G3DSA:1.20.120.160 16 154 2.0E-41 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 Pfam PF01584 CheW-like domain 583 712 1.8E-25 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 SUPERFAMILY SSF50341 577 710 4.05E-32 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 Gene3D G3DSA:1.10.287.560 330 394 3.5E-22 T 26-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 Gene3D G3DSA:2.40.50.180 601 665 1.3E-10 T 26-04-2016 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 441 577 2.4E-16 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 PANTHER PTHR22617 1 712 4.6E-237 T 26-04-2016 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 PANTHER PTHR22617:SF20 1 712 4.6E-237 T 26-04-2016 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 SUPERFAMILY SSF55874 395 576 4.58E-38 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 SMART SM00073 17 114 2.2E-26 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 Gene3D G3DSA:2.30.30.40 666 710 1.0E-24 T 26-04-2016 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 Gene3D G3DSA:2.30.30.40 578 599 1.0E-24 T 26-04-2016 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 Pfam PF01627 Hpt domain 20 112 1.4E-19 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 SUPERFAMILY SSF47226 17 135 6.83E-33 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 SUPERFAMILY SSF47384 331 394 8.24E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 SMART SM00260 570 710 4.7E-29 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 330 393 7.6E-19 T 26-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 SMART SM00387 438 578 8.4E-26 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 Gene3D G3DSA:3.30.565.10 395 577 7.0E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 SMART SM01231 330 393 7.1E-21 T 26-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 PRINTS PR00344 Bacterial sensor protein C-terminal signature 538 556 1.9E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 575 1.9E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 PRINTS PR00344 Bacterial sensor protein C-terminal signature 522 532 1.9E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19215 d5642fa6ba16f58d02d7d678b20e8982 715 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 497 1.9E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS16820 5bbbf8a9018688cf466c50158153a9e8 210 SUPERFAMILY SSF50475 6 210 3.93E-67 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS16820 5bbbf8a9018688cf466c50158153a9e8 210 PIRSF PIRSF000190 1 210 4.6E-76 T 26-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RGE_RS16820 5bbbf8a9018688cf466c50158153a9e8 210 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 180 193 - T 26-04-2016 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RGE_RS16820 5bbbf8a9018688cf466c50158153a9e8 210 PANTHER PTHR10851:SF0 1 210 4.6E-104 T 26-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RGE_RS16820 5bbbf8a9018688cf466c50158153a9e8 210 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 170 210 6.9E-19 T 26-04-2016 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RGE_RS16820 5bbbf8a9018688cf466c50158153a9e8 210 Gene3D G3DSA:2.30.110.10 15 210 4.6E-83 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS16820 5bbbf8a9018688cf466c50158153a9e8 210 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 9 210 39.047 T 26-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RGE_RS16820 5bbbf8a9018688cf466c50158153a9e8 210 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 32 116 1.9E-26 T 26-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RGE_RS16820 5bbbf8a9018688cf466c50158153a9e8 210 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 1 210 2.3E-83 T 26-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RGE_RS16820 5bbbf8a9018688cf466c50158153a9e8 210 PANTHER PTHR10851 1 210 4.6E-104 T 26-04-2016 RGE_RS21645 3ed00e009b9c4b1959c09c9cbdd6b24f 105 Pfam PF08895 Domain of unknown function (DUF1840) 1 103 6.4E-28 T 26-04-2016 IPR014991 Protein of unknown function DUF1840 RGE_RS22495 3fb32cf0512115b7e9d025953ce377e2 555 Gene3D G3DSA:2.30.38.10 384 458 8.9E-29 T 26-04-2016 RGE_RS22495 3fb32cf0512115b7e9d025953ce377e2 555 SUPERFAMILY SSF56801 23 554 2.62E-151 T 26-04-2016 RGE_RS22495 3fb32cf0512115b7e9d025953ce377e2 555 Pfam PF00501 AMP-binding enzyme 30 464 6.5E-106 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS22495 3fb32cf0512115b7e9d025953ce377e2 555 Pfam PF13193 AMP-binding enzyme C-terminal domain 473 547 1.6E-16 T 26-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RGE_RS22495 3fb32cf0512115b7e9d025953ce377e2 555 PANTHER PTHR24096 181 554 1.3E-165 T 26-04-2016 RGE_RS22495 3fb32cf0512115b7e9d025953ce377e2 555 PANTHER PTHR24096 24 154 1.3E-165 T 26-04-2016 RGE_RS22495 3fb32cf0512115b7e9d025953ce377e2 555 Gene3D G3DSA:3.40.50.980 215 383 6.8E-41 T 26-04-2016 RGE_RS22495 3fb32cf0512115b7e9d025953ce377e2 555 Gene3D G3DSA:3.30.300.30 459 554 8.8E-28 T 26-04-2016 RGE_RS22495 3fb32cf0512115b7e9d025953ce377e2 555 ProSitePatterns PS00455 Putative AMP-binding domain signature. 210 221 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS22495 3fb32cf0512115b7e9d025953ce377e2 555 Gene3D G3DSA:3.40.50.980 25 151 1.7E-37 T 26-04-2016 RGE_RS22495 3fb32cf0512115b7e9d025953ce377e2 555 Gene3D G3DSA:3.40.50.980 184 214 1.7E-37 T 26-04-2016 RGE_RS12325 b8fee20687df2a5193122fbb77657808 442 SUPERFAMILY SSF53383 12 437 1.67E-114 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS12325 b8fee20687df2a5193122fbb77657808 442 Gene3D G3DSA:3.40.640.10 65 343 2.8E-81 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS12325 b8fee20687df2a5193122fbb77657808 442 Gene3D G3DSA:3.90.1150.10 344 438 6.0E-35 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS12325 b8fee20687df2a5193122fbb77657808 442 Gene3D G3DSA:3.90.1150.10 12 64 6.0E-35 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS12325 b8fee20687df2a5193122fbb77657808 442 PANTHER PTHR11986:SF80 14 439 2.2E-190 T 26-04-2016 RGE_RS12325 b8fee20687df2a5193122fbb77657808 442 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 251 288 - T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS12325 b8fee20687df2a5193122fbb77657808 442 Pfam PF00202 Aminotransferase class-III 31 437 3.2E-102 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS12325 b8fee20687df2a5193122fbb77657808 442 PANTHER PTHR11986 14 439 2.2E-190 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS22920 a1253b7853d9641315e805fbb6bcb96c 189 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 23 171 1.8E-41 T 26-04-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RGE_RS22920 a1253b7853d9641315e805fbb6bcb96c 189 PANTHER PTHR21485 18 169 6.8E-44 T 26-04-2016 RGE_RS22920 a1253b7853d9641315e805fbb6bcb96c 189 Gene3D G3DSA:3.40.50.1000 18 177 2.3E-41 T 26-04-2016 IPR023214 HAD-like domain RGE_RS22920 a1253b7853d9641315e805fbb6bcb96c 189 SUPERFAMILY SSF56784 20 176 1.58E-39 T 26-04-2016 IPR023214 HAD-like domain RGE_RS22920 a1253b7853d9641315e805fbb6bcb96c 189 PIRSF PIRSF006118 10 183 2.3E-57 T 26-04-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RGE_RS22920 a1253b7853d9641315e805fbb6bcb96c 189 Pfam PF08282 haloacid dehalogenase-like hydrolase 96 161 9.3E-9 T 26-04-2016 IPR023214 HAD-like domain RGE_RS08465 e11e4daad2516866937a964ea9426e56 139 Pfam PF00460 Flagella basal body rod protein 7 34 6.9E-10 T 26-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RGE_RS08465 e11e4daad2516866937a964ea9426e56 139 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 138 5.0E-52 T 26-04-2016 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 RGE_RS08465 e11e4daad2516866937a964ea9426e56 139 PANTHER PTHR30435 1 138 6.6E-63 T 26-04-2016 RGE_RS08465 e11e4daad2516866937a964ea9426e56 139 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 91 136 8.8E-14 T 26-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RGE_RS08465 e11e4daad2516866937a964ea9426e56 139 PANTHER PTHR30435:SF2 1 138 6.6E-63 T 26-04-2016 RGE_RS08465 e11e4daad2516866937a964ea9426e56 139 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 26-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Gene3D G3DSA:1.10.287.130 526 593 5.4E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SUPERFAMILY SSF55785 242 365 1.5E-17 T 26-04-2016 IPR000014 PAS domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SMART SM00086 203 245 3.1E-4 T 26-04-2016 IPR001610 PAC motif RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SMART SM00086 76 117 220.0 T 26-04-2016 IPR001610 PAC motif RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SMART SM00086 328 368 24.0 T 26-04-2016 IPR001610 PAC motif RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SUPERFAMILY SSF52172 773 900 1.57E-22 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SUPERFAMILY SSF47226 1025 1038 4.45E-9 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SUPERFAMILY SSF47226 1080 1150 4.45E-9 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 376 501 1.1E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 255 375 1.5E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 180 252 9.7E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 PANTHER PTHR24423 823 912 1.7E-184 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SMART SM00091 129 197 59.0 T 26-04-2016 IPR000014 PAS domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SMART SM00091 2 71 23.0 T 26-04-2016 IPR000014 PAS domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SMART SM00091 257 325 0.42 T 26-04-2016 IPR000014 PAS domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SMART SM00091 380 446 3.8E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SUPERFAMILY SSF55874 586 754 4.06E-42 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 PANTHER PTHR24423:SF486 530 762 1.7E-184 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SUPERFAMILY SSF47384 519 599 8.44E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Gene3D G3DSA:3.30.450.20 112 246 6.4E-21 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SMART SM00387 643 759 2.1E-35 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SUPERFAMILY SSF55785 135 248 7.68E-16 T 26-04-2016 IPR000014 PAS domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Pfam PF08447 PAS fold 172 239 9.5E-13 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 PRINTS PR00344 Bacterial sensor protein C-terminal signature 719 737 6.8E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 PRINTS PR00344 Bacterial sensor protein C-terminal signature 702 712 6.8E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 PRINTS PR00344 Bacterial sensor protein C-terminal signature 743 756 6.8E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 PRINTS PR00344 Bacterial sensor protein C-terminal signature 684 698 6.8E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Pfam PF13426 PAS domain 275 365 2.0E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Pfam PF00072 Response regulator receiver domain 778 895 2.8E-14 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Pfam PF00072 Response regulator receiver domain 932 1042 1.8E-28 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SMART SM00448 775 895 8.9E-18 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SMART SM00448 930 1042 5.1E-34 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Gene3D G3DSA:1.20.120.160 1091 1158 1.2E-4 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Gene3D G3DSA:3.30.450.20 369 494 7.4E-23 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SUPERFAMILY SSF55785 13 123 1.92E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 PANTHER PTHR24423:SF486 110 378 1.7E-184 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 PANTHER PTHR24423:SF486 929 1047 1.7E-184 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 PANTHER PTHR24423:SF486 823 912 1.7E-184 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Gene3D G3DSA:3.30.450.20 247 365 1.3E-17 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Gene3D G3DSA:3.30.450.20 4 111 1.2E-7 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 643 758 4.7E-24 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SUPERFAMILY SSF55785 365 492 3.66E-20 T 26-04-2016 IPR000014 PAS domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 PANTHER PTHR24423 530 762 1.7E-184 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 PANTHER PTHR24423 110 378 1.7E-184 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 PANTHER PTHR24423 929 1047 1.7E-184 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Pfam PF08448 PAS fold 389 496 2.1E-10 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SUPERFAMILY SSF52172 929 1047 1.71E-39 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Gene3D G3DSA:3.40.50.2300 774 899 1.0E-20 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Gene3D G3DSA:3.30.565.10 597 759 5.8E-42 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Gene3D G3DSA:3.40.50.2300 929 1048 2.2E-41 T 26-04-2016 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 Pfam PF00512 His Kinase A (phospho-acceptor) domain 532 597 1.7E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11335 e0c660cdcd711d7551449427319684a5 1180 SMART SM00388 532 597 9.4E-22 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS12110 d8a4bee3a09df6e7acbd4a1324428389 195 PIRSF PIRSF004682 3 189 1.9E-51 T 26-04-2016 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 RGE_RS12110 d8a4bee3a09df6e7acbd4a1324428389 195 PANTHER PTHR23133:SF3 9 155 3.0E-34 T 26-04-2016 RGE_RS12110 d8a4bee3a09df6e7acbd4a1324428389 195 SUPERFAMILY SSF56784 10 186 3.37E-40 T 26-04-2016 IPR023214 HAD-like domain RGE_RS12110 d8a4bee3a09df6e7acbd4a1324428389 195 PANTHER PTHR23133 9 155 3.0E-34 T 26-04-2016 RGE_RS12110 d8a4bee3a09df6e7acbd4a1324428389 195 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 10 154 2.2E-38 T 26-04-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 RGE_RS12110 d8a4bee3a09df6e7acbd4a1324428389 195 Gene3D G3DSA:3.40.50.1000 7 183 4.4E-45 T 26-04-2016 IPR023214 HAD-like domain RGE_RS12110 d8a4bee3a09df6e7acbd4a1324428389 195 Pfam PF13242 HAD-hyrolase-like 111 162 6.6E-13 T 26-04-2016 RGE_RS12110 d8a4bee3a09df6e7acbd4a1324428389 195 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 11 158 2.2E-29 T 26-04-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA RGE_RS00740 ca822d632e3d1ff5b0e52172bce9e7dd 338 SUPERFAMILY SSF51556 52 336 4.82E-79 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS00740 ca822d632e3d1ff5b0e52172bce9e7dd 338 PANTHER PTHR21240:SF11 31 338 6.8E-122 T 26-04-2016 RGE_RS00740 ca822d632e3d1ff5b0e52172bce9e7dd 338 Gene3D G3DSA:3.20.20.140 17 336 3.0E-86 T 26-04-2016 RGE_RS00740 ca822d632e3d1ff5b0e52172bce9e7dd 338 PANTHER PTHR21240 31 338 6.8E-122 T 26-04-2016 RGE_RS00740 ca822d632e3d1ff5b0e52172bce9e7dd 338 Pfam PF04909 Amidohydrolase 62 335 2.5E-47 T 26-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RGE_RS19620 2d7a10c1e7299085106e1843e4d3be6c 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 74 2.6E-9 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS19620 2d7a10c1e7299085106e1843e4d3be6c 223 Gene3D G3DSA:1.10.357.10 23 192 2.9E-17 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS19620 2d7a10c1e7299085106e1843e4d3be6c 223 SUPERFAMILY SSF46689 25 83 1.55E-11 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS19620 2d7a10c1e7299085106e1843e4d3be6c 223 PANTHER PTHR30055:SF40 10 210 1.3E-18 T 26-04-2016 RGE_RS19620 2d7a10c1e7299085106e1843e4d3be6c 223 PANTHER PTHR30055 10 210 1.3E-18 T 26-04-2016 RGE_RS14885 93ac95935ea9f0e21d20deccc63af5bc 560 Pfam PF12729 Four helix bundle sensory module for signal transduction 8 169 1.2E-9 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS14885 93ac95935ea9f0e21d20deccc63af5bc 560 Pfam PF00672 HAMP domain 193 260 2.3E-11 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS14885 93ac95935ea9f0e21d20deccc63af5bc 560 PANTHER PTHR32089:SF63 157 515 3.4E-143 T 26-04-2016 RGE_RS14885 93ac95935ea9f0e21d20deccc63af5bc 560 SUPERFAMILY SSF58104 233 513 8.89E-70 T 26-04-2016 RGE_RS14885 93ac95935ea9f0e21d20deccc63af5bc 560 Gene3D G3DSA:1.10.287.950 279 484 9.4E-60 T 26-04-2016 RGE_RS14885 93ac95935ea9f0e21d20deccc63af5bc 560 SMART SM00304 212 264 3.2E-8 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS14885 93ac95935ea9f0e21d20deccc63af5bc 560 PANTHER PTHR32089 157 515 3.4E-143 T 26-04-2016 RGE_RS14885 93ac95935ea9f0e21d20deccc63af5bc 560 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 511 2.4E-59 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS14885 93ac95935ea9f0e21d20deccc63af5bc 560 SMART SM00283 265 512 9.6E-90 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS10460 b7d4c7b73874a4fa05e21522d4cc9a48 558 SUPERFAMILY SSF56281 276 532 6.36E-57 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS10460 b7d4c7b73874a4fa05e21522d4cc9a48 558 Pfam PF00753 Metallo-beta-lactamase superfamily 298 461 1.4E-23 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS10460 b7d4c7b73874a4fa05e21522d4cc9a48 558 Gene3D G3DSA:3.60.15.10 275 491 1.8E-53 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS10460 b7d4c7b73874a4fa05e21522d4cc9a48 558 SUPERFAMILY SSF55811 87 98 1.86E-13 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS10460 b7d4c7b73874a4fa05e21522d4cc9a48 558 SUPERFAMILY SSF55811 136 194 1.86E-13 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS10460 b7d4c7b73874a4fa05e21522d4cc9a48 558 SUPERFAMILY SSF55811 9 60 1.86E-13 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS10460 b7d4c7b73874a4fa05e21522d4cc9a48 558 Gene3D G3DSA:3.90.79.10 4 102 5.5E-17 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS10460 b7d4c7b73874a4fa05e21522d4cc9a48 558 Gene3D G3DSA:3.90.79.10 140 193 5.5E-17 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS10460 b7d4c7b73874a4fa05e21522d4cc9a48 558 PANTHER PTHR23131 275 546 6.6E-66 T 26-04-2016 RGE_RS10460 b7d4c7b73874a4fa05e21522d4cc9a48 558 PANTHER PTHR23131 181 253 6.6E-66 T 26-04-2016 RGE_RS10460 b7d4c7b73874a4fa05e21522d4cc9a48 558 Pfam PF00293 NUDIX domain 11 189 9.0E-7 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS10460 b7d4c7b73874a4fa05e21522d4cc9a48 558 SMART SM00849 298 461 1.8E-33 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS14915 a4f4a725578a390b8428223ffbfca136 161 Gene3D G3DSA:1.10.10.10 96 156 2.4E-17 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14915 a4f4a725578a390b8428223ffbfca136 161 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 2 153 5.0E-22 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14915 a4f4a725578a390b8428223ffbfca136 161 PANTHER PTHR30173 4 157 5.4E-40 T 26-04-2016 RGE_RS14915 a4f4a725578a390b8428223ffbfca136 161 Pfam PF04542 Sigma-70 region 2 2 67 6.7E-9 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14915 a4f4a725578a390b8428223ffbfca136 161 SUPERFAMILY SSF88946 2 85 3.14E-12 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14915 a4f4a725578a390b8428223ffbfca136 161 PANTHER PTHR30173:SF30 4 157 5.4E-40 T 26-04-2016 RGE_RS14915 a4f4a725578a390b8428223ffbfca136 161 Gene3D G3DSA:1.10.1740.10 2 93 1.4E-12 T 26-04-2016 RGE_RS14915 a4f4a725578a390b8428223ffbfca136 161 SUPERFAMILY SSF88659 95 156 1.44E-15 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14915 a4f4a725578a390b8428223ffbfca136 161 Pfam PF08281 Sigma-70, region 4 103 154 2.6E-16 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS04885 e227951cdda2dfcea4f8cf64da2998d8 224 Gene3D G3DSA:2.30.110.10 33 158 2.0E-19 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS04885 e227951cdda2dfcea4f8cf64da2998d8 224 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 47 134 1.6E-9 T 26-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RGE_RS04885 e227951cdda2dfcea4f8cf64da2998d8 224 PANTHER PTHR30212:SF4 22 195 1.0E-38 T 26-04-2016 RGE_RS04885 e227951cdda2dfcea4f8cf64da2998d8 224 PANTHER PTHR30212 22 195 1.0E-38 T 26-04-2016 RGE_RS04885 e227951cdda2dfcea4f8cf64da2998d8 224 SUPERFAMILY SSF50475 21 184 1.68E-15 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS04885 e227951cdda2dfcea4f8cf64da2998d8 224 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 22 208 3.0E-58 T 26-04-2016 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent RGE_RS21245 43efd5548c71d1f10b6e6e27218aad84 280 PANTHER PTHR30399 46 272 1.3E-38 T 26-04-2016 RGE_RS21245 43efd5548c71d1f10b6e6e27218aad84 280 Pfam PF01863 Protein of unknown function DUF45 66 273 1.4E-54 T 26-04-2016 IPR002725 Protein of unknown function DUF45 RGE_RS13885 32ec196f81c663f6a9ba061c39167117 237 PANTHER PTHR24220 3 203 4.5E-78 T 26-04-2016 RGE_RS13885 32ec196f81c663f6a9ba061c39167117 237 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS13885 32ec196f81c663f6a9ba061c39167117 237 SMART SM00382 18 207 5.8E-13 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS13885 32ec196f81c663f6a9ba061c39167117 237 Gene3D G3DSA:3.40.50.300 2 223 1.8E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13885 32ec196f81c663f6a9ba061c39167117 237 PANTHER PTHR24220:SF483 3 203 4.5E-78 T 26-04-2016 RGE_RS13885 32ec196f81c663f6a9ba061c39167117 237 Pfam PF00005 ABC transporter 11 158 8.8E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS13885 32ec196f81c663f6a9ba061c39167117 237 SUPERFAMILY SSF52540 4 221 6.14E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00480 3fb0a18cc64a1ed236fbe28082d3fb16 344 Pfam PF02547 Queuosine biosynthesis protein 6 340 1.1E-124 T 26-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS00480 3fb0a18cc64a1ed236fbe28082d3fb16 344 Gene3D G3DSA:3.40.1780.10 4 63 9.1E-93 T 26-04-2016 RGE_RS00480 3fb0a18cc64a1ed236fbe28082d3fb16 344 Gene3D G3DSA:3.40.1780.10 179 340 9.1E-93 T 26-04-2016 RGE_RS00480 3fb0a18cc64a1ed236fbe28082d3fb16 344 SUPERFAMILY SSF111337 5 340 1.7E-127 T 26-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS00480 3fb0a18cc64a1ed236fbe28082d3fb16 344 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 4 341 44.789 T 26-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS00480 3fb0a18cc64a1ed236fbe28082d3fb16 344 Gene3D G3DSA:2.40.10.240 65 136 6.5E-15 T 26-04-2016 RGE_RS00480 3fb0a18cc64a1ed236fbe28082d3fb16 344 PANTHER PTHR30307 5 344 1.8E-155 T 26-04-2016 RGE_RS00480 3fb0a18cc64a1ed236fbe28082d3fb16 344 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 5 340 2.3E-119 T 26-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS00480 3fb0a18cc64a1ed236fbe28082d3fb16 344 PANTHER PTHR30307:SF0 5 344 1.8E-155 T 26-04-2016 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 339 345 - T 26-04-2016 IPR018303 P-type ATPase, phosphorylation site RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 SUPERFAMILY SSF81653 129 235 2.88E-26 T 26-04-2016 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 SUPERFAMILY SSF56784 335 355 5.32E-56 T 26-04-2016 IPR023214 HAD-like domain RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 SUPERFAMILY SSF56784 489 736 5.32E-56 T 26-04-2016 IPR023214 HAD-like domain RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 Gene3D G3DSA:3.40.1110.10 327 541 1.0E-48 T 26-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 Gene3D G3DSA:2.70.150.10 27 68 3.3E-37 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 Gene3D G3DSA:2.70.150.10 123 235 3.3E-37 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 607 713 3.7E-30 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 96 355 3.9E-40 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 PANTHER PTHR24093 5 900 8.8E-297 T 26-04-2016 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 Pfam PF00690 Cation transporter/ATPase, N-terminus 17 85 1.2E-22 T 26-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 SUPERFAMILY SSF81660 344 537 2.62E-43 T 26-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 Pfam PF00689 Cation transporting ATPase, C-terminus 720 892 4.7E-42 T 26-04-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 SMART SM00831 16 90 1.7E-32 T 26-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 534 545 3.8E-38 T 26-04-2016 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 636 655 3.8E-38 T 26-04-2016 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 337 351 3.8E-38 T 26-04-2016 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 660 672 3.8E-38 T 26-04-2016 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 556 566 3.8E-38 T 26-04-2016 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 175 189 3.8E-38 T 26-04-2016 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 Pfam PF00122 E1-E2 ATPase 95 328 4.4E-63 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 SUPERFAMILY SSF81665 238 331 1.7E-115 T 26-04-2016 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 SUPERFAMILY SSF81665 16 128 1.7E-115 T 26-04-2016 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 SUPERFAMILY SSF81665 686 895 1.7E-115 T 26-04-2016 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 636 652 2.6E-12 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 668 693 2.6E-12 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 608 624 2.6E-12 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 492 510 2.6E-12 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 Gene3D G3DSA:1.20.1110.10 605 894 9.0E-106 T 26-04-2016 IPR023298 P-type ATPase, transmembrane domain RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 Gene3D G3DSA:1.20.1110.10 69 122 9.0E-106 T 26-04-2016 IPR023298 P-type ATPase, transmembrane domain RGE_RS10690 40a182187e4e823988b4e4dbc3fb0399 907 Pfam PF00702 haloacid dehalogenase-like hydrolase 334 650 3.4E-20 T 26-04-2016 RGE_RS00105 b120135a050ec58b0ad59a9f194eb68e 434 Gene3D G3DSA:3.40.50.10180 15 252 6.4E-96 T 26-04-2016 RGE_RS00105 b120135a050ec58b0ad59a9f194eb68e 434 SUPERFAMILY SSF82544 11 433 4.71E-145 T 26-04-2016 RGE_RS00105 b120135a050ec58b0ad59a9f194eb68e 434 Pfam PF13660 Domain of unknown function (DUF4147) 15 242 3.1E-78 T 26-04-2016 IPR025286 MOFRL-associated domain RGE_RS00105 b120135a050ec58b0ad59a9f194eb68e 434 Gene3D G3DSA:3.40.1480.10 253 433 1.0E-69 T 26-04-2016 IPR007835 MOFRL domain RGE_RS00105 b120135a050ec58b0ad59a9f194eb68e 434 PANTHER PTHR12227:SF0 10 433 1.5E-132 T 26-04-2016 RGE_RS00105 b120135a050ec58b0ad59a9f194eb68e 434 PANTHER PTHR12227 10 433 1.5E-132 T 26-04-2016 RGE_RS00105 b120135a050ec58b0ad59a9f194eb68e 434 Pfam PF05161 MOFRL family 321 427 2.5E-34 T 26-04-2016 IPR007835 MOFRL domain RGE_RS15275 5cfb95a8fc7e14c8c1e86a04ad99d8dd 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 8.7E-17 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS15275 5cfb95a8fc7e14c8c1e86a04ad99d8dd 200 PANTHER PTHR30055 1 200 4.1E-39 T 26-04-2016 RGE_RS15275 5cfb95a8fc7e14c8c1e86a04ad99d8dd 200 Gene3D G3DSA:1.10.10.60 1 52 3.8E-21 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS15275 5cfb95a8fc7e14c8c1e86a04ad99d8dd 200 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 144 198 3.4E-8 T 26-04-2016 RGE_RS15275 5cfb95a8fc7e14c8c1e86a04ad99d8dd 200 PANTHER PTHR30055:SF76 1 200 4.1E-39 T 26-04-2016 RGE_RS15275 5cfb95a8fc7e14c8c1e86a04ad99d8dd 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.7E-9 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS15275 5cfb95a8fc7e14c8c1e86a04ad99d8dd 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.7E-9 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS15275 5cfb95a8fc7e14c8c1e86a04ad99d8dd 200 Gene3D G3DSA:1.10.357.10 53 200 3.0E-31 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS15275 5cfb95a8fc7e14c8c1e86a04ad99d8dd 200 SUPERFAMILY SSF46689 1 70 3.84E-17 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 SUPERFAMILY SSF160996 197 342 2.22E-10 T 26-04-2016 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 394 5.3E-86 T 26-04-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 SUPERFAMILY SSF51905 341 399 6.32E-42 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 SUPERFAMILY SSF51905 6 192 6.32E-42 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 27 401 1.9E-164 T 26-04-2016 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 PANTHER PTHR10617 334 403 1.3E-47 T 26-04-2016 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 PANTHER PTHR10617 1 302 1.3E-47 T 26-04-2016 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 298 1.1E-5 T 26-04-2016 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 1.1E-5 T 26-04-2016 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 PANTHER PTHR10617:SF103 334 403 1.3E-47 T 26-04-2016 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 PANTHER PTHR10617:SF103 1 302 1.3E-47 T 26-04-2016 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 Gene3D G3DSA:3.50.50.60 343 397 6.6E-36 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 Gene3D G3DSA:3.50.50.60 6 190 6.6E-36 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11920 d68c4353af8357cfa2d4a4503ccd7897 403 Pfam PF03486 HI0933-like protein 6 395 6.7E-105 T 26-04-2016 RGE_RS22510 67072ed8a8daa731ea64fcdae14ee659 376 SUPERFAMILY SSF51735 137 324 1.21E-34 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22510 67072ed8a8daa731ea64fcdae14ee659 376 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 135 1.7E-41 T 26-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RGE_RS22510 67072ed8a8daa731ea64fcdae14ee659 376 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 374 1.7E-69 T 26-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RGE_RS22510 67072ed8a8daa731ea64fcdae14ee659 376 PANTHER PTHR10160 1 373 1.1E-154 T 26-04-2016 RGE_RS22510 67072ed8a8daa731ea64fcdae14ee659 376 Gene3D G3DSA:3.40.50.1770 199 373 4.1E-38 T 26-04-2016 RGE_RS22510 67072ed8a8daa731ea64fcdae14ee659 376 SMART SM01003 4 136 5.2E-65 T 26-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RGE_RS22510 67072ed8a8daa731ea64fcdae14ee659 376 Gene3D G3DSA:3.40.50.720 169 198 1.9E-5 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22510 67072ed8a8daa731ea64fcdae14ee659 376 Gene3D G3DSA:3.40.50.1770 1 168 4.1E-54 T 26-04-2016 RGE_RS22510 67072ed8a8daa731ea64fcdae14ee659 376 SUPERFAMILY SSF52283 1 167 2.13E-50 T 26-04-2016 RGE_RS22510 67072ed8a8daa731ea64fcdae14ee659 376 SMART SM01002 145 319 1.5E-81 T 26-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 Gene3D G3DSA:3.50.30.10 135 272 2.0E-42 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 SUPERFAMILY SSF47831 27 144 2.09E-30 T 26-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 PANTHER PTHR22931 34 571 8.5E-153 T 26-04-2016 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 468 486 - T 26-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 200 211 - T 26-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 6 574 1.2E-154 T 26-04-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 Pfam PF00391 PEP-utilising enzyme, mobile domain 169 241 1.0E-22 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 PANTHER PTHR22931:SF28 34 571 8.5E-153 T 26-04-2016 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 Gene3D G3DSA:1.10.274.10 27 134 2.0E-33 T 26-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 SUPERFAMILY SSF52009 128 260 2.62E-30 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 SUPERFAMILY SSF51621 265 566 4.97E-99 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 267 561 4.6E-105 T 26-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 Pfam PF05524 PEP-utilising enzyme, N-terminal 7 129 4.1E-30 T 26-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 Gene3D G3DSA:3.20.20.60 273 578 3.5E-98 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 PIRSF PIRSF000732 1 592 6.5E-198 T 26-04-2016 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 485 500 1.74304E-21 T 26-04-2016 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 468 483 1.74304E-21 T 26-04-2016 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 309 328 1.74304E-21 T 26-04-2016 RGE_RS21485 1f7c1fce2044b692e204f0715e32b9aa 593 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 521 533 1.74304E-21 T 26-04-2016 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 PIRSF PIRSF000445 1 431 6.5E-141 T 26-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 419 28.379 T 26-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 PANTHER PTHR21089:SF3 276 363 3.7E-107 T 26-04-2016 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 PANTHER PTHR21089:SF3 88 260 3.7E-107 T 26-04-2016 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 160 3.3E-47 T 26-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 Gene3D G3DSA:3.40.50.720 188 358 1.6E-35 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 SUPERFAMILY SSF69075 321 419 4.18E-20 T 26-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 103 126 - T 26-04-2016 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 3 419 2.5E-118 T 26-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 SUPERFAMILY SSF51735 167 318 4.14E-31 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 324 419 1.9E-25 T 26-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 SUPERFAMILY SSF69742 3 162 1.44E-42 T 26-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 PANTHER PTHR21089 276 363 3.7E-107 T 26-04-2016 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 PANTHER PTHR21089 88 260 3.7E-107 T 26-04-2016 RGE_RS20685 4d700b1ff2cc0cea4a30c7a72b0bd8c8 431 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 176 310 1.1E-43 T 26-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 SMART SM00388 259 323 3.0E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 SUPERFAMILY SSF158472 206 254 2.09E-7 T 26-04-2016 RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 369 478 1.1E-20 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 PANTHER PTHR24423 33 478 3.1E-115 T 26-04-2016 RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 SMART SM00387 369 481 5.7E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 Gene3D G3DSA:1.10.287.130 253 318 5.9E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 Pfam PF00512 His Kinase A (phospho-acceptor) domain 260 321 1.7E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 Gene3D G3DSA:3.30.565.10 327 482 3.4E-39 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 459 6.5E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 420 6.5E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 434 6.5E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 PANTHER PTHR24423:SF531 33 478 3.1E-115 T 26-04-2016 RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 SUPERFAMILY SSF47384 242 321 3.34E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 Pfam PF00672 HAMP domain 188 254 1.0E-15 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 SUPERFAMILY SSF55874 313 481 1.57E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04445 b8a6f10ff3b05ce170153645896d3f52 489 SMART SM00304 206 258 1.2E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS20945 797cff837ab853334de1013a006a5066 137 SUPERFAMILY SSF53146 1 118 5.62E-34 T 26-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RGE_RS20945 797cff837ab853334de1013a006a5066 137 Gene3D G3DSA:3.30.420.130 1 118 3.7E-42 T 26-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RGE_RS20945 797cff837ab853334de1013a006a5066 137 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 9 104 4.5E-18 T 26-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RGE_RS20945 797cff837ab853334de1013a006a5066 137 PANTHER PTHR33937:SF1 1 131 3.1E-64 T 26-04-2016 RGE_RS20945 797cff837ab853334de1013a006a5066 137 TIGRFAM TIGR02663 nifX: nitrogen fixation protein NifX 1 119 1.9E-50 T 26-04-2016 IPR013480 Nitrogen fixation protein NifX GO:0009399|GO:0051188|GO:0051540 RGE_RS20945 797cff837ab853334de1013a006a5066 137 PANTHER PTHR33937 1 131 3.1E-64 T 26-04-2016 RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 PANTHER PTHR18866 598 675 0.0 T 26-04-2016 RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 PANTHER PTHR18866 1 582 0.0 T 26-04-2016 RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 8.6E-81 T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 Gene3D G3DSA:2.40.50.100 607 675 6.5E-21 T 26-04-2016 RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 Pfam PF00364 Biotin-requiring enzyme 612 674 9.9E-17 T 26-04-2016 IPR000089 Biotin/lipoyl attachment RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 SUPERFAMILY SSF56059 83 348 1.54E-70 T 26-04-2016 RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 632 649 - T 26-04-2016 IPR001882 Biotin-binding site RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 SUPERFAMILY SSF51246 331 456 2.04E-42 T 26-04-2016 IPR011054 Rudiment single hybrid motif RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 Gene3D G3DSA:3.30.470.20 203 456 1.6E-102 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 108 5.0E-45 T 26-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 Gene3D G3DSA:3.30.1490.20 130 202 3.5E-30 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 SMART SM00878 336 453 1.4E-61 T 26-04-2016 IPR005482 Biotin carboxylase, C-terminal RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 Pfam PF02785 Biotin carboxylase C-terminal domain 336 453 7.4E-38 T 26-04-2016 IPR005482 Biotin carboxylase, C-terminal RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 SUPERFAMILY SSF51230 601 675 2.88E-19 T 26-04-2016 IPR011053 Single hybrid motif RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 SUPERFAMILY SSF52440 1 113 9.35E-48 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 Gene3D G3DSA:3.40.50.20 1 129 4.3E-51 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS06065 b100e23d3410bd535a7bd710507b599e 676 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 456 1.2E-190 T 26-04-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 RGE_RS21980 90aa0e9442e634d93575bf314fb19a99 160 SUPERFAMILY SSF74653 39 132 7.85E-5 T 26-04-2016 RGE_RS21980 90aa0e9442e634d93575bf314fb19a99 160 Gene3D G3DSA:3.30.1150.10 39 133 1.6E-4 T 26-04-2016 RGE_RS18545 a481fd21a0d7ebbf609ed990c9d3966b 552 PANTHER PTHR30221:SF4 119 526 1.2E-74 T 26-04-2016 RGE_RS18545 a481fd21a0d7ebbf609ed990c9d3966b 552 Gene3D G3DSA:3.30.70.100 433 517 1.1E-7 T 26-04-2016 RGE_RS18545 a481fd21a0d7ebbf609ed990c9d3966b 552 Gene3D G3DSA:2.30.30.60 375 423 5.1E-12 T 26-04-2016 RGE_RS18545 a481fd21a0d7ebbf609ed990c9d3966b 552 SUPERFAMILY SSF82689 431 524 6.67E-13 T 26-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RGE_RS18545 a481fd21a0d7ebbf609ed990c9d3966b 552 Pfam PF00924 Mechanosensitive ion channel 316 519 1.1E-28 T 26-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RGE_RS18545 a481fd21a0d7ebbf609ed990c9d3966b 552 PANTHER PTHR30221 119 526 1.2E-74 T 26-04-2016 RGE_RS18545 a481fd21a0d7ebbf609ed990c9d3966b 552 SUPERFAMILY SSF50182 359 424 1.08E-10 T 26-04-2016 IPR010920 LSM domain RGE_RS16560 1fa56ebce75fda0e4a5eade1a496f787 78 Gene3D G3DSA:3.30.110.40 6 77 3.7E-29 T 26-04-2016 IPR001455 TusA-like domain RGE_RS16560 1fa56ebce75fda0e4a5eade1a496f787 78 Pfam PF01206 Sulfurtransferase TusA 8 76 1.1E-21 T 26-04-2016 IPR001455 TusA-like domain RGE_RS16560 1fa56ebce75fda0e4a5eade1a496f787 78 SUPERFAMILY SSF64307 5 77 4.71E-23 T 26-04-2016 IPR001455 TusA-like domain RGE_RS16560 1fa56ebce75fda0e4a5eade1a496f787 78 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 10 34 - T 26-04-2016 IPR001455 TusA-like domain RGE_RS16560 1fa56ebce75fda0e4a5eade1a496f787 78 PANTHER PTHR33279 1 78 8.5E-20 T 26-04-2016 RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 PANTHER PTHR24423 177 452 4.8E-63 T 26-04-2016 RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 Gene3D G3DSA:1.10.287.130 230 299 8.8E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 Gene3D G3DSA:3.30.565.10 310 444 1.4E-22 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 PANTHER PTHR24423 91 157 4.8E-63 T 26-04-2016 RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 447 3.6E-11 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 SUPERFAMILY SSF47384 223 302 4.71E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 PANTHER PTHR24423:SF474 91 157 4.8E-63 T 26-04-2016 RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 PANTHER PTHR24423:SF474 177 452 4.8E-63 T 26-04-2016 RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 Gene3D G3DSA:1.20.5.1040 109 186 3.0E-12 T 26-04-2016 RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 302 8.2E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 Pfam PF08521 Two-component sensor kinase N-terminal 25 159 1.8E-10 T 26-04-2016 IPR013727 Two-component sensor kinase, N-terminal RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 SMART SM00387 352 456 5.3E-21 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 SMART SM00388 238 303 2.3E-12 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14660 14e99b6fb3d3122757cc190ca63ce1e1 462 SUPERFAMILY SSF55874 293 442 1.44E-24 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS06125 994fbb1da894587234bebc7ae367de75 210 Gene3D G3DSA:3.20.20.70 3 204 2.9E-68 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS06125 994fbb1da894587234bebc7ae367de75 210 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 6 200 1.5E-41 T 26-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 RGE_RS06125 994fbb1da894587234bebc7ae367de75 210 PANTHER PTHR22854:SF6 1 209 8.7E-59 T 26-04-2016 RGE_RS06125 994fbb1da894587234bebc7ae367de75 210 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 4 205 39.924 T 26-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 RGE_RS06125 994fbb1da894587234bebc7ae367de75 210 SUPERFAMILY SSF51366 4 203 4.24E-58 T 26-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RGE_RS06125 994fbb1da894587234bebc7ae367de75 210 PANTHER PTHR22854 1 209 8.7E-59 T 26-04-2016 RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 Pfam PF00210 Ferritin-like domain 9 141 4.6E-35 T 26-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 PANTHER PTHR30295 1 154 8.4E-69 T 26-04-2016 RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 TIGRFAM TIGR00754 bfr: bacterioferritin 1 155 8.5E-43 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 PIRSF PIRSF002560 1 156 8.0E-56 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 PANTHER PTHR30295:SF9 1 154 8.4E-69 T 26-04-2016 RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 SUPERFAMILY SSF47240 1 154 5.42E-44 T 26-04-2016 IPR009078 Ferritin-like superfamily RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 Gene3D G3DSA:1.20.1260.10 1 155 2.5E-51 T 26-04-2016 IPR012347 Ferritin-related RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 PRINTS PR00601 Bacterioferritin signature 106 126 7.4E-37 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 PRINTS PR00601 Bacterioferritin signature 128 149 7.4E-37 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 PRINTS PR00601 Bacterioferritin signature 3 22 7.4E-37 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 PRINTS PR00601 Bacterioferritin signature 85 105 7.4E-37 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 PRINTS PR00601 Bacterioferritin signature 44 64 7.4E-37 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03015 dc808e74fa3472bc4aa3b0d5274eaa49 156 PRINTS PR00601 Bacterioferritin signature 23 43 7.4E-37 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 349 472 4.4E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 223 348 1.0E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 469 592 1.6E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SMART SM00091 471 537 2.0E-4 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SMART SM00091 225 292 2.9E-4 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SMART SM00091 353 420 0.0036 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Pfam PF13188 PAS domain 474 527 1.3E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Pfam PF13188 PAS domain 226 272 1.9E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Gene3D G3DSA:1.10.287.130 598 667 1.2E-12 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SMART SM00448 860 978 1.9E-35 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Pfam PF00512 His Kinase A (phospho-acceptor) domain 605 671 4.9E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Gene3D G3DSA:3.30.450.20 467 585 2.1E-15 T 26-04-2016 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Pfam PF13426 PAS domain 152 211 0.93 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SUPERFAMILY SSF47384 590 672 2.75E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 PANTHER PTHR24423 195 356 1.4E-178 T 26-04-2016 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 PANTHER PTHR24423 469 983 1.4E-178 T 26-04-2016 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Gene3D G3DSA:3.30.450.20 98 211 5.3E-8 T 26-04-2016 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 PRINTS PR00344 Bacterial sensor protein C-terminal signature 755 769 3.2E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 PRINTS PR00344 Bacterial sensor protein C-terminal signature 790 808 3.2E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 PRINTS PR00344 Bacterial sensor protein C-terminal signature 773 783 3.2E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 PRINTS PR00344 Bacterial sensor protein C-terminal signature 814 827 3.2E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 718 829 3.7E-26 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SUPERFAMILY SSF55874 660 828 1.26E-46 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Gene3D G3DSA:3.30.450.20 339 464 3.4E-18 T 26-04-2016 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Gene3D G3DSA:3.30.450.20 215 334 5.7E-9 T 26-04-2016 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SUPERFAMILY SSF55785 89 211 4.01E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SMART SM00086 543 585 36.0 T 26-04-2016 IPR001610 PAC motif RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SMART SM00086 426 466 4.1 T 26-04-2016 IPR001610 PAC motif RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SMART SM00086 171 213 0.3 T 26-04-2016 IPR001610 PAC motif RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Gene3D G3DSA:3.40.50.2300 860 983 2.6E-39 T 26-04-2016 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SUPERFAMILY SSF55785 339 464 6.98E-20 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SMART SM00388 605 671 4.9E-21 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SMART SM00387 718 830 1.9E-38 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Pfam PF00989 PAS fold 358 463 1.6E-6 T 26-04-2016 IPR013767 PAS fold GO:0006355 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Gene3D G3DSA:3.30.565.10 671 831 5.3E-47 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SUPERFAMILY SSF55785 486 592 8.38E-15 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SUPERFAMILY SSF55785 213 337 1.58E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 Pfam PF00072 Response regulator receiver domain 862 978 1.3E-24 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23430 f8b7126f50be585c0bba25f5b71c6f3e 986 SUPERFAMILY SSF52172 857 983 1.42E-36 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS13245 3d79d88a4aea5a3b6283595611acef50 214 Hamap MF_00052_B Ribonuclease HII [rnhB]. 23 202 35.597 T 26-04-2016 IPR022898 Ribonuclease HII GO:0004523 RGE_RS13245 3d79d88a4aea5a3b6283595611acef50 214 Pfam PF01351 Ribonuclease HII 25 201 1.8E-36 T 26-04-2016 IPR024567 Ribonuclease HII/HIII domain RGE_RS13245 3d79d88a4aea5a3b6283595611acef50 214 Gene3D G3DSA:3.30.420.10 23 163 1.0E-42 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS13245 3d79d88a4aea5a3b6283595611acef50 214 PANTHER PTHR10954 23 211 2.1E-69 T 26-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 RGE_RS13245 3d79d88a4aea5a3b6283595611acef50 214 SUPERFAMILY SSF53098 18 207 2.88E-64 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS01950 5ac48720297c508e2609f9fdea969214 300 Gene3D G3DSA:2.40.10.10 54 153 8.5E-18 T 26-04-2016 RGE_RS01950 5ac48720297c508e2609f9fdea969214 300 PANTHER PTHR22939 59 285 2.3E-22 T 26-04-2016 RGE_RS01950 5ac48720297c508e2609f9fdea969214 300 PANTHER PTHR22939:SF79 59 285 2.3E-22 T 26-04-2016 RGE_RS01950 5ac48720297c508e2609f9fdea969214 300 Pfam PF13365 Trypsin-like peptidase domain 86 250 5.4E-26 T 26-04-2016 RGE_RS01950 5ac48720297c508e2609f9fdea969214 300 Gene3D G3DSA:2.40.10.10 154 285 5.4E-17 T 26-04-2016 RGE_RS01950 5ac48720297c508e2609f9fdea969214 300 SUPERFAMILY SSF50494 56 285 3.32E-36 T 26-04-2016 IPR009003 Peptidase S1, PA clan RGE_RS01950 5ac48720297c508e2609f9fdea969214 300 PRINTS PR00834 HtrA/DegQ protease family signature 95 107 1.8E-5 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS01950 5ac48720297c508e2609f9fdea969214 300 PRINTS PR00834 HtrA/DegQ protease family signature 220 237 1.8E-5 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 96 722 43.881 T 26-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 Pfam PF00128 Alpha amylase, catalytic domain 270 338 1.0E-5 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 SMART SM00642 243 614 4.5E-7 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 Gene3D G3DSA:2.60.40.1180 619 720 3.1E-34 T 26-04-2016 IPR013780 Glycosyl hydrolase, all-beta RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 623 721 3.2E-19 T 26-04-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 PIRSF PIRSF000463 3 723 1.2E-277 T 26-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 Gene3D G3DSA:3.20.20.80 239 607 3.1E-88 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 PANTHER PTHR10357:SF158 47 721 0.0 T 26-04-2016 RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 PANTHER PTHR10357 47 721 0.0 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 Gene3D G3DSA:2.60.40.10 108 216 6.8E-39 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 Gene3D G3DSA:2.60.40.10 12 101 1.0E-15 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 SUPERFAMILY SSF81296 113 217 2.62E-32 T 26-04-2016 IPR014756 Immunoglobulin E-set RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 SUPERFAMILY SSF81296 13 111 1.76E-16 T 26-04-2016 IPR014756 Immunoglobulin E-set RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 SUPERFAMILY SSF51445 228 616 9.57E-112 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 104 718 6.3E-288 T 26-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 SUPERFAMILY SSF51011 619 721 1.44E-32 T 26-04-2016 RGE_RS14165 669830835dcb7b9a6ce95576606ba122 723 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 120 203 9.8E-22 T 26-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 RGE_RS13730 6583b4d6c0449c06a22bd43eb12af95c 725 PANTHER PTHR31998:SF0 1 683 0.0 T 26-04-2016 RGE_RS13730 6583b4d6c0449c06a22bd43eb12af95c 725 PIRSF PIRSF001265 1 691 3.0E-259 T 26-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 RGE_RS13730 6583b4d6c0449c06a22bd43eb12af95c 725 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 10 683 4.7E-263 T 26-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 RGE_RS13730 6583b4d6c0449c06a22bd43eb12af95c 725 PANTHER PTHR31998 1 683 0.0 T 26-04-2016 RGE_RS13730 6583b4d6c0449c06a22bd43eb12af95c 725 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 4 684 25.383 T 26-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 RGE_RS13730 6583b4d6c0449c06a22bd43eb12af95c 725 Pfam PF03030 Inorganic H+ pyrophosphatase 16 679 1.1E-263 T 26-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 26-04-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 SUPERFAMILY SSF55021 354 423 2.21E-11 T 26-04-2016 RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 Gene3D G3DSA:3.40.50.720 1 148 3.6E-49 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 PANTHER PTHR21499:SF2 4 369 1.3E-128 T 26-04-2016 RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 Gene3D G3DSA:3.30.360.10 149 299 5.8E-58 T 26-04-2016 RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 PIRSF PIRSF000098 1 434 4.4E-163 T 26-04-2016 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 SUPERFAMILY SSF51735 1 158 7.28E-35 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 Gene3D G3DSA:3.30.70.260 353 423 1.0E-9 T 26-04-2016 RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 1.9E-18 T 26-04-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 Pfam PF00742 Homoserine dehydrogenase 137 315 2.7E-65 T 26-04-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 Pfam PF01842 ACT domain 355 421 2.9E-12 T 26-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 SUPERFAMILY SSF55347 137 302 5.89E-52 T 26-04-2016 RGE_RS15865 30e4ec5c58f0da984e75f8d47083a2cc 436 PANTHER PTHR21499 4 369 1.3E-128 T 26-04-2016 RGE_RS18695 68b4ed04e1d3abf749cdea0c68120c71 114 Pfam PF03992 Antibiotic biosynthesis monooxygenase 2 76 2.4E-10 T 26-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain RGE_RS18695 68b4ed04e1d3abf749cdea0c68120c71 114 Gene3D G3DSA:3.30.70.900 2 101 4.5E-18 T 26-04-2016 RGE_RS18695 68b4ed04e1d3abf749cdea0c68120c71 114 PANTHER PTHR37811:SF2 2 109 5.7E-40 T 26-04-2016 RGE_RS18695 68b4ed04e1d3abf749cdea0c68120c71 114 PANTHER PTHR37811 2 109 5.7E-40 T 26-04-2016 RGE_RS18695 68b4ed04e1d3abf749cdea0c68120c71 114 SUPERFAMILY SSF54909 1 99 2.33E-24 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 581 39.782 T 26-04-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 PIRSF PIRSF001535 1 582 2.5E-260 T 26-04-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 573 2.8E-215 T 26-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 Pfam PF03129 Anticodon binding domain 486 577 1.3E-17 T 26-04-2016 IPR004154 Anticodon-binding RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 Gene3D G3DSA:3.40.50.800 482 581 8.1E-29 T 26-04-2016 IPR004154 Anticodon-binding RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 PANTHER PTHR11451 408 581 3.1E-146 T 26-04-2016 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 PANTHER PTHR11451 4 244 3.1E-146 T 26-04-2016 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 SUPERFAMILY SSF55681 10 237 9.57E-98 T 26-04-2016 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 SUPERFAMILY SSF55681 416 488 9.57E-98 T 26-04-2016 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 Gene3D G3DSA:3.90.960.10 243 397 3.0E-33 T 26-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 469 4.2E-42 T 26-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 Pfam PF04073 Aminoacyl-tRNA editing domain 257 387 1.9E-29 T 26-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 SUPERFAMILY SSF52954 474 581 1.01E-29 T 26-04-2016 IPR004154 Anticodon-binding RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 SUPERFAMILY SSF55826 218 399 1.96E-34 T 26-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.8E-15 T 26-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.8E-15 T 26-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.8E-15 T 26-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.8E-15 T 26-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 PANTHER PTHR11451:SF3 408 581 3.1E-146 T 26-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 PANTHER PTHR11451:SF3 4 244 3.1E-146 T 26-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 Gene3D G3DSA:3.30.930.10 10 234 9.0E-99 T 26-04-2016 RGE_RS20720 a93008944e2724376dcde42f77d4d2fc 582 Gene3D G3DSA:3.30.930.10 398 481 9.0E-99 T 26-04-2016 RGE_RS15685 7c23e149558553a95095a1ba7fd7bc50 477 PANTHER PTHR30203 10 477 1.4E-164 T 26-04-2016 RGE_RS15685 7c23e149558553a95095a1ba7fd7bc50 477 Gene3D G3DSA:1.20.1600.10 53 91 2.3E-107 T 26-04-2016 RGE_RS15685 7c23e149558553a95095a1ba7fd7bc50 477 Gene3D G3DSA:1.20.1600.10 135 307 2.3E-107 T 26-04-2016 RGE_RS15685 7c23e149558553a95095a1ba7fd7bc50 477 Gene3D G3DSA:1.20.1600.10 345 459 2.3E-107 T 26-04-2016 RGE_RS15685 7c23e149558553a95095a1ba7fd7bc50 477 Gene3D G3DSA:2.20.200.10 115 134 2.2E-18 T 26-04-2016 RGE_RS15685 7c23e149558553a95095a1ba7fd7bc50 477 Gene3D G3DSA:2.20.200.10 308 343 2.2E-18 T 26-04-2016 RGE_RS15685 7c23e149558553a95095a1ba7fd7bc50 477 SUPERFAMILY SSF56954 5 460 1.83E-113 T 26-04-2016 RGE_RS15685 7c23e149558553a95095a1ba7fd7bc50 477 Pfam PF02321 Outer membrane efflux protein 274 456 5.0E-29 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS15685 7c23e149558553a95095a1ba7fd7bc50 477 Pfam PF02321 Outer membrane efflux protein 66 247 7.4E-28 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS15685 7c23e149558553a95095a1ba7fd7bc50 477 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 12 458 7.8E-123 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS15685 7c23e149558553a95095a1ba7fd7bc50 477 PANTHER PTHR30203:SF15 10 477 1.4E-164 T 26-04-2016 RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 PANTHER PTHR13847 1 63 6.2E-78 T 26-04-2016 RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 PANTHER PTHR13847 107 417 6.2E-78 T 26-04-2016 RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 SUPERFAMILY SSF54373 267 360 1.23E-6 T 26-04-2016 RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 Gene3D G3DSA:3.40.50.720 1 96 3.2E-43 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 Gene3D G3DSA:3.40.50.720 351 415 3.2E-43 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 Gene3D G3DSA:3.40.50.720 192 264 3.2E-43 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 Gene3D G3DSA:3.30.9.10 135 191 1.6E-9 T 26-04-2016 RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 Gene3D G3DSA:3.30.9.10 265 350 1.6E-9 T 26-04-2016 RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 PANTHER PTHR13847:SF148 1 63 6.2E-78 T 26-04-2016 RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 PANTHER PTHR13847:SF148 107 417 6.2E-78 T 26-04-2016 RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 SUPERFAMILY SSF51905 1 54 9.58E-47 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 SUPERFAMILY SSF51905 107 266 9.58E-47 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 SUPERFAMILY SSF51905 360 416 9.58E-47 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13325 4ab39d4f5e5e0b67df6effb472ba75a1 417 Pfam PF01266 FAD dependent oxidoreductase 3 397 8.4E-55 T 26-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RGE_RS21570 d3550fa77c569a44adb5c7cdc2b19207 147 Pfam PF02130 Uncharacterized protein family UPF0054 27 137 3.6E-30 T 26-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RGE_RS21570 d3550fa77c569a44adb5c7cdc2b19207 147 PANTHER PTHR22881 5 145 2.9E-35 T 26-04-2016 RGE_RS21570 d3550fa77c569a44adb5c7cdc2b19207 147 SUPERFAMILY SSF55486 23 145 4.39E-40 T 26-04-2016 RGE_RS21570 d3550fa77c569a44adb5c7cdc2b19207 147 Gene3D G3DSA:3.40.390.30 23 145 2.9E-43 T 26-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 RGE_RS21570 d3550fa77c569a44adb5c7cdc2b19207 147 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 108 118 - T 26-04-2016 IPR020549 Endoribonuclease YbeY, conserved site RGE_RS21570 d3550fa77c569a44adb5c7cdc2b19207 147 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 39 139 2.2E-32 T 26-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RGE_RS21570 d3550fa77c569a44adb5c7cdc2b19207 147 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 6 142 20.941 T 26-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RGE_RS12515 b95ba639b4f5a31158e3276bd4dcbd45 161 Gene3D G3DSA:3.10.450.40 67 136 7.4E-7 T 26-04-2016 RGE_RS12515 b95ba639b4f5a31158e3276bd4dcbd45 161 PANTHER PTHR38595 1 157 1.8E-16 T 26-04-2016 RGE_RS12515 b95ba639b4f5a31158e3276bd4dcbd45 161 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 6 149 1.5E-36 T 26-04-2016 IPR017737 Type VI secretion system, lysozyme-related protein RGE_RS12515 b95ba639b4f5a31158e3276bd4dcbd45 161 SUPERFAMILY SSF160719 29 140 4.18E-10 T 26-04-2016 RGE_RS12515 b95ba639b4f5a31158e3276bd4dcbd45 161 Pfam PF04965 Gene 25-like lysozyme 29 129 5.0E-21 T 26-04-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD RGE_RS19065 b1f085d72437c74f6b108e1e4b4d3785 365 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.004 T 26-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS19065 b1f085d72437c74f6b108e1e4b4d3785 365 Gene3D G3DSA:3.90.870.10 2 210 5.3E-98 T 26-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RGE_RS19065 b1f085d72437c74f6b108e1e4b4d3785 365 PANTHER PTHR21327 1 361 1.6E-136 T 26-04-2016 RGE_RS19065 b1f085d72437c74f6b108e1e4b4d3785 365 Pfam PF00925 GTP cyclohydrolase II 208 361 4.3E-29 T 26-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RGE_RS19065 b1f085d72437c74f6b108e1e4b4d3785 365 PIRSF PIRSF001259 2 365 5.5E-110 T 26-04-2016 RGE_RS19065 b1f085d72437c74f6b108e1e4b4d3785 365 PANTHER PTHR21327:SF6 1 361 1.6E-136 T 26-04-2016 RGE_RS19065 b1f085d72437c74f6b108e1e4b4d3785 365 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 5 199 2.3E-72 T 26-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS19065 b1f085d72437c74f6b108e1e4b4d3785 365 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 8 198 7.0E-82 T 26-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS19065 b1f085d72437c74f6b108e1e4b4d3785 365 SUPERFAMILY SSF142695 205 361 4.45E-39 T 26-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RGE_RS19065 b1f085d72437c74f6b108e1e4b4d3785 365 SUPERFAMILY SSF55821 2 202 1.69E-85 T 26-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RGE_RS01440 581fd750b2187013f0f11a4868f2ec51 319 PANTHER PTHR30482:SF8 12 311 1.0E-112 T 26-04-2016 RGE_RS01440 581fd750b2187013f0f11a4868f2ec51 319 PANTHER PTHR30482 12 311 1.0E-112 T 26-04-2016 RGE_RS01440 581fd750b2187013f0f11a4868f2ec51 319 Pfam PF02653 Branched-chain amino acid transport system / permease component 30 290 2.1E-38 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS01765 bf5eaeb84e85915728767013f718ed19 584 Gene3D G3DSA:3.40.50.980 328 393 6.5E-26 T 26-04-2016 RGE_RS01765 bf5eaeb84e85915728767013f718ed19 584 Gene3D G3DSA:3.40.50.980 185 274 6.5E-26 T 26-04-2016 RGE_RS01765 bf5eaeb84e85915728767013f718ed19 584 Gene3D G3DSA:2.30.38.10 397 453 6.8E-13 T 26-04-2016 RGE_RS01765 bf5eaeb84e85915728767013f718ed19 584 SUPERFAMILY SSF56801 331 580 7.46E-99 T 26-04-2016 RGE_RS01765 bf5eaeb84e85915728767013f718ed19 584 SUPERFAMILY SSF56801 4 279 7.46E-99 T 26-04-2016 RGE_RS01765 bf5eaeb84e85915728767013f718ed19 584 Pfam PF00501 AMP-binding enzyme 10 459 6.4E-70 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS01765 bf5eaeb84e85915728767013f718ed19 584 Gene3D G3DSA:3.40.50.980 3 122 5.3E-26 T 26-04-2016 RGE_RS01765 bf5eaeb84e85915728767013f718ed19 584 Gene3D G3DSA:3.40.50.980 161 184 5.3E-26 T 26-04-2016 RGE_RS01765 bf5eaeb84e85915728767013f718ed19 584 PANTHER PTHR24096 2 573 1.1E-115 T 26-04-2016 RGE_RS01765 bf5eaeb84e85915728767013f718ed19 584 Gene3D G3DSA:3.30.300.30 460 559 7.1E-6 T 26-04-2016 RGE_RS01765 bf5eaeb84e85915728767013f718ed19 584 ProSitePatterns PS00455 Putative AMP-binding domain signature. 176 187 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS17025 91b92521bd677423dd6b1bed03f123a1 470 SUPERFAMILY SSF53383 109 456 1.24E-76 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS17025 91b92521bd677423dd6b1bed03f123a1 470 Pfam PF00155 Aminotransferase class I and II 127 452 1.8E-33 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS17025 91b92521bd677423dd6b1bed03f123a1 470 SUPERFAMILY SSF46785 5 89 5.67E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17025 91b92521bd677423dd6b1bed03f123a1 470 Gene3D G3DSA:1.10.10.10 2 76 2.1E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17025 91b92521bd677423dd6b1bed03f123a1 470 Gene3D G3DSA:3.40.640.10 136 356 2.2E-58 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS17025 91b92521bd677423dd6b1bed03f123a1 470 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 75 2.0E-13 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS17025 91b92521bd677423dd6b1bed03f123a1 470 SMART SM00345 16 75 9.2E-13 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS17025 91b92521bd677423dd6b1bed03f123a1 470 PANTHER PTHR11751:SF386 83 467 2.1E-88 T 26-04-2016 RGE_RS17025 91b92521bd677423dd6b1bed03f123a1 470 PANTHER PTHR11751 83 467 2.1E-88 T 26-04-2016 RGE_RS17025 91b92521bd677423dd6b1bed03f123a1 470 Gene3D G3DSA:3.90.1150.10 358 450 1.3E-5 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS18440 86b63c9e920c4c84a867579367539ae4 147 PANTHER PTHR30093 1 76 4.9E-15 T 26-04-2016 RGE_RS18440 86b63c9e920c4c84a867579367539ae4 147 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 33 6.5E-9 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS18440 86b63c9e920c4c84a867579367539ae4 147 Gene3D G3DSA:3.30.700.10 14 82 2.0E-13 T 26-04-2016 RGE_RS18440 86b63c9e920c4c84a867579367539ae4 147 Pfam PF13633 Prokaryotic N-terminal methylation site 12 37 5.0E-12 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS18440 86b63c9e920c4c84a867579367539ae4 147 PRINTS PR00813 Bacterial general secretion pathway protein G signature 13 38 6.2E-11 T 26-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RGE_RS18440 86b63c9e920c4c84a867579367539ae4 147 PRINTS PR00813 Bacterial general secretion pathway protein G signature 49 67 6.2E-11 T 26-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RGE_RS18440 86b63c9e920c4c84a867579367539ae4 147 SUPERFAMILY SSF54523 14 145 1.06E-21 T 26-04-2016 RGE_RS18440 86b63c9e920c4c84a867579367539ae4 147 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 12 32 - T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS21825 62104417e9b491c34d9c9dca85b285cb 181 Pfam PF04011 LemA family 8 176 4.2E-21 T 26-04-2016 IPR007156 LemA RGE_RS21825 62104417e9b491c34d9c9dca85b285cb 181 Gene3D G3DSA:1.20.1440.20 14 178 3.6E-26 T 26-04-2016 IPR023353 LemA-like domain RGE_RS21825 62104417e9b491c34d9c9dca85b285cb 181 SUPERFAMILY SSF140478 26 177 1.96E-14 T 26-04-2016 IPR023353 LemA-like domain RGE_RS19525 b6964dadd1fb11a1db6eaf4110afdd21 501 SMART SM00382 28 220 3.4E-7 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS19525 b6964dadd1fb11a1db6eaf4110afdd21 501 PANTHER PTHR24220:SF239 5 376 2.6E-155 T 26-04-2016 RGE_RS19525 b6964dadd1fb11a1db6eaf4110afdd21 501 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS19525 b6964dadd1fb11a1db6eaf4110afdd21 501 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS19525 b6964dadd1fb11a1db6eaf4110afdd21 501 SUPERFAMILY SSF52540 250 481 9.45E-33 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19525 b6964dadd1fb11a1db6eaf4110afdd21 501 SUPERFAMILY SSF52540 3 221 2.89E-63 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19525 b6964dadd1fb11a1db6eaf4110afdd21 501 PANTHER PTHR24220 5 376 2.6E-155 T 26-04-2016 RGE_RS19525 b6964dadd1fb11a1db6eaf4110afdd21 501 Pfam PF00005 ABC transporter 268 423 6.7E-9 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS19525 b6964dadd1fb11a1db6eaf4110afdd21 501 Pfam PF00005 ABC transporter 20 164 3.2E-36 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS19525 b6964dadd1fb11a1db6eaf4110afdd21 501 Gene3D G3DSA:3.40.50.300 4 221 2.1E-66 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19525 b6964dadd1fb11a1db6eaf4110afdd21 501 Gene3D G3DSA:3.40.50.300 249 483 1.2E-33 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09830 1faf4ff3f01bdabeef11163a1afc1dbb 229 Pfam PF03412 Peptidase C39 family 50 184 3.9E-22 T 26-04-2016 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 RGE_RS09830 1faf4ff3f01bdabeef11163a1afc1dbb 229 Gene3D G3DSA:3.90.70.10 59 184 2.3E-7 T 26-04-2016 RGE_RS09220 2bfa62b985841f1269d5de6911ecfec6 310 SUPERFAMILY SSF46785 2 81 2.11E-15 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09220 2bfa62b985841f1269d5de6911ecfec6 310 Gene3D G3DSA:1.10.10.10 1 82 4.8E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09220 2bfa62b985841f1269d5de6911ecfec6 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.1E-13 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS09220 2bfa62b985841f1269d5de6911ecfec6 310 Gene3D G3DSA:3.40.190.10 272 299 9.9E-23 T 26-04-2016 RGE_RS09220 2bfa62b985841f1269d5de6911ecfec6 310 Gene3D G3DSA:3.40.190.10 90 170 9.9E-23 T 26-04-2016 RGE_RS09220 2bfa62b985841f1269d5de6911ecfec6 310 Gene3D G3DSA:3.40.190.10 171 267 3.1E-25 T 26-04-2016 RGE_RS09220 2bfa62b985841f1269d5de6911ecfec6 310 SUPERFAMILY SSF53850 92 295 2.17E-33 T 26-04-2016 RGE_RS09220 2bfa62b985841f1269d5de6911ecfec6 310 PANTHER PTHR30118 1 306 8.1E-107 T 26-04-2016 RGE_RS09220 2bfa62b985841f1269d5de6911ecfec6 310 Pfam PF03466 LysR substrate binding domain 93 296 5.4E-20 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS09220 2bfa62b985841f1269d5de6911ecfec6 310 PANTHER PTHR30118:SF5 1 306 8.1E-107 T 26-04-2016 RGE_RS07620 94b08d54d06db09f0dd45da7164b36c2 383 PANTHER PTHR11751 8 378 1.1E-96 T 26-04-2016 RGE_RS07620 94b08d54d06db09f0dd45da7164b36c2 383 SUPERFAMILY SSF53383 6 381 3.16E-99 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS07620 94b08d54d06db09f0dd45da7164b36c2 383 Gene3D G3DSA:3.40.640.10 38 251 3.0E-62 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS07620 94b08d54d06db09f0dd45da7164b36c2 383 Pfam PF00155 Aminotransferase class I and II 37 377 3.0E-52 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS07620 94b08d54d06db09f0dd45da7164b36c2 383 Gene3D G3DSA:3.90.1150.10 252 382 1.9E-29 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS07620 94b08d54d06db09f0dd45da7164b36c2 383 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 229 242 - T 26-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RGE_RS13425 63efee8fbb82ef2342de8a496fefd532 141 Pfam PF00334 Nucleoside diphosphate kinase 4 135 1.8E-53 T 26-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS13425 63efee8fbb82ef2342de8a496fefd532 141 SUPERFAMILY SSF54919 1 138 1.57E-55 T 26-04-2016 RGE_RS13425 63efee8fbb82ef2342de8a496fefd532 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.047 T 26-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS13425 63efee8fbb82ef2342de8a496fefd532 141 SMART SM00562 3 140 7.5E-80 T 26-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS13425 63efee8fbb82ef2342de8a496fefd532 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 1.4E-37 T 26-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS13425 63efee8fbb82ef2342de8a496fefd532 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 1.4E-37 T 26-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS13425 63efee8fbb82ef2342de8a496fefd532 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 1.4E-37 T 26-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS13425 63efee8fbb82ef2342de8a496fefd532 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 1.4E-37 T 26-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS13425 63efee8fbb82ef2342de8a496fefd532 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 1.4E-37 T 26-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS13425 63efee8fbb82ef2342de8a496fefd532 141 PANTHER PTHR11349 1 134 4.6E-64 T 26-04-2016 RGE_RS13425 63efee8fbb82ef2342de8a496fefd532 141 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 26-04-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS13425 63efee8fbb82ef2342de8a496fefd532 141 Gene3D G3DSA:3.30.70.141 1 136 1.5E-56 T 26-04-2016 RGE_RS03780 3d1d9555d83929883c80b3f52f11db29 268 SUPERFAMILY SSF52540 4 245 9.71E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03780 3d1d9555d83929883c80b3f52f11db29 268 PANTHER PTHR24220 7 267 1.9E-114 T 26-04-2016 RGE_RS03780 3d1d9555d83929883c80b3f52f11db29 268 PANTHER PTHR24220:SF458 7 267 1.9E-114 T 26-04-2016 RGE_RS03780 3d1d9555d83929883c80b3f52f11db29 268 Gene3D G3DSA:3.40.50.300 3 241 5.8E-52 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03780 3d1d9555d83929883c80b3f52f11db29 268 SMART SM00382 31 225 2.5E-6 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS03780 3d1d9555d83929883c80b3f52f11db29 268 Pfam PF00005 ABC transporter 22 173 2.2E-23 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS22450 2f2588cb4272b203943f20d7d10adb29 215 Gene3D G3DSA:3.40.30.10 31 213 3.3E-53 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS22450 2f2588cb4272b203943f20d7d10adb29 215 PIRSF PIRSF001488 4 215 4.6E-48 T 26-04-2016 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL RGE_RS22450 2f2588cb4272b203943f20d7d10adb29 215 SUPERFAMILY SSF52833 29 191 4.62E-36 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS22450 2f2588cb4272b203943f20d7d10adb29 215 Pfam PF01323 DSBA-like thioredoxin domain 97 192 6.7E-12 T 26-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RGE_RS22450 2f2588cb4272b203943f20d7d10adb29 215 PANTHER PTHR35891:SF2 1 208 6.9E-45 T 26-04-2016 RGE_RS22450 2f2588cb4272b203943f20d7d10adb29 215 PANTHER PTHR35891 1 208 6.9E-45 T 26-04-2016 RGE_RS23090 d99a992bd9e64ec241fcd897bafa6b95 230 ProSitePatterns PS01081 TetR-type HTH domain signature. 34 65 - T 26-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RGE_RS23090 d99a992bd9e64ec241fcd897bafa6b95 230 Gene3D G3DSA:1.10.357.10 4 174 4.1E-24 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS23090 d99a992bd9e64ec241fcd897bafa6b95 230 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 5.1E-13 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS23090 d99a992bd9e64ec241fcd897bafa6b95 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 1.1E-8 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS23090 d99a992bd9e64ec241fcd897bafa6b95 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.1E-8 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS23090 d99a992bd9e64ec241fcd897bafa6b95 230 PANTHER PTHR30055 5 191 1.7E-14 T 26-04-2016 RGE_RS23090 d99a992bd9e64ec241fcd897bafa6b95 230 SUPERFAMILY SSF46689 12 72 4.67E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS03030 3ef938089f5fa99774db58194356c2fb 403 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 243 332 6.1E-19 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS03030 3ef938089f5fa99774db58194356c2fb 403 PANTHER PTHR40396 144 394 4.7E-17 T 26-04-2016 RGE_RS03030 3ef938089f5fa99774db58194356c2fb 403 Pfam PF13175 AAA ATPase domain 9 55 6.6E-10 T 26-04-2016 RGE_RS03030 3ef938089f5fa99774db58194356c2fb 403 Gene3D G3DSA:3.40.50.300 9 357 3.6E-32 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03030 3ef938089f5fa99774db58194356c2fb 403 SUPERFAMILY SSF52540 127 344 6.81E-23 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03030 3ef938089f5fa99774db58194356c2fb 403 SUPERFAMILY SSF52540 9 100 6.81E-23 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18165 4ea5711114c4e6485d413ea1e8d418a7 242 Pfam PF13643 Domain of unknown function (DUF4145) 47 131 7.3E-17 T 26-04-2016 IPR025285 Domain of unknown function DUF4145 RGE_RS19165 2ceb4bac8b70eace4bbeab0ace814787 265 Gene3D G3DSA:3.30.390.50 170 263 2.0E-13 T 26-04-2016 RGE_RS19165 2ceb4bac8b70eace4bbeab0ace814787 265 SUPERFAMILY SSF55447 168 263 4.84E-17 T 26-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RGE_RS19165 2ceb4bac8b70eace4bbeab0ace814787 265 Gene3D G3DSA:3.30.465.10 54 166 1.6E-31 T 26-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RGE_RS19165 2ceb4bac8b70eace4bbeab0ace814787 265 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 166 9.2E-44 T 26-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RGE_RS19165 2ceb4bac8b70eace4bbeab0ace814787 265 SMART SM01092 170 263 2.2E-17 T 26-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RGE_RS19165 2ceb4bac8b70eace4bbeab0ace814787 265 PANTHER PTHR11908:SF68 4 264 5.3E-65 T 26-04-2016 RGE_RS19165 2ceb4bac8b70eace4bbeab0ace814787 265 PANTHER PTHR11908 4 264 5.3E-65 T 26-04-2016 RGE_RS19165 2ceb4bac8b70eace4bbeab0ace814787 265 SUPERFAMILY SSF56176 1 166 8.45E-50 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS19165 2ceb4bac8b70eace4bbeab0ace814787 265 Gene3D G3DSA:3.30.43.10 1 50 4.9E-18 T 26-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RGE_RS05115 aa879c4c35f9e1c5b8ed0d6106bd44ff 329 SUPERFAMILY SSF53659 4 323 2.16E-99 T 26-04-2016 RGE_RS05115 aa879c4c35f9e1c5b8ed0d6106bd44ff 329 PANTHER PTHR30004 1 328 7.1E-122 T 26-04-2016 RGE_RS05115 aa879c4c35f9e1c5b8ed0d6106bd44ff 329 Gene3D G3DSA:3.40.718.10 3 326 3.9E-121 T 26-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RGE_RS05115 aa879c4c35f9e1c5b8ed0d6106bd44ff 329 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 1 325 33.892 T 26-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 RGE_RS05115 aa879c4c35f9e1c5b8ed0d6106bd44ff 329 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 5 323 2.6E-115 T 26-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 RGE_RS05115 aa879c4c35f9e1c5b8ed0d6106bd44ff 329 PANTHER PTHR30004:SF6 1 328 7.1E-122 T 26-04-2016 RGE_RS05115 aa879c4c35f9e1c5b8ed0d6106bd44ff 329 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 32 321 2.4E-101 T 26-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 RGE_RS13420 c7b52fb82d0cae8331a0f9c99673568c 372 Gene3D G3DSA:3.80.30.10 155 327 1.6E-5 T 26-04-2016 RGE_RS13420 c7b52fb82d0cae8331a0f9c99673568c 372 PANTHER PTHR30544 4 365 2.3E-161 T 26-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS13420 c7b52fb82d0cae8331a0f9c99673568c 372 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 2 348 72.864 T 26-04-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS13420 c7b52fb82d0cae8331a0f9c99673568c 372 PIRSF PIRSF006004 1 360 7.6E-142 T 26-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS13420 c7b52fb82d0cae8331a0f9c99673568c 372 PANTHER PTHR30544:SF5 4 365 2.3E-161 T 26-04-2016 RGE_RS13420 c7b52fb82d0cae8331a0f9c99673568c 372 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 2 351 1.1E-126 T 26-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS13420 c7b52fb82d0cae8331a0f9c99673568c 372 SUPERFAMILY SSF102114 102 310 4.84E-14 T 26-04-2016 RGE_RS13420 c7b52fb82d0cae8331a0f9c99673568c 372 Pfam PF04055 Radical SAM superfamily 106 277 1.5E-17 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS15635 788545bfbd72a0f1e1b47a7d8093949d 174 PANTHER PTHR11079 1 146 2.6E-47 T 26-04-2016 RGE_RS15635 788545bfbd72a0f1e1b47a7d8093949d 174 Pfam PF14437 MafB19-like deaminase 4 146 2.4E-26 T 26-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 RGE_RS15635 788545bfbd72a0f1e1b47a7d8093949d 174 Gene3D G3DSA:3.40.140.10 1 144 3.2E-59 T 26-04-2016 RGE_RS15635 788545bfbd72a0f1e1b47a7d8093949d 174 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 50 87 - T 26-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RGE_RS15635 788545bfbd72a0f1e1b47a7d8093949d 174 SUPERFAMILY SSF53927 1 147 9.04E-54 T 26-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RGE_RS15635 788545bfbd72a0f1e1b47a7d8093949d 174 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 1 146 47.087 T 26-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 RGE_RS01140 fee59ee9b34c60675082e6dd28084e60 292 PANTHER PTHR10907 14 289 1.1E-70 T 26-04-2016 RGE_RS01140 fee59ee9b34c60675082e6dd28084e60 292 PANTHER PTHR10907:SF47 14 289 1.1E-70 T 26-04-2016 RGE_RS01140 fee59ee9b34c60675082e6dd28084e60 292 SUPERFAMILY SSF63829 8 288 6.54E-69 T 26-04-2016 RGE_RS01140 fee59ee9b34c60675082e6dd28084e60 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 130 152 2.3E-33 T 26-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RGE_RS01140 fee59ee9b34c60675082e6dd28084e60 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 90 111 2.3E-33 T 26-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RGE_RS01140 fee59ee9b34c60675082e6dd28084e60 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 14 31 2.3E-33 T 26-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RGE_RS01140 fee59ee9b34c60675082e6dd28084e60 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 244 262 2.3E-33 T 26-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RGE_RS01140 fee59ee9b34c60675082e6dd28084e60 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 202 219 2.3E-33 T 26-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RGE_RS01140 fee59ee9b34c60675082e6dd28084e60 292 Gene3D G3DSA:2.120.10.30 9 290 8.3E-90 T 26-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RGE_RS01140 fee59ee9b34c60675082e6dd28084e60 292 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 14 262 2.0E-80 T 26-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region RGE_RS21765 70cdf162ac2812a0be52793fda511550 708 Pfam PF00593 TonB dependent receptor 456 706 2.9E-26 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS21765 70cdf162ac2812a0be52793fda511550 708 SUPERFAMILY SSF56935 25 708 3.11E-109 T 26-04-2016 RGE_RS21765 70cdf162ac2812a0be52793fda511550 708 Gene3D G3DSA:2.40.170.20 156 708 9.3E-76 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS21765 70cdf162ac2812a0be52793fda511550 708 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 157 5.0E-24 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS21765 70cdf162ac2812a0be52793fda511550 708 PANTHER PTHR32552 14 708 5.9E-55 T 26-04-2016 RGE_RS21765 70cdf162ac2812a0be52793fda511550 708 Gene3D G3DSA:2.170.130.10 25 155 7.0E-32 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 SMART SM00387 820 931 9.7E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 821 928 7.0E-28 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 SUPERFAMILY SSF52172 952 1071 1.22E-27 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 SUPERFAMILY SSF55874 764 927 9.17E-44 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 Gene3D G3DSA:3.40.50.2300 950 1066 6.2E-27 T 26-04-2016 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 Gene3D G3DSA:3.30.565.10 774 931 7.5E-45 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 Gene3D G3DSA:1.10.287.130 701 769 1.9E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 PANTHER PTHR24423 16 25 1.1E-112 T 26-04-2016 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 PANTHER PTHR24423 265 302 1.1E-112 T 26-04-2016 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 PANTHER PTHR24423 686 1107 1.1E-112 T 26-04-2016 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 Pfam PF00512 His Kinase A (phospho-acceptor) domain 707 773 1.3E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 SMART SM00448 954 1066 3.3E-18 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 SUPERFAMILY SSF47384 695 774 2.94E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 SMART SM00388 707 773 7.4E-22 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 Pfam PF00072 Response regulator receiver domain 956 1064 1.2E-17 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 PRINTS PR00344 Bacterial sensor protein C-terminal signature 856 870 1.7E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 PRINTS PR00344 Bacterial sensor protein C-terminal signature 891 909 1.7E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 PRINTS PR00344 Bacterial sensor protein C-terminal signature 915 928 1.7E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19560 5f2c16b5a5d093eaa79841d9b445e1ad 1162 PRINTS PR00344 Bacterial sensor protein C-terminal signature 874 884 1.7E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04565 8a00424dea41f67d58cc7f52dbbc2efd 612 Pfam PF00664 ABC transporter transmembrane region 44 317 1.9E-42 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS04565 8a00424dea41f67d58cc7f52dbbc2efd 612 SUPERFAMILY SSF52540 356 600 1.97E-90 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04565 8a00424dea41f67d58cc7f52dbbc2efd 612 ProSitePatterns PS00211 ABC transporters family signature. 502 516 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS04565 8a00424dea41f67d58cc7f52dbbc2efd 612 Gene3D G3DSA:1.20.1560.10 30 346 3.2E-70 T 26-04-2016 RGE_RS04565 8a00424dea41f67d58cc7f52dbbc2efd 612 PANTHER PTHR24221:SF18 1 609 0.0 T 26-04-2016 RGE_RS04565 8a00424dea41f67d58cc7f52dbbc2efd 612 PANTHER PTHR24221 1 609 0.0 T 26-04-2016 RGE_RS04565 8a00424dea41f67d58cc7f52dbbc2efd 612 Pfam PF00005 ABC transporter 381 530 4.7E-34 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS04565 8a00424dea41f67d58cc7f52dbbc2efd 612 Gene3D G3DSA:3.40.50.300 364 596 2.3E-83 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04565 8a00424dea41f67d58cc7f52dbbc2efd 612 SUPERFAMILY SSF90123 30 351 2.75E-67 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS04565 8a00424dea41f67d58cc7f52dbbc2efd 612 SMART SM00382 390 582 1.6E-15 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS03285 262ccd6aa9b99d664c77779aab84b984 406 TIGRFAM TIGR04051 rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ 30 383 8.4E-191 T 26-04-2016 IPR023992 Heme D1 biosynthesis, radical SAM protein NirJ RGE_RS03285 262ccd6aa9b99d664c77779aab84b984 406 Pfam PF04055 Radical SAM superfamily 37 182 4.0E-22 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS03285 262ccd6aa9b99d664c77779aab84b984 406 Pfam PF13353 4Fe-4S single cluster domain 33 123 5.2E-11 T 26-04-2016 RGE_RS03285 262ccd6aa9b99d664c77779aab84b984 406 PIRSF PIRSF037420 21 395 1.9E-128 T 26-04-2016 IPR017200 Coenzyme PQQ synthesis protein E UniPathway: UPA00539 RGE_RS03285 262ccd6aa9b99d664c77779aab84b984 406 SUPERFAMILY SSF102114 31 355 2.49E-66 T 26-04-2016 RGE_RS03285 262ccd6aa9b99d664c77779aab84b984 406 PANTHER PTHR11228 276 385 1.6E-73 T 26-04-2016 RGE_RS03285 262ccd6aa9b99d664c77779aab84b984 406 PANTHER PTHR11228 32 260 1.6E-73 T 26-04-2016 RGE_RS03285 262ccd6aa9b99d664c77779aab84b984 406 PANTHER PTHR11228:SF7 276 385 1.6E-73 T 26-04-2016 RGE_RS03285 262ccd6aa9b99d664c77779aab84b984 406 PANTHER PTHR11228:SF7 32 260 1.6E-73 T 26-04-2016 RGE_RS03285 262ccd6aa9b99d664c77779aab84b984 406 Gene3D G3DSA:3.20.20.70 30 366 2.3E-71 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS03285 262ccd6aa9b99d664c77779aab84b984 406 SMART SM00729 31 229 0.0026 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 PANTHER PTHR22942 5 306 1.0E-59 T 26-04-2016 RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 PRINTS PR01874 DNA repair protein radA signature 19 47 1.2E-8 T 26-04-2016 RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 PRINTS PR01874 DNA repair protein radA signature 61 78 1.2E-8 T 26-04-2016 RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 Pfam PF06745 KaiC 11 235 7.4E-38 T 26-04-2016 IPR014774 KaiC-like domain RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 Pfam PF06745 KaiC 250 462 2.8E-21 T 26-04-2016 IPR014774 KaiC-like domain RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 SMART SM00382 267 431 0.0013 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 SMART SM00382 27 180 0.47 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 Gene3D G3DSA:3.40.50.300 6 241 6.0E-70 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 Gene3D G3DSA:3.40.50.300 242 483 1.3E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 PIRSF PIRSF039117 2 485 9.7E-114 T 26-04-2016 IPR030665 Circadian clock protein kinase KaiC KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 PANTHER PTHR22942:SF38 5 306 1.0E-59 T 26-04-2016 RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 SUPERFAMILY SSF52540 6 239 1.56E-33 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11340 f88f92c35025d23136f78df8f228fe6e 486 SUPERFAMILY SSF52540 249 481 1.55E-35 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22670 7117fd0b1ca04d0543dec30c52dadfb8 146 SUPERFAMILY SSF54523 8 141 3.87E-22 T 26-04-2016 RGE_RS22670 7117fd0b1ca04d0543dec30c52dadfb8 146 Gene3D G3DSA:3.30.700.10 8 142 7.2E-37 T 26-04-2016 RGE_RS22670 7117fd0b1ca04d0543dec30c52dadfb8 146 PANTHER PTHR30093 1 70 3.6E-19 T 26-04-2016 RGE_RS22670 7117fd0b1ca04d0543dec30c52dadfb8 146 Pfam PF00114 Pilin (bacterial filament) 36 141 3.2E-14 T 26-04-2016 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 RGE_RS22670 7117fd0b1ca04d0543dec30c52dadfb8 146 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS22670 7117fd0b1ca04d0543dec30c52dadfb8 146 Pfam PF13633 Prokaryotic N-terminal methylation site 5 31 2.0E-12 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS22670 7117fd0b1ca04d0543dec30c52dadfb8 146 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 2.8E-10 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS22010 ea446ba0152a20b4da5bfa59a606fb4a 244 PANTHER PTHR26402 14 132 1.6E-20 T 26-04-2016 RGE_RS22010 ea446ba0152a20b4da5bfa59a606fb4a 244 SUPERFAMILY SSF47226 112 235 6.67E-14 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS22010 ea446ba0152a20b4da5bfa59a606fb4a 244 Pfam PF00072 Response regulator receiver domain 16 126 4.8E-15 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS22010 ea446ba0152a20b4da5bfa59a606fb4a 244 Gene3D G3DSA:3.40.50.2300 11 134 6.1E-25 T 26-04-2016 RGE_RS22010 ea446ba0152a20b4da5bfa59a606fb4a 244 SMART SM00448 14 128 2.2E-19 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS22010 ea446ba0152a20b4da5bfa59a606fb4a 244 Pfam PF01627 Hpt domain 166 239 2.3E-5 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS22010 ea446ba0152a20b4da5bfa59a606fb4a 244 SUPERFAMILY SSF52172 12 134 1.71E-27 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS22010 ea446ba0152a20b4da5bfa59a606fb4a 244 Gene3D G3DSA:1.20.120.160 147 240 1.2E-10 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 Gene3D G3DSA:3.30.70.100 90 153 1.4E-7 T 26-04-2016 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 Gene3D G3DSA:3.40.50.1000 453 495 7.8E-44 T 26-04-2016 IPR023214 HAD-like domain RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 Gene3D G3DSA:3.40.50.1000 603 744 7.8E-44 T 26-04-2016 IPR023214 HAD-like domain RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 PANTHER PTHR24093:SF317 91 781 8.0E-201 T 26-04-2016 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 SUPERFAMILY SSF56784 478 497 1.47E-55 T 26-04-2016 IPR023214 HAD-like domain RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 SUPERFAMILY SSF56784 533 775 1.47E-55 T 26-04-2016 IPR023214 HAD-like domain RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 SUPERFAMILY SSF55008 90 153 1.54E-7 T 26-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 SUPERFAMILY SSF81665 229 282 1.26E-15 T 26-04-2016 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 SUPERFAMILY SSF81665 379 470 1.26E-15 T 26-04-2016 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 Pfam PF00702 haloacid dehalogenase-like hydrolase 475 689 4.6E-40 T 26-04-2016 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 SUPERFAMILY SSF81653 281 378 4.45E-24 T 26-04-2016 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 228 778 3.7E-166 T 26-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 Pfam PF00122 E1-E2 ATPase 249 470 6.6E-65 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 Pfam PF00403 Heavy-metal-associated domain 91 148 6.7E-6 T 26-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 481 487 - T 26-04-2016 IPR018303 P-type ATPase, phosphorylation site RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 PANTHER PTHR24093 91 781 8.0E-201 T 26-04-2016 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 251 751 1.1E-73 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 Gene3D G3DSA:2.70.150.10 228 379 3.8E-26 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 Gene3D G3DSA:3.40.1110.10 504 602 8.4E-9 T 26-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 622 632 8.3E-25 T 26-04-2016 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 675 694 8.3E-25 T 26-04-2016 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 699 711 8.3E-25 T 26-04-2016 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 328 342 8.3E-25 T 26-04-2016 RGE_RS03060 3e3533d5adcfde4b3abc020746ce2b21 784 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 479 493 8.3E-25 T 26-04-2016 RGE_RS14630 56f0b5967aae8087f05ef4dd68c9044f 341 PANTHER PTHR11019:SF52 228 341 6.8E-17 T 26-04-2016 RGE_RS14630 56f0b5967aae8087f05ef4dd68c9044f 341 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 41 207 1.1E-24 T 26-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RGE_RS14630 56f0b5967aae8087f05ef4dd68c9044f 341 Gene3D G3DSA:1.10.10.60 286 334 4.6E-7 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS14630 56f0b5967aae8087f05ef4dd68c9044f 341 PANTHER PTHR11019 228 341 6.8E-17 T 26-04-2016 RGE_RS14630 56f0b5967aae8087f05ef4dd68c9044f 341 Pfam PF12833 Helix-turn-helix domain 258 334 4.4E-10 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS14630 56f0b5967aae8087f05ef4dd68c9044f 341 SMART SM00342 251 333 1.5E-12 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS14630 56f0b5967aae8087f05ef4dd68c9044f 341 SUPERFAMILY SSF46689 286 336 1.22E-7 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS19290 7061b942b0d1e5a7e47aa59381930fe1 230 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 230 6.4E-104 T 26-04-2016 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE RGE_RS19290 7061b942b0d1e5a7e47aa59381930fe1 230 Gene3D G3DSA:3.40.50.300 1 221 5.3E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19290 7061b942b0d1e5a7e47aa59381930fe1 230 SUPERFAMILY SSF52540 2 221 2.21E-56 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19290 7061b942b0d1e5a7e47aa59381930fe1 230 Pfam PF00005 ABC transporter 17 159 3.7E-31 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS19290 7061b942b0d1e5a7e47aa59381930fe1 230 PANTHER PTHR24220 3 230 1.0E-121 T 26-04-2016 RGE_RS19290 7061b942b0d1e5a7e47aa59381930fe1 230 SMART SM00382 26 209 7.6E-9 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS19290 7061b942b0d1e5a7e47aa59381930fe1 230 PANTHER PTHR24220:SF404 3 230 1.0E-121 T 26-04-2016 RGE_RS05410 74b09f0645ac562790b60efe9df059a0 322 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS05410 74b09f0645ac562790b60efe9df059a0 322 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 316 2.5E-25 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS05410 74b09f0645ac562790b60efe9df059a0 322 SUPERFAMILY SSF52540 8 253 9.73E-71 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05410 74b09f0645ac562790b60efe9df059a0 322 PANTHER PTHR24220:SF493 6 320 1.9E-160 T 26-04-2016 RGE_RS05410 74b09f0645ac562790b60efe9df059a0 322 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 298 1.6E-17 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS05410 74b09f0645ac562790b60efe9df059a0 322 SMART SM00382 39 231 1.6E-16 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS05410 74b09f0645ac562790b60efe9df059a0 322 Pfam PF00005 ABC transporter 31 181 2.5E-31 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS05410 74b09f0645ac562790b60efe9df059a0 322 PANTHER PTHR24220 6 320 1.9E-160 T 26-04-2016 RGE_RS05410 74b09f0645ac562790b60efe9df059a0 322 Gene3D G3DSA:3.40.50.300 4 255 4.5E-79 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03250 ee67e2fdf86ccb6bb4f40a1a6a6d7d5e 582 Gene3D G3DSA:2.130.10.10 195 293 1.1E-4 T 26-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RGE_RS03250 ee67e2fdf86ccb6bb4f40a1a6a6d7d5e 582 Gene3D G3DSA:1.10.760.10 62 153 3.5E-22 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03250 ee67e2fdf86ccb6bb4f40a1a6a6d7d5e 582 SUPERFAMILY SSF51004 156 582 5.49E-122 T 26-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain RGE_RS03250 ee67e2fdf86ccb6bb4f40a1a6a6d7d5e 582 Pfam PF02239 Cytochrome D1 heme domain 184 577 1.9E-152 T 26-04-2016 RGE_RS03250 ee67e2fdf86ccb6bb4f40a1a6a6d7d5e 582 Gene3D G3DSA:2.140.10.20 294 573 2.0E-144 T 26-04-2016 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain RGE_RS03250 ee67e2fdf86ccb6bb4f40a1a6a6d7d5e 582 SUPERFAMILY SSF46626 53 172 3.02E-19 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03250 ee67e2fdf86ccb6bb4f40a1a6a6d7d5e 582 SUPERFAMILY SSF46626 15 24 3.02E-19 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03250 ee67e2fdf86ccb6bb4f40a1a6a6d7d5e 582 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 74 147 2.8E-9 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS04995 ce0a490ef11f412348852593751ec810 523 Pfam PF01808 AICARFT/IMPCHase bienzyme 133 454 7.0E-117 T 26-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RGE_RS04995 ce0a490ef11f412348852593751ec810 523 Gene3D G3DSA:3.40.140.20 371 513 9.0E-55 T 26-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RGE_RS04995 ce0a490ef11f412348852593751ec810 523 Gene3D G3DSA:3.40.50.1380 2 184 2.6E-83 T 26-04-2016 IPR011607 Methylglyoxal synthase-like domain RGE_RS04995 ce0a490ef11f412348852593751ec810 523 SUPERFAMILY SSF53927 217 523 8.92E-125 T 26-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RGE_RS04995 ce0a490ef11f412348852593751ec810 523 SUPERFAMILY SSF52335 2 190 2.88E-69 T 26-04-2016 IPR011607 Methylglyoxal synthase-like domain RGE_RS04995 ce0a490ef11f412348852593751ec810 523 PANTHER PTHR11692:SF2 1 191 3.2E-300 T 26-04-2016 RGE_RS04995 ce0a490ef11f412348852593751ec810 523 PANTHER PTHR11692:SF2 207 523 3.2E-300 T 26-04-2016 RGE_RS04995 ce0a490ef11f412348852593751ec810 523 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3 523 2.0E-216 T 26-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RGE_RS04995 ce0a490ef11f412348852593751ec810 523 SMART SM00851 13 128 3.3E-61 T 26-04-2016 IPR011607 Methylglyoxal synthase-like domain RGE_RS04995 ce0a490ef11f412348852593751ec810 523 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 1 523 43.854 T 26-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RGE_RS04995 ce0a490ef11f412348852593751ec810 523 Pfam PF02142 MGS-like domain 13 127 1.3E-28 T 26-04-2016 IPR011607 Methylglyoxal synthase-like domain RGE_RS04995 ce0a490ef11f412348852593751ec810 523 PANTHER PTHR11692 1 191 3.2E-300 T 26-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RGE_RS04995 ce0a490ef11f412348852593751ec810 523 PANTHER PTHR11692 207 523 3.2E-300 T 26-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RGE_RS04995 ce0a490ef11f412348852593751ec810 523 SMART SM00798 133 455 8.9E-200 T 26-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RGE_RS04995 ce0a490ef11f412348852593751ec810 523 PIRSF PIRSF000414 1 523 1.6E-209 T 26-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RGE_RS04995 ce0a490ef11f412348852593751ec810 523 Gene3D G3DSA:3.40.140.20 249 365 1.4E-47 T 26-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 Gene3D G3DSA:1.10.580.10 56 285 4.1E-97 T 26-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 SUPERFAMILY SSF48256 9 436 2.88E-161 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 PRINTS PR00143 Citrate synthase signature 245 273 1.6E-54 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 PRINTS PR00143 Citrate synthase signature 387 401 1.6E-54 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 PRINTS PR00143 Citrate synthase signature 169 182 1.6E-54 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 PRINTS PR00143 Citrate synthase signature 223 238 1.6E-54 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 PRINTS PR00143 Citrate synthase signature 367 383 1.6E-54 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 PRINTS PR00143 Citrate synthase signature 303 323 1.6E-54 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 Pfam PF00285 Citrate synthase, C-terminal domain 52 419 1.2E-129 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 PIRSF PIRSF001369 41 436 5.2E-160 T 26-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 18 430 2.4E-234 T 26-04-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 PANTHER PTHR11739 31 436 1.4E-198 T 26-04-2016 IPR002020 Citrate synthase GO:0046912 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 ProSitePatterns PS00480 Citrate synthase signature. 310 322 - T 26-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 RGE_RS06020 64eb01eef7ae6656554955832607e36a 436 Gene3D G3DSA:1.10.230.10 286 380 5.1E-38 T 26-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 127 155 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 Pfam PF00106 short chain dehydrogenase 8 183 1.8E-35 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 PANTHER PTHR24322 140 171 2.6E-27 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 PANTHER PTHR24322 10 124 2.6E-27 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.6E-15 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 178 1.6E-15 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 114 130 1.6E-15 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 1.6E-15 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 67 78 1.6E-15 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 172 0.0066 T 26-04-2016 RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 Gene3D G3DSA:3.40.50.720 7 224 3.0E-48 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 67 78 9.9E-5 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 159 9.9E-5 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 120 128 9.9E-5 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14700 d99b3f4cc07f71a333c974edddca35b5 255 SUPERFAMILY SSF51735 2 226 7.68E-52 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 PANTHER PTHR35008 40 448 3.8E-182 T 26-04-2016 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 Gene3D G3DSA:1.10.760.10 577 688 2.2E-14 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 Gene3D G3DSA:1.10.760.10 326 436 2.6E-24 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 SUPERFAMILY SSF46626 474 551 2.62E-23 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 Gene3D G3DSA:3.90.10.10 462 480 3.0E-4 T 26-04-2016 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 SUPERFAMILY SSF46626 326 428 1.48E-20 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 SUPERFAMILY SSF46626 197 310 4.54E-12 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 SUPERFAMILY SSF46626 570 674 2.26E-18 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 Gene3D G3DSA:1.10.760.10 481 550 2.4E-24 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 Pfam PF00034 Cytochrome c 577 665 1.3E-7 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 Pfam PF00034 Cytochrome c 51 149 3.8E-5 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 SUPERFAMILY SSF46626 44 171 6.44E-23 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 PANTHER PTHR35008:SF3 40 448 3.8E-182 T 26-04-2016 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 325 407 3.2E-5 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 Gene3D G3DSA:1.10.760.10 47 148 1.4E-16 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14060 80adb5f029aec8c8004beffac77d8e6b 689 Gene3D G3DSA:1.10.760.10 193 301 2.7E-5 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS21745 31e49811be1acb1c0f4f24d26901f6d9 348 SUPERFAMILY SSF90002 263 345 3.79E-19 T 26-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RGE_RS21745 31e49811be1acb1c0f4f24d26901f6d9 348 SMART SM00833 254 345 3.5E-6 T 26-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RGE_RS21745 31e49811be1acb1c0f4f24d26901f6d9 348 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 206 4.9E-58 T 26-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RGE_RS21745 31e49811be1acb1c0f4f24d26901f6d9 348 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 263 345 6.1E-18 T 26-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RGE_RS21745 31e49811be1acb1c0f4f24d26901f6d9 348 Gene3D G3DSA:3.40.50.300 2 230 1.8E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21745 31e49811be1acb1c0f4f24d26901f6d9 348 SUPERFAMILY SSF52540 3 207 4.88E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21745 31e49811be1acb1c0f4f24d26901f6d9 348 PANTHER PTHR13748 1 347 1.1E-138 T 26-04-2016 RGE_RS21745 31e49811be1acb1c0f4f24d26901f6d9 348 Gene3D G3DSA:3.30.1220.10 236 345 1.5E-28 T 26-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RGE_RS21745 31e49811be1acb1c0f4f24d26901f6d9 348 TIGRFAM TIGR02475 CobW: cobalamin biosynthesis protein CobW 2 340 2.0E-153 T 26-04-2016 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 UniPathway: UPA00148 RGE_RS21745 31e49811be1acb1c0f4f24d26901f6d9 348 PANTHER PTHR13748:SF10 1 347 1.1E-138 T 26-04-2016 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 UniPathway: UPA00148 RGE_RS18235 c1c657a4afda74640c36b90d303e6061 271 PANTHER PTHR13696:SF1 1 258 1.9E-87 T 26-04-2016 RGE_RS18235 c1c657a4afda74640c36b90d303e6061 271 Gene3D G3DSA:3.40.50.300 1 248 2.0E-58 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18235 c1c657a4afda74640c36b90d303e6061 271 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 3 268 2.0E-103 T 26-04-2016 IPR010223 ATP binding protein MinD, bacterial-type GO:0000918|GO:0016887 RGE_RS18235 c1c657a4afda74640c36b90d303e6061 271 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 217 1.9E-30 T 26-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RGE_RS18235 c1c657a4afda74640c36b90d303e6061 271 PANTHER PTHR13696 1 258 1.9E-87 T 26-04-2016 RGE_RS18235 c1c657a4afda74640c36b90d303e6061 271 SUPERFAMILY SSF52540 1 269 4.62E-55 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18235 c1c657a4afda74640c36b90d303e6061 271 PIRSF PIRSF003092 1 271 1.2E-88 T 26-04-2016 IPR025501 ATP binding protein MinD RGE_RS16380 2113eb5d89b31aa1be8a8fa9d847e275 366 PIRSF PIRSF000017 1 354 4.1E-161 T 26-04-2016 IPR003158 Photosynthetic reaction centre, cytochrome c subunit GO:0005506|GO:0009055|GO:0019684|GO:0020037|GO:0030077 RGE_RS16380 2113eb5d89b31aa1be8a8fa9d847e275 366 Gene3D G3DSA:1.10.468.10 14 143 2.0E-33 T 26-04-2016 IPR023119 Multihaem cytochrome, photosynthetic reaction centre cytochrome subunit-like RGE_RS16380 2113eb5d89b31aa1be8a8fa9d847e275 366 Gene3D G3DSA:1.10.468.10 144 316 1.6E-60 T 26-04-2016 IPR023119 Multihaem cytochrome, photosynthetic reaction centre cytochrome subunit-like RGE_RS16380 2113eb5d89b31aa1be8a8fa9d847e275 366 SUPERFAMILY SSF48695 22 333 3.21E-110 T 26-04-2016 IPR011031 Multihaem cytochrome RGE_RS16380 2113eb5d89b31aa1be8a8fa9d847e275 366 Pfam PF02276 Photosynthetic reaction centre cytochrome C subunit 24 332 4.6E-145 T 26-04-2016 IPR003158 Photosynthetic reaction centre, cytochrome c subunit GO:0005506|GO:0009055|GO:0019684|GO:0020037|GO:0030077 RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 SUPERFAMILY SSF55073 508 663 1.96E-41 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 PANTHER PTHR10799 541 661 3.8E-25 T 26-04-2016 RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 PANTHER PTHR10799:SF750 541 661 3.8E-25 T 26-04-2016 RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 Gene3D G3DSA:3.30.70.270 504 663 8.7E-48 T 26-04-2016 RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 Pfam PF00672 HAMP domain 306 364 7.8E-7 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 382 499 3.9E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 Gene3D G3DSA:3.30.450.20 90 188 1.6E-14 T 26-04-2016 RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 Gene3D G3DSA:3.30.450.20 366 490 8.0E-15 T 26-04-2016 RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 SMART SM00267 492 667 2.2E-51 T 26-04-2016 IPR000160 GGDEF domain RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 SUPERFAMILY SSF55785 366 490 2.44E-15 T 26-04-2016 IPR000014 PAS domain RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 Pfam PF13426 PAS domain 391 490 1.2E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 499 662 1.2E-41 T 26-04-2016 IPR000160 GGDEF domain RGE_RS14025 b52d4f1df2d3b12f0f60bd280c4cc895 667 Pfam PF00990 Diguanylate cyclase, GGDEF domain 503 661 3.4E-40 T 26-04-2016 IPR000160 GGDEF domain RGE_RS14390 b2e44183eb1e06766f326ebcc37d1fe0 245 PANTHER PTHR26402 17 244 1.8E-75 T 26-04-2016 RGE_RS14390 b2e44183eb1e06766f326ebcc37d1fe0 245 SMART SM00862 165 241 2.0E-19 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS14390 b2e44183eb1e06766f326ebcc37d1fe0 245 Gene3D G3DSA:3.40.50.2300 17 136 2.0E-36 T 26-04-2016 RGE_RS14390 b2e44183eb1e06766f326ebcc37d1fe0 245 Gene3D G3DSA:1.10.10.10 141 243 1.6E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14390 b2e44183eb1e06766f326ebcc37d1fe0 245 Pfam PF00072 Response regulator receiver domain 19 127 4.4E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS14390 b2e44183eb1e06766f326ebcc37d1fe0 245 SUPERFAMILY SSF46894 141 242 1.5E-18 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS14390 b2e44183eb1e06766f326ebcc37d1fe0 245 SUPERFAMILY SSF52172 16 137 1.39E-38 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS14390 b2e44183eb1e06766f326ebcc37d1fe0 245 PANTHER PTHR26402:SF531 17 244 1.8E-75 T 26-04-2016 RGE_RS14390 b2e44183eb1e06766f326ebcc37d1fe0 245 Pfam PF00486 Transcriptional regulatory protein, C terminal 170 241 4.6E-17 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS14390 b2e44183eb1e06766f326ebcc37d1fe0 245 SMART SM00448 17 127 2.1E-37 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08165 bac3ab41ed19ae908fd27c6b90ee671d 335 Gene3D G3DSA:1.10.1040.10 198 319 2.1E-32 T 26-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RGE_RS08165 bac3ab41ed19ae908fd27c6b90ee671d 335 PANTHER PTHR21708 139 321 4.3E-124 T 26-04-2016 RGE_RS08165 bac3ab41ed19ae908fd27c6b90ee671d 335 PANTHER PTHR21708 1 123 4.3E-124 T 26-04-2016 RGE_RS08165 bac3ab41ed19ae908fd27c6b90ee671d 335 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 171 7.9E-26 T 26-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS08165 bac3ab41ed19ae908fd27c6b90ee671d 335 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 198 318 5.2E-28 T 26-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS08165 bac3ab41ed19ae908fd27c6b90ee671d 335 Gene3D G3DSA:3.40.50.720 1 195 6.2E-53 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS08165 bac3ab41ed19ae908fd27c6b90ee671d 335 SUPERFAMILY SSF51735 1 186 1.42E-18 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS08165 bac3ab41ed19ae908fd27c6b90ee671d 335 PANTHER PTHR21708:SF29 139 321 4.3E-124 T 26-04-2016 RGE_RS08165 bac3ab41ed19ae908fd27c6b90ee671d 335 PANTHER PTHR21708:SF29 1 123 4.3E-124 T 26-04-2016 RGE_RS08165 bac3ab41ed19ae908fd27c6b90ee671d 335 SUPERFAMILY SSF48179 198 318 9.52E-31 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS04900 dc96ce7bcc9b2abf91e957b65158878c 158 SMART SM00344 3 112 2.8E-38 T 26-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RGE_RS04900 dc96ce7bcc9b2abf91e957b65158878c 158 Gene3D G3DSA:1.10.10.10 2 51 1.1E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04900 dc96ce7bcc9b2abf91e957b65158878c 158 SUPERFAMILY SSF54909 64 152 2.82E-17 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS04900 dc96ce7bcc9b2abf91e957b65158878c 158 SUPERFAMILY SSF46785 2 89 2.21E-13 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04900 dc96ce7bcc9b2abf91e957b65158878c 158 PANTHER PTHR30154 3 153 3.7E-50 T 26-04-2016 RGE_RS04900 dc96ce7bcc9b2abf91e957b65158878c 158 Gene3D G3DSA:3.30.70.920 56 140 1.1E-24 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS04900 dc96ce7bcc9b2abf91e957b65158878c 158 Pfam PF01037 Lrp/AsnC ligand binding domain 69 142 1.8E-19 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS04900 dc96ce7bcc9b2abf91e957b65158878c 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 9.1E-9 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS04900 dc96ce7bcc9b2abf91e957b65158878c 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 9.1E-9 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS04900 dc96ce7bcc9b2abf91e957b65158878c 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 9.1E-9 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS04900 dc96ce7bcc9b2abf91e957b65158878c 158 Pfam PF13404 AsnC-type helix-turn-helix domain 3 44 4.7E-14 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS04900 dc96ce7bcc9b2abf91e957b65158878c 158 PANTHER PTHR30154:SF28 3 153 3.7E-50 T 26-04-2016 RGE_RS17480 d9c469caccc2664507adecc8bb31f7f9 79 Pfam PF00301 Rubredoxin 24 69 2.8E-20 T 26-04-2016 IPR024935 Rubredoxin domain GO:0005506 RGE_RS17480 d9c469caccc2664507adecc8bb31f7f9 79 SUPERFAMILY SSF57802 23 73 1.61E-19 T 26-04-2016 RGE_RS17480 d9c469caccc2664507adecc8bb31f7f9 79 Gene3D G3DSA:2.20.28.10 23 70 7.5E-21 T 26-04-2016 IPR004039 Rubredoxin-type fold RGE_RS17480 d9c469caccc2664507adecc8bb31f7f9 79 ProSitePatterns PS00202 Rubredoxin signature. 53 63 - T 26-04-2016 IPR018527 Rubredoxin, iron-binding site GO:0046872 RGE_RS17480 d9c469caccc2664507adecc8bb31f7f9 79 PRINTS PR00163 Rubredoxin signature 23 39 1.5E-9 T 26-04-2016 IPR024935 Rubredoxin domain GO:0005506 RGE_RS17480 d9c469caccc2664507adecc8bb31f7f9 79 PRINTS PR00163 Rubredoxin signature 53 69 1.5E-9 T 26-04-2016 IPR024935 Rubredoxin domain GO:0005506 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 SUPERFAMILY SSF55931 104 470 7.16E-140 T 26-04-2016 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 Pfam PF00120 Glutamine synthetase, catalytic domain 105 468 1.0E-136 T 26-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 7 470 4.5E-199 T 26-04-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 SMART SM01230 104 381 1.1E-147 T 26-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 SUPERFAMILY SSF54368 4 102 3.01E-36 T 26-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 Gene3D G3DSA:3.30.590.10 108 458 1.7E-137 T 26-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 PANTHER PTHR20852 4 140 2.0E-254 T 26-04-2016 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 PANTHER PTHR20852 162 471 2.0E-254 T 26-04-2016 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 ProSitePatterns PS00180 Glutamine synthetase signature 1. 52 70 - T 26-04-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 261 276 - T 26-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 16 97 7.5E-30 T 26-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 PANTHER PTHR20852:SF15 4 140 2.0E-254 T 26-04-2016 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 PANTHER PTHR20852:SF15 162 471 2.0E-254 T 26-04-2016 RGE_RS07055 ef0b0e4d72eb7809985d5a5a6f43537c 471 Gene3D G3DSA:3.10.20.70 5 107 1.5E-41 T 26-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS01555 409fea2be5d763266aedac1ea3f0b7ce 233 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 3.2E-50 T 26-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RGE_RS01555 409fea2be5d763266aedac1ea3f0b7ce 233 PIRSF PIRSF002155 1 227 6.0E-77 T 26-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 RGE_RS01555 409fea2be5d763266aedac1ea3f0b7ce 233 PANTHER PTHR23105:SF5 19 229 6.7E-75 T 26-04-2016 RGE_RS01555 409fea2be5d763266aedac1ea3f0b7ce 233 Gene3D G3DSA:3.40.50.790 69 159 2.9E-41 T 26-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RGE_RS01555 409fea2be5d763266aedac1ea3f0b7ce 233 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 1.9E-103 T 26-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RGE_RS01555 409fea2be5d763266aedac1ea3f0b7ce 233 SUPERFAMILY SSF56808 6 226 1.29E-79 T 26-04-2016 IPR023674 Ribosomal protein L1-like RGE_RS01555 409fea2be5d763266aedac1ea3f0b7ce 233 PANTHER PTHR23105 19 229 6.7E-75 T 26-04-2016 RGE_RS01555 409fea2be5d763266aedac1ea3f0b7ce 233 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 26-04-2016 IPR023673 Ribosomal protein L1, conserved site RGE_RS01555 409fea2be5d763266aedac1ea3f0b7ce 233 Gene3D G3DSA:3.30.190.20 161 227 3.7E-45 T 26-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 RGE_RS01555 409fea2be5d763266aedac1ea3f0b7ce 233 Gene3D G3DSA:3.30.190.20 17 68 3.7E-45 T 26-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 RGE_RS01555 409fea2be5d763266aedac1ea3f0b7ce 233 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.941 T 26-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 958 1075 9.8E-34 T 26-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Gene3D G3DSA:3.40.366.10 1237 1373 1.3E-53 T 26-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Gene3D G3DSA:3.40.366.10 1445 1548 1.3E-53 T 26-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SUPERFAMILY SSF53901 1103 1123 6.86E-78 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SUPERFAMILY SSF53901 846 1071 6.86E-78 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SUPERFAMILY SSF53901 682 802 6.86E-78 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SUPERFAMILY SSF51735 2141 2180 7.27E-36 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Pfam PF03060 Nitronate monooxygenase 318 659 3.4E-10 T 26-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SMART SM00825 Beta-ketoacyl synthase 686 1128 4.4E-113 T 26-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 863 879 - T 26-04-2016 IPR018201 Beta-ketoacyl synthase, active site RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2140 2367 2.7E-31 T 26-04-2016 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SUPERFAMILY SSF51735 1926 2122 2.92E-10 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Gene3D G3DSA:3.40.50.720 2139 2178 1.9E-42 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Gene3D G3DSA:3.40.50.720 2226 2392 1.9E-42 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Gene3D G3DSA:3.30.70.250 1383 1443 5.8E-8 T 26-04-2016 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Pfam PF00698 Acyl transferase domain 1241 1541 8.0E-33 T 26-04-2016 IPR014043 Acyl transferase RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SUPERFAMILY SSF47336 1804 1892 9.95E-10 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 PANTHER PTHR11712:SF234 2481 2720 0.0 T 26-04-2016 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 PANTHER PTHR11712:SF234 148 815 0.0 T 26-04-2016 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 PANTHER PTHR11712:SF234 834 1637 0.0 T 26-04-2016 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SUPERFAMILY SSF55048 1384 1445 9.68E-9 T 26-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Gene3D G3DSA:3.40.47.10 686 963 2.1E-74 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SMART SM00826 2441 2604 5.1E-6 T 26-04-2016 IPR020807 Polyketide synthase, dehydratase domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Gene3D G3DSA:1.10.1200.10 1803 1853 1.1E-10 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Pfam PF00550 Phosphopantetheine attachment site 1812 1855 1.3E-5 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SUPERFAMILY SSF52151 1447 1549 2.01E-53 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SUPERFAMILY SSF52151 1237 1379 2.01E-53 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SUPERFAMILY SSF51735 2220 2407 7.27E-36 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 685 950 1.2E-71 T 26-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Gene3D G3DSA:3.40.47.10 964 1129 9.3E-50 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SUPERFAMILY SSF51412 316 584 7.78E-13 T 26-04-2016 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 1241 1553 6.0E-36 T 26-04-2016 IPR020801 Polyketide synthase, acyl transferase domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 SUPERFAMILY SSF51412 13 181 2.7E-10 T 26-04-2016 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Pfam PF08659 KR domain 2142 2364 1.8E-34 T 26-04-2016 IPR013968 Polyketide synthase, ketoreductase domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Pfam PF14765 Polyketide synthase dehydratase 2443 2720 2.4E-37 T 26-04-2016 IPR020807 Polyketide synthase, dehydratase domain RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 PANTHER PTHR11712 2481 2720 0.0 T 26-04-2016 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 PANTHER PTHR11712 148 815 0.0 T 26-04-2016 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 PANTHER PTHR11712 834 1637 0.0 T 26-04-2016 RGE_RS15150 5989c9eccddbb12480682eaf70bca235 2739 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 1078 1169 5.2E-8 T 26-04-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension RGE_RS02685 b1b7ceaedf38bcf02a9876e0246bf45e 229 Pfam PF00072 Response regulator receiver domain 5 119 5.4E-18 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS02685 b1b7ceaedf38bcf02a9876e0246bf45e 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 224 1.3E-20 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS02685 b1b7ceaedf38bcf02a9876e0246bf45e 229 Gene3D G3DSA:3.40.50.2300 1 149 1.2E-33 T 26-04-2016 RGE_RS02685 b1b7ceaedf38bcf02a9876e0246bf45e 229 SMART SM00448 3 118 3.1E-33 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS02685 b1b7ceaedf38bcf02a9876e0246bf45e 229 Gene3D G3DSA:1.10.10.10 150 225 3.2E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02685 b1b7ceaedf38bcf02a9876e0246bf45e 229 PANTHER PTHR26402:SF573 3 224 1.4E-85 T 26-04-2016 RGE_RS02685 b1b7ceaedf38bcf02a9876e0246bf45e 229 PANTHER PTHR26402 3 224 1.4E-85 T 26-04-2016 RGE_RS02685 b1b7ceaedf38bcf02a9876e0246bf45e 229 SUPERFAMILY SSF52172 2 135 5.41E-34 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS02685 b1b7ceaedf38bcf02a9876e0246bf45e 229 SUPERFAMILY SSF46894 136 225 3.12E-22 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS02685 b1b7ceaedf38bcf02a9876e0246bf45e 229 SMART SM00862 148 224 5.3E-21 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS05420 4ba4d4650712df50ca75732299395d34 337 PANTHER PTHR11203 10 217 1.6E-69 T 26-04-2016 RGE_RS05420 4ba4d4650712df50ca75732299395d34 337 Gene3D G3DSA:3.60.15.10 29 143 1.5E-11 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS05420 4ba4d4650712df50ca75732299395d34 337 PANTHER PTHR11203:SF35 10 217 1.6E-69 T 26-04-2016 RGE_RS05420 4ba4d4650712df50ca75732299395d34 337 TIGRFAM TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated 5 331 4.1E-142 T 26-04-2016 IPR026360 Putative exonuclease, DNA ligase-associated RGE_RS05420 4ba4d4650712df50ca75732299395d34 337 SUPERFAMILY SSF56281 12 320 3.52E-50 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS18700 4777ae4644b3e9c28dcab9dca0b37733 229 PANTHER PTHR39168 5 229 9.1E-50 T 26-04-2016 RGE_RS18700 4777ae4644b3e9c28dcab9dca0b37733 229 PANTHER PTHR39168:SF1 5 229 9.1E-50 T 26-04-2016 RGE_RS18700 4777ae4644b3e9c28dcab9dca0b37733 229 Gene3D G3DSA:1.10.10.10 4 94 6.4E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18700 4777ae4644b3e9c28dcab9dca0b37733 229 Pfam PF12840 Helix-turn-helix domain 11 70 8.1E-10 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18700 4777ae4644b3e9c28dcab9dca0b37733 229 SMART SM00418 11 90 4.4E-16 T 26-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RGE_RS18700 4777ae4644b3e9c28dcab9dca0b37733 229 SUPERFAMILY SSF46785 2 88 4.09E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS08315 75c2df466b7e991ca89ab4266f1305af 289 PANTHER PTHR30244:SF1 3 288 1.2E-107 T 26-04-2016 RGE_RS08315 75c2df466b7e991ca89ab4266f1305af 289 Gene3D G3DSA:1.20.1330.10 54 244 5.1E-49 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS08315 75c2df466b7e991ca89ab4266f1305af 289 Pfam PF00700 Bacterial flagellin C-terminal helical region 202 287 2.8E-26 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS08315 75c2df466b7e991ca89ab4266f1305af 289 PRINTS PR00207 Flagellin signature 111 134 5.7E-22 T 26-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RGE_RS08315 75c2df466b7e991ca89ab4266f1305af 289 PRINTS PR00207 Flagellin signature 37 54 5.7E-22 T 26-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RGE_RS08315 75c2df466b7e991ca89ab4266f1305af 289 PRINTS PR00207 Flagellin signature 76 95 5.7E-22 T 26-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RGE_RS08315 75c2df466b7e991ca89ab4266f1305af 289 SUPERFAMILY SSF64518 1 288 2.88E-87 T 26-04-2016 RGE_RS08315 75c2df466b7e991ca89ab4266f1305af 289 PANTHER PTHR30244 3 288 1.2E-107 T 26-04-2016 RGE_RS08315 75c2df466b7e991ca89ab4266f1305af 289 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 139 4.5E-42 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS03625 f8fdc43a1cda4f054273ae48a9c2bdb4 224 Gene3D G3DSA:3.40.50.2300 1 129 4.1E-36 T 26-04-2016 RGE_RS03625 f8fdc43a1cda4f054273ae48a9c2bdb4 224 SMART SM00862 153 224 8.6E-25 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS03625 f8fdc43a1cda4f054273ae48a9c2bdb4 224 PANTHER PTHR26402:SF279 1 224 7.4E-92 T 26-04-2016 RGE_RS03625 f8fdc43a1cda4f054273ae48a9c2bdb4 224 Gene3D G3DSA:1.10.10.10 132 224 1.9E-27 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS03625 f8fdc43a1cda4f054273ae48a9c2bdb4 224 PANTHER PTHR26402 1 224 7.4E-92 T 26-04-2016 RGE_RS03625 f8fdc43a1cda4f054273ae48a9c2bdb4 224 SUPERFAMILY SSF52172 1 179 2.09E-35 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS03625 f8fdc43a1cda4f054273ae48a9c2bdb4 224 Pfam PF00072 Response regulator receiver domain 4 121 4.2E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS03625 f8fdc43a1cda4f054273ae48a9c2bdb4 224 SMART SM00448 1 120 6.9E-35 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS03625 f8fdc43a1cda4f054273ae48a9c2bdb4 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 224 1.3E-21 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS16230 ee93585059268067cca227583502ff13 290 PANTHER PTHR21666:SF222 138 288 6.8E-37 T 26-04-2016 RGE_RS16230 ee93585059268067cca227583502ff13 290 PANTHER PTHR21666 138 288 6.8E-37 T 26-04-2016 RGE_RS16230 ee93585059268067cca227583502ff13 290 Gene3D G3DSA:3.10.350.10 53 99 9.7E-14 T 26-04-2016 IPR018392 LysM domain RGE_RS16230 ee93585059268067cca227583502ff13 290 SMART SM00257 55 99 2.7E-7 T 26-04-2016 IPR018392 LysM domain RGE_RS16230 ee93585059268067cca227583502ff13 290 Pfam PF01476 LysM domain 56 98 6.0E-10 T 26-04-2016 IPR018392 LysM domain RGE_RS16230 ee93585059268067cca227583502ff13 290 Pfam PF01551 Peptidase family M23 190 283 3.6E-28 T 26-04-2016 IPR016047 Peptidase M23 RGE_RS16230 ee93585059268067cca227583502ff13 290 Gene3D G3DSA:2.70.70.10 158 288 2.3E-36 T 26-04-2016 RGE_RS16230 ee93585059268067cca227583502ff13 290 SUPERFAMILY SSF51261 55 287 5.13E-45 T 26-04-2016 IPR011055 Duplicated hybrid motif RGE_RS11565 b5ab67aaf63aec5fa8d8f51067e7d412 261 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 18 258 8.1E-72 T 26-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RGE_RS11565 b5ab67aaf63aec5fa8d8f51067e7d412 261 PANTHER PTHR30616:SF3 205 261 2.1E-92 T 26-04-2016 RGE_RS11565 b5ab67aaf63aec5fa8d8f51067e7d412 261 PANTHER PTHR30616:SF3 1 188 2.1E-92 T 26-04-2016 RGE_RS11565 b5ab67aaf63aec5fa8d8f51067e7d412 261 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 43 259 1.3E-47 T 26-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RGE_RS11565 b5ab67aaf63aec5fa8d8f51067e7d412 261 Gene3D G3DSA:3.60.140.10 2 260 6.6E-90 T 26-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RGE_RS11565 b5ab67aaf63aec5fa8d8f51067e7d412 261 PANTHER PTHR30616 205 261 2.1E-92 T 26-04-2016 RGE_RS11565 b5ab67aaf63aec5fa8d8f51067e7d412 261 PANTHER PTHR30616 1 188 2.1E-92 T 26-04-2016 RGE_RS11565 b5ab67aaf63aec5fa8d8f51067e7d412 261 SUPERFAMILY SSF64438 2 260 5.86E-72 T 26-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic RGE_RS07165 5cac11d87fd7fa89ca0e201e96faacce 255 PANTHER PTHR21600 1 252 8.4E-63 T 26-04-2016 RGE_RS07165 5cac11d87fd7fa89ca0e201e96faacce 255 Pfam PF00849 RNA pseudouridylate synthase 73 218 1.0E-10 T 26-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS07165 5cac11d87fd7fa89ca0e201e96faacce 255 SUPERFAMILY SSF55174 12 100 1.2E-11 T 26-04-2016 RGE_RS07165 5cac11d87fd7fa89ca0e201e96faacce 255 Pfam PF01479 S4 domain 13 45 2.3E-5 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS07165 5cac11d87fd7fa89ca0e201e96faacce 255 SUPERFAMILY SSF55120 90 253 3.84E-36 T 26-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS07165 5cac11d87fd7fa89ca0e201e96faacce 255 PANTHER PTHR21600:SF25 1 252 8.4E-63 T 26-04-2016 RGE_RS07165 5cac11d87fd7fa89ca0e201e96faacce 255 SMART SM00363 12 68 0.0026 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS07165 5cac11d87fd7fa89ca0e201e96faacce 255 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 116 248 3.5E-37 T 26-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RGE_RS07165 5cac11d87fd7fa89ca0e201e96faacce 255 Gene3D G3DSA:3.10.290.10 10 64 2.5E-12 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS09190 4d5016c5dee7935224e6a87c5168ae4e 260 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 248 3.2E-98 T 26-04-2016 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 RGE_RS09190 4d5016c5dee7935224e6a87c5168ae4e 260 Gene3D G3DSA:3.40.1010.10 2 110 1.4E-29 T 26-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RGE_RS09190 4d5016c5dee7935224e6a87c5168ae4e 260 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 208 1.9E-43 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09190 4d5016c5dee7935224e6a87c5168ae4e 260 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 76 109 - T 26-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RGE_RS09190 4d5016c5dee7935224e6a87c5168ae4e 260 Gene3D G3DSA:3.30.950.10 111 231 3.7E-41 T 26-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RGE_RS09190 4d5016c5dee7935224e6a87c5168ae4e 260 SUPERFAMILY SSF53790 2 247 2.62E-62 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09190 4d5016c5dee7935224e6a87c5168ae4e 260 PANTHER PTHR21091 1 208 9.3E-61 T 26-04-2016 RGE_RS09190 4d5016c5dee7935224e6a87c5168ae4e 260 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 26-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RGE_RS09190 4d5016c5dee7935224e6a87c5168ae4e 260 PANTHER PTHR21091:SF17 1 208 9.3E-61 T 26-04-2016 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 SMART SM00091 135 201 2.7E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 Gene3D G3DSA:3.30.450.20 127 245 6.2E-18 T 26-04-2016 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 SMART SM00388 274 339 2.8E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 Pfam PF00512 His Kinase A (phospho-acceptor) domain 274 338 3.2E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 Pfam PF00072 Response regulator receiver domain 527 637 4.1E-26 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 SUPERFAMILY SSF55785 126 245 3.06E-20 T 26-04-2016 IPR000014 PAS domain RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 Gene3D G3DSA:3.30.565.10 340 502 2.8E-44 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 SUPERFAMILY SSF55874 328 496 5.37E-42 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 Gene3D G3DSA:3.40.50.2300 523 643 3.6E-42 T 26-04-2016 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 SUPERFAMILY SSF52172 523 643 8.68E-40 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 385 499 1.8E-24 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 Pfam PF08448 PAS fold 142 249 1.6E-17 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 Gene3D G3DSA:1.10.287.130 266 335 1.7E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 SUPERFAMILY SSF47384 259 340 2.35E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 131 254 2.6E-12 T 26-04-2016 IPR000014 PAS domain RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 PANTHER PTHR24423 117 642 2.5E-165 T 26-04-2016 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 SMART SM00448 525 637 3.4E-37 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 SMART SM00387 385 501 8.6E-34 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 454 3.1E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 PRINTS PR00344 Bacterial sensor protein C-terminal signature 485 498 3.1E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 440 3.1E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04770 8974fedc8446e47d4df2a532c8594044 648 PRINTS PR00344 Bacterial sensor protein C-terminal signature 461 479 3.1E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17910 180303a3836eecc07e36e177c520782f 490 PANTHER PTHR11780:SF0 2 489 2.0E-204 T 26-04-2016 RGE_RS17910 180303a3836eecc07e36e177c520782f 490 SUPERFAMILY SSF142984 322 403 7.06E-21 T 26-04-2016 RGE_RS17910 180303a3836eecc07e36e177c520782f 490 SMART SM00928 408 453 2.1E-18 T 26-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RGE_RS17910 180303a3836eecc07e36e177c520782f 490 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 136 298 5.1E-45 T 26-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain RGE_RS17910 180303a3836eecc07e36e177c520782f 490 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 421 432 - T 26-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RGE_RS17910 180303a3836eecc07e36e177c520782f 490 SUPERFAMILY SSF140490 405 489 4.05E-26 T 26-04-2016 RGE_RS17910 180303a3836eecc07e36e177c520782f 490 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 410 489 1.6E-29 T 26-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RGE_RS17910 180303a3836eecc07e36e177c520782f 490 SUPERFAMILY SSF142019 87 319 1.1E-76 T 26-04-2016 RGE_RS17910 180303a3836eecc07e36e177c520782f 490 PANTHER PTHR11780 2 489 2.0E-204 T 26-04-2016 RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 SMART SM01185 67 120 2.7E-18 T 26-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 Hamap MF_00141 Elongation factor P [efp]. 1 184 45.554 T 26-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 PIRSF PIRSF005901 1 184 4.5E-54 T 26-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 TIGRFAM TIGR00038 efp: translation elongation factor P 4 184 4.9E-62 T 26-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 SUPERFAMILY SSF50104 1 62 3.73E-16 T 26-04-2016 IPR008991 Translation protein SH3-like domain RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 SUPERFAMILY SSF50249 65 126 6.43E-16 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 SMART SM00841 128 183 3.9E-21 T 26-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 60 2.6E-20 T 26-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 Gene3D G3DSA:2.40.50.140 65 126 1.4E-20 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 Gene3D G3DSA:2.40.50.140 127 184 7.3E-22 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 SUPERFAMILY SSF50249 133 184 3.6E-13 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 Gene3D G3DSA:2.30.30.30 1 62 4.4E-19 T 26-04-2016 IPR014722 Ribosomal protein L2 domain 2 RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 120 2.6E-17 T 26-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 Pfam PF09285 Elongation factor P, C-terminal 134 183 4.6E-20 T 26-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 RGE_RS07965 eff46634ac09af813ca0a4d68d0bbe00 184 PANTHER PTHR30053 1 184 1.2E-66 T 26-04-2016 RGE_RS09665 98d4e4ee39c3a9640e5083e02fef2ba6 394 PANTHER PTHR30435 272 392 1.9E-62 T 26-04-2016 RGE_RS09665 98d4e4ee39c3a9640e5083e02fef2ba6 394 PANTHER PTHR30435 1 117 1.9E-62 T 26-04-2016 RGE_RS09665 98d4e4ee39c3a9640e5083e02fef2ba6 394 SUPERFAMILY SSF117143 73 355 1.14E-64 T 26-04-2016 RGE_RS09665 98d4e4ee39c3a9640e5083e02fef2ba6 394 Pfam PF07559 Flagellar basal body protein FlaE 168 275 4.5E-12 T 26-04-2016 IPR011491 Flagellar hook protein FlgE RGE_RS09665 98d4e4ee39c3a9640e5083e02fef2ba6 394 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 315 392 2.0E-16 T 26-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RGE_RS09665 98d4e4ee39c3a9640e5083e02fef2ba6 394 Pfam PF00460 Flagella basal body rod protein 4 33 8.0E-6 T 26-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RGE_RS09665 98d4e4ee39c3a9640e5083e02fef2ba6 394 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 376 6.3E-73 T 26-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RGE_RS09665 98d4e4ee39c3a9640e5083e02fef2ba6 394 PANTHER PTHR30435:SF1 272 392 1.9E-62 T 26-04-2016 RGE_RS09665 98d4e4ee39c3a9640e5083e02fef2ba6 394 PANTHER PTHR30435:SF1 1 117 1.9E-62 T 26-04-2016 RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 ProSitePatterns PS00692 NifH/frxC family signature 2. 158 171 - T 26-04-2016 IPR030655 NifH/chlL conserved site RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 PANTHER PTHR13696 40 290 2.4E-108 T 26-04-2016 RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 SUPERFAMILY SSF52540 36 298 2.97E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 PIRSF PIRSF000363 35 302 4.7E-107 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 ProSitePatterns PS00746 NifH/frxC family signature 1. 121 133 - T 26-04-2016 IPR030655 NifH/chlL conserved site RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 PRINTS PR00091 Nitrogenase component II signature 157 172 2.4E-32 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 PRINTS PR00091 Nitrogenase component II signature 42 55 2.4E-32 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 PRINTS PR00091 Nitrogenase component II signature 119 133 2.4E-32 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 PRINTS PR00091 Nitrogenase component II signature 64 79 2.4E-32 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 Gene3D G3DSA:3.40.50.300 37 299 9.9E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 Hamap MF_00355 Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein [bchL]. 37 302 53.468 T 26-04-2016 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein GO:0005524|GO:0015995|GO:0016730|GO:0019685|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 PANTHER PTHR13696:SF74 40 290 2.4E-108 T 26-04-2016 RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 39 299 1.2E-87 T 26-04-2016 RGE_RS16315 40286c1a5f86820031bfdad8f9d6603b 302 TIGRFAM TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein 38 300 1.9E-137 T 26-04-2016 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein GO:0005524|GO:0015995|GO:0016730|GO:0019685|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 SUPERFAMILY SSF49452 175 305 1.21E-15 T 26-04-2016 IPR013784 Carbohydrate-binding-like fold GO:0030246 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 Gene3D G3DSA:2.60.40.10 441 536 1.8E-11 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 SUPERFAMILY SSF81296 437 540 3.92E-15 T 26-04-2016 IPR014756 Immunoglobulin E-set RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 Pfam PF11852 Domain of unknown function (DUF3372) 1010 1173 1.4E-48 T 26-04-2016 IPR024561 Alpha-1,6-glucosidases, pullulanase-type, C-terminal RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 SUPERFAMILY SSF51445 557 1069 3.64E-119 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 SUPERFAMILY SSF49452 62 164 1.21E-13 T 26-04-2016 IPR013784 Carbohydrate-binding-like fold GO:0030246 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 Gene3D G3DSA:3.20.20.80 896 1009 1.6E-75 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 Gene3D G3DSA:3.20.20.80 1047 1070 1.6E-75 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 Gene3D G3DSA:3.20.20.80 560 846 1.6E-75 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 Pfam PF03714 Bacterial pullanase-associated domain 62 162 3.7E-12 T 26-04-2016 IPR005323 Bacterial pullanase-associated domain GO:0005975|GO:0030246 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 Pfam PF03714 Bacterial pullanase-associated domain 176 301 1.2E-14 T 26-04-2016 IPR005323 Bacterial pullanase-associated domain GO:0005975|GO:0030246 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 PANTHER PTHR10357 651 810 1.7E-188 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 PANTHER PTHR10357 1047 1174 1.7E-188 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 PANTHER PTHR10357 829 1023 1.7E-188 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 PANTHER PTHR10357 422 629 1.7E-188 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 PANTHER PTHR10357 398 403 1.7E-188 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 PANTHER PTHR10357:SF99 651 810 1.7E-188 T 26-04-2016 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 PANTHER PTHR10357:SF99 1047 1174 1.7E-188 T 26-04-2016 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 PANTHER PTHR10357:SF99 829 1023 1.7E-188 T 26-04-2016 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 PANTHER PTHR10357:SF99 422 629 1.7E-188 T 26-04-2016 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 PANTHER PTHR10357:SF99 398 403 1.7E-188 T 26-04-2016 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 440 524 5.3E-9 T 26-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 SUPERFAMILY SSF81296 303 430 1.96E-14 T 26-04-2016 IPR014756 Immunoglobulin E-set RGE_RS01300 348ae32612bfd85f1c3dd4a2df9852f6 1175 SUPERFAMILY SSF51011 1072 1174 2.95E-13 T 26-04-2016 RGE_RS20570 b5d87c2a4ded5557646e7595937da2d1 281 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 4 276 27.889 T 26-04-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS20570 b5d87c2a4ded5557646e7595937da2d1 281 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 9 91 1.2E-19 T 26-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS20570 b5d87c2a4ded5557646e7595937da2d1 281 PANTHER PTHR21089 5 278 6.5E-106 T 26-04-2016 RGE_RS20570 b5d87c2a4ded5557646e7595937da2d1 281 Gene3D G3DSA:3.40.192.10 4 108 3.0E-31 T 26-04-2016 RGE_RS20570 b5d87c2a4ded5557646e7595937da2d1 281 SUPERFAMILY SSF51735 104 275 3.72E-36 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20570 b5d87c2a4ded5557646e7595937da2d1 281 SUPERFAMILY SSF53223 4 102 3.4E-25 T 26-04-2016 RGE_RS20570 b5d87c2a4ded5557646e7595937da2d1 281 PANTHER PTHR21089:SF2 5 278 6.5E-106 T 26-04-2016 RGE_RS20570 b5d87c2a4ded5557646e7595937da2d1 281 Gene3D G3DSA:3.40.50.720 109 251 1.4E-38 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20570 b5d87c2a4ded5557646e7595937da2d1 281 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 7 275 9.1E-67 T 26-04-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS20570 b5d87c2a4ded5557646e7595937da2d1 281 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 119 197 9.8E-8 T 26-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RGE_RS11435 6b32e13067ae00976fc98520ebea3f1e 299 SUPERFAMILY SSF52151 39 295 2.62E-59 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS11435 6b32e13067ae00976fc98520ebea3f1e 299 Gene3D G3DSA:3.40.1090.10 36 208 2.6E-19 T 26-04-2016 RGE_RS11435 6b32e13067ae00976fc98520ebea3f1e 299 Pfam PF01734 Patatin-like phospholipase 48 205 5.4E-23 T 26-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RGE_RS11435 6b32e13067ae00976fc98520ebea3f1e 299 PANTHER PTHR14226 44 294 2.3E-71 T 26-04-2016 RGE_RS11435 6b32e13067ae00976fc98520ebea3f1e 299 PANTHER PTHR14226:SF24 44 294 2.3E-71 T 26-04-2016 RGE_RS23135 8627ca2cd858a5684686b727ebeba16a 460 PANTHER PTHR24423 124 155 1.0E-26 T 26-04-2016 RGE_RS23135 8627ca2cd858a5684686b727ebeba16a 460 PANTHER PTHR24423 236 444 1.0E-26 T 26-04-2016 RGE_RS23135 8627ca2cd858a5684686b727ebeba16a 460 SUPERFAMILY SSF55874 326 446 2.36E-21 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23135 8627ca2cd858a5684686b727ebeba16a 460 SMART SM00387 353 460 9.0E-14 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23135 8627ca2cd858a5684686b727ebeba16a 460 SUPERFAMILY SSF47384 240 313 5.3E-9 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23135 8627ca2cd858a5684686b727ebeba16a 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 456 7.2E-11 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23135 8627ca2cd858a5684686b727ebeba16a 460 SMART SM00388 257 315 2.8E-6 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23135 8627ca2cd858a5684686b727ebeba16a 460 Gene3D G3DSA:1.10.287.130 255 309 1.7E-9 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23135 8627ca2cd858a5684686b727ebeba16a 460 Gene3D G3DSA:3.30.565.10 342 447 1.2E-19 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23135 8627ca2cd858a5684686b727ebeba16a 460 Pfam PF00672 HAMP domain 185 249 6.8E-8 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS08190 b214958470e1ddab76d0e7f47db0ffbc 76 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 12 66 6.2E-20 T 26-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RGE_RS08190 b214958470e1ddab76d0e7f47db0ffbc 76 Pfam PF02609 Exonuclease VII small subunit 13 63 4.3E-18 T 26-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RGE_RS08190 b214958470e1ddab76d0e7f47db0ffbc 76 SUPERFAMILY SSF116842 7 73 7.45E-19 T 26-04-2016 RGE_RS08190 b214958470e1ddab76d0e7f47db0ffbc 76 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 12 53 4.0E-9 T 26-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RGE_RS08190 b214958470e1ddab76d0e7f47db0ffbc 76 PIRSF PIRSF006488 1 76 6.7E-20 T 26-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RGE_RS08190 b214958470e1ddab76d0e7f47db0ffbc 76 Gene3D G3DSA:1.10.287.1040 8 73 2.2E-22 T 26-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RGE_RS08190 b214958470e1ddab76d0e7f47db0ffbc 76 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 12 72 13.564 T 26-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RGE_RS08190 b214958470e1ddab76d0e7f47db0ffbc 76 PANTHER PTHR34137 1 67 1.9E-13 T 26-04-2016 RGE_RS19810 b3258c79a386a6a1604ada65e077da36 202 Pfam PF00034 Cytochrome c 119 202 5.7E-9 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS19810 b3258c79a386a6a1604ada65e077da36 202 PIRSF PIRSF000005 1 202 3.4E-53 T 26-04-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 RGE_RS19810 b3258c79a386a6a1604ada65e077da36 202 Gene3D G3DSA:1.10.760.10 120 201 1.1E-22 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS19810 b3258c79a386a6a1604ada65e077da36 202 SUPERFAMILY SSF46626 35 105 4.73E-17 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS19810 b3258c79a386a6a1604ada65e077da36 202 Gene3D G3DSA:1.10.760.10 29 105 1.2E-20 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS19810 b3258c79a386a6a1604ada65e077da36 202 PANTHER PTHR33751:SF3 19 201 4.6E-35 T 26-04-2016 RGE_RS19810 b3258c79a386a6a1604ada65e077da36 202 PANTHER PTHR33751 19 201 4.6E-35 T 26-04-2016 RGE_RS19810 b3258c79a386a6a1604ada65e077da36 202 SUPERFAMILY SSF46626 117 201 2.76E-20 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10480 48e9ab22c553992e12dbe2c31cbc419b 185 SUPERFAMILY SSF52980 2 182 6.43E-68 T 26-04-2016 IPR011335 Restriction endonuclease type II-like RGE_RS10480 48e9ab22c553992e12dbe2c31cbc419b 185 Gene3D G3DSA:3.10.640.10 1 181 1.5E-76 T 26-04-2016 RGE_RS10480 48e9ab22c553992e12dbe2c31cbc419b 185 Pfam PF07152 YaeQ protein 1 177 5.0E-75 T 26-04-2016 IPR009822 YaeQ RGE_RS10480 48e9ab22c553992e12dbe2c31cbc419b 185 PANTHER PTHR38784 1 185 1.1E-74 T 26-04-2016 RGE_RS10480 48e9ab22c553992e12dbe2c31cbc419b 185 PANTHER PTHR38784:SF1 1 185 1.1E-74 T 26-04-2016 RGE_RS10480 48e9ab22c553992e12dbe2c31cbc419b 185 SMART SM01322 1 180 6.1E-112 T 26-04-2016 IPR009822 YaeQ RGE_RS10480 48e9ab22c553992e12dbe2c31cbc419b 185 PIRSF PIRSF011484 1 185 1.9E-68 T 26-04-2016 IPR009822 YaeQ RGE_RS16060 58a834bde6800b964464464af5af6a5b 195 PANTHER PTHR30446 1 195 1.9E-95 T 26-04-2016 RGE_RS16060 58a834bde6800b964464464af5af6a5b 195 SMART SM00493 79 164 1.1E-11 T 26-04-2016 IPR006171 Toprim domain RGE_RS16060 58a834bde6800b964464464af5af6a5b 195 Hamap MF_00017 Recombination protein RecR [recR]. 1 195 96.17 T 26-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RGE_RS16060 58a834bde6800b964464464af5af6a5b 195 Pfam PF02132 RecR protein 39 77 8.0E-16 T 26-04-2016 IPR023628 Recombination protein RecR, C4-type zinc finger RGE_RS16060 58a834bde6800b964464464af5af6a5b 195 ProSitePatterns PS01300 RecR protein signature. 56 77 - T 26-04-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 RGE_RS16060 58a834bde6800b964464464af5af6a5b 195 PANTHER PTHR30446:SF0 1 195 1.9E-95 T 26-04-2016 RGE_RS16060 58a834bde6800b964464464af5af6a5b 195 Pfam PF13662 Toprim domain 81 170 3.1E-22 T 26-04-2016 IPR006171 Toprim domain RGE_RS16060 58a834bde6800b964464464af5af6a5b 195 SUPERFAMILY SSF111304 4 195 2.35E-69 T 26-04-2016 IPR023627 Recombination protein RecR RGE_RS16060 58a834bde6800b964464464af5af6a5b 195 TIGRFAM TIGR00615 recR: recombination protein RecR 4 195 1.7E-66 T 26-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RGE_RS00470 2f429fc49d5bcf711a36a34b9d61cddf 277 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 12 104 1.4E-11 T 26-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RGE_RS00470 2f429fc49d5bcf711a36a34b9d61cddf 277 SUPERFAMILY SSF48179 167 275 5.95E-33 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS00470 2f429fc49d5bcf711a36a34b9d61cddf 277 Gene3D G3DSA:3.40.50.720 8 164 1.5E-34 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00470 2f429fc49d5bcf711a36a34b9d61cddf 277 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 12 271 7.4E-75 T 26-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RGE_RS00470 2f429fc49d5bcf711a36a34b9d61cddf 277 PIRSF PIRSF000193 9 274 2.5E-66 T 26-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RGE_RS00470 2f429fc49d5bcf711a36a34b9d61cddf 277 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 10 271 25.588 T 26-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RGE_RS00470 2f429fc49d5bcf711a36a34b9d61cddf 277 SUPERFAMILY SSF51735 11 164 8.97E-30 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00470 2f429fc49d5bcf711a36a34b9d61cddf 277 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 226 249 - T 26-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RGE_RS00470 2f429fc49d5bcf711a36a34b9d61cddf 277 PANTHER PTHR11645 7 275 8.7E-89 T 26-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RGE_RS00470 2f429fc49d5bcf711a36a34b9d61cddf 277 PANTHER PTHR11645:SF0 7 275 8.7E-89 T 26-04-2016 RGE_RS00470 2f429fc49d5bcf711a36a34b9d61cddf 277 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 167 271 2.9E-34 T 26-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RGE_RS00470 2f429fc49d5bcf711a36a34b9d61cddf 277 Gene3D G3DSA:1.10.3730.10 167 271 5.9E-35 T 26-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 205 296 7.5E-38 T 26-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 PANTHER PTHR11374:SF18 1 442 9.4E-250 T 26-04-2016 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 424 3.1E-34 T 26-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 PANTHER PTHR11374 1 442 9.4E-250 T 26-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 Gene3D G3DSA:3.40.50.720 2 207 5.0E-77 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2 184 3.9E-64 T 26-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 2 420 1.0E-135 T 26-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 SUPERFAMILY SSF52413 305 434 3.92E-42 T 26-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 SUPERFAMILY SSF51735 2 195 1.24E-55 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 SMART SM00984 320 424 9.4E-54 T 26-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 PIRSF PIRSF000124 1 439 3.7E-152 T 26-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 PIRSF PIRSF500134 1 442 6.7E-192 T 26-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 Gene3D G3DSA:1.20.5.100 208 234 5.9E-17 T 26-04-2016 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 SUPERFAMILY SSF48179 205 300 8.84E-33 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS05315 5937bdce91f357a4eadd160d1443145d 442 Gene3D G3DSA:3.40.50.720 235 440 2.1E-76 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS01215 e472fb03136f9d2d14e30799f86d6f1b 628 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 10 628 33.545 T 26-04-2016 IPR023051 Potassium uptake protein, low affinity, Kup RGE_RS01215 e472fb03136f9d2d14e30799f86d6f1b 628 Pfam PF02705 K+ potassium transporter 19 550 6.5E-205 T 26-04-2016 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 RGE_RS01215 e472fb03136f9d2d14e30799f86d6f1b 628 PANTHER PTHR30540:SF7 14 554 1.4E-220 T 26-04-2016 RGE_RS01215 e472fb03136f9d2d14e30799f86d6f1b 628 PANTHER PTHR30540 14 554 1.4E-220 T 26-04-2016 RGE_RS08490 95ee36ca7000adf072f6af4313a9966d 415 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 245 6.9E-40 T 26-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RGE_RS08490 95ee36ca7000adf072f6af4313a9966d 415 SUPERFAMILY SSF53901 219 413 3.84E-60 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS08490 95ee36ca7000adf072f6af4313a9966d 415 Gene3D G3DSA:3.40.47.10 266 414 1.7E-49 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS08490 95ee36ca7000adf072f6af4313a9966d 415 SMART SM00825 Beta-ketoacyl synthase 5 410 3.0E-15 T 26-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RGE_RS08490 95ee36ca7000adf072f6af4313a9966d 415 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 257 369 1.9E-32 T 26-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RGE_RS08490 95ee36ca7000adf072f6af4313a9966d 415 Gene3D G3DSA:3.40.47.10 2 259 2.0E-55 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS08490 95ee36ca7000adf072f6af4313a9966d 415 SUPERFAMILY SSF53901 3 254 6.76E-57 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS08490 95ee36ca7000adf072f6af4313a9966d 415 PANTHER PTHR11712 3 412 2.6E-118 T 26-04-2016 RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 TIGRFAM TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase 11 686 1.0E-242 T 26-04-2016 IPR014265 Signal transduction histidine kinase, PEP-CTERM system, putative RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 582 687 6.9E-16 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 Gene3D G3DSA:3.30.565.10 552 687 2.7E-29 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 SUPERFAMILY SSF55874 552 687 3.54E-30 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 SMART SM00387 582 689 7.3E-21 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 PRINTS PR00344 Bacterial sensor protein C-terminal signature 649 667 1.9E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 PRINTS PR00344 Bacterial sensor protein C-terminal signature 673 686 1.9E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 PRINTS PR00344 Bacterial sensor protein C-terminal signature 638 648 1.9E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 633 1.9E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 SUPERFAMILY SSF47384 475 538 8.24E-5 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 Gene3D G3DSA:3.30.450.40 315 476 3.6E-9 T 26-04-2016 IPR029016 GAF domain-like RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 PANTHER PTHR24423 412 440 1.5E-33 T 26-04-2016 RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 PANTHER PTHR24423 464 687 1.5E-33 T 26-04-2016 RGE_RS01990 3e47120174d552e6d92ca4e25a7f09bd 700 SUPERFAMILY SSF55781 326 475 1.72E-11 T 26-04-2016 IPR029016 GAF domain-like RGE_RS04025 0c59b0a292be776a10b0e9153d4b1105 720 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 659 692 - T 26-04-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 RGE_RS04025 0c59b0a292be776a10b0e9153d4b1105 720 PRINTS PR00811 Bacterial general secretion pathway protein D signature 555 579 2.1E-22 T 26-04-2016 IPR001775 GspD/PilQ family RGE_RS04025 0c59b0a292be776a10b0e9153d4b1105 720 PRINTS PR00811 Bacterial general secretion pathway protein D signature 701 715 2.1E-22 T 26-04-2016 IPR001775 GspD/PilQ family RGE_RS04025 0c59b0a292be776a10b0e9153d4b1105 720 PRINTS PR00811 Bacterial general secretion pathway protein D signature 455 465 2.1E-22 T 26-04-2016 IPR001775 GspD/PilQ family RGE_RS04025 0c59b0a292be776a10b0e9153d4b1105 720 PRINTS PR00811 Bacterial general secretion pathway protein D signature 678 696 2.1E-22 T 26-04-2016 IPR001775 GspD/PilQ family RGE_RS04025 0c59b0a292be776a10b0e9153d4b1105 720 Pfam PF11741 AMIN domain 51 135 8.3E-12 T 26-04-2016 IPR021731 AMIN domain RGE_RS04025 0c59b0a292be776a10b0e9153d4b1105 720 Pfam PF00263 Bacterial type II and III secretion system protein 559 713 2.4E-49 T 26-04-2016 IPR004846 Type II/III secretion system GO:0009306 RGE_RS04025 0c59b0a292be776a10b0e9153d4b1105 720 PANTHER PTHR30604 160 720 3.6E-112 T 26-04-2016 RGE_RS04025 0c59b0a292be776a10b0e9153d4b1105 720 Pfam PF03958 Bacterial type II/III secretion system short domain 378 455 2.3E-12 T 26-04-2016 IPR005644 NolW-like RGE_RS04025 0c59b0a292be776a10b0e9153d4b1105 720 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 280 713 2.0E-156 T 26-04-2016 IPR013355 Type IV pilus secretin PilQ GO:0009297|GO:0009306 RGE_RS04025 0c59b0a292be776a10b0e9153d4b1105 720 Pfam PF07660 Secretin and TonB N terminus short domain 307 353 4.2E-8 T 26-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RGE_RS04025 0c59b0a292be776a10b0e9153d4b1105 720 SMART SM00965 305 353 1.0E-9 T 26-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RGE_RS12945 a49c71867d5321a0da8404dcd4ad27b9 158 Gene3D G3DSA:1.10.10.10 7 140 1.7E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS12945 a49c71867d5321a0da8404dcd4ad27b9 158 SUPERFAMILY SSF46785 7 140 3.68E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS12945 a49c71867d5321a0da8404dcd4ad27b9 158 Pfam PF01047 MarR family 36 88 2.2E-8 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS12945 a49c71867d5321a0da8404dcd4ad27b9 158 PANTHER PTHR33164 9 150 8.2E-13 T 26-04-2016 RGE_RS12945 a49c71867d5321a0da8404dcd4ad27b9 158 SMART SM00347 25 126 8.2E-6 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 SUPERFAMILY SSF50249 3 125 6.85E-47 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 Gene3D G3DSA:2.30.30.30 119 195 1.5E-32 T 26-04-2016 IPR014722 Ribosomal protein L2 domain 2 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 PANTHER PTHR13691:SF5 1 274 1.8E-133 T 26-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 3.7E-32 T 26-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 Gene3D G3DSA:2.40.50.140 1 113 1.6E-49 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 PIRSF PIRSF002158 7 274 9.1E-96 T 26-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 Gene3D G3DSA:4.10.950.10 196 274 1.3E-32 T 26-04-2016 IPR014726 Ribosomal protein L2, domain 3 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 SMART SM01383 42 118 1.5E-40 T 26-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 SMART SM01382 124 252 1.2E-84 T 26-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 PANTHER PTHR13691 1 274 1.8E-133 T 26-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 26-04-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 8.5E-54 T 26-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 44.455 T 26-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 274 4.4E-123 T 26-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RGE_RS01625 c84f4bfffa6fd43ae3a894f98f94908f 274 SUPERFAMILY SSF50104 127 272 3.85E-57 T 26-04-2016 IPR008991 Translation protein SH3-like domain RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 SMART SM00267 272 444 3.4E-60 T 26-04-2016 IPR000160 GGDEF domain RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 Gene3D G3DSA:3.30.450.20 7 113 5.0E-24 T 26-04-2016 RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 SUPERFAMILY SSF55785 18 122 1.4E-24 T 26-04-2016 IPR000014 PAS domain RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 Pfam PF00990 Diguanylate cyclase, GGDEF domain 283 440 9.2E-48 T 26-04-2016 IPR000160 GGDEF domain RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 Gene3D G3DSA:3.30.70.270 284 446 1.7E-59 T 26-04-2016 RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 SUPERFAMILY SSF55781 119 273 6.98E-16 T 26-04-2016 IPR029016 GAF domain-like RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 Pfam PF13185 GAF domain 140 271 5.0E-9 T 26-04-2016 IPR003018 GAF domain GO:0005515 RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 Pfam PF00989 PAS fold 9 94 6.9E-14 T 26-04-2016 IPR013767 PAS fold GO:0006355 RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 SMART SM00091 7 73 3.2E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 PANTHER PTHR10799:SF774 248 440 7.9E-41 T 26-04-2016 RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 SUPERFAMILY SSF55073 288 445 3.06E-51 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 7 122 3.7E-20 T 26-04-2016 IPR000014 PAS domain RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 Gene3D G3DSA:3.30.450.40 114 283 6.1E-18 T 26-04-2016 IPR029016 GAF domain-like RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 PANTHER PTHR10799 248 440 7.9E-41 T 26-04-2016 RGE_RS14340 04f157a743bc2942ff5d7eb9a2d154ca 452 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 279 443 9.4E-43 T 26-04-2016 IPR000160 GGDEF domain RGE_RS10710 5f529d9a3e289813054ce42369c6c060 354 PANTHER PTHR33055 2 354 1.1E-111 T 26-04-2016 RGE_RS10710 5f529d9a3e289813054ce42369c6c060 354 PANTHER PTHR33055:SF2 2 354 1.1E-111 T 26-04-2016 RGE_RS10710 5f529d9a3e289813054ce42369c6c060 354 Pfam PF01548 Transposase 6 150 2.3E-15 T 26-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RGE_RS10710 5f529d9a3e289813054ce42369c6c060 354 Pfam PF02371 Transposase IS116/IS110/IS902 family 221 292 7.5E-22 T 26-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RGE_RS04655 eb09916c117a0d2ea5e83e251543f666 587 PANTHER PTHR30627 16 571 2.7E-190 T 26-04-2016 RGE_RS04655 eb09916c117a0d2ea5e83e251543f666 587 SUPERFAMILY SSF56519 72 236 7.98E-42 T 26-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RGE_RS04655 eb09916c117a0d2ea5e83e251543f666 587 Pfam PF00905 Penicillin binding protein transpeptidase domain 262 557 8.7E-71 T 26-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RGE_RS04655 eb09916c117a0d2ea5e83e251543f666 587 PANTHER PTHR30627:SF1 16 571 2.7E-190 T 26-04-2016 RGE_RS04655 eb09916c117a0d2ea5e83e251543f666 587 Pfam PF03717 Penicillin-binding Protein dimerisation domain 76 221 1.7E-17 T 26-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RGE_RS04655 eb09916c117a0d2ea5e83e251543f666 587 SUPERFAMILY SSF56601 188 573 2.99E-88 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS04655 eb09916c117a0d2ea5e83e251543f666 587 Gene3D G3DSA:3.40.710.10 244 566 1.6E-85 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS04655 eb09916c117a0d2ea5e83e251543f666 587 Gene3D G3DSA:3.90.1310.10 145 243 2.1E-28 T 26-04-2016 RGE_RS08705 0d2c74766454ec20bfa7463c0cb73dfc 347 SMART SM00354 7 77 5.3E-31 T 26-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RGE_RS08705 0d2c74766454ec20bfa7463c0cb73dfc 347 SUPERFAMILY SSF47413 8 65 8.19E-17 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS08705 0d2c74766454ec20bfa7463c0cb73dfc 347 Gene3D G3DSA:1.10.260.40 9 60 2.0E-24 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS08705 0d2c74766454ec20bfa7463c0cb73dfc 347 Pfam PF13377 Periplasmic binding protein-like domain 174 335 4.5E-41 T 26-04-2016 RGE_RS08705 0d2c74766454ec20bfa7463c0cb73dfc 347 PANTHER PTHR30146 7 338 3.8E-126 T 26-04-2016 RGE_RS08705 0d2c74766454ec20bfa7463c0cb73dfc 347 Gene3D G3DSA:3.40.50.2300 61 178 4.2E-46 T 26-04-2016 RGE_RS08705 0d2c74766454ec20bfa7463c0cb73dfc 347 Gene3D G3DSA:3.40.50.2300 179 315 5.8E-54 T 26-04-2016 RGE_RS08705 0d2c74766454ec20bfa7463c0cb73dfc 347 SUPERFAMILY SSF53822 67 338 5.55E-86 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS08705 0d2c74766454ec20bfa7463c0cb73dfc 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 54 1.1E-18 T 26-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RGE_RS11560 6d95dad84e6d8d7dbd6daa1e28f215be 211 Gene3D G3DSA:1.20.1050.10 89 210 4.1E-48 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS11560 6d95dad84e6d8d7dbd6daa1e28f215be 211 SUPERFAMILY SSF47616 80 209 9.75E-33 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS11560 6d95dad84e6d8d7dbd6daa1e28f215be 211 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 3 209 3.8E-82 T 26-04-2016 IPR005955 Maleylacetoacetate isomerase GO:0003824|GO:0005737|GO:0009072 RGE_RS11560 6d95dad84e6d8d7dbd6daa1e28f215be 211 PANTHER PTHR11260 1 210 5.3E-92 T 26-04-2016 RGE_RS11560 6d95dad84e6d8d7dbd6daa1e28f215be 211 Gene3D G3DSA:3.40.30.10 1 88 1.2E-28 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS11560 6d95dad84e6d8d7dbd6daa1e28f215be 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 80 2.5E-16 T 26-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RGE_RS11560 6d95dad84e6d8d7dbd6daa1e28f215be 211 PANTHER PTHR11260:SF289 1 210 5.3E-92 T 26-04-2016 RGE_RS11560 6d95dad84e6d8d7dbd6daa1e28f215be 211 SUPERFAMILY SSF52833 1 89 1.02E-23 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS09100 51404b2a3371fc792e17c653a3e952ad 207 PANTHER PTHR17490:SF7 3 203 6.0E-79 T 26-04-2016 RGE_RS09100 51404b2a3371fc792e17c653a3e952ad 207 SUPERFAMILY SSF55821 4 203 3.36E-59 T 26-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RGE_RS09100 51404b2a3371fc792e17c653a3e952ad 207 Gene3D G3DSA:3.90.870.10 5 204 3.9E-60 T 26-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RGE_RS09100 51404b2a3371fc792e17c653a3e952ad 207 Pfam PF01300 Telomere recombination 22 198 1.1E-40 T 26-04-2016 IPR006070 YrdC-like domain GO:0003725 RGE_RS09100 51404b2a3371fc792e17c653a3e952ad 207 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 9.5E-57 T 26-04-2016 IPR006070 YrdC-like domain GO:0003725 RGE_RS09100 51404b2a3371fc792e17c653a3e952ad 207 PANTHER PTHR17490 3 203 6.0E-79 T 26-04-2016 RGE_RS00945 560c669bea569b6b74d47a9d9e8d51b1 283 SUPERFAMILY SSF46689 231 280 8.51E-7 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS00945 560c669bea569b6b74d47a9d9e8d51b1 283 SMART SM00342 195 277 6.9E-23 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS00945 560c669bea569b6b74d47a9d9e8d51b1 283 Gene3D G3DSA:1.10.10.60 233 279 5.9E-9 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS00945 560c669bea569b6b74d47a9d9e8d51b1 283 Pfam PF12833 Helix-turn-helix domain 201 279 5.3E-18 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS00945 560c669bea569b6b74d47a9d9e8d51b1 283 PANTHER PTHR11019:SF75 26 283 5.0E-48 T 26-04-2016 RGE_RS00945 560c669bea569b6b74d47a9d9e8d51b1 283 SUPERFAMILY SSF51215 42 161 5.36E-17 T 26-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RGE_RS00945 560c669bea569b6b74d47a9d9e8d51b1 283 PANTHER PTHR11019 26 283 5.0E-48 T 26-04-2016 RGE_RS00945 560c669bea569b6b74d47a9d9e8d51b1 283 Pfam PF02311 AraC-like ligand binding domain 32 158 1.3E-22 T 26-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RGE_RS00945 560c669bea569b6b74d47a9d9e8d51b1 283 Gene3D G3DSA:2.60.120.280 37 166 1.1E-13 T 26-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RGE_RS00945 560c669bea569b6b74d47a9d9e8d51b1 283 SUPERFAMILY SSF46689 179 227 5.14E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS00945 560c669bea569b6b74d47a9d9e8d51b1 283 Gene3D G3DSA:1.10.10.60 178 232 7.5E-17 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS01865 b6a10c9161ca86f375fa780150cdc42d 230 PANTHER PTHR30352 8 174 4.3E-29 T 26-04-2016 RGE_RS01865 b6a10c9161ca86f375fa780150cdc42d 230 Pfam PF04055 Radical SAM superfamily 27 171 7.5E-16 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS01865 b6a10c9161ca86f375fa780150cdc42d 230 SUPERFAMILY SSF102114 21 225 3.66E-26 T 26-04-2016 RGE_RS01865 b6a10c9161ca86f375fa780150cdc42d 230 Pfam PF13353 4Fe-4S single cluster domain 25 86 3.7E-7 T 26-04-2016 RGE_RS01865 b6a10c9161ca86f375fa780150cdc42d 230 Gene3D G3DSA:3.20.20.70 26 223 2.0E-26 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS01865 b6a10c9161ca86f375fa780150cdc42d 230 SMART SM00729 23 226 0.0044 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS01865 b6a10c9161ca86f375fa780150cdc42d 230 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 9 195 4.8E-55 T 26-04-2016 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 14 763 3.0E-219 T 26-04-2016 RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 PANTHER PTHR10169 300 550 3.5E-188 T 26-04-2016 RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 PANTHER PTHR10169 16 276 3.5E-188 T 26-04-2016 RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 SMART SM00434 16 492 3.2E-213 T 26-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 9 767 32.364 T 26-04-2016 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 Gene3D G3DSA:1.10.268.10 393 488 5.8E-28 T 26-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 SUPERFAMILY SSF56719 36 514 2.62E-142 T 26-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 SUPERFAMILY SSF101904 529 759 3.4E-38 T 26-04-2016 RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 Gene3D G3DSA:3.90.199.10 29 287 1.5E-95 T 26-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 PANTHER PTHR10169:SF30 300 550 3.5E-188 T 26-04-2016 RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 PANTHER PTHR10169:SF30 16 276 3.5E-188 T 26-04-2016 RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 37 492 6.5E-124 T 26-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS16930 99ff87d9f9a6da2af09619a125468c0d 771 Gene3D G3DSA:2.120.10.90 526 730 9.5E-23 T 26-04-2016 RGE_RS17125 106896c772f075d06dbf24aeb2dd83cd 165 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 82 160 3.0E-32 T 26-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RGE_RS17125 106896c772f075d06dbf24aeb2dd83cd 165 Gene3D G3DSA:1.10.10.10 80 161 2.4E-34 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17125 106896c772f075d06dbf24aeb2dd83cd 165 SUPERFAMILY SSF46767 80 161 1.03E-30 T 26-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RGE_RS17125 106896c772f075d06dbf24aeb2dd83cd 165 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 81 160 4.1E-34 T 26-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RGE_RS17125 106896c772f075d06dbf24aeb2dd83cd 165 SUPERFAMILY SSF53155 10 85 1.55E-17 T 26-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 RGE_RS17125 106896c772f075d06dbf24aeb2dd83cd 165 PANTHER PTHR10815:SF5 10 160 6.3E-54 T 26-04-2016 RGE_RS17125 106896c772f075d06dbf24aeb2dd83cd 165 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 131 137 - T 26-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 RGE_RS17125 106896c772f075d06dbf24aeb2dd83cd 165 PANTHER PTHR10815 10 160 6.3E-54 T 26-04-2016 RGE_RS03865 ca1b39fea390917107750838d9317c8b 333 SUPERFAMILY SSF52540 73 320 3.18E-29 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03865 ca1b39fea390917107750838d9317c8b 333 Gene3D G3DSA:3.40.50.300 103 265 5.7E-23 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03865 ca1b39fea390917107750838d9317c8b 333 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 107 243 2.0E-13 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS03865 ca1b39fea390917107750838d9317c8b 333 PANTHER PTHR10046 109 243 2.1E-18 T 26-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 RGE_RS03865 ca1b39fea390917107750838d9317c8b 333 PANTHER PTHR10046:SF44 109 243 2.1E-18 T 26-04-2016 RGE_RS03865 ca1b39fea390917107750838d9317c8b 333 SMART SM00382 103 250 9.8E-7 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21490 8cd8b969564a16eca56b40f185b016c0 89 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 26-04-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site RGE_RS21490 8cd8b969564a16eca56b40f185b016c0 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 7.0E-32 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS21490 8cd8b969564a16eca56b40f185b016c0 89 SUPERFAMILY SSF55594 1 87 9.81E-29 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS21490 8cd8b969564a16eca56b40f185b016c0 89 Pfam PF00381 PTS HPr component phosphorylation site 3 81 5.8E-27 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS21490 8cd8b969564a16eca56b40f185b016c0 89 PANTHER PTHR33705:SF2 1 89 1.1E-39 T 26-04-2016 RGE_RS21490 8cd8b969564a16eca56b40f185b016c0 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 26-04-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RGE_RS21490 8cd8b969564a16eca56b40f185b016c0 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.9E-16 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS21490 8cd8b969564a16eca56b40f185b016c0 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.9E-16 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS21490 8cd8b969564a16eca56b40f185b016c0 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.9E-16 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS21490 8cd8b969564a16eca56b40f185b016c0 89 PANTHER PTHR33705 1 89 1.1E-39 T 26-04-2016 RGE_RS21490 8cd8b969564a16eca56b40f185b016c0 89 Gene3D G3DSA:3.30.1340.10 1 87 3.3E-31 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 586 603 - T 26-04-2016 IPR001882 Biotin-binding site RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 Gene3D G3DSA:3.30.1490.20 133 204 1.1E-23 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 Gene3D G3DSA:3.40.50.20 5 132 1.4E-50 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 SMART SM00878 339 444 5.8E-43 T 26-04-2016 IPR005482 Biotin carboxylase, C-terminal RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 SUPERFAMILY SSF52440 3 116 4.53E-48 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 Gene3D G3DSA:2.40.50.100 560 630 6.4E-20 T 26-04-2016 RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 Gene3D G3DSA:3.30.470.20 207 447 2.4E-94 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 Pfam PF00364 Biotin-requiring enzyme 570 629 1.6E-14 T 26-04-2016 IPR000089 Biotin/lipoyl attachment RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 SUPERFAMILY SSF56059 86 350 4.24E-65 T 26-04-2016 RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 SUPERFAMILY SSF51246 334 448 9.94E-34 T 26-04-2016 IPR011054 Rudiment single hybrid motif RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 Pfam PF02785 Biotin carboxylase C-terminal domain 339 444 1.8E-29 T 26-04-2016 IPR005482 Biotin carboxylase, C-terminal RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 325 2.3E-68 T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 PANTHER PTHR18866 3 632 9.3E-281 T 26-04-2016 RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 Pfam PF00289 Biotin carboxylase, N-terminal domain 5 113 8.6E-44 T 26-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 SUPERFAMILY SSF51230 553 630 2.75E-18 T 26-04-2016 IPR011053 Single hybrid motif RGE_RS16020 aaac49a491cdcb2f160a62befc05a34f 633 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 289 296 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS10490 159fc5e5d3fac5e70d24db5642aaca67 695 SUPERFAMILY SSF55486 20 688 3.98E-168 T 26-04-2016 RGE_RS10490 159fc5e5d3fac5e70d24db5642aaca67 695 Gene3D G3DSA:3.40.390.10 368 513 1.9E-47 T 26-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RGE_RS10490 159fc5e5d3fac5e70d24db5642aaca67 695 Gene3D G3DSA:1.20.1050.40 19 152 8.7E-21 T 26-04-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal RGE_RS10490 159fc5e5d3fac5e70d24db5642aaca67 695 PANTHER PTHR11804 11 690 8.7E-294 T 26-04-2016 RGE_RS10490 159fc5e5d3fac5e70d24db5642aaca67 695 Pfam PF01432 Peptidase family M3 235 688 1.9E-116 T 26-04-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 RGE_RS10490 159fc5e5d3fac5e70d24db5642aaca67 695 Gene3D G3DSA:1.10.1370.10 153 358 5.7E-103 T 26-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RGE_RS10490 159fc5e5d3fac5e70d24db5642aaca67 695 Gene3D G3DSA:1.10.1370.10 514 690 5.7E-103 T 26-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RGE_RS10490 159fc5e5d3fac5e70d24db5642aaca67 695 PANTHER PTHR11804:SF47 11 690 8.7E-294 T 26-04-2016 RGE_RS20620 78116e76f2fa4d95d4f14c65bee634a9 385 SUPERFAMILY SSF47240 46 356 9.1E-98 T 26-04-2016 IPR009078 Ferritin-like superfamily RGE_RS20620 78116e76f2fa4d95d4f14c65bee634a9 385 PANTHER PTHR23409:SF18 24 380 9.8E-152 T 26-04-2016 RGE_RS20620 78116e76f2fa4d95d4f14c65bee634a9 385 Pfam PF00268 Ribonucleotide reductase, small chain 65 352 4.9E-82 T 26-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RGE_RS20620 78116e76f2fa4d95d4f14c65bee634a9 385 PIRSF PIRSF000355 35 385 7.4E-133 T 26-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RGE_RS20620 78116e76f2fa4d95d4f14c65bee634a9 385 Gene3D G3DSA:1.10.620.20 43 360 3.9E-112 T 26-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 RGE_RS20620 78116e76f2fa4d95d4f14c65bee634a9 385 PANTHER PTHR23409 24 380 9.8E-152 T 26-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RGE_RS00430 59295564a0c01de4ab34176e1c940c1f 307 Gene3D G3DSA:3.40.190.10 176 272 4.4E-37 T 26-04-2016 RGE_RS00430 59295564a0c01de4ab34176e1c940c1f 307 PANTHER PTHR30346:SF15 1 294 2.5E-99 T 26-04-2016 RGE_RS00430 59295564a0c01de4ab34176e1c940c1f 307 Gene3D G3DSA:1.10.10.10 1 83 4.7E-26 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00430 59295564a0c01de4ab34176e1c940c1f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.5E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00430 59295564a0c01de4ab34176e1c940c1f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.5E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00430 59295564a0c01de4ab34176e1c940c1f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.5E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00430 59295564a0c01de4ab34176e1c940c1f 307 Gene3D G3DSA:3.40.190.10 90 175 1.7E-19 T 26-04-2016 RGE_RS00430 59295564a0c01de4ab34176e1c940c1f 307 SUPERFAMILY SSF53850 88 298 3.62E-41 T 26-04-2016 RGE_RS00430 59295564a0c01de4ab34176e1c940c1f 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.1E-18 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00430 59295564a0c01de4ab34176e1c940c1f 307 PANTHER PTHR30346 1 294 2.5E-99 T 26-04-2016 RGE_RS00430 59295564a0c01de4ab34176e1c940c1f 307 Pfam PF03466 LysR substrate binding domain 88 294 1.4E-46 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS00430 59295564a0c01de4ab34176e1c940c1f 307 SUPERFAMILY SSF46785 1 84 5.45E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22100 126442042e9ff3f6cf32d6122a58576c 316 Pfam PF00586 AIR synthase related protein, N-terminal domain 24 133 2.7E-23 T 26-04-2016 IPR016188 PurM-like, N-terminal domain RGE_RS22100 126442042e9ff3f6cf32d6122a58576c 316 Pfam PF02769 AIR synthase related protein, C-terminal domain 195 297 2.1E-8 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS22100 126442042e9ff3f6cf32d6122a58576c 316 Gene3D G3DSA:3.30.1330.10 1 136 1.5E-43 T 26-04-2016 IPR016188 PurM-like, N-terminal domain RGE_RS22100 126442042e9ff3f6cf32d6122a58576c 316 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 312 29.374 T 26-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 RGE_RS22100 126442042e9ff3f6cf32d6122a58576c 316 SUPERFAMILY SSF56042 138 300 2.24E-34 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS22100 126442042e9ff3f6cf32d6122a58576c 316 PANTHER PTHR30270:SF0 1 315 1.5E-102 T 26-04-2016 RGE_RS22100 126442042e9ff3f6cf32d6122a58576c 316 PANTHER PTHR30270 1 315 1.5E-102 T 26-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 RGE_RS22100 126442042e9ff3f6cf32d6122a58576c 316 PIRSF PIRSF005303 1 315 8.2E-80 T 26-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 RGE_RS22100 126442042e9ff3f6cf32d6122a58576c 316 SUPERFAMILY SSF55326 1 133 1.06E-32 T 26-04-2016 RGE_RS22100 126442042e9ff3f6cf32d6122a58576c 316 Gene3D G3DSA:3.90.650.10 140 315 8.7E-43 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS22100 126442042e9ff3f6cf32d6122a58576c 316 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 2 315 1.4E-96 T 26-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 RGE_RS07640 f2122a33066418679fde04d21044dc34 246 PANTHER PTHR21139 1 246 2.0E-114 T 26-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RGE_RS07640 f2122a33066418679fde04d21044dc34 246 SUPERFAMILY SSF51351 1 244 4.45E-87 T 26-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RGE_RS07640 f2122a33066418679fde04d21044dc34 246 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 235 3.2E-62 T 26-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RGE_RS07640 f2122a33066418679fde04d21044dc34 246 Pfam PF00121 Triosephosphate isomerase 4 242 2.0E-87 T 26-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RGE_RS07640 f2122a33066418679fde04d21044dc34 246 ProSitePatterns PS00171 Triosephosphate isomerase active site. 162 172 - T 26-04-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RGE_RS07640 f2122a33066418679fde04d21044dc34 246 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 245 39.535 T 26-04-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RGE_RS07640 f2122a33066418679fde04d21044dc34 246 Gene3D G3DSA:3.20.20.70 1 245 1.0E-99 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS03955 a524bb2a467c681a4e60578bfcc47b07 513 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 52 65 - T 26-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RGE_RS03955 a524bb2a467c681a4e60578bfcc47b07 513 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 15 512 1.5E-251 T 26-04-2016 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 RGE_RS03955 a524bb2a467c681a4e60578bfcc47b07 513 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 418 2.0E-27 T 26-04-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 RGE_RS03955 a524bb2a467c681a4e60578bfcc47b07 513 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 428 512 5.2E-24 T 26-04-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 RGE_RS03955 a524bb2a467c681a4e60578bfcc47b07 513 PANTHER PTHR10314 15 368 4.6E-207 T 26-04-2016 RGE_RS03955 a524bb2a467c681a4e60578bfcc47b07 513 Gene3D G3DSA:3.40.1020.10 339 512 5.4E-59 T 26-04-2016 RGE_RS03955 a524bb2a467c681a4e60578bfcc47b07 513 SUPERFAMILY SSF53686 14 365 1.07E-104 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS03955 a524bb2a467c681a4e60578bfcc47b07 513 PANTHER PTHR10314:SF30 15 368 4.6E-207 T 26-04-2016 RGE_RS03955 a524bb2a467c681a4e60578bfcc47b07 513 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 30 316 1.3E-77 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS03955 a524bb2a467c681a4e60578bfcc47b07 513 SUPERFAMILY SSF55021 419 512 4.35E-27 T 26-04-2016 RGE_RS03955 a524bb2a467c681a4e60578bfcc47b07 513 Gene3D G3DSA:3.40.50.1100 79 335 1.2E-82 T 26-04-2016 RGE_RS18770 1039f0a3d36da9f547476bdfee78ca4c 383 PANTHER PTHR11496 1 383 1.6E-218 T 26-04-2016 RGE_RS18770 1039f0a3d36da9f547476bdfee78ca4c 383 PANTHER PTHR11496:SF78 1 383 1.6E-218 T 26-04-2016 RGE_RS18770 1039f0a3d36da9f547476bdfee78ca4c 383 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 26-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RGE_RS18770 1039f0a3d36da9f547476bdfee78ca4c 383 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 375 1.1E-124 T 26-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 RGE_RS18770 1039f0a3d36da9f547476bdfee78ca4c 383 SUPERFAMILY SSF56796 4 382 8.77E-132 T 26-04-2016 RGE_RS18770 1039f0a3d36da9f547476bdfee78ca4c 383 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 260 280 - T 26-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RGE_RS18770 1039f0a3d36da9f547476bdfee78ca4c 383 Gene3D G3DSA:1.20.1090.10 185 383 1.2E-75 T 26-04-2016 RGE_RS18770 1039f0a3d36da9f547476bdfee78ca4c 383 Gene3D G3DSA:3.40.50.1970 3 184 5.2E-61 T 26-04-2016 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 PIRSF PIRSF000110 1 481 1.1E-161 T 26-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 137 150 1.8E-43 T 26-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 161 189 1.8E-43 T 26-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 322 348 1.8E-43 T 26-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 213 230 1.8E-43 T 26-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 231 247 1.8E-43 T 26-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 6 181 9.1E-52 T 26-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 183 477 7.4E-111 T 26-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 Gene3D G3DSA:3.40.50.720 3 180 6.4E-53 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 SUPERFAMILY SSF51735 3 184 9.84E-52 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 Gene3D G3DSA:3.30.360.10 181 478 8.3E-117 T 26-04-2016 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 PANTHER PTHR23429:SF0 5 481 3.2E-191 T 26-04-2016 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 PANTHER PTHR23429 5 481 3.2E-191 T 26-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 2 479 76.229 T 26-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 SUPERFAMILY SSF55347 171 478 1.11E-109 T 26-04-2016 RGE_RS04100 53cbeae3af24f6c14e739f50d2e5999c 481 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 3 479 7.7E-166 T 26-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RGE_RS03055 563aba27ae46d1b733eaf8d8beba8c64 212 Gene3D G3DSA:3.40.50.150 16 197 1.9E-29 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS03055 563aba27ae46d1b733eaf8d8beba8c64 212 SUPERFAMILY SSF53335 12 188 7.8E-34 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS03055 563aba27ae46d1b733eaf8d8beba8c64 212 PANTHER PTHR10108 16 181 1.4E-36 T 26-04-2016 RGE_RS03055 563aba27ae46d1b733eaf8d8beba8c64 212 PANTHER PTHR10108:SF838 16 181 1.4E-36 T 26-04-2016 RGE_RS03055 563aba27ae46d1b733eaf8d8beba8c64 212 Pfam PF13649 Methyltransferase domain 49 141 1.4E-15 T 26-04-2016 RGE_RS03835 3a1ff250a51278cf50cbc5053a72744f 225 PANTHER PTHR24220:SF578 6 217 6.2E-69 T 26-04-2016 RGE_RS03835 3a1ff250a51278cf50cbc5053a72744f 225 PANTHER PTHR24220 6 217 6.2E-69 T 26-04-2016 RGE_RS03835 3a1ff250a51278cf50cbc5053a72744f 225 SUPERFAMILY SSF52540 3 217 7.78E-48 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03835 3a1ff250a51278cf50cbc5053a72744f 225 Pfam PF00005 ABC transporter 27 173 2.7E-25 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS03835 3a1ff250a51278cf50cbc5053a72744f 225 Gene3D G3DSA:3.40.50.300 3 217 9.3E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03835 3a1ff250a51278cf50cbc5053a72744f 225 SMART SM00382 31 221 2.1E-14 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS05485 7cc08f345d5bf9d30294ac17ece226a7 533 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 279 474 1.2E-28 T 26-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RGE_RS05485 7cc08f345d5bf9d30294ac17ece226a7 533 SUPERFAMILY SSF53067 270 522 2.59E-53 T 26-04-2016 RGE_RS05485 7cc08f345d5bf9d30294ac17ece226a7 533 PIRSF PIRSF000538 8 527 5.3E-94 T 26-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RGE_RS05485 7cc08f345d5bf9d30294ac17ece226a7 533 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 14 21 - T 26-04-2016 IPR018181 Heat shock protein 70, conserved site RGE_RS05485 7cc08f345d5bf9d30294ac17ece226a7 533 PANTHER PTHR10196:SF67 6 530 2.6E-101 T 26-04-2016 RGE_RS05485 7cc08f345d5bf9d30294ac17ece226a7 533 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 11 268 7.0E-40 T 26-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RGE_RS05485 7cc08f345d5bf9d30294ac17ece226a7 533 Gene3D G3DSA:3.30.420.40 270 522 2.1E-48 T 26-04-2016 RGE_RS05485 7cc08f345d5bf9d30294ac17ece226a7 533 Gene3D G3DSA:3.30.420.40 8 269 5.7E-47 T 26-04-2016 RGE_RS05485 7cc08f345d5bf9d30294ac17ece226a7 533 SUPERFAMILY SSF53067 11 270 4.85E-46 T 26-04-2016 RGE_RS05485 7cc08f345d5bf9d30294ac17ece226a7 533 PANTHER PTHR10196 6 530 2.6E-101 T 26-04-2016 RGE_RS11240 1fe526deba9ffb6d3db7dbedecdf8943 231 SUPERFAMILY SSF52172 1 125 1.39E-37 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11240 1fe526deba9ffb6d3db7dbedecdf8943 231 SUPERFAMILY SSF46894 127 223 1.81E-18 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS11240 1fe526deba9ffb6d3db7dbedecdf8943 231 PANTHER PTHR26402:SF552 2 225 2.7E-76 T 26-04-2016 RGE_RS11240 1fe526deba9ffb6d3db7dbedecdf8943 231 SMART SM00862 148 222 1.3E-16 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS11240 1fe526deba9ffb6d3db7dbedecdf8943 231 PANTHER PTHR26402 2 225 2.7E-76 T 26-04-2016 RGE_RS11240 1fe526deba9ffb6d3db7dbedecdf8943 231 SMART SM00448 2 114 2.0E-38 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11240 1fe526deba9ffb6d3db7dbedecdf8943 231 Gene3D G3DSA:3.40.50.2300 2 124 4.4E-37 T 26-04-2016 RGE_RS11240 1fe526deba9ffb6d3db7dbedecdf8943 231 Pfam PF00072 Response regulator receiver domain 5 114 7.1E-25 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11240 1fe526deba9ffb6d3db7dbedecdf8943 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 222 2.1E-15 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS11240 1fe526deba9ffb6d3db7dbedecdf8943 231 Gene3D G3DSA:1.10.10.10 127 224 1.3E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14225 24a1aca66a403e2f0a16c313d1188b4b 234 SMART SM00419 176 224 5.0E-4 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS14225 24a1aca66a403e2f0a16c313d1188b4b 234 SUPERFAMILY SSF46785 156 232 6.7E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14225 24a1aca66a403e2f0a16c313d1188b4b 234 PANTHER PTHR24567 9 234 2.6E-41 T 26-04-2016 RGE_RS14225 24a1aca66a403e2f0a16c313d1188b4b 234 Pfam PF00027 Cyclic nucleotide-binding domain 38 125 3.2E-15 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS14225 24a1aca66a403e2f0a16c313d1188b4b 234 Pfam PF13545 Crp-like helix-turn-helix domain 157 231 2.6E-14 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS14225 24a1aca66a403e2f0a16c313d1188b4b 234 PANTHER PTHR24567:SF30 9 234 2.6E-41 T 26-04-2016 RGE_RS14225 24a1aca66a403e2f0a16c313d1188b4b 234 Gene3D G3DSA:2.60.120.10 18 149 2.6E-24 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS14225 24a1aca66a403e2f0a16c313d1188b4b 234 SUPERFAMILY SSF51206 14 150 1.7E-28 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS14225 24a1aca66a403e2f0a16c313d1188b4b 234 SMART SM00100 19 137 2.1E-13 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS14225 24a1aca66a403e2f0a16c313d1188b4b 234 Gene3D G3DSA:1.10.10.10 155 233 3.1E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS21345 090223911328641dde6110de708adf8c 104 Gene3D G3DSA:2.30.30.110 2 104 2.1E-22 T 26-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RGE_RS21345 090223911328641dde6110de708adf8c 104 Pfam PF01845 CcdB protein 3 103 7.8E-26 T 26-04-2016 IPR002712 Toxin CcdB GO:0006276|GO:0008657 RGE_RS21345 090223911328641dde6110de708adf8c 104 SUPERFAMILY SSF50118 2 103 1.9E-19 T 26-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RGE_RS12215 017232561240153b4eb57ca0441f68e4 151 Gene3D G3DSA:1.20.1260.10 1 115 7.3E-7 T 26-04-2016 IPR012347 Ferritin-related RGE_RS12215 017232561240153b4eb57ca0441f68e4 151 Pfam PF09537 Domain of unknown function (DUF2383) 5 114 1.7E-39 T 26-04-2016 IPR019052 Domain of unknown function DUF2383 RGE_RS12215 017232561240153b4eb57ca0441f68e4 151 SUPERFAMILY SSF47240 1 114 6.02E-6 T 26-04-2016 IPR009078 Ferritin-like superfamily RGE_RS12215 017232561240153b4eb57ca0441f68e4 151 PIRSF PIRSF029477 1 149 3.4E-53 T 26-04-2016 IPR016920 Uncharacterised conserved protein UCP029477 RGE_RS12215 017232561240153b4eb57ca0441f68e4 151 TIGRFAM TIGR02284 TIGR02284: conserved hypothetical protein 7 143 3.3E-44 T 26-04-2016 IPR011971 Conserved hypothetical protein CHP02284 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SMART SM00091 577 643 3.1E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SMART SM00091 446 512 2.0E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SMART SM00091 702 771 0.021 T 26-04-2016 IPR000014 PAS domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SMART SM00091 316 384 0.15 T 26-04-2016 IPR000014 PAS domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Gene3D G3DSA:3.30.450.20 441 562 1.1E-21 T 26-04-2016 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SMART SM00388 840 906 2.9E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SMART SM00448 1094 1207 1.7E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Gene3D G3DSA:3.30.450.20 687 820 3.2E-21 T 26-04-2016 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Gene3D G3DSA:3.30.450.20 563 686 8.5E-21 T 26-04-2016 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SUPERFAMILY SSF55785 430 559 3.32E-20 T 26-04-2016 IPR000014 PAS domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Gene3D G3DSA:3.40.50.2300 1093 1213 2.1E-28 T 26-04-2016 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 PANTHER PTHR24423 303 520 1.6E-132 T 26-04-2016 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 PANTHER PTHR24423 780 1196 1.6E-132 T 26-04-2016 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SUPERFAMILY SSF52172 1092 1212 3.56E-29 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Pfam PF08447 PAS fold 341 427 1.2E-20 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SUPERFAMILY SSF55785 561 683 3.14E-22 T 26-04-2016 IPR000014 PAS domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Pfam PF00512 His Kinase A (phospho-acceptor) domain 842 906 5.4E-7 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SUPERFAMILY SSF55785 687 820 1.29E-20 T 26-04-2016 IPR000014 PAS domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SMART SM00387 947 1071 9.4E-32 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SUPERFAMILY SSF55785 325 434 3.14E-18 T 26-04-2016 IPR000014 PAS domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Gene3D G3DSA:3.30.565.10 914 1069 3.3E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SUPERFAMILY SSF55874 896 1069 3.8E-39 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Gene3D G3DSA:1.10.287.130 836 902 7.5E-4 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Pfam PF08448 PAS fold 708 824 4.2E-11 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Pfam PF08448 PAS fold 584 692 5.6E-19 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Pfam PF08448 PAS fold 452 566 1.6E-14 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SMART SM00086 523 565 0.0025 T 26-04-2016 IPR001610 PAC motif RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SMART SM00086 780 822 2.4E-4 T 26-04-2016 IPR001610 PAC motif RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SMART SM00086 648 690 200.0 T 26-04-2016 IPR001610 PAC motif RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SMART SM00086 391 434 2.1E-7 T 26-04-2016 IPR001610 PAC motif RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 443 572 2.1E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 573 697 9.0E-11 T 26-04-2016 IPR000014 PAS domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 341 441 1.1E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 698 827 3.9E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Gene3D G3DSA:3.30.450.20 304 440 3.4E-30 T 26-04-2016 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 SUPERFAMILY SSF47384 832 906 7.06E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 948 1069 3.9E-20 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1000 1014 5.2E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1031 1049 5.2E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1055 1068 5.2E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1018 1028 5.2E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS16525 22343897461459688f51fcddacfb04b8 1217 Pfam PF00072 Response regulator receiver domain 1096 1204 3.1E-20 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Pfam PF00512 His Kinase A (phospho-acceptor) domain 464 528 8.7E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 65 186 1.3E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 337 448 1.2E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SUPERFAMILY SSF52172 706 829 4.13E-21 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SMART SM00091 68 136 1.0E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SMART SM00091 186 251 2.2 T 26-04-2016 IPR000014 PAS domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SMART SM00091 340 408 0.76 T 26-04-2016 IPR000014 PAS domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Pfam PF13188 PAS domain 186 241 7.5E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Pfam PF13188 PAS domain 340 380 7.7E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SUPERFAMILY SSF55785 58 179 1.34E-20 T 26-04-2016 IPR000014 PAS domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Gene3D G3DSA:3.30.450.20 60 180 3.4E-21 T 26-04-2016 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SUPERFAMILY SSF55785 330 441 1.74E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 575 690 6.1E-28 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SUPERFAMILY SSF55785 206 310 1.45E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 PANTHER PTHR24423:SF486 52 196 1.8E-188 T 26-04-2016 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 PANTHER PTHR24423:SF486 753 969 1.8E-188 T 26-04-2016 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 PANTHER PTHR24423:SF486 338 694 1.8E-188 T 26-04-2016 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 PRINTS PR00344 Bacterial sensor protein C-terminal signature 616 630 6.4E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 PRINTS PR00344 Bacterial sensor protein C-terminal signature 675 688 6.4E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 PRINTS PR00344 Bacterial sensor protein C-terminal signature 651 669 6.4E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 PRINTS PR00344 Bacterial sensor protein C-terminal signature 634 644 6.4E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SMART SM00086 139 181 65.0 T 26-04-2016 IPR001610 PAC motif RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SMART SM00086 402 443 3.5 T 26-04-2016 IPR001610 PAC motif RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SMART SM00086 263 303 0.058 T 26-04-2016 IPR001610 PAC motif RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SMART SM00388 463 528 2.2E-24 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Gene3D G3DSA:3.30.450.20 333 441 2.5E-12 T 26-04-2016 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SMART SM00387 575 691 2.1E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Pfam PF00072 Response regulator receiver domain 710 824 3.5E-14 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Pfam PF00072 Response regulator receiver domain 852 962 7.7E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SUPERFAMILY SSF55874 517 690 6.94E-47 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SUPERFAMILY SSF47226 991 1092 3.93E-18 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SUPERFAMILY SSF47226 945 958 3.93E-18 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Gene3D G3DSA:1.10.287.130 458 524 5.2E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Gene3D G3DSA:3.40.50.2300 708 830 2.4E-22 T 26-04-2016 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Gene3D G3DSA:3.30.565.10 529 695 8.5E-47 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Gene3D G3DSA:3.40.50.2300 847 969 2.0E-42 T 26-04-2016 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SMART SM00448 707 824 1.8E-14 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SMART SM00448 849 962 1.8E-35 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SUPERFAMILY SSF47384 451 529 1.55E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 SUPERFAMILY SSF52172 847 968 6.97E-39 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 PANTHER PTHR24423 52 196 1.8E-188 T 26-04-2016 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 PANTHER PTHR24423 753 969 1.8E-188 T 26-04-2016 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 PANTHER PTHR24423 338 694 1.8E-188 T 26-04-2016 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Pfam PF01627 Hpt domain 1012 1098 1.2E-11 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Pfam PF08448 PAS fold 77 183 2.5E-17 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Gene3D G3DSA:1.20.120.160 985 1098 7.4E-18 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS23210 820b3680574bd004fe82ca2b6b6b9fc2 1104 Gene3D G3DSA:3.30.450.20 181 301 7.8E-10 T 26-04-2016 RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 Gene3D G3DSA:3.30.1490.20 130 203 8.2E-29 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 PANTHER PTHR18866 1 441 3.5E-289 T 26-04-2016 RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 Gene3D G3DSA:3.40.50.20 2 129 6.2E-53 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 Gene3D G3DSA:3.30.470.20 204 441 5.5E-99 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 4.6E-39 T 26-04-2016 IPR005482 Biotin carboxylase, C-terminal RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 SUPERFAMILY SSF52440 1 113 6.91E-50 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 SMART SM00878 336 441 1.0E-65 T 26-04-2016 IPR005482 Biotin carboxylase, C-terminal RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 SUPERFAMILY SSF51246 331 444 6.28E-43 T 26-04-2016 IPR011054 Rudiment single hybrid motif RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 2 443 1.1E-220 T 26-04-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 110 2.4E-46 T 26-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 SUPERFAMILY SSF56059 83 346 8.42E-71 T 26-04-2016 RGE_RS20595 9ff893b4b2f7fb7d0ce3433bdfdfb132 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 2.4E-79 T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS20790 ead89aea24303354ed83dd3b830f1ed3 316 PANTHER PTHR30487 86 316 1.1E-88 T 26-04-2016 RGE_RS20790 ead89aea24303354ed83dd3b830f1ed3 316 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 242 253 4.4E-25 T 26-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RGE_RS20790 ead89aea24303354ed83dd3b830f1ed3 316 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 254 269 4.4E-25 T 26-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RGE_RS20790 ead89aea24303354ed83dd3b830f1ed3 316 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 231 241 4.4E-25 T 26-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RGE_RS20790 ead89aea24303354ed83dd3b830f1ed3 316 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 172 189 4.4E-25 T 26-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RGE_RS20790 ead89aea24303354ed83dd3b830f1ed3 316 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 23 152 6.3E-35 T 26-04-2016 IPR010627 Peptidase A24A, N-terminal KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RGE_RS20790 ead89aea24303354ed83dd3b830f1ed3 316 PANTHER PTHR30487:SF0 20 41 1.1E-88 T 26-04-2016 RGE_RS20790 ead89aea24303354ed83dd3b830f1ed3 316 PANTHER PTHR30487:SF0 86 316 1.1E-88 T 26-04-2016 RGE_RS20790 ead89aea24303354ed83dd3b830f1ed3 316 Pfam PF01478 Type IV leader peptidase family 166 274 1.0E-23 T 26-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 RGE_RS20790 ead89aea24303354ed83dd3b830f1ed3 316 PANTHER PTHR30487 20 41 1.1E-88 T 26-04-2016 RGE_RS10160 d3d58b92cf6133a148b5f60741c2dbd0 389 Gene3D G3DSA:3.40.190.10 232 269 9.5E-17 T 26-04-2016 RGE_RS10160 d3d58b92cf6133a148b5f60741c2dbd0 389 Gene3D G3DSA:3.40.190.10 5 91 9.5E-17 T 26-04-2016 RGE_RS10160 d3d58b92cf6133a148b5f60741c2dbd0 389 Pfam PF13343 Bacterial extracellular solute-binding protein 39 258 1.1E-21 T 26-04-2016 RGE_RS10160 d3d58b92cf6133a148b5f60741c2dbd0 389 SUPERFAMILY SSF53850 5 276 2.87E-40 T 26-04-2016 RGE_RS10160 d3d58b92cf6133a148b5f60741c2dbd0 389 PANTHER PTHR30006 6 312 1.8E-35 T 26-04-2016 RGE_RS10160 d3d58b92cf6133a148b5f60741c2dbd0 389 Gene3D G3DSA:3.40.190.10 98 231 1.9E-20 T 26-04-2016 RGE_RS10995 4f3888c3a6af5d7bd32a7aa6d4fbe87b 848 PANTHER PTHR11558:SF4 492 726 1.5E-19 T 26-04-2016 RGE_RS10995 4f3888c3a6af5d7bd32a7aa6d4fbe87b 848 PANTHER PTHR11558 492 726 1.5E-19 T 26-04-2016 RGE_RS10995 4f3888c3a6af5d7bd32a7aa6d4fbe87b 848 Gene3D G3DSA:3.40.50.150 491 716 5.4E-32 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS10995 4f3888c3a6af5d7bd32a7aa6d4fbe87b 848 SUPERFAMILY SSF53335 444 650 4.23E-32 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 26-04-2016 IPR031157 Tr-type G domain, conserved site RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 6.6E-17 T 26-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.106 T 26-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.58E-25 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.58E-25 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.58E-25 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 7.58E-25 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.58E-25 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 2.3E-228 T 26-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 2.2E-34 T 26-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 Gene3D G3DSA:3.40.50.300 5 213 7.1E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 PANTHER PTHR23115 1 395 1.8E-260 T 26-04-2016 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 150 3.4E-15 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 SUPERFAMILY SSF50447 207 303 3.73E-30 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 Gene3D G3DSA:2.40.30.10 214 300 1.7E-36 T 26-04-2016 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 SUPERFAMILY SSF52540 5 221 7.0E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 Gene3D G3DSA:2.40.30.10 302 395 3.5E-47 T 26-04-2016 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 PANTHER PTHR23115:SF151 1 395 1.8E-260 T 26-04-2016 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.6E-58 T 26-04-2016 RGE_RS01530 e0d31c54bb64947bcf5827e1acdc39f7 396 SUPERFAMILY SSF50465 304 396 6.96E-37 T 26-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 26-04-2016 IPR031157 Tr-type G domain, conserved site RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 6.6E-17 T 26-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.106 T 26-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.58E-25 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.58E-25 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.58E-25 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 7.58E-25 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.58E-25 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 2.3E-228 T 26-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 2.2E-34 T 26-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 Gene3D G3DSA:3.40.50.300 5 213 7.1E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 PANTHER PTHR23115 1 395 1.8E-260 T 26-04-2016 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 150 3.4E-15 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 SUPERFAMILY SSF50447 207 303 3.73E-30 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 Gene3D G3DSA:2.40.30.10 214 300 1.7E-36 T 26-04-2016 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 SUPERFAMILY SSF52540 5 221 7.0E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 Gene3D G3DSA:2.40.30.10 302 395 3.5E-47 T 26-04-2016 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 PANTHER PTHR23115:SF151 1 395 1.8E-260 T 26-04-2016 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.6E-58 T 26-04-2016 RGE_RS01600 e0d31c54bb64947bcf5827e1acdc39f7 396 SUPERFAMILY SSF50465 304 396 6.96E-37 T 26-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RGE_RS02120 10349b399035cf968202d99b5266318f 316 Gene3D G3DSA:3.90.550.10 14 228 3.3E-31 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS02120 10349b399035cf968202d99b5266318f 316 SUPERFAMILY SSF53448 10 243 8.81E-38 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS02120 10349b399035cf968202d99b5266318f 316 PANTHER PTHR22916 15 224 1.0E-29 T 26-04-2016 RGE_RS02120 10349b399035cf968202d99b5266318f 316 Pfam PF00535 Glycosyl transferase family 2 14 178 7.2E-22 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS02010 67122377db5a031fd9efb2ea0f717378 315 PANTHER PTHR32309 102 296 6.6E-44 T 26-04-2016 RGE_RS02010 67122377db5a031fd9efb2ea0f717378 315 TIGRFAM TIGR03018 pepcterm_TyrKin: exopolysaccharide/PEP-CTERM locus tyrosine autokinase 63 270 8.9E-84 T 26-04-2016 RGE_RS02010 67122377db5a031fd9efb2ea0f717378 315 Pfam PF13614 AAA domain 102 261 1.5E-9 T 26-04-2016 IPR025669 AAA domain RGE_RS02010 67122377db5a031fd9efb2ea0f717378 315 Gene3D G3DSA:3.40.50.300 98 276 5.7E-30 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02010 67122377db5a031fd9efb2ea0f717378 315 SUPERFAMILY SSF52540 100 276 4.62E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02010 67122377db5a031fd9efb2ea0f717378 315 PANTHER PTHR32309:SF13 102 296 6.6E-44 T 26-04-2016 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 Pfam PF02119 Flagellar P-ring protein 23 365 1.7E-125 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 Hamap MF_00416 Flagellar P-ring protein [flgI]. 2 366 34.574 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 PANTHER PTHR30381:SF1 18 366 3.7E-168 T 26-04-2016 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 PANTHER PTHR30381 18 366 3.7E-168 T 26-04-2016 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 PRINTS PR01010 Flagellar P-ring protein signature 37 52 1.5E-71 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 PRINTS PR01010 Flagellar P-ring protein signature 162 180 1.5E-71 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 PRINTS PR01010 Flagellar P-ring protein signature 82 101 1.5E-71 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 PRINTS PR01010 Flagellar P-ring protein signature 251 263 1.5E-71 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 PRINTS PR01010 Flagellar P-ring protein signature 22 37 1.5E-71 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 PRINTS PR01010 Flagellar P-ring protein signature 56 71 1.5E-71 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 PRINTS PR01010 Flagellar P-ring protein signature 121 139 1.5E-71 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 PRINTS PR01010 Flagellar P-ring protein signature 188 206 1.5E-71 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS09685 fd9a1048b0dcaefb9e2e132fe7e727f2 366 PRINTS PR01010 Flagellar P-ring protein signature 104 121 1.5E-71 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS18080 ecaa7a8aae9a6a122115b39c1f1adf60 528 PIRSF PIRSF036654 2 528 6.6E-135 T 26-04-2016 IPR014614 Uncharacterised conserved protein UCP036654 GO:0016627|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.-|UniPathway: UPA00062 RGE_RS18080 ecaa7a8aae9a6a122115b39c1f1adf60 528 Gene3D G3DSA:3.50.50.60 464 526 2.2E-52 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18080 ecaa7a8aae9a6a122115b39c1f1adf60 528 Gene3D G3DSA:3.50.50.60 7 252 2.2E-52 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18080 ecaa7a8aae9a6a122115b39c1f1adf60 528 SUPERFAMILY SSF51905 467 509 1.09E-32 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18080 ecaa7a8aae9a6a122115b39c1f1adf60 528 SUPERFAMILY SSF51905 6 270 1.09E-32 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18080 ecaa7a8aae9a6a122115b39c1f1adf60 528 PANTHER PTHR11632 7 375 2.5E-88 T 26-04-2016 RGE_RS18080 ecaa7a8aae9a6a122115b39c1f1adf60 528 PANTHER PTHR11632 449 524 2.5E-88 T 26-04-2016 RGE_RS18080 ecaa7a8aae9a6a122115b39c1f1adf60 528 Pfam PF00890 FAD binding domain 7 503 3.8E-56 T 26-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RGE_RS18080 ecaa7a8aae9a6a122115b39c1f1adf60 528 PRINTS PR00419 Adrenodoxin reductase family signature 5 27 1.0E-5 T 26-04-2016 RGE_RS18080 ecaa7a8aae9a6a122115b39c1f1adf60 528 PRINTS PR00419 Adrenodoxin reductase family signature 28 41 1.0E-5 T 26-04-2016 RGE_RS18080 ecaa7a8aae9a6a122115b39c1f1adf60 528 PANTHER PTHR11632:SF38 7 375 2.5E-88 T 26-04-2016 RGE_RS18080 ecaa7a8aae9a6a122115b39c1f1adf60 528 PANTHER PTHR11632:SF38 449 524 2.5E-88 T 26-04-2016 RGE_RS01750 83a23d987963b8b005050eb663567644 131 Pfam PF01196 Ribosomal protein L17 20 116 1.8E-35 T 26-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01750 83a23d987963b8b005050eb663567644 131 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 4.5E-46 T 26-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01750 83a23d987963b8b005050eb663567644 131 Gene3D G3DSA:3.90.1030.10 1 117 3.1E-51 T 26-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01750 83a23d987963b8b005050eb663567644 131 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 26-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01750 83a23d987963b8b005050eb663567644 131 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 27.204 T 26-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01750 83a23d987963b8b005050eb663567644 131 PANTHER PTHR14413 1 128 5.7E-64 T 26-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01750 83a23d987963b8b005050eb663567644 131 SUPERFAMILY SSF64263 1 119 1.83E-51 T 26-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS17945 fc8bee291ebf25898c921615259a4587 299 Gene3D G3DSA:3.40.190.10 26 106 3.0E-21 T 26-04-2016 RGE_RS17945 fc8bee291ebf25898c921615259a4587 299 Gene3D G3DSA:3.40.190.10 208 245 3.0E-21 T 26-04-2016 RGE_RS17945 fc8bee291ebf25898c921615259a4587 299 Gene3D G3DSA:3.40.190.10 107 195 8.5E-12 T 26-04-2016 RGE_RS17945 fc8bee291ebf25898c921615259a4587 299 SUPERFAMILY SSF53850 22 247 3.4E-44 T 26-04-2016 RGE_RS17945 fc8bee291ebf25898c921615259a4587 299 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 245 3.8E-32 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS17945 fc8bee291ebf25898c921615259a4587 299 SMART SM00062 29 248 1.1E-31 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS22380 ce63525081b3056a070f934e89c2b92c 273 PANTHER PTHR19278 1 227 1.0E-60 T 26-04-2016 RGE_RS22380 ce63525081b3056a070f934e89c2b92c 273 PANTHER PTHR19278:SF1 1 227 1.0E-60 T 26-04-2016 RGE_RS22380 ce63525081b3056a070f934e89c2b92c 273 Gene3D G3DSA:3.20.20.70 6 267 1.4E-67 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS22380 ce63525081b3056a070f934e89c2b92c 273 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 17 248 1.1E-31 T 26-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS22380 ce63525081b3056a070f934e89c2b92c 273 Hamap MF_01215 Orotidine 5'-phosphate decarboxylase [pyrF]. 3 269 36.098 T 26-04-2016 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS22380 ce63525081b3056a070f934e89c2b92c 273 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 91 104 - T 26-04-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS22380 ce63525081b3056a070f934e89c2b92c 273 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 4 256 3.6E-73 T 26-04-2016 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS22380 ce63525081b3056a070f934e89c2b92c 273 SUPERFAMILY SSF51366 4 265 8.48E-73 T 26-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RGE_RS22380 ce63525081b3056a070f934e89c2b92c 273 SMART SM00934 18 256 2.3E-45 T 26-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS08855 588cc59eed1f7c9eb2cff52be385093b 281 PANTHER PTHR35369:SF1 42 203 9.2E-18 T 26-04-2016 RGE_RS08855 588cc59eed1f7c9eb2cff52be385093b 281 SUPERFAMILY SSF52540 77 190 8.82E-28 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08855 588cc59eed1f7c9eb2cff52be385093b 281 PANTHER PTHR35369 42 203 9.2E-18 T 26-04-2016 RGE_RS08855 588cc59eed1f7c9eb2cff52be385093b 281 Gene3D G3DSA:3.40.50.300 77 190 4.1E-32 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02370 94fb5decc4a5bf247e60e931d26955ed 457 PANTHER PTHR22572 4 448 5.6E-194 T 26-04-2016 RGE_RS02370 94fb5decc4a5bf247e60e931d26955ed 457 Gene3D G3DSA:2.160.10.10 263 436 9.3E-50 T 26-04-2016 RGE_RS02370 94fb5decc4a5bf247e60e931d26955ed 457 SUPERFAMILY SSF51161 254 437 2.71E-50 T 26-04-2016 IPR011004 Trimeric LpxA-like RGE_RS02370 94fb5decc4a5bf247e60e931d26955ed 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 394 428 6.0E-10 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS02370 94fb5decc4a5bf247e60e931d26955ed 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 298 5.8E-6 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS02370 94fb5decc4a5bf247e60e931d26955ed 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 316 350 7.9E-7 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS02370 94fb5decc4a5bf247e60e931d26955ed 457 Gene3D G3DSA:3.90.550.10 2 248 1.6E-65 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS02370 94fb5decc4a5bf247e60e931d26955ed 457 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 453 8.4E-180 T 26-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 RGE_RS02370 94fb5decc4a5bf247e60e931d26955ed 457 Pfam PF12804 MobA-like NTP transferase domain 5 126 1.6E-19 T 26-04-2016 IPR025877 MobA-like NTP transferase RGE_RS02370 94fb5decc4a5bf247e60e931d26955ed 457 SUPERFAMILY SSF53448 2 251 1.67E-59 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS02370 94fb5decc4a5bf247e60e931d26955ed 457 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 451 40.605 T 26-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 RGE_RS02370 94fb5decc4a5bf247e60e931d26955ed 457 PANTHER PTHR22572:SF115 4 448 5.6E-194 T 26-04-2016 RGE_RS02880 5b0469ddd3fabfc4952e6bcdcba6b7fe 232 Pfam PF04172 LrgB-like family 17 228 2.0E-67 T 26-04-2016 IPR007300 CidB/LrgB family RGE_RS02880 5b0469ddd3fabfc4952e6bcdcba6b7fe 232 PANTHER PTHR30249 11 231 1.9E-83 T 26-04-2016 RGE_RS02880 5b0469ddd3fabfc4952e6bcdcba6b7fe 232 PANTHER PTHR30249:SF4 11 231 1.9E-83 T 26-04-2016 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 SUPERFAMILY SSF55874 501 678 3.14E-27 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 Gene3D G3DSA:3.40.50.2300 697 817 2.1E-26 T 26-04-2016 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 PANTHER PTHR24423:SF544 291 818 4.3E-114 T 26-04-2016 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 SUPERFAMILY SSF55785 295 420 7.68E-15 T 26-04-2016 IPR000014 PAS domain RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 PANTHER PTHR24423 291 818 4.3E-114 T 26-04-2016 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 SMART SM00387 551 680 1.4E-24 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 SMART SM00388 444 510 1.1E-7 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 552 678 7.1E-12 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 312 428 1.5E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 Pfam PF00512 His Kinase A (phospho-acceptor) domain 444 507 8.3E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 Pfam PF00072 Response regulator receiver domain 701 812 7.7E-16 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 SMART SM00448 699 812 1.2E-16 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 SUPERFAMILY SSF52172 700 817 2.85E-27 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 PRINTS PR00344 Bacterial sensor protein C-terminal signature 603 617 8.0E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 PRINTS PR00344 Bacterial sensor protein C-terminal signature 639 657 8.0E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 PRINTS PR00344 Bacterial sensor protein C-terminal signature 621 631 8.0E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 PRINTS PR00344 Bacterial sensor protein C-terminal signature 664 677 8.0E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 Pfam PF08447 PAS fold 330 410 8.6E-12 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 SUPERFAMILY SSF47384 439 507 1.69E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 Gene3D G3DSA:3.30.565.10 513 678 6.2E-28 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 Gene3D G3DSA:1.10.287.130 441 506 3.2E-4 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23345 896a3f03d9b27a00be80804a80f3f47a 818 Gene3D G3DSA:3.30.450.20 295 436 3.7E-19 T 26-04-2016 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 SUPERFAMILY SSF47384 215 288 2.16E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 Pfam PF16524 Periplasmic domain of Sensor histidine kinase RisS 42 147 3.7E-36 T 26-04-2016 IPR032408 Sensor histidine kinase RisS, periplasmic domain RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 PANTHER PTHR24423 170 442 4.4E-56 T 26-04-2016 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 PANTHER PTHR24423 17 29 4.4E-56 T 26-04-2016 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 SUPERFAMILY SSF55874 288 438 2.88E-31 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 Pfam PF00512 His Kinase A (phospho-acceptor) domain 234 287 2.8E-7 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 396 4.0E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 382 4.0E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 402 420 4.0E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 328 438 6.7E-18 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 Gene3D G3DSA:1.10.287.130 220 275 1.2E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 SMART SM00388 230 289 8.9E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 SUPERFAMILY SSF158472 176 226 1.31E-7 T 26-04-2016 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 SMART SM00304 176 229 8.7E-11 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 Gene3D G3DSA:3.30.565.10 276 440 1.7E-32 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 Pfam PF00672 HAMP domain 157 225 1.4E-15 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS13075 f3d7471be6e2e254a281bd0bf40936bb 442 SMART SM00387 327 442 1.6E-24 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10860 2a4e522ed66f58d5ebdf7c0733751a99 1371 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1026 1370 1.0E-64 T 26-04-2016 IPR007452 Translocation and assembly module TamB RGE_RS10860 2a4e522ed66f58d5ebdf7c0733751a99 1371 PANTHER PTHR36985 14 720 1.9E-53 T 26-04-2016 RGE_RS10860 2a4e522ed66f58d5ebdf7c0733751a99 1371 PANTHER PTHR36985 737 1371 1.9E-53 T 26-04-2016 RGE_RS14945 f27c5e451c820771cc93cae0c533ccf8 537 PANTHER PTHR34219:SF3 1 522 3.6E-115 T 26-04-2016 RGE_RS14945 f27c5e451c820771cc93cae0c533ccf8 537 Pfam PF03929 PepSY-associated TM region 11 377 2.6E-54 T 26-04-2016 IPR005625 PepSY-associated TM protein RGE_RS14945 f27c5e451c820771cc93cae0c533ccf8 537 PANTHER PTHR34219 1 522 3.6E-115 T 26-04-2016 RGE_RS00060 9a0b5800fd3116ae9ff298def23ab8ea 242 Pfam PF06508 Queuosine biosynthesis protein QueC 13 237 7.6E-70 T 26-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RGE_RS00060 9a0b5800fd3116ae9ff298def23ab8ea 242 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 14 230 2.0E-57 T 26-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RGE_RS00060 9a0b5800fd3116ae9ff298def23ab8ea 242 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 12 242 48.47 T 26-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RGE_RS00060 9a0b5800fd3116ae9ff298def23ab8ea 242 PANTHER PTHR11587 1 240 1.1E-73 T 26-04-2016 RGE_RS00060 9a0b5800fd3116ae9ff298def23ab8ea 242 Gene3D G3DSA:3.40.50.620 12 240 6.0E-73 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS00060 9a0b5800fd3116ae9ff298def23ab8ea 242 PANTHER PTHR11587:SF3 1 240 1.1E-73 T 26-04-2016 RGE_RS00060 9a0b5800fd3116ae9ff298def23ab8ea 242 SUPERFAMILY SSF52402 13 238 7.18E-56 T 26-04-2016 RGE_RS00060 9a0b5800fd3116ae9ff298def23ab8ea 242 PIRSF PIRSF006293 10 242 2.8E-66 T 26-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RGE_RS20125 7bc0672ea9b96fa427379e776cd06cbf 475 SMART SM00490 276 357 6.4E-31 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS20125 7bc0672ea9b96fa427379e776cd06cbf 475 Gene3D G3DSA:3.40.50.300 230 394 1.1E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20125 7bc0672ea9b96fa427379e776cd06cbf 475 SUPERFAMILY SSF52540 92 377 1.48E-74 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20125 7bc0672ea9b96fa427379e776cd06cbf 475 Pfam PF00271 Helicase conserved C-terminal domain 249 357 8.8E-27 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS20125 7bc0672ea9b96fa427379e776cd06cbf 475 PANTHER PTHR24031 10 416 1.2E-175 T 26-04-2016 RGE_RS20125 7bc0672ea9b96fa427379e776cd06cbf 475 Pfam PF00270 DEAD/DEAH box helicase 40 214 3.9E-51 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS20125 7bc0672ea9b96fa427379e776cd06cbf 475 Gene3D G3DSA:3.40.50.300 10 229 4.3E-83 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20125 7bc0672ea9b96fa427379e776cd06cbf 475 SMART SM00487 35 240 4.7E-63 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS20125 7bc0672ea9b96fa427379e776cd06cbf 475 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 171 179 - T 26-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RGE_RS03160 38d2065541bea52f7bf5a8e92dfb9298 91 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 3 76 3.6E-26 T 26-04-2016 IPR018680 Protein of unknown function DUF2164 RGE_RS04135 389e74b3b8f0866cd72fd14ac3ffe81a 185 SUPERFAMILY SSF52499 2 182 7.33E-36 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS04135 389e74b3b8f0866cd72fd14ac3ffe81a 185 PANTHER PTHR11080:SF16 1 183 1.0E-44 T 26-04-2016 RGE_RS04135 389e74b3b8f0866cd72fd14ac3ffe81a 185 PANTHER PTHR11080 1 183 1.0E-44 T 26-04-2016 RGE_RS04135 389e74b3b8f0866cd72fd14ac3ffe81a 185 Pfam PF00857 Isochorismatase family 3 157 4.5E-25 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS04135 389e74b3b8f0866cd72fd14ac3ffe81a 185 Gene3D G3DSA:3.40.50.850 2 183 2.0E-35 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 SUPERFAMILY SSF51735 1 139 2.36E-34 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 140 297 9.5E-23 T 26-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 Gene3D G3DSA:3.90.110.10 141 300 1.1E-51 T 26-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 TIGRFAM TIGR01771 L-LDH-NAD: L-lactate dehydrogenase 5 294 6.6E-92 T 26-04-2016 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|UniPathway: UPA00554 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 PANTHER PTHR11540 1 300 7.1E-107 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 ProSitePatterns PS00064 L-lactate dehydrogenase active site. 167 173 - T 26-04-2016 IPR018177 L-lactate dehydrogenase, active site GO:0004459|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|UniPathway: UPA00554 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 SUPERFAMILY SSF56327 138 299 1.34E-46 T 26-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 PIRSF PIRSF000102 1 302 6.3E-86 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 137 1.2E-27 T 26-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 Gene3D G3DSA:3.40.50.720 1 140 4.3E-39 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 PANTHER PTHR11540:SF3 1 300 7.1E-107 T 26-04-2016 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 PRINTS PR00086 L-lactate dehydrogenase signature 135 153 8.9E-34 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 PRINTS PR00086 L-lactate dehydrogenase signature 27 51 8.9E-34 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 PRINTS PR00086 L-lactate dehydrogenase signature 111 131 8.9E-34 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 PRINTS PR00086 L-lactate dehydrogenase signature 165 178 8.9E-34 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS12720 972a3890b1bd0de8fe36e6e8702af53d 303 PRINTS PR00086 L-lactate dehydrogenase signature 2 26 8.9E-34 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 PIRSF PIRSF000532 1 353 1.1E-109 T 26-04-2016 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 Pfam PF00365 Phosphofructokinase 3 302 1.3E-90 T 26-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 SUPERFAMILY SSF53784 1 341 2.62E-104 T 26-04-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 ProSitePatterns PS00433 Phosphofructokinase signature. 271 289 - T 26-04-2016 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 Hamap MF_01976 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 1 352 39.596 T 26-04-2016 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 126 143 2.3E-65 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 267 289 2.3E-65 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 99 115 2.3E-65 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 217 229 2.3E-65 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 164 180 2.3E-65 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 31 44 2.3E-65 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 182 199 2.3E-65 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 5 24 2.3E-65 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 144 162 2.3E-65 T 26-04-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 PANTHER PTHR13697 1 339 2.0E-104 T 26-04-2016 RGE_RS06975 0af47c8d6a24f74acbc829771d4f243a 354 Gene3D G3DSA:3.40.50.450 1 217 3.9E-65 T 26-04-2016 RGE_RS19675 3c98a6ca835da077a434830f50d36588 156 Pfam PF02152 Dihydroneopterin aldolase 22 131 9.9E-23 T 26-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RGE_RS19675 3c98a6ca835da077a434830f50d36588 156 SMART SM00905 22 132 2.0E-31 T 26-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RGE_RS19675 3c98a6ca835da077a434830f50d36588 156 TIGRFAM TIGR00526 folB_dom: FolB domain 20 133 6.5E-20 T 26-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RGE_RS19675 3c98a6ca835da077a434830f50d36588 156 PANTHER PTHR20941:SF3 20 133 2.1E-14 T 26-04-2016 RGE_RS19675 3c98a6ca835da077a434830f50d36588 156 SUPERFAMILY SSF55620 18 133 1.56E-28 T 26-04-2016 RGE_RS19675 3c98a6ca835da077a434830f50d36588 156 Gene3D G3DSA:3.30.1130.10 18 133 3.3E-31 T 26-04-2016 RGE_RS19675 3c98a6ca835da077a434830f50d36588 156 PANTHER PTHR20941 20 133 2.1E-14 T 26-04-2016 RGE_RS15630 cf7cb8cc3bf9162b3c59d4d60eabe62d 320 SUPERFAMILY SSF141986 161 313 5.75E-41 T 26-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RGE_RS15630 cf7cb8cc3bf9162b3c59d4d60eabe62d 320 PIRSF PIRSF028757 18 318 4.9E-63 T 26-04-2016 IPR003507 Peptidase family S66 RGE_RS15630 cf7cb8cc3bf9162b3c59d4d60eabe62d 320 PANTHER PTHR30237 30 309 6.5E-71 T 26-04-2016 RGE_RS15630 cf7cb8cc3bf9162b3c59d4d60eabe62d 320 SUPERFAMILY SSF52317 23 177 2.2E-26 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS15630 cf7cb8cc3bf9162b3c59d4d60eabe62d 320 PANTHER PTHR30237:SF2 30 309 6.5E-71 T 26-04-2016 RGE_RS15630 cf7cb8cc3bf9162b3c59d4d60eabe62d 320 Pfam PF02016 LD-carboxypeptidase 29 309 5.9E-66 T 26-04-2016 IPR003507 Peptidase family S66 RGE_RS15630 cf7cb8cc3bf9162b3c59d4d60eabe62d 320 Gene3D G3DSA:3.50.30.60 191 314 4.5E-42 T 26-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RGE_RS15630 cf7cb8cc3bf9162b3c59d4d60eabe62d 320 Gene3D G3DSA:3.40.50.10740 23 174 4.6E-32 T 26-04-2016 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain RGE_RS16370 57839d159bf022fce42ec1ea621860da 525 Gene3D G3DSA:3.50.50.60 221 301 1.4E-37 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16370 57839d159bf022fce42ec1ea621860da 525 Gene3D G3DSA:3.50.50.60 129 143 1.4E-37 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16370 57839d159bf022fce42ec1ea621860da 525 Gene3D G3DSA:3.50.50.60 7 63 1.4E-37 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16370 57839d159bf022fce42ec1ea621860da 525 Gene3D G3DSA:3.50.50.60 439 500 1.4E-37 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16370 57839d159bf022fce42ec1ea621860da 525 PANTHER PTHR10668:SF75 10 518 8.9E-78 T 26-04-2016 RGE_RS16370 57839d159bf022fce42ec1ea621860da 525 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 10 501 2.0E-75 T 26-04-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 RGE_RS16370 57839d159bf022fce42ec1ea621860da 525 SUPERFAMILY SSF51905 461 499 3.19E-57 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16370 57839d159bf022fce42ec1ea621860da 525 SUPERFAMILY SSF51905 7 326 3.19E-57 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16370 57839d159bf022fce42ec1ea621860da 525 Pfam PF01593 Flavin containing amine oxidoreductase 17 495 5.9E-20 T 26-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RGE_RS16370 57839d159bf022fce42ec1ea621860da 525 PANTHER PTHR10668 10 518 8.9E-78 T 26-04-2016 RGE_RS22610 e5dd045af9d643df843b529970bba92b 166 Pfam PF00436 Single-strand binding protein family 4 108 1.1E-42 T 26-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 RGE_RS22610 e5dd045af9d643df843b529970bba92b 166 Gene3D G3DSA:2.40.50.140 1 166 1.6E-58 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS22610 e5dd045af9d643df843b529970bba92b 166 PANTHER PTHR10302 3 166 2.0E-53 T 26-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RGE_RS22610 e5dd045af9d643df843b529970bba92b 166 Hamap MF_00984 Single-stranded DNA-binding protein. 4 112 37.895 T 26-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RGE_RS22610 e5dd045af9d643df843b529970bba92b 166 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 166 3.6E-55 T 26-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RGE_RS22610 e5dd045af9d643df843b529970bba92b 166 SUPERFAMILY SSF50249 3 166 4.46E-60 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 13 418 50.914 T 26-04-2016 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 Pfam PF00483 Nucleotidyl transferase 18 287 2.3E-67 T 26-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 PANTHER PTHR22572:SF10 17 393 7.6E-161 T 26-04-2016 RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 SUPERFAMILY SSF51161 306 405 1.51E-13 T 26-04-2016 IPR011004 Trimeric LpxA-like RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 22 41 - T 26-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 207 217 - T 26-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 17 392 1.9E-151 T 26-04-2016 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 Gene3D G3DSA:3.90.550.10 339 382 2.4E-74 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 Gene3D G3DSA:3.90.550.10 18 297 2.4E-74 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 PANTHER PTHR22572 17 393 7.6E-161 T 26-04-2016 RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 109 117 - T 26-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 SUPERFAMILY SSF53448 16 290 1.34E-75 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS14155 feb749bfb53a02289a42cd3721285a36 421 SUPERFAMILY SSF53448 373 388 1.34E-75 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS11490 02e979d69735c73f4d5d1c362d18765f 425 PANTHER PTHR30563 1 417 1.8E-87 T 26-04-2016 RGE_RS11490 02e979d69735c73f4d5d1c362d18765f 425 SUPERFAMILY SSF58113 34 164 4.45E-5 T 26-04-2016 RGE_RS11490 02e979d69735c73f4d5d1c362d18765f 425 Pfam PF02646 RmuC family 124 408 7.0E-79 T 26-04-2016 IPR003798 DNA recombination RmuC RGE_RS05690 312ee5f7e93993c779c7dccaa8781508 517 SUPERFAMILY SSF52096 8 257 7.78E-70 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS05690 312ee5f7e93993c779c7dccaa8781508 517 Gene3D G3DSA:3.90.226.10 271 517 6.3E-92 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS05690 312ee5f7e93993c779c7dccaa8781508 517 Pfam PF01039 Carboxyl transferase domain 30 514 1.0E-169 T 26-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS05690 312ee5f7e93993c779c7dccaa8781508 517 Gene3D G3DSA:3.90.226.10 7 257 4.6E-71 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS05690 312ee5f7e93993c779c7dccaa8781508 517 PANTHER PTHR22855 6 517 1.4E-274 T 26-04-2016 RGE_RS05690 312ee5f7e93993c779c7dccaa8781508 517 PANTHER PTHR22855:SF14 6 517 1.4E-274 T 26-04-2016 RGE_RS05690 312ee5f7e93993c779c7dccaa8781508 517 SUPERFAMILY SSF52096 271 517 2.23E-84 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS09995 1837b7f82db09fdbb77311a962eee7fd 207 PANTHER PTHR21392:SF0 2 193 5.0E-34 T 26-04-2016 RGE_RS09995 1837b7f82db09fdbb77311a962eee7fd 207 PANTHER PTHR21392 2 193 5.0E-34 T 26-04-2016 RGE_RS09995 1837b7f82db09fdbb77311a962eee7fd 207 SMART SM01144 8 199 5.9E-52 T 26-04-2016 IPR005636 DTW RGE_RS09995 1837b7f82db09fdbb77311a962eee7fd 207 Pfam PF03942 DTW domain 9 192 2.5E-41 T 26-04-2016 IPR005636 DTW RGE_RS00610 c72da66c4de8107c56e423f304c630e8 226 SUPERFAMILY SSF100950 6 220 6.98E-66 T 26-04-2016 RGE_RS00610 c72da66c4de8107c56e423f304c630e8 226 Pfam PF01144 Coenzyme A transferase 9 202 1.3E-31 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS00610 c72da66c4de8107c56e423f304c630e8 226 Gene3D G3DSA:3.40.810.20 7 216 4.2E-81 T 26-04-2016 RGE_RS00610 c72da66c4de8107c56e423f304c630e8 226 PANTHER PTHR13707 6 224 4.0E-107 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS00610 c72da66c4de8107c56e423f304c630e8 226 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 7 211 2.0E-91 T 26-04-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 RGE_RS00610 c72da66c4de8107c56e423f304c630e8 226 SMART SM00882 8 205 1.0E-55 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS16690 1a3739d56f16d366799c7e3b49fb92ad 146 Pfam PF12680 SnoaL-like domain 19 115 5.4E-9 T 26-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RGE_RS16690 1a3739d56f16d366799c7e3b49fb92ad 146 SUPERFAMILY SSF54427 18 136 1.04E-27 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS16690 1a3739d56f16d366799c7e3b49fb92ad 146 Gene3D G3DSA:3.10.450.50 11 125 1.3E-10 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS19295 f07f64afe325d0d024be7857a2c2bcfd 91 Gene3D G3DSA:1.10.1220.10 4 47 6.4E-7 T 26-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RGE_RS19295 f07f64afe325d0d024be7857a2c2bcfd 91 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 7 55 2.1E-6 T 26-04-2016 IPR022789 Antitoxin ParD RGE_RS19295 f07f64afe325d0d024be7857a2c2bcfd 91 SUPERFAMILY SSF47598 3 49 1.06E-10 T 26-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RGE_RS19295 f07f64afe325d0d024be7857a2c2bcfd 91 PANTHER PTHR36582 2 81 9.2E-15 T 26-04-2016 RGE_RS19295 f07f64afe325d0d024be7857a2c2bcfd 91 PANTHER PTHR36582:SF3 2 81 9.2E-15 T 26-04-2016 RGE_RS14350 25ababe4eff15b593192ba098ba9ceb1 470 TIGRFAM TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ 4 461 5.2E-208 T 26-04-2016 IPR012831 Precorrin 3B synthase CobZ RGE_RS14350 25ababe4eff15b593192ba098ba9ceb1 470 Gene3D G3DSA:3.90.700.10 255 394 2.6E-17 T 26-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RGE_RS14350 25ababe4eff15b593192ba098ba9ceb1 470 PANTHER PTHR11632 4 462 6.9E-257 T 26-04-2016 RGE_RS14350 25ababe4eff15b593192ba098ba9ceb1 470 PANTHER PTHR11632:SF47 4 462 6.9E-257 T 26-04-2016 RGE_RS14350 25ababe4eff15b593192ba098ba9ceb1 470 SUPERFAMILY SSF51905 396 462 1.63E-37 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS14350 25ababe4eff15b593192ba098ba9ceb1 470 SUPERFAMILY SSF51905 1 191 1.63E-37 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS14350 25ababe4eff15b593192ba098ba9ceb1 470 SUPERFAMILY SSF56425 265 402 1.01E-21 T 26-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RGE_RS14350 25ababe4eff15b593192ba098ba9ceb1 470 Gene3D G3DSA:3.50.50.60 398 460 2.3E-47 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS14350 25ababe4eff15b593192ba098ba9ceb1 470 Gene3D G3DSA:3.50.50.60 4 235 2.3E-47 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS14350 25ababe4eff15b593192ba098ba9ceb1 470 Pfam PF00890 FAD binding domain 4 433 1.1E-34 T 26-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RGE_RS15370 b06cab35a69f11738ef7649624bfce0b 320 Pfam PF00582 Universal stress protein family 169 307 4.8E-15 T 26-04-2016 IPR006016 UspA GO:0006950 RGE_RS15370 b06cab35a69f11738ef7649624bfce0b 320 Gene3D G3DSA:3.40.50.620 27 155 3.3E-7 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS15370 b06cab35a69f11738ef7649624bfce0b 320 PRINTS PR01438 Universal stress protein signature 169 187 2.4E-7 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS15370 b06cab35a69f11738ef7649624bfce0b 320 PRINTS PR01438 Universal stress protein signature 285 307 2.4E-7 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS15370 b06cab35a69f11738ef7649624bfce0b 320 PRINTS PR01438 Universal stress protein signature 267 279 2.4E-7 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS15370 b06cab35a69f11738ef7649624bfce0b 320 SUPERFAMILY SSF52402 40 162 5.44E-9 T 26-04-2016 RGE_RS15370 b06cab35a69f11738ef7649624bfce0b 320 Gene3D G3DSA:3.40.50.620 156 307 2.7E-18 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS15370 b06cab35a69f11738ef7649624bfce0b 320 SUPERFAMILY SSF52402 169 307 2.43E-15 T 26-04-2016 RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 PANTHER PTHR11938:SF84 1 206 1.9E-109 T 26-04-2016 RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 PIRSF PIRSF036298 1 308 6.2E-148 T 26-04-2016 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 288 1.0E-138 T 26-04-2016 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 Gene3D G3DSA:3.30.70.20 112 153 1.1E-20 T 26-04-2016 RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 PANTHER PTHR11938 1 206 1.9E-109 T 26-04-2016 RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 Pfam PF13247 4Fe-4S dicluster domain 93 189 7.6E-24 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 134 145 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 Gene3D G3DSA:3.30.70.20 154 252 3.8E-30 T 26-04-2016 RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 Pfam PF09163 Formate dehydrogenase N, transmembrane 247 287 2.6E-17 T 26-04-2016 IPR015246 Formate dehydrogenase, transmembrane RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 SUPERFAMILY SSF54862 29 265 1.78E-68 T 26-04-2016 RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 Gene3D G3DSA:3.30.70.20 82 111 2.6E-12 T 26-04-2016 RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 Gene3D G3DSA:3.30.70.20 32 48 2.6E-12 T 26-04-2016 RGE_RS05615 b2ce701c0744e645fca290f263f79c67 309 Gene3D G3DSA:1.20.5.480 253 294 1.2E-16 T 26-04-2016 RGE_RS01210 edba01276ed404f0728d8e42d26e0425 392 Pfam PF03594 Benzoate membrane transport protein 9 384 5.2E-143 T 26-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 RGE_RS01210 edba01276ed404f0728d8e42d26e0425 392 TIGRFAM TIGR00843 benE: benzoate transporter 6 384 2.7E-130 T 26-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 RGE_RS01210 edba01276ed404f0728d8e42d26e0425 392 PANTHER PTHR30199 1 389 1.0E-155 T 26-04-2016 RGE_RS01210 edba01276ed404f0728d8e42d26e0425 392 PANTHER PTHR30199:SF0 1 389 1.0E-155 T 26-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 RGE_RS03740 634b0d78c3f7eb8338448482ada240ba 456 PANTHER PTHR21666:SF221 181 415 8.3E-52 T 26-04-2016 RGE_RS03740 634b0d78c3f7eb8338448482ada240ba 456 Gene3D G3DSA:2.70.70.10 278 416 1.6E-49 T 26-04-2016 RGE_RS03740 634b0d78c3f7eb8338448482ada240ba 456 PANTHER PTHR21666 181 415 8.3E-52 T 26-04-2016 RGE_RS03740 634b0d78c3f7eb8338448482ada240ba 456 SUPERFAMILY SSF51261 162 414 7.32E-72 T 26-04-2016 IPR011055 Duplicated hybrid motif RGE_RS03740 634b0d78c3f7eb8338448482ada240ba 456 Pfam PF01551 Peptidase family M23 318 412 6.6E-35 T 26-04-2016 IPR016047 Peptidase M23 RGE_RS15430 7e160c7c5b176f17dc0d76ba55da840f 261 PANTHER PTHR30164 1 260 4.5E-78 T 26-04-2016 RGE_RS15430 7e160c7c5b176f17dc0d76ba55da840f 261 SUPERFAMILY SSF55486 46 255 7.25E-42 T 26-04-2016 RGE_RS15430 7e160c7c5b176f17dc0d76ba55da840f 261 Pfam PF06167 Glucose-regulated metallo-peptidase M90 10 253 4.3E-91 T 26-04-2016 IPR010384 MtfA family RGE_RS15430 7e160c7c5b176f17dc0d76ba55da840f 261 Gene3D G3DSA:3.40.390.10 43 254 6.1E-35 T 26-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RGE_RS19280 2f044413e74ac19fe1d7708f90e3e7e2 375 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 354 1.5E-33 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS19280 2f044413e74ac19fe1d7708f90e3e7e2 375 PANTHER PTHR30482 6 103 2.6E-162 T 26-04-2016 RGE_RS19280 2f044413e74ac19fe1d7708f90e3e7e2 375 PANTHER PTHR30482 130 375 2.6E-162 T 26-04-2016 RGE_RS19280 2f044413e74ac19fe1d7708f90e3e7e2 375 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 52 365 1.9E-134 T 26-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC RGE_RS19280 2f044413e74ac19fe1d7708f90e3e7e2 375 PANTHER PTHR30482:SF4 6 103 2.6E-162 T 26-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC RGE_RS19280 2f044413e74ac19fe1d7708f90e3e7e2 375 PANTHER PTHR30482:SF4 130 375 2.6E-162 T 26-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC RGE_RS14010 107b2eb1b1c22b3bc1e20d9bd590e368 470 PANTHER PTHR23538 12 466 1.9E-68 T 26-04-2016 RGE_RS14010 107b2eb1b1c22b3bc1e20d9bd590e368 470 Gene3D G3DSA:1.20.1250.20 36 238 2.4E-9 T 26-04-2016 RGE_RS14010 107b2eb1b1c22b3bc1e20d9bd590e368 470 PIRSF PIRSF016565 18 468 4.4E-124 T 26-04-2016 IPR026036 PucC protein RGE_RS14010 107b2eb1b1c22b3bc1e20d9bd590e368 470 Pfam PF03209 PUCC protein 55 464 8.4E-169 T 26-04-2016 IPR004896 PucC-related RGE_RS14010 107b2eb1b1c22b3bc1e20d9bd590e368 470 Gene3D G3DSA:1.20.1250.20 279 467 2.3E-9 T 26-04-2016 RGE_RS14010 107b2eb1b1c22b3bc1e20d9bd590e368 470 SUPERFAMILY SSF103473 35 466 8.5E-28 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS16420 a8ba6cc21300627cc0eae11628f4d91f 334 SUPERFAMILY SSF52540 36 279 4.12E-43 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16420 a8ba6cc21300627cc0eae11628f4d91f 334 PRINTS PR00091 Nitrogenase component II signature 64 79 7.1E-27 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS16420 a8ba6cc21300627cc0eae11628f4d91f 334 PRINTS PR00091 Nitrogenase component II signature 42 55 7.1E-27 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS16420 a8ba6cc21300627cc0eae11628f4d91f 334 PRINTS PR00091 Nitrogenase component II signature 119 133 7.1E-27 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS16420 a8ba6cc21300627cc0eae11628f4d91f 334 PRINTS PR00091 Nitrogenase component II signature 158 173 7.1E-27 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS16420 a8ba6cc21300627cc0eae11628f4d91f 334 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 38 299 3.5E-96 T 26-04-2016 RGE_RS16420 a8ba6cc21300627cc0eae11628f4d91f 334 PANTHER PTHR13696 8 288 5.6E-62 T 26-04-2016 RGE_RS16420 a8ba6cc21300627cc0eae11628f4d91f 334 ProSitePatterns PS00746 NifH/frxC family signature 1. 121 133 - T 26-04-2016 IPR030655 NifH/chlL conserved site RGE_RS16420 a8ba6cc21300627cc0eae11628f4d91f 334 Gene3D G3DSA:3.40.50.300 37 293 1.8E-52 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16420 a8ba6cc21300627cc0eae11628f4d91f 334 PANTHER PTHR13696:SF5 8 288 5.6E-62 T 26-04-2016 RGE_RS16420 a8ba6cc21300627cc0eae11628f4d91f 334 TIGRFAM TIGR02016 BchX: chlorophyllide reductase iron protein subunit X 37 318 4.4E-128 T 26-04-2016 IPR010246 Chlorophyllide reductase iron protein subunit X GO:0005524|GO:0015979|GO:0016628|GO:0030494|GO:0051539 KEGG: 00860+1.3.99.35|MetaCyc: PWY-5526|UniPathway: UPA00669 RGE_RS16420 a8ba6cc21300627cc0eae11628f4d91f 334 ProSitePatterns PS00692 NifH/frxC family signature 2. 159 172 - T 26-04-2016 IPR030655 NifH/chlL conserved site RGE_RS06035 8ab062981998c402d154d85388ab07d1 386 SUPERFAMILY SSF56059 1 238 1.51E-82 T 26-04-2016 RGE_RS06035 8ab062981998c402d154d85388ab07d1 386 PIRSF PIRSF001554 1 386 4.0E-150 T 26-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RGE_RS06035 8ab062981998c402d154d85388ab07d1 386 Gene3D G3DSA:3.30.1490.20 22 95 4.9E-35 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS06035 8ab062981998c402d154d85388ab07d1 386 Gene3D G3DSA:3.40.50.261 241 383 4.8E-65 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS06035 8ab062981998c402d154d85388ab07d1 386 PANTHER PTHR11815 1 386 1.0E-222 T 26-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RGE_RS06035 8ab062981998c402d154d85388ab07d1 386 Pfam PF00549 CoA-ligase 262 380 3.6E-26 T 26-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS06035 8ab062981998c402d154d85388ab07d1 386 Gene3D G3DSA:3.30.470.20 96 239 6.1E-56 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS06035 8ab062981998c402d154d85388ab07d1 386 SUPERFAMILY SSF52210 239 385 9.42E-55 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS06035 8ab062981998c402d154d85388ab07d1 386 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 2.3E-158 T 26-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RGE_RS06035 8ab062981998c402d154d85388ab07d1 386 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 26-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS06035 8ab062981998c402d154d85388ab07d1 386 Pfam PF08442 ATP-grasp domain 2 202 4.3E-79 T 26-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS06035 8ab062981998c402d154d85388ab07d1 386 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 41.571 T 26-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RGE_RS00890 12663965ef7cd8124a6d5e0d03c7e560 272 SMART SM00382 41 233 7.5E-17 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS00890 12663965ef7cd8124a6d5e0d03c7e560 272 SUPERFAMILY SSF52540 5 255 1.25E-71 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00890 12663965ef7cd8124a6d5e0d03c7e560 272 PANTHER PTHR24220 7 258 6.5E-115 T 26-04-2016 RGE_RS00890 12663965ef7cd8124a6d5e0d03c7e560 272 Gene3D G3DSA:3.40.50.300 4 257 1.3E-79 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00890 12663965ef7cd8124a6d5e0d03c7e560 272 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS00890 12663965ef7cd8124a6d5e0d03c7e560 272 Pfam PF00005 ABC transporter 33 183 1.7E-31 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS00890 12663965ef7cd8124a6d5e0d03c7e560 272 PANTHER PTHR24220:SF493 7 258 6.5E-115 T 26-04-2016 RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SUPERFAMILY SSF110296 1873 1989 9.42E-5 T 26-04-2016 RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SUPERFAMILY SSF110296 1771 1820 9.42E-5 T 26-04-2016 RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 PANTHER PTHR35037:SF3 867 1531 7.2E-39 T 26-04-2016 RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 615 624 - T 26-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Pfam PF14252 Domain of unknown function (DUF4347) 82 245 1.4E-57 T 26-04-2016 IPR025592 Domain of unknown function DUF4347 RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 PANTHER PTHR35037 867 1531 7.2E-39 T 26-04-2016 RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SUPERFAMILY SSF51126 594 950 6.28E-5 T 26-04-2016 IPR011050 Pectin lyase fold/virulence factor RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SUPERFAMILY SSF51126 1051 1395 8.47E-29 T 26-04-2016 IPR011050 Pectin lyase fold/virulence factor RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Gene3D G3DSA:2.60.40.10 2780 2860 2.4E-20 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SUPERFAMILY SSF51126 1308 1556 3.04E-21 T 26-04-2016 IPR011050 Pectin lyase fold/virulence factor RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Pfam PF12951 Passenger-associated-transport-repeat 879 909 4.2E-9 T 26-04-2016 IPR013425 Autotransporter-associated beta strand repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Pfam PF12951 Passenger-associated-transport-repeat 1075 1104 1.1E-8 T 26-04-2016 IPR013425 Autotransporter-associated beta strand repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Pfam PF12951 Passenger-associated-transport-repeat 1331 1360 1.2E-8 T 26-04-2016 IPR013425 Autotransporter-associated beta strand repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Pfam PF12951 Passenger-associated-transport-repeat 1161 1189 1.0E-6 T 26-04-2016 IPR013425 Autotransporter-associated beta strand repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Pfam PF12951 Passenger-associated-transport-repeat 1246 1274 5.3E-8 T 26-04-2016 IPR013425 Autotransporter-associated beta strand repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Pfam PF12951 Passenger-associated-transport-repeat 1417 1446 3.9E-7 T 26-04-2016 IPR013425 Autotransporter-associated beta strand repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SMART SM00710 988 1023 1500.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SMART SM00710 2201 2243 8800.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SMART SM00710 328 361 800.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SMART SM00710 1752 1774 8800.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SMART SM00710 958 977 4800.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SMART SM00710 1132 1153 5500.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SMART SM00710 504 532 4300.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SMART SM00710 2165 2189 7300.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SMART SM00710 1166 1204 4900.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Gene3D G3DSA:2.160.20.20 1303 1379 3.5E-9 T 26-04-2016 IPR012332 P22 tailspike C-terminal domain-like RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Gene3D G3DSA:2.160.20.20 1133 1208 1.4E-6 T 26-04-2016 IPR012332 P22 tailspike C-terminal domain-like RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Gene3D G3DSA:2.160.20.20 1380 1480 4.1E-7 T 26-04-2016 IPR012332 P22 tailspike C-terminal domain-like RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Gene3D G3DSA:2.160.20.20 1210 1297 1.3E-9 T 26-04-2016 IPR012332 P22 tailspike C-terminal domain-like RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 Gene3D G3DSA:2.160.20.20 1047 1126 4.6E-8 T 26-04-2016 IPR012332 P22 tailspike C-terminal domain-like RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SMART SM00736 2768 2871 9.6E-15 T 26-04-2016 IPR006644 Dystroglycan-type cadherin-like GO:0016020 RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1416 1447 3.2E-7 T 26-04-2016 IPR013425 Autotransporter-associated beta strand repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1074 1104 1.0E-9 T 26-04-2016 IPR013425 Autotransporter-associated beta strand repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1330 1360 4.3E-10 T 26-04-2016 IPR013425 Autotransporter-associated beta strand repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1161 1190 2.8E-7 T 26-04-2016 IPR013425 Autotransporter-associated beta strand repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1245 1274 4.4E-7 T 26-04-2016 IPR013425 Autotransporter-associated beta strand repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 878 910 3.4E-10 T 26-04-2016 IPR013425 Autotransporter-associated beta strand repeat RGE_RS18645 9645cf3b74dd7b185b7991f26ee60891 2952 SUPERFAMILY SSF49313 2776 2858 2.98E-19 T 26-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 SUPERFAMILY SSF50249 405 531 2.8E-24 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 221 527 7.8E-96 T 26-04-2016 IPR014146 DNA ligase D, ligase domain RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 PANTHER PTHR10459 216 689 2.5E-68 T 26-04-2016 RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 Gene3D G3DSA:3.30.1490.70 215 243 2.3E-16 T 26-04-2016 RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 Gene3D G3DSA:3.30.1490.70 360 403 2.3E-16 T 26-04-2016 RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 Pfam PF13298 DNA polymerase Ligase (LigD) 44 148 1.2E-37 T 26-04-2016 IPR014144 DNA ligase D, 3'-phosphoesterase domain RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 Gene3D G3DSA:3.30.470.30 244 351 6.1E-27 T 26-04-2016 RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 12 168 5.0E-69 T 26-04-2016 IPR014144 DNA ligase D, 3'-phosphoesterase domain RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 Gene3D G3DSA:2.40.50.140 404 530 4.1E-38 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 554 797 1.1E-81 T 26-04-2016 IPR014145 DNA ligase D, polymerase domain RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 Pfam PF04679 ATP dependent DNA ligase C terminal region 421 522 3.8E-24 T 26-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 PANTHER PTHR10459:SF70 216 689 2.5E-68 T 26-04-2016 RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 SUPERFAMILY SSF56091 211 403 1.08E-43 T 26-04-2016 RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 Pfam PF01068 ATP dependent DNA ligase domain 233 402 5.6E-19 T 26-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 RGE_RS12855 6dae728ad3ff3edfc3701886a78be7ce 851 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 231 826 1.1E-191 T 26-04-2016 IPR014143 DNA ligase D RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 PIRSF PIRSF001174 5 777 0.0 T 26-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 SMART SM00382 350 494 3.2E-9 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 PANTHER PTHR10046:SF43 11 778 0.0 T 26-04-2016 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 SUPERFAMILY SSF54211 597 772 2.81E-59 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 678 686 - T 26-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 TIGRFAM TIGR00763 lon: endopeptidase La 15 773 9.1E-296 T 26-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 572 774 4.8E-96 T 26-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 SUPERFAMILY SSF52540 316 590 2.03E-49 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 Hamap MF_01973 Lon protease [lon]. 14 774 70.608 T 26-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 705 724 3.54E-53 T 26-04-2016 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 358 377 3.54E-53 T 26-04-2016 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 675 694 3.54E-53 T 26-04-2016 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 728 746 3.54E-53 T 26-04-2016 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 597 613 3.54E-53 T 26-04-2016 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 Gene3D G3DSA:3.30.230.10 592 773 5.4E-77 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 SMART SM00464 13 205 2.0E-70 T 26-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 354 491 3.0E-18 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 Gene3D G3DSA:1.10.8.60 503 586 3.2E-32 T 26-04-2016 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 SUPERFAMILY SSF88697 13 204 3.48E-52 T 26-04-2016 IPR015947 PUA-like domain RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 13 204 5.3E-41 T 26-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 PANTHER PTHR10046 11 778 0.0 T 26-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 RGE_RS13595 add040e8b6631872e6dc57b09db15bbc 807 Gene3D G3DSA:3.40.50.300 314 502 6.6E-33 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09560 85c3563037d08a1f075371a288028ef0 103 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 5 103 12.513 T 26-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RGE_RS09560 85c3563037d08a1f075371a288028ef0 103 Pfam PF02049 Flagellar hook-basal body complex protein FliE 20 102 7.6E-17 T 26-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 Pfam PF00082 Subtilase family 151 435 2.6E-43 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 PANTHER PTHR10795:SF419 1 181 9.4E-55 T 26-04-2016 RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 PANTHER PTHR10795:SF419 395 463 9.4E-55 T 26-04-2016 RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 PANTHER PTHR10795:SF419 203 376 9.4E-55 T 26-04-2016 RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 397 407 - T 26-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 Gene3D G3DSA:3.40.50.200 111 462 1.4E-69 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 PRINTS PR00723 Subtilisin serine protease family (S8) signature 396 412 3.8E-11 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 PRINTS PR00723 Subtilisin serine protease family (S8) signature 208 221 3.8E-11 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 PRINTS PR00723 Subtilisin serine protease family (S8) signature 150 169 3.8E-11 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 PANTHER PTHR10795 1 181 9.4E-55 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 PANTHER PTHR10795 395 463 9.4E-55 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 PANTHER PTHR10795 203 376 9.4E-55 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 SUPERFAMILY SSF52743 135 464 4.06E-64 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 155 165 - T 26-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site RGE_RS01820 5e29e6aead71001fd79a6ba29e5ce5c0 495 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 212 222 - T 26-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site RGE_RS12835 94b73cb81f98fafdc214d60170c04b07 320 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 1 295 1.4E-123 T 26-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 RGE_RS12835 94b73cb81f98fafdc214d60170c04b07 320 PANTHER PTHR11082:SF29 1 311 1.4E-133 T 26-04-2016 RGE_RS12835 94b73cb81f98fafdc214d60170c04b07 320 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 77 95 - T 26-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RGE_RS12835 94b73cb81f98fafdc214d60170c04b07 320 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 1 313 46.131 T 26-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 RGE_RS12835 94b73cb81f98fafdc214d60170c04b07 320 Pfam PF01207 Dihydrouridine synthase (Dus) 1 302 6.0E-77 T 26-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RGE_RS12835 94b73cb81f98fafdc214d60170c04b07 320 SUPERFAMILY SSF51395 1 290 6.92E-67 T 26-04-2016 RGE_RS12835 94b73cb81f98fafdc214d60170c04b07 320 PANTHER PTHR11082 1 311 1.4E-133 T 26-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RGE_RS12835 94b73cb81f98fafdc214d60170c04b07 320 PIRSF PIRSF006621 1 287 1.6E-69 T 26-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RGE_RS12835 94b73cb81f98fafdc214d60170c04b07 320 Gene3D G3DSA:3.20.20.70 1 239 1.7E-68 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS21685 e6b356831ff650e2b36702a869f4163e 504 Gene3D G3DSA:3.40.50.880 274 464 1.4E-22 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS21685 e6b356831ff650e2b36702a869f4163e 504 PANTHER PTHR21343 1 503 8.0E-159 T 26-04-2016 RGE_RS21685 e6b356831ff650e2b36702a869f4163e 504 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 504 168.708 T 26-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 RGE_RS21685 e6b356831ff650e2b36702a869f4163e 504 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 20 497 2.3E-108 T 26-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 RGE_RS21685 e6b356831ff650e2b36702a869f4163e 504 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 275 458 4.1E-50 T 26-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 RGE_RS21685 e6b356831ff650e2b36702a869f4163e 504 SUPERFAMILY SSF52540 18 256 8.27E-44 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21685 e6b356831ff650e2b36702a869f4163e 504 Gene3D G3DSA:3.40.50.300 18 251 4.9E-41 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21685 e6b356831ff650e2b36702a869f4163e 504 PANTHER PTHR21343:SF1 1 503 8.0E-159 T 26-04-2016 RGE_RS21685 e6b356831ff650e2b36702a869f4163e 504 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 20 243 2.4E-21 T 26-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RGE_RS21685 e6b356831ff650e2b36702a869f4163e 504 SUPERFAMILY SSF52317 275 466 5.2E-32 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS06745 5f66fc0fe5b61834f7f4eecf8298e5c9 193 PANTHER PTHR23133 4 182 2.6E-52 T 26-04-2016 RGE_RS06745 5f66fc0fe5b61834f7f4eecf8298e5c9 193 SUPERFAMILY SSF56784 3 174 7.85E-50 T 26-04-2016 IPR023214 HAD-like domain RGE_RS06745 5f66fc0fe5b61834f7f4eecf8298e5c9 193 Pfam PF13242 HAD-hyrolase-like 107 164 3.5E-10 T 26-04-2016 RGE_RS06745 5f66fc0fe5b61834f7f4eecf8298e5c9 193 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 5 153 1.5E-38 T 26-04-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 RGE_RS06745 5f66fc0fe5b61834f7f4eecf8298e5c9 193 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 4 161 6.7E-56 T 26-04-2016 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 RGE_RS06745 5f66fc0fe5b61834f7f4eecf8298e5c9 193 Gene3D G3DSA:3.40.50.1000 4 174 7.3E-59 T 26-04-2016 IPR023214 HAD-like domain RGE_RS06745 5f66fc0fe5b61834f7f4eecf8298e5c9 193 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 151 2.2E-32 T 26-04-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA RGE_RS06745 5f66fc0fe5b61834f7f4eecf8298e5c9 193 PANTHER PTHR23133:SF3 4 182 2.6E-52 T 26-04-2016 RGE_RS06745 5f66fc0fe5b61834f7f4eecf8298e5c9 193 PIRSF PIRSF004682 1 183 2.6E-63 T 26-04-2016 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 RGE_RS17765 3fd0ab0a039cce78b5fc959640d272db 378 PANTHER PTHR10655 93 281 5.3E-17 T 26-04-2016 RGE_RS17765 3fd0ab0a039cce78b5fc959640d272db 378 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 97 299 5.7E-50 T 26-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 RGE_RS17765 3fd0ab0a039cce78b5fc959640d272db 378 Pfam PF10503 Esterase PHB depolymerase 94 295 6.2E-68 T 26-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 RGE_RS17765 3fd0ab0a039cce78b5fc959640d272db 378 Gene3D G3DSA:3.40.50.1820 73 375 1.1E-49 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS17765 3fd0ab0a039cce78b5fc959640d272db 378 SUPERFAMILY SSF53474 90 298 2.57E-40 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS17765 3fd0ab0a039cce78b5fc959640d272db 378 SUPERFAMILY SSF53474 332 348 2.57E-40 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS17765 3fd0ab0a039cce78b5fc959640d272db 378 PANTHER PTHR10655:SF33 93 281 5.3E-17 T 26-04-2016 RGE_RS05740 b8ef2fa2c7bc41042164f5566fe140e4 587 SUPERFAMILY SSF52743 117 387 3.4E-77 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS05740 b8ef2fa2c7bc41042164f5566fe140e4 587 Gene3D G3DSA:3.40.50.200 86 387 5.8E-83 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS05740 b8ef2fa2c7bc41042164f5566fe140e4 587 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 139 150 - T 26-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site RGE_RS05740 b8ef2fa2c7bc41042164f5566fe140e4 587 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 176 186 - T 26-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site RGE_RS05740 b8ef2fa2c7bc41042164f5566fe140e4 587 Pfam PF00082 Subtilase family 134 376 1.8E-36 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS05740 b8ef2fa2c7bc41042164f5566fe140e4 587 PANTHER PTHR10795 86 401 2.5E-55 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS05740 b8ef2fa2c7bc41042164f5566fe140e4 587 PIRSF PIRSF037901 5 587 6.8E-222 T 26-04-2016 IPR017315 Peptidase S8A, subtilisin-related, proteobacteria-2 RGE_RS05740 b8ef2fa2c7bc41042164f5566fe140e4 587 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 326 336 - T 26-04-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site RGE_RS05740 b8ef2fa2c7bc41042164f5566fe140e4 587 PANTHER PTHR10795:SF419 86 401 2.5E-55 T 26-04-2016 RGE_RS05740 b8ef2fa2c7bc41042164f5566fe140e4 587 PRINTS PR00723 Subtilisin serine protease family (S8) signature 325 341 1.1E-19 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS05740 b8ef2fa2c7bc41042164f5566fe140e4 587 PRINTS PR00723 Subtilisin serine protease family (S8) signature 172 185 1.1E-19 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS05740 b8ef2fa2c7bc41042164f5566fe140e4 587 PRINTS PR00723 Subtilisin serine protease family (S8) signature 134 153 1.1E-19 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 Pfam PF03023 MviN-like protein 28 473 5.0E-127 T 26-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 PIRSF PIRSF002869 1 517 1.3E-144 T 26-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 PANTHER PTHR11206 61 78 2.9E-70 T 26-04-2016 RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 PANTHER PTHR11206 221 449 2.9E-70 T 26-04-2016 RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 PRINTS PR01806 Virulence factor MviN signature 129 153 4.7E-74 T 26-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 PRINTS PR01806 Virulence factor MviN signature 52 68 4.7E-74 T 26-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 PRINTS PR01806 Virulence factor MviN signature 364 383 4.7E-74 T 26-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 PRINTS PR01806 Virulence factor MviN signature 33 52 4.7E-74 T 26-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 PRINTS PR01806 Virulence factor MviN signature 416 433 4.7E-74 T 26-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 PRINTS PR01806 Virulence factor MviN signature 153 174 4.7E-74 T 26-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 PRINTS PR01806 Virulence factor MviN signature 266 292 4.7E-74 T 26-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 3 509 1.0E-133 T 26-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 PANTHER PTHR11206:SF90 61 78 2.9E-70 T 26-04-2016 RGE_RS06555 5df419a48ad4522be05ae552e5e5b556 518 PANTHER PTHR11206:SF90 221 449 2.9E-70 T 26-04-2016 RGE_RS09505 7a2a2dfeca8aae0ce796920b0c0c5077 397 Pfam PF13487 HD domain 208 269 3.8E-16 T 26-04-2016 RGE_RS09505 7a2a2dfeca8aae0ce796920b0c0c5077 397 SUPERFAMILY SSF109604 150 315 6.0E-25 T 26-04-2016 RGE_RS09505 7a2a2dfeca8aae0ce796920b0c0c5077 397 Gene3D G3DSA:1.10.3210.10 148 286 1.7E-19 T 26-04-2016 IPR006674 HD domain RGE_RS09505 7a2a2dfeca8aae0ce796920b0c0c5077 397 Pfam PF11871 Domain of unknown function (DUF3391) 2 124 1.3E-28 T 26-04-2016 IPR021812 Protein of unknown function DUF3391 RGE_RS09505 7a2a2dfeca8aae0ce796920b0c0c5077 397 SMART SM00471 152 288 5.6E-5 T 26-04-2016 IPR003607 HD/PDEase domain RGE_RS11250 a2f3c7a1c0a7d92f88de1acd6ed2e3b8 553 Pfam PF08019 Domain of unknown function (DUF1705) 57 209 2.9E-45 T 26-04-2016 IPR012549 Domain of unknown function DUF1705 GO:0016021 RGE_RS11250 a2f3c7a1c0a7d92f88de1acd6ed2e3b8 553 Gene3D G3DSA:3.40.720.10 384 534 4.2E-12 T 26-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RGE_RS11250 a2f3c7a1c0a7d92f88de1acd6ed2e3b8 553 PANTHER PTHR30443 2 552 4.0E-235 T 26-04-2016 RGE_RS11250 a2f3c7a1c0a7d92f88de1acd6ed2e3b8 553 SUPERFAMILY SSF53649 234 534 2.76E-19 T 26-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RGE_RS11250 a2f3c7a1c0a7d92f88de1acd6ed2e3b8 553 Pfam PF00884 Sulfatase 237 531 9.4E-50 T 26-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RGE_RS11250 a2f3c7a1c0a7d92f88de1acd6ed2e3b8 553 PANTHER PTHR30443:SF0 2 552 4.0E-235 T 26-04-2016 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 Hamap MF_00020 Acetate kinase [ackA]. 1 393 133.622 T 26-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 Gene3D G3DSA:3.30.420.40 110 202 8.8E-7 T 26-04-2016 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 PANTHER PTHR21060:SF11 5 391 3.7E-121 T 26-04-2016 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 PANTHER PTHR21060 5 391 3.7E-121 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 PRINTS PR00471 Acetate kinase family signature 293 306 1.4E-28 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 PRINTS PR00471 Acetate kinase family signature 9 20 1.4E-28 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 PRINTS PR00471 Acetate kinase family signature 371 383 1.4E-28 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 PRINTS PR00471 Acetate kinase family signature 172 185 1.4E-28 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 PRINTS PR00471 Acetate kinase family signature 200 221 1.4E-28 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 PRINTS PR00471 Acetate kinase family signature 315 331 1.4E-28 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 9 20 - T 26-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 TIGRFAM TIGR00016 ackA: acetate kinase 8 386 1.8E-88 T 26-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 PIRSF PIRSF000722 5 393 1.1E-109 T 26-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 SUPERFAMILY SSF53067 157 390 5.46E-62 T 26-04-2016 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 SUPERFAMILY SSF53067 8 192 3.37E-49 T 26-04-2016 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 Pfam PF00871 Acetokinase family 9 383 2.1E-89 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS01905 d34e0a89330720968b4e5dd1e23c882e 393 Gene3D G3DSA:3.30.420.40 203 386 7.4E-56 T 26-04-2016 RGE_RS16865 a45ab866df2b90ccba89f0e6456b4912 320 PANTHER PTHR34351 9 317 1.1E-51 T 26-04-2016 RGE_RS16865 a45ab866df2b90ccba89f0e6456b4912 320 PANTHER PTHR34351:SF1 9 317 1.1E-51 T 26-04-2016 RGE_RS16865 a45ab866df2b90ccba89f0e6456b4912 320 Pfam PF01882 Protein of unknown function DUF58 216 291 4.4E-14 T 26-04-2016 IPR002881 Domain of unknown function DUF58 RGE_RS20380 7f056b6366e4d1bd4959bbec40b99b21 68 Pfam PF11137 Protein of unknown function (DUF2909) 1 63 3.3E-18 T 26-04-2016 IPR021313 Protein of unknown function DUF2909 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 Gene3D G3DSA:3.30.390.50 374 473 4.4E-37 T 26-04-2016 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 Pfam PF01799 [2Fe-2S] binding domain 90 165 9.6E-29 T 26-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 SUPERFAMILY SSF47741 101 178 1.16E-30 T 26-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 SUPERFAMILY SSF56176 198 363 1.31E-50 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 PANTHER PTHR11908 12 472 8.8E-118 T 26-04-2016 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 10 473 1.1E-195 T 26-04-2016 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 47 55 - T 26-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 SUPERFAMILY SSF55447 370 477 8.24E-34 T 26-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 Gene3D G3DSA:3.10.20.30 7 91 1.3E-24 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 Gene3D G3DSA:1.10.150.120 92 172 1.2E-33 T 26-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 Gene3D G3DSA:3.30.465.10 251 364 7.5E-35 T 26-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 22 76 2.4E-5 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 SUPERFAMILY SSF54292 10 94 3.23E-16 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 SMART SM01092 372 473 1.1E-36 T 26-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 PIRSF PIRSF036557 7 486 6.8E-212 T 26-04-2016 IPR012175 Xanthine dehydrogenase, small subunit, bacteria RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 Gene3D G3DSA:3.30.43.10 202 250 1.1E-21 T 26-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 374 472 2.3E-32 T 26-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RGE_RS19515 f50cb5d9fa6b50265aa5dbd43d63ba9a 493 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 200 364 2.7E-48 T 26-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RGE_RS10875 c8ffabb86d4710d9d80392bcf5ca0625 186 PANTHER PTHR30543:SF6 1 182 1.2E-52 T 26-04-2016 RGE_RS10875 c8ffabb86d4710d9d80392bcf5ca0625 186 Gene3D G3DSA:3.40.50.360 3 183 4.3E-52 T 26-04-2016 IPR029039 Flavoprotein-like domain RGE_RS10875 c8ffabb86d4710d9d80392bcf5ca0625 186 PANTHER PTHR30543 1 182 1.2E-52 T 26-04-2016 RGE_RS10875 c8ffabb86d4710d9d80392bcf5ca0625 186 Pfam PF03358 NADPH-dependent FMN reductase 7 149 6.6E-39 T 26-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RGE_RS10875 c8ffabb86d4710d9d80392bcf5ca0625 186 SUPERFAMILY SSF52218 7 176 1.1E-46 T 26-04-2016 IPR029039 Flavoprotein-like domain RGE_RS11780 2f489c9fea689b604d893a083ffe68ad 881 Pfam PF16313 Met-zincin 479 795 1.2E-75 T 26-04-2016 IPR032534 Domian of unknown function DUF4953 RGE_RS11780 2f489c9fea689b604d893a083ffe68ad 881 SUPERFAMILY SSF55486 486 566 7.11E-25 T 26-04-2016 RGE_RS11780 2f489c9fea689b604d893a083ffe68ad 881 SUPERFAMILY SSF55486 254 417 7.11E-25 T 26-04-2016 RGE_RS11780 2f489c9fea689b604d893a083ffe68ad 881 Pfam PF17148 Domain of unknown function (DUF5117) 121 315 7.3E-23 T 26-04-2016 IPR033413 Domain of unknown function DUF5117 RGE_RS11780 2f489c9fea689b604d893a083ffe68ad 881 PANTHER PTHR38478 1 840 1.0E-126 T 26-04-2016 RGE_RS11780 2f489c9fea689b604d893a083ffe68ad 881 Gene3D G3DSA:3.40.390.10 294 410 2.1E-17 T 26-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RGE_RS11780 2f489c9fea689b604d893a083ffe68ad 881 Gene3D G3DSA:3.40.390.10 480 568 2.1E-17 T 26-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RGE_RS13965 73013bfa96691c4f7c4ae6c3a3e56602 193 TIGRFAM TIGR02175 PorC_KorC: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family 1 181 2.9E-56 T 26-04-2016 IPR011894 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0055114 RGE_RS13965 73013bfa96691c4f7c4ae6c3a3e56602 193 SUPERFAMILY SSF53323 1 186 1.83E-43 T 26-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RGE_RS13965 73013bfa96691c4f7c4ae6c3a3e56602 193 PANTHER PTHR32154:SF2 1 179 2.2E-49 T 26-04-2016 RGE_RS13965 73013bfa96691c4f7c4ae6c3a3e56602 193 PANTHER PTHR32154 1 179 2.2E-49 T 26-04-2016 RGE_RS13965 73013bfa96691c4f7c4ae6c3a3e56602 193 Gene3D G3DSA:3.40.920.10 1 181 9.0E-50 T 26-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RGE_RS13965 73013bfa96691c4f7c4ae6c3a3e56602 193 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 10 180 3.6E-36 T 26-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RGE_RS04345 397be973e3ab8b34ffab74569c5a25c8 116 PIRSF PIRSF029826 1 116 1.2E-42 T 26-04-2016 IPR011394 NTP Pyrophosphohydrolase MazG-related, RS21-C6 RGE_RS04345 397be973e3ab8b34ffab74569c5a25c8 116 Gene3D G3DSA:1.10.287.1080 4 94 3.1E-21 T 26-04-2016 RGE_RS04345 397be973e3ab8b34ffab74569c5a25c8 116 Pfam PF12643 MazG-like family 36 116 1.1E-12 T 26-04-2016 IPR025984 MazG-like domain KEGG: 00240+3.6.1.12 RGE_RS04345 397be973e3ab8b34ffab74569c5a25c8 116 PANTHER PTHR14552 4 116 4.9E-35 T 26-04-2016 RGE_RS04345 397be973e3ab8b34ffab74569c5a25c8 116 SUPERFAMILY SSF101386 4 115 6.69E-37 T 26-04-2016 RGE_RS11115 bc7ec181674ca8099e2ac7c3598cf6a7 157 PANTHER PTHR33164 14 157 9.7E-14 T 26-04-2016 RGE_RS11115 bc7ec181674ca8099e2ac7c3598cf6a7 157 Pfam PF12802 MarR family 37 97 1.8E-11 T 26-04-2016 RGE_RS11115 bc7ec181674ca8099e2ac7c3598cf6a7 157 SUPERFAMILY SSF46785 6 149 1.28E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11115 bc7ec181674ca8099e2ac7c3598cf6a7 157 SMART SM00347 32 133 4.5E-8 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS11115 bc7ec181674ca8099e2ac7c3598cf6a7 157 Gene3D G3DSA:1.10.10.10 2 147 8.7E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07815 aad3257d4d1642f55cf8bd697abbb1a9 354 PANTHER PTHR24220 5 288 6.2E-154 T 26-04-2016 RGE_RS07815 aad3257d4d1642f55cf8bd697abbb1a9 354 Pfam PF08402 TOBE domain 279 345 4.0E-8 T 26-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RGE_RS07815 aad3257d4d1642f55cf8bd697abbb1a9 354 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS07815 aad3257d4d1642f55cf8bd697abbb1a9 354 Gene3D G3DSA:3.40.50.300 2 236 8.3E-79 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07815 aad3257d4d1642f55cf8bd697abbb1a9 354 Gene3D G3DSA:2.40.50.100 239 282 1.7E-7 T 26-04-2016 RGE_RS07815 aad3257d4d1642f55cf8bd697abbb1a9 354 Gene3D G3DSA:2.40.50.100 339 353 1.7E-7 T 26-04-2016 RGE_RS07815 aad3257d4d1642f55cf8bd697abbb1a9 354 SUPERFAMILY SSF52540 4 242 2.3E-85 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07815 aad3257d4d1642f55cf8bd697abbb1a9 354 Gene3D G3DSA:2.40.50.140 283 337 3.4E-8 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS07815 aad3257d4d1642f55cf8bd697abbb1a9 354 PANTHER PTHR24220:SF446 5 288 6.2E-154 T 26-04-2016 RGE_RS07815 aad3257d4d1642f55cf8bd697abbb1a9 354 SMART SM00382 28 219 4.7E-13 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS07815 aad3257d4d1642f55cf8bd697abbb1a9 354 Pfam PF00005 ABC transporter 19 161 2.8E-33 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS07815 aad3257d4d1642f55cf8bd697abbb1a9 354 SUPERFAMILY SSF50331 236 353 9.48E-23 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS09275 c3a0dd79290f689804cba8f997555374 78 Pfam PF03814 Potassium-transporting ATPase A subunit 1 36 1.7E-10 T 26-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RGE_RS18985 62c64e0be75db15c68fb4533d399c510 341 PANTHER PTHR30137 1 330 1.4E-99 T 26-04-2016 RGE_RS18985 62c64e0be75db15c68fb4533d399c510 341 SUPERFAMILY SSF51679 1 329 2.75E-71 T 26-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RGE_RS18985 62c64e0be75db15c68fb4533d399c510 341 Pfam PF00296 Luciferase-like monooxygenase 13 301 5.1E-33 T 26-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RGE_RS18985 62c64e0be75db15c68fb4533d399c510 341 Gene3D G3DSA:3.20.20.30 1 330 1.3E-82 T 26-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RGE_RS18985 62c64e0be75db15c68fb4533d399c510 341 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 3 329 1.7E-110 T 26-04-2016 IPR019949 Luciferase family oxidoreductase, group 1 RGE_RS18985 62c64e0be75db15c68fb4533d399c510 341 PANTHER PTHR30137:SF2 1 330 1.4E-99 T 26-04-2016 RGE_RS09730 792ab1624df63a1fedb962e5be39dd08 309 PANTHER PTHR24567:SF37 94 301 4.8E-43 T 26-04-2016 RGE_RS09730 792ab1624df63a1fedb962e5be39dd08 309 PANTHER PTHR24567 94 301 4.8E-43 T 26-04-2016 RGE_RS14720 95b2c692f467c14195a6ebb39eae17c1 608 PRINTS PR00154 AMP-binding signature 188 199 5.5E-5 T 26-04-2016 IPR020459 AMP-binding RGE_RS14720 95b2c692f467c14195a6ebb39eae17c1 608 PRINTS PR00154 AMP-binding signature 200 208 5.5E-5 T 26-04-2016 IPR020459 AMP-binding RGE_RS14720 95b2c692f467c14195a6ebb39eae17c1 608 PANTHER PTHR24096:SF193 15 608 6.2E-162 T 26-04-2016 RGE_RS14720 95b2c692f467c14195a6ebb39eae17c1 608 Gene3D G3DSA:3.40.50.980 347 410 3.1E-39 T 26-04-2016 RGE_RS14720 95b2c692f467c14195a6ebb39eae17c1 608 Gene3D G3DSA:3.40.50.980 200 291 3.1E-39 T 26-04-2016 RGE_RS14720 95b2c692f467c14195a6ebb39eae17c1 608 Gene3D G3DSA:3.40.50.980 15 199 3.1E-31 T 26-04-2016 RGE_RS14720 95b2c692f467c14195a6ebb39eae17c1 608 SUPERFAMILY SSF56801 350 606 3.14E-116 T 26-04-2016 RGE_RS14720 95b2c692f467c14195a6ebb39eae17c1 608 SUPERFAMILY SSF56801 14 296 3.14E-116 T 26-04-2016 RGE_RS14720 95b2c692f467c14195a6ebb39eae17c1 608 ProSitePatterns PS00455 Putative AMP-binding domain signature. 193 204 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS14720 95b2c692f467c14195a6ebb39eae17c1 608 Pfam PF00501 AMP-binding enzyme 22 478 1.8E-92 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS14720 95b2c692f467c14195a6ebb39eae17c1 608 Gene3D G3DSA:2.30.38.10 411 471 9.6E-17 T 26-04-2016 RGE_RS14720 95b2c692f467c14195a6ebb39eae17c1 608 PANTHER PTHR24096 15 608 6.2E-162 T 26-04-2016 RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 Gene3D G3DSA:1.25.40.10 174 257 9.2E-18 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 PANTHER PTHR10438 203 222 3.4E-35 T 26-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 PANTHER PTHR10438 8 114 3.4E-35 T 26-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 PRINTS PR00421 Thioredoxin family signature 28 36 6.5E-5 T 26-04-2016 RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 PRINTS PR00421 Thioredoxin family signature 76 87 6.5E-5 T 26-04-2016 RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 PRINTS PR00421 Thioredoxin family signature 36 45 6.5E-5 T 26-04-2016 RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 SUPERFAMILY SSF52833 9 114 4.74E-33 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 ProSitePatterns PS00194 Thioredoxin family active site. 29 47 - T 26-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 Gene3D G3DSA:3.40.30.10 9 113 1.1E-29 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 PANTHER PTHR10438:SF281 203 222 3.4E-35 T 26-04-2016 RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 PANTHER PTHR10438:SF281 8 114 3.4E-35 T 26-04-2016 RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 Gene3D G3DSA:1.25.40.10 131 172 1.2E-5 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 Pfam PF14561 Tetratricopeptide repeat 172 257 7.9E-19 T 26-04-2016 RGE_RS00410 e9a741dc4de194641ed5a024eb8b3d03 258 Pfam PF00085 Thioredoxin 10 111 5.0E-24 T 26-04-2016 IPR013766 Thioredoxin domain GO:0045454 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 PANTHER PTHR24423:SF382 49 63 8.8E-170 T 26-04-2016 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 PANTHER PTHR24423:SF382 512 888 8.8E-170 T 26-04-2016 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 PANTHER PTHR24423:SF382 362 493 8.8E-170 T 26-04-2016 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 SMART SM00086 436 478 8.9E-9 T 26-04-2016 IPR001610 PAC motif RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 627 741 1.7E-24 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 PRINTS PR00344 Bacterial sensor protein C-terminal signature 727 740 8.7E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 PRINTS PR00344 Bacterial sensor protein C-terminal signature 686 696 8.7E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 PRINTS PR00344 Bacterial sensor protein C-terminal signature 668 682 8.7E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 PRINTS PR00344 Bacterial sensor protein C-terminal signature 703 721 8.7E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 SMART SM00388 516 581 8.2E-22 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 Gene3D G3DSA:3.30.450.20 373 477 3.8E-30 T 26-04-2016 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 SMART SM00091 364 430 1.1E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 SUPERFAMILY SSF47384 502 582 3.92E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 362 485 3.7E-24 T 26-04-2016 IPR000014 PAS domain RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 SMART SM00448 768 881 1.1E-31 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 Gene3D G3DSA:1.10.287.130 509 577 3.5E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 Gene3D G3DSA:3.40.50.2300 766 889 1.8E-39 T 26-04-2016 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 Pfam PF13426 PAS domain 376 477 8.1E-18 T 26-04-2016 IPR000014 PAS domain RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 Gene3D G3DSA:3.30.450.20 112 184 3.4E-4 T 26-04-2016 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 SMART SM00387 627 743 8.6E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 Gene3D G3DSA:3.30.565.10 582 741 3.6E-43 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 Pfam PF00512 His Kinase A (phospho-acceptor) domain 516 581 9.4E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 SUPERFAMILY SSF52172 765 887 1.21E-37 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 SUPERFAMILY SSF55785 371 478 1.03E-30 T 26-04-2016 IPR000014 PAS domain RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 Pfam PF00072 Response regulator receiver domain 770 879 1.5E-24 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 SUPERFAMILY SSF55874 570 739 2.75E-42 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 PANTHER PTHR24423 49 63 8.8E-170 T 26-04-2016 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 PANTHER PTHR24423 512 888 8.8E-170 T 26-04-2016 RGE_RS14140 9660933e04ad0775d5d71efd2fdb947a 893 PANTHER PTHR24423 362 493 8.8E-170 T 26-04-2016 RGE_RS12730 2a15479982e1a9617f63269eeb34cf73 235 PANTHER PTHR11922:SF11 17 184 1.6E-46 T 26-04-2016 RGE_RS12730 2a15479982e1a9617f63269eeb34cf73 235 PANTHER PTHR11922 17 184 1.6E-46 T 26-04-2016 RGE_RS12730 2a15479982e1a9617f63269eeb34cf73 235 Gene3D G3DSA:3.40.50.880 2 232 1.1E-43 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS12730 2a15479982e1a9617f63269eeb34cf73 235 SUPERFAMILY SSF52317 5 232 6.27E-32 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS12730 2a15479982e1a9617f63269eeb34cf73 235 Pfam PF00117 Glutamine amidotransferase class-I 68 177 1.7E-8 T 26-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RGE_RS01590 6aba28d0951ff49a5da0224fdac0b0c9 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 26-04-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 RGE_RS01590 6aba28d0951ff49a5da0224fdac0b0c9 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.261 T 26-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RGE_RS01590 6aba28d0951ff49a5da0224fdac0b0c9 156 SUPERFAMILY SSF47973 2 149 4.71E-60 T 26-04-2016 IPR023798 Ribosomal protein S7 domain RGE_RS01590 6aba28d0951ff49a5da0224fdac0b0c9 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 2.5E-65 T 26-04-2016 IPR023798 Ribosomal protein S7 domain RGE_RS01590 6aba28d0951ff49a5da0224fdac0b0c9 156 Gene3D G3DSA:1.10.455.10 7 156 5.4E-63 T 26-04-2016 IPR023798 Ribosomal protein S7 domain RGE_RS01590 6aba28d0951ff49a5da0224fdac0b0c9 156 PANTHER PTHR11205 1 156 4.5E-83 T 26-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 RGE_RS01590 6aba28d0951ff49a5da0224fdac0b0c9 156 PIRSF PIRSF002122 3 156 6.1E-57 T 26-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 RGE_RS01590 6aba28d0951ff49a5da0224fdac0b0c9 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 7.0E-65 T 26-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Pfam PF00512 His Kinase A (phospho-acceptor) domain 745 813 3.8E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SUPERFAMILY SSF55785 331 456 1.19E-28 T 26-04-2016 IPR000014 PAS domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Pfam PF00072 Response regulator receiver domain 982 1094 5.4E-20 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SMART SM00091 611 677 4.8E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SMART SM00091 346 412 7.3E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SMART SM00091 478 544 0.0067 T 26-04-2016 IPR000014 PAS domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SMART SM00091 219 287 0.04 T 26-04-2016 IPR000014 PAS domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Gene3D G3DSA:3.40.50.2300 978 1099 6.0E-33 T 26-04-2016 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Gene3D G3DSA:1.10.287.130 738 808 8.1E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 PRINTS PR00344 Bacterial sensor protein C-terminal signature 914 924 2.4E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 PRINTS PR00344 Bacterial sensor protein C-terminal signature 930 948 2.4E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 PRINTS PR00344 Bacterial sensor protein C-terminal signature 896 910 2.4E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 PRINTS PR00344 Bacterial sensor protein C-terminal signature 954 967 2.4E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 PANTHER PTHR24423 595 1099 5.1E-157 T 26-04-2016 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 PANTHER PTHR24423 322 454 5.1E-157 T 26-04-2016 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SMART SM00388 745 813 2.0E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Gene3D G3DSA:3.30.450.20 601 723 1.0E-28 T 26-04-2016 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SMART SM00448 980 1094 5.6E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Pfam PF12860 PAS fold 225 338 1.5E-26 T 26-04-2016 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Pfam PF12860 PAS fold 484 604 1.1E-19 T 26-04-2016 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SUPERFAMILY SSF55785 596 723 2.44E-26 T 26-04-2016 IPR000014 PAS domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Pfam PF08448 PAS fold 352 461 1.7E-17 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Pfam PF08447 PAS fold 635 716 7.5E-12 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SUPERFAMILY SSF52172 979 1099 5.27E-32 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Gene3D G3DSA:3.30.565.10 815 970 7.6E-39 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Gene3D G3DSA:3.30.450.20 211 332 3.4E-14 T 26-04-2016 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Gene3D G3DSA:3.30.450.20 470 598 4.2E-13 T 26-04-2016 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SUPERFAMILY SSF55874 802 967 5.24E-39 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 343 464 6.6E-19 T 26-04-2016 IPR000014 PAS domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 607 732 3.9E-12 T 26-04-2016 IPR000014 PAS domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SMART SM00086 683 725 4.3E-6 T 26-04-2016 IPR001610 PAC motif RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SMART SM00086 417 459 7.3E-7 T 26-04-2016 IPR001610 PAC motif RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SMART SM00387 859 970 2.4E-30 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SUPERFAMILY SSF55785 467 584 1.08E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SUPERFAMILY SSF55785 207 332 2.62E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 860 968 5.3E-21 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 Gene3D G3DSA:3.30.450.20 333 456 3.9E-30 T 26-04-2016 RGE_RS19245 920ece919d6222bc1d44d7227aa36132 1101 SUPERFAMILY SSF47384 731 813 1.92E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 SUPERFAMILY SSF47384 427 512 4.12E-9 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 558 669 3.0E-19 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 Gene3D G3DSA:1.10.287.130 434 509 7.1E-6 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 647 3.0E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 614 3.0E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 PRINTS PR00344 Bacterial sensor protein C-terminal signature 618 628 3.0E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 667 3.0E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 PANTHER PTHR24423 12 21 8.4E-72 T 26-04-2016 RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 PANTHER PTHR24423 281 674 8.4E-72 T 26-04-2016 RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 SMART SM00091 297 361 1.9E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 Gene3D G3DSA:3.30.565.10 518 668 4.8E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 SMART SM00387 557 670 1.4E-31 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 297 421 1.6E-16 T 26-04-2016 IPR000014 PAS domain RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 Pfam PF00512 His Kinase A (phospho-acceptor) domain 440 511 1.3E-7 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 SUPERFAMILY SSF55874 510 672 1.12E-34 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 SMART SM00388 438 515 2.5E-7 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 Pfam PF00989 PAS fold 298 413 9.8E-9 T 26-04-2016 IPR013767 PAS fold GO:0006355 RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 SUPERFAMILY SSF55785 283 414 7.25E-18 T 26-04-2016 IPR000014 PAS domain RGE_RS22110 5add38484182344e9a51250d3de8f4f7 685 Gene3D G3DSA:3.30.450.20 282 414 1.2E-15 T 26-04-2016 RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 SMART SM00400 33 87 1.2E-36 T 26-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 Gene3D G3DSA:3.90.980.10 119 246 1.1E-37 T 26-04-2016 IPR013264 DNA primase, catalytic core, N-terminal RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 Pfam PF01807 CHC2 zinc finger 5 97 2.5E-37 T 26-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 Gene3D G3DSA:3.40.1360.10 247 372 1.6E-44 T 26-04-2016 RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 Hamap MF_00974 DNA primase [dnaG]. 1 585 26.99 T 26-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 SMART SM00493 265 336 3.1E-15 T 26-04-2016 IPR006171 Toprim domain RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 Pfam PF13662 Toprim domain 267 337 1.7E-16 T 26-04-2016 IPR006171 Toprim domain RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 Gene3D G3DSA:1.20.50.20 374 431 2.7E-15 T 26-04-2016 RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 SUPERFAMILY SSF56731 118 428 3.01E-98 T 26-04-2016 RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 Gene3D G3DSA:3.90.580.10 2 98 4.6E-39 T 26-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 TIGRFAM TIGR01391 dnaG: DNA primase 2 423 3.9E-131 T 26-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 Pfam PF10410 DnaB-helicase binding domain of primase 378 430 4.5E-10 T 26-04-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 PANTHER PTHR30313 1 587 8.3E-134 T 26-04-2016 RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 Pfam PF08275 DNA primase catalytic core, N-terminal domain 127 257 7.0E-33 T 26-04-2016 IPR013264 DNA primase, catalytic core, N-terminal RGE_RS13145 232495550a3f3d5099e6521eeeebbde6 587 SUPERFAMILY SSF57783 2 98 7.99E-35 T 26-04-2016 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 292 6.2E-103 T 26-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 278 291 - T 26-04-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 292 35.439 T 26-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 PANTHER PTHR11693 1 292 1.7E-115 T 26-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 Pfam PF00231 ATP synthase 5 291 2.1E-90 T 26-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 Gene3D G3DSA:3.40.1380.10 64 192 2.3E-39 T 26-04-2016 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 Gene3D G3DSA:1.10.287.80 207 240 1.1E-39 T 26-04-2016 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 Gene3D G3DSA:1.10.287.80 19 60 1.1E-39 T 26-04-2016 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 PRINTS PR00126 ATP synthase gamma subunit signature 270 291 2.5E-37 T 26-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 PRINTS PR00126 ATP synthase gamma subunit signature 239 258 2.5E-37 T 26-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 PRINTS PR00126 ATP synthase gamma subunit signature 74 93 2.5E-37 T 26-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 PRINTS PR00126 ATP synthase gamma subunit signature 167 184 2.5E-37 T 26-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 Gene3D G3DSA:1.10.287.80 241 287 4.5E-29 T 26-04-2016 RGE_RS01095 3d74fcba71c493e49fd271676fcd8e3a 292 SUPERFAMILY SSF52943 5 292 1.44E-92 T 26-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain RGE_RS16900 a6d8887d9477a04e40cc8235c8954029 1161 SUPERFAMILY SSF54001 8 337 7.01E-71 T 26-04-2016 RGE_RS16900 a6d8887d9477a04e40cc8235c8954029 1161 Pfam PF09899 Putative amidoligase enzyme (DUF2126) 276 1159 0.0 T 26-04-2016 IPR018667 Domain of unknown function DUF2126 RGE_RS16900 a6d8887d9477a04e40cc8235c8954029 1161 PANTHER PTHR33490:SF1 2 509 3.2E-240 T 26-04-2016 RGE_RS16900 a6d8887d9477a04e40cc8235c8954029 1161 SMART SM00460 172 248 6.8E-18 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS16900 a6d8887d9477a04e40cc8235c8954029 1161 Gene3D G3DSA:3.90.260.10 176 249 9.1E-8 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS16900 a6d8887d9477a04e40cc8235c8954029 1161 PANTHER PTHR33490 2 509 3.2E-240 T 26-04-2016 RGE_RS16900 a6d8887d9477a04e40cc8235c8954029 1161 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 6 84 1.4E-27 T 26-04-2016 IPR013589 Bacterial transglutaminase-like, N-terminal RGE_RS16900 a6d8887d9477a04e40cc8235c8954029 1161 Pfam PF01841 Transglutaminase-like superfamily 143 246 6.4E-17 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 335 458 1.1E-24 T 26-04-2016 IPR000014 PAS domain RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 SMART SM00091 336 403 2.1E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 SMART SM00091 464 535 16.0 T 26-04-2016 IPR000014 PAS domain RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 Gene3D G3DSA:3.30.565.10 673 834 2.5E-34 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 Pfam PF00989 PAS fold 337 443 8.1E-17 T 26-04-2016 IPR013767 PAS fold GO:0006355 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 PRINTS PR00344 Bacterial sensor protein C-terminal signature 792 810 1.7E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 PRINTS PR00344 Bacterial sensor protein C-terminal signature 781 791 1.7E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 PRINTS PR00344 Bacterial sensor protein C-terminal signature 820 833 1.7E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 PRINTS PR00344 Bacterial sensor protein C-terminal signature 763 777 1.7E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 Gene3D G3DSA:3.30.450.20 324 449 7.4E-21 T 26-04-2016 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 SUPERFAMILY SSF55874 659 834 1.03E-31 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 Gene3D G3DSA:1.10.287.130 603 667 1.3E-5 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 PANTHER PTHR24423 582 834 2.1E-67 T 26-04-2016 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 PANTHER PTHR24423 12 30 2.1E-67 T 26-04-2016 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 PANTHER PTHR24423 320 450 2.1E-67 T 26-04-2016 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 Pfam PF00512 His Kinase A (phospho-acceptor) domain 604 670 5.6E-9 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 SMART SM00387 715 836 6.6E-26 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 SUPERFAMILY SSF55785 449 579 1.61E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 716 835 1.2E-14 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 Gene3D G3DSA:3.30.450.20 450 579 8.0E-6 T 26-04-2016 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 PANTHER PTHR24423:SF505 582 834 2.1E-67 T 26-04-2016 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 PANTHER PTHR24423:SF505 12 30 2.1E-67 T 26-04-2016 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 PANTHER PTHR24423:SF505 320 450 2.1E-67 T 26-04-2016 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 SUPERFAMILY SSF55785 323 450 1.92E-22 T 26-04-2016 IPR000014 PAS domain RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 SMART SM00388 603 673 1.1E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11520 b2ea8524730c515871e7f66efdc7493c 862 SUPERFAMILY SSF47384 593 671 8.63E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS21090 a1a1a23b693bdb25f9ac239cae020d3f 370 SUPERFAMILY SSF53822 25 369 7.28E-69 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS21090 a1a1a23b693bdb25f9ac239cae020d3f 370 Pfam PF13458 Periplasmic binding protein 24 354 3.3E-59 T 26-04-2016 IPR028081 Leucine-binding protein domain RGE_RS21090 a1a1a23b693bdb25f9ac239cae020d3f 370 Gene3D G3DSA:3.40.50.2300 24 222 2.7E-46 T 26-04-2016 RGE_RS21090 a1a1a23b693bdb25f9ac239cae020d3f 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 66 84 5.5E-5 T 26-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RGE_RS21090 a1a1a23b693bdb25f9ac239cae020d3f 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 25 41 5.5E-5 T 26-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RGE_RS21090 a1a1a23b693bdb25f9ac239cae020d3f 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 47 63 5.5E-5 T 26-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RGE_RS21090 a1a1a23b693bdb25f9ac239cae020d3f 370 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 253 271 5.5E-5 T 26-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RGE_RS21090 a1a1a23b693bdb25f9ac239cae020d3f 370 PANTHER PTHR30483:SF11 24 368 3.1E-50 T 26-04-2016 RGE_RS21090 a1a1a23b693bdb25f9ac239cae020d3f 370 PANTHER PTHR30483 24 368 3.1E-50 T 26-04-2016 RGE_RS20760 e9bda9f7d6a4ce9b718e4ccc9d6996a8 183 SUPERFAMILY SSF103190 81 181 8.63E-7 T 26-04-2016 IPR029151 Periplasmic sensor domain-like RGE_RS20760 e9bda9f7d6a4ce9b718e4ccc9d6996a8 183 Gene3D G3DSA:3.30.450.20 90 180 6.2E-10 T 26-04-2016 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 ProSitePatterns PS01242 Zinc finger FPG-type signature. 248 272 - T 26-04-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 PANTHER PTHR22993 1 274 5.7E-94 T 26-04-2016 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 SUPERFAMILY SSF57716 221 272 3.99E-16 T 26-04-2016 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 273 37.484 T 26-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 Gene3D G3DSA:3.20.190.10 2 131 7.9E-28 T 26-04-2016 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 SMART SM00898 2 116 3.0E-36 T 26-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 Pfam PF06827 Zinc finger found in FPG and IleRS 245 272 4.4E-10 T 26-04-2016 IPR010663 Zinc finger, FPG/IleRS-type RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 SUPERFAMILY SSF81624 2 140 1.22E-27 T 26-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 115 2.2E-24 T 26-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 SUPERFAMILY SSF46946 134 226 3.68E-25 T 26-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 Gene3D G3DSA:1.10.8.50 133 273 1.1E-46 T 26-04-2016 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 272 7.3E-71 T 26-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 SMART SM01232 133 225 1.9E-39 T 26-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 PANTHER PTHR22993:SF15 1 274 5.7E-94 T 26-04-2016 RGE_RS04295 d03ef5841296cf31b1b50b824c7f2eee 274 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 133 222 1.9E-19 T 26-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RGE_RS06725 bc84f23449b8858ecb3bf32b82cb6934 105 Pfam PF12836 Helix-hairpin-helix motif 22 72 5.6E-11 T 26-04-2016 RGE_RS06725 bc84f23449b8858ecb3bf32b82cb6934 105 SUPERFAMILY SSF160975 27 71 1.29E-13 T 26-04-2016 RGE_RS06725 bc84f23449b8858ecb3bf32b82cb6934 105 Gene3D G3DSA:1.10.150.280 19 81 1.2E-15 T 26-04-2016 RGE_RS22250 bf9feb94d1c65a12556361ed6fb5e59c 322 Gene3D G3DSA:3.40.50.2300 125 281 7.0E-54 T 26-04-2016 RGE_RS22250 bf9feb94d1c65a12556361ed6fb5e59c 322 SUPERFAMILY SSF53822 33 262 3.83E-17 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS22250 bf9feb94d1c65a12556361ed6fb5e59c 322 PANTHER PTHR34296 24 312 1.5E-104 T 26-04-2016 RGE_RS22250 bf9feb94d1c65a12556361ed6fb5e59c 322 Pfam PF02608 Basic membrane protein 24 281 8.8E-58 T 26-04-2016 IPR003760 Basic membrane lipoprotein GO:0005886 RGE_RS22250 bf9feb94d1c65a12556361ed6fb5e59c 322 PANTHER PTHR34296:SF2 24 312 1.5E-104 T 26-04-2016 RGE_RS15785 14e9cd55279bcfc9f84fc1634b5084f2 285 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 112 280 4.2E-47 T 26-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RGE_RS15785 14e9cd55279bcfc9f84fc1634b5084f2 285 Gene3D G3DSA:3.90.1170.20 7 136 1.1E-40 T 26-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 RGE_RS15785 14e9cd55279bcfc9f84fc1634b5084f2 285 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 13 280 5.5E-79 T 26-04-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|UniPathway: UPA00253 RGE_RS15785 14e9cd55279bcfc9f84fc1634b5084f2 285 Gene3D G3DSA:3.20.20.70 137 270 1.2E-50 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS15785 14e9cd55279bcfc9f84fc1634b5084f2 285 SUPERFAMILY SSF54675 5 109 3.14E-29 T 26-04-2016 RGE_RS15785 14e9cd55279bcfc9f84fc1634b5084f2 285 PANTHER PTHR32179 10 285 1.5E-100 T 26-04-2016 RGE_RS15785 14e9cd55279bcfc9f84fc1634b5084f2 285 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 22 109 4.1E-22 T 26-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 RGE_RS15785 14e9cd55279bcfc9f84fc1634b5084f2 285 SUPERFAMILY SSF51690 112 280 1.02E-48 T 26-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RGE_RS15785 14e9cd55279bcfc9f84fc1634b5084f2 285 PIRSF PIRSF006250 3 284 4.5E-82 T 26-04-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD RGE_RS01365 3f6be1db2b1eff12ce5a2e549a91821e 269 PANTHER PTHR13622:SF8 60 266 1.0E-27 T 26-04-2016 RGE_RS01365 3f6be1db2b1eff12ce5a2e549a91821e 269 Pfam PF15916 Domain of unknown function (DUF4743) 8 99 7.0E-11 T 26-04-2016 IPR031804 Domain of unknown function DUF4743 RGE_RS01365 3f6be1db2b1eff12ce5a2e549a91821e 269 SUPERFAMILY SSF55811 89 245 2.03E-23 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS01365 3f6be1db2b1eff12ce5a2e549a91821e 269 PANTHER PTHR13622 60 266 1.0E-27 T 26-04-2016 RGE_RS01365 3f6be1db2b1eff12ce5a2e549a91821e 269 Gene3D G3DSA:3.90.79.10 68 249 2.2E-41 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS01365 3f6be1db2b1eff12ce5a2e549a91821e 269 Pfam PF00293 NUDIX domain 110 228 2.2E-14 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS09315 2bff55aa22b9b4140ec69e4a90de1c0f 194 Pfam PF13649 Methyltransferase domain 23 114 2.2E-14 T 26-04-2016 RGE_RS09315 2bff55aa22b9b4140ec69e4a90de1c0f 194 SUPERFAMILY SSF53335 4 169 5.28E-26 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS09315 2bff55aa22b9b4140ec69e4a90de1c0f 194 Gene3D G3DSA:3.40.50.150 8 125 1.1E-22 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 PANTHER PTHR11751 150 495 4.0E-146 T 26-04-2016 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 PANTHER PTHR11751 523 531 4.0E-146 T 26-04-2016 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 PANTHER PTHR11751 551 671 4.0E-146 T 26-04-2016 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 Gene3D G3DSA:3.90.100.10 628 752 4.0E-34 T 26-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 392 406 - T 26-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 Gene3D G3DSA:3.40.640.10 149 455 1.4E-110 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 21 143 1.1E-39 T 26-04-2016 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 SUPERFAMILY SSF55904 605 750 1.06E-42 T 26-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 611 735 2.7E-45 T 26-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 Gene3D G3DSA:3.90.1150.10 459 627 7.3E-69 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 149 584 1.4E-147 T 26-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 PANTHER PTHR11751:SF406 150 495 4.0E-146 T 26-04-2016 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 PANTHER PTHR11751:SF406 523 531 4.0E-146 T 26-04-2016 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 PANTHER PTHR11751:SF406 551 671 4.0E-146 T 26-04-2016 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 PIRSF PIRSF009393 2 753 4.7E-276 T 26-04-2016 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 RGE_RS13785 811257e68611c9747c6e872d62dc0f8b 753 SUPERFAMILY SSF53383 149 604 1.3E-115 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS13225 106c7e6b084c1d7819d92f7b48480fcc 703 PANTHER PTHR11819:SF159 373 451 3.4E-170 T 26-04-2016 RGE_RS13225 106c7e6b084c1d7819d92f7b48480fcc 703 PANTHER PTHR11819:SF159 49 275 3.4E-170 T 26-04-2016 RGE_RS13225 106c7e6b084c1d7819d92f7b48480fcc 703 PANTHER PTHR11819:SF159 481 701 3.4E-170 T 26-04-2016 RGE_RS13225 106c7e6b084c1d7819d92f7b48480fcc 703 PANTHER PTHR11819 373 451 3.4E-170 T 26-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RGE_RS13225 106c7e6b084c1d7819d92f7b48480fcc 703 PANTHER PTHR11819 49 275 3.4E-170 T 26-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RGE_RS13225 106c7e6b084c1d7819d92f7b48480fcc 703 PANTHER PTHR11819 481 701 3.4E-170 T 26-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RGE_RS13225 106c7e6b084c1d7819d92f7b48480fcc 703 ProSitePatterns PS00018 EF-hand calcium-binding domain. 481 493 - T 26-04-2016 IPR018247 EF-Hand 1, calcium-binding site RGE_RS13225 106c7e6b084c1d7819d92f7b48480fcc 703 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 54 699 8.2E-222 T 26-04-2016 IPR019899 Sodium/solute symporter, VC2705 subfamily RGE_RS13225 106c7e6b084c1d7819d92f7b48480fcc 703 Pfam PF00474 Sodium:solute symporter family 513 625 3.7E-17 T 26-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RGE_RS13225 106c7e6b084c1d7819d92f7b48480fcc 703 Pfam PF00474 Sodium:solute symporter family 78 235 9.7E-30 T 26-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RGE_RS09235 7d263647138a43a80b4215457470d709 310 PANTHER PTHR30367 17 295 7.5E-95 T 26-04-2016 RGE_RS09235 7d263647138a43a80b4215457470d709 310 Gene3D G3DSA:2.40.50.100 50 79 1.4E-16 T 26-04-2016 RGE_RS09235 7d263647138a43a80b4215457470d709 310 Gene3D G3DSA:2.40.50.100 160 189 1.4E-16 T 26-04-2016 RGE_RS09235 7d263647138a43a80b4215457470d709 310 Pfam PF13533 Biotin-lipoyl like 51 98 2.1E-17 T 26-04-2016 RGE_RS09235 7d263647138a43a80b4215457470d709 310 Pfam PF13437 HlyD family secretion protein 158 243 2.2E-7 T 26-04-2016 RGE_RS09235 7d263647138a43a80b4215457470d709 310 SUPERFAMILY SSF111369 48 185 4.71E-20 T 26-04-2016 RGE_RS09235 7d263647138a43a80b4215457470d709 310 PANTHER PTHR30367:SF5 17 295 7.5E-95 T 26-04-2016 RGE_RS09235 7d263647138a43a80b4215457470d709 310 Gene3D G3DSA:1.20.1600.10 80 159 2.4E-5 T 26-04-2016 RGE_RS13280 680ff08580b9431b98c826768a96ed95 456 SUPERFAMILY SSF50156 84 189 2.76E-5 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS13280 680ff08580b9431b98c826768a96ed95 456 Pfam PF13180 PDZ domain 225 293 8.2E-7 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS13280 680ff08580b9431b98c826768a96ed95 456 SUPERFAMILY SSF50156 224 293 6.05E-11 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS13280 680ff08580b9431b98c826768a96ed95 456 Pfam PF02163 Peptidase family M50 7 439 2.2E-69 T 26-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 RGE_RS13280 680ff08580b9431b98c826768a96ed95 456 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 453 2.6E-94 T 26-04-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 RGE_RS13280 680ff08580b9431b98c826768a96ed95 456 Gene3D G3DSA:2.30.42.10 95 190 6.6E-7 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS13280 680ff08580b9431b98c826768a96ed95 456 PANTHER PTHR22939:SF78 220 454 2.1E-60 T 26-04-2016 RGE_RS13280 680ff08580b9431b98c826768a96ed95 456 PANTHER PTHR22939:SF78 68 89 2.1E-60 T 26-04-2016 RGE_RS13280 680ff08580b9431b98c826768a96ed95 456 Gene3D G3DSA:2.30.42.10 208 302 1.2E-13 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS13280 680ff08580b9431b98c826768a96ed95 456 PANTHER PTHR22939 220 454 2.1E-60 T 26-04-2016 RGE_RS13280 680ff08580b9431b98c826768a96ed95 456 PANTHER PTHR22939 68 89 2.1E-60 T 26-04-2016 RGE_RS20020 3cd1e841ca4dfb76793d1cc0bba0b0c2 234 SMART SM00358 155 223 1.7E-17 T 26-04-2016 IPR014720 Double-stranded RNA-binding domain RGE_RS20020 3cd1e841ca4dfb76793d1cc0bba0b0c2 234 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 8 220 4.4E-68 T 26-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 RGE_RS20020 3cd1e841ca4dfb76793d1cc0bba0b0c2 234 PANTHER PTHR11207 6 228 7.0E-73 T 26-04-2016 RGE_RS20020 3cd1e841ca4dfb76793d1cc0bba0b0c2 234 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 26-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RGE_RS20020 3cd1e841ca4dfb76793d1cc0bba0b0c2 234 SMART SM00535 20 148 2.5E-43 T 26-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RGE_RS20020 3cd1e841ca4dfb76793d1cc0bba0b0c2 234 Gene3D G3DSA:1.10.1520.10 6 144 4.0E-44 T 26-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RGE_RS20020 3cd1e841ca4dfb76793d1cc0bba0b0c2 234 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 28.609 T 26-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 RGE_RS20020 3cd1e841ca4dfb76793d1cc0bba0b0c2 234 Pfam PF00035 Double-stranded RNA binding motif 155 220 6.7E-9 T 26-04-2016 IPR014720 Double-stranded RNA-binding domain RGE_RS20020 3cd1e841ca4dfb76793d1cc0bba0b0c2 234 Gene3D G3DSA:3.30.160.20 153 223 1.4E-22 T 26-04-2016 IPR014720 Double-stranded RNA-binding domain RGE_RS20020 3cd1e841ca4dfb76793d1cc0bba0b0c2 234 SUPERFAMILY SSF54768 108 223 3.61E-26 T 26-04-2016 RGE_RS20020 3cd1e841ca4dfb76793d1cc0bba0b0c2 234 SUPERFAMILY SSF69065 4 152 2.44E-45 T 26-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RGE_RS20020 3cd1e841ca4dfb76793d1cc0bba0b0c2 234 Pfam PF14622 Ribonuclease-III-like 21 137 5.6E-34 T 26-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RGE_RS22210 60e699a747721526a93e815ea4bf95d5 210 Pfam PF14681 Uracil phosphoribosyltransferase 9 209 5.4E-71 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS22210 60e699a747721526a93e815ea4bf95d5 210 SUPERFAMILY SSF53271 5 208 7.34E-67 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS22210 60e699a747721526a93e815ea4bf95d5 210 PANTHER PTHR10285 10 199 6.7E-86 T 26-04-2016 RGE_RS22210 60e699a747721526a93e815ea4bf95d5 210 Gene3D G3DSA:3.40.50.2020 5 210 1.6E-77 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS22210 60e699a747721526a93e815ea4bf95d5 210 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 5 210 2.6E-81 T 26-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 RGE_RS22210 60e699a747721526a93e815ea4bf95d5 210 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 4 210 43.46 T 26-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 RGE_RS02870 9cdcf78dfd897733722e4ec410c339ee 294 PANTHER PTHR30419:SF8 1 289 2.8E-98 T 26-04-2016 RGE_RS02870 9cdcf78dfd897733722e4ec410c339ee 294 SUPERFAMILY SSF53850 92 293 4.07E-39 T 26-04-2016 RGE_RS02870 9cdcf78dfd897733722e4ec410c339ee 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.8E-7 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS02870 9cdcf78dfd897733722e4ec410c339ee 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.8E-7 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS02870 9cdcf78dfd897733722e4ec410c339ee 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.8E-7 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS02870 9cdcf78dfd897733722e4ec410c339ee 294 Gene3D G3DSA:3.40.190.10 92 170 3.1E-13 T 26-04-2016 RGE_RS02870 9cdcf78dfd897733722e4ec410c339ee 294 SUPERFAMILY SSF46785 3 113 1.24E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02870 9cdcf78dfd897733722e4ec410c339ee 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 7.7E-19 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS02870 9cdcf78dfd897733722e4ec410c339ee 294 Pfam PF03466 LysR substrate binding domain 89 292 5.9E-45 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS02870 9cdcf78dfd897733722e4ec410c339ee 294 Gene3D G3DSA:1.10.10.10 4 88 4.2E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02870 9cdcf78dfd897733722e4ec410c339ee 294 PANTHER PTHR30419 1 289 2.8E-98 T 26-04-2016 RGE_RS02870 9cdcf78dfd897733722e4ec410c339ee 294 Gene3D G3DSA:3.40.190.10 171 267 5.8E-27 T 26-04-2016 RGE_RS01200 b4fbcfcd9f2a642bcfe5ca0cca3e3812 442 Pfam PF00464 Serine hydroxymethyltransferase 40 406 1.3E-44 T 26-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RGE_RS01200 b4fbcfcd9f2a642bcfe5ca0cca3e3812 442 Gene3D G3DSA:3.90.1150.10 293 435 1.7E-19 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS01200 b4fbcfcd9f2a642bcfe5ca0cca3e3812 442 SUPERFAMILY SSF53383 40 439 3.86E-95 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS01200 b4fbcfcd9f2a642bcfe5ca0cca3e3812 442 Gene3D G3DSA:3.40.640.10 59 292 1.2E-60 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS01200 b4fbcfcd9f2a642bcfe5ca0cca3e3812 442 PANTHER PTHR11680:SF0 79 439 1.5E-56 T 26-04-2016 RGE_RS01200 b4fbcfcd9f2a642bcfe5ca0cca3e3812 442 PIRSF PIRSF000412 9 439 7.7E-104 T 26-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RGE_RS01200 b4fbcfcd9f2a642bcfe5ca0cca3e3812 442 PANTHER PTHR11680 79 439 1.5E-56 T 26-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RGE_RS03180 0dbe7987fffb3f65979a1500793f0873 121 Pfam PF07883 Cupin domain 37 106 5.9E-11 T 26-04-2016 IPR013096 Cupin 2, conserved barrel RGE_RS03180 0dbe7987fffb3f65979a1500793f0873 121 Gene3D G3DSA:2.60.120.10 14 109 1.7E-18 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS03180 0dbe7987fffb3f65979a1500793f0873 121 SUPERFAMILY SSF51182 14 110 4.34E-20 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS11725 b82ef682a7b1e2c55d75d1529d8690c2 398 Gene3D G3DSA:3.90.1150.10 263 393 8.2E-24 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS11725 b82ef682a7b1e2c55d75d1529d8690c2 398 PANTHER PTHR11751:SF354 12 395 5.9E-118 T 26-04-2016 RGE_RS11725 b82ef682a7b1e2c55d75d1529d8690c2 398 Gene3D G3DSA:3.40.640.10 45 262 2.8E-58 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS11725 b82ef682a7b1e2c55d75d1529d8690c2 398 PANTHER PTHR11751 12 395 5.9E-118 T 26-04-2016 RGE_RS11725 b82ef682a7b1e2c55d75d1529d8690c2 398 SUPERFAMILY SSF53383 2 391 4.54E-85 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS11725 b82ef682a7b1e2c55d75d1529d8690c2 398 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 1 391 7.7E-179 T 26-04-2016 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 RGE_RS11725 b82ef682a7b1e2c55d75d1529d8690c2 398 Pfam PF00155 Aminotransferase class I and II 32 389 2.7E-43 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS06170 103609a865287db373f587561f0450e2 462 Gene3D G3DSA:1.10.1160.10 237 318 8.1E-32 T 26-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 RGE_RS06170 103609a865287db373f587561f0450e2 462 Gene3D G3DSA:3.40.50.620 185 234 8.2E-49 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS06170 103609a865287db373f587561f0450e2 462 Gene3D G3DSA:3.40.50.620 3 67 8.2E-49 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS06170 103609a865287db373f587561f0450e2 462 Gene3D G3DSA:1.10.10.350 370 461 3.4E-17 T 26-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RGE_RS06170 103609a865287db373f587561f0450e2 462 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 1.7E-25 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS06170 103609a865287db373f587561f0450e2 462 PRINTS PR00987 Glutamyl-tRNA synthetase signature 199 207 1.7E-25 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS06170 103609a865287db373f587561f0450e2 462 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 1.7E-25 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS06170 103609a865287db373f587561f0450e2 462 PRINTS PR00987 Glutamyl-tRNA synthetase signature 183 193 1.7E-25 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS06170 103609a865287db373f587561f0450e2 462 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 1.7E-25 T 26-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS06170 103609a865287db373f587561f0450e2 462 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 26-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS06170 103609a865287db373f587561f0450e2 462 SUPERFAMILY SSF48163 303 460 9.68E-38 T 26-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RGE_RS06170 103609a865287db373f587561f0450e2 462 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 460 8.8E-162 T 26-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RGE_RS06170 103609a865287db373f587561f0450e2 462 Gene3D G3DSA:3.90.800.10 68 184 8.4E-37 T 26-04-2016 RGE_RS06170 103609a865287db373f587561f0450e2 462 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 3 462 31.382 T 26-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RGE_RS06170 103609a865287db373f587561f0450e2 462 PANTHER PTHR11451:SF41 2 372 4.1E-94 T 26-04-2016 RGE_RS06170 103609a865287db373f587561f0450e2 462 PANTHER PTHR11451 2 372 4.1E-94 T 26-04-2016 RGE_RS06170 103609a865287db373f587561f0450e2 462 SUPERFAMILY SSF52374 3 300 3.18E-108 T 26-04-2016 RGE_RS06170 103609a865287db373f587561f0450e2 462 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 309 2.0E-103 T 26-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 190 2.1E-50 T 26-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 SUPERFAMILY SSF46929 147 191 2.88E-9 T 26-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 SMART SM00278 108 127 0.0073 T 26-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 SMART SM00278 73 92 3.8 T 26-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 Gene3D G3DSA:1.10.150.20 67 132 2.8E-28 T 26-04-2016 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 Pfam PF14520 Helix-hairpin-helix domain 72 129 3.0E-18 T 26-04-2016 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 SUPERFAMILY SSF47781 65 133 2.03E-21 T 26-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 Pfam PF07499 RuvA, C-terminal domain 147 190 4.9E-13 T 26-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 Pfam PF01330 RuvA N terminal domain 1 62 1.3E-20 T 26-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 191 30.749 T 26-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 PANTHER PTHR33796 2 192 9.0E-70 T 26-04-2016 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 SUPERFAMILY SSF50249 1 63 6.85E-18 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 Gene3D G3DSA:1.10.8.10 146 190 3.8E-8 T 26-04-2016 RGE_RS21590 76903bfdbf9dcbd8d5f9af1e310b5110 192 Gene3D G3DSA:2.40.50.140 1 65 5.2E-27 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS00750 50d71bb716b08d144608a7b8756baf03 175 Gene3D G3DSA:1.10.760.10 82 157 5.1E-31 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS00750 50d71bb716b08d144608a7b8756baf03 175 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 81 155 9.6E-16 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS00750 50d71bb716b08d144608a7b8756baf03 175 PANTHER PTHR40942 54 162 2.0E-27 T 26-04-2016 RGE_RS00750 50d71bb716b08d144608a7b8756baf03 175 PRINTS PR00607 Class IE cytochrome C signature 103 113 1.9E-12 T 26-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RGE_RS00750 50d71bb716b08d144608a7b8756baf03 175 PRINTS PR00607 Class IE cytochrome C signature 92 103 1.9E-12 T 26-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RGE_RS00750 50d71bb716b08d144608a7b8756baf03 175 PRINTS PR00607 Class IE cytochrome C signature 145 156 1.9E-12 T 26-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RGE_RS00750 50d71bb716b08d144608a7b8756baf03 175 PRINTS PR00607 Class IE cytochrome C signature 131 143 1.9E-12 T 26-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RGE_RS00750 50d71bb716b08d144608a7b8756baf03 175 SUPERFAMILY SSF46626 82 157 6.55E-17 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS00750 50d71bb716b08d144608a7b8756baf03 175 PANTHER PTHR40942:SF1 54 162 2.0E-27 T 26-04-2016 RGE_RS06405 e781f8e122df5e3c5c6912c345d41a97 270 Gene3D G3DSA:3.40.190.10 214 254 1.9E-39 T 26-04-2016 RGE_RS06405 e781f8e122df5e3c5c6912c345d41a97 270 Gene3D G3DSA:3.40.190.10 31 112 1.9E-39 T 26-04-2016 RGE_RS06405 e781f8e122df5e3c5c6912c345d41a97 270 SUPERFAMILY SSF53850 6 254 3.42E-70 T 26-04-2016 RGE_RS06405 e781f8e122df5e3c5c6912c345d41a97 270 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 253 1.5E-61 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS06405 e781f8e122df5e3c5c6912c345d41a97 270 SMART SM00062 34 255 3.3E-68 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS06405 e781f8e122df5e3c5c6912c345d41a97 270 PANTHER PTHR18966 21 266 2.2E-89 T 26-04-2016 RGE_RS06405 e781f8e122df5e3c5c6912c345d41a97 270 PANTHER PTHR18966:SF191 21 266 2.2E-89 T 26-04-2016 RGE_RS06405 e781f8e122df5e3c5c6912c345d41a97 270 Gene3D G3DSA:3.40.190.10 113 207 5.6E-19 T 26-04-2016 RGE_RS18525 396169e888f950680ece1c66e5e6607d 417 Pfam PF13360 PQQ-like domain 286 385 5.0E-8 T 26-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RGE_RS18525 396169e888f950680ece1c66e5e6607d 417 Pfam PF13360 PQQ-like domain 65 195 2.9E-5 T 26-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RGE_RS18525 396169e888f950680ece1c66e5e6607d 417 SUPERFAMILY SSF50998 20 383 2.62E-24 T 26-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RGE_RS18525 396169e888f950680ece1c66e5e6607d 417 Gene3D G3DSA:2.140.10.10 311 390 1.1E-8 T 26-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RGE_RS18525 396169e888f950680ece1c66e5e6607d 417 Gene3D G3DSA:2.140.10.10 9 310 4.5E-26 T 26-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RGE_RS18525 396169e888f950680ece1c66e5e6607d 417 SMART SM00564 352 382 18.0 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS18525 396169e888f950680ece1c66e5e6607d 417 SMART SM00564 74 110 17.0 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS18525 396169e888f950680ece1c66e5e6607d 417 SMART SM00564 121 155 0.0013 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS11005 fe108072e6e56508589c2d078394ab53 698 PANTHER PTHR32552:SF30 4 698 6.8E-67 T 26-04-2016 RGE_RS11005 fe108072e6e56508589c2d078394ab53 698 SUPERFAMILY SSF56935 21 698 2.14E-75 T 26-04-2016 RGE_RS11005 fe108072e6e56508589c2d078394ab53 698 Pfam PF00593 TonB dependent receptor 445 693 4.7E-24 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS11005 fe108072e6e56508589c2d078394ab53 698 PANTHER PTHR32552 4 698 6.8E-67 T 26-04-2016 RGE_RS11005 fe108072e6e56508589c2d078394ab53 698 Pfam PF07715 TonB-dependent Receptor Plug Domain 40 143 1.3E-11 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS11005 fe108072e6e56508589c2d078394ab53 698 Gene3D G3DSA:2.170.130.10 21 144 4.0E-22 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS11005 fe108072e6e56508589c2d078394ab53 698 Gene3D G3DSA:2.40.170.20 145 695 2.3E-51 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS01935 e9f39149d9f01ebfa2277ef298d0a83e 273 PANTHER PTHR30043 7 270 2.4E-64 T 26-04-2016 RGE_RS01935 e9f39149d9f01ebfa2277ef298d0a83e 273 Gene3D G3DSA:1.10.3720.10 68 260 2.3E-16 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS01935 e9f39149d9f01ebfa2277ef298d0a83e 273 SUPERFAMILY SSF161098 69 263 3.53E-21 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS01935 e9f39149d9f01ebfa2277ef298d0a83e 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 260 2.2E-9 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS01935 e9f39149d9f01ebfa2277ef298d0a83e 273 PANTHER PTHR30043:SF1 7 270 2.4E-64 T 26-04-2016 RGE_RS09675 3ca77e41bb21d8caf1f30655a4f5c82e 258 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 178 255 4.3E-26 T 26-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RGE_RS09675 3ca77e41bb21d8caf1f30655a4f5c82e 258 Pfam PF00460 Flagella basal body rod protein 1 31 6.1E-10 T 26-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RGE_RS09675 3ca77e41bb21d8caf1f30655a4f5c82e 258 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 140 239 3.7E-33 T 26-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RGE_RS09675 3ca77e41bb21d8caf1f30655a4f5c82e 258 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 132 1.0E-39 T 26-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RGE_RS09675 3ca77e41bb21d8caf1f30655a4f5c82e 258 PANTHER PTHR30435:SF19 1 258 2.4E-111 T 26-04-2016 RGE_RS09675 3ca77e41bb21d8caf1f30655a4f5c82e 258 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 1 255 3.0E-106 T 26-04-2016 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 RGE_RS09675 3ca77e41bb21d8caf1f30655a4f5c82e 258 SUPERFAMILY SSF117143 88 218 9.02E-34 T 26-04-2016 RGE_RS09675 3ca77e41bb21d8caf1f30655a4f5c82e 258 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 7 27 - T 26-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RGE_RS09675 3ca77e41bb21d8caf1f30655a4f5c82e 258 PANTHER PTHR30435 1 258 2.4E-111 T 26-04-2016 RGE_RS19265 f6f8d915baecc2b5f19026a0484abd96 337 Pfam PF00962 Adenosine/AMP deaminase 10 326 6.5E-72 T 26-04-2016 IPR001365 Adenosine/AMP deaminase domain GO:0019239 RGE_RS19265 f6f8d915baecc2b5f19026a0484abd96 337 PANTHER PTHR11409 3 334 2.4E-160 T 26-04-2016 RGE_RS19265 f6f8d915baecc2b5f19026a0484abd96 337 PANTHER PTHR11409:SF41 3 334 2.4E-160 T 26-04-2016 RGE_RS19265 f6f8d915baecc2b5f19026a0484abd96 337 SUPERFAMILY SSF51556 7 328 1.95E-86 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS19265 f6f8d915baecc2b5f19026a0484abd96 337 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 11 325 1.7E-115 T 26-04-2016 IPR006330 Adenosine/adenine deaminase GO:0019239 RGE_RS19265 f6f8d915baecc2b5f19026a0484abd96 337 Gene3D G3DSA:3.20.20.140 7 333 2.5E-102 T 26-04-2016 RGE_RS19265 f6f8d915baecc2b5f19026a0484abd96 337 Hamap MF_01962 Adenine deaminase. 6 319 85.437 T 26-04-2016 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 167 193 - T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 PANTHER PTHR33149:SF2 65 195 1.3E-28 T 26-04-2016 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 Pfam PF00124 Photosynthetic reaction centre protein 30 273 8.2E-100 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 84 112 5.2E-66 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 173 199 5.2E-66 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 226 251 5.2E-66 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 34 55 5.2E-66 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 117 139 5.2E-66 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 SUPERFAMILY SSF81483 3 276 6.41E-116 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 Gene3D G3DSA:1.20.85.10 167 274 6.2E-50 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 TIGRFAM TIGR01157 pufL: photosynthetic reaction center L subunit 35 273 6.5E-137 T 26-04-2016 IPR005871 Photosynthetic reaction centre, L subunit GO:0019684|GO:0030077|GO:0045156 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 PANTHER PTHR33149 65 195 1.3E-28 T 26-04-2016 RGE_RS16390 351f5c62e0232afa352005067bf2530d 279 Gene3D G3DSA:1.20.85.10 5 164 6.5E-64 T 26-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RGE_RS03935 a13520ccdbb6c15d4fe0a46ff1cf6cc5 159 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 17 38 2.3E-9 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS03935 a13520ccdbb6c15d4fe0a46ff1cf6cc5 159 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 14 78 9.5E-13 T 26-04-2016 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 RGE_RS03935 a13520ccdbb6c15d4fe0a46ff1cf6cc5 159 SUPERFAMILY SSF54523 19 97 2.59E-10 T 26-04-2016 RGE_RS03935 a13520ccdbb6c15d4fe0a46ff1cf6cc5 159 Pfam PF13633 Prokaryotic N-terminal methylation site 17 38 8.6E-10 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS05630 855d26349e62e1fb2db680b2f8440054 279 Gene3D G3DSA:3.40.140.10 140 273 3.0E-49 T 26-04-2016 RGE_RS05630 855d26349e62e1fb2db680b2f8440054 279 Gene3D G3DSA:3.10.20.10 39 124 1.5E-25 T 26-04-2016 RGE_RS05630 855d26349e62e1fb2db680b2f8440054 279 PIRSF PIRSF015626 5 275 5.6E-78 T 26-04-2016 IPR003786 Protein FdhD GO:0016783 RGE_RS05630 855d26349e62e1fb2db680b2f8440054 279 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 34 272 4.9E-57 T 26-04-2016 IPR003786 Protein FdhD GO:0016783 RGE_RS05630 855d26349e62e1fb2db680b2f8440054 279 Hamap MF_00187 Protein FdhD [fdhD]. 14 273 33.414 T 26-04-2016 IPR003786 Protein FdhD GO:0016783 RGE_RS05630 855d26349e62e1fb2db680b2f8440054 279 SUPERFAMILY SSF53927 17 272 6.92E-78 T 26-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RGE_RS05630 855d26349e62e1fb2db680b2f8440054 279 Pfam PF02634 FdhD/NarQ family 37 272 1.0E-72 T 26-04-2016 IPR003786 Protein FdhD GO:0016783 RGE_RS05630 855d26349e62e1fb2db680b2f8440054 279 PANTHER PTHR30592 4 272 2.4E-97 T 26-04-2016 RGE_RS05630 855d26349e62e1fb2db680b2f8440054 279 PANTHER PTHR30592:SF1 4 272 2.4E-97 T 26-04-2016 RGE_RS11960 adb43517db7ca938c21f4862066a7308 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 26-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RGE_RS11960 adb43517db7ca938c21f4862066a7308 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 70 2.0E-20 T 26-04-2016 RGE_RS11960 adb43517db7ca938c21f4862066a7308 118 SUPERFAMILY SSF74731 2 116 9.03E-50 T 26-04-2016 RGE_RS11960 adb43517db7ca938c21f4862066a7308 118 Pfam PF00453 Ribosomal protein L20 3 108 6.0E-50 T 26-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RGE_RS11960 adb43517db7ca938c21f4862066a7308 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 5.9E-49 T 26-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RGE_RS11960 adb43517db7ca938c21f4862066a7308 118 PANTHER PTHR10986:SF12 2 117 1.0E-62 T 26-04-2016 RGE_RS11960 adb43517db7ca938c21f4862066a7308 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.91 T 26-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RGE_RS11960 adb43517db7ca938c21f4862066a7308 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 6.19E-40 T 26-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RGE_RS11960 adb43517db7ca938c21f4862066a7308 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 6.19E-40 T 26-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RGE_RS11960 adb43517db7ca938c21f4862066a7308 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 6.19E-40 T 26-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RGE_RS11960 adb43517db7ca938c21f4862066a7308 118 PANTHER PTHR10986 2 117 1.0E-62 T 26-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RGE_RS11960 adb43517db7ca938c21f4862066a7308 118 Gene3D G3DSA:1.10.1900.20 55 117 3.8E-30 T 26-04-2016 RGE_RS15315 584ffdaeb488ba7159751971e7a8a844 562 PANTHER PTHR30193:SF3 10 282 2.7E-70 T 26-04-2016 RGE_RS15315 584ffdaeb488ba7159751971e7a8a844 562 Gene3D G3DSA:1.10.3720.10 19 275 3.3E-45 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15315 584ffdaeb488ba7159751971e7a8a844 562 Gene3D G3DSA:1.10.3720.10 296 554 1.0E-31 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15315 584ffdaeb488ba7159751971e7a8a844 562 PANTHER PTHR30193 10 282 2.7E-70 T 26-04-2016 RGE_RS15315 584ffdaeb488ba7159751971e7a8a844 562 TIGRFAM TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein 21 558 1.4E-216 T 26-04-2016 IPR017664 2-aminoethylphosphonate ABC transport system, permease protein, putative RGE_RS15315 584ffdaeb488ba7159751971e7a8a844 562 SUPERFAMILY SSF161098 18 269 1.57E-48 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15315 584ffdaeb488ba7159751971e7a8a844 562 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 379 551 2.2E-14 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15315 584ffdaeb488ba7159751971e7a8a844 562 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 273 4.4E-10 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15315 584ffdaeb488ba7159751971e7a8a844 562 SUPERFAMILY SSF161098 301 542 9.7E-35 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 Gene3D G3DSA:3.30.413.10 415 557 1.2E-35 T 26-04-2016 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 SUPERFAMILY SSF55124 263 286 3.76E-20 T 26-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 SUPERFAMILY SSF55124 1 136 2.29E-21 T 26-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 PANTHER PTHR11493:SF47 1 304 2.2E-127 T 26-04-2016 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 PANTHER PTHR11493:SF47 334 562 2.2E-127 T 26-04-2016 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 PANTHER PTHR11493 1 304 2.2E-127 T 26-04-2016 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 PANTHER PTHR11493 334 562 2.2E-127 T 26-04-2016 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 421 558 1.5E-14 T 26-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 129 279 3.3E-37 T 26-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 SUPERFAMILY SSF56014 130 285 3.4E-45 T 26-04-2016 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 SUPERFAMILY SSF55124 322 428 3.76E-20 T 26-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 340 404 1.6E-14 T 26-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 53 121 2.1E-9 T 26-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 SUPERFAMILY SSF56014 414 559 1.1E-38 T 26-04-2016 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 Gene3D G3DSA:3.30.413.10 130 286 5.3E-41 T 26-04-2016 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 Gene3D G3DSA:3.90.480.10 328 409 4.1E-27 T 26-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RGE_RS11430 46511d06546e4eb342849ef9c17f9bd6 570 Gene3D G3DSA:3.90.480.10 48 127 4.1E-27 T 26-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RGE_RS15180 726c5a05fd28c6f06d3d917b8cf252e4 490 PANTHER PTHR30203 1 490 4.6E-98 T 26-04-2016 RGE_RS15180 726c5a05fd28c6f06d3d917b8cf252e4 490 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 19 472 5.7E-104 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS15180 726c5a05fd28c6f06d3d917b8cf252e4 490 SUPERFAMILY SSF56954 10 474 6.67E-98 T 26-04-2016 RGE_RS15180 726c5a05fd28c6f06d3d917b8cf252e4 490 PANTHER PTHR30203:SF3 1 490 4.6E-98 T 26-04-2016 RGE_RS15180 726c5a05fd28c6f06d3d917b8cf252e4 490 Pfam PF02321 Outer membrane efflux protein 289 470 4.0E-25 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS15180 726c5a05fd28c6f06d3d917b8cf252e4 490 Pfam PF02321 Outer membrane efflux protein 72 264 1.9E-24 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS15180 726c5a05fd28c6f06d3d917b8cf252e4 490 Gene3D G3DSA:1.20.1600.10 61 98 3.8E-91 T 26-04-2016 RGE_RS15180 726c5a05fd28c6f06d3d917b8cf252e4 490 Gene3D G3DSA:1.20.1600.10 359 473 3.8E-91 T 26-04-2016 RGE_RS15180 726c5a05fd28c6f06d3d917b8cf252e4 490 Gene3D G3DSA:1.20.1600.10 152 321 3.8E-91 T 26-04-2016 RGE_RS15180 726c5a05fd28c6f06d3d917b8cf252e4 490 Gene3D G3DSA:2.20.200.10 108 151 3.0E-11 T 26-04-2016 RGE_RS15180 726c5a05fd28c6f06d3d917b8cf252e4 490 Gene3D G3DSA:2.20.200.10 322 352 3.0E-11 T 26-04-2016 RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 Pfam PF13424 Tetratricopeptide repeat 134 203 2.3E-9 T 26-04-2016 RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 SUPERFAMILY SSF48452 54 241 1.01E-15 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 Pfam PF00990 Diguanylate cyclase, GGDEF domain 368 524 2.3E-44 T 26-04-2016 IPR000160 GGDEF domain RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 Gene3D G3DSA:3.30.70.270 368 526 8.0E-52 T 26-04-2016 RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 PANTHER PTHR10799 323 525 1.0E-28 T 26-04-2016 RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 PANTHER PTHR10799:SF750 323 525 1.0E-28 T 26-04-2016 RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 SMART SM00028 174 207 0.019 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 SMART SM00028 55 88 400.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 SMART SM00028 134 167 29.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 SMART SM00267 356 528 7.5E-57 T 26-04-2016 IPR000160 GGDEF domain RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 Gene3D G3DSA:1.25.40.10 62 221 7.1E-19 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 Gene3D G3DSA:1.25.40.10 267 360 7.1E-19 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 SUPERFAMILY SSF48452 254 328 4.51E-5 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 SUPERFAMILY SSF55073 372 526 9.89E-47 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS16535 c2d96e16cb371aa650c5a764e268c6d6 533 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 363 526 3.6E-50 T 26-04-2016 IPR000160 GGDEF domain RGE_RS03575 03a1bd71fc05b6511f5b2c746504c5fb 224 SUPERFAMILY SSF89155 73 213 9.81E-25 T 26-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RGE_RS03575 03a1bd71fc05b6511f5b2c746504c5fb 224 SUPERFAMILY SSF89155 14 40 9.81E-25 T 26-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RGE_RS03575 03a1bd71fc05b6511f5b2c746504c5fb 224 Pfam PF02613 Nitrate reductase delta subunit 68 184 1.9E-15 T 26-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RGE_RS03575 03a1bd71fc05b6511f5b2c746504c5fb 224 Gene3D G3DSA:1.10.3480.10 70 215 2.0E-30 T 26-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RGE_RS03575 03a1bd71fc05b6511f5b2c746504c5fb 224 Gene3D G3DSA:1.10.3480.10 14 36 2.0E-30 T 26-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RGE_RS15090 561845fca08542f07fda25fa7da14e0b 155 TIGRFAM TIGR00086 smpB: SsrA-binding protein 4 145 8.5E-50 T 26-04-2016 IPR000037 SsrA-binding protein GO:0003723 RGE_RS15090 561845fca08542f07fda25fa7da14e0b 155 Hamap MF_00023 SsrA-binding protein [smpB]. 1 151 67.215 T 26-04-2016 IPR000037 SsrA-binding protein GO:0003723 RGE_RS15090 561845fca08542f07fda25fa7da14e0b 155 Gene3D G3DSA:2.40.280.10 4 123 1.3E-46 T 26-04-2016 IPR023620 Small protein B RGE_RS15090 561845fca08542f07fda25fa7da14e0b 155 PANTHER PTHR30308 1 151 2.7E-65 T 26-04-2016 RGE_RS15090 561845fca08542f07fda25fa7da14e0b 155 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 4 128 3.0E-49 T 26-04-2016 IPR000037 SsrA-binding protein GO:0003723 RGE_RS15090 561845fca08542f07fda25fa7da14e0b 155 PANTHER PTHR30308:SF2 1 151 2.7E-65 T 26-04-2016 RGE_RS15090 561845fca08542f07fda25fa7da14e0b 155 SUPERFAMILY SSF74982 3 128 3.66E-47 T 26-04-2016 IPR023620 Small protein B RGE_RS15090 561845fca08542f07fda25fa7da14e0b 155 Pfam PF01668 SmpB protein 4 66 2.4E-27 T 26-04-2016 IPR000037 SsrA-binding protein GO:0003723 RGE_RS15090 561845fca08542f07fda25fa7da14e0b 155 ProSitePatterns PS01317 SsrA-binding protein. 22 34 - T 26-04-2016 IPR020081 SsrA-binding protein, conserved site RGE_RS05710 3732012bd69ea7c774b358e659cfee0d 483 Pfam PF12801 4Fe-4S binding domain 95 133 5.4E-10 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS05710 3732012bd69ea7c774b358e659cfee0d 483 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 39 480 1.1E-152 T 26-04-2016 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021 RGE_RS05710 3732012bd69ea7c774b358e659cfee0d 483 Gene3D G3DSA:3.30.70.20 279 328 2.0E-7 T 26-04-2016 RGE_RS05710 3732012bd69ea7c774b358e659cfee0d 483 PANTHER PTHR24960 23 397 3.0E-130 T 26-04-2016 RGE_RS05710 3732012bd69ea7c774b358e659cfee0d 483 Gene3D G3DSA:2.60.40.10 358 483 9.4E-34 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS05710 3732012bd69ea7c774b358e659cfee0d 483 Pfam PF13746 4Fe-4S dicluster domain 217 322 9.8E-44 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS05710 3732012bd69ea7c774b358e659cfee0d 483 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 270 281 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS05710 3732012bd69ea7c774b358e659cfee0d 483 SUPERFAMILY SSF54862 169 366 5.37E-33 T 26-04-2016 RGE_RS05710 3732012bd69ea7c774b358e659cfee0d 483 SUPERFAMILY SSF54862 103 131 5.37E-33 T 26-04-2016 RGE_RS05710 3732012bd69ea7c774b358e659cfee0d 483 PANTHER PTHR24960:SF45 23 397 3.0E-130 T 26-04-2016 RGE_RS05710 3732012bd69ea7c774b358e659cfee0d 483 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 358 482 1.3E-28 T 26-04-2016 IPR032879 FixG, C-terminal immunoglobulin-like domain RGE_RS05710 3732012bd69ea7c774b358e659cfee0d 483 Gene3D G3DSA:1.10.1060.10 221 278 4.2E-8 T 26-04-2016 RGE_RS00275 2a4f62c778b3fa9ece51ed911698a7f1 207 SUPERFAMILY SSF53335 8 205 6.31E-42 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS00275 2a4f62c778b3fa9ece51ed911698a7f1 207 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 14 203 25.664 T 26-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RGE_RS00275 2a4f62c778b3fa9ece51ed911698a7f1 207 PIRSF PIRSF003078 2 207 6.6E-49 T 26-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RGE_RS00275 2a4f62c778b3fa9ece51ed911698a7f1 207 Pfam PF02527 rRNA small subunit methyltransferase G 21 199 2.9E-46 T 26-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RGE_RS00275 2a4f62c778b3fa9ece51ed911698a7f1 207 PANTHER PTHR31760:SF0 7 205 4.5E-57 T 26-04-2016 RGE_RS00275 2a4f62c778b3fa9ece51ed911698a7f1 207 PANTHER PTHR31760 7 205 4.5E-57 T 26-04-2016 RGE_RS00275 2a4f62c778b3fa9ece51ed911698a7f1 207 Gene3D G3DSA:3.40.50.150 5 206 5.0E-62 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS00275 2a4f62c778b3fa9ece51ed911698a7f1 207 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 25 204 2.6E-44 T 26-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RGE_RS17865 41ec280c716d1244a806c3df63903993 189 SUPERFAMILY SSF51283 3 188 1.96E-52 T 26-04-2016 IPR029054 dUTPase-like RGE_RS17865 41ec280c716d1244a806c3df63903993 189 Pfam PF00692 dUTPase 75 184 5.8E-6 T 26-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 RGE_RS17865 41ec280c716d1244a806c3df63903993 189 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 1 189 27.705 T 26-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 RGE_RS17865 41ec280c716d1244a806c3df63903993 189 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 4 188 5.3E-49 T 26-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 RGE_RS17865 41ec280c716d1244a806c3df63903993 189 Gene3D G3DSA:2.70.40.10 3 188 1.9E-69 T 26-04-2016 IPR029054 dUTPase-like RGE_RS17865 41ec280c716d1244a806c3df63903993 189 PANTHER PTHR11241:SF1 2 188 1.1E-75 T 26-04-2016 RGE_RS17865 41ec280c716d1244a806c3df63903993 189 PANTHER PTHR11241 2 188 1.1E-75 T 26-04-2016 RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 Gene3D G3DSA:3.40.50.20 1 128 4.3E-50 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 326 2.6E-73 T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 Gene3D G3DSA:3.30.470.20 205 457 1.1E-95 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 PANTHER PTHR18866 1 668 0.0 T 26-04-2016 RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 PANTHER PTHR18866:SF102 1 668 0.0 T 26-04-2016 RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 621 638 - T 26-04-2016 IPR001882 Biotin-binding site RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 SMART SM00878 340 453 2.9E-48 T 26-04-2016 IPR005482 Biotin carboxylase, C-terminal RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 5.2E-42 T 26-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 Pfam PF00364 Biotin-requiring enzyme 599 664 3.5E-18 T 26-04-2016 IPR000089 Biotin/lipoyl attachment RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 Gene3D G3DSA:2.40.50.100 596 664 1.4E-25 T 26-04-2016 RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 SUPERFAMILY SSF52440 1 113 1.58E-46 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 SUPERFAMILY SSF51230 585 664 3.27E-21 T 26-04-2016 IPR011053 Single hybrid motif RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 Pfam PF02785 Biotin carboxylase C-terminal domain 340 454 7.2E-32 T 26-04-2016 IPR005482 Biotin carboxylase, C-terminal RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 290 297 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 SUPERFAMILY SSF51246 335 457 3.87E-34 T 26-04-2016 IPR011054 Rudiment single hybrid motif RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 SUPERFAMILY SSF56059 83 349 4.77E-66 T 26-04-2016 RGE_RS21165 31d5e520345fe42cab70722a6d0f5a95 668 Gene3D G3DSA:3.30.1490.20 129 202 1.1E-28 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS01705 0f918fb8dddfbfac0552a28390834156 60 Gene3D G3DSA:3.30.1390.20 4 59 6.8E-28 T 26-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RGE_RS01705 0f918fb8dddfbfac0552a28390834156 60 SUPERFAMILY SSF55129 5 59 2.62E-19 T 26-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RGE_RS01705 0f918fb8dddfbfac0552a28390834156 60 PANTHER PTHR15892 5 59 1.2E-22 T 26-04-2016 RGE_RS01705 0f918fb8dddfbfac0552a28390834156 60 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 7 59 1.1E-23 T 26-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RGE_RS01705 0f918fb8dddfbfac0552a28390834156 60 Pfam PF00327 Ribosomal protein L30p/L7e 8 57 3.3E-17 T 26-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RGE_RS01705 0f918fb8dddfbfac0552a28390834156 60 PIRSF PIRSF002211 1 60 8.0E-26 T 26-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RGE_RS01705 0f918fb8dddfbfac0552a28390834156 60 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 3 60 16.883 T 26-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RGE_RS17875 7c2df46f3cf5f3cfa3efa0274d8b71be 344 PANTHER PTHR10289:SF5 4 342 1.3E-129 T 26-04-2016 RGE_RS17875 7c2df46f3cf5f3cfa3efa0274d8b71be 344 Pfam PF01212 Beta-eliminating lyase 5 287 1.4E-78 T 26-04-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 RGE_RS17875 7c2df46f3cf5f3cfa3efa0274d8b71be 344 PIRSF PIRSF017617 1 344 5.1E-119 T 26-04-2016 IPR023603 Threonine aldolase RGE_RS17875 7c2df46f3cf5f3cfa3efa0274d8b71be 344 PANTHER PTHR10289 4 342 1.3E-129 T 26-04-2016 RGE_RS17875 7c2df46f3cf5f3cfa3efa0274d8b71be 344 SUPERFAMILY SSF53383 4 342 2.36E-106 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS17875 7c2df46f3cf5f3cfa3efa0274d8b71be 344 Gene3D G3DSA:3.40.640.10 2 248 1.0E-74 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS17875 7c2df46f3cf5f3cfa3efa0274d8b71be 344 Gene3D G3DSA:3.90.1150.10 250 342 2.0E-28 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS16430 9791ef9dd07b3486605b68ffc4574083 390 PANTHER PTHR11746:SF63 35 371 8.2E-36 T 26-04-2016 RGE_RS16430 9791ef9dd07b3486605b68ffc4574083 390 SUPERFAMILY SSF46785 54 135 5.05E-13 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS16430 9791ef9dd07b3486605b68ffc4574083 390 Gene3D G3DSA:3.40.50.150 142 372 1.5E-39 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16430 9791ef9dd07b3486605b68ffc4574083 390 PANTHER PTHR11746 35 371 8.2E-36 T 26-04-2016 RGE_RS16430 9791ef9dd07b3486605b68ffc4574083 390 Pfam PF00891 O-methyltransferase 141 370 1.1E-44 T 26-04-2016 IPR001077 O-methyltransferase, family 2 GO:0008171 RGE_RS16430 9791ef9dd07b3486605b68ffc4574083 390 Pfam PF16864 Dimerisation domain 56 118 5.2E-12 T 26-04-2016 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain RGE_RS16430 9791ef9dd07b3486605b68ffc4574083 390 Gene3D G3DSA:1.10.10.10 51 136 5.0E-13 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS16430 9791ef9dd07b3486605b68ffc4574083 390 SUPERFAMILY SSF53335 190 378 1.58E-36 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 SUPERFAMILY SSF52009 397 515 5.89E-31 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 SUPERFAMILY SSF55594 166 243 2.36E-19 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 SUPERFAMILY SSF47831 310 412 7.85E-23 T 26-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 523 807 3.5E-104 T 26-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 PANTHER PTHR22931:SF15 318 817 5.1E-234 T 26-04-2016 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 Gene3D G3DSA:1.10.274.10 310 402 4.3E-25 T 26-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 Pfam PF05524 PEP-utilising enzyme, N-terminal 278 397 1.1E-21 T 26-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 169 242 2.5E-15 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 53 69 - T 26-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 Pfam PF00381 PTS HPr component phosphorylation site 168 240 5.3E-20 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 Gene3D G3DSA:3.50.30.10 403 526 8.9E-37 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 SUPERFAMILY SSF55804 9 146 1.44E-31 T 26-04-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 175 182 - T 26-04-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 714 732 - T 26-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 456 467 - T 26-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 PRINTS PR00107 Phosphocarrier protein signature 200 215 6.9E-12 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 PRINTS PR00107 Phosphocarrier protein signature 215 232 6.9E-12 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 PRINTS PR00107 Phosphocarrier protein signature 175 191 6.9E-12 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 Gene3D G3DSA:3.20.20.60 527 831 1.9E-100 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 PANTHER PTHR22931 318 817 5.1E-234 T 26-04-2016 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 767 779 2.0E-21 T 26-04-2016 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 731 746 2.0E-21 T 26-04-2016 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 565 584 2.0E-21 T 26-04-2016 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 714 729 2.0E-21 T 26-04-2016 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 Gene3D G3DSA:3.30.1340.10 166 243 3.1E-23 T 26-04-2016 IPR000032 Phosphocarrier HPr protein-like RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 Pfam PF00391 PEP-utilising enzyme, mobile domain 424 497 2.2E-24 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 9 145 8.6E-28 T 26-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 Gene3D G3DSA:3.40.930.10 8 146 9.5E-33 T 26-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 278 831 1.4E-140 T 26-04-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 RGE_RS07920 fb37c08b47b0d01f8ce168c8fc63537f 838 SUPERFAMILY SSF51621 522 816 5.76E-99 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS22165 1255a7a8ebea2ec04af39370e19d1762 394 PANTHER PTHR24023:SF593 54 389 2.4E-29 T 26-04-2016 RGE_RS22165 1255a7a8ebea2ec04af39370e19d1762 394 SUPERFAMILY SSF89796 10 386 1.44E-132 T 26-04-2016 IPR023606 CoA-transferase family III domain RGE_RS22165 1255a7a8ebea2ec04af39370e19d1762 394 Pfam PF02515 CoA-transferase family III 13 379 1.4E-128 T 26-04-2016 IPR003673 CoA-transferase family III GO:0003824 RGE_RS22165 1255a7a8ebea2ec04af39370e19d1762 394 Gene3D G3DSA:3.40.50.10540 10 223 2.1E-108 T 26-04-2016 IPR023606 CoA-transferase family III domain RGE_RS22165 1255a7a8ebea2ec04af39370e19d1762 394 Gene3D G3DSA:3.40.50.10540 312 387 2.1E-108 T 26-04-2016 IPR023606 CoA-transferase family III domain RGE_RS22165 1255a7a8ebea2ec04af39370e19d1762 394 Gene3D G3DSA:3.30.1540.10 230 311 4.5E-28 T 26-04-2016 RGE_RS22165 1255a7a8ebea2ec04af39370e19d1762 394 PANTHER PTHR24023 54 389 2.4E-29 T 26-04-2016 RGE_RS23010 4738d349408d576ef44bbd1a82a6aa4f 321 Pfam PF13673 Acetyltransferase (GNAT) domain 66 155 3.9E-15 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS23010 4738d349408d576ef44bbd1a82a6aa4f 321 Gene3D G3DSA:3.40.630.30 12 155 1.1E-26 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS23010 4738d349408d576ef44bbd1a82a6aa4f 321 Gene3D G3DSA:3.40.630.30 175 319 2.1E-14 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS23010 4738d349408d576ef44bbd1a82a6aa4f 321 SUPERFAMILY SSF55729 175 315 4.63E-17 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS23010 4738d349408d576ef44bbd1a82a6aa4f 321 Pfam PF00583 Acetyltransferase (GNAT) family 223 300 3.5E-8 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS23010 4738d349408d576ef44bbd1a82a6aa4f 321 SUPERFAMILY SSF55729 12 148 6.35E-24 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS05730 c4800700d355e7f47e30df107971ffde 504 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 328 471 1.2E-44 T 26-04-2016 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain RGE_RS05730 c4800700d355e7f47e30df107971ffde 504 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 14 498 4.9E-246 T 26-04-2016 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 RGE_RS05730 c4800700d355e7f47e30df107971ffde 504 Gene3D G3DSA:3.40.810.20 234 497 2.8E-78 T 26-04-2016 RGE_RS05730 c4800700d355e7f47e30df107971ffde 504 PANTHER PTHR21432:SF10 5 497 2.2E-259 T 26-04-2016 RGE_RS05730 c4800700d355e7f47e30df107971ffde 504 SUPERFAMILY SSF100950 234 499 1.22E-84 T 26-04-2016 RGE_RS05730 c4800700d355e7f47e30df107971ffde 504 SUPERFAMILY SSF100950 6 230 1.68E-71 T 26-04-2016 RGE_RS05730 c4800700d355e7f47e30df107971ffde 504 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 17 224 8.3E-26 T 26-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 RGE_RS05730 c4800700d355e7f47e30df107971ffde 504 Gene3D G3DSA:3.40.1080.10 13 228 7.7E-45 T 26-04-2016 RGE_RS05730 c4800700d355e7f47e30df107971ffde 504 PANTHER PTHR21432 5 497 2.2E-259 T 26-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 RGE_RS06850 e4bebad0c632a137e3c5ef40302a37ca 304 PANTHER PTHR12715 6 303 5.6E-57 T 26-04-2016 RGE_RS06850 e4bebad0c632a137e3c5ef40302a37ca 304 SUPERFAMILY SSF103481 40 145 1.57E-16 T 26-04-2016 RGE_RS06850 e4bebad0c632a137e3c5ef40302a37ca 304 Pfam PF00892 EamA-like transporter family 9 142 4.5E-22 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS06850 e4bebad0c632a137e3c5ef40302a37ca 304 Pfam PF00892 EamA-like transporter family 158 302 1.5E-10 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS06850 e4bebad0c632a137e3c5ef40302a37ca 304 SUPERFAMILY SSF103481 210 303 2.09E-12 T 26-04-2016 RGE_RS06850 e4bebad0c632a137e3c5ef40302a37ca 304 PANTHER PTHR12715:SF12 6 303 5.6E-57 T 26-04-2016 RGE_RS19250 fb771b6a0bdf400c2ab3cf6446a1d903 843 PANTHER PTHR30287 4 842 1.7E-119 T 26-04-2016 RGE_RS19250 fb771b6a0bdf400c2ab3cf6446a1d903 843 Pfam PF02687 FtsX-like permease family 719 831 3.1E-11 T 26-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RGE_RS19250 fb771b6a0bdf400c2ab3cf6446a1d903 843 Pfam PF02687 FtsX-like permease family 272 387 1.6E-7 T 26-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RGE_RS06610 6dc26fe2ed9eb4a519064528e362d51e 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 8.3E-29 T 26-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06610 6dc26fe2ed9eb4a519064528e362d51e 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 26-04-2016 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06610 6dc26fe2ed9eb4a519064528e362d51e 82 Gene3D G3DSA:3.30.1320.10 1 79 2.1E-33 T 26-04-2016 IPR023803 Ribosomal protein S16 domain RGE_RS06610 6dc26fe2ed9eb4a519064528e362d51e 82 PANTHER PTHR12919 1 74 8.3E-38 T 26-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06610 6dc26fe2ed9eb4a519064528e362d51e 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 23.587 T 26-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06610 6dc26fe2ed9eb4a519064528e362d51e 82 SUPERFAMILY SSF54565 1 78 2.09E-29 T 26-04-2016 IPR023803 Ribosomal protein S16 domain RGE_RS06610 6dc26fe2ed9eb4a519064528e362d51e 82 Pfam PF00886 Ribosomal protein S16 8 68 1.4E-25 T 26-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 662 681 4.1E-21 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 685 697 4.1E-21 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 482 496 4.1E-21 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 609 619 4.1E-21 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 334 348 4.1E-21 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 Gene3D G3DSA:3.30.70.100 67 130 1.6E-21 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 PANTHER PTHR24093:SF50 65 763 7.4E-156 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 662 678 6.7E-5 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 537 555 6.7E-5 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 Gene3D G3DSA:2.70.150.10 243 384 4.9E-23 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 SUPERFAMILY SSF81665 385 476 7.72E-11 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 218 763 9.2E-144 T 26-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 257 502 1.9E-33 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 578 739 7.3E-30 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 SUPERFAMILY SSF81653 289 384 1.02E-21 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 200 763 1.6E-130 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 Pfam PF00702 haloacid dehalogenase-like hydrolase 480 676 1.8E-33 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 Pfam PF00403 Heavy-metal-associated domain 68 128 6.6E-12 T 26-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 Pfam PF00122 E1-E2 ATPase 255 473 6.6E-51 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 SUPERFAMILY SSF55008 67 131 9.69E-19 T 26-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 484 490 - T 26-04-2016 IPR018303 P-type ATPase, phosphorylation site RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 PANTHER PTHR24093 65 763 7.4E-156 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 Gene3D G3DSA:3.40.50.1000 456 498 6.5E-47 T 26-04-2016 IPR023214 HAD-like domain RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 Gene3D G3DSA:3.40.50.1000 582 730 6.5E-47 T 26-04-2016 IPR023214 HAD-like domain RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 249 764 1.1E-107 T 26-04-2016 RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 SUPERFAMILY SSF56784 534 762 3.54E-50 T 26-04-2016 IPR023214 HAD-like domain RGE_RS15550 60f336f3dc2a1d86b1655d35636d287c 766 SUPERFAMILY SSF56784 481 500 3.54E-50 T 26-04-2016 IPR023214 HAD-like domain RGE_RS01920 f1eaf8184096fc914ed7916e79bffdd5 355 PANTHER PTHR10256 11 343 4.7E-109 T 26-04-2016 RGE_RS01920 f1eaf8184096fc914ed7916e79bffdd5 355 Pfam PF00586 AIR synthase related protein, N-terminal domain 54 161 6.3E-18 T 26-04-2016 IPR016188 PurM-like, N-terminal domain RGE_RS01920 f1eaf8184096fc914ed7916e79bffdd5 355 Gene3D G3DSA:3.30.1330.10 40 166 4.7E-29 T 26-04-2016 IPR016188 PurM-like, N-terminal domain RGE_RS01920 f1eaf8184096fc914ed7916e79bffdd5 355 Hamap MF_00625 Selenide, water dikinase [selD]. 9 355 42.621 T 26-04-2016 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 RGE_RS01920 f1eaf8184096fc914ed7916e79bffdd5 355 SUPERFAMILY SSF56042 168 346 1.94E-46 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS01920 f1eaf8184096fc914ed7916e79bffdd5 355 PIRSF PIRSF036407 6 353 1.4E-109 T 26-04-2016 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 RGE_RS01920 f1eaf8184096fc914ed7916e79bffdd5 355 Gene3D G3DSA:3.90.650.10 170 347 4.8E-15 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS01920 f1eaf8184096fc914ed7916e79bffdd5 355 SUPERFAMILY SSF55326 11 165 2.54E-38 T 26-04-2016 RGE_RS01920 f1eaf8184096fc914ed7916e79bffdd5 355 TIGRFAM TIGR00476 selD: selenide, water dikinase 11 320 8.7E-128 T 26-04-2016 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 RGE_RS01920 f1eaf8184096fc914ed7916e79bffdd5 355 Pfam PF02769 AIR synthase related protein, C-terminal domain 173 348 7.9E-27 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS12075 968263813b2947d969f95a480d50fbfa 356 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 131 150 1.5E-9 T 26-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 RGE_RS12075 968263813b2947d969f95a480d50fbfa 356 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 154 168 1.5E-9 T 26-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 RGE_RS12075 968263813b2947d969f95a480d50fbfa 356 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 240 254 1.5E-9 T 26-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 RGE_RS12075 968263813b2947d969f95a480d50fbfa 356 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 175 191 1.5E-9 T 26-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 RGE_RS12075 968263813b2947d969f95a480d50fbfa 356 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 287 298 1.5E-9 T 26-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 RGE_RS12075 968263813b2947d969f95a480d50fbfa 356 SUPERFAMILY SSF56349 86 301 7.06E-59 T 26-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RGE_RS12075 968263813b2947d969f95a480d50fbfa 356 Gene3D G3DSA:1.20.120.380 242 302 9.0E-18 T 26-04-2016 IPR027362 DNA topoisomerase I catalytic fragment, domain 2 RGE_RS12075 968263813b2947d969f95a480d50fbfa 356 SUPERFAMILY SSF55869 30 90 2.88E-20 T 26-04-2016 RGE_RS12075 968263813b2947d969f95a480d50fbfa 356 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 94 255 5.2E-25 T 26-04-2016 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003918|GO:0006265 RGE_RS12075 968263813b2947d969f95a480d50fbfa 356 Gene3D G3DSA:3.90.15.10 97 226 4.2E-34 T 26-04-2016 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 SMART SM00448 857 969 1.5E-33 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 SMART SM00448 709 827 2.4E-24 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 Pfam PF00512 His Kinase A (phospho-acceptor) domain 466 531 5.2E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 PANTHER PTHR24423:SF486 325 696 4.9E-165 T 26-04-2016 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 PANTHER PTHR24423:SF486 755 974 4.9E-165 T 26-04-2016 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 577 691 2.4E-24 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 SUPERFAMILY SSF52172 856 973 1.99E-38 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 Gene3D G3DSA:3.40.50.2300 855 974 4.8E-39 T 26-04-2016 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 Gene3D G3DSA:3.40.50.2300 709 833 5.3E-26 T 26-04-2016 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 SUPERFAMILY SSF47384 452 532 1.77E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 SUPERFAMILY SSF55785 317 436 5.86E-22 T 26-04-2016 IPR000014 PAS domain RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 SMART SM00387 577 693 4.9E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 SUPERFAMILY SSF55874 520 687 1.44E-42 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 326 446 8.3E-15 T 26-04-2016 IPR000014 PAS domain RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 SMART SM00388 466 531 1.4E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 Gene3D G3DSA:3.30.450.20 208 307 1.1E-12 T 26-04-2016 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 PRINTS PR00344 Bacterial sensor protein C-terminal signature 677 690 6.3E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 PRINTS PR00344 Bacterial sensor protein C-terminal signature 653 671 6.3E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 PRINTS PR00344 Bacterial sensor protein C-terminal signature 618 632 6.3E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 PRINTS PR00344 Bacterial sensor protein C-terminal signature 636 646 6.3E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 PANTHER PTHR24423 325 696 4.9E-165 T 26-04-2016 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 PANTHER PTHR24423 755 974 4.9E-165 T 26-04-2016 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 SUPERFAMILY SSF52172 709 833 4.13E-26 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 Gene3D G3DSA:1.10.287.130 458 527 1.3E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 SMART SM00091 327 393 1.5E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 SMART SM00091 196 262 0.0018 T 26-04-2016 IPR000014 PAS domain RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 Gene3D G3DSA:3.30.450.20 318 436 1.6E-21 T 26-04-2016 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 Gene3D G3DSA:3.30.565.10 532 688 2.4E-42 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 Pfam PF00072 Response regulator receiver domain 859 968 6.6E-26 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 Pfam PF00072 Response regulator receiver domain 712 827 3.3E-16 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 Pfam PF08448 PAS fold 208 309 1.8E-16 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 Pfam PF08448 PAS fold 335 440 5.9E-18 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS02860 0ddb397b4c55d57db50924133235a6d3 978 SUPERFAMILY SSF55785 206 307 9.91E-11 T 26-04-2016 IPR000014 PAS domain RGE_RS01110 69185e71ed5d01cc45e52f3c3b25370f 156 Gene3D G3DSA:1.20.5.620 62 122 8.6E-13 T 26-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain RGE_RS01110 69185e71ed5d01cc45e52f3c3b25370f 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 1.4E-29 T 26-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RGE_RS01110 69185e71ed5d01cc45e52f3c3b25370f 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 156 12.088 T 26-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RGE_RS01110 69185e71ed5d01cc45e52f3c3b25370f 156 SUPERFAMILY SSF81573 62 121 5.89E-10 T 26-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain RGE_RS01110 69185e71ed5d01cc45e52f3c3b25370f 156 PANTHER PTHR33445 1 156 5.7E-38 T 26-04-2016 RGE_RS01110 69185e71ed5d01cc45e52f3c3b25370f 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 155 1.6E-39 T 26-04-2016 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 RGE_RS05855 6732ed4a100185e21f7f76c6e8f8c164 180 Gene3D G3DSA:2.40.33.20 3 180 4.8E-57 T 26-04-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like RGE_RS05855 6732ed4a100185e21f7f76c6e8f8c164 180 PANTHER PTHR36930 2 179 2.1E-37 T 26-04-2016 RGE_RS05855 6732ed4a100185e21f7f76c6e8f8c164 180 PANTHER PTHR36930:SF1 2 179 2.1E-37 T 26-04-2016 RGE_RS05855 6732ed4a100185e21f7f76c6e8f8c164 180 Pfam PF03473 MOSC domain 57 166 3.7E-5 T 26-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RGE_RS05855 6732ed4a100185e21f7f76c6e8f8c164 180 SUPERFAMILY SSF50800 2 170 1.94E-38 T 26-04-2016 IPR011037 Pyruvate kinase-like, insert domain RGE_RS07900 21eed8646ab3e1d1d718077bc46c8d53 224 SUPERFAMILY SSF47616 85 218 6.68E-20 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS07900 21eed8646ab3e1d1d718077bc46c8d53 224 PANTHER PTHR11260:SF282 1 222 1.1E-95 T 26-04-2016 RGE_RS07900 21eed8646ab3e1d1d718077bc46c8d53 224 Pfam PF00043 Glutathione S-transferase, C-terminal domain 147 207 5.0E-8 T 26-04-2016 IPR004046 Glutathione S-transferase, C-terminal RGE_RS07900 21eed8646ab3e1d1d718077bc46c8d53 224 PANTHER PTHR11260 1 222 1.1E-95 T 26-04-2016 RGE_RS07900 21eed8646ab3e1d1d718077bc46c8d53 224 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 74 2.4E-16 T 26-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RGE_RS07900 21eed8646ab3e1d1d718077bc46c8d53 224 SUPERFAMILY SSF52833 3 78 7.48E-19 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS07900 21eed8646ab3e1d1d718077bc46c8d53 224 Gene3D G3DSA:3.40.30.10 4 90 5.7E-19 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS07900 21eed8646ab3e1d1d718077bc46c8d53 224 Gene3D G3DSA:1.20.1050.10 91 213 2.6E-21 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 PANTHER PTHR10799:SF774 445 836 3.5E-65 T 26-04-2016 RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 SMART SM00086 507 549 0.013 T 26-04-2016 IPR001610 PAC motif RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 SMART SM00086 382 424 4.7 T 26-04-2016 IPR001610 PAC motif RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 SMART SM00052 735 984 7.3E-100 T 26-04-2016 IPR001633 EAL domain RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 Gene3D G3DSA:3.30.450.20 307 429 6.4E-13 T 26-04-2016 RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 SUPERFAMILY SSF55785 427 547 9.25E-20 T 26-04-2016 IPR000014 PAS domain RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 Pfam PF00989 PAS fold 436 546 1.9E-11 T 26-04-2016 IPR013767 PAS fold GO:0006355 RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 SUPERFAMILY SSF55073 565 728 1.02E-42 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 SUPERFAMILY SSF55785 316 425 4.71E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 Gene3D G3DSA:3.30.70.270 562 729 3.8E-50 T 26-04-2016 RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 SMART SM00267 549 726 4.8E-59 T 26-04-2016 IPR000160 GGDEF domain RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 Gene3D G3DSA:3.20.20.450 741 991 4.4E-86 T 26-04-2016 IPR001633 EAL domain RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 Gene3D G3DSA:3.30.450.20 430 547 9.3E-21 T 26-04-2016 RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 Pfam PF08447 PAS fold 351 417 6.8E-6 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 Pfam PF00990 Diguanylate cyclase, GGDEF domain 560 721 2.5E-40 T 26-04-2016 IPR000160 GGDEF domain RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 430 555 2.6E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 556 725 3.5E-38 T 26-04-2016 IPR000160 GGDEF domain RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 SMART SM00091 432 496 6.4E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 SMART SM00091 309 375 130.0 T 26-04-2016 IPR000014 PAS domain RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 Pfam PF00563 EAL domain 742 979 5.1E-72 T 26-04-2016 IPR001633 EAL domain RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 PANTHER PTHR10799 445 836 3.5E-65 T 26-04-2016 RGE_RS13140 f6cc1dc40a721a0e003fe04d6e7ddb0c 1012 SUPERFAMILY SSF141868 742 992 1.7E-79 T 26-04-2016 IPR001633 EAL domain RGE_RS14410 c6170885efbbd0b793586d950764defb 409 SUPERFAMILY SSF56954 9 408 2.35E-35 T 26-04-2016 RGE_RS14410 c6170885efbbd0b793586d950764defb 409 Pfam PF02321 Outer membrane efflux protein 56 215 5.2E-8 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS14410 c6170885efbbd0b793586d950764defb 409 Pfam PF02321 Outer membrane efflux protein 233 400 6.6E-8 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS14410 c6170885efbbd0b793586d950764defb 409 Gene3D G3DSA:1.20.1600.10 38 406 5.7E-24 T 26-04-2016 RGE_RS04450 3e8315d74019a9032b9a43dea2fb01e4 227 Gene3D G3DSA:1.10.10.10 134 226 5.0E-30 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04450 3e8315d74019a9032b9a43dea2fb01e4 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 3.6E-23 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS04450 3e8315d74019a9032b9a43dea2fb01e4 227 SUPERFAMILY SSF52172 4 128 6.12E-39 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS04450 3e8315d74019a9032b9a43dea2fb01e4 227 SUPERFAMILY SSF46894 132 226 1.98E-26 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS04450 3e8315d74019a9032b9a43dea2fb01e4 227 SMART SM00862 149 225 7.6E-26 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS04450 3e8315d74019a9032b9a43dea2fb01e4 227 PANTHER PTHR26402 6 226 9.0E-101 T 26-04-2016 RGE_RS04450 3e8315d74019a9032b9a43dea2fb01e4 227 Gene3D G3DSA:3.40.50.2300 6 123 6.8E-37 T 26-04-2016 RGE_RS04450 3e8315d74019a9032b9a43dea2fb01e4 227 SMART SM00448 6 116 6.0E-40 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04450 3e8315d74019a9032b9a43dea2fb01e4 227 PANTHER PTHR26402:SF530 6 226 9.0E-101 T 26-04-2016 RGE_RS04450 3e8315d74019a9032b9a43dea2fb01e4 227 Pfam PF00072 Response regulator receiver domain 8 116 1.1E-24 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS21750 4df1fdbf3486a36d3e45fb5463f85608 189 PIRSF PIRSF015617 4 189 1.8E-58 T 26-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RGE_RS21750 4df1fdbf3486a36d3e45fb5463f85608 189 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 20 188 2.5E-55 T 26-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RGE_RS21750 4df1fdbf3486a36d3e45fb5463f85608 189 PANTHER PTHR30069 18 188 7.7E-50 T 26-04-2016 RGE_RS21750 4df1fdbf3486a36d3e45fb5463f85608 189 SUPERFAMILY SSF52540 18 188 4.0E-58 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21750 4df1fdbf3486a36d3e45fb5463f85608 189 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 18 188 1.4E-54 T 26-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RGE_RS21750 4df1fdbf3486a36d3e45fb5463f85608 189 Gene3D G3DSA:3.40.50.300 14 188 1.6E-63 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 Gene3D G3DSA:3.30.1360.120 5 127 1.8E-38 T 26-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 14 454 3.5E-91 T 26-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 274 289 1.4E-5 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 225 245 1.4E-5 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 Gene3D G3DSA:3.40.50.300 295 375 1.2E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 Gene3D G3DSA:1.20.120.430 383 454 1.4E-54 T 26-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 Gene3D G3DSA:1.20.120.430 245 277 1.4E-54 T 26-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 Gene3D G3DSA:1.20.120.430 128 188 1.4E-54 T 26-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 222 345 1.8E-16 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 PANTHER PTHR11649:SF56 11 454 3.6E-139 T 26-04-2016 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 Pfam PF01926 50S ribosome-binding GTPase 224 341 4.0E-23 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 Pfam PF12631 MnmE helical domain 129 451 9.1E-57 T 26-04-2016 IPR025867 MnmE, helical domain RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 SUPERFAMILY SSF52540 210 371 1.09E-42 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 SUPERFAMILY SSF52540 74 176 1.09E-42 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 8 454 31.636 T 26-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 PANTHER PTHR11649 11 454 3.6E-139 T 26-04-2016 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 SUPERFAMILY SSF116878 378 454 3.79E-48 T 26-04-2016 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 SUPERFAMILY SSF116878 127 226 3.79E-48 T 26-04-2016 RGE_RS22945 864e4ad22b0c3a46257a0c423cfef2dc 454 Pfam PF10396 GTP-binding protein TrmE N-terminus 9 126 1.4E-33 T 26-04-2016 IPR018948 GTP-binding protein TrmE, N-terminal RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 Gene3D G3DSA:3.40.50.150 244 437 1.0E-43 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 316 327 - T 26-04-2016 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 252 262 3.5E-26 T 26-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 220 234 3.5E-26 T 26-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 317 329 3.5E-26 T 26-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 367 383 3.5E-26 T 26-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 420 437 3.5E-26 T 26-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 Pfam PF01189 16S rRNA methyltransferase RsmB/F 249 434 3.2E-54 T 26-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 SUPERFAMILY SSF48013 19 144 5.67E-12 T 26-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 Gene3D G3DSA:3.30.70.1170 168 228 3.4E-19 T 26-04-2016 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 Gene3D G3DSA:1.10.940.10 11 143 2.9E-11 T 26-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 PANTHER PTHR22807 109 437 2.4E-78 T 26-04-2016 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 SUPERFAMILY SSF53335 136 437 1.55E-64 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 Gene3D G3DSA:1.10.287.730 144 167 4.1E-5 T 26-04-2016 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 9 437 2.3E-86 T 26-04-2016 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS21810 7afe5537e1db7a70488b63202ac1f515 438 PANTHER PTHR22807:SF30 109 437 2.4E-78 T 26-04-2016 RGE_RS13435 6d5d25ec94dcf0053a16ede1377d3f6c 232 Pfam PF04079 Segregation and condensation complex subunit ScpB 9 167 3.0E-49 T 26-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RGE_RS13435 6d5d25ec94dcf0053a16ede1377d3f6c 232 SUPERFAMILY SSF46785 1 80 1.66E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13435 6d5d25ec94dcf0053a16ede1377d3f6c 232 PANTHER PTHR34298 1 215 1.4E-60 T 26-04-2016 RGE_RS13435 6d5d25ec94dcf0053a16ede1377d3f6c 232 Gene3D G3DSA:1.10.10.10 82 158 1.2E-34 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13435 6d5d25ec94dcf0053a16ede1377d3f6c 232 PANTHER PTHR34298:SF2 1 215 1.4E-60 T 26-04-2016 RGE_RS13435 6d5d25ec94dcf0053a16ede1377d3f6c 232 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 16 168 2.5E-32 T 26-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RGE_RS13435 6d5d25ec94dcf0053a16ede1377d3f6c 232 SUPERFAMILY SSF46785 83 158 1.16E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13435 6d5d25ec94dcf0053a16ede1377d3f6c 232 Gene3D G3DSA:1.10.10.10 1 79 1.5E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 204 230 - T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 PIRSF PIRSF000770 2 236 1.5E-41 T 26-04-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 234 5.0E-32 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 Gene3D G3DSA:1.10.10.10 95 132 3.4E-7 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 Pfam PF04542 Sigma-70 region 2 14 85 3.3E-17 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 SUPERFAMILY SSF88659 87 158 3.92E-15 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 14 234 3.5E-83 T 26-04-2016 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 SUPERFAMILY SSF88946 3 85 6.93E-25 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 Pfam PF04539 Sigma-70 region 3 96 152 2.5E-10 T 26-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 Gene3D G3DSA:1.10.601.10 10 77 1.7E-15 T 26-04-2016 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 PANTHER PTHR30385 10 237 1.0E-63 T 26-04-2016 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 PRINTS PR00046 Major sigma-70 factor signature 40 53 3.5E-9 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 PRINTS PR00046 Major sigma-70 factor signature 187 199 3.5E-9 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 PRINTS PR00046 Major sigma-70 factor signature 204 219 3.5E-9 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 PRINTS PR00046 Major sigma-70 factor signature 219 230 3.5E-9 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 PANTHER PTHR30385:SF7 10 237 1.0E-63 T 26-04-2016 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 SUPERFAMILY SSF88659 148 236 9.16E-22 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 Gene3D G3DSA:1.10.10.10 172 236 4.3E-13 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 Pfam PF04545 Sigma-70, region 4 183 231 1.1E-14 T 26-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08430 8cc87dfa98210936301000f1e818eecb 237 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 2 237 62.641 T 26-04-2016 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS04430 0ae4b5f733b1aeb991e20e6903e6b630 474 SUPERFAMILY SSF56954 9 467 4.45E-100 T 26-04-2016 RGE_RS04430 0ae4b5f733b1aeb991e20e6903e6b630 474 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 15 463 1.3E-107 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS04430 0ae4b5f733b1aeb991e20e6903e6b630 474 Pfam PF02321 Outer membrane efflux protein 282 462 5.4E-29 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS04430 0ae4b5f733b1aeb991e20e6903e6b630 474 Pfam PF02321 Outer membrane efflux protein 66 254 1.8E-25 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS04430 0ae4b5f733b1aeb991e20e6903e6b630 474 PANTHER PTHR30203:SF15 3 466 5.4E-149 T 26-04-2016 RGE_RS04430 0ae4b5f733b1aeb991e20e6903e6b630 474 PANTHER PTHR30203 3 466 5.4E-149 T 26-04-2016 RGE_RS04430 0ae4b5f733b1aeb991e20e6903e6b630 474 Gene3D G3DSA:1.20.1600.10 54 467 1.7E-106 T 26-04-2016 RGE_RS00930 a92897455efee716c4534061f6531122 296 PANTHER PTHR30173:SF11 2 290 4.7E-76 T 26-04-2016 RGE_RS00930 a92897455efee716c4534061f6531122 296 Pfam PF08281 Sigma-70, region 4 108 160 1.6E-12 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS00930 a92897455efee716c4534061f6531122 296 Pfam PF04542 Sigma-70 region 2 8 72 1.1E-16 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS00930 a92897455efee716c4534061f6531122 296 SUPERFAMILY SSF54427 171 287 1.56E-14 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS00930 a92897455efee716c4534061f6531122 296 Gene3D G3DSA:1.10.10.10 105 162 6.4E-12 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00930 a92897455efee716c4534061f6531122 296 SUPERFAMILY SSF88946 3 85 5.1E-15 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS00930 a92897455efee716c4534061f6531122 296 Gene3D G3DSA:3.10.450.50 171 287 1.0E-10 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS00930 a92897455efee716c4534061f6531122 296 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 162 3.8E-18 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS00930 a92897455efee716c4534061f6531122 296 Gene3D G3DSA:1.10.1740.10 3 73 7.7E-14 T 26-04-2016 RGE_RS00930 a92897455efee716c4534061f6531122 296 PANTHER PTHR30173 2 290 4.7E-76 T 26-04-2016 RGE_RS00930 a92897455efee716c4534061f6531122 296 SUPERFAMILY SSF88659 92 164 5.05E-11 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 160 230 3.9E-15 T 26-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 SUPERFAMILY SSF54534 98 241 3.74E-29 T 26-04-2016 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 Pfam PF05697 Bacterial trigger factor protein (TF) 1 142 1.2E-37 T 26-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 PANTHER PTHR30560 1 435 1.1E-109 T 26-04-2016 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 SUPERFAMILY SSF102735 1 131 1.44E-35 T 26-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 Gene3D G3DSA:3.30.70.1050 1 118 1.1E-35 T 26-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 Gene3D G3DSA:3.10.50.40 157 217 1.8E-10 T 26-04-2016 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 264 417 3.7E-34 T 26-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 Gene3D G3DSA:1.10.3120.10 218 393 4.8E-58 T 26-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 TIGRFAM TIGR00115 tig: trigger factor 11 417 5.5E-130 T 26-04-2016 IPR005215 Trigger factor GO:0015031 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 SUPERFAMILY SSF109998 250 434 2.26E-49 T 26-04-2016 IPR027304 Trigger factor/SurA domain RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 Hamap MF_00303 Trigger factor [tig]. 1 423 20.58 T 26-04-2016 IPR005215 Trigger factor GO:0015031 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 PANTHER PTHR30560:SF3 1 435 1.1E-109 T 26-04-2016 RGE_RS13610 3148baf7c8c077e50d815a0dae81ebb8 436 PIRSF PIRSF003095 1 436 1.6E-121 T 26-04-2016 IPR005215 Trigger factor GO:0015031 RGE_RS15990 2edbbedf67ce757c224da751e20fe66a 149 SUPERFAMILY SSF46955 28 133 1.25E-23 T 26-04-2016 IPR009061 Putative DNA-binding domain RGE_RS15990 2edbbedf67ce757c224da751e20fe66a 149 SMART SM00422 29 96 2.5E-15 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS15990 2edbbedf67ce757c224da751e20fe66a 149 PANTHER PTHR30204 21 143 2.2E-18 T 26-04-2016 RGE_RS15990 2edbbedf67ce757c224da751e20fe66a 149 Gene3D G3DSA:1.10.1660.10 27 81 4.5E-21 T 26-04-2016 RGE_RS15990 2edbbedf67ce757c224da751e20fe66a 149 Gene3D G3DSA:1.10.1660.10 82 143 2.3E-11 T 26-04-2016 RGE_RS15990 2edbbedf67ce757c224da751e20fe66a 149 Pfam PF13411 MerR HTH family regulatory protein 31 94 1.1E-15 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS19795 58af7615143fd2bea11a905e3e91a54c 235 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 6 231 3.5E-104 T 26-04-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 RGE_RS19795 58af7615143fd2bea11a905e3e91a54c 235 SUPERFAMILY SSF48613 2 231 1.85E-70 T 26-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RGE_RS19795 58af7615143fd2bea11a905e3e91a54c 235 PANTHER PTHR40279:SF2 7 231 4.4E-109 T 26-04-2016 RGE_RS19795 58af7615143fd2bea11a905e3e91a54c 235 Gene3D G3DSA:1.20.910.10 2 232 1.5E-109 T 26-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RGE_RS19795 58af7615143fd2bea11a905e3e91a54c 235 PANTHER PTHR40279 7 231 4.4E-109 T 26-04-2016 RGE_RS19795 58af7615143fd2bea11a905e3e91a54c 235 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 235 127.496 T 26-04-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 RGE_RS19795 58af7615143fd2bea11a905e3e91a54c 235 Pfam PF03070 TENA/THI-4/PQQC family 12 225 1.0E-55 T 26-04-2016 IPR004305 Thiaminase-2/PQQC RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 PANTHER PTHR10799 373 566 5.5E-72 T 26-04-2016 RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 PANTHER PTHR10799 183 353 5.5E-72 T 26-04-2016 RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 Gene3D G3DSA:3.40.50.2300 22 157 3.5E-32 T 26-04-2016 RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 Gene3D G3DSA:3.20.20.450 470 715 1.8E-82 T 26-04-2016 IPR001633 EAL domain RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 Pfam PF00563 EAL domain 472 704 3.6E-61 T 26-04-2016 IPR001633 EAL domain RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 SUPERFAMILY SSF55073 283 459 5.65E-41 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 SUPERFAMILY SSF52172 21 160 6.55E-32 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 PANTHER PTHR10799:SF774 373 566 5.5E-72 T 26-04-2016 RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 PANTHER PTHR10799:SF774 183 353 5.5E-72 T 26-04-2016 RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 Pfam PF00990 Diguanylate cyclase, GGDEF domain 278 351 5.0E-20 T 26-04-2016 IPR000160 GGDEF domain RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 Pfam PF00990 Diguanylate cyclase, GGDEF domain 369 454 2.7E-17 T 26-04-2016 IPR000160 GGDEF domain RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 SUPERFAMILY SSF141868 473 716 2.88E-76 T 26-04-2016 IPR001633 EAL domain RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 SMART SM00448 22 138 1.6E-26 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 Gene3D G3DSA:3.30.70.270 280 460 5.8E-51 T 26-04-2016 RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 277 458 4.5E-34 T 26-04-2016 IPR000160 GGDEF domain RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 SMART SM00052 466 709 1.2E-88 T 26-04-2016 IPR001633 EAL domain RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 SMART SM00267 267 460 1.4E-47 T 26-04-2016 IPR000160 GGDEF domain RGE_RS08570 3d5402c0c8befa5eb638e7d7b314650a 737 Pfam PF00072 Response regulator receiver domain 24 127 5.5E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS02195 6816d34163658cb2ed7198a526d6f664 571 PIRSF PIRSF001589 53 571 2.1E-77 T 26-04-2016 RGE_RS02195 6816d34163658cb2ed7198a526d6f664 571 PANTHER PTHR11772:SF10 409 568 3.4E-53 T 26-04-2016 RGE_RS02195 6816d34163658cb2ed7198a526d6f664 571 PANTHER PTHR11772:SF10 50 323 3.4E-53 T 26-04-2016 RGE_RS02195 6816d34163658cb2ed7198a526d6f664 571 PANTHER PTHR11772 409 568 3.4E-53 T 26-04-2016 RGE_RS02195 6816d34163658cb2ed7198a526d6f664 571 PANTHER PTHR11772 50 323 3.4E-53 T 26-04-2016 RGE_RS02195 6816d34163658cb2ed7198a526d6f664 571 Pfam PF00733 Asparagine synthase 182 563 8.0E-73 T 26-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RGE_RS02195 6816d34163658cb2ed7198a526d6f664 571 Gene3D G3DSA:3.60.20.10 58 165 3.4E-19 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS02195 6816d34163658cb2ed7198a526d6f664 571 SUPERFAMILY SSF56235 51 165 1.0E-18 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS02195 6816d34163658cb2ed7198a526d6f664 571 Gene3D G3DSA:3.40.50.620 413 563 1.7E-67 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS02195 6816d34163658cb2ed7198a526d6f664 571 Gene3D G3DSA:3.40.50.620 166 318 1.7E-67 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS02195 6816d34163658cb2ed7198a526d6f664 571 SUPERFAMILY SSF52402 417 556 1.54E-62 T 26-04-2016 RGE_RS02195 6816d34163658cb2ed7198a526d6f664 571 SUPERFAMILY SSF52402 170 321 1.54E-62 T 26-04-2016 RGE_RS10420 592ec1ffb4ce6de03d22a940dfc36d20 155 SUPERFAMILY SSF46785 2 134 1.1E-35 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10420 592ec1ffb4ce6de03d22a940dfc36d20 155 PANTHER PTHR33221 2 152 1.6E-56 T 26-04-2016 RGE_RS10420 592ec1ffb4ce6de03d22a940dfc36d20 155 Pfam PF02082 Transcriptional regulator 1 81 2.2E-23 T 26-04-2016 IPR000944 Transcription regulator Rrf2-type RGE_RS10420 592ec1ffb4ce6de03d22a940dfc36d20 155 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 2.2E-31 T 26-04-2016 IPR000944 Transcription regulator Rrf2-type RGE_RS10420 592ec1ffb4ce6de03d22a940dfc36d20 155 PANTHER PTHR33221:SF4 2 152 1.6E-56 T 26-04-2016 RGE_RS10420 592ec1ffb4ce6de03d22a940dfc36d20 155 Gene3D G3DSA:1.10.10.10 1 136 4.8E-44 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13520 7bafe69d2f31b2880af612906dea1108 310 SUPERFAMILY SSF52467 187 310 2.4E-43 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS13520 7bafe69d2f31b2880af612906dea1108 310 Gene3D G3DSA:3.40.50.620 1 181 2.6E-61 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS13520 7bafe69d2f31b2880af612906dea1108 310 PANTHER PTHR10909 104 307 5.4E-116 T 26-04-2016 RGE_RS13520 7bafe69d2f31b2880af612906dea1108 310 PANTHER PTHR10909:SF294 104 307 5.4E-116 T 26-04-2016 RGE_RS13520 7bafe69d2f31b2880af612906dea1108 310 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 273 8.9E-34 T 26-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal RGE_RS13520 7bafe69d2f31b2880af612906dea1108 310 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 254 280 - T 26-04-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site RGE_RS13520 7bafe69d2f31b2880af612906dea1108 310 Gene3D G3DSA:3.40.50.1220 185 310 2.4E-57 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS13520 7bafe69d2f31b2880af612906dea1108 310 SUPERFAMILY SSF52402 3 185 6.77E-55 T 26-04-2016 RGE_RS13520 7bafe69d2f31b2880af612906dea1108 310 SMART SM00893 3 182 2.5E-57 T 26-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RGE_RS13520 7bafe69d2f31b2880af612906dea1108 310 Pfam PF01012 Electron transfer flavoprotein domain 3 169 2.2E-39 T 26-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RGE_RS13520 7bafe69d2f31b2880af612906dea1108 310 PIRSF PIRSF000089 1 310 9.0E-101 T 26-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 RGE_RS19880 5187f1c2055791aa3c9049d2fce3db0a 324 SMART SM00387 221 313 4.8E-10 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19880 5187f1c2055791aa3c9049d2fce3db0a 324 PANTHER PTHR24421:SF1 12 22 7.4E-40 T 26-04-2016 RGE_RS19880 5187f1c2055791aa3c9049d2fce3db0a 324 PANTHER PTHR24421:SF1 109 324 7.4E-40 T 26-04-2016 RGE_RS19880 5187f1c2055791aa3c9049d2fce3db0a 324 PANTHER PTHR24421 12 22 7.4E-40 T 26-04-2016 RGE_RS19880 5187f1c2055791aa3c9049d2fce3db0a 324 PANTHER PTHR24421 109 324 7.4E-40 T 26-04-2016 RGE_RS19880 5187f1c2055791aa3c9049d2fce3db0a 324 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 226 312 6.1E-7 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19880 5187f1c2055791aa3c9049d2fce3db0a 324 PRINTS PR00344 Bacterial sensor protein C-terminal signature 297 310 4.2E-7 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19880 5187f1c2055791aa3c9049d2fce3db0a 324 PRINTS PR00344 Bacterial sensor protein C-terminal signature 257 271 4.2E-7 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19880 5187f1c2055791aa3c9049d2fce3db0a 324 PRINTS PR00344 Bacterial sensor protein C-terminal signature 273 291 4.2E-7 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19880 5187f1c2055791aa3c9049d2fce3db0a 324 Gene3D G3DSA:3.30.565.10 225 313 2.7E-10 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19880 5187f1c2055791aa3c9049d2fce3db0a 324 SUPERFAMILY SSF55874 199 311 7.99E-19 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19880 5187f1c2055791aa3c9049d2fce3db0a 324 Pfam PF07730 Histidine kinase 114 181 8.0E-10 T 26-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RGE_RS00115 c49b0edded08bec67f54a14ceaba367b 169 PANTHER PTHR35561 6 169 1.6E-27 T 26-04-2016 RGE_RS00115 c49b0edded08bec67f54a14ceaba367b 169 Pfam PF13563 2'-5' RNA ligase superfamily 38 135 1.8E-10 T 26-04-2016 RGE_RS00115 c49b0edded08bec67f54a14ceaba367b 169 Gene3D G3DSA:3.90.1140.10 8 167 3.7E-34 T 26-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase RGE_RS00115 c49b0edded08bec67f54a14ceaba367b 169 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 8 156 6.3E-23 T 26-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 RGE_RS00115 c49b0edded08bec67f54a14ceaba367b 169 PANTHER PTHR35561:SF1 6 169 1.6E-27 T 26-04-2016 RGE_RS00115 c49b0edded08bec67f54a14ceaba367b 169 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 7 168 16.123 T 26-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 RGE_RS00115 c49b0edded08bec67f54a14ceaba367b 169 SUPERFAMILY SSF55144 8 167 1.34E-31 T 26-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase RGE_RS11030 52f9213cf94245000effe62b9d55cd15 386 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 232 341 5.8E-7 T 26-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS11030 52f9213cf94245000effe62b9d55cd15 386 PANTHER PTHR21015:SF21 85 382 1.7E-31 T 26-04-2016 RGE_RS11030 52f9213cf94245000effe62b9d55cd15 386 Gene3D G3DSA:3.40.50.2000 179 345 1.8E-20 T 26-04-2016 RGE_RS11030 52f9213cf94245000effe62b9d55cd15 386 SUPERFAMILY SSF53756 54 369 6.06E-25 T 26-04-2016 RGE_RS11030 52f9213cf94245000effe62b9d55cd15 386 PANTHER PTHR21015 85 382 1.7E-31 T 26-04-2016 RGE_RS09445 c523dd090b81078d2fa51ce750f34bf6 566 SUPERFAMILY SSF55073 406 561 1.02E-45 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS09445 c523dd090b81078d2fa51ce750f34bf6 566 Pfam PF00990 Diguanylate cyclase, GGDEF domain 401 555 2.4E-43 T 26-04-2016 IPR000160 GGDEF domain RGE_RS09445 c523dd090b81078d2fa51ce750f34bf6 566 Gene3D G3DSA:3.30.70.270 403 563 8.1E-52 T 26-04-2016 RGE_RS09445 c523dd090b81078d2fa51ce750f34bf6 566 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 397 558 1.2E-46 T 26-04-2016 IPR000160 GGDEF domain RGE_RS09445 c523dd090b81078d2fa51ce750f34bf6 566 SMART SM00267 390 560 6.6E-63 T 26-04-2016 IPR000160 GGDEF domain RGE_RS09445 c523dd090b81078d2fa51ce750f34bf6 566 PANTHER PTHR10799 290 555 2.0E-30 T 26-04-2016 RGE_RS09445 c523dd090b81078d2fa51ce750f34bf6 566 Gene3D G3DSA:3.30.450.20 95 194 1.8E-13 T 26-04-2016 RGE_RS09445 c523dd090b81078d2fa51ce750f34bf6 566 SMART SM00304 317 370 0.0011 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS09445 c523dd090b81078d2fa51ce750f34bf6 566 Pfam PF00672 HAMP domain 297 365 1.4E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS09445 c523dd090b81078d2fa51ce750f34bf6 566 Pfam PF02743 Cache domain 51 279 5.0E-14 T 26-04-2016 IPR033479 Double Cache domain 1 RGE_RS09445 c523dd090b81078d2fa51ce750f34bf6 566 PANTHER PTHR10799:SF750 290 555 2.0E-30 T 26-04-2016 RGE_RS18025 b30ce29684d9a961bf75a99f9c52e762 211 Gene3D G3DSA:1.10.760.10 104 199 6.8E-20 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS18025 b30ce29684d9a961bf75a99f9c52e762 211 Gene3D G3DSA:1.10.760.10 8 102 3.8E-22 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS18025 b30ce29684d9a961bf75a99f9c52e762 211 PIRSF PIRSF000005 1 200 4.1E-35 T 26-04-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 RGE_RS18025 b30ce29684d9a961bf75a99f9c52e762 211 PANTHER PTHR33751 1 205 1.4E-27 T 26-04-2016 RGE_RS18025 b30ce29684d9a961bf75a99f9c52e762 211 SUPERFAMILY SSF46626 10 102 1.17E-17 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS18025 b30ce29684d9a961bf75a99f9c52e762 211 SUPERFAMILY SSF46626 125 201 6.3E-15 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 Gene3D G3DSA:3.30.559.10 181 417 3.7E-89 T 26-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 419 1.3E-164 T 26-04-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 SUPERFAMILY SSF51230 2 97 1.28E-26 T 26-04-2016 IPR011053 Single hybrid motif RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 Gene3D G3DSA:4.10.320.10 115 161 2.5E-13 T 26-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 PANTHER PTHR23151 173 420 4.9E-210 T 26-04-2016 RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 PANTHER PTHR23151 3 157 4.9E-210 T 26-04-2016 RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 Gene3D G3DSA:2.40.50.100 2 97 1.7E-28 T 26-04-2016 RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 26-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 SUPERFAMILY SSF52777 190 419 1.38E-85 T 26-04-2016 RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 PANTHER PTHR23151:SF47 173 420 4.9E-210 T 26-04-2016 RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 PANTHER PTHR23151:SF47 3 157 4.9E-210 T 26-04-2016 RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 189 417 2.1E-78 T 26-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 SUPERFAMILY SSF47005 110 153 1.44E-8 T 26-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 Pfam PF00364 Biotin-requiring enzyme 5 77 3.2E-21 T 26-04-2016 IPR000089 Biotin/lipoyl attachment RGE_RS13495 80316bb7940257fa57834107d8415c6a 420 Pfam PF02817 e3 binding domain 117 150 1.1E-9 T 26-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RGE_RS18690 ce4effa016c30387f900adf8ebd5fac1 112 Pfam PF07978 NIPSNAP 6 100 3.3E-25 T 26-04-2016 IPR012577 NIPSNAP RGE_RS18690 ce4effa016c30387f900adf8ebd5fac1 112 SUPERFAMILY SSF54909 2 100 1.61E-22 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS22535 718050c693f98487859b2c9c23a8ed42 205 Pfam PF00313 'Cold-shock' DNA-binding domain 8 66 7.7E-10 T 26-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RGE_RS22535 718050c693f98487859b2c9c23a8ed42 205 SUPERFAMILY SSF50249 2 66 1.64E-12 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS22535 718050c693f98487859b2c9c23a8ed42 205 PANTHER PTHR12962 108 189 1.5E-29 T 26-04-2016 RGE_RS22535 718050c693f98487859b2c9c23a8ed42 205 PANTHER PTHR12962:SF1 108 189 1.5E-29 T 26-04-2016 RGE_RS22535 718050c693f98487859b2c9c23a8ed42 205 Gene3D G3DSA:2.40.50.140 3 69 3.7E-17 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS22535 718050c693f98487859b2c9c23a8ed42 205 Pfam PF06961 Protein of unknown function (DUF1294) 120 174 2.0E-23 T 26-04-2016 IPR010718 Protein of unknown function DUF1294 RGE_RS22535 718050c693f98487859b2c9c23a8ed42 205 SMART SM00357 4 67 0.0011 T 26-04-2016 IPR011129 Cold shock protein GO:0003676 RGE_RS16110 0c8ce2b7411daeeadfd44e3155256c98 109 PRINTS PR00421 Thioredoxin family signature 33 42 7.4E-10 T 26-04-2016 RGE_RS16110 0c8ce2b7411daeeadfd44e3155256c98 109 PRINTS PR00421 Thioredoxin family signature 25 33 7.4E-10 T 26-04-2016 RGE_RS16110 0c8ce2b7411daeeadfd44e3155256c98 109 PRINTS PR00421 Thioredoxin family signature 73 84 7.4E-10 T 26-04-2016 RGE_RS16110 0c8ce2b7411daeeadfd44e3155256c98 109 PIRSF PIRSF000077 3 109 4.7E-44 T 26-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RGE_RS16110 0c8ce2b7411daeeadfd44e3155256c98 109 PANTHER PTHR10438 1 109 9.1E-41 T 26-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RGE_RS16110 0c8ce2b7411daeeadfd44e3155256c98 109 Pfam PF00085 Thioredoxin 6 108 3.6E-35 T 26-04-2016 IPR013766 Thioredoxin domain GO:0045454 RGE_RS16110 0c8ce2b7411daeeadfd44e3155256c98 109 TIGRFAM TIGR01068 thioredoxin: thioredoxin 10 108 2.5E-38 T 26-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RGE_RS16110 0c8ce2b7411daeeadfd44e3155256c98 109 ProSitePatterns PS00194 Thioredoxin family active site. 26 44 - T 26-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RGE_RS16110 0c8ce2b7411daeeadfd44e3155256c98 109 Gene3D G3DSA:3.40.30.10 4 109 1.7E-39 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS16110 0c8ce2b7411daeeadfd44e3155256c98 109 SUPERFAMILY SSF52833 6 109 4.59E-41 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 14 519 4.8E-70 T 26-04-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 SUPERFAMILY SSF69255 418 514 5.49E-27 T 26-04-2016 RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 588 694 3.3E-36 T 26-04-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 13 518 1.8E-85 T 26-04-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 754 913 2.9E-44 T 26-04-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 Gene3D G3DSA:3.55.50.10 90 195 9.1E-24 T 26-04-2016 RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 SUPERFAMILY SSF69279 390 407 5.95E-13 T 26-04-2016 RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 SUPERFAMILY SSF69279 217 362 5.95E-13 T 26-04-2016 RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 PANTHER PTHR32305 826 892 2.3E-49 T 26-04-2016 RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 Pfam PF05954 Phage late control gene D protein (GPD) 21 361 4.8E-70 T 26-04-2016 RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 PANTHER PTHR32305 13 808 2.3E-49 T 26-04-2016 RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 SUPERFAMILY SSF69279 8 190 7.37E-39 T 26-04-2016 RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 Gene3D G3DSA:2.40.50.230 425 514 1.7E-31 T 26-04-2016 IPR006531 Gp5 N-terminal RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 PANTHER PTHR32305:SF7 13 808 2.3E-49 T 26-04-2016 RGE_RS12610 218e65bc3e9fd68474fe4f60327fe818 922 PANTHER PTHR32305:SF7 826 892 2.3E-49 T 26-04-2016 RGE_RS02720 d33ff8f73911c67039c80d3059237946 251 SUPERFAMILY SSF46785 19 103 1.36E-17 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02720 d33ff8f73911c67039c80d3059237946 251 SMART SM00895 95 219 2.7E-16 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS02720 d33ff8f73911c67039c80d3059237946 251 PANTHER PTHR11751 25 111 8.6E-19 T 26-04-2016 RGE_RS02720 d33ff8f73911c67039c80d3059237946 251 SMART SM00345 27 85 5.0E-16 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS02720 d33ff8f73911c67039c80d3059237946 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 85 1.1E-16 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS02720 d33ff8f73911c67039c80d3059237946 251 SUPERFAMILY SSF48008 93 222 4.18E-27 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS02720 d33ff8f73911c67039c80d3059237946 251 PANTHER PTHR11751:SF362 25 111 8.6E-19 T 26-04-2016 RGE_RS02720 d33ff8f73911c67039c80d3059237946 251 Gene3D G3DSA:1.10.10.10 16 86 3.1E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02720 d33ff8f73911c67039c80d3059237946 251 Pfam PF07729 FCD domain 95 218 9.2E-26 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS02720 d33ff8f73911c67039c80d3059237946 251 Gene3D G3DSA:1.20.120.530 92 229 3.7E-28 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS05375 6e2a49b57b9d11a1f8676cc714472773 149 PANTHER PTHR22769 6 139 3.3E-19 T 26-04-2016 RGE_RS05375 6e2a49b57b9d11a1f8676cc714472773 149 PANTHER PTHR22769:SF28 6 139 3.3E-19 T 26-04-2016 RGE_RS05375 6e2a49b57b9d11a1f8676cc714472773 149 Gene3D G3DSA:3.90.79.10 3 142 5.8E-30 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS05375 6e2a49b57b9d11a1f8676cc714472773 149 PRINTS PR01404 DATP pyrophosphohydrolase signature 126 139 7.9E-6 T 26-04-2016 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 RGE_RS05375 6e2a49b57b9d11a1f8676cc714472773 149 PRINTS PR01404 DATP pyrophosphohydrolase signature 5 22 7.9E-6 T 26-04-2016 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 RGE_RS05375 6e2a49b57b9d11a1f8676cc714472773 149 PRINTS PR01404 DATP pyrophosphohydrolase signature 69 88 7.9E-6 T 26-04-2016 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 RGE_RS05375 6e2a49b57b9d11a1f8676cc714472773 149 SUPERFAMILY SSF55811 6 145 2.57E-29 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS05375 6e2a49b57b9d11a1f8676cc714472773 149 Pfam PF00293 NUDIX domain 8 138 3.3E-18 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS11370 810458837c1cca0944bea607c239b356 304 SUPERFAMILY SSF53300 84 153 7.91E-5 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS11370 810458837c1cca0944bea607c239b356 304 PANTHER PTHR33608 1 304 6.5E-12 T 26-04-2016 RGE_RS14980 5bf4c04aebd9255009bbe6022918948d 412 TIGRFAM TIGR00843 benE: benzoate transporter 19 389 1.4E-113 T 26-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 RGE_RS14980 5bf4c04aebd9255009bbe6022918948d 412 PANTHER PTHR30199 18 400 1.1E-127 T 26-04-2016 RGE_RS14980 5bf4c04aebd9255009bbe6022918948d 412 Pfam PF03594 Benzoate membrane transport protein 19 389 9.0E-131 T 26-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 RGE_RS14980 5bf4c04aebd9255009bbe6022918948d 412 PANTHER PTHR30199:SF0 18 400 1.1E-127 T 26-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 RGE_RS09175 d48dd592a846dc05bd70d61973010172 247 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 3 241 1.2E-71 T 26-04-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 RGE_RS09175 d48dd592a846dc05bd70d61973010172 247 PANTHER PTHR36925 1 247 3.3E-74 T 26-04-2016 RGE_RS09175 d48dd592a846dc05bd70d61973010172 247 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 2 241 8.6E-49 T 26-04-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 PIRSF PIRSF000774 1 476 3.5E-163 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 Pfam PF04963 Sigma-54 factor, core binding domain 112 303 1.4E-55 T 26-04-2016 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 11 473 1.2E-129 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 Gene3D G3DSA:1.10.260.40 364 387 9.9E-4 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 454 461 - T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 PANTHER PTHR32248 1 476 3.6E-128 T 26-04-2016 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 363 382 - T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 PANTHER PTHR32248:SF4 1 476 3.6E-128 T 26-04-2016 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 PRINTS PR00045 Sigma-54 factor signature 391 402 5.2E-27 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 PRINTS PR00045 Sigma-54 factor signature 449 467 5.2E-27 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 PRINTS PR00045 Sigma-54 factor signature 375 387 5.2E-27 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 PRINTS PR00045 Sigma-54 factor signature 187 204 5.2E-27 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 Pfam PF04552 Sigma-54, DNA binding domain 318 474 3.4E-60 T 26-04-2016 IPR007634 RNA polymerase sigma factor 54, DNA-binding RGE_RS12255 90da05cdbeeae354b9f22979d6f1e542 476 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 8 49 3.7E-11 T 26-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RGE_RS04580 ff1cedbbfd3545d151ab6e19c122f96a 245 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 33 131 1.6E-18 T 26-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RGE_RS04580 ff1cedbbfd3545d151ab6e19c122f96a 245 SUPERFAMILY SSF161098 33 222 2.09E-38 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS04580 ff1cedbbfd3545d151ab6e19c122f96a 245 Gene3D G3DSA:1.10.3720.10 32 237 4.7E-39 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS04580 ff1cedbbfd3545d151ab6e19c122f96a 245 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 53 237 8.9E-14 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS04580 ff1cedbbfd3545d151ab6e19c122f96a 245 PANTHER PTHR30085 3 243 4.6E-75 T 26-04-2016 RGE_RS04580 ff1cedbbfd3545d151ab6e19c122f96a 245 PANTHER PTHR30085:SF4 3 243 4.6E-75 T 26-04-2016 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ GO:0006865|GO:0016021|GO:0043190 RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 PANTHER PTHR11908:SF79 141 728 1.6E-194 T 26-04-2016 RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 SUPERFAMILY SSF56003 341 733 1.01E-107 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 Gene3D G3DSA:3.90.1170.50 197 306 1.6E-18 T 26-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 SMART SM01008 230 308 5.5E-20 T 26-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 Gene3D G3DSA:3.30.365.10 567 733 2.0E-36 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 PANTHER PTHR11908 141 728 1.6E-194 T 26-04-2016 RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 PIRSF PIRSF036389 9 740 6.4E-243 T 26-04-2016 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 341 571 6.2E-30 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 54 211 9.4E-14 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 610 687 1.5E-12 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 SUPERFAMILY SSF56003 30 263 3.45E-40 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 Gene3D G3DSA:3.30.365.10 64 195 1.9E-36 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS11325 5fd9a699bb6d435ad5dde55e61e404a6 740 Gene3D G3DSA:3.30.365.10 403 566 3.0E-32 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS06155 98070f26896a4d9fead0f417035852bf 165 PANTHER PTHR36926:SF1 3 156 1.3E-29 T 26-04-2016 RGE_RS06155 98070f26896a4d9fead0f417035852bf 165 Pfam PF02674 Colicin V production protein 7 145 1.5E-30 T 26-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 RGE_RS06155 98070f26896a4d9fead0f417035852bf 165 PANTHER PTHR36926 3 156 1.3E-29 T 26-04-2016 RGE_RS15875 18b6bf1429af6d1a083aeef76c400bbf 127 Gene3D G3DSA:3.40.1230.10 1 122 1.4E-38 T 26-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RGE_RS15875 18b6bf1429af6d1a083aeef76c400bbf 127 PANTHER PTHR21192:SF3 4 125 4.7E-26 T 26-04-2016 RGE_RS15875 18b6bf1429af6d1a083aeef76c400bbf 127 PANTHER PTHR21192 4 125 4.7E-26 T 26-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RGE_RS15875 18b6bf1429af6d1a083aeef76c400bbf 127 SUPERFAMILY SSF64076 1 122 1.01E-34 T 26-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RGE_RS15875 18b6bf1429af6d1a083aeef76c400bbf 127 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 14 120 1.7E-27 T 26-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RGE_RS06305 251c5251e72e5ba0aa89dfb0f104b252 348 PANTHER PTHR10625:SF121 103 332 1.5E-82 T 26-04-2016 RGE_RS06305 251c5251e72e5ba0aa89dfb0f104b252 348 PANTHER PTHR10625:SF121 1 75 1.5E-82 T 26-04-2016 RGE_RS06305 251c5251e72e5ba0aa89dfb0f104b252 348 Pfam PF00850 Histone deacetylase domain 28 341 1.3E-62 T 26-04-2016 IPR023801 Histone deacetylase domain RGE_RS06305 251c5251e72e5ba0aa89dfb0f104b252 348 PANTHER PTHR10625 103 332 1.5E-82 T 26-04-2016 IPR000286 Histone deacetylase superfamily RGE_RS06305 251c5251e72e5ba0aa89dfb0f104b252 348 PANTHER PTHR10625 1 75 1.5E-82 T 26-04-2016 IPR000286 Histone deacetylase superfamily RGE_RS06305 251c5251e72e5ba0aa89dfb0f104b252 348 Gene3D G3DSA:3.40.800.20 6 342 2.0E-70 T 26-04-2016 IPR023801 Histone deacetylase domain RGE_RS06305 251c5251e72e5ba0aa89dfb0f104b252 348 SUPERFAMILY SSF52768 2 343 1.68E-82 T 26-04-2016 RGE_RS06305 251c5251e72e5ba0aa89dfb0f104b252 348 PRINTS PR01270 Histone deacetylase superfamily signature 278 288 1.7E-13 T 26-04-2016 IPR000286 Histone deacetylase superfamily RGE_RS06305 251c5251e72e5ba0aa89dfb0f104b252 348 PRINTS PR01270 Histone deacetylase superfamily signature 192 207 1.7E-13 T 26-04-2016 IPR000286 Histone deacetylase superfamily RGE_RS06305 251c5251e72e5ba0aa89dfb0f104b252 348 PRINTS PR01270 Histone deacetylase superfamily signature 159 182 1.7E-13 T 26-04-2016 IPR000286 Histone deacetylase superfamily RGE_RS17655 220499ebcce210eff4f5588ae7d6ef51 136 PANTHER PTHR37465 3 110 3.2E-12 T 26-04-2016 RGE_RS17655 220499ebcce210eff4f5588ae7d6ef51 136 Pfam PF05488 PAAR motif 9 79 7.7E-19 T 26-04-2016 IPR008727 PAAR motif RGE_RS17655 220499ebcce210eff4f5588ae7d6ef51 136 PANTHER PTHR37465:SF1 3 110 3.2E-12 T 26-04-2016 RGE_RS10075 f7f44bf330748c2c2034cb3abc8b193b 133 Gene3D G3DSA:1.20.1260.10 3 132 7.2E-8 T 26-04-2016 IPR012347 Ferritin-related RGE_RS10075 f7f44bf330748c2c2034cb3abc8b193b 133 SUPERFAMILY SSF47240 7 122 3.08E-6 T 26-04-2016 IPR009078 Ferritin-like superfamily RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 83 106 - T 26-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 Pfam PF05199 GMC oxidoreductase 388 525 3.5E-37 T 26-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 PANTHER PTHR11552:SF51 4 550 1.3E-210 T 26-04-2016 RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 PIRSF PIRSF000137 1 540 1.8E-152 T 26-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 SUPERFAMILY SSF54373 291 475 1.28E-55 T 26-04-2016 RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 PANTHER PTHR11552 4 550 1.3E-210 T 26-04-2016 RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 255 269 - T 26-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 Pfam PF00732 GMC oxidoreductase 7 296 7.8E-92 T 26-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 Gene3D G3DSA:3.50.50.60 188 314 1.2E-125 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 Gene3D G3DSA:3.50.50.60 4 127 1.2E-125 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 Gene3D G3DSA:3.50.50.60 468 533 1.2E-125 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 SUPERFAMILY SSF51905 4 289 1.07E-90 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS12345 d4c44658dadb9885aa253396d34070a3 556 SUPERFAMILY SSF51905 474 533 1.07E-90 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 Gene3D G3DSA:1.10.8.60 313 384 1.4E-20 T 26-04-2016 RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 Gene3D G3DSA:3.30.450.20 16 122 1.0E-7 T 26-04-2016 RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 425 445 3.8E-5 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 408 425 3.8E-5 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 Pfam PF08448 PAS fold 22 124 1.3E-10 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 SUPERFAMILY SSF55785 17 122 8.57E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 Gene3D G3DSA:1.10.10.60 400 441 1.3E-11 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 SMART SM00382 160 303 2.4E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 26-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 Pfam PF00158 Sigma-54 interaction domain 140 306 1.2E-66 T 26-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 Gene3D G3DSA:3.40.50.300 137 312 2.3E-58 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 PANTHER PTHR32071 102 442 2.0E-132 T 26-04-2016 RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 26-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 SUPERFAMILY SSF52540 139 381 2.6E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 26-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 Pfam PF02954 Bacterial regulatory protein, Fis family 401 442 9.3E-10 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS10440 f906a6eb4cc9bc46cca0e68f30a8b264 450 SUPERFAMILY SSF46689 351 443 3.3E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04260 b813d5183ec16dc603160a1f830d8e4d 213 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 3 187 2.7E-55 T 26-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RGE_RS04260 b813d5183ec16dc603160a1f830d8e4d 213 Pfam PF01195 Peptidyl-tRNA hydrolase 4 185 9.6E-54 T 26-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RGE_RS04260 b813d5183ec16dc603160a1f830d8e4d 213 SUPERFAMILY SSF53178 1 187 3.14E-65 T 26-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RGE_RS04260 b813d5183ec16dc603160a1f830d8e4d 213 Gene3D G3DSA:3.40.50.1470 2 188 2.4E-67 T 26-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RGE_RS04260 b813d5183ec16dc603160a1f830d8e4d 213 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 109 119 - T 26-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RGE_RS04260 b813d5183ec16dc603160a1f830d8e4d 213 PANTHER PTHR17224 4 197 3.1E-72 T 26-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RGE_RS04260 b813d5183ec16dc603160a1f830d8e4d 213 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 2 180 33.384 T 26-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RGE_RS04260 b813d5183ec16dc603160a1f830d8e4d 213 PANTHER PTHR17224:SF1 4 197 3.1E-72 T 26-04-2016 RGE_RS12670 4c9982309be874bfb0e2b766df7e1814 264 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 256 1.3E-81 T 26-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 RGE_RS12670 4c9982309be874bfb0e2b766df7e1814 264 Gene3D G3DSA:3.20.20.140 1 258 1.6E-86 T 26-04-2016 RGE_RS12670 4c9982309be874bfb0e2b766df7e1814 264 SUPERFAMILY SSF51556 1 258 1.06E-84 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS12670 4c9982309be874bfb0e2b766df7e1814 264 PANTHER PTHR10060 1 259 1.8E-111 T 26-04-2016 IPR001130 TatD family GO:0016788 RGE_RS12670 4c9982309be874bfb0e2b766df7e1814 264 Pfam PF01026 TatD related DNase 3 255 5.2E-74 T 26-04-2016 IPR001130 TatD family GO:0016788 RGE_RS12670 4c9982309be874bfb0e2b766df7e1814 264 PANTHER PTHR10060:SF20 1 259 1.8E-111 T 26-04-2016 RGE_RS12670 4c9982309be874bfb0e2b766df7e1814 264 PIRSF PIRSF005902 1 259 6.1E-75 T 26-04-2016 IPR001130 TatD family GO:0016788 RGE_RS12100 4376417c2501d099887fca9e0ab3b6a3 610 Pfam PF16861 Carbamoyltransferase C-terminus 429 601 1.2E-68 T 26-04-2016 IPR031730 Carbamoyltransferase, C-terminal RGE_RS12100 4376417c2501d099887fca9e0ab3b6a3 610 SUPERFAMILY SSF53067 156 360 5.18E-16 T 26-04-2016 RGE_RS12100 4376417c2501d099887fca9e0ab3b6a3 610 SUPERFAMILY SSF53067 1 87 5.18E-16 T 26-04-2016 RGE_RS12100 4376417c2501d099887fca9e0ab3b6a3 610 Pfam PF02543 Carbamoyltransferase N-terminus 4 358 1.3E-64 T 26-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 RGE_RS12100 4376417c2501d099887fca9e0ab3b6a3 610 PANTHER PTHR34847 382 606 3.8E-107 T 26-04-2016 RGE_RS12100 4376417c2501d099887fca9e0ab3b6a3 610 PANTHER PTHR34847 1 364 3.8E-107 T 26-04-2016 RGE_RS13705 b1372f930cb3c77794a4ae0388c05011 200 Pfam PF03641 Possible lysine decarboxylase 54 183 6.3E-45 T 26-04-2016 IPR031100 LOG family RGE_RS13705 b1372f930cb3c77794a4ae0388c05011 200 PANTHER PTHR31223:SF0 11 186 2.6E-83 T 26-04-2016 RGE_RS13705 b1372f930cb3c77794a4ae0388c05011 200 SUPERFAMILY SSF102405 9 185 8.09E-64 T 26-04-2016 RGE_RS13705 b1372f930cb3c77794a4ae0388c05011 200 Gene3D G3DSA:3.40.50.450 12 191 2.3E-74 T 26-04-2016 RGE_RS13705 b1372f930cb3c77794a4ae0388c05011 200 PANTHER PTHR31223 11 186 2.6E-83 T 26-04-2016 RGE_RS13705 b1372f930cb3c77794a4ae0388c05011 200 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 11 184 2.4E-67 T 26-04-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 38 297 1.0E-82 T 26-04-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III UniPathway: UPA00705 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 40 86 5.2E-24 T 26-04-2016 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal UniPathway: UPA00705 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 PANTHER PTHR33751:SF1 28 302 2.5E-81 T 26-04-2016 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 SUPERFAMILY SSF46626 59 82 2.76E-32 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 SUPERFAMILY SSF46626 110 215 2.76E-32 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 PANTHER PTHR33751 28 302 2.5E-81 T 26-04-2016 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 PRINTS PR00605 Class IC cytochrome C signature 270 292 2.2E-5 T 26-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 PRINTS PR00605 Class IC cytochrome C signature 140 151 2.2E-5 T 26-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 PIRSF PIRSF000006 5 299 6.6E-95 T 26-04-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III UniPathway: UPA00705 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 Gene3D G3DSA:1.10.760.10 221 298 7.6E-21 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 130 205 3.9E-14 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 227 292 1.7E-9 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 SUPERFAMILY SSF46626 221 297 2.07E-17 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 Gene3D G3DSA:1.10.760.10 125 220 3.5E-32 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS15525 7608403bd70ac1abc6f9d2160e1e069a 304 Gene3D G3DSA:1.10.760.10 65 86 3.5E-32 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14930 b5dbdb13b6300a8ac7e419a708c02e0e 302 Gene3D G3DSA:3.40.50.1820 35 293 2.2E-74 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS14930 b5dbdb13b6300a8ac7e419a708c02e0e 302 SUPERFAMILY SSF53474 26 293 1.82E-59 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS14930 b5dbdb13b6300a8ac7e419a708c02e0e 302 PANTHER PTHR10907 46 204 5.3E-41 T 26-04-2016 RGE_RS14930 b5dbdb13b6300a8ac7e419a708c02e0e 302 PANTHER PTHR10907:SF60 46 204 5.3E-41 T 26-04-2016 RGE_RS14930 b5dbdb13b6300a8ac7e419a708c02e0e 302 Pfam PF00756 Putative esterase 41 289 1.0E-22 T 26-04-2016 IPR000801 Putative esterase RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 Pfam PF01380 SIS domain 454 576 1.5E-14 T 26-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 Pfam PF02685 Glucokinase 9 318 3.0E-104 T 26-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 SUPERFAMILY SSF46689 332 405 6.45E-18 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 SUPERFAMILY SSF53067 11 320 2.83E-57 T 26-04-2016 RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 Gene3D G3DSA:3.40.367.20 106 303 2.8E-72 T 26-04-2016 RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 PANTHER PTHR30514 9 324 1.4E-76 T 26-04-2016 RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 Gene3D G3DSA:3.40.50.10490 434 589 1.7E-34 T 26-04-2016 RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 Pfam PF01418 Helix-turn-helix domain, rpiR family 332 403 1.0E-18 T 26-04-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 TIGRFAM TIGR00749 glk: glucokinase 9 313 3.6E-92 T 26-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 PANTHER PTHR30514:SF0 9 324 1.4E-76 T 26-04-2016 RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 SUPERFAMILY SSF53697 425 588 1.76E-34 T 26-04-2016 RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 Gene3D G3DSA:1.10.10.10 330 408 1.7E-26 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01245 ee27e740b6a9409f5a3e1dbf496ac763 636 ProSitePatterns PS00356 LacI-type HTH domain signature. 366 384 - T 26-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RGE_RS16460 2e9a9723de96e8e5c16e9e95e396ec19 450 PIRSF PIRSF000167 33 448 2.8E-100 T 26-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 RGE_RS16460 2e9a9723de96e8e5c16e9e95e396ec19 450 Pfam PF04055 Radical SAM superfamily 61 230 5.8E-10 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS16460 2e9a9723de96e8e5c16e9e95e396ec19 450 PANTHER PTHR13932 40 445 7.2E-83 T 26-04-2016 RGE_RS16460 2e9a9723de96e8e5c16e9e95e396ec19 450 SUPERFAMILY SSF102114 43 435 8.76E-80 T 26-04-2016 RGE_RS16460 2e9a9723de96e8e5c16e9e95e396ec19 450 PANTHER PTHR13932:SF6 40 445 7.2E-83 T 26-04-2016 RGE_RS16460 2e9a9723de96e8e5c16e9e95e396ec19 450 Gene3D G3DSA:3.80.30.20 75 249 6.2E-18 T 26-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RGE_RS16460 2e9a9723de96e8e5c16e9e95e396ec19 450 SMART SM00729 54 275 2.5E-39 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS14670 64577a4dd9b4e4bd3d6dbac4808df592 131 PANTHER PTHR33337:SF14 6 122 1.2E-26 T 26-04-2016 RGE_RS14670 64577a4dd9b4e4bd3d6dbac4808df592 131 Gene3D G3DSA:3.90.1590.10 2 129 1.0E-32 T 26-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RGE_RS14670 64577a4dd9b4e4bd3d6dbac4808df592 131 SUPERFAMILY SSF51316 2 130 2.93E-36 T 26-04-2016 IPR011057 Mss4-like RGE_RS14670 64577a4dd9b4e4bd3d6dbac4808df592 131 PANTHER PTHR33337 6 122 1.2E-26 T 26-04-2016 RGE_RS14670 64577a4dd9b4e4bd3d6dbac4808df592 131 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 115 3.3E-20 T 26-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RGE_RS22860 b374ffd5630f058d2a6c757793ee34e1 363 Gene3D G3DSA:2.40.30.10 282 361 4.3E-27 T 26-04-2016 RGE_RS22860 b374ffd5630f058d2a6c757793ee34e1 363 PANTHER PTHR11933 1 360 1.1E-181 T 26-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RGE_RS22860 b374ffd5630f058d2a6c757793ee34e1 363 PANTHER PTHR11933:SF10 1 360 1.1E-181 T 26-04-2016 RGE_RS22860 b374ffd5630f058d2a6c757793ee34e1 363 Gene3D G3DSA:3.40.50.620 2 209 8.5E-96 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS22860 b374ffd5630f058d2a6c757793ee34e1 363 Pfam PF03054 tRNA methyl transferase 6 358 1.5E-129 T 26-04-2016 RGE_RS22860 b374ffd5630f058d2a6c757793ee34e1 363 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 5 359 38.776 T 26-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RGE_RS22860 b374ffd5630f058d2a6c757793ee34e1 363 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 6 358 4.7E-128 T 26-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RGE_RS22860 b374ffd5630f058d2a6c757793ee34e1 363 Gene3D G3DSA:2.30.30.280 211 281 6.4E-31 T 26-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 RGE_RS22860 b374ffd5630f058d2a6c757793ee34e1 363 SUPERFAMILY SSF52402 1 242 6.4E-57 T 26-04-2016 RGE_RS22170 353fae81db103d2ecff4db2a7d51710b 194 Gene3D G3DSA:3.40.50.150 10 173 2.0E-27 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS22170 353fae81db103d2ecff4db2a7d51710b 194 Pfam PF07021 Methionine biosynthesis protein MetW 4 190 4.5E-67 T 26-04-2016 IPR010743 Methionine biosynthesis MetW RGE_RS22170 353fae81db103d2ecff4db2a7d51710b 194 PANTHER PTHR10108:SF831 1 169 7.5E-44 T 26-04-2016 RGE_RS22170 353fae81db103d2ecff4db2a7d51710b 194 SUPERFAMILY SSF53335 8 174 1.18E-28 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS22170 353fae81db103d2ecff4db2a7d51710b 194 PANTHER PTHR10108 1 169 7.5E-44 T 26-04-2016 RGE_RS22170 353fae81db103d2ecff4db2a7d51710b 194 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 4 191 2.9E-73 T 26-04-2016 IPR010743 Methionine biosynthesis MetW RGE_RS17330 0e923e99de3c4d736045ebbf45666d85 244 Gene3D G3DSA:3.40.50.1110 58 241 2.4E-22 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS17330 0e923e99de3c4d736045ebbf45666d85 244 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 63 233 5.3E-21 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS17330 0e923e99de3c4d736045ebbf45666d85 244 SUPERFAMILY SSF52266 58 238 8.4E-26 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS22805 6b0722a622701d237b6eb8eedc88bd91 241 Pfam PF00196 Bacterial regulatory proteins, luxR family 156 211 1.8E-5 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS22805 6b0722a622701d237b6eb8eedc88bd91 241 Gene3D G3DSA:1.10.10.10 153 211 6.1E-10 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22805 6b0722a622701d237b6eb8eedc88bd91 241 SUPERFAMILY SSF46894 148 211 1.56E-10 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS22805 6b0722a622701d237b6eb8eedc88bd91 241 SMART SM00421 154 211 4.1E-4 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS08300 11abc4288e73c5722d5293fac63c4b0a 99 Gene3D G3DSA:1.20.58.380 4 90 3.6E-30 T 26-04-2016 RGE_RS08300 11abc4288e73c5722d5293fac63c4b0a 99 Pfam PF05400 Flagellar protein FliT 19 92 4.4E-18 T 26-04-2016 IPR008622 Flagellar protein FliT RGE_RS05940 429c960442a81a8a11e0c5fef7f1f097 480 PANTHER PTHR11046:SF2 3 476 4.0E-188 T 26-04-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 RGE_RS05940 429c960442a81a8a11e0c5fef7f1f097 480 SUPERFAMILY SSF53098 5 476 6.83E-111 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS05940 429c960442a81a8a11e0c5fef7f1f097 480 Gene3D G3DSA:3.30.420.10 2 196 1.4E-77 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS05940 429c960442a81a8a11e0c5fef7f1f097 480 PIRSF PIRSF000977 1 480 7.2E-196 T 26-04-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 RGE_RS05940 429c960442a81a8a11e0c5fef7f1f097 480 Pfam PF00929 Exonuclease 8 188 5.9E-18 T 26-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RGE_RS05940 429c960442a81a8a11e0c5fef7f1f097 480 Pfam PF08411 Exonuclease C-terminal 207 475 3.9E-90 T 26-04-2016 IPR013620 Exonuclease C-terminal GO:0006281|GO:0008852 RGE_RS05940 429c960442a81a8a11e0c5fef7f1f097 480 PANTHER PTHR11046 3 476 4.0E-188 T 26-04-2016 RGE_RS04270 f8fda53660ae9e26b2d702b745b945a6 320 Gene3D G3DSA:3.40.50.2020 4 160 7.8E-73 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS04270 f8fda53660ae9e26b2d702b745b945a6 320 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 130 145 - T 26-04-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 RGE_RS04270 f8fda53660ae9e26b2d702b745b945a6 320 PANTHER PTHR10210 7 319 2.0E-185 T 26-04-2016 RGE_RS04270 f8fda53660ae9e26b2d702b745b945a6 320 SUPERFAMILY SSF53271 70 305 8.68E-68 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS04270 f8fda53660ae9e26b2d702b745b945a6 320 Pfam PF14572 Phosphoribosyl synthetase-associated domain 204 313 8.5E-33 T 26-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RGE_RS04270 f8fda53660ae9e26b2d702b745b945a6 320 PANTHER PTHR10210:SF41 7 319 2.0E-185 T 26-04-2016 RGE_RS04270 f8fda53660ae9e26b2d702b745b945a6 320 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 6 313 2.4E-125 T 26-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RGE_RS04270 f8fda53660ae9e26b2d702b745b945a6 320 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 6 122 6.1E-48 T 26-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RGE_RS04270 f8fda53660ae9e26b2d702b745b945a6 320 SMART SM01400 5 122 3.5E-74 T 26-04-2016 RGE_RS04270 f8fda53660ae9e26b2d702b745b945a6 320 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 5 314 49.637 T 26-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RGE_RS04270 f8fda53660ae9e26b2d702b745b945a6 320 Gene3D G3DSA:3.40.50.2020 161 288 1.3E-57 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS06060 10a64276c944121907b1b0ead719494a 510 PANTHER PTHR22855:SF40 1 510 0.0 T 26-04-2016 RGE_RS06060 10a64276c944121907b1b0ead719494a 510 Gene3D G3DSA:3.90.226.10 3 253 3.0E-85 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS06060 10a64276c944121907b1b0ead719494a 510 Gene3D G3DSA:3.90.226.10 254 510 5.1E-103 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS06060 10a64276c944121907b1b0ead719494a 510 SUPERFAMILY SSF52096 252 510 1.74E-89 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS06060 10a64276c944121907b1b0ead719494a 510 PANTHER PTHR22855 1 510 0.0 T 26-04-2016 RGE_RS06060 10a64276c944121907b1b0ead719494a 510 SUPERFAMILY SSF52096 3 254 1.48E-81 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS06060 10a64276c944121907b1b0ead719494a 510 Pfam PF01039 Carboxyl transferase domain 27 508 2.5E-199 T 26-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS20190 2e0fc7fb28a336abac8f8e7bec920ab7 354 SUPERFAMILY SSF51735 1 349 1.13E-91 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20190 2e0fc7fb28a336abac8f8e7bec920ab7 354 Gene3D G3DSA:3.40.50.720 1 190 1.8E-64 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20190 2e0fc7fb28a336abac8f8e7bec920ab7 354 PANTHER PTHR10366 2 350 2.2E-168 T 26-04-2016 RGE_RS20190 2e0fc7fb28a336abac8f8e7bec920ab7 354 Gene3D G3DSA:3.90.25.10 191 347 6.6E-56 T 26-04-2016 RGE_RS20190 2e0fc7fb28a336abac8f8e7bec920ab7 354 PANTHER PTHR10366:SF41 2 350 2.2E-168 T 26-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 RGE_RS20190 2e0fc7fb28a336abac8f8e7bec920ab7 354 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 335 1.8E-151 T 26-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 RGE_RS20190 2e0fc7fb28a336abac8f8e7bec920ab7 354 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 323 5.7E-97 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04205 a1052cd595c6105bf456368bd9af14c2 213 SUPERFAMILY SSF53850 1 209 1.21E-65 T 26-04-2016 RGE_RS04205 a1052cd595c6105bf456368bd9af14c2 213 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 1 210 57.426 T 26-04-2016 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RGE_RS04205 a1052cd595c6105bf456368bd9af14c2 213 Gene3D G3DSA:3.40.190.10 1 144 3.4E-44 T 26-04-2016 RGE_RS04205 a1052cd595c6105bf456368bd9af14c2 213 PANTHER PTHR21403:SF3 1 212 2.4E-87 T 26-04-2016 RGE_RS04205 a1052cd595c6105bf456368bd9af14c2 213 PANTHER PTHR21403 1 212 2.4E-87 T 26-04-2016 IPR001348 ATP phosphoribosyltransferase HisG GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RGE_RS04205 a1052cd595c6105bf456368bd9af14c2 213 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 145 166 - T 26-04-2016 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RGE_RS04205 a1052cd595c6105bf456368bd9af14c2 213 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 2 186 3.9E-60 T 26-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RGE_RS04205 a1052cd595c6105bf456368bd9af14c2 213 Pfam PF01634 ATP phosphoribosyltransferase 51 204 9.7E-49 T 26-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RGE_RS08390 cac6c930f4b6ad7b0a00e9a2d051ce11 286 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 207 224 - T 26-04-2016 IPR000540 Flagellar motor protein MotA, conserved site RGE_RS08390 cac6c930f4b6ad7b0a00e9a2d051ce11 286 Pfam PF01618 MotA/TolQ/ExbB proton channel family 127 241 8.5E-13 T 26-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RGE_RS08390 cac6c930f4b6ad7b0a00e9a2d051ce11 286 PANTHER PTHR30433:SF4 1 286 1.1E-137 T 26-04-2016 IPR022522 Flagellar motor stator, MotA RGE_RS08390 cac6c930f4b6ad7b0a00e9a2d051ce11 286 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 283 4.1E-120 T 26-04-2016 IPR022522 Flagellar motor stator, MotA RGE_RS08390 cac6c930f4b6ad7b0a00e9a2d051ce11 286 PANTHER PTHR30433 1 286 1.1E-137 T 26-04-2016 RGE_RS07885 d0606cfabbaa3ccd05c7a2753b0ade60 219 SUPERFAMILY SSF46785 84 163 2.63E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07885 d0606cfabbaa3ccd05c7a2753b0ade60 219 SUPERFAMILY SSF46785 3 81 1.63E-28 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07885 d0606cfabbaa3ccd05c7a2753b0ade60 219 Gene3D G3DSA:1.10.10.10 2 85 2.7E-36 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07885 d0606cfabbaa3ccd05c7a2753b0ade60 219 PANTHER PTHR38768 2 215 1.8E-64 T 26-04-2016 RGE_RS07885 d0606cfabbaa3ccd05c7a2753b0ade60 219 Gene3D G3DSA:1.10.10.10 90 163 3.9E-32 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07885 d0606cfabbaa3ccd05c7a2753b0ade60 219 PANTHER PTHR38768:SF1 2 215 1.8E-64 T 26-04-2016 RGE_RS07885 d0606cfabbaa3ccd05c7a2753b0ade60 219 Hamap MF_01584 UPF0502 protein YceH [yceH]. 4 211 31.92 T 26-04-2016 IPR007432 Protein of unknown function DUF480 RGE_RS07885 d0606cfabbaa3ccd05c7a2753b0ade60 219 Pfam PF04337 Protein of unknown function, DUF480 4 149 1.1E-57 T 26-04-2016 IPR007432 Protein of unknown function DUF480 RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 Pfam PF00027 Cyclic nucleotide-binding domain 34 118 9.4E-22 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 ProSitePatterns PS00042 Crp-type HTH domain signature. 176 199 - T 26-04-2016 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 Gene3D G3DSA:1.10.10.10 150 218 1.4E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 SMART SM00100 15 133 5.2E-18 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 SUPERFAMILY SSF46785 150 215 2.06E-13 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 SMART SM00419 168 217 2.3E-11 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 190 205 9.9E-6 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 174 190 9.9E-6 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 PANTHER PTHR24567:SF30 3 218 2.1E-47 T 26-04-2016 RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 Pfam PF13545 Crp-like helix-turn-helix domain 153 217 4.4E-16 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 Gene3D G3DSA:2.60.120.10 7 147 4.9E-33 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 PANTHER PTHR24567 3 218 2.1E-47 T 26-04-2016 RGE_RS16640 d082810c50df7e144b576a87abcdbff1 222 SUPERFAMILY SSF51206 8 146 1.19E-32 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS10780 83c235b185f99110f1a3708bc20f661d 175 PANTHER PTHR10681:SF107 1 173 1.1E-50 T 26-04-2016 RGE_RS10780 83c235b185f99110f1a3708bc20f661d 175 Gene3D G3DSA:3.40.30.10 1 171 2.1E-44 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS10780 83c235b185f99110f1a3708bc20f661d 175 ProSitePatterns PS00194 Thioredoxin family active site. 64 82 - T 26-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RGE_RS10780 83c235b185f99110f1a3708bc20f661d 175 Pfam PF08534 Redoxin 36 158 6.3E-16 T 26-04-2016 IPR013740 Redoxin GO:0016491 RGE_RS10780 83c235b185f99110f1a3708bc20f661d 175 SUPERFAMILY SSF52833 42 171 5.16E-36 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS10780 83c235b185f99110f1a3708bc20f661d 175 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 7 170 7.4E-52 T 26-04-2016 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 RGE_RS10780 83c235b185f99110f1a3708bc20f661d 175 PANTHER PTHR10681 1 173 1.1E-50 T 26-04-2016 RGE_RS15010 430e7cd030d05174f15bdd884b37f8da 470 Gene3D G3DSA:3.30.43.10 2 91 9.0E-21 T 26-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RGE_RS15010 430e7cd030d05174f15bdd884b37f8da 470 Gene3D G3DSA:3.30.465.10 92 213 1.7E-34 T 26-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RGE_RS15010 430e7cd030d05174f15bdd884b37f8da 470 Pfam PF02913 FAD linked oxidases, C-terminal domain 213 467 1.6E-47 T 26-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RGE_RS15010 430e7cd030d05174f15bdd884b37f8da 470 PANTHER PTHR11748 1 470 3.2E-167 T 26-04-2016 RGE_RS15010 430e7cd030d05174f15bdd884b37f8da 470 Gene3D G3DSA:1.10.45.10 429 467 4.1E-12 T 26-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RGE_RS15010 430e7cd030d05174f15bdd884b37f8da 470 SUPERFAMILY SSF56176 1 213 6.8E-70 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS15010 430e7cd030d05174f15bdd884b37f8da 470 Pfam PF01565 FAD binding domain 36 173 7.9E-34 T 26-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RGE_RS15010 430e7cd030d05174f15bdd884b37f8da 470 PANTHER PTHR11748:SF76 1 470 3.2E-167 T 26-04-2016 RGE_RS15010 430e7cd030d05174f15bdd884b37f8da 470 SUPERFAMILY SSF55103 188 467 2.78E-54 T 26-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RGE_RS05490 036b0b943fc7b198ed4c79142c861673 216 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 185 1.0E-37 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS05490 036b0b943fc7b198ed4c79142c861673 216 SMART SM01007 8 185 1.8E-42 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS05490 036b0b943fc7b198ed4c79142c861673 216 SUPERFAMILY SSF53639 1 186 2.55E-40 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS05490 036b0b943fc7b198ed4c79142c861673 216 PANTHER PTHR22789 1 182 1.7E-38 T 26-04-2016 RGE_RS05490 036b0b943fc7b198ed4c79142c861673 216 PANTHER PTHR22789:SF0 1 182 1.7E-38 T 26-04-2016 RGE_RS05490 036b0b943fc7b198ed4c79142c861673 216 Gene3D G3DSA:3.40.225.10 4 186 5.6E-45 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS00555 fc9bce1be5702b010ce2b0631e107b8a 539 Pfam PF00990 Diguanylate cyclase, GGDEF domain 376 530 2.1E-43 T 26-04-2016 IPR000160 GGDEF domain RGE_RS00555 fc9bce1be5702b010ce2b0631e107b8a 539 SUPERFAMILY SSF55073 380 535 4.24E-46 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS00555 fc9bce1be5702b010ce2b0631e107b8a 539 SUPERFAMILY SSF48452 197 338 9.99E-8 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00555 fc9bce1be5702b010ce2b0631e107b8a 539 SUPERFAMILY SSF48452 84 143 9.99E-8 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00555 fc9bce1be5702b010ce2b0631e107b8a 539 Gene3D G3DSA:3.30.70.270 378 536 1.9E-51 T 26-04-2016 RGE_RS00555 fc9bce1be5702b010ce2b0631e107b8a 539 SMART SM00267 364 534 4.6E-54 T 26-04-2016 IPR000160 GGDEF domain RGE_RS00555 fc9bce1be5702b010ce2b0631e107b8a 539 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 374 534 2.5E-49 T 26-04-2016 IPR000160 GGDEF domain RGE_RS00555 fc9bce1be5702b010ce2b0631e107b8a 539 Gene3D G3DSA:1.25.40.10 200 377 1.3E-6 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00555 fc9bce1be5702b010ce2b0631e107b8a 539 Gene3D G3DSA:1.25.40.10 87 178 4.0E-4 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00555 fc9bce1be5702b010ce2b0631e107b8a 539 PANTHER PTHR10799 396 532 3.8E-28 T 26-04-2016 RGE_RS05325 3d74eb2ea7ebdc84b6271cc939f4b7aa 338 SUPERFAMILY SSF51735 1 335 2.38E-96 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05325 3d74eb2ea7ebdc84b6271cc939f4b7aa 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 324 7.1E-51 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05325 3d74eb2ea7ebdc84b6271cc939f4b7aa 338 Gene3D G3DSA:3.40.50.720 1 179 1.0E-46 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05325 3d74eb2ea7ebdc84b6271cc939f4b7aa 338 PANTHER PTHR10366:SF39 3 337 4.1E-142 T 26-04-2016 RGE_RS05325 3d74eb2ea7ebdc84b6271cc939f4b7aa 338 PANTHER PTHR10366 3 337 4.1E-142 T 26-04-2016 RGE_RS05325 3d74eb2ea7ebdc84b6271cc939f4b7aa 338 Gene3D G3DSA:3.90.25.10 264 337 1.7E-53 T 26-04-2016 RGE_RS05325 3d74eb2ea7ebdc84b6271cc939f4b7aa 338 Gene3D G3DSA:3.90.25.10 180 232 1.7E-53 T 26-04-2016 RGE_RS05325 3d74eb2ea7ebdc84b6271cc939f4b7aa 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 4 334 4.6E-125 T 26-04-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 Pfam PF00512 His Kinase A (phospho-acceptor) domain 515 579 9.2E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 Gene3D G3DSA:3.40.50.2300 753 875 8.3E-26 T 26-04-2016 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 Pfam PF08448 PAS fold 278 377 1.5E-15 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 Pfam PF08448 PAS fold 151 260 6.5E-25 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 Pfam PF08448 PAS fold 394 503 1.1E-7 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 Gene3D G3DSA:3.30.450.20 379 499 1.0E-23 T 26-04-2016 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SUPERFAMILY SSF55874 568 738 3.27E-43 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 PANTHER PTHR24423 386 874 2.6E-143 T 26-04-2016 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 PANTHER PTHR24423 142 273 2.6E-143 T 26-04-2016 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SMART SM00387 625 738 8.7E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 Pfam PF00072 Response regulator receiver domain 760 872 1.3E-17 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 142 265 2.5E-17 T 26-04-2016 IPR000014 PAS domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 384 506 2.1E-19 T 26-04-2016 IPR000014 PAS domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 267 382 2.4E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 Gene3D G3DSA:3.30.565.10 579 737 2.1E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SUPERFAMILY SSF47384 505 580 1.67E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SUPERFAMILY SSF55785 373 499 8.7E-22 T 26-04-2016 IPR000014 PAS domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SUPERFAMILY SSF55785 140 256 9.35E-22 T 26-04-2016 IPR000014 PAS domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SMART SM00086 217 258 3.6 T 26-04-2016 IPR001610 PAC motif RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SMART SM00086 462 501 10.0 T 26-04-2016 IPR001610 PAC motif RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SUPERFAMILY SSF52172 757 875 2.13E-29 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 626 736 7.6E-22 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SMART SM00091 270 336 1.0E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SMART SM00091 388 456 8.4E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SMART SM00091 144 211 2.4E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SMART SM00448 758 872 3.2E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SUPERFAMILY SSF55785 254 363 5.03E-21 T 26-04-2016 IPR000014 PAS domain RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 Gene3D G3DSA:1.10.287.130 508 575 7.7E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 Gene3D G3DSA:3.30.450.20 259 375 4.8E-27 T 26-04-2016 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 Gene3D G3DSA:3.30.450.20 140 258 3.7E-22 T 26-04-2016 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 SMART SM00388 514 579 2.2E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 681 691 4.8E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 697 715 4.8E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 722 735 4.8E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23195 8b5d914504cf746b7fb81e8748a14182 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 663 677 4.8E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 Gene3D G3DSA:3.40.50.300 189 289 1.5E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 Gene3D G3DSA:3.40.50.300 7 112 1.5E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 Pfam PF13361 UvrD-like helicase C-terminal domain 281 645 8.4E-69 T 26-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 Gene3D G3DSA:1.10.486.10 392 515 7.6E-42 T 26-04-2016 RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 Gene3D G3DSA:1.10.486.10 552 570 7.6E-42 T 26-04-2016 RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 Pfam PF00580 UvrD/REP helicase N-terminal domain 12 275 2.1E-69 T 26-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 Gene3D G3DSA:1.10.10.160 116 188 4.8E-19 T 26-04-2016 IPR013986 DExx box DNA helicase domain RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 PANTHER PTHR11070 1 511 3.8E-205 T 26-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 PANTHER PTHR11070 558 667 3.8E-205 T 26-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 Gene3D G3DSA:3.40.50.300 290 391 3.2E-72 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 Gene3D G3DSA:3.40.50.300 581 672 3.2E-72 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 PANTHER PTHR11070:SF7 1 511 3.8E-205 T 26-04-2016 RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 PANTHER PTHR11070:SF7 558 667 3.8E-205 T 26-04-2016 RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 SUPERFAMILY SSF52540 7 529 1.7E-172 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16520 03231fbd7e1859f0a57dc2a0b83bf40a 784 SUPERFAMILY SSF52540 582 668 1.7E-172 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17155 cd1cf018d3bf0fb160487b1c097548d9 234 SUPERFAMILY SSF46894 127 228 7.09E-28 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS17155 cd1cf018d3bf0fb160487b1c097548d9 234 SMART SM00448 3 116 4.3E-38 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17155 cd1cf018d3bf0fb160487b1c097548d9 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 227 1.5E-23 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS17155 cd1cf018d3bf0fb160487b1c097548d9 234 Pfam PF00072 Response regulator receiver domain 6 117 2.3E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17155 cd1cf018d3bf0fb160487b1c097548d9 234 SMART SM00862 151 227 1.1E-24 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS17155 cd1cf018d3bf0fb160487b1c097548d9 234 PANTHER PTHR26402 3 229 6.7E-89 T 26-04-2016 RGE_RS17155 cd1cf018d3bf0fb160487b1c097548d9 234 Gene3D G3DSA:1.10.10.10 129 230 9.3E-33 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17155 cd1cf018d3bf0fb160487b1c097548d9 234 Gene3D G3DSA:3.40.50.2300 4 124 9.1E-38 T 26-04-2016 RGE_RS17155 cd1cf018d3bf0fb160487b1c097548d9 234 PANTHER PTHR26402:SF292 3 229 6.7E-89 T 26-04-2016 RGE_RS17155 cd1cf018d3bf0fb160487b1c097548d9 234 SUPERFAMILY SSF52172 4 126 1.99E-38 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 SUPERFAMILY SSF82693 573 686 3.56E-10 T 26-04-2016 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 Gene3D G3DSA:3.30.70.1430 578 685 1.7E-10 T 26-04-2016 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 Gene3D G3DSA:3.30.2090.10 189 270 3.2E-11 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 SUPERFAMILY SSF82714 736 822 3.53E-11 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 SUPERFAMILY SSF82866 883 1063 1.83E-39 T 26-04-2016 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 PANTHER PTHR32063 5 1064 0.0 T 26-04-2016 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 Gene3D G3DSA:3.30.2090.10 739 823 9.5E-11 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 Gene3D G3DSA:1.20.1640.10 299 508 1.0E-44 T 26-04-2016 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 SUPERFAMILY SSF82866 303 505 4.32E-38 T 26-04-2016 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 PANTHER PTHR32063:SF16 5 1064 0.0 T 26-04-2016 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 Gene3D G3DSA:1.10.3850.10 829 1061 2.0E-66 T 26-04-2016 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 Gene3D G3DSA:3.30.70.1430 43 144 3.0E-16 T 26-04-2016 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 SUPERFAMILY SSF82714 188 270 7.06E-11 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 SUPERFAMILY SSF82693 43 134 1.2E-17 T 26-04-2016 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 Pfam PF00873 AcrB/AcrD/AcrF family 889 1057 2.1E-25 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 Pfam PF00873 AcrB/AcrD/AcrF family 16 843 1.0E-115 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 PRINTS PR00702 Acriflavin resistance protein family signature 453 476 1.2E-26 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 PRINTS PR00702 Acriflavin resistance protein family signature 13 37 1.2E-26 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 PRINTS PR00702 Acriflavin resistance protein family signature 41 59 1.2E-26 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 PRINTS PR00702 Acriflavin resistance protein family signature 398 422 1.2E-26 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 PRINTS PR00702 Acriflavin resistance protein family signature 344 367 1.2E-26 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 PRINTS PR00702 Acriflavin resistance protein family signature 478 501 1.2E-26 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 SUPERFAMILY SSF82693 281 336 1.52E-12 T 26-04-2016 RGE_RS22590 adb39a516cbb3fe820858896e98a0e72 1072 SUPERFAMILY SSF82693 140 186 1.52E-12 T 26-04-2016 RGE_RS12975 6831bc72be9dac9b4850166d696e6ee6 480 SMART SM00345 7 66 2.3E-15 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS12975 6831bc72be9dac9b4850166d696e6ee6 480 SUPERFAMILY SSF53383 98 468 4.17E-94 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS12975 6831bc72be9dac9b4850166d696e6ee6 480 Gene3D G3DSA:3.90.1150.10 350 467 7.0E-6 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS12975 6831bc72be9dac9b4850166d696e6ee6 480 Gene3D G3DSA:3.40.640.10 146 349 1.5E-69 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS12975 6831bc72be9dac9b4850166d696e6ee6 480 PANTHER PTHR11751:SF314 86 468 1.4E-167 T 26-04-2016 RGE_RS12975 6831bc72be9dac9b4850166d696e6ee6 480 Pfam PF00155 Aminotransferase class I and II 164 454 1.1E-26 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS12975 6831bc72be9dac9b4850166d696e6ee6 480 Gene3D G3DSA:1.10.10.10 2 68 3.3E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS12975 6831bc72be9dac9b4850166d696e6ee6 480 SUPERFAMILY SSF46785 2 69 7.76E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS12975 6831bc72be9dac9b4850166d696e6ee6 480 PANTHER PTHR11751 86 468 1.4E-167 T 26-04-2016 RGE_RS12975 6831bc72be9dac9b4850166d696e6ee6 480 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 3.8E-14 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS06710 5da9b11fdec1475e8ccdc0dea0f5f1bb 1169 SMART SM00481 4 71 5.0E-24 T 26-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 RGE_RS06710 5da9b11fdec1475e8ccdc0dea0f5f1bb 1169 Gene3D G3DSA:2.40.50.140 986 1078 2.3E-6 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06710 5da9b11fdec1475e8ccdc0dea0f5f1bb 1169 Pfam PF01336 OB-fold nucleic acid binding domain 1000 1074 8.3E-7 T 26-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RGE_RS06710 5da9b11fdec1475e8ccdc0dea0f5f1bb 1169 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 291 738 1.2E-167 T 26-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS06710 5da9b11fdec1475e8ccdc0dea0f5f1bb 1169 Pfam PF02811 PHP domain 5 172 7.3E-40 T 26-04-2016 IPR004013 PHP domain GO:0003824 RGE_RS06710 5da9b11fdec1475e8ccdc0dea0f5f1bb 1169 Pfam PF14579 Helix-hairpin-helix motif 812 906 1.0E-24 T 26-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS06710 5da9b11fdec1475e8ccdc0dea0f5f1bb 1169 PANTHER PTHR32294 1 1169 0.0 T 26-04-2016 RGE_RS06710 5da9b11fdec1475e8ccdc0dea0f5f1bb 1169 PANTHER PTHR32294:SF0 1 1169 0.0 T 26-04-2016 RGE_RS06710 5da9b11fdec1475e8ccdc0dea0f5f1bb 1169 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 3 1033 0.0 T 26-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS06710 5da9b11fdec1475e8ccdc0dea0f5f1bb 1169 Gene3D G3DSA:3.20.20.140 3 255 8.9E-22 T 26-04-2016 RGE_RS06710 5da9b11fdec1475e8ccdc0dea0f5f1bb 1169 SUPERFAMILY SSF89550 3 262 1.45E-10 T 26-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RGE_RS10680 eb540099432cf9234e26f98dc883bc47 419 Pfam PF00440 Bacterial regulatory proteins, tetR family 237 282 3.6E-11 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS10680 eb540099432cf9234e26f98dc883bc47 419 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 73 1.9E-11 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS10680 eb540099432cf9234e26f98dc883bc47 419 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 9.1E-6 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS10680 eb540099432cf9234e26f98dc883bc47 419 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 9.1E-6 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS10680 eb540099432cf9234e26f98dc883bc47 419 Gene3D G3DSA:1.10.357.10 73 209 7.2E-9 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS10680 eb540099432cf9234e26f98dc883bc47 419 SUPERFAMILY SSF46689 18 91 1.2E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS10680 eb540099432cf9234e26f98dc883bc47 419 Gene3D G3DSA:1.10.10.60 18 72 1.1E-16 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS10680 eb540099432cf9234e26f98dc883bc47 419 SUPERFAMILY SSF46689 231 305 8.51E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS10680 eb540099432cf9234e26f98dc883bc47 419 Gene3D G3DSA:1.10.357.10 234 414 1.1E-28 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS10680 eb540099432cf9234e26f98dc883bc47 419 SUPERFAMILY SSF48498 334 416 8.49E-5 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS10680 eb540099432cf9234e26f98dc883bc47 419 PANTHER PTHR30055 218 415 1.6E-19 T 26-04-2016 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 Pfam PF13365 Trypsin-like peptidase domain 136 269 4.1E-32 T 26-04-2016 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 Gene3D G3DSA:2.40.10.10 69 197 3.2E-33 T 26-04-2016 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 Gene3D G3DSA:2.30.42.10 310 405 1.1E-28 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 Gene3D G3DSA:2.30.42.10 420 503 1.7E-18 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 PANTHER PTHR22939 115 411 9.3E-107 T 26-04-2016 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 PANTHER PTHR22939 38 91 9.3E-107 T 26-04-2016 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 PANTHER PTHR22939:SF79 115 411 9.3E-107 T 26-04-2016 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 PANTHER PTHR22939:SF79 38 91 9.3E-107 T 26-04-2016 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 70 499 5.8E-139 T 26-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 SMART SM00228 418 494 5.4E-11 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 SMART SM00228 308 390 1.4E-16 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 SUPERFAMILY SSF50494 133 317 1.16E-59 T 26-04-2016 IPR009003 Peptidase S1, PA clan RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 SUPERFAMILY SSF50494 50 89 1.16E-59 T 26-04-2016 IPR009003 Peptidase S1, PA clan RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 PRINTS PR00834 HtrA/DegQ protease family signature 145 157 7.6E-48 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 PRINTS PR00834 HtrA/DegQ protease family signature 262 279 7.6E-48 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 PRINTS PR00834 HtrA/DegQ protease family signature 240 257 7.6E-48 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 PRINTS PR00834 HtrA/DegQ protease family signature 206 230 7.6E-48 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 PRINTS PR00834 HtrA/DegQ protease family signature 166 186 7.6E-48 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 PRINTS PR00834 HtrA/DegQ protease family signature 348 360 7.6E-48 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 SUPERFAMILY SSF50156 416 503 1.21E-16 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 SUPERFAMILY SSF50156 308 400 8.23E-22 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 Pfam PF13180 PDZ domain 309 399 1.6E-16 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 Pfam PF13180 PDZ domain 420 497 5.3E-8 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS03615 5dd9efd48fa4952f16baacecb1ae9a96 504 Gene3D G3DSA:2.40.10.10 198 309 5.5E-38 T 26-04-2016 RGE_RS01605 7306dd22ae498ec4db03450da5ab5350 104 SUPERFAMILY SSF54999 6 103 1.16E-37 T 26-04-2016 IPR027486 Ribosomal protein S10 domain RGE_RS01605 7306dd22ae498ec4db03450da5ab5350 104 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 4 103 27.521 T 26-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RGE_RS01605 7306dd22ae498ec4db03450da5ab5350 104 Gene3D G3DSA:3.30.70.600 5 103 7.1E-43 T 26-04-2016 IPR027486 Ribosomal protein S10 domain RGE_RS01605 7306dd22ae498ec4db03450da5ab5350 104 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 5 102 4.4E-45 T 26-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RGE_RS01605 7306dd22ae498ec4db03450da5ab5350 104 PANTHER PTHR11700 3 103 3.9E-47 T 26-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RGE_RS01605 7306dd22ae498ec4db03450da5ab5350 104 SMART SM01403 8 102 7.1E-55 T 26-04-2016 IPR027486 Ribosomal protein S10 domain RGE_RS01605 7306dd22ae498ec4db03450da5ab5350 104 ProSitePatterns PS00361 Ribosomal protein S10 signature. 30 45 - T 26-04-2016 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01605 7306dd22ae498ec4db03450da5ab5350 104 Pfam PF00338 Ribosomal protein S10p/S20e 8 102 8.3E-35 T 26-04-2016 IPR027486 Ribosomal protein S10 domain RGE_RS01605 7306dd22ae498ec4db03450da5ab5350 104 PRINTS PR00971 Ribosomal protein S10 family signature 62 76 4.9E-18 T 26-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RGE_RS01605 7306dd22ae498ec4db03450da5ab5350 104 PRINTS PR00971 Ribosomal protein S10 family signature 41 56 4.9E-18 T 26-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RGE_RS01605 7306dd22ae498ec4db03450da5ab5350 104 PRINTS PR00971 Ribosomal protein S10 family signature 6 19 4.9E-18 T 26-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RGE_RS11715 aac59eade3a26ddc26d7e8e9c287a5ec 398 SMART SM00382 124 249 0.0071 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11715 aac59eade3a26ddc26d7e8e9c287a5ec 398 Pfam PF00437 Type II/IV secretion system protein 116 272 3.5E-34 T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS11715 aac59eade3a26ddc26d7e8e9c287a5ec 398 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 195 209 - T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS11715 aac59eade3a26ddc26d7e8e9c287a5ec 398 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 5 344 4.1E-120 T 26-04-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 RGE_RS11715 aac59eade3a26ddc26d7e8e9c287a5ec 398 Gene3D G3DSA:3.40.50.300 102 344 2.6E-58 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11715 aac59eade3a26ddc26d7e8e9c287a5ec 398 PANTHER PTHR30486:SF3 4 351 3.6E-120 T 26-04-2016 RGE_RS11715 aac59eade3a26ddc26d7e8e9c287a5ec 398 SUPERFAMILY SSF52540 7 337 2.06E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11715 aac59eade3a26ddc26d7e8e9c287a5ec 398 PANTHER PTHR30486 4 351 3.6E-120 T 26-04-2016 RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 SMART SM00382 46 324 2.0E-12 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 Pfam PF07724 AAA domain (Cdc48 subfamily) 172 321 6.3E-40 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 PANTHER PTHR11262 1 102 3.5E-194 T 26-04-2016 RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 PANTHER PTHR11262 210 435 3.5E-194 T 26-04-2016 RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 Gene3D G3DSA:1.10.8.10 109 169 1.6E-23 T 26-04-2016 RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 Gene3D G3DSA:1.10.8.10 205 235 1.6E-23 T 26-04-2016 RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 1 435 2.2E-195 T 26-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 SMART SM01086 327 426 1.2E-23 T 26-04-2016 IPR019489 Clp ATPase, C-terminal RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 327 398 3.9E-6 T 26-04-2016 IPR019489 Clp ATPase, C-terminal RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 Gene3D G3DSA:1.10.8.60 326 435 1.7E-33 T 26-04-2016 RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 Gene3D G3DSA:3.40.50.300 237 323 1.3E-51 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 Gene3D G3DSA:3.40.50.300 2 107 1.3E-51 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 PANTHER PTHR11262:SF3 1 102 3.5E-194 T 26-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 PANTHER PTHR11262:SF3 210 435 3.5E-194 T 26-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 50 99 2.3E-6 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 SUPERFAMILY SSF52540 1 433 2.55E-84 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21330 ad497496c6f6d82d9e5cd7510c2abe17 435 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 435 41.338 T 26-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 1.2E-21 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 22 39 1.2E-21 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 97 108 1.2E-21 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 1.2E-21 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.2E-21 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 SUPERFAMILY SSF51735 22 253 1.12E-51 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 27 252 8.4E-32 T 26-04-2016 RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 Gene3D G3DSA:3.40.50.720 22 253 1.2E-52 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 PANTHER PTHR24322:SF211 166 200 1.1E-36 T 26-04-2016 RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 PANTHER PTHR24322:SF211 25 150 1.1E-36 T 26-04-2016 RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 97 108 2.2E-5 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 2.2E-5 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 2.2E-5 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 PANTHER PTHR24322 166 200 1.1E-36 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02395 422bef811a6cf53e2217685b5f9ec72a 267 PANTHER PTHR24322 25 150 1.1E-36 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 7.0E-74 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 PANTHER PTHR30295 1 154 3.5E-45 T 26-04-2016 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 PANTHER PTHR30295:SF0 1 154 3.5E-45 T 26-04-2016 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 PRINTS PR00601 Bacterioferritin signature 86 106 2.6E-68 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 PRINTS PR00601 Bacterioferritin signature 107 127 2.6E-68 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 PRINTS PR00601 Bacterioferritin signature 128 149 2.6E-68 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 PRINTS PR00601 Bacterioferritin signature 65 85 2.6E-68 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 PRINTS PR00601 Bacterioferritin signature 23 43 2.6E-68 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 PRINTS PR00601 Bacterioferritin signature 3 22 2.6E-68 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 PRINTS PR00601 Bacterioferritin signature 44 64 2.6E-68 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 Gene3D G3DSA:1.20.1260.10 1 156 7.3E-62 T 26-04-2016 IPR012347 Ferritin-related RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 Pfam PF00210 Ferritin-like domain 9 141 1.4E-36 T 26-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 PIRSF PIRSF002560 1 157 2.8E-69 T 26-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RGE_RS03675 12bdb7b3da36de6dc9b5a67a6411bee4 158 SUPERFAMILY SSF47240 1 156 1.39E-52 T 26-04-2016 IPR009078 Ferritin-like superfamily RGE_RS20690 437405ed0ea071128e5633715cc3c30a 364 Pfam PF00472 RF-1 domain 216 324 5.5E-41 T 26-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RGE_RS20690 437405ed0ea071128e5633715cc3c30a 364 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 231 247 - T 26-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RGE_RS20690 437405ed0ea071128e5633715cc3c30a 364 PANTHER PTHR11075:SF9 1 359 1.0E-170 T 26-04-2016 RGE_RS20690 437405ed0ea071128e5633715cc3c30a 364 Pfam PF03462 PCRF domain 15 206 1.8E-69 T 26-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RGE_RS20690 437405ed0ea071128e5633715cc3c30a 364 Gene3D G3DSA:1.20.58.410 10 96 8.8E-20 T 26-04-2016 RGE_RS20690 437405ed0ea071128e5633715cc3c30a 364 SMART SM00937 67 181 1.7E-59 T 26-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RGE_RS20690 437405ed0ea071128e5633715cc3c30a 364 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 360 4.0E-156 T 26-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RGE_RS20690 437405ed0ea071128e5633715cc3c30a 364 PANTHER PTHR11075 1 359 1.0E-170 T 26-04-2016 RGE_RS20690 437405ed0ea071128e5633715cc3c30a 364 Gene3D G3DSA:3.30.160.20 215 291 5.1E-35 T 26-04-2016 IPR014720 Double-stranded RNA-binding domain RGE_RS20690 437405ed0ea071128e5633715cc3c30a 364 SUPERFAMILY SSF75620 14 356 3.4E-131 T 26-04-2016 RGE_RS20690 437405ed0ea071128e5633715cc3c30a 364 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 360 39.485 T 26-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 151 1.5E-60 T 26-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 156 313 2.2E-68 T 26-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 SUPERFAMILY SSF55347 150 313 9.23E-76 T 26-04-2016 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 SMART SM00846 3 151 1.1E-97 T 26-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 2.0E-45 T 26-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 145 163 2.0E-45 T 26-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 2.0E-45 T 26-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 172 188 2.0E-45 T 26-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 2.0E-45 T 26-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 PIRSF PIRSF000149 1 332 1.2E-133 T 26-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 PANTHER PTHR10836 1 328 6.7E-227 T 26-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 Gene3D G3DSA:3.30.360.10 160 315 1.2E-83 T 26-04-2016 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 Gene3D G3DSA:3.40.50.720 2 159 4.4E-79 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 2.6E-135 T 26-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 149 156 - T 26-04-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 RGE_RS21870 047d7390a25675955a7dcb6affd3e5f8 332 SUPERFAMILY SSF51735 3 167 1.03E-67 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS19055 2e3e2888911093fdf2303c4f4b567edf 373 SUPERFAMILY SSF53927 7 154 1.67E-38 T 26-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RGE_RS19055 2e3e2888911093fdf2303c4f4b567edf 373 Pfam PF01872 RibD C-terminal domain 157 361 8.7E-46 T 26-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RGE_RS19055 2e3e2888911093fdf2303c4f4b567edf 373 PANTHER PTHR11079:SF10 7 236 3.0E-45 T 26-04-2016 RGE_RS19055 2e3e2888911093fdf2303c4f4b567edf 373 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 55 96 - T 26-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RGE_RS19055 2e3e2888911093fdf2303c4f4b567edf 373 PIRSF PIRSF006769 4 370 1.1E-111 T 26-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 RGE_RS19055 2e3e2888911093fdf2303c4f4b567edf 373 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 13 107 3.0E-17 T 26-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 RGE_RS19055 2e3e2888911093fdf2303c4f4b567edf 373 Gene3D G3DSA:3.40.430.10 136 364 9.4E-67 T 26-04-2016 IPR024072 Dihydrofolate reductase-like domain RGE_RS19055 2e3e2888911093fdf2303c4f4b567edf 373 SUPERFAMILY SSF53597 155 364 1.66E-58 T 26-04-2016 IPR024072 Dihydrofolate reductase-like domain RGE_RS19055 2e3e2888911093fdf2303c4f4b567edf 373 Gene3D G3DSA:3.40.140.10 12 135 1.1E-25 T 26-04-2016 RGE_RS19055 2e3e2888911093fdf2303c4f4b567edf 373 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 156 366 9.7E-52 T 26-04-2016 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 RGE_RS19055 2e3e2888911093fdf2303c4f4b567edf 373 PANTHER PTHR11079 7 236 3.0E-45 T 26-04-2016 RGE_RS19055 2e3e2888911093fdf2303c4f4b567edf 373 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 13 362 4.6E-99 T 26-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 RGE_RS21405 6e3c0decf89bddd35a9ce632ecef3458 752 PANTHER PTHR32552 16 752 1.8E-81 T 26-04-2016 RGE_RS21405 6e3c0decf89bddd35a9ce632ecef3458 752 Gene3D G3DSA:2.40.170.20 179 752 2.7E-103 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS21405 6e3c0decf89bddd35a9ce632ecef3458 752 PANTHER PTHR32552:SF10 16 752 1.8E-81 T 26-04-2016 RGE_RS21405 6e3c0decf89bddd35a9ce632ecef3458 752 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 69 752 5.2E-69 T 26-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 RGE_RS21405 6e3c0decf89bddd35a9ce632ecef3458 752 Pfam PF00593 TonB dependent receptor 513 747 4.6E-24 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS21405 6e3c0decf89bddd35a9ce632ecef3458 752 SUPERFAMILY SSF56935 62 752 3.92E-97 T 26-04-2016 RGE_RS21405 6e3c0decf89bddd35a9ce632ecef3458 752 Gene3D G3DSA:2.170.130.10 51 172 9.3E-30 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS21405 6e3c0decf89bddd35a9ce632ecef3458 752 Pfam PF07715 TonB-dependent Receptor Plug Domain 67 165 1.9E-16 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 SUPERFAMILY SSF52210 132 296 3.14E-51 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 SMART SM00881 4 103 2.0E-29 T 26-04-2016 IPR003781 CoA-binding GO:0048037 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 PANTHER PTHR11117 1 297 7.1E-152 T 26-04-2016 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 Pfam PF00549 CoA-ligase 160 271 2.7E-14 T 26-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 296 1.9E-122 T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 Gene3D G3DSA:3.40.50.720 2 128 1.2E-45 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 Gene3D G3DSA:3.40.50.261 129 296 6.0E-69 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 161 190 - T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 SUPERFAMILY SSF51735 1 118 1.23E-34 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 PIRSF PIRSF001553 1 297 9.0E-112 T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 PANTHER PTHR11117:SF2 1 297 7.1E-152 T 26-04-2016 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 245 258 - T 26-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 PRINTS PR01798 Succinyl-CoA synthase signature 249 266 5.2E-32 T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 PRINTS PR01798 Succinyl-CoA synthase signature 217 230 5.2E-32 T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 PRINTS PR01798 Succinyl-CoA synthase signature 186 204 5.2E-32 T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 PRINTS PR01798 Succinyl-CoA synthase signature 85 102 5.2E-32 T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS22715 db8bdc44abc24be0f2b8548206339cee 297 Pfam PF02629 CoA binding domain 6 102 8.4E-23 T 26-04-2016 IPR003781 CoA-binding GO:0048037 RGE_RS12650 5d503d0a75df2be15883f1d2ed7bd362 359 SMART SM00530 6 62 3.7E-9 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS12650 5d503d0a75df2be15883f1d2ed7bd362 359 SUPERFAMILY SSF47413 2 66 6.48E-11 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS12650 5d503d0a75df2be15883f1d2ed7bd362 359 Gene3D G3DSA:1.10.260.40 9 60 2.5E-12 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS12650 5d503d0a75df2be15883f1d2ed7bd362 359 Pfam PF13560 Helix-turn-helix domain 4 57 1.6E-9 T 26-04-2016 RGE_RS12650 5d503d0a75df2be15883f1d2ed7bd362 359 Pfam PF06114 Domain of unknown function (DUF955) 150 263 3.9E-15 T 26-04-2016 IPR010359 HTH domain, IrrE-type RGE_RS12650 5d503d0a75df2be15883f1d2ed7bd362 359 PANTHER PTHR10245:SF22 4 266 1.3E-17 T 26-04-2016 RGE_RS12650 5d503d0a75df2be15883f1d2ed7bd362 359 PANTHER PTHR10245 4 266 1.3E-17 T 26-04-2016 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 Pfam PF01515 Phosphate acetyl/butaryl transferase 436 757 5.2E-89 T 26-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 Gene3D G3DSA:3.40.50.10750 575 732 4.9E-49 T 26-04-2016 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 SUPERFAMILY SSF53223 16 167 1.01E-51 T 26-04-2016 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 PANTHER PTHR23406 378 440 4.4E-160 T 26-04-2016 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 PANTHER PTHR23406 38 361 4.4E-160 T 26-04-2016 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 Gene3D G3DSA:3.40.50.720 167 450 5.8E-88 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 Pfam PF00390 Malic enzyme, N-terminal domain 26 119 1.9E-20 T 26-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 Pfam PF03949 Malic enzyme, NAD binding domain 171 365 1.5E-23 T 26-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 SMART SM00919 169 406 1.9E-137 T 26-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 Gene3D G3DSA:3.40.50.10380 15 166 4.4E-49 T 26-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 PIRSF PIRSF036684 5 764 0.0 T 26-04-2016 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 SMART SM01274 24 157 2.4E-76 T 26-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 SUPERFAMILY SSF53659 435 761 5.76E-86 T 26-04-2016 RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 SUPERFAMILY SSF51735 169 445 1.73E-83 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22115 fcd95e00c2bd6e54967e6c980e5fadfe 764 Pfam PF12434 Malate dehydrogenase enzyme 5 22 3.2E-6 T 26-04-2016 IPR032683 Malate dehydrogenase enzyme, N-terminal RGE_RS07230 8f01399f151073191b42f9c8ea7a68f7 266 Gene3D G3DSA:3.20.20.150 1 265 6.4E-90 T 26-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RGE_RS07230 8f01399f151073191b42f9c8ea7a68f7 266 SUPERFAMILY SSF51658 1 265 3.73E-79 T 26-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RGE_RS07230 8f01399f151073191b42f9c8ea7a68f7 266 PANTHER PTHR12110 1 265 8.5E-100 T 26-04-2016 RGE_RS07230 8f01399f151073191b42f9c8ea7a68f7 266 PIRSF PIRSF006241 1 266 1.4E-92 T 26-04-2016 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 RGE_RS07230 8f01399f151073191b42f9c8ea7a68f7 266 PANTHER PTHR12110:SF22 1 265 8.5E-100 T 26-04-2016 RGE_RS07230 8f01399f151073191b42f9c8ea7a68f7 266 Pfam PF01261 Xylose isomerase-like TIM barrel 21 220 2.1E-31 T 26-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RGE_RS01700 9926d5546582e509f87c8ec9cda9c6dc 172 SUPERFAMILY SSF54211 85 165 6.32E-26 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS01700 9926d5546582e509f87c8ec9cda9c6dc 172 ProSitePatterns PS00585 Ribosomal protein S5 signature. 34 66 - T 26-04-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site RGE_RS01700 9926d5546582e509f87c8ec9cda9c6dc 172 Pfam PF03719 Ribosomal protein S5, C-terminal domain 93 163 1.5E-28 T 26-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 RGE_RS01700 9926d5546582e509f87c8ec9cda9c6dc 172 Pfam PF00333 Ribosomal protein S5, N-terminal domain 17 80 3.4E-26 T 26-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 RGE_RS01700 9926d5546582e509f87c8ec9cda9c6dc 172 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 16 169 5.0E-65 T 26-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RGE_RS01700 9926d5546582e509f87c8ec9cda9c6dc 172 SUPERFAMILY SSF54768 15 81 8.37E-22 T 26-04-2016 RGE_RS01700 9926d5546582e509f87c8ec9cda9c6dc 172 Gene3D G3DSA:3.30.230.10 82 165 3.6E-33 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS01700 9926d5546582e509f87c8ec9cda9c6dc 172 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 169 34.102 T 26-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RGE_RS01700 9926d5546582e509f87c8ec9cda9c6dc 172 PANTHER PTHR13718 15 170 3.1E-67 T 26-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 RGE_RS01700 9926d5546582e509f87c8ec9cda9c6dc 172 Gene3D G3DSA:3.30.160.20 15 79 2.0E-27 T 26-04-2016 IPR014720 Double-stranded RNA-binding domain RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 PANTHER PTHR20854:SF5 2 258 1.5E-70 T 26-04-2016 RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 Pfam PF00459 Inositol monophosphatase family 17 245 2.5E-54 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 Gene3D G3DSA:3.40.190.80 161 257 4.5E-36 T 26-04-2016 RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 88 101 - T 26-04-2016 IPR020583 Inositol monophosphatase, metal-binding site RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 Gene3D G3DSA:3.30.540.10 11 160 1.6E-44 T 26-04-2016 RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 PANTHER PTHR20854 2 258 1.5E-70 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 43 63 4.0E-16 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 181 202 4.0E-16 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 65 81 4.0E-16 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 88 104 4.0E-16 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 213 237 4.0E-16 T 26-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 216 230 - T 26-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 SUPERFAMILY SSF56655 11 254 2.09E-71 T 26-04-2016 RGE_RS15205 3e89250e8698f18f506349bd7464e749 258 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 11 255 4.7E-86 T 26-04-2016 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial GO:0000287|GO:0016020 KEGG: 00920+3.1.3.7 RGE_RS00980 4469e046643898b8cb2550818d35761e 635 Pfam PF00069 Protein kinase domain 95 252 1.4E-6 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS00980 4469e046643898b8cb2550818d35761e 635 Gene3D G3DSA:3.30.200.20 32 116 1.4E-4 T 26-04-2016 RGE_RS00980 4469e046643898b8cb2550818d35761e 635 SMART SM00220 34 306 1.8E-4 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS00980 4469e046643898b8cb2550818d35761e 635 SUPERFAMILY SSF56112 30 308 2.99E-25 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS00980 4469e046643898b8cb2550818d35761e 635 Gene3D G3DSA:1.10.510.10 117 296 7.8E-12 T 26-04-2016 RGE_RS00980 4469e046643898b8cb2550818d35761e 635 PANTHER PTHR24362:SF282 94 347 1.2E-14 T 26-04-2016 RGE_RS00980 4469e046643898b8cb2550818d35761e 635 PANTHER PTHR24362 94 347 1.2E-14 T 26-04-2016 RGE_RS03805 f240d58adfc84f5893520cec61c915f3 648 Pfam PF00501 AMP-binding enzyme 11 466 7.8E-87 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS03805 f240d58adfc84f5893520cec61c915f3 648 Gene3D G3DSA:3.40.50.980 336 398 4.5E-24 T 26-04-2016 RGE_RS03805 f240d58adfc84f5893520cec61c915f3 648 Gene3D G3DSA:3.40.50.980 190 282 4.5E-24 T 26-04-2016 RGE_RS03805 f240d58adfc84f5893520cec61c915f3 648 SUPERFAMILY SSF56801 3 287 3.14E-105 T 26-04-2016 RGE_RS03805 f240d58adfc84f5893520cec61c915f3 648 SUPERFAMILY SSF56801 339 607 3.14E-105 T 26-04-2016 RGE_RS03805 f240d58adfc84f5893520cec61c915f3 648 PANTHER PTHR24096 3 612 1.4E-190 T 26-04-2016 RGE_RS03805 f240d58adfc84f5893520cec61c915f3 648 ProSitePatterns PS00455 Putative AMP-binding domain signature. 184 195 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS03805 f240d58adfc84f5893520cec61c915f3 648 Gene3D G3DSA:2.30.38.10 399 463 1.2E-17 T 26-04-2016 RGE_RS03805 f240d58adfc84f5893520cec61c915f3 648 PANTHER PTHR24096:SF151 3 612 1.4E-190 T 26-04-2016 RGE_RS03805 f240d58adfc84f5893520cec61c915f3 648 Gene3D G3DSA:3.40.50.980 3 189 1.8E-30 T 26-04-2016 RGE_RS20530 67f96c27a08f7c35a016bbaa806fa1d8 318 Gene3D G3DSA:3.40.1190.20 23 282 1.2E-44 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS20530 67f96c27a08f7c35a016bbaa806fa1d8 318 Pfam PF08543 Phosphomethylpyrimidine kinase 31 276 2.1E-39 T 26-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 RGE_RS20530 67f96c27a08f7c35a016bbaa806fa1d8 318 SUPERFAMILY SSF53613 23 286 2.03E-38 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS20530 67f96c27a08f7c35a016bbaa806fa1d8 318 PANTHER PTHR20858 30 276 9.0E-20 T 26-04-2016 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 PANTHER PTHR32089 168 516 3.6E-133 T 26-04-2016 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 SUPERFAMILY SSF58104 233 514 2.88E-69 T 26-04-2016 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 PANTHER PTHR32089:SF63 168 516 3.6E-133 T 26-04-2016 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 SMART SM00283 266 513 5.8E-84 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 SMART SM00304 213 265 3.0E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 Gene3D G3DSA:1.10.287.950 281 485 6.3E-57 T 26-04-2016 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 Pfam PF00672 HAMP domain 194 261 5.5E-11 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 512 6.2E-57 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 4.6E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 4.6E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 4.6E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 6 31 4.6E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS16750 707d677c05789b2a4e0c068f1c7e99f8 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 4.6E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19860 90b065055263864188df137ae58ccea4 605 SUPERFAMILY SSF50998 35 602 5.89E-167 T 26-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RGE_RS19860 90b065055263864188df137ae58ccea4 605 Pfam PF01011 PQQ enzyme repeat 90 123 1.6E-4 T 26-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RGE_RS19860 90b065055263864188df137ae58ccea4 605 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 25 562 2.8E-220 T 26-04-2016 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 RGE_RS19860 90b065055263864188df137ae58ccea4 605 Pfam PF13360 PQQ-like domain 138 218 6.1E-11 T 26-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RGE_RS19860 90b065055263864188df137ae58ccea4 605 SMART SM00564 136 168 0.2 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS19860 90b065055263864188df137ae58ccea4 605 SMART SM00564 182 219 63.0 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS19860 90b065055263864188df137ae58ccea4 605 SMART SM00564 272 319 76.0 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS19860 90b065055263864188df137ae58ccea4 605 SMART SM00564 84 117 40.0 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS19860 90b065055263864188df137ae58ccea4 605 PANTHER PTHR32303:SF6 404 573 5.5E-229 T 26-04-2016 RGE_RS19860 90b065055263864188df137ae58ccea4 605 PANTHER PTHR32303:SF6 4 221 5.5E-229 T 26-04-2016 RGE_RS19860 90b065055263864188df137ae58ccea4 605 PANTHER PTHR32303:SF6 247 368 5.5E-229 T 26-04-2016 RGE_RS19860 90b065055263864188df137ae58ccea4 605 PANTHER PTHR32303 404 573 5.5E-229 T 26-04-2016 RGE_RS19860 90b065055263864188df137ae58ccea4 605 PANTHER PTHR32303 4 221 5.5E-229 T 26-04-2016 RGE_RS19860 90b065055263864188df137ae58ccea4 605 PANTHER PTHR32303 247 368 5.5E-229 T 26-04-2016 RGE_RS19860 90b065055263864188df137ae58ccea4 605 Gene3D G3DSA:2.140.10.10 34 605 9.2E-159 T 26-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RGE_RS09005 f770c9205c195be14b874695f8490da6 466 SUPERFAMILY SSF56954 2 452 5.1E-103 T 26-04-2016 RGE_RS09005 f770c9205c195be14b874695f8490da6 466 Gene3D G3DSA:2.20.200.10 302 337 8.8E-21 T 26-04-2016 RGE_RS09005 f770c9205c195be14b874695f8490da6 466 Gene3D G3DSA:2.20.200.10 89 129 8.8E-21 T 26-04-2016 RGE_RS09005 f770c9205c195be14b874695f8490da6 466 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 3 452 2.9E-105 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS09005 f770c9205c195be14b874695f8490da6 466 Pfam PF02321 Outer membrane efflux protein 268 450 3.6E-30 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS09005 f770c9205c195be14b874695f8490da6 466 Pfam PF02321 Outer membrane efflux protein 52 242 1.9E-21 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS09005 f770c9205c195be14b874695f8490da6 466 Gene3D G3DSA:1.20.1600.10 130 301 2.1E-93 T 26-04-2016 RGE_RS09005 f770c9205c195be14b874695f8490da6 466 Gene3D G3DSA:1.20.1600.10 41 78 2.1E-93 T 26-04-2016 RGE_RS09005 f770c9205c195be14b874695f8490da6 466 Gene3D G3DSA:1.20.1600.10 339 453 2.1E-93 T 26-04-2016 RGE_RS09005 f770c9205c195be14b874695f8490da6 466 PANTHER PTHR30203 42 452 8.5E-103 T 26-04-2016 RGE_RS09005 f770c9205c195be14b874695f8490da6 466 PANTHER PTHR30203:SF15 42 452 8.5E-103 T 26-04-2016 RGE_RS06040 6b5cdfbb838f1cd7252049fc0f009024 218 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 80 2.7E-19 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS06040 6b5cdfbb838f1cd7252049fc0f009024 218 Gene3D G3DSA:1.20.120.530 84 215 2.4E-32 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS06040 6b5cdfbb838f1cd7252049fc0f009024 218 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 1.9E-5 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS06040 6b5cdfbb838f1cd7252049fc0f009024 218 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 1.9E-5 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS06040 6b5cdfbb838f1cd7252049fc0f009024 218 PANTHER PTHR11751:SF362 18 107 6.1E-27 T 26-04-2016 RGE_RS06040 6b5cdfbb838f1cd7252049fc0f009024 218 SUPERFAMILY SSF46785 12 84 4.79E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS06040 6b5cdfbb838f1cd7252049fc0f009024 218 Pfam PF07729 FCD domain 90 211 1.2E-28 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS06040 6b5cdfbb838f1cd7252049fc0f009024 218 PANTHER PTHR11751 18 107 6.1E-27 T 26-04-2016 RGE_RS06040 6b5cdfbb838f1cd7252049fc0f009024 218 SMART SM00895 90 212 1.3E-21 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS06040 6b5cdfbb838f1cd7252049fc0f009024 218 SMART SM00345 22 80 1.8E-16 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS06040 6b5cdfbb838f1cd7252049fc0f009024 218 SUPERFAMILY SSF48008 87 214 2.88E-27 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS06040 6b5cdfbb838f1cd7252049fc0f009024 218 Gene3D G3DSA:1.10.10.10 9 81 5.3E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 SUPERFAMILY SSF55424 455 575 1.68E-39 T 26-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 SUPERFAMILY SSF51905 113 447 2.1E-52 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 164 1.8E-68 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 374 388 1.8E-68 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 518 533 1.8E-68 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 540 560 1.8E-68 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 453 474 1.8E-68 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 285 310 1.8E-68 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 116 138 1.8E-68 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 417 424 1.8E-68 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 250 259 1.8E-68 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 115 571 3.6E-145 T 26-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PIRSF PIRSF000350 36 576 3.9E-84 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 457 565 4.2E-34 T 26-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 Gene3D G3DSA:3.50.50.60 266 380 6.3E-27 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 Pfam PF00364 Biotin-requiring enzyme 5 76 1.8E-21 T 26-04-2016 IPR000089 Biotin/lipoyl attachment RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 Gene3D G3DSA:3.50.50.60 114 258 3.6E-63 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 Gene3D G3DSA:3.50.50.60 381 450 3.6E-63 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 SUPERFAMILY SSF51230 2 95 3.75E-24 T 26-04-2016 IPR011053 Single hybrid motif RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 116 437 7.2E-56 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 402 424 4.2E-37 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 265 4.2E-37 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 373 389 4.2E-37 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 285 303 4.2E-37 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 117 136 4.2E-37 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PANTHER PTHR22912:SF160 101 569 6.6E-238 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 150 160 - T 26-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 Gene3D G3DSA:3.30.390.30 451 570 7.6E-47 T 26-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 Gene3D G3DSA:2.40.50.100 2 95 3.5E-23 T 26-04-2016 RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 26-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RGE_RS11535 788d82306d1562e69a44e92dfb00eeb9 581 PANTHER PTHR22912 101 569 6.6E-238 T 26-04-2016 RGE_RS04540 4f7d6baf6e69fbcdcb46757cc10fd078 181 Pfam PF09626 Dihaem cytochrome c 63 172 5.6E-37 T 26-04-2016 IPR018588 Dihaem cytochrome c RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 SUPERFAMILY SSF47384 301 382 8.44E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 SUPERFAMILY SSF55874 372 534 3.67E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 428 534 1.0E-22 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 477 1.1E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 520 533 1.1E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 491 1.1E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 496 514 1.1E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 SMART SM00388 314 382 2.4E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 Pfam PF00512 His Kinase A (phospho-acceptor) domain 315 382 6.3E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 Gene3D G3DSA:3.30.565.10 387 534 2.9E-43 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 SMART SM00387 424 535 1.6E-33 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 Gene3D G3DSA:1.10.287.130 306 378 1.6E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 Pfam PF05231 MASE1 22 259 2.8E-11 T 26-04-2016 IPR007895 MASE1 RGE_RS17940 c26d46fe7b1c9136b6b5f757711c8bb0 535 PANTHER PTHR24423 293 535 3.6E-70 T 26-04-2016 RGE_RS19190 60f7152662ed555385949f6820d85c31 385 PANTHER PTHR23150 193 319 2.3E-18 T 26-04-2016 RGE_RS19190 60f7152662ed555385949f6820d85c31 385 Pfam PF03781 Sulfatase-modifying factor enzyme 1 189 326 1.7E-16 T 26-04-2016 IPR005532 Sulfatase-modifying factor enzyme RGE_RS19190 60f7152662ed555385949f6820d85c31 385 PANTHER PTHR23150:SF24 193 319 2.3E-18 T 26-04-2016 RGE_RS19190 60f7152662ed555385949f6820d85c31 385 Gene3D G3DSA:3.90.1580.10 316 383 1.7E-5 T 26-04-2016 IPR005532 Sulfatase-modifying factor enzyme RGE_RS19190 60f7152662ed555385949f6820d85c31 385 Gene3D G3DSA:3.90.1580.10 171 315 3.7E-27 T 26-04-2016 IPR005532 Sulfatase-modifying factor enzyme RGE_RS19190 60f7152662ed555385949f6820d85c31 385 SUPERFAMILY SSF56436 171 383 2.45E-37 T 26-04-2016 IPR016187 C-type lectin fold RGE_RS11805 c49872dfe6ec0b5446caf148011d40e1 216 Gene3D G3DSA:1.10.357.10 10 178 1.8E-32 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS11805 c49872dfe6ec0b5446caf148011d40e1 216 PANTHER PTHR30055 1 180 1.8E-25 T 26-04-2016 RGE_RS11805 c49872dfe6ec0b5446caf148011d40e1 216 SUPERFAMILY SSF46689 5 86 6.16E-16 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS11805 c49872dfe6ec0b5446caf148011d40e1 216 SUPERFAMILY SSF48498 82 188 1.13E-10 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS11805 c49872dfe6ec0b5446caf148011d40e1 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 5.5E-10 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 SUPERFAMILY SSF52540 12 279 3.15E-86 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 PANTHER PTHR23115:SF69 253 468 4.2E-217 T 26-04-2016 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 PANTHER PTHR23115:SF69 1 187 4.2E-217 T 26-04-2016 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 Gene3D G3DSA:3.40.50.300 12 284 3.6E-66 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 Gene3D G3DSA:2.40.30.10 295 395 8.3E-19 T 26-04-2016 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 SUPERFAMILY SSF50447 263 393 4.24E-25 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 Gene3D G3DSA:3.30.70.870 397 465 1.3E-12 T 26-04-2016 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 7 533 50.581 T 26-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 PANTHER PTHR23115 253 468 4.2E-217 T 26-04-2016 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 PANTHER PTHR23115 1 187 4.2E-217 T 26-04-2016 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 20 151 1.3E-23 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 SUPERFAMILY SSF54980 394 465 3.17E-14 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 Pfam PF16658 Class II release factor RF3, C-terminal domain 389 520 2.0E-41 T 26-04-2016 IPR032090 Peptide chain release factor 3, C-terminal RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 11 535 2.1E-210 T 26-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 Pfam PF00009 Elongation factor Tu GTP binding domain 16 279 2.1E-51 T 26-04-2016 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 PRINTS PR00315 GTP-binding elongation factor signature 18 31 3.7E-11 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 PRINTS PR00315 GTP-binding elongation factor signature 104 115 3.7E-11 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 PRINTS PR00315 GTP-binding elongation factor signature 88 98 3.7E-11 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 PRINTS PR00315 GTP-binding elongation factor signature 68 76 3.7E-11 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 PRINTS PR00315 GTP-binding elongation factor signature 140 149 3.7E-11 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS00445 db6994a4f9d328096c049a6d6cc3676f 546 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 - T 26-04-2016 IPR031157 Tr-type G domain, conserved site RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 SUPERFAMILY SSF52440 559 678 5.04E-50 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1076 13.265 T 26-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Gene3D G3DSA:1.10.1030.10 407 541 7.7E-49 T 26-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 SUPERFAMILY SSF52440 1 127 2.73E-50 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Gene3D G3DSA:3.40.50.20 3 108 8.4E-46 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Gene3D G3DSA:3.40.50.1380 945 1080 9.7E-39 T 26-04-2016 IPR011607 Methylglyoxal synthase-like domain RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Gene3D G3DSA:3.30.1490.20 142 206 2.2E-24 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Gene3D G3DSA:3.30.1490.20 689 747 3.6E-26 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 846 853 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 304 311 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 SMART SM01096 426 550 3.4E-69 T 26-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Gene3D G3DSA:3.30.470.20 207 406 1.7E-77 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Gene3D G3DSA:3.30.470.20 748 942 6.9E-78 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 2.0E-65 T 26-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 246 263 2.0E-65 T 26-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 2.0E-65 T 26-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 304 333 2.0E-65 T 26-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 175 187 2.0E-65 T 26-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 211 230 2.0E-65 T 26-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 387 405 2.0E-65 T 26-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 SUPERFAMILY SSF52335 943 1079 1.19E-35 T 26-04-2016 IPR011607 Methylglyoxal synthase-like domain RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 PANTHER PTHR11405 1 1079 0.0 T 26-04-2016 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 SUPERFAMILY SSF56059 128 408 1.15E-105 T 26-04-2016 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1061 0.0 T 26-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 PANTHER PTHR11405:SF5 1 1079 0.0 T 26-04-2016 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Pfam PF02142 MGS-like domain 964 1050 7.2E-18 T 26-04-2016 IPR011607 Methylglyoxal synthase-like domain RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 429 550 2.4E-38 T 26-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 SUPERFAMILY SSF56059 676 941 4.42E-103 T 26-04-2016 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 SMART SM00851 963 1050 1.8E-27 T 26-04-2016 IPR011607 Methylglyoxal synthase-like domain RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Gene3D G3DSA:3.40.50.20 542 665 2.7E-62 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1071 13.177 T 26-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 SUPERFAMILY SSF48108 403 556 2.75E-49 T 26-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 676 883 1.1E-39 T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 341 3.7E-70 T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 171 185 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS16205 b948a8197d6244fe6d3459e64203665c 1081 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 712 726 - T 26-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RGE_RS14925 fe52c514f197bf3c99342b2bf4f48ac8 801 SUPERFAMILY SSF56935 149 801 1.44E-98 T 26-04-2016 RGE_RS14925 fe52c514f197bf3c99342b2bf4f48ac8 801 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 159 801 2.0E-98 T 26-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 RGE_RS14925 fe52c514f197bf3c99342b2bf4f48ac8 801 Gene3D G3DSA:2.170.130.10 149 270 3.3E-25 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14925 fe52c514f197bf3c99342b2bf4f48ac8 801 Pfam PF07715 TonB-dependent Receptor Plug Domain 157 256 7.1E-12 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14925 fe52c514f197bf3c99342b2bf4f48ac8 801 PANTHER PTHR32552 88 125 1.2E-151 T 26-04-2016 RGE_RS14925 fe52c514f197bf3c99342b2bf4f48ac8 801 PANTHER PTHR32552 149 801 1.2E-151 T 26-04-2016 RGE_RS14925 fe52c514f197bf3c99342b2bf4f48ac8 801 Gene3D G3DSA:2.40.170.20 273 801 2.6E-91 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14925 fe52c514f197bf3c99342b2bf4f48ac8 801 PANTHER PTHR32552:SF14 88 125 1.2E-151 T 26-04-2016 IPR030149 TonB-dependent siderophore receptor FcuA/FatA GO:0004872|GO:0005506|GO:0009279|GO:0015891|GO:0016021 RGE_RS14925 fe52c514f197bf3c99342b2bf4f48ac8 801 PANTHER PTHR32552:SF14 149 801 1.2E-151 T 26-04-2016 IPR030149 TonB-dependent siderophore receptor FcuA/FatA GO:0004872|GO:0005506|GO:0009279|GO:0015891|GO:0016021 RGE_RS14925 fe52c514f197bf3c99342b2bf4f48ac8 801 SMART SM00965 62 112 4.3E-15 T 26-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RGE_RS14925 fe52c514f197bf3c99342b2bf4f48ac8 801 Pfam PF00593 TonB dependent receptor 559 799 6.4E-24 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14925 fe52c514f197bf3c99342b2bf4f48ac8 801 Pfam PF07660 Secretin and TonB N terminus short domain 63 111 2.2E-9 T 26-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RGE_RS15625 a5a855d1ea8ad6cb33f3bd25a354acb8 746 SUPERFAMILY SSF53850 170 679 3.62E-76 T 26-04-2016 RGE_RS15625 a5a855d1ea8ad6cb33f3bd25a354acb8 746 SUPERFAMILY SSF53850 44 134 3.62E-76 T 26-04-2016 RGE_RS15625 a5a855d1ea8ad6cb33f3bd25a354acb8 746 PANTHER PTHR30290 168 211 9.3E-52 T 26-04-2016 RGE_RS15625 a5a855d1ea8ad6cb33f3bd25a354acb8 746 PANTHER PTHR30290 239 324 9.3E-52 T 26-04-2016 RGE_RS15625 a5a855d1ea8ad6cb33f3bd25a354acb8 746 PANTHER PTHR30290 118 132 9.3E-52 T 26-04-2016 RGE_RS15625 a5a855d1ea8ad6cb33f3bd25a354acb8 746 PANTHER PTHR30290 1 94 9.3E-52 T 26-04-2016 RGE_RS15625 a5a855d1ea8ad6cb33f3bd25a354acb8 746 PANTHER PTHR30290 346 702 9.3E-52 T 26-04-2016 RGE_RS15625 a5a855d1ea8ad6cb33f3bd25a354acb8 746 Gene3D G3DSA:3.10.105.10 417 661 1.7E-43 T 26-04-2016 RGE_RS15625 a5a855d1ea8ad6cb33f3bd25a354acb8 746 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 169 605 2.2E-43 T 26-04-2016 IPR000914 Solute-binding protein family 5 domain RGE_RS15625 a5a855d1ea8ad6cb33f3bd25a354acb8 746 Gene3D G3DSA:3.90.76.10 49 307 8.9E-19 T 26-04-2016 RGE_RS10205 6709061f691d33f0243071e339511bcd 448 Pfam PF14535 AMP-binding enzyme C-terminal domain 351 443 1.1E-23 T 26-04-2016 IPR028154 AMP-dependent ligase, C-terminal RGE_RS10205 6709061f691d33f0243071e339511bcd 448 PANTHER PTHR36932 14 392 1.4E-67 T 26-04-2016 RGE_RS10205 6709061f691d33f0243071e339511bcd 448 Gene3D G3DSA:3.30.300.30 341 443 2.1E-31 T 26-04-2016 RGE_RS10205 6709061f691d33f0243071e339511bcd 448 Pfam PF00501 AMP-binding enzyme 94 302 4.5E-13 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS10205 6709061f691d33f0243071e339511bcd 448 Gene3D G3DSA:3.40.50.980 99 262 3.6E-12 T 26-04-2016 RGE_RS10205 6709061f691d33f0243071e339511bcd 448 SUPERFAMILY SSF56801 40 414 6.41E-50 T 26-04-2016 RGE_RS10205 6709061f691d33f0243071e339511bcd 448 PANTHER PTHR36932:SF1 14 392 1.4E-67 T 26-04-2016 RGE_RS16670 996df0233b70092b325a10bb95103410 209 Gene3D G3DSA:3.40.50.170 1 194 8.4E-71 T 26-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS16670 996df0233b70092b325a10bb95103410 209 SUPERFAMILY SSF53328 2 193 2.49E-64 T 26-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS16670 996df0233b70092b325a10bb95103410 209 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 191 1.8E-73 T 26-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 RGE_RS16670 996df0233b70092b325a10bb95103410 209 Pfam PF00551 Formyl transferase 2 183 1.1E-58 T 26-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS16670 996df0233b70092b325a10bb95103410 209 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 189 31.882 T 26-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 RGE_RS16670 996df0233b70092b325a10bb95103410 209 PANTHER PTHR10520 1 195 6.4E-93 T 26-04-2016 RGE_RS04805 36fd5c91e02740e10cf0963f3cb84a42 558 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 38 54 - T 26-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS04805 36fd5c91e02740e10cf0963f3cb84a42 558 SMART SM00917 420 555 5.2E-15 T 26-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS04805 36fd5c91e02740e10cf0963f3cb84a42 558 Gene3D G3DSA:3.20.20.70 9 392 2.2E-132 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS04805 36fd5c91e02740e10cf0963f3cb84a42 558 PANTHER PTHR10277:SF28 1 554 2.1E-239 T 26-04-2016 RGE_RS04805 36fd5c91e02740e10cf0963f3cb84a42 558 PANTHER PTHR10277 1 554 2.1E-239 T 26-04-2016 RGE_RS04805 36fd5c91e02740e10cf0963f3cb84a42 558 SUPERFAMILY SSF89000 386 435 5.49E-14 T 26-04-2016 RGE_RS04805 36fd5c91e02740e10cf0963f3cb84a42 558 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 6 556 49.153 T 26-04-2016 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS04805 36fd5c91e02740e10cf0963f3cb84a42 558 SUPERFAMILY SSF110921 468 553 6.93E-19 T 26-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS04805 36fd5c91e02740e10cf0963f3cb84a42 558 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 241 254 - T 26-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS04805 36fd5c91e02740e10cf0963f3cb84a42 558 SUPERFAMILY SSF51569 20 328 8.2E-92 T 26-04-2016 RGE_RS04805 36fd5c91e02740e10cf0963f3cb84a42 558 Pfam PF00682 HMGL-like 32 309 1.1E-66 T 26-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RGE_RS04805 36fd5c91e02740e10cf0963f3cb84a42 558 Pfam PF08502 LeuA allosteric (dimerisation) domain 421 553 7.2E-15 T 26-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS13780 66cf7c612131ba15b1c2074ab9c1c3c5 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 1.7E-8 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13780 66cf7c612131ba15b1c2074ab9c1c3c5 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.7E-8 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13780 66cf7c612131ba15b1c2074ab9c1c3c5 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.7E-8 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13780 66cf7c612131ba15b1c2074ab9c1c3c5 260 PIRSF PIRSF000094 1 260 2.0E-108 T 26-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RGE_RS13780 66cf7c612131ba15b1c2074ab9c1c3c5 260 SUPERFAMILY SSF51735 6 252 2.81E-60 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS13780 66cf7c612131ba15b1c2074ab9c1c3c5 260 PANTHER PTHR24322 159 191 5.8E-57 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13780 66cf7c612131ba15b1c2074ab9c1c3c5 260 PANTHER PTHR24322 11 143 5.8E-57 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13780 66cf7c612131ba15b1c2074ab9c1c3c5 260 Gene3D G3DSA:3.40.50.720 2 252 1.3E-59 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS13780 66cf7c612131ba15b1c2074ab9c1c3c5 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 252 3.9E-82 T 26-04-2016 RGE_RS13780 66cf7c612131ba15b1c2074ab9c1c3c5 260 PANTHER PTHR24322:SF317 159 191 5.8E-57 T 26-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RGE_RS13780 66cf7c612131ba15b1c2074ab9c1c3c5 260 PANTHER PTHR24322:SF317 11 143 5.8E-57 T 26-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RGE_RS08695 c6e42c575eb977a879d260809f564297 131 Gene3D G3DSA:3.40.1650.10 1 131 2.3E-33 T 26-04-2016 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 RGE_RS08695 c6e42c575eb977a879d260809f564297 131 SUPERFAMILY SSF102546 1 131 1.44E-38 T 26-04-2016 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 RGE_RS08695 c6e42c575eb977a879d260809f564297 131 PANTHER PTHR37831:SF1 2 131 8.8E-44 T 26-04-2016 RGE_RS08695 c6e42c575eb977a879d260809f564297 131 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 131 29.144 T 26-04-2016 IPR023064 D-ribose pyranase GO:0016872 UniPathway: UPA00916 RGE_RS08695 c6e42c575eb977a879d260809f564297 131 PANTHER PTHR37831 2 131 8.8E-44 T 26-04-2016 RGE_RS08695 c6e42c575eb977a879d260809f564297 131 Pfam PF05025 RbsD / FucU transport protein family 1 130 6.6E-42 T 26-04-2016 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 TIGRFAM TIGR01807 CM_P2: chorismate mutase 12 85 1.4E-24 T 26-04-2016 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626|UniPathway: UPA00120|UniPathway: UPA00121 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 PANTHER PTHR21022 9 367 5.3E-122 T 26-04-2016 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 Pfam PF01842 ACT domain 287 351 1.6E-7 T 26-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 SUPERFAMILY SSF53850 96 274 9.44E-56 T 26-04-2016 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 Pfam PF00800 Prephenate dehydratase 97 272 1.2E-57 T 26-04-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 SMART SM00830 16 95 9.9E-30 T 26-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 Gene3D G3DSA:1.20.59.10 5 92 2.3E-23 T 26-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 313 320 - T 26-04-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 SUPERFAMILY SSF48600 11 98 1.19E-21 T 26-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 Gene3D G3DSA:3.40.190.10 93 181 2.5E-30 T 26-04-2016 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 Gene3D G3DSA:3.30.70.260 280 366 1.2E-28 T 26-04-2016 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 SUPERFAMILY SSF55021 276 365 1.29E-24 T 26-04-2016 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 PANTHER PTHR21022:SF0 9 367 5.3E-122 T 26-04-2016 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 Gene3D G3DSA:3.40.190.10 182 259 1.3E-25 T 26-04-2016 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 Pfam PF01817 Chorismate mutase type II 16 92 8.0E-23 T 26-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RGE_RS06820 e6eaaf7b719a1a66dd64cd21e32ffd45 368 PIRSF PIRSF001500 5 367 1.0E-126 T 26-04-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 SUPERFAMILY SSF82693 56 151 3.45E-19 T 26-04-2016 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 SUPERFAMILY SSF82866 823 1044 5.1E-44 T 26-04-2016 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 468 491 3.7E-15 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 54 72 3.7E-15 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 387 408 3.7E-15 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 493 516 3.7E-15 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 PRINTS PR00702 Acriflavin resistance protein family signature 415 439 3.7E-15 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 Gene3D G3DSA:3.30.70.1430 56 154 1.0E-21 T 26-04-2016 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 PANTHER PTHR32063:SF18 16 1046 0.0 T 26-04-2016 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 Gene3D G3DSA:3.30.2090.10 739 822 3.7E-16 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 Gene3D G3DSA:3.30.2090.10 201 286 7.2E-14 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 Gene3D G3DSA:1.10.3850.10 831 1042 5.7E-47 T 26-04-2016 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 PANTHER PTHR32063 16 1046 0.0 T 26-04-2016 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 SUPERFAMILY SSF82693 152 198 2.09E-19 T 26-04-2016 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 Gene3D G3DSA:3.30.70.1430 590 674 1.9E-4 T 26-04-2016 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 Pfam PF00873 AcrB/AcrD/AcrF family 21 1038 1.6E-166 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 Gene3D G3DSA:1.20.1640.10 307 525 5.4E-42 T 26-04-2016 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 SUPERFAMILY SSF82714 739 824 1.26E-15 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 SUPERFAMILY SSF82714 201 285 4.32E-11 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 SUPERFAMILY SSF82866 315 521 1.14E-33 T 26-04-2016 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 SUPERFAMILY SSF82693 290 345 2.09E-19 T 26-04-2016 RGE_RS13620 250bfe9e4ee0ff26abab2dbe51d525d5 1051 SUPERFAMILY SSF82693 589 688 5.75E-6 T 26-04-2016 RGE_RS11660 ac596da61cd0952b0f6f12f68aa853d1 176 SUPERFAMILY SSF55068 3 167 2.22E-68 T 26-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RGE_RS11660 ac596da61cd0952b0f6f12f68aa853d1 176 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 5 155 2.7E-54 T 26-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RGE_RS11660 ac596da61cd0952b0f6f12f68aa853d1 176 Pfam PF01625 Peptide methionine sulfoxide reductase 5 155 5.5E-61 T 26-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RGE_RS11660 ac596da61cd0952b0f6f12f68aa853d1 176 Gene3D G3DSA:3.30.1060.10 3 155 1.1E-66 T 26-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RGE_RS11660 ac596da61cd0952b0f6f12f68aa853d1 176 PANTHER PTHR10173 1 155 3.5E-69 T 26-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 RGE_RS11660 ac596da61cd0952b0f6f12f68aa853d1 176 PANTHER PTHR10173:SF34 1 155 3.5E-69 T 26-04-2016 RGE_RS11660 ac596da61cd0952b0f6f12f68aa853d1 176 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 3 160 34.425 T 26-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RGE_RS05130 212ced219d984cc361aaa08d784ce146 198 PANTHER PTHR10134:SF8 1 197 1.6E-81 T 26-04-2016 RGE_RS05130 212ced219d984cc361aaa08d784ce146 198 SUPERFAMILY SSF50022 29 193 1.26E-41 T 26-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RGE_RS05130 212ced219d984cc361aaa08d784ce146 198 Gene3D G3DSA:2.102.10.10 6 194 4.9E-43 T 26-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RGE_RS05130 212ced219d984cc361aaa08d784ce146 198 Pfam PF00355 Rieske [2Fe-2S] domain 55 180 1.8E-11 T 26-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RGE_RS05130 212ced219d984cc361aaa08d784ce146 198 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 3 39 2.2E-7 T 26-04-2016 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RGE_RS05130 212ced219d984cc361aaa08d784ce146 198 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 193 2.5E-68 T 26-04-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RGE_RS05130 212ced219d984cc361aaa08d784ce146 198 PANTHER PTHR10134 1 197 1.6E-81 T 26-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 RGE_RS05130 212ced219d984cc361aaa08d784ce146 198 PRINTS PR00162 Rieske 2Fe-2S subunit signature 152 164 1.6E-7 T 26-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RGE_RS05130 212ced219d984cc361aaa08d784ce146 198 PRINTS PR00162 Rieske 2Fe-2S subunit signature 165 177 1.6E-7 T 26-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RGE_RS05130 212ced219d984cc361aaa08d784ce146 198 PRINTS PR00162 Rieske 2Fe-2S subunit signature 120 131 1.6E-7 T 26-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RGE_RS05755 09c06287e2b1b7586965bfd1f3960c4f 377 PANTHER PTHR21152 25 374 1.3E-62 T 26-04-2016 RGE_RS05755 09c06287e2b1b7586965bfd1f3960c4f 377 PIRSF PIRSF000524 17 377 6.7E-40 T 26-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RGE_RS05755 09c06287e2b1b7586965bfd1f3960c4f 377 Gene3D G3DSA:3.90.1150.10 268 375 1.6E-6 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS05755 09c06287e2b1b7586965bfd1f3960c4f 377 SUPERFAMILY SSF53383 10 374 5.98E-73 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS05755 09c06287e2b1b7586965bfd1f3960c4f 377 Pfam PF00266 Aminotransferase class-V 22 297 7.6E-11 T 26-04-2016 IPR000192 Aminotransferase class V domain RGE_RS05755 09c06287e2b1b7586965bfd1f3960c4f 377 Gene3D G3DSA:3.40.640.10 21 264 1.4E-44 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS05755 09c06287e2b1b7586965bfd1f3960c4f 377 PANTHER PTHR21152:SF21 25 374 1.3E-62 T 26-04-2016 RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 Pfam PF10531 SLBB domain 294 344 1.2E-9 T 26-04-2016 IPR019554 Soluble ligand binding domain RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 Pfam PF13237 4Fe-4S dicluster domain 378 430 3.5E-7 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 PANTHER PTHR11780:SF1 1 459 1.1E-148 T 26-04-2016 RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 Gene3D G3DSA:1.10.1060.10 364 451 4.6E-17 T 26-04-2016 RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 PANTHER PTHR11780 1 459 1.1E-148 T 26-04-2016 RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 SUPERFAMILY SSF142019 91 302 2.09E-54 T 26-04-2016 RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 Hamap MF_00461 Electron transport complex subunit RsxC [rsxC]. 1 462 136.082 T 26-04-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 SUPERFAMILY SSF46548 336 449 8.63E-19 T 26-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 Pfam PF13375 RnfC Barrel sandwich hybrid domain 11 106 4.9E-28 T 26-04-2016 IPR026902 RnfC Barrel sandwich hybrid domain RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 379 390 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 419 430 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 136 280 5.4E-47 T 26-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain RGE_RS10230 f483cbe2ab36b695b6c9899fc2ebd23e 462 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 11 449 3.1E-146 T 26-04-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 SUPERFAMILY SSF56042 950 1068 2.09E-48 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 SUPERFAMILY SSF56042 825 921 2.09E-48 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 PANTHER PTHR10099 950 1326 0.0 T 26-04-2016 RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 PANTHER PTHR10099 7 925 0.0 T 26-04-2016 RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 Pfam PF02769 AIR synthase related protein, C-terminal domain 443 600 7.8E-27 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 Pfam PF02769 AIR synthase related protein, C-terminal domain 841 1001 1.1E-14 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 11 1324 0.0 T 26-04-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 Gene3D G3DSA:3.30.1330.10 654 818 2.1E-14 T 26-04-2016 IPR016188 PurM-like, N-terminal domain RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 Gene3D G3DSA:3.30.1330.10 223 433 9.7E-41 T 26-04-2016 IPR016188 PurM-like, N-terminal domain RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 SUPERFAMILY SSF52317 1071 1323 1.32E-86 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 SUPERFAMILY SSF109736 168 232 5.75E-22 T 26-04-2016 RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 8 1326 20.112 T 26-04-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 SUPERFAMILY SSF55326 629 824 1.05E-64 T 26-04-2016 RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 SUPERFAMILY SSF82697 9 162 2.56E-36 T 26-04-2016 RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 SUPERFAMILY SSF56042 442 664 2.69E-53 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1074 1323 3.0E-95 T 26-04-2016 RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 SUPERFAMILY SSF55326 233 437 7.67E-59 T 26-04-2016 RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 SMART SM01211 1074 1325 3.9E-134 T 26-04-2016 RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 Gene3D G3DSA:3.40.50.880 1075 1301 3.2E-10 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 PANTHER PTHR10099:SF5 950 1326 0.0 T 26-04-2016 RGE_RS11615 79539784ffc75f5013e49d051a853236 1326 PANTHER PTHR10099:SF5 7 925 0.0 T 26-04-2016 RGE_RS02030 1803cc39063a35164d29d5888358697d 287 TIGRFAM TIGR03006 pepcterm_polyde: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily 8 276 6.4E-137 T 26-04-2016 IPR014344 PEP-CTERM locus, polysaccharide deactylase RGE_RS02030 1803cc39063a35164d29d5888358697d 287 SUPERFAMILY SSF88713 8 252 2.97E-48 T 26-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RGE_RS02030 1803cc39063a35164d29d5888358697d 287 PANTHER PTHR10587 41 135 8.2E-25 T 26-04-2016 RGE_RS02030 1803cc39063a35164d29d5888358697d 287 Gene3D G3DSA:3.20.20.370 6 275 1.5E-58 T 26-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RGE_RS02030 1803cc39063a35164d29d5888358697d 287 Pfam PF11959 Domain of unknown function (DUF3473) 150 276 9.8E-53 T 26-04-2016 IPR022560 Domain of unknown function DUF3473 RGE_RS02030 1803cc39063a35164d29d5888358697d 287 Pfam PF01522 Polysaccharide deacetylase 40 133 7.3E-21 T 26-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RGE_RS22640 92cd5d28c61e2c2225436f30510a887d 147 Pfam PF02201 SWIB/MDM2 domain 74 146 2.8E-26 T 26-04-2016 IPR003121 SWIB/MDM2 domain GO:0005515 RGE_RS22640 92cd5d28c61e2c2225436f30510a887d 147 SUPERFAMILY SSF47592 64 146 4.36E-25 T 26-04-2016 IPR003121 SWIB/MDM2 domain GO:0005515 RGE_RS22640 92cd5d28c61e2c2225436f30510a887d 147 SMART SM00151 72 147 2.1E-26 T 26-04-2016 IPR019835 SWIB domain RGE_RS22640 92cd5d28c61e2c2225436f30510a887d 147 Gene3D G3DSA:1.10.245.10 64 146 1.6E-29 T 26-04-2016 IPR003121 SWIB/MDM2 domain GO:0005515 RGE_RS22640 92cd5d28c61e2c2225436f30510a887d 147 PANTHER PTHR13844 53 146 1.5E-22 T 26-04-2016 RGE_RS14640 ea99a15dd4639d642b97752426da9995 215 Pfam PF01551 Peptidase family M23 78 172 2.1E-14 T 26-04-2016 IPR016047 Peptidase M23 RGE_RS14640 ea99a15dd4639d642b97752426da9995 215 PANTHER PTHR21666 81 170 1.5E-12 T 26-04-2016 RGE_RS14640 ea99a15dd4639d642b97752426da9995 215 Gene3D G3DSA:2.70.70.10 47 185 4.5E-21 T 26-04-2016 RGE_RS14640 ea99a15dd4639d642b97752426da9995 215 SUPERFAMILY SSF51261 81 171 8.37E-18 T 26-04-2016 IPR011055 Duplicated hybrid motif RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 Gene3D G3DSA:3.40.50.300 212 351 1.6E-49 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 Pfam PF00570 HRDC domain 568 633 2.8E-24 T 26-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 Gene3D G3DSA:3.40.50.300 11 211 1.9E-49 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 Pfam PF00271 Helicase conserved C-terminal domain 232 338 2.2E-16 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 SUPERFAMILY SSF52540 10 210 1.89E-36 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 11 635 1.3E-232 T 26-04-2016 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 SMART SM00956 433 539 2.0E-50 T 26-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 Pfam PF16124 RecQ zinc-binding 350 426 3.2E-16 T 26-04-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 Gene3D G3DSA:1.10.10.10 352 542 1.4E-56 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 SUPERFAMILY SSF47819 561 635 5.67E-24 T 26-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 Pfam PF09382 RQC domain 428 542 1.6E-38 T 26-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 SMART SM00341 563 637 5.6E-15 T 26-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 PANTHER PTHR13710:SF81 11 635 1.4E-280 T 26-04-2016 RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 Pfam PF00270 DEAD/DEAH box helicase 28 193 1.1E-16 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 SMART SM00487 20 224 7.0E-26 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 PANTHER PTHR13710 11 635 1.4E-280 T 26-04-2016 RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 SUPERFAMILY SSF52540 214 482 2.32E-62 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 SMART SM00490 257 338 1.3E-24 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 Gene3D G3DSA:1.10.150.80 567 634 3.5E-17 T 26-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RGE_RS22615 4c6c52d8fd0e44be92a25602f40ae5dd 637 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 13 489 2.4E-157 T 26-04-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 26 907 0.0 T 26-04-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 SUPERFAMILY SSF52016 642 907 8.83E-77 T 26-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 ProSitePatterns PS00450 Aconitase family signature 1. 433 449 - T 26-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 Pfam PF00694 Aconitase C-terminal domain 699 834 1.4E-37 T 26-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PANTHER PTHR11670:SF1 767 909 0.0 T 26-04-2016 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PANTHER PTHR11670:SF1 422 657 0.0 T 26-04-2016 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PANTHER PTHR11670:SF1 674 719 0.0 T 26-04-2016 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PANTHER PTHR11670:SF1 1 396 0.0 T 26-04-2016 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 Gene3D G3DSA:3.30.499.10 371 581 7.4E-64 T 26-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 Gene3D G3DSA:3.30.499.10 35 251 8.6E-75 T 26-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PRINTS PR00415 Aconitase family signature 499 512 1.15E-40 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PRINTS PR00415 Aconitase family signature 205 218 1.15E-40 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PRINTS PR00415 Aconitase family signature 437 448 1.15E-40 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PRINTS PR00415 Aconitase family signature 281 294 1.15E-40 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PRINTS PR00415 Aconitase family signature 175 183 1.15E-40 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PRINTS PR00415 Aconitase family signature 375 389 1.15E-40 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PRINTS PR00415 Aconitase family signature 295 308 1.15E-40 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PRINTS PR00415 Aconitase family signature 219 234 1.15E-40 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PRINTS PR00415 Aconitase family signature 151 164 1.15E-40 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 Pfam PF00330 Aconitase family (aconitate hydratase) 74 568 3.8E-175 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PANTHER PTHR11670 767 909 0.0 T 26-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PANTHER PTHR11670 422 657 0.0 T 26-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PANTHER PTHR11670 674 719 0.0 T 26-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 PANTHER PTHR11670 1 396 0.0 T 26-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 Gene3D G3DSA:3.40.1060.10 252 370 6.2E-35 T 26-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 ProSitePatterns PS01244 Aconitase family signature 2. 499 512 - T 26-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 SUPERFAMILY SSF53732 22 622 1.02E-209 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS18720 7cef32afb2c839b02f1d5c45534d5a77 909 Gene3D G3DSA:3.20.19.10 643 907 3.4E-71 T 26-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RGE_RS05925 4efe950ca2d45e6c5fbbf7ac408ac2f7 204 SUPERFAMILY SSF52833 1 79 1.32E-14 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS05925 4efe950ca2d45e6c5fbbf7ac408ac2f7 204 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 189 1.7E-9 T 26-04-2016 IPR004046 Glutathione S-transferase, C-terminal RGE_RS05925 4efe950ca2d45e6c5fbbf7ac408ac2f7 204 Pfam PF13417 Glutathione S-transferase, N-terminal domain 11 80 4.8E-5 T 26-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RGE_RS05925 4efe950ca2d45e6c5fbbf7ac408ac2f7 204 PANTHER PTHR11260:SF154 1 202 1.7E-81 T 26-04-2016 RGE_RS05925 4efe950ca2d45e6c5fbbf7ac408ac2f7 204 PANTHER PTHR11260 1 202 1.7E-81 T 26-04-2016 RGE_RS05925 4efe950ca2d45e6c5fbbf7ac408ac2f7 204 SUPERFAMILY SSF47616 81 198 1.25E-28 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS05925 4efe950ca2d45e6c5fbbf7ac408ac2f7 204 Gene3D G3DSA:3.40.30.10 1 88 4.1E-22 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS05925 4efe950ca2d45e6c5fbbf7ac408ac2f7 204 Gene3D G3DSA:1.20.1050.10 89 188 8.2E-40 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS06620 15f3dd484d18494eaae585e6cb4ac6a4 248 PANTHER PTHR32125:SF1 1 230 9.9E-94 T 26-04-2016 RGE_RS06620 15f3dd484d18494eaae585e6cb4ac6a4 248 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 228 2.0E-80 T 26-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RGE_RS06620 15f3dd484d18494eaae585e6cb4ac6a4 248 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 248 96.903 T 26-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RGE_RS06620 15f3dd484d18494eaae585e6cb4ac6a4 248 PIRSF PIRSF000386 1 245 6.4E-84 T 26-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RGE_RS06620 15f3dd484d18494eaae585e6cb4ac6a4 248 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 24 223 1.9E-53 T 26-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RGE_RS06620 15f3dd484d18494eaae585e6cb4ac6a4 248 SUPERFAMILY SSF75217 1 231 4.19E-84 T 26-04-2016 IPR029028 Alpha/beta knot methyltransferases RGE_RS06620 15f3dd484d18494eaae585e6cb4ac6a4 248 Gene3D G3DSA:3.40.1280.10 1 159 6.5E-59 T 26-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RGE_RS06620 15f3dd484d18494eaae585e6cb4ac6a4 248 Gene3D G3DSA:1.10.1270.20 163 246 3.2E-26 T 26-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RGE_RS06620 15f3dd484d18494eaae585e6cb4ac6a4 248 PANTHER PTHR32125 1 230 9.9E-94 T 26-04-2016 RGE_RS18175 cceb2c8e8e110fcbd2c8f7e17b7f9add 507 PANTHER PTHR33408 346 500 5.0E-50 T 26-04-2016 RGE_RS18175 cceb2c8e8e110fcbd2c8f7e17b7f9add 507 PANTHER PTHR33408 1 326 5.0E-50 T 26-04-2016 RGE_RS18175 cceb2c8e8e110fcbd2c8f7e17b7f9add 507 Pfam PF05598 Transposase domain (DUF772) 55 124 1.9E-16 T 26-04-2016 IPR008490 Transposase InsH, N-terminal RGE_RS18175 cceb2c8e8e110fcbd2c8f7e17b7f9add 507 Pfam PF13751 Transposase DDE domain 371 499 3.4E-30 T 26-04-2016 IPR025668 Transposase DDE domain RGE_RS18175 cceb2c8e8e110fcbd2c8f7e17b7f9add 507 PANTHER PTHR33408:SF2 346 500 5.0E-50 T 26-04-2016 RGE_RS18175 cceb2c8e8e110fcbd2c8f7e17b7f9add 507 PANTHER PTHR33408:SF2 1 326 5.0E-50 T 26-04-2016 RGE_RS21665 833a50cf7d7bc1e5294a09e30a44b544 60 Pfam PF12086 Protein of unknown function (DUF3563) 14 48 6.9E-9 T 26-04-2016 IPR021946 Protein of unknown function DUF3563 RGE_RS21525 1be75cf4d48f359d1f8684297580d851 296 PANTHER PTHR11825:SF38 11 289 6.8E-79 T 26-04-2016 RGE_RS21525 1be75cf4d48f359d1f8684297580d851 296 Pfam PF01063 Amino-transferase class IV 36 262 7.2E-39 T 26-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS21525 1be75cf4d48f359d1f8684297580d851 296 Gene3D G3DSA:3.30.470.10 9 128 2.0E-36 T 26-04-2016 RGE_RS21525 1be75cf4d48f359d1f8684297580d851 296 Gene3D G3DSA:3.20.10.10 134 290 2.6E-36 T 26-04-2016 RGE_RS21525 1be75cf4d48f359d1f8684297580d851 296 PANTHER PTHR11825 11 289 6.8E-79 T 26-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS21525 1be75cf4d48f359d1f8684297580d851 296 SUPERFAMILY SSF56752 10 289 2.49E-72 T 26-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS11385 18e248cb34059f94a9664dcf09bbe6f9 461 SMART SM00304 184 236 9.3E-7 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS11385 18e248cb34059f94a9664dcf09bbe6f9 461 PANTHER PTHR24421:SF1 247 453 2.1E-30 T 26-04-2016 RGE_RS11385 18e248cb34059f94a9664dcf09bbe6f9 461 PANTHER PTHR24421:SF1 8 53 2.1E-30 T 26-04-2016 RGE_RS11385 18e248cb34059f94a9664dcf09bbe6f9 461 PANTHER PTHR24421 247 453 2.1E-30 T 26-04-2016 RGE_RS11385 18e248cb34059f94a9664dcf09bbe6f9 461 PANTHER PTHR24421 8 53 2.1E-30 T 26-04-2016 RGE_RS11385 18e248cb34059f94a9664dcf09bbe6f9 461 Gene3D G3DSA:3.30.565.10 344 413 1.6E-5 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11385 18e248cb34059f94a9664dcf09bbe6f9 461 Pfam PF07730 Histidine kinase 252 317 2.2E-9 T 26-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RGE_RS11385 18e248cb34059f94a9664dcf09bbe6f9 461 SUPERFAMILY SSF55874 358 448 3.54E-11 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14635 3cb3a8563b5fa80b32fa67ba018dd363 302 Pfam PF00990 Diguanylate cyclase, GGDEF domain 144 289 5.2E-16 T 26-04-2016 IPR000160 GGDEF domain RGE_RS14635 3cb3a8563b5fa80b32fa67ba018dd363 302 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 145 255 8.5E-11 T 26-04-2016 IPR000160 GGDEF domain RGE_RS14635 3cb3a8563b5fa80b32fa67ba018dd363 302 SMART SM00267 132 301 6.3E-7 T 26-04-2016 IPR000160 GGDEF domain RGE_RS14635 3cb3a8563b5fa80b32fa67ba018dd363 302 SUPERFAMILY SSF55073 149 278 1.57E-15 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS14635 3cb3a8563b5fa80b32fa67ba018dd363 302 Gene3D G3DSA:3.30.70.270 145 287 2.3E-17 T 26-04-2016 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 SUPERFAMILY SSF118215 14 406 2.62E-120 T 26-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 PANTHER PTHR11958:SF49 6 432 8.2E-255 T 26-04-2016 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 41 56 - T 26-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 PANTHER PTHR11958 6 432 8.2E-255 T 26-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 300 323 - T 26-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 PRINTS PR00173 Glutamate-aspartate symporter signature 150 172 3.0E-27 T 26-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 PRINTS PR00173 Glutamate-aspartate symporter signature 12 32 3.0E-27 T 26-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 PRINTS PR00173 Glutamate-aspartate symporter signature 79 104 3.0E-27 T 26-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 PRINTS PR00173 Glutamate-aspartate symporter signature 297 323 3.0E-27 T 26-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 PRINTS PR00173 Glutamate-aspartate symporter signature 332 351 3.0E-27 T 26-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 PRINTS PR00173 Glutamate-aspartate symporter signature 197 216 3.0E-27 T 26-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 Pfam PF00375 Sodium:dicarboxylate symporter family 14 406 1.7E-112 T 26-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 Gene3D G3DSA:1.10.3860.10 9 410 7.3E-118 T 26-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RGE_RS10930 17e6fa72e94c62ea17caec55a40f240b 452 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 7 433 38.795 T 26-04-2016 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 Gene3D G3DSA:3.40.1190.10 468 702 6.8E-36 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 TIGRFAM TIGR02068 cya_phycin_syn: cyanophycin synthetase 3 852 0.0 T 26-04-2016 IPR011810 Cyanophycin synthetase GO:0005524|GO:0009059|GO:0016874 MetaCyc: PWY-7052 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 Gene3D G3DSA:3.90.190.20 712 837 3.5E-23 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 Gene3D G3DSA:3.30.470.20 201 318 3.0E-25 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 Gene3D G3DSA:3.30.470.20 382 442 3.0E-25 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 PANTHER PTHR23135 375 836 3.2E-106 T 26-04-2016 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 PANTHER PTHR23135:SF18 375 836 3.2E-106 T 26-04-2016 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 Pfam PF08245 Mur ligase middle domain 474 685 4.7E-21 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 Pfam PF02222 ATP-grasp domain 213 285 9.1E-6 T 26-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 SUPERFAMILY SSF53244 710 837 2.9E-24 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 SUPERFAMILY SSF53623 432 722 4.71E-41 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 SUPERFAMILY SSF56059 204 312 5.83E-34 T 26-04-2016 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 SUPERFAMILY SSF56059 374 457 5.83E-34 T 26-04-2016 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 Pfam PF02875 Mur ligase family, glutamate ligase domain 710 785 2.0E-10 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS19585 03c82bee496c2a6bed8d764f938cb805 861 SMART SM01209 203 323 0.0022 T 26-04-2016 RGE_RS00630 807dae3013b578eca9cbcbbd9168e79e 282 PANTHER PTHR37418:SF2 4 281 3.8E-101 T 26-04-2016 RGE_RS00630 807dae3013b578eca9cbcbbd9168e79e 282 Gene3D G3DSA:3.20.20.70 2 280 2.3E-100 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS00630 807dae3013b578eca9cbcbbd9168e79e 282 Pfam PF05853 beta-keto acid cleavage enzyme 6 278 5.7E-100 T 26-04-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24|UniPathway: UPA00870 RGE_RS00630 807dae3013b578eca9cbcbbd9168e79e 282 PANTHER PTHR37418 4 281 3.8E-101 T 26-04-2016 RGE_RS22540 c6f77657b9ca25881ab7991e615a3736 339 PANTHER PTHR24220 4 246 2.8E-138 T 26-04-2016 RGE_RS22540 c6f77657b9ca25881ab7991e615a3736 339 PANTHER PTHR24220:SF123 4 246 2.8E-138 T 26-04-2016 RGE_RS22540 c6f77657b9ca25881ab7991e615a3736 339 Gene3D G3DSA:3.40.50.300 3 241 7.1E-85 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22540 c6f77657b9ca25881ab7991e615a3736 339 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS22540 c6f77657b9ca25881ab7991e615a3736 339 Pfam PF12857 TOBE-like domain 268 329 1.8E-7 T 26-04-2016 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 RGE_RS22540 c6f77657b9ca25881ab7991e615a3736 339 Pfam PF00005 ABC transporter 19 164 7.4E-36 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS22540 c6f77657b9ca25881ab7991e615a3736 339 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 241 6.1E-123 T 26-04-2016 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 RGE_RS22540 c6f77657b9ca25881ab7991e615a3736 339 SMART SM00382 27 214 1.0E-19 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS22540 c6f77657b9ca25881ab7991e615a3736 339 SUPERFAMILY SSF52540 3 244 4.93E-89 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 70 126 6.5E-27 T 26-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 Pfam PF00361 Proton-conducting membrane transporter 138 428 4.6E-85 T 26-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PANTHER PTHR22773 1 618 2.5E-252 T 26-04-2016 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PANTHER PTHR22773:SF50 1 618 2.5E-252 T 26-04-2016 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 87 112 1.7E-65 T 26-04-2016 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 115 135 1.7E-65 T 26-04-2016 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 325 337 1.7E-65 T 26-04-2016 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 162 183 1.7E-65 T 26-04-2016 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 235 256 1.7E-65 T 26-04-2016 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 257 283 1.7E-65 T 26-04-2016 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 430 449 1.7E-65 T 26-04-2016 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 429 451 6.8E-14 T 26-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 63 87 6.8E-14 T 26-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 89 109 6.8E-14 T 26-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 275 297 6.8E-14 T 26-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RGE_RS07710 8a4eff31b6e0627055acb366beb69e9b 675 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 9 664 2.3E-243 T 26-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 Gene3D G3DSA:3.40.50.720 2 130 1.4E-32 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 SMART SM00881 9 104 1.1E-28 T 26-04-2016 IPR003781 CoA-binding GO:0048037 RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 Gene3D G3DSA:3.40.630.30 733 883 1.1E-18 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 Pfam PF13302 Acetyltransferase (GNAT) domain 736 875 1.2E-7 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 149 286 1.3E-57 T 26-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 Pfam PF13549 ATP-grasp domain 483 705 3.5E-86 T 26-04-2016 RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 SUPERFAMILY SSF52210 129 287 6.67E-47 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 SUPERFAMILY SSF51735 1 137 1.11E-31 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 Gene3D G3DSA:3.40.50.261 131 285 2.2E-31 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 PANTHER PTHR11117:SF8 31 710 4.3E-248 T 26-04-2016 RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 Gene3D G3DSA:3.40.50.261 302 445 6.8E-16 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 SUPERFAMILY SSF56059 491 707 9.19E-40 T 26-04-2016 RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 SUPERFAMILY SSF52210 302 456 2.88E-34 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 Pfam PF13380 CoA binding domain 13 132 4.4E-21 T 26-04-2016 IPR003781 CoA-binding GO:0048037 RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 SUPERFAMILY SSF55729 732 880 3.6E-19 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS05425 aa47186a7c0b1f284cebe05a0a973726 893 PANTHER PTHR11117 31 710 4.3E-248 T 26-04-2016 RGE_RS05495 6c600b00cc3b1e0f36ba4651a158d552 494 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 290 326 - T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS05495 6c600b00cc3b1e0f36ba4651a158d552 494 Gene3D G3DSA:3.90.1150.10 56 124 4.7E-24 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS05495 6c600b00cc3b1e0f36ba4651a158d552 494 Gene3D G3DSA:3.90.1150.10 381 492 4.7E-24 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS05495 6c600b00cc3b1e0f36ba4651a158d552 494 SUPERFAMILY SSF53383 60 491 1.32E-87 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS05495 6c600b00cc3b1e0f36ba4651a158d552 494 Pfam PF00202 Aminotransferase class-III 85 404 3.9E-49 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS05495 6c600b00cc3b1e0f36ba4651a158d552 494 PANTHER PTHR11986 1 494 1.3E-104 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS05495 6c600b00cc3b1e0f36ba4651a158d552 494 Gene3D G3DSA:3.40.640.10 127 377 2.7E-58 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS05495 6c600b00cc3b1e0f36ba4651a158d552 494 PANTHER PTHR11986:SF5 1 494 1.3E-104 T 26-04-2016 RGE_RS10540 c0551d2a98c2e3a69f00a770af3e6998 255 Pfam PF00959 Phage lysozyme 41 166 4.8E-17 T 26-04-2016 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 RGE_RS10540 c0551d2a98c2e3a69f00a770af3e6998 255 Gene3D G3DSA:1.10.530.40 9 179 8.3E-44 T 26-04-2016 IPR023347 Lysozyme domain GO:0003796 RGE_RS10540 c0551d2a98c2e3a69f00a770af3e6998 255 SUPERFAMILY SSF53955 8 178 6.14E-39 T 26-04-2016 IPR023346 Lysozyme-like domain RGE_RS10540 c0551d2a98c2e3a69f00a770af3e6998 255 PANTHER PTHR38107:SF2 1 179 1.2E-30 T 26-04-2016 RGE_RS10540 c0551d2a98c2e3a69f00a770af3e6998 255 PANTHER PTHR38107 1 179 1.2E-30 T 26-04-2016 RGE_RS07925 e8498366c28caf20f1354ee12b63398b 323 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 250 263 - T 26-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RGE_RS07925 e8498366c28caf20f1354ee12b63398b 323 Gene3D G3DSA:3.40.1190.20 33 308 6.4E-69 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS07925 e8498366c28caf20f1354ee12b63398b 323 SUPERFAMILY SSF53613 5 295 9.35E-56 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS07925 e8498366c28caf20f1354ee12b63398b 323 PANTHER PTHR10584:SF170 6 308 4.6E-81 T 26-04-2016 RGE_RS07925 e8498366c28caf20f1354ee12b63398b 323 PANTHER PTHR10584 6 308 4.6E-81 T 26-04-2016 RGE_RS07925 e8498366c28caf20f1354ee12b63398b 323 PIRSF PIRSF000535 1 312 8.5E-81 T 26-04-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RGE_RS07925 e8498366c28caf20f1354ee12b63398b 323 Pfam PF00294 pfkB family carbohydrate kinase 9 294 3.2E-46 T 26-04-2016 IPR011611 Carbohydrate kinase PfkB RGE_RS07925 e8498366c28caf20f1354ee12b63398b 323 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 6 308 2.7E-85 T 26-04-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RGE_RS14840 c1b8b3f2a5fbd9d6ff50591b8390ffee 167 Gene3D G3DSA:1.10.1740.10 12 103 7.2E-9 T 26-04-2016 RGE_RS14840 c1b8b3f2a5fbd9d6ff50591b8390ffee 167 Pfam PF08281 Sigma-70, region 4 110 160 2.4E-16 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14840 c1b8b3f2a5fbd9d6ff50591b8390ffee 167 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 158 1.6E-19 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14840 c1b8b3f2a5fbd9d6ff50591b8390ffee 167 SUPERFAMILY SSF88659 102 162 8.07E-14 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14840 c1b8b3f2a5fbd9d6ff50591b8390ffee 167 Pfam PF04542 Sigma-70 region 2 14 79 3.6E-12 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14840 c1b8b3f2a5fbd9d6ff50591b8390ffee 167 Gene3D G3DSA:1.10.10.10 107 161 1.6E-13 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14840 c1b8b3f2a5fbd9d6ff50591b8390ffee 167 SUPERFAMILY SSF88946 12 99 5.1E-11 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14840 c1b8b3f2a5fbd9d6ff50591b8390ffee 167 PANTHER PTHR30173:SF9 10 162 1.1E-40 T 26-04-2016 RGE_RS14840 c1b8b3f2a5fbd9d6ff50591b8390ffee 167 PANTHER PTHR30173 10 162 1.1E-40 T 26-04-2016 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 416 431 1.3E-35 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 440 457 1.3E-35 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 138 157 1.3E-35 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 48 73 1.3E-35 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 120 138 1.3E-35 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 385 403 1.3E-35 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 267 286 1.3E-35 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 238 254 1.3E-35 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 361 379 1.3E-35 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 PANTHER PTHR11686:SF8 15 545 1.3E-223 T 26-04-2016 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 PANTHER PTHR11686 15 545 1.3E-223 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 Pfam PF01019 Gamma-glutamyltranspeptidase 41 540 4.2E-145 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS10605 5b7aa322defed081ffce8daacc51e1ad 545 SUPERFAMILY SSF56235 16 545 9.65E-165 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS00300 56ddd46078f6a5dea8d49224d65f1d1f 294 Pfam PF02195 ParB-like nuclease domain 34 122 4.2E-27 T 26-04-2016 IPR003115 ParB/Sulfiredoxin RGE_RS00300 56ddd46078f6a5dea8d49224d65f1d1f 294 Gene3D G3DSA:3.90.1530.10 28 128 9.7E-37 T 26-04-2016 RGE_RS00300 56ddd46078f6a5dea8d49224d65f1d1f 294 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 30 201 1.3E-55 T 26-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 RGE_RS00300 56ddd46078f6a5dea8d49224d65f1d1f 294 PANTHER PTHR33375 30 289 1.3E-84 T 26-04-2016 RGE_RS00300 56ddd46078f6a5dea8d49224d65f1d1f 294 PANTHER PTHR33375:SF1 30 289 1.3E-84 T 26-04-2016 RGE_RS00300 56ddd46078f6a5dea8d49224d65f1d1f 294 SUPERFAMILY SSF110849 33 124 3.66E-27 T 26-04-2016 IPR003115 ParB/Sulfiredoxin RGE_RS00300 56ddd46078f6a5dea8d49224d65f1d1f 294 SMART SM00470 32 122 1.5E-34 T 26-04-2016 IPR003115 ParB/Sulfiredoxin RGE_RS00300 56ddd46078f6a5dea8d49224d65f1d1f 294 SUPERFAMILY SSF109709 115 221 5.49E-33 T 26-04-2016 RGE_RS00880 66db4188358677dba21ab3a461d37e00 342 Gene3D G3DSA:2.40.160.10 21 342 7.9E-76 T 26-04-2016 IPR023614 Porin domain RGE_RS00880 66db4188358677dba21ab3a461d37e00 342 SUPERFAMILY SSF56935 21 342 4.58E-64 T 26-04-2016 RGE_RS00880 66db4188358677dba21ab3a461d37e00 342 Pfam PF13609 Gram-negative porin 7 313 1.2E-57 T 26-04-2016 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 Pfam PF14849 YidC periplasmic domain 82 360 7.9E-82 T 26-04-2016 IPR028053 Membrane insertase YidC, N-terminal RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 370 549 5.3E-68 T 26-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PRINTS PR01900 YidC translocation/secretion protein signature 504 528 6.0E-18 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PRINTS PR01900 YidC translocation/secretion protein signature 485 500 6.0E-18 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PRINTS PR01900 YidC translocation/secretion protein signature 356 372 6.0E-18 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PANTHER PTHR12428:SF14 186 550 2.3E-103 T 26-04-2016 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PRINTS PR00701 60kDa inner membrane protein signature 3 24 9.9E-70 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PRINTS PR00701 60kDa inner membrane protein signature 479 501 9.9E-70 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PRINTS PR00701 60kDa inner membrane protein signature 233 251 9.9E-70 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PRINTS PR00701 60kDa inner membrane protein signature 88 109 9.9E-70 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PRINTS PR00701 60kDa inner membrane protein signature 179 199 9.9E-70 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PRINTS PR00701 60kDa inner membrane protein signature 432 455 9.9E-70 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PRINTS PR00701 60kDa inner membrane protein signature 268 283 9.9E-70 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PRINTS PR00701 60kDa inner membrane protein signature 341 361 9.9E-70 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PRINTS PR00701 60kDa inner membrane protein signature 515 538 9.9E-70 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 5 369 3.6E-104 T 26-04-2016 IPR028053 Membrane insertase YidC, N-terminal RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 Pfam PF02096 60Kd inner membrane protein 371 549 6.2E-59 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 PANTHER PTHR12428 186 550 2.3E-103 T 26-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RGE_RS22950 2846d7c9ed77cded32fd683ee490a620 554 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 5 551 22.699 T 26-04-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 RGE_RS06025 7f051388a767fb21e3cfe26ce28cf860 299 PANTHER PTHR33525:SF3 81 221 3.6E-13 T 26-04-2016 RGE_RS06025 7f051388a767fb21e3cfe26ce28cf860 299 PANTHER PTHR33525 81 221 3.6E-13 T 26-04-2016 RGE_RS06025 7f051388a767fb21e3cfe26ce28cf860 299 Pfam PF08668 HDOD domain 83 240 1.1E-19 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS06025 7f051388a767fb21e3cfe26ce28cf860 299 SUPERFAMILY SSF109604 78 286 3.35E-22 T 26-04-2016 RGE_RS06025 7f051388a767fb21e3cfe26ce28cf860 299 Gene3D G3DSA:1.10.3150.10 83 262 1.3E-22 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 SMART SM00764 148 334 1.2E-99 T 26-04-2016 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 TIGRFAM TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase 18 336 1.4E-119 T 26-04-2016 IPR005216 Citrate lyase ligase GO:0008771 RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 SUPERFAMILY SSF55729 30 121 2.05E-13 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 112 338 4.0E-80 T 26-04-2016 RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 PANTHER PTHR40599:SF2 20 350 6.9E-140 T 26-04-2016 RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 Gene3D G3DSA:3.40.50.620 134 337 2.8E-32 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 Gene3D G3DSA:3.40.630.30 14 120 1.4E-12 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 148 202 3.9E-7 T 26-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 SUPERFAMILY SSF52374 304 337 2.94E-22 T 26-04-2016 RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 SUPERFAMILY SSF52374 147 267 2.94E-22 T 26-04-2016 RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 PIRSF PIRSF005751 2 349 5.3E-116 T 26-04-2016 IPR005216 Citrate lyase ligase GO:0008771 RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 Pfam PF00583 Acetyltransferase (GNAT) family 59 112 3.0E-4 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 Pfam PF08218 Citrate lyase ligase C-terminal domain 148 333 1.3E-68 T 26-04-2016 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 RGE_RS11270 37f828e90afe4cf86a813e669fcbb42a 351 PANTHER PTHR40599 20 350 6.9E-140 T 26-04-2016 RGE_RS04625 bc80f3227c6d2b8cc21e46de7bd2539e 401 Gene3D G3DSA:1.20.1250.20 220 397 6.6E-9 T 26-04-2016 RGE_RS04625 bc80f3227c6d2b8cc21e46de7bd2539e 401 Gene3D G3DSA:1.20.1250.20 12 199 2.3E-28 T 26-04-2016 RGE_RS04625 bc80f3227c6d2b8cc21e46de7bd2539e 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 14 389 6.9E-78 T 26-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 RGE_RS04625 bc80f3227c6d2b8cc21e46de7bd2539e 401 PANTHER PTHR23502 13 396 2.7E-99 T 26-04-2016 RGE_RS04625 bc80f3227c6d2b8cc21e46de7bd2539e 401 Pfam PF07690 Major Facilitator Superfamily 20 362 1.6E-44 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS04625 bc80f3227c6d2b8cc21e46de7bd2539e 401 PANTHER PTHR23502:SF19 13 396 2.7E-99 T 26-04-2016 RGE_RS04625 bc80f3227c6d2b8cc21e46de7bd2539e 401 SUPERFAMILY SSF103473 6 398 1.11E-62 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS10210 0b0902dd332b3ffeda269717a8efbc68 751 SUPERFAMILY SSF52540 272 543 2.97E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10210 0b0902dd332b3ffeda269717a8efbc68 751 Gene3D G3DSA:3.40.50.300 439 563 8.3E-18 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10210 0b0902dd332b3ffeda269717a8efbc68 751 Pfam PF12513 Mitochondrial degradasome RNA helicase subunit C terminal 687 733 2.3E-8 T 26-04-2016 IPR022192 Mitochondrial degradasome RNA helicase subunit, C-terminal domain GO:0016817 RGE_RS10210 0b0902dd332b3ffeda269717a8efbc68 751 PANTHER PTHR12131 266 747 3.3E-135 T 26-04-2016 RGE_RS10210 0b0902dd332b3ffeda269717a8efbc68 751 Pfam PF00271 Helicase conserved C-terminal domain 438 537 1.5E-10 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS10210 0b0902dd332b3ffeda269717a8efbc68 751 PANTHER PTHR12131:SF1 266 747 3.3E-135 T 26-04-2016 RGE_RS10210 0b0902dd332b3ffeda269717a8efbc68 751 SMART SM00490 448 537 2.3E-18 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 Gene3D G3DSA:1.10.3850.10 832 1048 6.2E-65 T 26-04-2016 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 Gene3D G3DSA:1.20.1640.10 285 493 2.7E-55 T 26-04-2016 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 SUPERFAMILY SSF82866 825 1050 6.67E-51 T 26-04-2016 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 Gene3D G3DSA:3.30.70.1430 40 135 1.4E-28 T 26-04-2016 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 Gene3D G3DSA:3.30.2090.10 739 824 5.5E-11 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 Gene3D G3DSA:3.30.2090.10 183 262 2.1E-14 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 Gene3D G3DSA:3.30.70.1430 599 690 6.5E-14 T 26-04-2016 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 SUPERFAMILY SSF82714 183 262 3.79E-14 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 SUPERFAMILY SSF82866 291 490 4.45E-46 T 26-04-2016 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 SUPERFAMILY SSF82693 137 182 2.88E-19 T 26-04-2016 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 SUPERFAMILY SSF82693 268 321 2.88E-19 T 26-04-2016 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 Pfam PF00873 AcrB/AcrD/AcrF family 4 536 9.3E-148 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 Pfam PF00873 AcrB/AcrD/AcrF family 565 1044 3.1E-107 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 SUPERFAMILY SSF82693 40 132 1.41E-25 T 26-04-2016 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 SUPERFAMILY SSF82693 598 691 3.84E-17 T 26-04-2016 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 PANTHER PTHR32063 532 1050 0.0 T 26-04-2016 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 PANTHER PTHR32063 1 496 0.0 T 26-04-2016 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 3.5E-56 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 3.5E-56 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 3.5E-56 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 3.5E-56 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 3.5E-56 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.5E-56 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.5E-56 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS07810 bda8bc755b754b4eb2e2300832cf5b31 1073 SUPERFAMILY SSF82714 739 824 2.22E-10 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS07050 a26237439fb292cbfdcbb22145bec644 264 SUPERFAMILY SSF53218 1 209 4.58E-35 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS07050 a26237439fb292cbfdcbb22145bec644 264 SMART SM00852 4 177 9.2E-30 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS07050 a26237439fb292cbfdcbb22145bec644 264 Pfam PF00994 Probable molybdopterin binding domain 5 170 9.7E-27 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS07050 a26237439fb292cbfdcbb22145bec644 264 Gene3D G3DSA:3.40.980.10 1 179 1.1E-30 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS07050 a26237439fb292cbfdcbb22145bec644 264 PANTHER PTHR13939 1 262 1.5E-30 T 26-04-2016 RGE_RS01395 4f66cb3eb441b3b60eace72a9efc31c8 388 SUPERFAMILY SSF50685 52 385 1.36E-111 T 26-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RGE_RS01395 4f66cb3eb441b3b60eace72a9efc31c8 388 SMART SM00925 143 284 1.9E-67 T 26-04-2016 IPR005300 Lytic transglycosylase MltA GO:0004553 RGE_RS01395 4f66cb3eb441b3b60eace72a9efc31c8 388 Pfam PF06725 3D domain 307 380 1.2E-22 T 26-04-2016 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 RGE_RS01395 4f66cb3eb441b3b60eace72a9efc31c8 388 Gene3D G3DSA:2.40.40.10 59 164 5.8E-22 T 26-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RGE_RS01395 4f66cb3eb441b3b60eace72a9efc31c8 388 Gene3D G3DSA:2.40.40.10 191 385 2.0E-56 T 26-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RGE_RS01395 4f66cb3eb441b3b60eace72a9efc31c8 388 PANTHER PTHR30124 94 388 2.0E-96 T 26-04-2016 RGE_RS01395 4f66cb3eb441b3b60eace72a9efc31c8 388 PANTHER PTHR30124:SF0 94 388 2.0E-96 T 26-04-2016 RGE_RS01395 4f66cb3eb441b3b60eace72a9efc31c8 388 Pfam PF03562 MltA specific insert domain 71 284 3.2E-58 T 26-04-2016 IPR005300 Lytic transglycosylase MltA GO:0004553 RGE_RS01395 4f66cb3eb441b3b60eace72a9efc31c8 388 PIRSF PIRSF019422 4 388 1.9E-99 T 26-04-2016 IPR026044 Membrane-bound lytic murein transglycosylase A RGE_RS03735 3c714d2c188dbbd52cdea4113f1f77b7 359 Pfam PF03702 Uncharacterised protein family (UPF0075) 1 359 1.1E-125 T 26-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 RGE_RS03735 3c714d2c188dbbd52cdea4113f1f77b7 359 Gene3D G3DSA:3.30.420.40 138 319 3.1E-67 T 26-04-2016 RGE_RS03735 3c714d2c188dbbd52cdea4113f1f77b7 359 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 1 359 37.711 T 26-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 RGE_RS03735 3c714d2c188dbbd52cdea4113f1f77b7 359 PANTHER PTHR30605 1 358 9.6E-129 T 26-04-2016 RGE_RS03735 3c714d2c188dbbd52cdea4113f1f77b7 359 SUPERFAMILY SSF53067 57 102 6.34E-18 T 26-04-2016 RGE_RS03735 3c714d2c188dbbd52cdea4113f1f77b7 359 SUPERFAMILY SSF53067 136 332 6.34E-18 T 26-04-2016 RGE_RS03735 3c714d2c188dbbd52cdea4113f1f77b7 359 SUPERFAMILY SSF53067 11 30 6.34E-18 T 26-04-2016 RGE_RS07540 fc6048ea12fbda8cda00e13764ef1012 214 Gene3D G3DSA:1.10.1670.10 123 208 2.7E-35 T 26-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RGE_RS07540 fc6048ea12fbda8cda00e13764ef1012 214 Pfam PF00633 Helix-hairpin-helix motif 100 127 5.7E-9 T 26-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 RGE_RS07540 fc6048ea12fbda8cda00e13764ef1012 214 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 26-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 RGE_RS07540 fc6048ea12fbda8cda00e13764ef1012 214 SUPERFAMILY SSF48150 2 208 1.16E-71 T 26-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RGE_RS07540 fc6048ea12fbda8cda00e13764ef1012 214 Gene3D G3DSA:1.10.340.30 23 122 1.5E-35 T 26-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RGE_RS07540 fc6048ea12fbda8cda00e13764ef1012 214 SMART SM00478 38 185 3.3E-61 T 26-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RGE_RS07540 fc6048ea12fbda8cda00e13764ef1012 214 PIRSF PIRSF001435 7 210 5.0E-52 T 26-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RGE_RS07540 fc6048ea12fbda8cda00e13764ef1012 214 PANTHER PTHR10359:SF18 11 210 4.9E-84 T 26-04-2016 RGE_RS07540 fc6048ea12fbda8cda00e13764ef1012 214 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 167 9.2E-22 T 26-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RGE_RS07540 fc6048ea12fbda8cda00e13764ef1012 214 Hamap MF_00942 Endonuclease III [nth]. 1 209 36.664 T 26-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RGE_RS07540 fc6048ea12fbda8cda00e13764ef1012 214 PANTHER PTHR10359 11 210 4.9E-84 T 26-04-2016 RGE_RS07540 fc6048ea12fbda8cda00e13764ef1012 214 TIGRFAM TIGR01083 nth: endonuclease III 9 194 1.7E-80 T 26-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RGE_RS18885 48c98bb3a4a96df05047d135a6b9eacf 298 Gene3D G3DSA:1.10.3150.10 33 293 1.9E-47 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS18885 48c98bb3a4a96df05047d135a6b9eacf 298 PANTHER PTHR33525:SF3 37 298 5.8E-24 T 26-04-2016 RGE_RS18885 48c98bb3a4a96df05047d135a6b9eacf 298 SUPERFAMILY SSF109604 31 291 1.07E-44 T 26-04-2016 RGE_RS18885 48c98bb3a4a96df05047d135a6b9eacf 298 Pfam PF08668 HDOD domain 37 227 2.7E-37 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS18885 48c98bb3a4a96df05047d135a6b9eacf 298 PANTHER PTHR33525 37 298 5.8E-24 T 26-04-2016 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 PANTHER PTHR32063 3 1028 0.0 T 26-04-2016 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 SUPERFAMILY SSF82866 796 1024 5.36E-44 T 26-04-2016 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1023 3.5E-224 T 26-04-2016 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 SUPERFAMILY SSF82866 295 502 9.94E-39 T 26-04-2016 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 1.9E-32 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 PRINTS PR00702 Acriflavin resistance protein family signature 475 498 1.9E-32 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 1.9E-32 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.9E-32 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 1.9E-32 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 1.9E-32 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 PRINTS PR00702 Acriflavin resistance protein family signature 550 567 1.9E-32 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 Gene3D G3DSA:3.30.2090.10 715 801 8.3E-12 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 Pfam PF00873 AcrB/AcrD/AcrF family 6 1019 4.8E-243 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 SUPERFAMILY SSF82714 715 798 1.05E-11 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 Gene3D G3DSA:3.30.2090.10 188 268 6.3E-12 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 SUPERFAMILY SSF82693 150 187 1.78E-15 T 26-04-2016 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 SUPERFAMILY SSF82693 273 321 1.78E-15 T 26-04-2016 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 Gene3D G3DSA:3.30.70.1430 44 141 1.8E-25 T 26-04-2016 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 Gene3D G3DSA:1.10.3850.10 280 502 4.4E-49 T 26-04-2016 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 Gene3D G3DSA:1.10.3850.10 805 1023 9.8E-48 T 26-04-2016 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 SUPERFAMILY SSF82693 43 128 6.28E-21 T 26-04-2016 RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 SUPERFAMILY SSF82714 188 269 4.58E-14 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS14425 5547d858dfa70193114806c5bf38312c 1047 PANTHER PTHR32063:SF4 3 1028 0.0 T 26-04-2016 RGE_RS10585 11e52634431dbe1398f4e0917a09f5dd 589 PANTHER PTHR30258 62 586 1.5E-242 T 26-04-2016 RGE_RS10585 11e52634431dbe1398f4e0917a09f5dd 589 Pfam PF00437 Type II/IV secretion system protein 214 476 2.4E-70 T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS10585 11e52634431dbe1398f4e0917a09f5dd 589 SUPERFAMILY SSF52540 198 583 2.25E-93 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10585 11e52634431dbe1398f4e0917a09f5dd 589 Gene3D G3DSA:3.30.450.90 195 309 7.1E-41 T 26-04-2016 RGE_RS10585 11e52634431dbe1398f4e0917a09f5dd 589 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 404 418 - T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS10585 11e52634431dbe1398f4e0917a09f5dd 589 PANTHER PTHR30258:SF13 62 586 1.5E-242 T 26-04-2016 RGE_RS10585 11e52634431dbe1398f4e0917a09f5dd 589 SUPERFAMILY SSF160246 14 161 2.38E-16 T 26-04-2016 RGE_RS10585 11e52634431dbe1398f4e0917a09f5dd 589 Gene3D G3DSA:3.40.50.300 315 586 2.0E-89 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10585 11e52634431dbe1398f4e0917a09f5dd 589 SMART SM00382 337 460 5.8E-6 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS10585 11e52634431dbe1398f4e0917a09f5dd 589 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 64 165 1.0E-13 T 26-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 RGE_RS01855 c078d6b1903e99dd7e15d5fd1293ee10 677 SUPERFAMILY SSF51735 464 566 9.2E-11 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS01855 c078d6b1903e99dd7e15d5fd1293ee10 677 Gene3D G3DSA:3.40.50.720 464 572 3.8E-11 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15675 ad26075138dcd332b110ebdf5c6ce98a 228 Gene3D G3DSA:3.30.1330.60 121 225 2.2E-36 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS15675 ad26075138dcd332b110ebdf5c6ce98a 228 Pfam PF00691 OmpA family 126 220 4.5E-24 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS15675 ad26075138dcd332b110ebdf5c6ce98a 228 PANTHER PTHR30128 82 224 3.9E-33 T 26-04-2016 RGE_RS15675 ad26075138dcd332b110ebdf5c6ce98a 228 SUPERFAMILY SSF103088 122 225 1.44E-33 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS15675 ad26075138dcd332b110ebdf5c6ce98a 228 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 209 228 2.4E-5 T 26-04-2016 RGE_RS15675 ad26075138dcd332b110ebdf5c6ce98a 228 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 189 208 2.4E-5 T 26-04-2016 RGE_RS15675 ad26075138dcd332b110ebdf5c6ce98a 228 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 171 188 2.4E-5 T 26-04-2016 RGE_RS15675 ad26075138dcd332b110ebdf5c6ce98a 228 PRINTS PR01021 OMPA domain signature 156 171 6.0E-11 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS15675 ad26075138dcd332b110ebdf5c6ce98a 228 PRINTS PR01021 OMPA domain signature 126 148 6.0E-11 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS15675 ad26075138dcd332b110ebdf5c6ce98a 228 PRINTS PR01021 OMPA domain signature 171 187 6.0E-11 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS02530 b32735d41547b4cfd0158ad31b9d7182 281 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 281 37.312 T 26-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS02530 b32735d41547b4cfd0158ad31b9d7182 281 Gene3D G3DSA:3.10.310.10 121 269 2.8E-47 T 26-04-2016 RGE_RS02530 b32735d41547b4cfd0158ad31b9d7182 281 Gene3D G3DSA:3.10.310.10 1 120 3.9E-51 T 26-04-2016 RGE_RS02530 b32735d41547b4cfd0158ad31b9d7182 281 SUPERFAMILY SSF54506 150 280 3.28E-48 T 26-04-2016 RGE_RS02530 b32735d41547b4cfd0158ad31b9d7182 281 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 279 1.0E-82 T 26-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS02530 b32735d41547b4cfd0158ad31b9d7182 281 PANTHER PTHR31689 1 281 1.3E-114 T 26-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS02530 b32735d41547b4cfd0158ad31b9d7182 281 SUPERFAMILY SSF54506 3 132 3.49E-44 T 26-04-2016 RGE_RS02530 b32735d41547b4cfd0158ad31b9d7182 281 Pfam PF01678 Diaminopimelate epimerase 160 273 7.1E-30 T 26-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS02530 b32735d41547b4cfd0158ad31b9d7182 281 Pfam PF01678 Diaminopimelate epimerase 5 124 2.7E-26 T 26-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 253 2.0E-68 T 26-04-2016 RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 2.5E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 2.5E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 2.5E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 194 7.2E-5 T 26-04-2016 RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 SUPERFAMILY SSF51735 12 254 3.71E-83 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 Gene3D G3DSA:3.40.50.720 4 255 4.7E-89 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.5E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 1.5E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 1.5E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 1.5E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 1.5E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 1.5E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 PANTHER PTHR24322 163 195 3.3E-54 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 PANTHER PTHR24322 17 147 3.3E-54 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS23415 9c9767badb324bce41151e5c8e6b0454 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS01470 88c5a26173dbe29aa17e94f285af8e1a 145 SUPERFAMILY SSF54909 64 143 6.57E-17 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS01470 88c5a26173dbe29aa17e94f285af8e1a 145 Gene3D G3DSA:3.30.70.920 67 137 6.0E-19 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS01470 88c5a26173dbe29aa17e94f285af8e1a 145 SMART SM00344 4 109 2.2E-25 T 26-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RGE_RS01470 88c5a26173dbe29aa17e94f285af8e1a 145 SUPERFAMILY SSF46785 4 57 1.16E-12 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01470 88c5a26173dbe29aa17e94f285af8e1a 145 Gene3D G3DSA:1.10.10.10 3 55 8.3E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01470 88c5a26173dbe29aa17e94f285af8e1a 145 Pfam PF13404 AsnC-type helix-turn-helix domain 4 44 1.9E-13 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS01470 88c5a26173dbe29aa17e94f285af8e1a 145 PANTHER PTHR30154 4 138 1.0E-36 T 26-04-2016 RGE_RS01470 88c5a26173dbe29aa17e94f285af8e1a 145 Pfam PF01037 Lrp/AsnC ligand binding domain 69 137 1.6E-16 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS01470 88c5a26173dbe29aa17e94f285af8e1a 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 2.5E-13 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS01470 88c5a26173dbe29aa17e94f285af8e1a 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 2.5E-13 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS01470 88c5a26173dbe29aa17e94f285af8e1a 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 2.5E-13 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS18980 9e34c3fe0e03dd02a3a81a7113a1028e 528 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 79 102 - T 26-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RGE_RS18980 9e34c3fe0e03dd02a3a81a7113a1028e 528 SUPERFAMILY SSF51905 2 285 7.93E-84 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18980 9e34c3fe0e03dd02a3a81a7113a1028e 528 SUPERFAMILY SSF51905 466 524 7.93E-84 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18980 9e34c3fe0e03dd02a3a81a7113a1028e 528 Gene3D G3DSA:3.50.50.60 2 123 5.4E-117 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18980 9e34c3fe0e03dd02a3a81a7113a1028e 528 Gene3D G3DSA:3.50.50.60 184 310 5.4E-117 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18980 9e34c3fe0e03dd02a3a81a7113a1028e 528 Gene3D G3DSA:3.50.50.60 460 523 5.4E-117 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18980 9e34c3fe0e03dd02a3a81a7113a1028e 528 SUPERFAMILY SSF54373 287 467 9.03E-48 T 26-04-2016 RGE_RS18980 9e34c3fe0e03dd02a3a81a7113a1028e 528 Pfam PF00732 GMC oxidoreductase 2 292 2.9E-92 T 26-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RGE_RS18980 9e34c3fe0e03dd02a3a81a7113a1028e 528 PIRSF PIRSF000137 1 528 1.1E-150 T 26-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 RGE_RS18980 9e34c3fe0e03dd02a3a81a7113a1028e 528 Pfam PF05199 GMC oxidoreductase 385 517 6.7E-40 T 26-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 RGE_RS18980 9e34c3fe0e03dd02a3a81a7113a1028e 528 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 251 265 - T 26-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RGE_RS18980 9e34c3fe0e03dd02a3a81a7113a1028e 528 PANTHER PTHR11552 2 528 5.1E-201 T 26-04-2016 RGE_RS04250 18afc4463f73f02e13cc73305008e9f7 92 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS04250 18afc4463f73f02e13cc73305008e9f7 92 Gene3D G3DSA:3.30.70.20 4 77 8.4E-19 T 26-04-2016 RGE_RS04250 18afc4463f73f02e13cc73305008e9f7 92 PANTHER PTHR24960:SF38 1 81 7.5E-28 T 26-04-2016 RGE_RS04250 18afc4463f73f02e13cc73305008e9f7 92 Pfam PF12838 4Fe-4S dicluster domain 9 57 2.1E-6 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS04250 18afc4463f73f02e13cc73305008e9f7 92 SUPERFAMILY SSF54862 1 81 1.6E-19 T 26-04-2016 RGE_RS04250 18afc4463f73f02e13cc73305008e9f7 92 PANTHER PTHR24960 1 81 7.5E-28 T 26-04-2016 RGE_RS11080 c9651534902395ff708a07642241f4b8 429 Gene3D G3DSA:1.10.630.10 14 404 4.4E-47 T 26-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RGE_RS11080 c9651534902395ff708a07642241f4b8 429 PANTHER PTHR24286 14 395 6.4E-28 T 26-04-2016 RGE_RS11080 c9651534902395ff708a07642241f4b8 429 PRINTS PR00463 E-class P450 group I signature 377 400 4.9E-10 T 26-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RGE_RS11080 c9651534902395ff708a07642241f4b8 429 PRINTS PR00463 E-class P450 group I signature 331 355 4.9E-10 T 26-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RGE_RS11080 c9651534902395ff708a07642241f4b8 429 PRINTS PR00463 E-class P450 group I signature 42 61 4.9E-10 T 26-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RGE_RS11080 c9651534902395ff708a07642241f4b8 429 PRINTS PR00463 E-class P450 group I signature 291 309 4.9E-10 T 26-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RGE_RS11080 c9651534902395ff708a07642241f4b8 429 SUPERFAMILY SSF48264 18 424 6.55E-58 T 26-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RGE_RS11080 c9651534902395ff708a07642241f4b8 429 Pfam PF00067 Cytochrome P450 291 396 1.1E-15 T 26-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RGE_RS01550 c31a86d612fafc983feb1dfb6f374774 143 PANTHER PTHR11661 1 142 1.5E-70 T 26-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RGE_RS01550 c31a86d612fafc983feb1dfb6f374774 143 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 7.5E-23 T 26-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RGE_RS01550 c31a86d612fafc983feb1dfb6f374774 143 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 1.8E-64 T 26-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 RGE_RS01550 c31a86d612fafc983feb1dfb6f374774 143 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 31.023 T 26-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RGE_RS01550 c31a86d612fafc983feb1dfb6f374774 143 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 6.5E-29 T 26-04-2016 IPR020784 Ribosomal protein L11, N-terminal RGE_RS01550 c31a86d612fafc983feb1dfb6f374774 143 Gene3D G3DSA:1.10.10.250 73 141 4.3E-30 T 26-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RGE_RS01550 c31a86d612fafc983feb1dfb6f374774 143 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 26-04-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 RGE_RS01550 c31a86d612fafc983feb1dfb6f374774 143 SMART SM00649 9 141 2.5E-83 T 26-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RGE_RS01550 c31a86d612fafc983feb1dfb6f374774 143 SUPERFAMILY SSF54747 3 72 5.36E-30 T 26-04-2016 IPR020784 Ribosomal protein L11, N-terminal RGE_RS01550 c31a86d612fafc983feb1dfb6f374774 143 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 7.0E-14 T 26-04-2016 RGE_RS01550 c31a86d612fafc983feb1dfb6f374774 143 Gene3D G3DSA:3.30.1550.10 2 72 8.0E-37 T 26-04-2016 IPR020784 Ribosomal protein L11, N-terminal RGE_RS01550 c31a86d612fafc983feb1dfb6f374774 143 SUPERFAMILY SSF46906 68 141 1.3E-25 T 26-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 SUPERFAMILY SSF51569 4 292 7.54E-103 T 26-04-2016 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 3 289 66.336 T 26-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 Gene3D G3DSA:3.20.20.70 2 293 1.9E-118 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 SMART SM01130 3 291 1.2E-140 T 26-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 PIRSF PIRSF001365 1 293 4.7E-91 T 26-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 PANTHER PTHR12128:SF34 4 293 1.6E-132 T 26-04-2016 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 6 288 5.1E-108 T 26-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 Pfam PF00701 Dihydrodipicolinate synthetase family 5 289 2.4E-96 T 26-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 PANTHER PTHR12128 4 293 1.6E-132 T 26-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 135 165 - T 26-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 6.0E-32 T 26-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 130 147 6.0E-32 T 26-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 6.0E-32 T 26-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RGE_RS16965 e8bf01138b35365a3a6e425de5bb84e9 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 105 121 6.0E-32 T 26-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RGE_RS15665 8cf7dec5f3ae61880b381adb36fd30cc 1192 SUPERFAMILY SSF52540 115 260 1.38E-8 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15665 8cf7dec5f3ae61880b381adb36fd30cc 1192 Pfam PF06761 Intracellular multiplication and human macrophage-killing 483 795 9.3E-64 T 26-04-2016 IPR009612 ImcF-related RGE_RS15665 8cf7dec5f3ae61880b381adb36fd30cc 1192 Pfam PF14331 ImcF-related N-terminal domain 177 436 5.2E-75 T 26-04-2016 IPR025743 ImcF-related, N-terminal domain RGE_RS15665 8cf7dec5f3ae61880b381adb36fd30cc 1192 Pfam PF06744 Type VI secretion protein IcmF C-terminal 923 1119 5.6E-44 T 26-04-2016 IPR010623 Type VI secretion system IcmF, C-terminal RGE_RS15665 8cf7dec5f3ae61880b381adb36fd30cc 1192 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 17 1159 4.9E-186 T 26-04-2016 IPR017731 Type VI secretion system, IcmF RGE_RS15665 8cf7dec5f3ae61880b381adb36fd30cc 1192 PANTHER PTHR36153 37 1177 1.6E-113 T 26-04-2016 RGE_RS15665 8cf7dec5f3ae61880b381adb36fd30cc 1192 Gene3D G3DSA:3.40.50.300 120 253 2.9E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 SUPERFAMILY SSF52540 33 263 3.05E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 SUPERFAMILY SSF46785 269 343 8.98E-26 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 Gene3D G3DSA:3.40.50.300 33 189 2.9E-33 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 37 339 9.9E-147 T 26-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 SMART SM00382 64 191 3.4E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 Gene3D G3DSA:1.10.8.60 196 268 4.5E-34 T 26-04-2016 RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 PANTHER PTHR13779 25 345 1.1E-184 T 26-04-2016 RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 PANTHER PTHR13779:SF25 25 345 1.1E-184 T 26-04-2016 RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 263 341 3.0E-35 T 26-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 Gene3D G3DSA:1.10.10.10 270 340 2.6E-34 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 354 182.08 T 26-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 22 248 4.3E-117 T 26-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RGE_RS21600 df098e0891e8c956d14080317c6b6b0b 354 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 266 339 3.2E-33 T 26-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RGE_RS15085 4f631972045eb20eccfc977a6a5c26ba 150 Gene3D G3DSA:3.30.530.20 1 148 8.5E-46 T 26-04-2016 IPR023393 START-like domain RGE_RS15085 4f631972045eb20eccfc977a6a5c26ba 150 PANTHER PTHR12901:SF7 1 148 7.8E-45 T 26-04-2016 RGE_RS15085 4f631972045eb20eccfc977a6a5c26ba 150 SUPERFAMILY SSF55961 1 149 1.36E-33 T 26-04-2016 RGE_RS15085 4f631972045eb20eccfc977a6a5c26ba 150 PANTHER PTHR12901 1 148 7.8E-45 T 26-04-2016 RGE_RS15085 4f631972045eb20eccfc977a6a5c26ba 150 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 12 139 3.1E-27 T 26-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain RGE_RS02180 2dcd48dcf16659b02773a5c3fcc31c69 673 Pfam PF01757 Acyltransferase family 27 349 4.1E-22 T 26-04-2016 IPR002656 Acyltransferase 3 GO:0016747 RGE_RS02180 2dcd48dcf16659b02773a5c3fcc31c69 673 Gene3D G3DSA:3.40.50.1110 535 660 1.1E-4 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS02180 2dcd48dcf16659b02773a5c3fcc31c69 673 PANTHER PTHR23028:SF53 1 390 1.6E-66 T 26-04-2016 RGE_RS02180 2dcd48dcf16659b02773a5c3fcc31c69 673 SUPERFAMILY SSF52266 532 660 2.56E-6 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS02180 2dcd48dcf16659b02773a5c3fcc31c69 673 PANTHER PTHR23028 1 390 1.6E-66 T 26-04-2016 RGE_RS05275 4359cca88074c48c15fb96206a67f1e1 412 Pfam PF13692 Glycosyl transferases group 1 244 376 1.5E-19 T 26-04-2016 RGE_RS05275 4359cca88074c48c15fb96206a67f1e1 412 SUPERFAMILY SSF53756 22 104 6.28E-27 T 26-04-2016 RGE_RS05275 4359cca88074c48c15fb96206a67f1e1 412 SUPERFAMILY SSF53756 135 394 6.28E-27 T 26-04-2016 RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 PANTHER PTHR11751:SF364 200 223 1.9E-26 T 26-04-2016 RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 PANTHER PTHR11751:SF364 6 75 1.9E-26 T 26-04-2016 RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 SMART SM00345 14 73 1.5E-17 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 Gene3D G3DSA:1.10.10.10 4 76 1.4E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 72 1.4E-20 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 Gene3D G3DSA:3.40.1410.10 92 227 2.0E-45 T 26-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 PANTHER PTHR11751 200 223 1.9E-26 T 26-04-2016 RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 PANTHER PTHR11751 6 75 1.9E-26 T 26-04-2016 RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 SMART SM00866 94 231 4.8E-35 T 26-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 Pfam PF07702 UTRA domain 94 231 1.6E-34 T 26-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 11 236 1.5E-80 T 26-04-2016 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 UniPathway: UPA00379 RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 SUPERFAMILY SSF64288 61 233 1.43E-41 T 26-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 SUPERFAMILY SSF46785 1 77 2.7E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 2.8E-10 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS18615 9585ff2acc7a2fcdb1260ad3f1fc6e0c 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 2.8E-10 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 177 189 2.4E-10 T 26-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 138 148 2.4E-10 T 26-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 149 160 2.4E-10 T 26-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 Hamap MF_00015 LexA repressor [lexA]. 6 228 30.848 T 26-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 PANTHER PTHR33516 95 231 1.2E-80 T 26-04-2016 RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 PANTHER PTHR33516 3 79 1.2E-80 T 26-04-2016 RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 SUPERFAMILY SSF51306 102 227 5.23E-33 T 26-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 Gene3D G3DSA:2.10.109.10 103 228 5.3E-41 T 26-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 Pfam PF00717 Peptidase S24-like 141 207 2.0E-14 T 26-04-2016 IPR019759 Peptidase S24/S26A/S26B RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 PANTHER PTHR33516:SF2 95 231 1.2E-80 T 26-04-2016 RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 PANTHER PTHR33516:SF2 3 79 1.2E-80 T 26-04-2016 RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 TIGRFAM TIGR00498 lexA: repressor LexA 6 228 2.9E-65 T 26-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 SUPERFAMILY SSF46785 6 72 8.65E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 Pfam PF01726 LexA DNA binding domain 6 68 6.2E-25 T 26-04-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 RGE_RS11680 51f0f552354759e17a6d50d4705c7c8e 231 Gene3D G3DSA:1.10.10.10 6 71 6.1E-26 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS21995 c89371fa6a4fa3d49cad90582a706bc4 123 PANTHER PTHR26402:SF50 2 120 3.7E-41 T 26-04-2016 RGE_RS21995 c89371fa6a4fa3d49cad90582a706bc4 123 SUPERFAMILY SSF52172 1 121 3.84E-38 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS21995 c89371fa6a4fa3d49cad90582a706bc4 123 PANTHER PTHR26402 2 120 3.7E-41 T 26-04-2016 RGE_RS21995 c89371fa6a4fa3d49cad90582a706bc4 123 Pfam PF00072 Response regulator receiver domain 4 116 2.8E-26 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS21995 c89371fa6a4fa3d49cad90582a706bc4 123 Gene3D G3DSA:3.40.50.2300 1 122 1.6E-39 T 26-04-2016 RGE_RS21995 c89371fa6a4fa3d49cad90582a706bc4 123 SMART SM00448 2 116 6.7E-40 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 PANTHER PTHR11695 128 369 1.1E-211 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 154 4.9E-26 T 26-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 1.5E-218 T 26-04-2016 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00040+1.1.1.-|KEGG: 00051+1.1.1.-|KEGG: 00071+1.1.1.1|KEGG: 00140+1.1.1.-|KEGG: 00240+1.1.1.-|KEGG: 00253+1.1.1.-|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00362+1.1.1.-|KEGG: 00363+1.1.1.-|KEGG: 00365+1.1.1.-|KEGG: 00400+1.1.1.-|KEGG: 00520+1.1.1.-|KEGG: 00523+1.1.1.-|KEGG: 00591+1.1.1.-|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00622+1.1.1.-|KEGG: 00625+1.1.1.1+1.1.1.-|KEGG: 00626+1.1.1.1|KEGG: 00633+1.1.1.-|KEGG: 00640+1.1.1.-|KEGG: 00650+1.1.1.-|KEGG: 00680+1.1.1.284+1.1.1.-|KEGG: 00720+1.1.1.-|KEGG: 00750+1.1.1.-|KEGG: 00830+1.1.1.1+1.1.1.-|KEGG: 00950+1.1.1.-|KEGG: 00966+1.1.1.-|KEGG: 00980+1.1.1.1|KEGG: 00981+1.1.1.-|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 26-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 PANTHER PTHR11695 15 108 1.1E-211 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 SUPERFAMILY SSF50129 1 184 4.41E-71 T 26-04-2016 IPR011032 GroES-like RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 SUPERFAMILY SSF50129 318 369 5.18E-11 T 26-04-2016 IPR011032 GroES-like RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 Gene3D G3DSA:3.40.50.720 190 310 9.1E-42 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 SUPERFAMILY SSF51735 161 334 1.42E-46 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 PANTHER PTHR11695:SF560 15 108 1.1E-211 T 26-04-2016 RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 Gene3D G3DSA:3.90.180.10 2 189 3.3E-68 T 26-04-2016 IPR011032 GroES-like RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 Pfam PF00107 Zinc-binding dehydrogenase 197 330 1.1E-23 T 26-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 SMART SM00829 12 367 1.4E-4 T 26-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RGE_RS05580 d0e9a1acda582a9a4c22645dd5eaf1dd 369 PANTHER PTHR11695:SF560 128 369 1.1E-211 T 26-04-2016 RGE_RS04015 0c6b8e1f1c78c9cb727c77cc1a9f26c6 228 PANTHER PTHR39555 14 219 2.0E-44 T 26-04-2016 RGE_RS04015 0c6b8e1f1c78c9cb727c77cc1a9f26c6 228 PIRSF PIRSF016482 14 224 7.9E-52 T 26-04-2016 IPR007445 Pilus assembly protein, PilO RGE_RS04015 0c6b8e1f1c78c9cb727c77cc1a9f26c6 228 PANTHER PTHR39555:SF1 14 219 2.0E-44 T 26-04-2016 RGE_RS04015 0c6b8e1f1c78c9cb727c77cc1a9f26c6 228 Pfam PF04350 Pilus assembly protein, PilO 63 207 5.7E-50 T 26-04-2016 IPR007445 Pilus assembly protein, PilO RGE_RS04015 0c6b8e1f1c78c9cb727c77cc1a9f26c6 228 Gene3D G3DSA:3.30.70.60 108 215 7.9E-38 T 26-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RGE_RS08080 8e3f77124107198cbf9c01d00744955d 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 4.7E-9 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS08080 8e3f77124107198cbf9c01d00744955d 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 4.7E-9 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS08080 8e3f77124107198cbf9c01d00744955d 215 Gene3D G3DSA:1.10.10.60 1 55 6.3E-23 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS08080 8e3f77124107198cbf9c01d00744955d 215 PANTHER PTHR30055:SF76 1 198 2.0E-51 T 26-04-2016 RGE_RS08080 8e3f77124107198cbf9c01d00744955d 215 Gene3D G3DSA:1.10.357.10 56 201 1.0E-27 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS08080 8e3f77124107198cbf9c01d00744955d 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 3.6E-16 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS08080 8e3f77124107198cbf9c01d00744955d 215 SUPERFAMILY SSF46689 1 84 9.71E-22 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS08080 8e3f77124107198cbf9c01d00744955d 215 PANTHER PTHR30055 1 198 2.0E-51 T 26-04-2016 RGE_RS20585 5fe2c0d474b6b1fd3231b5d0d22d4c19 164 Pfam PF08534 Redoxin 43 154 2.3E-15 T 26-04-2016 IPR013740 Redoxin GO:0016491 RGE_RS20585 5fe2c0d474b6b1fd3231b5d0d22d4c19 164 PANTHER PTHR10681:SF104 44 115 3.7E-16 T 26-04-2016 RGE_RS20585 5fe2c0d474b6b1fd3231b5d0d22d4c19 164 Gene3D G3DSA:3.40.30.10 5 163 1.4E-29 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20585 5fe2c0d474b6b1fd3231b5d0d22d4c19 164 SUPERFAMILY SSF52833 3 163 3.43E-27 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20585 5fe2c0d474b6b1fd3231b5d0d22d4c19 164 ProSitePatterns PS00194 Thioredoxin family active site. 59 77 - T 26-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RGE_RS20585 5fe2c0d474b6b1fd3231b5d0d22d4c19 164 PANTHER PTHR10681 44 115 3.7E-16 T 26-04-2016 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 Gene3D G3DSA:3.20.20.70 7 333 4.8E-148 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 SUPERFAMILY SSF51569 5 333 8.64E-143 T 26-04-2016 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 PANTHER PTHR11458 7 333 2.2E-179 T 26-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 196 215 6.5E-58 T 26-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 127 141 6.5E-58 T 26-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 275 290 6.5E-58 T 26-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 250 266 6.5E-58 T 26-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 158 177 6.5E-58 T 26-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 305 324 6.5E-58 T 26-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 Pfam PF00490 Delta-aminolevulinic acid dehydratase 10 329 6.8E-138 T 26-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 SMART SM01004 7 331 4.1E-238 T 26-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 PIRSF PIRSF001415 2 334 3.1E-146 T 26-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS21555 0f684bfa049ee8a049dea753ed7f8d93 334 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 250 262 - T 26-04-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 190 2.6E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 206 218 2.6E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 206 2.6E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 Pfam PF00072 Response regulator receiver domain 3 115 9.9E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 Gene3D G3DSA:3.40.50.2300 1 127 2.0E-29 T 26-04-2016 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 SUPERFAMILY SSF52172 1 130 2.85E-27 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 SMART SM00421 173 230 4.8E-18 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 SMART SM00448 1 115 7.2E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 Gene3D G3DSA:1.10.10.10 164 232 2.9E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 PANTHER PTHR26402 156 228 2.3E-47 T 26-04-2016 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 PANTHER PTHR26402 1 133 2.3E-47 T 26-04-2016 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 SUPERFAMILY SSF46894 161 231 1.05E-16 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 Pfam PF00196 Bacterial regulatory proteins, luxR family 176 228 3.7E-13 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 PANTHER PTHR26402:SF151 156 228 2.3E-47 T 26-04-2016 RGE_RS17985 3da454e02b2284e9c82cb6958633abd1 245 PANTHER PTHR26402:SF151 1 133 2.3E-47 T 26-04-2016 RGE_RS11590 1a8f427f8c7b2b840135bf1eb13ae63a 72 Pfam PF10981 Protein of unknown function (DUF2788) 17 66 2.5E-20 T 26-04-2016 IPR021249 Protein of unknown function DUF2788 RGE_RS01875 056f0a88b3a69c33a542e6c2e1ed1cff 680 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 132 664 3.3E-170 T 26-04-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 RGE_RS01875 056f0a88b3a69c33a542e6c2e1ed1cff 680 Pfam PF03477 ATP cone domain 18 102 9.2E-19 T 26-04-2016 IPR005144 ATP-cone domain RGE_RS01875 056f0a88b3a69c33a542e6c2e1ed1cff 680 Gene3D G3DSA:3.20.70.20 137 665 3.5E-196 T 26-04-2016 RGE_RS01875 056f0a88b3a69c33a542e6c2e1ed1cff 680 PANTHER PTHR21075 9 664 3.4E-226 T 26-04-2016 RGE_RS01875 056f0a88b3a69c33a542e6c2e1ed1cff 680 SUPERFAMILY SSF51998 132 665 9.46E-155 T 26-04-2016 RGE_RS01875 056f0a88b3a69c33a542e6c2e1ed1cff 680 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 131 665 6.4E-138 T 26-04-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 RGE_RS20045 bd9ce419c0e86ea0a7bc198cd84a987c 332 PANTHER PTHR38782:SF1 6 332 1.7E-40 T 26-04-2016 RGE_RS20045 bd9ce419c0e86ea0a7bc198cd84a987c 332 Pfam PF17188 MucB/RseB C-terminal domain 232 328 3.8E-21 T 26-04-2016 IPR033436 MucB/RseB, C-terminal RGE_RS20045 bd9ce419c0e86ea0a7bc198cd84a987c 332 PIRSF PIRSF005427 2 332 3.5E-73 T 26-04-2016 IPR005588 MucB/RseB RGE_RS20045 bd9ce419c0e86ea0a7bc198cd84a987c 332 Pfam PF03888 MucB/RseB N-terminal domain 36 209 5.8E-50 T 26-04-2016 IPR033434 MucB/RseB, N-terminal RGE_RS20045 bd9ce419c0e86ea0a7bc198cd84a987c 332 Gene3D G3DSA:2.50.20.10 131 198 3.3E-6 T 26-04-2016 RGE_RS20045 bd9ce419c0e86ea0a7bc198cd84a987c 332 PANTHER PTHR38782 6 332 1.7E-40 T 26-04-2016 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 Gene3D G3DSA:3.10.560.10 374 440 6.4E-10 T 26-04-2016 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 Gene3D G3DSA:3.10.560.10 287 340 8.3E-10 T 26-04-2016 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 Gene3D G3DSA:3.10.560.10 198 282 2.9E-15 T 26-04-2016 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 Gene3D G3DSA:3.10.560.10 502 595 9.9E-14 T 26-04-2016 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 Gene3D G3DSA:3.30.1950.10 133 197 3.3E-10 T 26-04-2016 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 Pfam PF10531 SLBB domain 288 333 4.8E-8 T 26-04-2016 IPR019554 Soluble ligand binding domain RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 Pfam PF10531 SLBB domain 378 414 1.6E-7 T 26-04-2016 IPR019554 Soluble ligand binding domain RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 Pfam PF10531 SLBB domain 205 254 0.0025 T 26-04-2016 IPR019554 Soluble ligand binding domain RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 Pfam PF02563 Polysaccharide biosynthesis/export protein 126 198 5.9E-11 T 26-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 PANTHER PTHR33619 567 604 1.6E-61 T 26-04-2016 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 PANTHER PTHR33619 125 452 1.6E-61 T 26-04-2016 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 PANTHER PTHR33619 514 548 1.6E-61 T 26-04-2016 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 Pfam PF06251 Capsule biosynthesis GfcC 430 595 7.0E-10 T 26-04-2016 IPR010425 Domain of unknown function DUF1017 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 PANTHER PTHR33619:SF1 567 604 1.6E-61 T 26-04-2016 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 PANTHER PTHR33619:SF1 125 452 1.6E-61 T 26-04-2016 RGE_RS20135 6f115ad1d55e5c28e426dfc0ba577a6e 628 PANTHER PTHR33619:SF1 514 548 1.6E-61 T 26-04-2016 RGE_RS14570 03430ae4ca6a30a7baa78c8e6b6a92ce 299 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 260 296 1.6E-6 T 26-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 RGE_RS14570 03430ae4ca6a30a7baa78c8e6b6a92ce 299 PANTHER PTHR30015:SF4 79 292 4.3E-30 T 26-04-2016 RGE_RS14570 03430ae4ca6a30a7baa78c8e6b6a92ce 299 PANTHER PTHR30015 79 292 4.3E-30 T 26-04-2016 RGE_RS14570 03430ae4ca6a30a7baa78c8e6b6a92ce 299 Gene3D G3DSA:3.30.65.10 260 296 9.4E-5 T 26-04-2016 RGE_RS14570 03430ae4ca6a30a7baa78c8e6b6a92ce 299 Pfam PF04471 Restriction endonuclease 107 222 1.6E-32 T 26-04-2016 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 RGE_RS14570 03430ae4ca6a30a7baa78c8e6b6a92ce 299 SUPERFAMILY SSF52980 111 225 5.09E-26 T 26-04-2016 IPR011335 Restriction endonuclease type II-like RGE_RS14570 03430ae4ca6a30a7baa78c8e6b6a92ce 299 Gene3D G3DSA:3.40.1350.10 105 226 8.0E-31 T 26-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 RGE_RS14570 03430ae4ca6a30a7baa78c8e6b6a92ce 299 SUPERFAMILY SSF57783 258 297 1.5E-5 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:1.20.1580.10 705 835 3.5E-41 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:1.20.1580.10 1639 1765 1.5E-49 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 SUPERFAMILY SSF52540 1363 1502 1.85E-37 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:3.30.1490.20 176 240 1.2E-5 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 SUPERFAMILY SSF52540 1006 1204 1.85E-37 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 SUPERFAMILY SSF52540 1628 1867 3.77E-43 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 SUPERFAMILY SSF52540 1547 1594 3.77E-43 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 947 1.8E-277 T 26-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 PANTHER PTHR32282 1424 1596 0.0 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 PANTHER PTHR32282 1619 1895 0.0 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 PANTHER PTHR32282 437 510 0.0 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 PANTHER PTHR32282 2 405 0.0 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:1.10.8.280 278 387 1.4E-19 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 SUPERFAMILY SSF52540 445 582 9.37E-38 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 PANTHER PTHR32282:SF2 1424 1596 0.0 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 PANTHER PTHR32282:SF2 1619 1895 0.0 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 PANTHER PTHR32282:SF2 437 510 0.0 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 PANTHER PTHR32282:SF2 2 405 0.0 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 ProSitePatterns PS00211 ABC transporters family signature. 1775 1789 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 ProSitePatterns PS00211 ABC transporters family signature. 845 859 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 ProSitePatterns PS00211 ABC transporters family signature. 1420 1434 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 SUPERFAMILY SSF52540 6 212 9.37E-38 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:3.40.50.300 649 692 4.7E-6 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:1.20.1580.10 94 131 5.6E-39 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:1.20.1580.10 1339 1410 2.5E-50 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:1.20.1580.10 243 276 5.6E-39 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:1.20.1580.10 1094 1129 2.5E-50 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:1.20.1580.10 1264 1297 2.5E-50 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:1.20.1580.10 388 405 5.6E-39 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:1.20.1580.10 437 490 5.6E-39 T 26-04-2016 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:3.40.50.300 2 53 1.6E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:3.40.50.300 1766 1887 7.4E-52 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:3.40.50.300 1411 1532 7.7E-58 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:3.40.50.300 623 648 1.7E-51 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:3.40.50.300 702 703 1.7E-51 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:3.40.50.300 491 603 1.6E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:3.40.50.300 1536 1605 7.4E-52 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:3.40.50.300 994 1058 7.7E-58 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Gene3D G3DSA:3.40.50.300 836 962 1.7E-51 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 SMART SM00382 1565 1860 0.24 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 SMART SM00382 1023 1497 5.3 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 SMART SM00382 25 577 8.3 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 SMART SM00382 644 968 1.7 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 Pfam PF00005 ABC transporter 635 863 5.9E-6 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS21085 35c470ee76a556bb38e5de9082abee79 1895 SUPERFAMILY SSF52540 630 936 5.69E-40 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01085 c06656bb90e453dcfa15cbf6b8728563 139 PANTHER PTHR13822 1 138 6.2E-44 T 26-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01085 c06656bb90e453dcfa15cbf6b8728563 139 SUPERFAMILY SSF46604 89 137 8.11E-11 T 26-04-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain RGE_RS01085 c06656bb90e453dcfa15cbf6b8728563 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 2.4E-42 T 26-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01085 c06656bb90e453dcfa15cbf6b8728563 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 91 1.0E-33 T 26-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01085 c06656bb90e453dcfa15cbf6b8728563 139 Gene3D G3DSA:1.20.5.440 93 135 3.1E-11 T 26-04-2016 RGE_RS01085 c06656bb90e453dcfa15cbf6b8728563 139 SUPERFAMILY SSF51344 3 87 3.79E-25 T 26-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01085 c06656bb90e453dcfa15cbf6b8728563 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 85 4.1E-31 T 26-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01085 c06656bb90e453dcfa15cbf6b8728563 139 Gene3D G3DSA:2.60.15.10 4 92 1.6E-32 T 26-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01085 c06656bb90e453dcfa15cbf6b8728563 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 132 21.655 T 26-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RGE_RS01085 c06656bb90e453dcfa15cbf6b8728563 139 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 90 134 1.8E-6 T 26-04-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain RGE_RS03970 298dff1114da87d00f305c0611ac6a28 327 Gene3D G3DSA:1.10.3720.10 88 311 2.4E-18 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS03970 298dff1114da87d00f305c0611ac6a28 327 PANTHER PTHR30465:SF47 1 320 1.0E-150 T 26-04-2016 RGE_RS03970 298dff1114da87d00f305c0611ac6a28 327 SUPERFAMILY SSF161098 90 304 1.53E-18 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS03970 298dff1114da87d00f305c0611ac6a28 327 PANTHER PTHR30465 1 320 1.0E-150 T 26-04-2016 RGE_RS03970 298dff1114da87d00f305c0611ac6a28 327 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 319 7.5E-42 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 Pfam PF00128 Alpha amylase, catalytic domain 124 208 2.4E-11 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 Pfam PF00128 Alpha amylase, catalytic domain 236 433 1.4E-4 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 Gene3D G3DSA:2.60.40.10 13 93 9.0E-18 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 PIRSF PIRSF006337 6 564 9.4E-172 T 26-04-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 19 529 1.4E-167 T 26-04-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 Gene3D G3DSA:3.20.20.80 469 506 2.4E-74 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 Gene3D G3DSA:3.20.20.80 102 434 2.4E-74 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 SUPERFAMILY SSF81296 4 93 4.9E-15 T 26-04-2016 IPR014756 Immunoglobulin E-set RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 PANTHER PTHR10357 7 316 8.2E-83 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 SMART SM00642 114 455 1.9E-9 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 PANTHER PTHR10357:SF110 339 506 8.2E-83 T 26-04-2016 RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 PANTHER PTHR10357:SF110 7 316 8.2E-83 T 26-04-2016 RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 SUPERFAMILY SSF51445 100 507 2.26E-92 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS10895 94143dc178b01e1931cc2821cc257e58 582 PANTHER PTHR10357 339 506 8.2E-83 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 Gene3D G3DSA:3.30.450.20 328 469 4.3E-20 T 26-04-2016 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 SUPERFAMILY SSF52172 736 852 9.53E-25 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 Gene3D G3DSA:1.10.287.130 473 539 7.5E-4 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 PANTHER PTHR24423:SF544 338 851 9.3E-114 T 26-04-2016 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 SUPERFAMILY SSF55874 534 711 7.47E-33 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 SMART SM00388 477 543 7.1E-9 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 Pfam PF00512 His Kinase A (phospho-acceptor) domain 477 539 4.0E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 Gene3D G3DSA:3.40.50.2300 733 852 1.8E-23 T 26-04-2016 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 SUPERFAMILY SSF55785 327 453 6.46E-16 T 26-04-2016 IPR000014 PAS domain RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 Pfam PF08447 PAS fold 364 442 1.2E-11 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 PANTHER PTHR24423 23 33 9.3E-114 T 26-04-2016 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 Gene3D G3DSA:3.30.450.20 104 196 2.3E-5 T 26-04-2016 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 584 710 1.3E-16 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 SMART SM00387 584 713 3.1E-27 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 PANTHER PTHR24423:SF544 23 33 9.3E-114 T 26-04-2016 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 SMART SM00448 734 847 2.7E-13 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 Gene3D G3DSA:3.30.565.10 546 711 5.8E-33 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 Pfam PF00072 Response regulator receiver domain 737 847 7.5E-14 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 346 461 3.6E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 PANTHER PTHR24423 338 851 9.3E-114 T 26-04-2016 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 664 1.4E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 PRINTS PR00344 Bacterial sensor protein C-terminal signature 697 710 1.4E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 PRINTS PR00344 Bacterial sensor protein C-terminal signature 636 650 1.4E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 PRINTS PR00344 Bacterial sensor protein C-terminal signature 673 691 1.4E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23095 8e753c1471a365d7aa5b0e769083c9ae 853 SUPERFAMILY SSF47384 472 539 6.47E-9 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 Pfam PF00072 Response regulator receiver domain 761 883 1.4E-7 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 SUPERFAMILY SSF55874 574 742 6.29E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 SUPERFAMILY SSF53850 253 468 7.03E-28 T 26-04-2016 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 Gene3D G3DSA:3.40.190.10 14 131 3.8E-19 T 26-04-2016 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 PANTHER PTHR24423 499 872 6.8E-62 T 26-04-2016 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 Gene3D G3DSA:3.40.190.10 253 330 1.5E-9 T 26-04-2016 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 Gene3D G3DSA:3.40.190.10 436 470 1.5E-9 T 26-04-2016 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 633 743 1.3E-20 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 SMART SM00388 520 585 3.0E-6 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 SMART SM00387 632 746 2.8E-30 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 Gene3D G3DSA:3.30.565.10 586 748 5.9E-39 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 SUPERFAMILY SSF47384 505 586 1.39E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 PANTHER PTHR24423:SF414 499 872 6.8E-62 T 26-04-2016 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 Gene3D G3DSA:3.40.50.2300 760 887 1.0E-14 T 26-04-2016 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 SMART SM00448 759 883 9.9E-10 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 SUPERFAMILY SSF52172 760 889 2.99E-16 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 PRINTS PR00344 Bacterial sensor protein C-terminal signature 706 724 3.9E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 PRINTS PR00344 Bacterial sensor protein C-terminal signature 730 743 3.9E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 PRINTS PR00344 Bacterial sensor protein C-terminal signature 693 703 3.9E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 PRINTS PR00344 Bacterial sensor protein C-terminal signature 675 689 3.9E-12 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 Gene3D G3DSA:1.10.287.130 511 578 1.6E-5 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 SUPERFAMILY SSF53850 18 235 7.1E-35 T 26-04-2016 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 Gene3D G3DSA:3.40.190.10 132 189 9.7E-10 T 26-04-2016 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 Gene3D G3DSA:3.40.190.10 331 404 3.8E-6 T 26-04-2016 RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 SMART SM00062 252 472 2.5E-6 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 SMART SM00062 15 237 6.6E-9 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 17 234 1.9E-31 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS09815 507baa56c0d3ee48e8e7c129edb86d7a 895 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 253 424 2.4E-17 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 261 315 - T 26-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PANTHER PTHR10422:SF27 19 547 0.0 T 26-04-2016 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 SUPERFAMILY SSF81442 29 538 2.88E-192 T 26-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PANTHER PTHR10422 19 547 0.0 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 34 537 2.2E-210 T 26-04-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 42 483 5.8E-151 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 Gene3D G3DSA:1.20.210.10 21 541 1.0E-214 T 26-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PRINTS PR01165 Cytochrome c oxidase subunit I signature 208 227 5.1E-120 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PRINTS PR01165 Cytochrome c oxidase subunit I signature 259 280 5.1E-120 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PRINTS PR01165 Cytochrome c oxidase subunit I signature 107 131 5.1E-120 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PRINTS PR01165 Cytochrome c oxidase subunit I signature 442 463 5.1E-120 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PRINTS PR01165 Cytochrome c oxidase subunit I signature 80 103 5.1E-120 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PRINTS PR01165 Cytochrome c oxidase subunit I signature 305 320 5.1E-120 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PRINTS PR01165 Cytochrome c oxidase subunit I signature 364 382 5.1E-120 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PRINTS PR01165 Cytochrome c oxidase subunit I signature 150 162 5.1E-120 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PRINTS PR01165 Cytochrome c oxidase subunit I signature 329 350 5.1E-120 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PRINTS PR01165 Cytochrome c oxidase subunit I signature 392 411 5.1E-120 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PRINTS PR01165 Cytochrome c oxidase subunit I signature 179 197 5.1E-120 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS20400 3f778d840a510dc0c5ff2cdb878249c5 547 PRINTS PR01165 Cytochrome c oxidase subunit I signature 33 58 5.1E-120 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS16705 472d850b47b049cca2289d25ff268017 578 Gene3D G3DSA:1.20.1250.20 16 203 1.6E-9 T 26-04-2016 RGE_RS16705 472d850b47b049cca2289d25ff268017 578 PANTHER PTHR10434 348 536 1.9E-35 T 26-04-2016 RGE_RS16705 472d850b47b049cca2289d25ff268017 578 Pfam PF07690 Major Facilitator Superfamily 21 328 2.2E-15 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS16705 472d850b47b049cca2289d25ff268017 578 Gene3D G3DSA:1.20.1250.20 229 428 3.0E-13 T 26-04-2016 RGE_RS16705 472d850b47b049cca2289d25ff268017 578 SUPERFAMILY SSF103473 15 428 2.22E-32 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS16705 472d850b47b049cca2289d25ff268017 578 PANTHER PTHR10434:SF15 348 536 1.9E-35 T 26-04-2016 RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 Gene3D G3DSA:3.40.50.720 1 90 7.4E-39 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 Pfam PF08245 Mur ligase middle domain 108 292 1.5E-25 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 449 57.79 T 26-04-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 UniPathway: UPA00544 RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 Pfam PF02875 Mur ligase family, glutamate ligase domain 312 360 2.7E-10 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 Pfam PF01225 Mur ligase family, catalytic domain 2 98 3.6E-15 T 26-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 Gene3D G3DSA:3.90.190.20 314 449 7.6E-31 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 SUPERFAMILY SSF53244 312 448 4.84E-34 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 Gene3D G3DSA:3.40.1190.10 92 313 3.4E-91 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 PANTHER PTHR23135 1 439 7.1E-231 T 26-04-2016 RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 SUPERFAMILY SSF51984 1 89 2.22E-19 T 26-04-2016 RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 7.2E-207 T 26-04-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 UniPathway: UPA00544 RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 PANTHER PTHR23135:SF17 1 439 7.1E-231 T 26-04-2016 RGE_RS20545 13525c4d046053a0b82644b4d09fc898 452 SUPERFAMILY SSF53623 95 310 1.57E-52 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS12785 cb0d53cc449c92e0cf92c4d9dbca17de 310 PANTHER PTHR30193:SF5 17 310 7.2E-106 T 26-04-2016 RGE_RS12785 cb0d53cc449c92e0cf92c4d9dbca17de 310 PANTHER PTHR30193 17 310 7.2E-106 T 26-04-2016 RGE_RS12785 cb0d53cc449c92e0cf92c4d9dbca17de 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 302 4.0E-15 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12785 cb0d53cc449c92e0cf92c4d9dbca17de 310 SUPERFAMILY SSF161098 15 304 1.31E-53 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12785 cb0d53cc449c92e0cf92c4d9dbca17de 310 Gene3D G3DSA:1.10.3720.10 14 300 1.2E-51 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS06410 51f463737b271639a7bb36eb7af0a1f3 251 PANTHER PTHR30614 17 98 6.0E-63 T 26-04-2016 RGE_RS06410 51f463737b271639a7bb36eb7af0a1f3 251 PANTHER PTHR30614 115 248 6.0E-63 T 26-04-2016 RGE_RS06410 51f463737b271639a7bb36eb7af0a1f3 251 Gene3D G3DSA:1.10.3720.10 19 244 1.3E-47 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS06410 51f463737b271639a7bb36eb7af0a1f3 251 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 20 87 7.2E-18 T 26-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RGE_RS06410 51f463737b271639a7bb36eb7af0a1f3 251 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 41 242 1.0E-19 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS06410 51f463737b271639a7bb36eb7af0a1f3 251 SUPERFAMILY SSF161098 20 234 8.24E-41 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS23170 fd76dbfcb1593a096053eafaf6bc3585 406 Gene3D G3DSA:3.40.50.2300 8 136 2.1E-14 T 26-04-2016 RGE_RS23170 fd76dbfcb1593a096053eafaf6bc3585 406 PANTHER PTHR33121:SF13 170 400 2.3E-16 T 26-04-2016 RGE_RS23170 fd76dbfcb1593a096053eafaf6bc3585 406 SMART SM00052 152 393 1.1E-16 T 26-04-2016 IPR001633 EAL domain RGE_RS23170 fd76dbfcb1593a096053eafaf6bc3585 406 Pfam PF00072 Response regulator receiver domain 11 120 1.1E-6 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23170 fd76dbfcb1593a096053eafaf6bc3585 406 PANTHER PTHR33121 170 400 2.3E-16 T 26-04-2016 RGE_RS23170 fd76dbfcb1593a096053eafaf6bc3585 406 Pfam PF00563 EAL domain 171 387 7.4E-32 T 26-04-2016 IPR001633 EAL domain RGE_RS23170 fd76dbfcb1593a096053eafaf6bc3585 406 SMART SM00448 8 130 0.0038 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23170 fd76dbfcb1593a096053eafaf6bc3585 406 SUPERFAMILY SSF141868 171 399 3.92E-33 T 26-04-2016 IPR001633 EAL domain RGE_RS23170 fd76dbfcb1593a096053eafaf6bc3585 406 Gene3D G3DSA:3.20.20.450 171 400 4.0E-38 T 26-04-2016 IPR001633 EAL domain RGE_RS23170 fd76dbfcb1593a096053eafaf6bc3585 406 SUPERFAMILY SSF52172 7 144 7.68E-13 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 Gene3D G3DSA:1.10.1140.10 351 466 6.2E-56 T 26-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 PANTHER PTHR15184:SF44 1 466 0.0 T 26-04-2016 RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 465 56.539 T 26-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 SMART SM00382 140 332 0.003 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 347 8.6E-61 T 26-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 Gene3D G3DSA:2.40.10.170 2 72 6.7E-28 T 26-04-2016 RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 PANTHER PTHR15184 1 466 0.0 T 26-04-2016 RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 SUPERFAMILY SSF47917 350 465 3.66E-54 T 26-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 SUPERFAMILY SSF50615 2 72 3.4E-24 T 26-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 465 6.6E-247 T 26-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 Gene3D G3DSA:3.40.50.300 75 348 3.2E-109 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 SUPERFAMILY SSF52540 75 352 2.32E-86 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 338 347 - T 26-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS01090 7fc3a682a78401b39567059d05938a2d 466 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 71 7.7E-19 T 26-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 PANTHER PTHR24423:SF439 195 442 3.6E-71 T 26-04-2016 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 PANTHER PTHR24423:SF439 1 30 3.6E-71 T 26-04-2016 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 SUPERFAMILY SSF47384 200 278 1.96E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 SUPERFAMILY SSF55874 267 432 1.09E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 PANTHER PTHR24423 195 442 3.6E-71 T 26-04-2016 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 PANTHER PTHR24423 1 30 3.6E-71 T 26-04-2016 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 Gene3D G3DSA:1.10.287.130 205 273 3.1E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 SMART SM00387 321 433 1.9E-26 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 Gene3D G3DSA:3.30.565.10 280 435 3.2E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 Pfam PF00512 His Kinase A (phospho-acceptor) domain 212 277 2.3E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 411 1.2E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 371 1.2E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 385 1.2E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 430 1.2E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 SMART SM00388 212 277 7.1E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17980 e547c197aec425113e8386e4d50d94fb 444 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 323 432 1.0E-18 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS12840 a942b8aaf24e5eb3a36e5173ddd622d4 268 PANTHER PTHR10992 19 266 3.2E-77 T 26-04-2016 RGE_RS12840 a942b8aaf24e5eb3a36e5173ddd622d4 268 SUPERFAMILY SSF53474 6 264 2.82E-52 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12840 a942b8aaf24e5eb3a36e5173ddd622d4 268 PANTHER PTHR10992:SF841 19 266 3.2E-77 T 26-04-2016 RGE_RS12840 a942b8aaf24e5eb3a36e5173ddd622d4 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 44 59 3.5E-8 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS12840 a942b8aaf24e5eb3a36e5173ddd622d4 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 3.5E-8 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS12840 a942b8aaf24e5eb3a36e5173ddd622d4 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 3.5E-8 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS12840 a942b8aaf24e5eb3a36e5173ddd622d4 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 210 224 3.5E-8 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS12840 a942b8aaf24e5eb3a36e5173ddd622d4 268 Pfam PF00561 alpha/beta hydrolase fold 20 251 2.6E-25 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS12840 a942b8aaf24e5eb3a36e5173ddd622d4 268 Gene3D G3DSA:3.40.50.1820 6 265 3.1E-62 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS20815 eab2d8c62b2661a68ff9e9ddd084b7da 64 Gene3D G3DSA:3.30.70.20 5 58 3.0E-14 T 26-04-2016 RGE_RS20815 eab2d8c62b2661a68ff9e9ddd084b7da 64 SUPERFAMILY SSF54862 5 59 3.24E-15 T 26-04-2016 RGE_RS20815 eab2d8c62b2661a68ff9e9ddd084b7da 64 Pfam PF00037 4Fe-4S binding domain 4 26 4.2E-7 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS20815 eab2d8c62b2661a68ff9e9ddd084b7da 64 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS20815 eab2d8c62b2661a68ff9e9ddd084b7da 64 PANTHER PTHR24960:SF38 4 63 6.5E-12 T 26-04-2016 RGE_RS20815 eab2d8c62b2661a68ff9e9ddd084b7da 64 PANTHER PTHR24960 4 63 6.5E-12 T 26-04-2016 RGE_RS06930 cd46864cb72297adef3d0b765afafdf9 290 Pfam PF02535 ZIP Zinc transporter 146 285 5.3E-19 T 26-04-2016 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 RGE_RS06930 cd46864cb72297adef3d0b765afafdf9 290 PANTHER PTHR11040 53 289 4.3E-69 T 26-04-2016 RGE_RS06930 cd46864cb72297adef3d0b765afafdf9 290 PANTHER PTHR11040:SF33 53 289 4.3E-69 T 26-04-2016 RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 244 362 2.7E-13 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 SMART SM00387 244 363 7.3E-23 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 SUPERFAMILY SSF55874 208 361 8.38E-32 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 PRINTS PR00344 Bacterial sensor protein C-terminal signature 314 324 5.1E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 343 5.1E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 PRINTS PR00344 Bacterial sensor protein C-terminal signature 296 310 5.1E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 361 5.1E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 PANTHER PTHR24423:SF488 105 362 2.9E-78 T 26-04-2016 RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 Gene3D G3DSA:3.30.565.10 207 362 1.8E-33 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 Gene3D G3DSA:1.10.287.130 131 197 4.2E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 SUPERFAMILY SSF47384 129 200 3.34E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 SMART SM00388 139 204 4.0E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 Gene3D G3DSA:3.30.450.20 17 113 7.8E-4 T 26-04-2016 RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 Pfam PF00512 His Kinase A (phospho-acceptor) domain 141 200 4.2E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07065 50783bd975b8617538d1c1c71986943a 363 PANTHER PTHR24423 105 362 2.9E-78 T 26-04-2016 RGE_RS05870 00884fc5d7cba9110e0ffd84cbc33902 440 PANTHER PTHR11785:SF261 4 423 1.2E-62 T 26-04-2016 RGE_RS05870 00884fc5d7cba9110e0ffd84cbc33902 440 Pfam PF13520 Amino acid permease 3 397 8.7E-40 T 26-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RGE_RS05870 00884fc5d7cba9110e0ffd84cbc33902 440 PIRSF PIRSF006060 1 440 1.9E-61 T 26-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RGE_RS05870 00884fc5d7cba9110e0ffd84cbc33902 440 PANTHER PTHR11785 4 423 1.2E-62 T 26-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RGE_RS20810 f7d6ca5e47067e4e913cdfb8ae5b53d8 524 SUPERFAMILY SSF102114 67 282 4.19E-35 T 26-04-2016 RGE_RS20810 f7d6ca5e47067e4e913cdfb8ae5b53d8 524 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 79 90 - T 26-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS20810 f7d6ca5e47067e4e913cdfb8ae5b53d8 524 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 397 490 2.3E-21 T 26-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RGE_RS20810 f7d6ca5e47067e4e913cdfb8ae5b53d8 524 Gene3D G3DSA:3.20.20.70 69 333 5.4E-44 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS20810 f7d6ca5e47067e4e913cdfb8ae5b53d8 524 SUPERFAMILY SSF53146 387 496 3.66E-30 T 26-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RGE_RS20810 f7d6ca5e47067e4e913cdfb8ae5b53d8 524 Gene3D G3DSA:3.30.420.130 386 496 2.1E-34 T 26-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RGE_RS20810 f7d6ca5e47067e4e913cdfb8ae5b53d8 524 PANTHER PTHR11228:SF18 48 438 5.7E-113 T 26-04-2016 RGE_RS20810 f7d6ca5e47067e4e913cdfb8ae5b53d8 524 Pfam PF04055 Radical SAM superfamily 79 257 2.5E-27 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS20810 f7d6ca5e47067e4e913cdfb8ae5b53d8 524 PANTHER PTHR11228 48 438 5.7E-113 T 26-04-2016 RGE_RS20810 f7d6ca5e47067e4e913cdfb8ae5b53d8 524 TIGRFAM TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB 52 489 3.1E-204 T 26-04-2016 IPR005980 Nitrogenase cofactor biosynthesis protein NifB GO:0009108|GO:0009399 RGE_RS15260 7b13f8add4648dcd698ac6f7f621ed13 516 Gene3D G3DSA:1.20.1250.20 22 209 1.7E-33 T 26-04-2016 RGE_RS15260 7b13f8add4648dcd698ac6f7f621ed13 516 Gene3D G3DSA:1.20.1250.20 480 507 1.8E-19 T 26-04-2016 RGE_RS15260 7b13f8add4648dcd698ac6f7f621ed13 516 Gene3D G3DSA:1.20.1250.20 275 433 1.8E-19 T 26-04-2016 RGE_RS15260 7b13f8add4648dcd698ac6f7f621ed13 516 PANTHER PTHR23501 1 505 3.7E-209 T 26-04-2016 RGE_RS15260 7b13f8add4648dcd698ac6f7f621ed13 516 PANTHER PTHR23501:SF52 1 505 3.7E-209 T 26-04-2016 RGE_RS15260 7b13f8add4648dcd698ac6f7f621ed13 516 Pfam PF07690 Major Facilitator Superfamily 29 421 3.9E-58 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS15260 7b13f8add4648dcd698ac6f7f621ed13 516 SUPERFAMILY SSF103473 479 504 4.19E-65 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS15260 7b13f8add4648dcd698ac6f7f621ed13 516 SUPERFAMILY SSF103473 12 205 4.19E-65 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS15260 7b13f8add4648dcd698ac6f7f621ed13 516 SUPERFAMILY SSF103473 260 431 4.19E-65 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS15260 7b13f8add4648dcd698ac6f7f621ed13 516 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 25 500 1.5E-130 T 26-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 RGE_RS17265 7e758a22284634b0b85c57dfcef0e832 131 Gene3D G3DSA:1.10.490.10 7 129 5.9E-41 T 26-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RGE_RS17265 7e758a22284634b0b85c57dfcef0e832 131 PANTHER PTHR10681 6 112 4.8E-14 T 26-04-2016 RGE_RS17265 7e758a22284634b0b85c57dfcef0e832 131 Pfam PF01152 Bacterial-like globin 10 127 1.8E-38 T 26-04-2016 IPR001486 Truncated hemoglobin GO:0019825 RGE_RS17265 7e758a22284634b0b85c57dfcef0e832 131 SUPERFAMILY SSF46458 8 129 4.52E-35 T 26-04-2016 IPR009050 Globin-like RGE_RS05100 4ec852b4adcb3f4a3acfa8df65f2158b 265 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 17 44 6.6E-48 T 26-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RGE_RS05100 4ec852b4adcb3f4a3acfa8df65f2158b 265 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 165 193 6.6E-48 T 26-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RGE_RS05100 4ec852b4adcb3f4a3acfa8df65f2158b 265 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 114 140 6.6E-48 T 26-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RGE_RS05100 4ec852b4adcb3f4a3acfa8df65f2158b 265 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 96 114 6.6E-48 T 26-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RGE_RS05100 4ec852b4adcb3f4a3acfa8df65f2158b 265 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 7 263 18.748 T 26-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RGE_RS05100 4ec852b4adcb3f4a3acfa8df65f2158b 265 PANTHER PTHR30371:SF0 2 261 1.0E-99 T 26-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RGE_RS05100 4ec852b4adcb3f4a3acfa8df65f2158b 265 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 19 237 8.4E-69 T 26-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RGE_RS05100 4ec852b4adcb3f4a3acfa8df65f2158b 265 Pfam PF00902 Sec-independent protein translocase protein (TatC) 21 232 1.3E-64 T 26-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RGE_RS05100 4ec852b4adcb3f4a3acfa8df65f2158b 265 PANTHER PTHR30371 2 261 1.0E-99 T 26-04-2016 RGE_RS05100 4ec852b4adcb3f4a3acfa8df65f2158b 265 ProSitePatterns PS01218 TatC family signature. 165 184 - T 26-04-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site RGE_RS18805 3782dcab8b1e99e852908265703abdb4 203 Hamap MF_00528 Septum formation protein Maf [maf]. 5 201 27.756 T 26-04-2016 IPR003697 Maf-like protein GO:0005737 RGE_RS18805 3782dcab8b1e99e852908265703abdb4 203 TIGRFAM TIGR00172 maf: septum formation protein Maf 6 194 2.2E-41 T 26-04-2016 IPR003697 Maf-like protein GO:0005737 RGE_RS18805 3782dcab8b1e99e852908265703abdb4 203 SUPERFAMILY SSF52972 3 195 7.19E-51 T 26-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RGE_RS18805 3782dcab8b1e99e852908265703abdb4 203 Gene3D G3DSA:3.90.950.10 5 199 3.5E-60 T 26-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RGE_RS18805 3782dcab8b1e99e852908265703abdb4 203 Pfam PF02545 Maf-like protein 6 196 7.3E-47 T 26-04-2016 IPR003697 Maf-like protein GO:0005737 RGE_RS18805 3782dcab8b1e99e852908265703abdb4 203 PIRSF PIRSF006305 1 202 2.0E-45 T 26-04-2016 IPR003697 Maf-like protein GO:0005737 RGE_RS17310 719dfb4c123490f5a71901f295bcc5cd 241 PANTHER PTHR11953 3 239 1.7E-78 T 26-04-2016 RGE_RS17310 719dfb4c123490f5a71901f295bcc5cd 241 PANTHER PTHR11953:SF0 3 239 1.7E-78 T 26-04-2016 RGE_RS17310 719dfb4c123490f5a71901f295bcc5cd 241 Gene3D G3DSA:3.30.230.70 8 239 3.1E-30 T 26-04-2016 IPR027408 PNPase/RNase PH domain RGE_RS17310 719dfb4c123490f5a71901f295bcc5cd 241 SUPERFAMILY SSF54211 4 184 5.06E-44 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS17310 719dfb4c123490f5a71901f295bcc5cd 241 ProSitePatterns PS01277 Ribonuclease PH signature. 119 132 - T 26-04-2016 IPR018336 Ribonuclease PH, conserved site RGE_RS17310 719dfb4c123490f5a71901f295bcc5cd 241 Pfam PF03725 3' exoribonuclease family, domain 2 161 226 3.2E-9 T 26-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RGE_RS17310 719dfb4c123490f5a71901f295bcc5cd 241 SUPERFAMILY SSF55666 155 239 2.23E-25 T 26-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RGE_RS17310 719dfb4c123490f5a71901f295bcc5cd 241 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 5 239 1.6E-118 T 26-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 RGE_RS17310 719dfb4c123490f5a71901f295bcc5cd 241 Hamap MF_00564 Ribonuclease PH [rph]. 4 240 49.071 T 26-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 RGE_RS17310 719dfb4c123490f5a71901f295bcc5cd 241 Pfam PF01138 3' exoribonuclease family, domain 1 14 143 5.5E-22 T 26-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RGE_RS20275 b12cbcba6324a3e472441f508ac93c07 328 Gene3D G3DSA:3.40.50.720 6 173 1.1E-39 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20275 b12cbcba6324a3e472441f508ac93c07 328 Gene3D G3DSA:3.40.50.720 211 267 1.1E-39 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20275 b12cbcba6324a3e472441f508ac93c07 328 PANTHER PTHR10366 6 227 2.0E-133 T 26-04-2016 RGE_RS20275 b12cbcba6324a3e472441f508ac93c07 328 PANTHER PTHR10366 246 322 2.0E-133 T 26-04-2016 RGE_RS20275 b12cbcba6324a3e472441f508ac93c07 328 PANTHER PTHR10366:SF246 6 227 2.0E-133 T 26-04-2016 RGE_RS20275 b12cbcba6324a3e472441f508ac93c07 328 PANTHER PTHR10366:SF246 246 322 2.0E-133 T 26-04-2016 RGE_RS20275 b12cbcba6324a3e472441f508ac93c07 328 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 231 4.6E-71 T 26-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RGE_RS20275 b12cbcba6324a3e472441f508ac93c07 328 SUPERFAMILY SSF51735 6 323 8.67E-68 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20275 b12cbcba6324a3e472441f508ac93c07 328 Gene3D G3DSA:3.90.25.10 174 210 6.1E-36 T 26-04-2016 RGE_RS20275 b12cbcba6324a3e472441f508ac93c07 328 Gene3D G3DSA:3.90.25.10 268 314 6.1E-36 T 26-04-2016 RGE_RS20275 b12cbcba6324a3e472441f508ac93c07 328 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 4 323 46.753 T 26-04-2016 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00010+1.1.1.27|KEGG: 00051+1.1.1.271|KEGG: 00270+1.1.1.27|KEGG: 00520+1.1.1.271|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-66|MetaCyc: PWY-6901|UniPathway: UPA00128 RGE_RS00920 5e689167d69a2ceadf751135cca2e015 166 Gene3D G3DSA:3.40.630.30 3 162 4.4E-42 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS00920 5e689167d69a2ceadf751135cca2e015 166 SUPERFAMILY SSF55729 2 149 1.33E-37 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS00920 5e689167d69a2ceadf751135cca2e015 166 PANTHER PTHR13256 2 163 1.9E-29 T 26-04-2016 RGE_RS00920 5e689167d69a2ceadf751135cca2e015 166 Pfam PF13302 Acetyltransferase (GNAT) domain 8 146 1.5E-29 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS19890 23e7da24923e74c962943bc0c2019d6a 755 PANTHER PTHR32552 616 753 7.1E-35 T 26-04-2016 RGE_RS19890 23e7da24923e74c962943bc0c2019d6a 755 PANTHER PTHR32552 14 594 7.1E-35 T 26-04-2016 RGE_RS19890 23e7da24923e74c962943bc0c2019d6a 755 Gene3D G3DSA:2.170.130.10 47 159 2.1E-15 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS19890 23e7da24923e74c962943bc0c2019d6a 755 SUPERFAMILY SSF56935 20 753 3.95E-100 T 26-04-2016 RGE_RS19890 23e7da24923e74c962943bc0c2019d6a 755 Gene3D G3DSA:2.40.170.20 160 753 4.2E-91 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS19890 23e7da24923e74c962943bc0c2019d6a 755 Pfam PF07715 TonB-dependent Receptor Plug Domain 50 161 2.5E-14 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS19890 23e7da24923e74c962943bc0c2019d6a 755 PANTHER PTHR32552:SF37 616 753 7.1E-35 T 26-04-2016 RGE_RS19890 23e7da24923e74c962943bc0c2019d6a 755 PANTHER PTHR32552:SF37 14 594 7.1E-35 T 26-04-2016 RGE_RS19890 23e7da24923e74c962943bc0c2019d6a 755 Pfam PF00593 TonB dependent receptor 454 751 9.7E-31 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS05220 35197953b5790b68a56cd1d3e245ddcc 137 PANTHER PTHR35303 7 121 7.3E-38 T 26-04-2016 RGE_RS05220 35197953b5790b68a56cd1d3e245ddcc 137 PANTHER PTHR35303:SF1 7 121 7.3E-38 T 26-04-2016 RGE_RS05220 35197953b5790b68a56cd1d3e245ddcc 137 Pfam PF06155 Protein of unknown function (DUF971) 12 96 5.4E-28 T 26-04-2016 IPR010376 Domain of unknown function DUF971 Reactome: REACT_13|UniPathway: UPA00118 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 PANTHER PTHR32063:SF11 1 1043 0.0 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 PANTHER PTHR32063 1 1043 0.0 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 SUPERFAMILY SSF82693 682 731 6.8E-29 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 SUPERFAMILY SSF82693 575 681 1.52E-28 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 SUPERFAMILY SSF82693 277 333 4.55E-27 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 Gene3D G3DSA:3.30.70.1430 579 681 4.0E-32 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 Gene3D G3DSA:1.10.3850.10 825 1038 4.5E-55 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 Gene3D G3DSA:1.10.3850.10 284 501 2.1E-61 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 Gene3D G3DSA:3.30.70.1430 41 141 3.1E-33 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1043 0.0 T 26-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 Gene3D G3DSA:3.30.2090.10 184 278 2.0E-26 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 SUPERFAMILY SSF82714 732 817 2.35E-21 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 Pfam PF00873 AcrB/AcrD/AcrF family 4 1036 0.0 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 SUPERFAMILY SSF82866 841 1038 1.83E-45 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 SUPERFAMILY SSF82714 185 274 1.57E-20 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 SUPERFAMILY SSF82866 299 499 7.85E-52 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 SUPERFAMILY SSF82693 41 133 3.66E-27 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 SUPERFAMILY SSF82693 818 867 6.8E-29 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 Gene3D G3DSA:3.30.2090.10 732 818 7.1E-24 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 SUPERFAMILY SSF82693 138 184 4.55E-27 T 26-04-2016 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 PRINTS PR00702 Acriflavin resistance protein family signature 562 579 1.0E-93 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.0E-93 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.0E-93 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.0E-93 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 1.0E-93 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 1.0E-93 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 1.0E-93 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 PRINTS PR00702 Acriflavin resistance protein family signature 631 645 1.0E-93 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS00070 17fe4afdaa29c3ae99fc180e25268858 1080 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 1.0E-93 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS05995 a2889a00577c885649e42378c5c1f6d6 140 PANTHER PTHR10978:SF4 5 133 4.4E-19 T 26-04-2016 RGE_RS05995 a2889a00577c885649e42378c5c1f6d6 140 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 5 133 5.8E-30 T 26-04-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 RGE_RS05995 a2889a00577c885649e42378c5c1f6d6 140 PANTHER PTHR10978 5 133 4.4E-19 T 26-04-2016 RGE_RS05995 a2889a00577c885649e42378c5c1f6d6 140 PIRSF PIRSF000178 1 137 1.4E-24 T 26-04-2016 RGE_RS05995 a2889a00577c885649e42378c5c1f6d6 140 Gene3D G3DSA:1.20.1300.10 3 137 1.9E-34 T 26-04-2016 RGE_RS05995 a2889a00577c885649e42378c5c1f6d6 140 SUPERFAMILY SSF81343 4 136 9.37E-24 T 26-04-2016 RGE_RS05995 a2889a00577c885649e42378c5c1f6d6 140 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 131 4.0E-25 T 26-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 SUPERFAMILY SSF49493 216 299 7.72E-17 T 26-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 PANTHER PTHR24078 99 327 6.3E-61 T 26-04-2016 RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 PRINTS PR00625 DnaJ domain signature 7 25 8.6E-21 T 26-04-2016 IPR001623 DnaJ domain RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 PRINTS PR00625 DnaJ domain signature 61 80 8.6E-21 T 26-04-2016 IPR001623 DnaJ domain RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 PRINTS PR00625 DnaJ domain signature 25 40 8.6E-21 T 26-04-2016 IPR001623 DnaJ domain RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 PRINTS PR00625 DnaJ domain signature 41 61 8.6E-21 T 26-04-2016 IPR001623 DnaJ domain RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 Pfam PF00226 DnaJ domain 5 66 3.3E-23 T 26-04-2016 IPR001623 DnaJ domain RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 SUPERFAMILY SSF46565 2 108 1.09E-28 T 26-04-2016 IPR001623 DnaJ domain RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 PANTHER PTHR24078:SF190 99 327 6.3E-61 T 26-04-2016 RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 Gene3D G3DSA:1.10.287.110 2 116 1.6E-30 T 26-04-2016 IPR001623 DnaJ domain RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 PANTHER PTHR24078:SF190 4 76 6.3E-61 T 26-04-2016 RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 SMART SM00271 4 61 3.0E-26 T 26-04-2016 IPR001623 DnaJ domain RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 SUPERFAMILY SSF49493 131 223 5.49E-12 T 26-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 Pfam PF01556 DnaJ C terminal domain 138 288 1.9E-20 T 26-04-2016 IPR002939 Chaperone DnaJ, C-terminal RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 Gene3D G3DSA:2.60.260.20 213 288 1.2E-13 T 26-04-2016 RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 Gene3D G3DSA:2.60.260.20 126 208 2.8E-11 T 26-04-2016 RGE_RS10730 5e163446b115569c6722a54f9e7ba08c 327 PANTHER PTHR24078 4 76 6.3E-61 T 26-04-2016 RGE_RS22395 7808a094a248dee6b2d6f35490bb45d1 255 Gene3D G3DSA:3.60.20.10 1 251 1.2E-59 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS22395 7808a094a248dee6b2d6f35490bb45d1 255 PANTHER PTHR11907:SF10 1 248 1.2E-90 T 26-04-2016 RGE_RS22395 7808a094a248dee6b2d6f35490bb45d1 255 PANTHER PTHR11907 1 248 1.2E-90 T 26-04-2016 RGE_RS22395 7808a094a248dee6b2d6f35490bb45d1 255 SUPERFAMILY SSF56235 2 249 4.12E-37 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS22395 7808a094a248dee6b2d6f35490bb45d1 255 Pfam PF13230 Glutamine amidotransferases class-II 1 252 6.3E-110 T 26-04-2016 IPR026869 Putative glutamine amidotransferase type 2 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 26-04-2016 IPR018181 Heat shock protein 70, conserved site RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 PANTHER PTHR19375:SF173 2 645 0.0 T 26-04-2016 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 Pfam PF00012 Hsp70 protein 4 604 4.3E-262 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 SUPERFAMILY SSF100934 508 603 1.83E-22 T 26-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 SUPERFAMILY SSF100920 385 540 1.57E-62 T 26-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 338 352 - T 26-04-2016 IPR018181 Heat shock protein 70, conserved site RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 Gene3D G3DSA:3.30.420.40 320 362 1.1E-31 T 26-04-2016 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 Gene3D G3DSA:3.30.420.40 198 230 1.1E-31 T 26-04-2016 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 Gene3D G3DSA:1.20.1270.10 533 604 1.9E-29 T 26-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 Gene3D G3DSA:3.30.420.40 119 197 3.0E-63 T 26-04-2016 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 Gene3D G3DSA:3.30.420.40 4 52 3.0E-63 T 26-04-2016 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 Gene3D G3DSA:2.60.34.10 391 532 7.6E-73 T 26-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 643 36.945 T 26-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 SUPERFAMILY SSF53067 188 383 6.98E-68 T 26-04-2016 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 SUPERFAMILY SSF53067 4 183 4.7E-64 T 26-04-2016 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 Gene3D G3DSA:3.90.640.10 231 316 5.1E-30 T 26-04-2016 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 PANTHER PTHR19375 2 645 0.0 T 26-04-2016 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 Gene3D G3DSA:3.30.30.30 53 108 1.3E-25 T 26-04-2016 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 193 206 - T 26-04-2016 IPR018181 Heat shock protein 70, conserved site RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 604 1.6E-290 T 26-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 PRINTS PR00301 70kDa heat shock protein signature 335 351 7.3E-79 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 PRINTS PR00301 70kDa heat shock protein signature 470 486 7.3E-79 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 PRINTS PR00301 70kDa heat shock protein signature 3 16 7.3E-79 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 PRINTS PR00301 70kDa heat shock protein signature 199 209 7.3E-79 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 PRINTS PR00301 70kDa heat shock protein signature 366 386 7.3E-79 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 PRINTS PR00301 70kDa heat shock protein signature 31 43 7.3E-79 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 PRINTS PR00301 70kDa heat shock protein signature 54 62 7.3E-79 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 PRINTS PR00301 70kDa heat shock protein signature 389 408 7.3E-79 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS13180 52b1acb2d4beb05eeededa1412a9b446 645 PRINTS PR00301 70kDa heat shock protein signature 138 158 7.3E-79 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS19850 b81dbd78b00d0425e7fde48791d9c7f2 278 Gene3D G3DSA:3.40.190.10 231 267 2.5E-4 T 26-04-2016 RGE_RS19850 b81dbd78b00d0425e7fde48791d9c7f2 278 Gene3D G3DSA:3.40.190.10 28 113 2.5E-4 T 26-04-2016 RGE_RS19850 b81dbd78b00d0425e7fde48791d9c7f2 278 SMART SM00062 27 270 1.5E-6 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS19850 b81dbd78b00d0425e7fde48791d9c7f2 278 TIGRFAM TIGR03871 ABC_peri_MoxJ_2: quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein 27 271 1.4E-84 T 26-04-2016 IPR022448 Quinoprotein dehydrogenase-associated RGE_RS19850 b81dbd78b00d0425e7fde48791d9c7f2 278 SUPERFAMILY SSF53850 23 266 1.63E-16 T 26-04-2016 RGE_RS19850 b81dbd78b00d0425e7fde48791d9c7f2 278 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 101 267 1.4E-6 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS03320 fa22e8af386d74c7ddc98b258addd220 600 Gene3D G3DSA:3.40.50.970 382 575 3.2E-23 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS03320 fa22e8af386d74c7ddc98b258addd220 600 Gene3D G3DSA:3.40.50.970 6 178 1.8E-40 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS03320 fa22e8af386d74c7ddc98b258addd220 600 SUPERFAMILY SSF52467 202 359 4.73E-5 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS03320 fa22e8af386d74c7ddc98b258addd220 600 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 2 590 29.225 T 26-04-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 RGE_RS03320 fa22e8af386d74c7ddc98b258addd220 600 SUPERFAMILY SSF52518 391 575 2.59E-20 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS03320 fa22e8af386d74c7ddc98b258addd220 600 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 8 461 6.7E-103 T 26-04-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 RGE_RS03320 fa22e8af386d74c7ddc98b258addd220 600 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 8 152 6.3E-30 T 26-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RGE_RS03320 fa22e8af386d74c7ddc98b258addd220 600 SUPERFAMILY SSF52518 4 185 5.35E-30 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS03320 fa22e8af386d74c7ddc98b258addd220 600 PANTHER PTHR18968 6 571 1.8E-105 T 26-04-2016 RGE_RS03320 fa22e8af386d74c7ddc98b258addd220 600 PANTHER PTHR18968:SF114 6 571 1.8E-105 T 26-04-2016 RGE_RS03320 fa22e8af386d74c7ddc98b258addd220 600 PIRSF PIRSF004983 1 595 1.1E-115 T 26-04-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 RGE_RS09110 1e99c5b1788159c2f48324641b89a7a8 200 PANTHER PTHR38596:SF1 1 56 6.9E-63 T 26-04-2016 RGE_RS09110 1e99c5b1788159c2f48324641b89a7a8 200 PANTHER PTHR38596:SF1 79 199 6.9E-63 T 26-04-2016 RGE_RS09110 1e99c5b1788159c2f48324641b89a7a8 200 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 76 194 6.1E-43 T 26-04-2016 IPR020761 Uncharacterised protein family UPF0114, bacteria RGE_RS09110 1e99c5b1788159c2f48324641b89a7a8 200 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 199 82.904 T 26-04-2016 IPR020765 Uncharacterised protein family UPF0114, gammaproteobacteria GO:0005886 RGE_RS09110 1e99c5b1788159c2f48324641b89a7a8 200 PANTHER PTHR38596 1 56 6.9E-63 T 26-04-2016 RGE_RS09110 1e99c5b1788159c2f48324641b89a7a8 200 PANTHER PTHR38596 79 199 6.9E-63 T 26-04-2016 RGE_RS09110 1e99c5b1788159c2f48324641b89a7a8 200 Pfam PF03350 Uncharacterized protein family, UPF0114 19 157 3.9E-40 T 26-04-2016 IPR005134 Uncharacterised protein family UPF0114 RGE_RS13715 0a8d0005842567492a30cccc18fefc1f 552 Pfam PF02540 NAD synthase 278 527 6.3E-73 T 26-04-2016 IPR022310 NAD/GMP synthase RGE_RS13715 0a8d0005842567492a30cccc18fefc1f 552 PANTHER PTHR23090 1 550 2.3E-158 T 26-04-2016 RGE_RS13715 0a8d0005842567492a30cccc18fefc1f 552 TIGRFAM TIGR00552 nadE: NAD+ synthetase 285 531 3.2E-61 T 26-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 RGE_RS13715 0a8d0005842567492a30cccc18fefc1f 552 SUPERFAMILY SSF56317 1 260 7.59E-61 T 26-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RGE_RS13715 0a8d0005842567492a30cccc18fefc1f 552 Gene3D G3DSA:3.60.110.10 1 260 4.5E-63 T 26-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RGE_RS13715 0a8d0005842567492a30cccc18fefc1f 552 Pfam PF00795 Carbon-nitrogen hydrolase 2 259 2.4E-28 T 26-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RGE_RS13715 0a8d0005842567492a30cccc18fefc1f 552 Gene3D G3DSA:3.40.50.620 276 534 3.0E-76 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS13715 0a8d0005842567492a30cccc18fefc1f 552 SUPERFAMILY SSF52402 276 535 2.56E-78 T 26-04-2016 RGE_RS11360 5f41cb6675f9fa6d92278cef60a14ff5 334 Gene3D G3DSA:3.40.50.410 81 247 6.1E-13 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS11360 5f41cb6675f9fa6d92278cef60a14ff5 334 SUPERFAMILY SSF53300 81 235 1.08E-21 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS11360 5f41cb6675f9fa6d92278cef60a14ff5 334 Pfam PF13519 von Willebrand factor type A domain 84 204 4.2E-16 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS11360 5f41cb6675f9fa6d92278cef60a14ff5 334 SMART SM00327 81 276 6.9E-16 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS05005 22e79ba724493d7a4b4d80a95c9f9ef1 345 Pfam PF01207 Dihydrouridine synthase (Dus) 14 312 2.1E-96 T 26-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RGE_RS05005 22e79ba724493d7a4b4d80a95c9f9ef1 345 PANTHER PTHR11082:SF25 1 329 5.2E-122 T 26-04-2016 RGE_RS05005 22e79ba724493d7a4b4d80a95c9f9ef1 345 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 324 47.518 T 26-04-2016 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 RGE_RS05005 22e79ba724493d7a4b4d80a95c9f9ef1 345 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 26-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RGE_RS05005 22e79ba724493d7a4b4d80a95c9f9ef1 345 Gene3D G3DSA:3.20.20.70 7 246 5.1E-81 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS05005 22e79ba724493d7a4b4d80a95c9f9ef1 345 SUPERFAMILY SSF51395 10 322 2.93E-85 T 26-04-2016 RGE_RS05005 22e79ba724493d7a4b4d80a95c9f9ef1 345 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 4 321 1.1E-110 T 26-04-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 RGE_RS05005 22e79ba724493d7a4b4d80a95c9f9ef1 345 Gene3D G3DSA:1.10.1200.80 256 326 6.4E-19 T 26-04-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 RGE_RS05005 22e79ba724493d7a4b4d80a95c9f9ef1 345 PANTHER PTHR11082 1 329 5.2E-122 T 26-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RGE_RS05005 22e79ba724493d7a4b4d80a95c9f9ef1 345 PIRSF PIRSF006621 1 329 4.0E-100 T 26-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RGE_RS13285 efd92a5a8df075555eafc284f03a6856 394 Gene3D G3DSA:3.40.50.720 3 151 2.0E-53 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS13285 efd92a5a8df075555eafc284f03a6856 394 PANTHER PTHR30525 5 386 8.0E-204 T 26-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13285 efd92a5a8df075555eafc284f03a6856 394 SUPERFAMILY SSF69055 296 386 1.96E-24 T 26-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13285 efd92a5a8df075555eafc284f03a6856 394 Gene3D G3DSA:1.10.1740.10 307 389 6.2E-23 T 26-04-2016 RGE_RS13285 efd92a5a8df075555eafc284f03a6856 394 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 385 2.6E-141 T 26-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13285 efd92a5a8df075555eafc284f03a6856 394 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 7 133 2.0E-44 T 26-04-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13285 efd92a5a8df075555eafc284f03a6856 394 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 7 388 45.235 T 26-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13285 efd92a5a8df075555eafc284f03a6856 394 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 147 233 4.6E-38 T 26-04-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13285 efd92a5a8df075555eafc284f03a6856 394 PIRSF PIRSF006205 4 394 6.4E-146 T 26-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13285 efd92a5a8df075555eafc284f03a6856 394 SUPERFAMILY SSF55347 127 268 1.05E-58 T 26-04-2016 RGE_RS13285 efd92a5a8df075555eafc284f03a6856 394 Pfam PF13288 DXP reductoisomerase C-terminal domain 265 383 1.2E-35 T 26-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13285 efd92a5a8df075555eafc284f03a6856 394 SUPERFAMILY SSF51735 5 151 8.18E-45 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04235 f2f52f49783100e62309704743a6f4aa 259 SUPERFAMILY SSF51366 1 258 1.41E-87 T 26-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RGE_RS04235 f2f52f49783100e62309704743a6f4aa 259 Pfam PF00977 Histidine biosynthesis protein 5 242 8.5E-91 T 26-04-2016 IPR006062 Histidine biosynthesis GO:0000105 RGE_RS04235 f2f52f49783100e62309704743a6f4aa 259 PANTHER PTHR21235:SF2 1 259 2.6E-125 T 26-04-2016 RGE_RS04235 f2f52f49783100e62309704743a6f4aa 259 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 258 2.8E-113 T 26-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 RGE_RS04235 f2f52f49783100e62309704743a6f4aa 259 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 258 49.245 T 26-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 RGE_RS04235 f2f52f49783100e62309704743a6f4aa 259 Gene3D G3DSA:3.20.20.70 4 259 4.3E-110 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS04235 f2f52f49783100e62309704743a6f4aa 259 PANTHER PTHR21235 1 259 2.6E-125 T 26-04-2016 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 288 899 3.6E-213 T 26-04-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 SUPERFAMILY SSF48168 149 360 9.16E-62 T 26-04-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 PANTHER PTHR11573 145 951 0.0 T 26-04-2016 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 Gene3D G3DSA:3.20.70.20 278 483 1.3E-86 T 26-04-2016 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 Gene3D G3DSA:3.20.70.20 538 695 1.3E-86 T 26-04-2016 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 Gene3D G3DSA:3.20.70.20 857 901 1.3E-86 T 26-04-2016 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 Gene3D G3DSA:3.20.70.20 751 796 1.3E-86 T 26-04-2016 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 285 358 8.2E-23 T 26-04-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 740 762 - T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 SUPERFAMILY SSF51998 831 899 1.89E-180 T 26-04-2016 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 SUPERFAMILY SSF51998 361 800 1.89E-180 T 26-04-2016 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 Pfam PF03477 ATP cone domain 31 127 3.0E-16 T 26-04-2016 IPR005144 ATP-cone domain RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 Pfam PF02867 Ribonucleotide reductase, barrel domain 362 896 5.5E-180 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 PRINTS PR01183 Ribonucleotide reductase large chain signature 751 778 2.7E-44 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 PRINTS PR01183 Ribonucleotide reductase large chain signature 675 698 2.7E-44 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 PRINTS PR01183 Ribonucleotide reductase large chain signature 609 632 2.7E-44 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 PRINTS PR01183 Ribonucleotide reductase large chain signature 572 583 2.7E-44 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 PRINTS PR01183 Ribonucleotide reductase large chain signature 647 669 2.7E-44 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS20625 20b8bb503c65aaa3f6d0565334fbf5fa 951 PRINTS PR01183 Ribonucleotide reductase large chain signature 437 456 2.7E-44 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS11375 d7da4934dcb84e05e1b80d6f837439a6 339 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 44 177 1.9E-26 T 26-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RGE_RS11375 d7da4934dcb84e05e1b80d6f837439a6 339 PANTHER PTHR11603:SF148 1 339 2.5E-49 T 26-04-2016 RGE_RS11375 d7da4934dcb84e05e1b80d6f837439a6 339 SUPERFAMILY SSF52540 228 310 2.44E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11375 d7da4934dcb84e05e1b80d6f837439a6 339 SUPERFAMILY SSF52540 6 193 2.44E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11375 d7da4934dcb84e05e1b80d6f837439a6 339 SMART SM00382 41 185 0.0016 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11375 d7da4934dcb84e05e1b80d6f837439a6 339 PIRSF PIRSF002849 1 339 3.4E-79 T 26-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted RGE_RS11375 d7da4934dcb84e05e1b80d6f837439a6 339 Gene3D G3DSA:1.10.8.300 218 336 1.1E-22 T 26-04-2016 RGE_RS11375 d7da4934dcb84e05e1b80d6f837439a6 339 Gene3D G3DSA:3.40.50.300 26 193 1.0E-28 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11375 d7da4934dcb84e05e1b80d6f837439a6 339 PANTHER PTHR11603 1 339 2.5E-49 T 26-04-2016 RGE_RS05875 f7ea3706abb926d598389d65094f1122 828 SUPERFAMILY SSF56935 44 824 8.55E-99 T 26-04-2016 RGE_RS05875 f7ea3706abb926d598389d65094f1122 828 Gene3D G3DSA:2.40.170.20 184 828 1.5E-84 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS05875 f7ea3706abb926d598389d65094f1122 828 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 182 2.8E-18 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS05875 f7ea3706abb926d598389d65094f1122 828 PANTHER PTHR30069:SF4 25 827 1.2E-115 T 26-04-2016 RGE_RS05875 f7ea3706abb926d598389d65094f1122 828 PANTHER PTHR30069 25 827 1.2E-115 T 26-04-2016 RGE_RS05875 f7ea3706abb926d598389d65094f1122 828 Gene3D G3DSA:2.170.130.10 60 183 1.6E-26 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS05875 f7ea3706abb926d598389d65094f1122 828 Pfam PF00593 TonB dependent receptor 510 801 4.1E-29 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS05040 95301259533b8952b6edb5682d9b1157 293 Pfam PF00892 EamA-like transporter family 4 133 2.3E-10 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS05040 95301259533b8952b6edb5682d9b1157 293 Pfam PF00892 EamA-like transporter family 150 278 6.6E-16 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS05040 95301259533b8952b6edb5682d9b1157 293 PANTHER PTHR22911:SF23 1 288 4.9E-32 T 26-04-2016 RGE_RS05040 95301259533b8952b6edb5682d9b1157 293 SUPERFAMILY SSF103481 196 286 1.31E-10 T 26-04-2016 RGE_RS05040 95301259533b8952b6edb5682d9b1157 293 PANTHER PTHR22911 1 288 4.9E-32 T 26-04-2016 RGE_RS05040 95301259533b8952b6edb5682d9b1157 293 SUPERFAMILY SSF103481 35 135 2.09E-10 T 26-04-2016 RGE_RS21180 8a38f41a64f922d91614fe9a682ae2e6 178 Gene3D G3DSA:1.20.120.450 14 172 4.1E-27 T 26-04-2016 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase RGE_RS21180 8a38f41a64f922d91614fe9a682ae2e6 178 Pfam PF05163 DinB family 15 172 2.1E-23 T 26-04-2016 IPR007837 DNA damage-inducible protein DinB RGE_RS21180 8a38f41a64f922d91614fe9a682ae2e6 178 PANTHER PTHR37302 11 178 7.2E-13 T 26-04-2016 RGE_RS21180 8a38f41a64f922d91614fe9a682ae2e6 178 SUPERFAMILY SSF109854 15 156 1.98E-30 T 26-04-2016 RGE_RS03485 42e95fa8a942878517d6a5636c1a601a 470 PANTHER PTHR30182 1 461 1.1E-258 T 26-04-2016 RGE_RS03485 42e95fa8a942878517d6a5636c1a601a 470 Pfam PF03313 Serine dehydratase alpha chain 184 447 1.2E-95 T 26-04-2016 IPR005130 Serine dehydratase-like, alpha subunit RGE_RS03485 42e95fa8a942878517d6a5636c1a601a 470 Gene3D G3DSA:3.30.1330.90 10 154 1.5E-45 T 26-04-2016 IPR029009 Allosteric substrate binding domain RGE_RS03485 42e95fa8a942878517d6a5636c1a601a 470 Pfam PF03315 Serine dehydratase beta chain 3 153 4.3E-49 T 26-04-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 RGE_RS03485 42e95fa8a942878517d6a5636c1a601a 470 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 450 1.4E-206 T 26-04-2016 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 RGE_RS03485 42e95fa8a942878517d6a5636c1a601a 470 SUPERFAMILY SSF143548 16 153 3.14E-38 T 26-04-2016 IPR029009 Allosteric substrate binding domain RGE_RS03485 42e95fa8a942878517d6a5636c1a601a 470 PANTHER PTHR30182:SF5 1 461 1.1E-258 T 26-04-2016 RGE_RS12445 7143e905817604574927a7378daf04ac 766 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 165 7.7E-15 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS12445 7143e905817604574927a7378daf04ac 766 Gene3D G3DSA:2.170.130.10 37 174 1.9E-28 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS12445 7143e905817604574927a7378daf04ac 766 PANTHER PTHR32552 12 446 3.1E-69 T 26-04-2016 RGE_RS12445 7143e905817604574927a7378daf04ac 766 PANTHER PTHR32552:SF33 484 766 3.1E-69 T 26-04-2016 RGE_RS12445 7143e905817604574927a7378daf04ac 766 Pfam PF00593 TonB dependent receptor 497 765 1.5E-20 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS12445 7143e905817604574927a7378daf04ac 766 SUPERFAMILY SSF56935 488 766 4.45E-97 T 26-04-2016 RGE_RS12445 7143e905817604574927a7378daf04ac 766 SUPERFAMILY SSF56935 37 456 4.45E-97 T 26-04-2016 RGE_RS12445 7143e905817604574927a7378daf04ac 766 PANTHER PTHR32552 484 766 3.1E-69 T 26-04-2016 RGE_RS12445 7143e905817604574927a7378daf04ac 766 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 51 - T 26-04-2016 IPR010916 TonB box, conserved site RGE_RS12445 7143e905817604574927a7378daf04ac 766 PANTHER PTHR32552:SF33 12 446 3.1E-69 T 26-04-2016 RGE_RS12445 7143e905817604574927a7378daf04ac 766 Gene3D G3DSA:2.40.170.20 175 451 2.5E-67 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS12445 7143e905817604574927a7378daf04ac 766 Gene3D G3DSA:2.40.170.20 487 766 2.5E-67 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 Gene3D G3DSA:1.10.10.10 253 314 2.7E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 SUPERFAMILY SSF88659 219 315 7.66E-24 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 37 322 9.8E-134 T 26-04-2016 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 2 322 36.239 T 26-04-2016 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 Gene3D G3DSA:1.10.10.10 157 211 9.5E-8 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 Pfam PF04545 Sigma-70, region 4 257 308 2.2E-15 T 26-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 281 307 - T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 Pfam PF00140 Sigma-70 factor, region 1.2 47 79 1.4E-9 T 26-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 SUPERFAMILY SSF88659 157 235 6.54E-11 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 PRINTS PR00046 Major sigma-70 factor signature 132 140 9.5E-25 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 PRINTS PR00046 Major sigma-70 factor signature 281 296 9.5E-25 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 PRINTS PR00046 Major sigma-70 factor signature 260 272 9.5E-25 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 PRINTS PR00046 Major sigma-70 factor signature 108 121 9.5E-25 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 PRINTS PR00046 Major sigma-70 factor signature 296 307 9.5E-25 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 SUPERFAMILY SSF88946 46 153 6.02E-42 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 PANTHER PTHR30603 48 317 2.0E-96 T 26-04-2016 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 Pfam PF04539 Sigma-70 region 3 164 240 1.2E-12 T 26-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 80 311 4.4E-32 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 Pfam PF04542 Sigma-70 region 2 84 153 1.9E-17 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 Gene3D G3DSA:1.10.601.10 41 153 9.7E-52 T 26-04-2016 RGE_RS16225 787b1cbcda922cb2a2c51020441bb399 322 PANTHER PTHR30603:SF15 48 317 2.0E-96 T 26-04-2016 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 423 4.0E-164 T 26-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 110 9.5E-32 T 26-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 Gene3D G3DSA:1.10.287.40 1 107 1.3E-25 T 26-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 SUPERFAMILY SSF46589 1 115 1.2E-28 T 26-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 PIRSF PIRSF001529 1 430 2.2E-179 T 26-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 Gene3D G3DSA:3.30.930.10 108 427 1.4E-143 T 26-04-2016 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 SUPERFAMILY SSF55681 119 424 9.95E-102 T 26-04-2016 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 227 406 5.2E-35 T 26-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 428 40.718 T 26-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 PANTHER PTHR11778 1 429 2.2E-211 T 26-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 PRINTS PR00981 Seryl-tRNA synthetase signature 340 356 1.8E-33 T 26-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 PRINTS PR00981 Seryl-tRNA synthetase signature 271 283 1.8E-33 T 26-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 PRINTS PR00981 Seryl-tRNA synthetase signature 358 374 1.8E-33 T 26-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 PRINTS PR00981 Seryl-tRNA synthetase signature 323 336 1.8E-33 T 26-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RGE_RS17225 ae748a8f00f710f2ee592759cc8d2e24 430 PRINTS PR00981 Seryl-tRNA synthetase signature 283 296 1.8E-33 T 26-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RGE_RS01175 9771b0271bd509e64b69a269a17c582b 389 SUPERFAMILY SSF53383 2 386 2.75E-102 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS01175 9771b0271bd509e64b69a269a17c582b 389 Pfam PF00155 Aminotransferase class I and II 43 377 6.8E-27 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS01175 9771b0271bd509e64b69a269a17c582b 389 PANTHER PTHR11751 12 387 2.4E-122 T 26-04-2016 RGE_RS01175 9771b0271bd509e64b69a269a17c582b 389 Gene3D G3DSA:3.40.640.10 56 269 2.0E-74 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS01175 9771b0271bd509e64b69a269a17c582b 389 PANTHER PTHR11751:SF294 12 387 2.4E-122 T 26-04-2016 RGE_RS01175 9771b0271bd509e64b69a269a17c582b 389 Gene3D G3DSA:3.90.1150.10 270 386 1.6E-7 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS13035 fee8bd54bd073bc3ce62d2f65eba1df1 923 Pfam PF07715 TonB-dependent Receptor Plug Domain 58 176 8.9E-22 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS13035 fee8bd54bd073bc3ce62d2f65eba1df1 923 PANTHER PTHR30069 27 878 1.6E-87 T 26-04-2016 RGE_RS13035 fee8bd54bd073bc3ce62d2f65eba1df1 923 Pfam PF00593 TonB dependent receptor 592 921 4.0E-32 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS13035 fee8bd54bd073bc3ce62d2f65eba1df1 923 Gene3D G3DSA:2.170.130.10 57 178 1.7E-32 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS13035 fee8bd54bd073bc3ce62d2f65eba1df1 923 PANTHER PTHR30069:SF7 27 878 1.6E-87 T 26-04-2016 RGE_RS13035 fee8bd54bd073bc3ce62d2f65eba1df1 923 SUPERFAMILY SSF56935 732 921 6.66E-95 T 26-04-2016 RGE_RS13035 fee8bd54bd073bc3ce62d2f65eba1df1 923 SUPERFAMILY SSF56935 405 700 6.66E-95 T 26-04-2016 RGE_RS13035 fee8bd54bd073bc3ce62d2f65eba1df1 923 SUPERFAMILY SSF56935 330 378 6.66E-95 T 26-04-2016 RGE_RS13035 fee8bd54bd073bc3ce62d2f65eba1df1 923 SUPERFAMILY SSF56935 44 244 6.66E-95 T 26-04-2016 RGE_RS13035 fee8bd54bd073bc3ce62d2f65eba1df1 923 Gene3D G3DSA:2.40.170.20 307 921 1.8E-88 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS13035 fee8bd54bd073bc3ce62d2f65eba1df1 923 Gene3D G3DSA:2.40.170.20 179 242 1.8E-88 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS00420 fb9dbe55117ed710907a7c5bae6a4dca 219 Gene3D G3DSA:3.30.1330.60 97 210 4.6E-36 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS00420 fb9dbe55117ed710907a7c5bae6a4dca 219 Pfam PF00691 OmpA family 112 204 5.2E-22 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS00420 fb9dbe55117ed710907a7c5bae6a4dca 219 SUPERFAMILY SSF103088 99 210 7.72E-34 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS00420 fb9dbe55117ed710907a7c5bae6a4dca 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 193 213 2.2E-11 T 26-04-2016 RGE_RS00420 fb9dbe55117ed710907a7c5bae6a4dca 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 173 192 2.2E-11 T 26-04-2016 RGE_RS00420 fb9dbe55117ed710907a7c5bae6a4dca 219 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 155 172 2.2E-11 T 26-04-2016 RGE_RS00420 fb9dbe55117ed710907a7c5bae6a4dca 219 Pfam PF13488 Glycine zipper 35 79 5.7E-9 T 26-04-2016 RGE_RS00420 fb9dbe55117ed710907a7c5bae6a4dca 219 PANTHER PTHR30128 74 215 3.1E-40 T 26-04-2016 RGE_RS12280 19e95d623ded32c67fff76a456e638c4 93 Pfam PF08666 SAF domain 15 89 2.5E-5 T 26-04-2016 IPR013974 SAF domain RGE_RS12280 19e95d623ded32c67fff76a456e638c4 93 SMART SM00858 12 89 3.8E-6 T 26-04-2016 IPR013974 SAF domain RGE_RS07760 6eb0d3c5a43976cb7b5a9ee093a7ff5e 345 SUPERFAMILY SSF53850 78 128 3.75E-7 T 26-04-2016 RGE_RS07760 6eb0d3c5a43976cb7b5a9ee093a7ff5e 345 SUPERFAMILY SSF53850 161 260 3.75E-7 T 26-04-2016 RGE_RS07760 6eb0d3c5a43976cb7b5a9ee093a7ff5e 345 Gene3D G3DSA:3.40.190.10 78 119 4.6E-4 T 26-04-2016 RGE_RS07760 6eb0d3c5a43976cb7b5a9ee093a7ff5e 345 Gene3D G3DSA:3.40.190.10 285 300 4.6E-4 T 26-04-2016 RGE_RS07760 6eb0d3c5a43976cb7b5a9ee093a7ff5e 345 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 47 279 9.3E-58 T 26-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RGE_RS07760 6eb0d3c5a43976cb7b5a9ee093a7ff5e 345 PANTHER PTHR33376 1 342 3.0E-67 T 26-04-2016 RGE_RS07760 6eb0d3c5a43976cb7b5a9ee093a7ff5e 345 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 40 325 5.7E-73 T 26-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RGE_RS07760 6eb0d3c5a43976cb7b5a9ee093a7ff5e 345 PIRSF PIRSF006470 1 343 1.3E-81 T 26-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RGE_RS10845 61b3f57d320e5384929ab0554d4525ea 113 Gene3D G3DSA:2.60.40.420 12 111 2.0E-8 T 26-04-2016 IPR008972 Cupredoxin RGE_RS10845 61b3f57d320e5384929ab0554d4525ea 113 SUPERFAMILY SSF49503 10 111 3.39E-14 T 26-04-2016 IPR008972 Cupredoxin RGE_RS10845 61b3f57d320e5384929ab0554d4525ea 113 Pfam PF13473 Cupredoxin-like domain 9 109 1.2E-24 T 26-04-2016 IPR028096 EfeO-type cupredoxin-like domain RGE_RS18410 36a9a6a2e2578472878f8202539b9918 282 Pfam PF00691 OmpA family 171 266 9.1E-19 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS18410 36a9a6a2e2578472878f8202539b9918 282 PANTHER PTHR30128 141 272 6.8E-39 T 26-04-2016 RGE_RS18410 36a9a6a2e2578472878f8202539b9918 282 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 235 254 6.0E-5 T 26-04-2016 RGE_RS18410 36a9a6a2e2578472878f8202539b9918 282 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 255 275 6.0E-5 T 26-04-2016 RGE_RS18410 36a9a6a2e2578472878f8202539b9918 282 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 217 234 6.0E-5 T 26-04-2016 RGE_RS18410 36a9a6a2e2578472878f8202539b9918 282 Gene3D G3DSA:3.30.1330.60 163 272 1.3E-35 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS18410 36a9a6a2e2578472878f8202539b9918 282 Pfam PF14346 Domain of unknown function (DUF4398) 15 113 4.1E-9 T 26-04-2016 IPR025511 Domain of unknown function DUF4398 RGE_RS18410 36a9a6a2e2578472878f8202539b9918 282 SUPERFAMILY SSF103088 162 272 7.46E-34 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS18410 36a9a6a2e2578472878f8202539b9918 282 PRINTS PR01021 OMPA domain signature 217 233 6.6E-10 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS18410 36a9a6a2e2578472878f8202539b9918 282 PRINTS PR01021 OMPA domain signature 202 217 6.6E-10 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS18410 36a9a6a2e2578472878f8202539b9918 282 PRINTS PR01021 OMPA domain signature 172 194 6.6E-10 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 SUPERFAMILY SSF52540 30 352 1.53E-40 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 Pfam PF08494 DEAD/H associated 585 771 2.8E-50 T 26-04-2016 IPR013701 DEAD/H associated GO:0005524|GO:0016818 RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 SMART SM00490 260 341 1.2E-4 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 Gene3D G3DSA:3.40.50.300 11 196 7.0E-33 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 PANTHER PTHR24031 241 358 5.0E-42 T 26-04-2016 RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 PANTHER PTHR24031 786 803 5.0E-42 T 26-04-2016 RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 PANTHER PTHR24031 21 209 5.0E-42 T 26-04-2016 RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 Gene3D G3DSA:3.40.50.300 234 361 4.9E-20 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 PANTHER PTHR24031:SF122 241 358 5.0E-42 T 26-04-2016 RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 PANTHER PTHR24031:SF122 786 803 5.0E-42 T 26-04-2016 RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 PANTHER PTHR24031:SF122 21 209 5.0E-42 T 26-04-2016 RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 Pfam PF00270 DEAD/DEAH box helicase 23 185 5.4E-20 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 TIGRFAM TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated 10 797 0.0 T 26-04-2016 IPR026362 DEXH box helicase, DNA ligase-associated RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 SMART SM00487 17 220 6.5E-23 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 Pfam PF00271 Helicase conserved C-terminal domain 241 342 7.6E-9 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS18485 a9617e72c2c108a57638a1d6bc81fdfe 815 PIRSF PIRSF037307 7 802 6.4E-140 T 26-04-2016 IPR017170 Lhr-like ATP-dependent RNA helicase, predicted GO:0005524|GO:0016818 RGE_RS19825 442ad88b42da0dfa80f3ded18e224d94 318 PANTHER PTHR11935 58 242 6.7E-14 T 26-04-2016 RGE_RS19825 442ad88b42da0dfa80f3ded18e224d94 318 SUPERFAMILY SSF56281 5 294 1.18E-51 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS19825 442ad88b42da0dfa80f3ded18e224d94 318 SMART SM00849 56 241 5.7E-10 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS19825 442ad88b42da0dfa80f3ded18e224d94 318 Pfam PF00753 Metallo-beta-lactamase superfamily 53 241 1.9E-14 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS19825 442ad88b42da0dfa80f3ded18e224d94 318 Gene3D G3DSA:3.60.15.10 29 264 1.6E-42 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS22245 a316dccaa6c2ff1fbb15f7361bf9d132 350 SUPERFAMILY SSF51556 10 330 2.54E-61 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS22245 a316dccaa6c2ff1fbb15f7361bf9d132 350 Gene3D G3DSA:3.20.20.140 9 336 2.0E-81 T 26-04-2016 RGE_RS22245 a316dccaa6c2ff1fbb15f7361bf9d132 350 PANTHER PTHR11409:SF43 12 332 3.9E-73 T 26-04-2016 RGE_RS22245 a316dccaa6c2ff1fbb15f7361bf9d132 350 Pfam PF00962 Adenosine/AMP deaminase 12 331 2.6E-55 T 26-04-2016 IPR001365 Adenosine/AMP deaminase domain GO:0019239 RGE_RS22245 a316dccaa6c2ff1fbb15f7361bf9d132 350 PANTHER PTHR11409 12 332 3.9E-73 T 26-04-2016 RGE_RS11470 93328f0c12433a6012225ab5a7b73e66 233 Pfam PF00881 Nitroreductase family 15 207 8.1E-40 T 26-04-2016 IPR029479 Nitroreductase RGE_RS11470 93328f0c12433a6012225ab5a7b73e66 233 Gene3D G3DSA:3.40.109.10 10 89 4.2E-49 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS11470 93328f0c12433a6012225ab5a7b73e66 233 Gene3D G3DSA:3.40.109.10 133 231 4.2E-49 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS11470 93328f0c12433a6012225ab5a7b73e66 233 PANTHER PTHR23026:SF90 11 232 6.4E-40 T 26-04-2016 RGE_RS11470 93328f0c12433a6012225ab5a7b73e66 233 SUPERFAMILY SSF55469 11 230 1.96E-52 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS11470 93328f0c12433a6012225ab5a7b73e66 233 PANTHER PTHR23026 11 232 6.4E-40 T 26-04-2016 RGE_RS21175 df0ef5bb4ea45b7b939c781c40241173 260 SUPERFAMILY SSF52096 5 260 2.2E-69 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS21175 df0ef5bb4ea45b7b939c781c40241173 260 PANTHER PTHR11941 4 259 5.1E-90 T 26-04-2016 RGE_RS21175 df0ef5bb4ea45b7b939c781c40241173 260 PANTHER PTHR11941:SF86 4 259 5.1E-90 T 26-04-2016 RGE_RS21175 df0ef5bb4ea45b7b939c781c40241173 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 259 3.3E-49 T 26-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RGE_RS21175 df0ef5bb4ea45b7b939c781c40241173 260 Gene3D G3DSA:3.90.226.10 9 202 3.8E-56 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS21175 df0ef5bb4ea45b7b939c781c40241173 260 Gene3D G3DSA:1.10.12.10 205 260 2.2E-12 T 26-04-2016 IPR014748 Crontonase, C-terminal RGE_RS16030 e72e9b9bc96a2d362be602a970129d8d 161 PANTHER PTHR12418 22 160 7.1E-28 T 26-04-2016 RGE_RS16030 e72e9b9bc96a2d362be602a970129d8d 161 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 32 158 8.2E-13 T 26-04-2016 IPR003736 Phenylacetic acid degradation-related domain RGE_RS16030 e72e9b9bc96a2d362be602a970129d8d 161 Gene3D G3DSA:3.10.129.10 18 161 6.5E-33 T 26-04-2016 IPR029069 HotDog domain RGE_RS16030 e72e9b9bc96a2d362be602a970129d8d 161 SUPERFAMILY SSF54637 19 160 5.91E-23 T 26-04-2016 IPR029069 HotDog domain RGE_RS16030 e72e9b9bc96a2d362be602a970129d8d 161 PANTHER PTHR12418:SF35 22 160 7.1E-28 T 26-04-2016 RGE_RS16030 e72e9b9bc96a2d362be602a970129d8d 161 Pfam PF03061 Thioesterase superfamily 64 151 1.6E-9 T 26-04-2016 IPR006683 Thioesterase domain RGE_RS21385 86d7e483094adddae116c90c7b189db7 399 Gene3D G3DSA:1.20.1250.20 14 196 7.5E-18 T 26-04-2016 RGE_RS21385 86d7e483094adddae116c90c7b189db7 399 Pfam PF07690 Major Facilitator Superfamily 22 354 1.1E-23 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS21385 86d7e483094adddae116c90c7b189db7 399 SUPERFAMILY SSF103473 11 393 7.59E-38 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS21385 86d7e483094adddae116c90c7b189db7 399 Gene3D G3DSA:1.20.1250.20 215 379 5.1E-6 T 26-04-2016 RGE_RS15910 100ac761db7b35b680e2f82d97763006 372 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 31 372 5.6E-111 T 26-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15910 100ac761db7b35b680e2f82d97763006 372 SMART SM00729 40 256 3.1E-9 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS15910 100ac761db7b35b680e2f82d97763006 372 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 46 57 - T 26-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15910 100ac761db7b35b680e2f82d97763006 372 SUPERFAMILY SSF102114 31 319 8.76E-72 T 26-04-2016 RGE_RS15910 100ac761db7b35b680e2f82d97763006 372 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 31 372 39.282 T 26-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15910 100ac761db7b35b680e2f82d97763006 372 Pfam PF04055 Radical SAM superfamily 44 213 1.4E-28 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS15910 100ac761db7b35b680e2f82d97763006 372 Pfam PF13353 4Fe-4S single cluster domain 48 143 5.6E-7 T 26-04-2016 RGE_RS15910 100ac761db7b35b680e2f82d97763006 372 PANTHER PTHR22960 33 322 4.7E-110 T 26-04-2016 RGE_RS15910 100ac761db7b35b680e2f82d97763006 372 Pfam PF06463 Molybdenum Cofactor Synthesis C 224 350 3.1E-35 T 26-04-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15910 100ac761db7b35b680e2f82d97763006 372 Gene3D G3DSA:3.20.20.70 31 335 1.1E-76 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS16600 2b8bdc2e97e9b0c3e35feea0b5d595b7 233 PIRSF PIRSF039137 1 233 6.5E-103 T 26-04-2016 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 RGE_RS16600 2b8bdc2e97e9b0c3e35feea0b5d595b7 233 Gene3D G3DSA:3.40.50.300 1 230 2.0E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16600 2b8bdc2e97e9b0c3e35feea0b5d595b7 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS16600 2b8bdc2e97e9b0c3e35feea0b5d595b7 233 PANTHER PTHR24220 3 233 6.7E-120 T 26-04-2016 RGE_RS16600 2b8bdc2e97e9b0c3e35feea0b5d595b7 233 SUPERFAMILY SSF52540 2 231 3.99E-58 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16600 2b8bdc2e97e9b0c3e35feea0b5d595b7 233 SMART SM00382 26 227 4.4E-5 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS16600 2b8bdc2e97e9b0c3e35feea0b5d595b7 233 Pfam PF00005 ABC transporter 18 161 1.2E-27 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS16600 2b8bdc2e97e9b0c3e35feea0b5d595b7 233 PANTHER PTHR24220:SF568 3 233 6.7E-120 T 26-04-2016 RGE_RS22760 1a9378e4d7214973d62c24d758575f11 173 Pfam PF04093 rod shape-determining protein MreD 17 152 7.1E-15 T 26-04-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 RGE_RS22760 1a9378e4d7214973d62c24d758575f11 173 PIRSF PIRSF018472 7 165 8.1E-42 T 26-04-2016 IPR026034 Cell shape-determining protein MreD, proteobacterial type RGE_RS22760 1a9378e4d7214973d62c24d758575f11 173 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 15 158 1.4E-26 T 26-04-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 RGE_RS22760 1a9378e4d7214973d62c24d758575f11 173 PANTHER PTHR37484 8 167 7.3E-21 T 26-04-2016 RGE_RS12995 ab8234acf90b6289d9e4811f6fcf7244 256 Pfam PF08220 DeoR-like helix-turn-helix domain 10 60 7.3E-9 T 26-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RGE_RS12995 ab8234acf90b6289d9e4811f6fcf7244 256 SUPERFAMILY SSF100950 81 235 3.35E-24 T 26-04-2016 RGE_RS12995 ab8234acf90b6289d9e4811f6fcf7244 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 28 42 2.0E-5 T 26-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RGE_RS12995 ab8234acf90b6289d9e4811f6fcf7244 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 42 60 2.0E-5 T 26-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RGE_RS12995 ab8234acf90b6289d9e4811f6fcf7244 256 Gene3D G3DSA:1.10.10.10 9 51 1.5E-5 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS12995 ab8234acf90b6289d9e4811f6fcf7244 256 SMART SM01134 75 236 5.4E-53 T 26-04-2016 RGE_RS12995 ab8234acf90b6289d9e4811f6fcf7244 256 PANTHER PTHR30363:SF1 6 244 1.5E-49 T 26-04-2016 RGE_RS12995 ab8234acf90b6289d9e4811f6fcf7244 256 Pfam PF00455 DeoR C terminal sensor domain 80 234 6.5E-43 T 26-04-2016 IPR014036 DeoR C-terminal sensor domain RGE_RS12995 ab8234acf90b6289d9e4811f6fcf7244 256 SMART SM00420 10 62 1.5E-5 T 26-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RGE_RS12995 ab8234acf90b6289d9e4811f6fcf7244 256 SUPERFAMILY SSF46785 9 59 1.78E-6 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS12995 ab8234acf90b6289d9e4811f6fcf7244 256 PANTHER PTHR30363 6 244 1.5E-49 T 26-04-2016 RGE_RS12995 ab8234acf90b6289d9e4811f6fcf7244 256 Gene3D G3DSA:3.40.50.1360 81 217 1.5E-8 T 26-04-2016 RGE_RS16550 0d7d343eb9d08627adb930ef71b3885f 331 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 10 303 2.3E-10 T 26-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RGE_RS16550 0d7d343eb9d08627adb930ef71b3885f 331 PANTHER PTHR10996 1 304 1.6E-42 T 26-04-2016 RGE_RS16550 0d7d343eb9d08627adb930ef71b3885f 331 SUPERFAMILY SSF52283 8 126 3.61E-15 T 26-04-2016 RGE_RS16550 0d7d343eb9d08627adb930ef71b3885f 331 Gene3D G3DSA:3.40.50.720 8 113 1.1E-19 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS16550 0d7d343eb9d08627adb930ef71b3885f 331 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 130 281 1.2E-26 T 26-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RGE_RS16550 0d7d343eb9d08627adb930ef71b3885f 331 PANTHER PTHR10996:SF20 1 304 1.6E-42 T 26-04-2016 RGE_RS16550 0d7d343eb9d08627adb930ef71b3885f 331 SUPERFAMILY SSF51735 108 282 2.91E-29 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS16550 0d7d343eb9d08627adb930ef71b3885f 331 Gene3D G3DSA:3.40.50.720 114 282 1.5E-27 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 SMART SM00283 392 639 1.3E-82 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 PANTHER PTHR32089 374 640 2.6E-113 T 26-04-2016 RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 PANTHER PTHR32089:SF63 374 640 2.6E-113 T 26-04-2016 RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 413 442 4.3E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 519 548 4.3E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 312 332 4.3E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 490 517 4.3E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 567 596 4.3E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 453 638 1.5E-51 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 Pfam PF00672 HAMP domain 317 387 3.4E-7 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 SUPERFAMILY SSF58104 366 640 1.18E-65 T 26-04-2016 RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 Gene3D G3DSA:1.10.287.950 407 611 3.3E-55 T 26-04-2016 RGE_RS11135 4f6f5846040f4f181583f031ab6412f0 640 Pfam PF08376 Nitrate and nitrite sensing 59 291 2.8E-11 T 26-04-2016 IPR013587 Nitrate/nitrite sensing protein RGE_RS19110 576846575682b9ebe83ab74f3f66509f 547 Gene3D G3DSA:3.40.720.10 242 529 7.7E-11 T 26-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RGE_RS19110 576846575682b9ebe83ab74f3f66509f 547 PANTHER PTHR30443:SF0 8 544 1.1E-200 T 26-04-2016 RGE_RS19110 576846575682b9ebe83ab74f3f66509f 547 PANTHER PTHR30443 8 544 1.1E-200 T 26-04-2016 RGE_RS19110 576846575682b9ebe83ab74f3f66509f 547 Pfam PF08019 Domain of unknown function (DUF1705) 62 210 2.4E-46 T 26-04-2016 IPR012549 Domain of unknown function DUF1705 GO:0016021 RGE_RS19110 576846575682b9ebe83ab74f3f66509f 547 Pfam PF00884 Sulfatase 242 526 4.8E-51 T 26-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RGE_RS19110 576846575682b9ebe83ab74f3f66509f 547 SUPERFAMILY SSF53649 239 529 2.24E-18 T 26-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RGE_RS13130 c7bae4ee839c4b1ffb8a3ec19e02968b 347 Pfam PF13416 Bacterial extracellular solute-binding protein 43 309 1.8E-24 T 26-04-2016 RGE_RS13130 c7bae4ee839c4b1ffb8a3ec19e02968b 347 Gene3D G3DSA:3.40.190.10 8 128 7.1E-25 T 26-04-2016 RGE_RS13130 c7bae4ee839c4b1ffb8a3ec19e02968b 347 Gene3D G3DSA:3.40.190.10 278 313 7.1E-25 T 26-04-2016 RGE_RS13130 c7bae4ee839c4b1ffb8a3ec19e02968b 347 SUPERFAMILY SSF53850 24 341 1.84E-75 T 26-04-2016 RGE_RS13130 c7bae4ee839c4b1ffb8a3ec19e02968b 347 PIRSF PIRSF002825 3 347 3.4E-80 T 26-04-2016 IPR026045 Ferric binding protein RGE_RS13130 c7bae4ee839c4b1ffb8a3ec19e02968b 347 PANTHER PTHR30006 13 344 4.0E-121 T 26-04-2016 RGE_RS13130 c7bae4ee839c4b1ffb8a3ec19e02968b 347 PANTHER PTHR30006:SF4 13 344 4.0E-121 T 26-04-2016 RGE_RS13130 c7bae4ee839c4b1ffb8a3ec19e02968b 347 Gene3D G3DSA:3.40.190.10 132 277 2.8E-48 T 26-04-2016 RGE_RS03670 c6bd980404c1c7f7db32ac97db857805 199 PANTHER PTHR30086 1 199 5.6E-78 T 26-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RGE_RS03670 c6bd980404c1c7f7db32ac97db857805 199 Pfam PF01810 LysE type translocator 14 198 2.0E-34 T 26-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RGE_RS03670 c6bd980404c1c7f7db32ac97db857805 199 PANTHER PTHR30086:SF0 1 199 5.6E-78 T 26-04-2016 RGE_RS14705 ca0f6878763ad32aed6f4a986f845682 223 Gene3D G3DSA:1.20.910.10 3 203 3.4E-13 T 26-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RGE_RS14705 ca0f6878763ad32aed6f4a986f845682 223 Pfam PF14518 Iron-containing redox enzyme 39 206 7.0E-22 T 26-04-2016 IPR028201 PqqC-like protein RGE_RS14705 ca0f6878763ad32aed6f4a986f845682 223 SMART SM01236 73 170 1.7E-5 T 26-04-2016 RGE_RS14705 ca0f6878763ad32aed6f4a986f845682 223 SUPERFAMILY SSF48613 1 214 2.5E-50 T 26-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RGE_RS18570 f4f039289f8047fec26a4c7967959c70 88 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 2.1E-21 T 26-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 RGE_RS18570 f4f039289f8047fec26a4c7967959c70 88 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.3E-29 T 26-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RGE_RS18570 f4f039289f8047fec26a4c7967959c70 88 SUPERFAMILY SSF50249 1 71 1.54E-24 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS18570 f4f039289f8047fec26a4c7967959c70 88 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 74 25.75 T 26-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RGE_RS18570 f4f039289f8047fec26a4c7967959c70 88 PANTHER PTHR33370 1 83 3.5E-37 T 26-04-2016 RGE_RS18570 f4f039289f8047fec26a4c7967959c70 88 Gene3D G3DSA:2.40.50.140 1 71 9.0E-34 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS04160 1b88770c02428c38cbfddbc1da4f85a4 84 SUPERFAMILY SSF47027 4 83 6.28E-29 T 26-04-2016 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 RGE_RS04160 1b88770c02428c38cbfddbc1da4f85a4 84 PRINTS PR00689 Acyl-coA-binding protein signature 66 83 2.6E-21 T 26-04-2016 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 RGE_RS04160 1b88770c02428c38cbfddbc1da4f85a4 84 PRINTS PR00689 Acyl-coA-binding protein signature 5 20 2.6E-21 T 26-04-2016 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 RGE_RS04160 1b88770c02428c38cbfddbc1da4f85a4 84 PRINTS PR00689 Acyl-coA-binding protein signature 45 60 2.6E-21 T 26-04-2016 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 RGE_RS04160 1b88770c02428c38cbfddbc1da4f85a4 84 PRINTS PR00689 Acyl-coA-binding protein signature 22 40 2.6E-21 T 26-04-2016 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 RGE_RS04160 1b88770c02428c38cbfddbc1da4f85a4 84 Pfam PF00887 Acyl CoA binding protein 6 83 9.3E-28 T 26-04-2016 IPR000582 Acyl-CoA-binding protein, ACBP GO:0000062 RGE_RS04160 1b88770c02428c38cbfddbc1da4f85a4 84 Gene3D G3DSA:1.20.80.10 3 83 2.3E-31 T 26-04-2016 IPR014352 FERM/acyl-CoA-binding protein, 3-helical bundle RGE_RS04160 1b88770c02428c38cbfddbc1da4f85a4 84 PANTHER PTHR23310 1 84 3.1E-36 T 26-04-2016 RGE_RS02020 ce17c4722dfd09c590e74f8295d703f8 367 SUPERFAMILY SSF52540 5 264 1.4E-33 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02020 ce17c4722dfd09c590e74f8295d703f8 367 TIGRFAM TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily 1 269 3.8E-123 T 26-04-2016 IPR017466 ATPase, secretion system, PEP-CTERM, predicted RGE_RS02020 ce17c4722dfd09c590e74f8295d703f8 367 Pfam PF13401 AAA domain 42 171 1.6E-19 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS02020 ce17c4722dfd09c590e74f8295d703f8 367 PANTHER PTHR35894:SF1 2 296 1.3E-80 T 26-04-2016 RGE_RS02020 ce17c4722dfd09c590e74f8295d703f8 367 Gene3D G3DSA:3.40.50.300 32 167 4.7E-11 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02020 ce17c4722dfd09c590e74f8295d703f8 367 SMART SM00382 42 207 0.0039 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS02020 ce17c4722dfd09c590e74f8295d703f8 367 PRINTS PR00364 Disease resistance protein signature 45 60 5.9E-5 T 26-04-2016 RGE_RS02020 ce17c4722dfd09c590e74f8295d703f8 367 PRINTS PR00364 Disease resistance protein signature 335 351 5.9E-5 T 26-04-2016 RGE_RS02020 ce17c4722dfd09c590e74f8295d703f8 367 PRINTS PR00364 Disease resistance protein signature 119 133 5.9E-5 T 26-04-2016 RGE_RS02020 ce17c4722dfd09c590e74f8295d703f8 367 PRINTS PR00364 Disease resistance protein signature 228 242 5.9E-5 T 26-04-2016 RGE_RS02020 ce17c4722dfd09c590e74f8295d703f8 367 PANTHER PTHR35894 2 296 1.3E-80 T 26-04-2016 RGE_RS02020 ce17c4722dfd09c590e74f8295d703f8 367 Gene3D G3DSA:3.40.50.300 281 342 7.7E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16300 f833892357ccd9981fa767b0279ba6c8 416 Gene3D G3DSA:3.40.50.1980 241 366 9.3E-6 T 26-04-2016 RGE_RS16300 f833892357ccd9981fa767b0279ba6c8 416 PANTHER PTHR39429:SF1 13 414 2.8E-95 T 26-04-2016 RGE_RS16300 f833892357ccd9981fa767b0279ba6c8 416 SUPERFAMILY SSF53807 14 411 1.64E-78 T 26-04-2016 RGE_RS16300 f833892357ccd9981fa767b0279ba6c8 416 PIRSF PIRSF000162 2 416 1.3E-183 T 26-04-2016 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16300 f833892357ccd9981fa767b0279ba6c8 416 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 21 404 2.4E-33 T 26-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RGE_RS16300 f833892357ccd9981fa767b0279ba6c8 416 PANTHER PTHR39429 13 414 2.8E-95 T 26-04-2016 RGE_RS16300 f833892357ccd9981fa767b0279ba6c8 416 Gene3D G3DSA:3.40.50.1980 21 162 2.7E-8 T 26-04-2016 RGE_RS16300 f833892357ccd9981fa767b0279ba6c8 416 Hamap MF_00352 Light-independent protochlorophyllide reductase subunit N [bchN]. 7 415 53.953 T 26-04-2016 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16300 f833892357ccd9981fa767b0279ba6c8 416 TIGRFAM TIGR01279 DPOR_bchN: light-independent protochlorophyllide reductase, N subunit 12 415 2.4E-181 T 26-04-2016 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS20440 d7f6f5b6c3cae2059eb04c1d91dbc10c 203 PANTHER PTHR12231:SF138 41 165 2.9E-18 T 26-04-2016 RGE_RS20440 d7f6f5b6c3cae2059eb04c1d91dbc10c 203 SUPERFAMILY SSF52821 28 134 1.7E-28 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS20440 d7f6f5b6c3cae2059eb04c1d91dbc10c 203 PANTHER PTHR12231 41 165 2.9E-18 T 26-04-2016 RGE_RS20440 d7f6f5b6c3cae2059eb04c1d91dbc10c 203 SMART SM00450 34 130 4.7E-20 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS20440 d7f6f5b6c3cae2059eb04c1d91dbc10c 203 Pfam PF00581 Rhodanese-like domain 36 126 8.0E-13 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS20440 d7f6f5b6c3cae2059eb04c1d91dbc10c 203 Gene3D G3DSA:3.40.250.10 15 134 3.5E-26 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS07030 c730ce6238587b137437ea4915bc6277 503 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 503 188.2 T 26-04-2016 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 RGE_RS07030 c730ce6238587b137437ea4915bc6277 503 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 9 489 4.5E-145 T 26-04-2016 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 RGE_RS07030 c730ce6238587b137437ea4915bc6277 503 SUPERFAMILY SSF55931 9 489 3.66E-171 T 26-04-2016 RGE_RS07030 c730ce6238587b137437ea4915bc6277 503 PANTHER PTHR38761 9 501 1.2E-180 T 26-04-2016 RGE_RS07030 c730ce6238587b137437ea4915bc6277 503 Pfam PF04262 Glutamate-cysteine ligase 10 355 2.4E-136 T 26-04-2016 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 Gene3D G3DSA:3.30.450.20 1 110 1.4E-7 T 26-04-2016 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 Pfam PF00072 Response regulator receiver domain 376 485 5.9E-18 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 SMART SM00388 130 196 1.2E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 SMART SM00448 374 487 1.7E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 Pfam PF00512 His Kinase A (phospho-acceptor) domain 131 194 9.5E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 SMART SM00387 242 355 2.6E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 Gene3D G3DSA:3.30.565.10 199 360 1.7E-44 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 SUPERFAMILY SSF52172 374 490 1.42E-32 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 SUPERFAMILY SSF55874 185 354 9.69E-46 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 242 353 9.2E-28 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 Gene3D G3DSA:3.40.50.2300 374 490 7.4E-29 T 26-04-2016 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 SUPERFAMILY SSF47384 119 195 2.55E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 Pfam PF08448 PAS fold 2 112 6.5E-8 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 PANTHER PTHR24423 1 487 9.6E-122 T 26-04-2016 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 352 6.9E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 PRINTS PR00344 Bacterial sensor protein C-terminal signature 279 293 6.9E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 PRINTS PR00344 Bacterial sensor protein C-terminal signature 297 307 6.9E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 PRINTS PR00344 Bacterial sensor protein C-terminal signature 314 332 6.9E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10050 ef66249a3c612d33d47e2fe6ecd33589 498 Gene3D G3DSA:1.10.287.130 122 192 3.7E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19930 d396f5814a38e50e60e960f618a113cf 322 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 30 322 1.1E-60 T 26-04-2016 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 RGE_RS19930 d396f5814a38e50e60e960f618a113cf 322 Pfam PF01544 CorA-like Mg2+ transporter protein 31 318 2.0E-60 T 26-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RGE_RS19930 d396f5814a38e50e60e960f618a113cf 322 Gene3D G3DSA:1.20.58.340 247 322 8.2E-24 T 26-04-2016 RGE_RS19930 d396f5814a38e50e60e960f618a113cf 322 SUPERFAMILY SSF143865 2 254 1.14E-63 T 26-04-2016 RGE_RS19930 d396f5814a38e50e60e960f618a113cf 322 Gene3D G3DSA:1.20.58.340 132 243 3.5E-34 T 26-04-2016 RGE_RS19930 d396f5814a38e50e60e960f618a113cf 322 PANTHER PTHR21535 8 322 1.0E-51 T 26-04-2016 RGE_RS19930 d396f5814a38e50e60e960f618a113cf 322 Gene3D G3DSA:3.30.460.20 3 131 3.9E-35 T 26-04-2016 RGE_RS19930 d396f5814a38e50e60e960f618a113cf 322 SUPERFAMILY SSF144083 259 319 1.44E-17 T 26-04-2016 RGE_RS09580 a605bcfc4b2f2c17ee5478ca9b568d35 436 PANTHER PTHR15184:SF9 1 436 6.6E-203 T 26-04-2016 IPR032463 ATPase, type III secretion system, FliI GO:0016887|GO:0030257|GO:0044780 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS09580 a605bcfc4b2f2c17ee5478ca9b568d35 436 SUPERFAMILY SSF52540 94 360 9.02E-90 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09580 a605bcfc4b2f2c17ee5478ca9b568d35 436 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 346 355 - T 26-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS09580 a605bcfc4b2f2c17ee5478ca9b568d35 436 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 144 355 2.2E-66 T 26-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS09580 a605bcfc4b2f2c17ee5478ca9b568d35 436 PANTHER PTHR15184 1 436 6.6E-203 T 26-04-2016 RGE_RS09580 a605bcfc4b2f2c17ee5478ca9b568d35 436 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 9 435 2.9E-153 T 26-04-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS09580 a605bcfc4b2f2c17ee5478ca9b568d35 436 Gene3D G3DSA:3.40.50.300 94 356 6.4E-83 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09580 a605bcfc4b2f2c17ee5478ca9b568d35 436 SMART SM00382 156 339 0.0024 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 285 293 - T 26-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 PANTHER PTHR22924:SF20 22 292 1.0E-68 T 26-04-2016 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 SUPERFAMILY SSF63380 21 114 3.4E-26 T 26-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 Gene3D G3DSA:3.10.20.30 234 333 2.5E-25 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 SUPERFAMILY SSF52343 113 241 8.25E-24 T 26-04-2016 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 Gene3D G3DSA:2.40.30.10 21 114 6.2E-32 T 26-04-2016 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 Gene3D G3DSA:3.40.50.80 118 233 5.1E-21 T 26-04-2016 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 PANTHER PTHR22924 22 292 1.0E-68 T 26-04-2016 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 PRINTS PR00409 Phthalate dioxygenase reductase family signature 67 81 1.2E-47 T 26-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 PRINTS PR00409 Phthalate dioxygenase reductase family signature 55 67 1.2E-47 T 26-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 PRINTS PR00409 Phthalate dioxygenase reductase family signature 105 119 1.2E-47 T 26-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 PRINTS PR00409 Phthalate dioxygenase reductase family signature 152 161 1.2E-47 T 26-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 PRINTS PR00409 Phthalate dioxygenase reductase family signature 45 55 1.2E-47 T 26-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 PRINTS PR00409 Phthalate dioxygenase reductase family signature 91 105 1.2E-47 T 26-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 PRINTS PR00409 Phthalate dioxygenase reductase family signature 127 146 1.2E-47 T 26-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 PRINTS PR00409 Phthalate dioxygenase reductase family signature 206 214 1.2E-47 T 26-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 257 326 2.2E-12 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 SUPERFAMILY SSF54292 228 333 4.46E-26 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS05735 927b696c46a045b8e89ac19d164aee92 335 Pfam PF00175 Oxidoreductase NAD-binding domain 128 218 7.2E-5 T 26-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RGE_RS18665 3a2dd71e98a5da8e25d5e96eb8eeba57 702 PANTHER PTHR13325:SF4 119 546 9.2E-46 T 26-04-2016 RGE_RS18665 3a2dd71e98a5da8e25d5e96eb8eeba57 702 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 460 594 1.6E-9 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS18665 3a2dd71e98a5da8e25d5e96eb8eeba57 702 Gene3D G3DSA:2.40.50.100 535 568 3.0E-4 T 26-04-2016 RGE_RS18665 3a2dd71e98a5da8e25d5e96eb8eeba57 702 Gene3D G3DSA:2.40.50.100 460 478 3.0E-4 T 26-04-2016 RGE_RS18665 3a2dd71e98a5da8e25d5e96eb8eeba57 702 PANTHER PTHR13325 119 546 9.2E-46 T 26-04-2016 IPR001193 Membrane-bound transcription factor site-2 protease GO:0004222|GO:0006508|GO:0016020 RGE_RS01610 f05cf034e8776f8943bda3d1d4d51531 223 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 6 214 37.99 T 26-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01610 f05cf034e8776f8943bda3d1d4d51531 223 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 8 211 1.3E-85 T 26-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01610 f05cf034e8776f8943bda3d1d4d51531 223 SUPERFAMILY SSF50447 7 219 3.0E-76 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS01610 f05cf034e8776f8943bda3d1d4d51531 223 Pfam PF00297 Ribosomal protein L3 69 189 2.7E-14 T 26-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01610 f05cf034e8776f8943bda3d1d4d51531 223 Gene3D G3DSA:2.40.30.10 8 37 1.3E-8 T 26-04-2016 RGE_RS01610 f05cf034e8776f8943bda3d1d4d51531 223 Gene3D G3DSA:2.40.30.10 165 219 1.3E-8 T 26-04-2016 RGE_RS01610 f05cf034e8776f8943bda3d1d4d51531 223 PANTHER PTHR11229 1 223 9.8E-109 T 26-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01610 f05cf034e8776f8943bda3d1d4d51531 223 ProSitePatterns PS00474 Ribosomal protein L3 signature. 108 131 - T 26-04-2016 IPR019926 Ribosomal protein L3, conserved site RGE_RS01610 f05cf034e8776f8943bda3d1d4d51531 223 Gene3D G3DSA:4.10.960.10 86 164 5.1E-26 T 26-04-2016 RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 Pfam PF05345 Putative Ig domain 704 741 5.6E-5 T 26-04-2016 IPR008009 Putative Ig RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 SUPERFAMILY SSF49313 676 753 2.82E-7 T 26-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 SUPERFAMILY SSF49313 591 668 2.2E-7 T 26-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 PANTHER PTHR14218 209 525 7.4E-28 T 26-04-2016 RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 SUPERFAMILY SSF52743 125 172 1.7E-47 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 SUPERFAMILY SSF52743 214 481 1.7E-47 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 SUPERFAMILY SSF49313 502 582 1.88E-8 T 26-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 Gene3D G3DSA:3.40.50.200 125 484 7.1E-68 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 Gene3D G3DSA:2.60.40.10 505 582 1.6E-6 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 Gene3D G3DSA:2.60.40.10 676 753 4.3E-5 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 Gene3D G3DSA:2.60.40.10 593 667 1.1E-5 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 SMART SM00089 495 581 0.56 T 26-04-2016 IPR022409 PKD/Chitinase domain RGE_RS15375 ea01200cc1d737163985c8f8e02bb0af 753 SMART SM00089 584 668 0.46 T 26-04-2016 IPR022409 PKD/Chitinase domain RGE_RS07150 ae7d20100dd1635e442cca65fd24ea1d 215 Pfam PF00005 ABC transporter 18 162 1.5E-31 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS07150 ae7d20100dd1635e442cca65fd24ea1d 215 SUPERFAMILY SSF52540 2 213 4.79E-62 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07150 ae7d20100dd1635e442cca65fd24ea1d 215 SMART SM00382 26 211 2.1E-12 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS07150 ae7d20100dd1635e442cca65fd24ea1d 215 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS07150 ae7d20100dd1635e442cca65fd24ea1d 215 Gene3D G3DSA:3.40.50.300 2 213 8.1E-63 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07150 ae7d20100dd1635e442cca65fd24ea1d 215 PANTHER PTHR24220:SF430 3 207 9.9E-86 T 26-04-2016 RGE_RS07150 ae7d20100dd1635e442cca65fd24ea1d 215 PANTHER PTHR24220 3 207 9.9E-86 T 26-04-2016 RGE_RS16715 ddd2f85052ab93ae39709772375883ec 130 SUPERFAMILY SSF54427 32 129 4.88E-35 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS16715 ddd2f85052ab93ae39709772375883ec 130 Gene3D G3DSA:3.10.450.50 12 129 2.0E-42 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS16715 ddd2f85052ab93ae39709772375883ec 130 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 9 128 27.244 T 26-04-2016 IPR023006 Uncharacterised protein family UPF0225 RGE_RS16715 ddd2f85052ab93ae39709772375883ec 130 PANTHER PTHR33747 17 129 2.2E-12 T 26-04-2016 RGE_RS00975 9160a5d21c0be013144f377adc90fd70 508 Pfam PF02913 FAD linked oxidases, C-terminal domain 239 480 3.2E-65 T 26-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RGE_RS00975 9160a5d21c0be013144f377adc90fd70 508 SUPERFAMILY SSF56176 29 240 1.68E-62 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS00975 9160a5d21c0be013144f377adc90fd70 508 SUPERFAMILY SSF55103 214 483 1.03E-70 T 26-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RGE_RS00975 9160a5d21c0be013144f377adc90fd70 508 Pfam PF01565 FAD binding domain 65 203 1.9E-36 T 26-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RGE_RS00975 9160a5d21c0be013144f377adc90fd70 508 Gene3D G3DSA:3.30.43.10 21 119 4.9E-24 T 26-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RGE_RS00975 9160a5d21c0be013144f377adc90fd70 508 PANTHER PTHR11748 25 499 1.8E-183 T 26-04-2016 RGE_RS00975 9160a5d21c0be013144f377adc90fd70 508 Gene3D G3DSA:3.30.465.10 120 240 2.4E-29 T 26-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RGE_RS00975 9160a5d21c0be013144f377adc90fd70 508 PANTHER PTHR11748:SF78 25 499 1.8E-183 T 26-04-2016 RGE_RS00975 9160a5d21c0be013144f377adc90fd70 508 Gene3D G3DSA:1.10.45.10 441 480 1.4E-10 T 26-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RGE_RS20980 912f0b908024cf9056d11ea43c4fa8b6 405 PIRSF PIRSF005572 5 385 1.2E-129 T 26-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RGE_RS20980 912f0b908024cf9056d11ea43c4fa8b6 405 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 198 217 - T 26-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RGE_RS20980 912f0b908024cf9056d11ea43c4fa8b6 405 Gene3D G3DSA:3.40.640.10 20 253 1.0E-89 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS20980 912f0b908024cf9056d11ea43c4fa8b6 405 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 4 396 50.865 T 26-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 RGE_RS20980 912f0b908024cf9056d11ea43c4fa8b6 405 PANTHER PTHR11601 1 405 1.2E-217 T 26-04-2016 RGE_RS20980 912f0b908024cf9056d11ea43c4fa8b6 405 Gene3D G3DSA:3.90.1150.10 254 374 7.0E-50 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS20980 912f0b908024cf9056d11ea43c4fa8b6 405 Pfam PF00266 Aminotransferase class-V 8 369 5.6E-81 T 26-04-2016 IPR000192 Aminotransferase class V domain RGE_RS20980 912f0b908024cf9056d11ea43c4fa8b6 405 PANTHER PTHR11601:SF45 1 405 1.2E-217 T 26-04-2016 RGE_RS20980 912f0b908024cf9056d11ea43c4fa8b6 405 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 6 405 7.7E-203 T 26-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 RGE_RS20980 912f0b908024cf9056d11ea43c4fa8b6 405 SUPERFAMILY SSF53383 6 389 6.99E-110 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS08590 9700828c0af3fbb34de96e5926b2a50f 209 PIRSF PIRSF006324 1 207 7.6E-49 T 26-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RGE_RS08590 9700828c0af3fbb34de96e5926b2a50f 209 PANTHER PTHR30086 1 209 1.1E-75 T 26-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RGE_RS08590 9700828c0af3fbb34de96e5926b2a50f 209 Pfam PF01810 LysE type translocator 16 202 3.3E-28 T 26-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RGE_RS08590 9700828c0af3fbb34de96e5926b2a50f 209 PANTHER PTHR30086:SF14 1 209 1.1E-75 T 26-04-2016 RGE_RS02935 736945034a503d58d7eec559e91098fe 576 Gene3D G3DSA:3.40.50.300 320 551 8.0E-76 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02935 736945034a503d58d7eec559e91098fe 576 Gene3D G3DSA:1.20.1560.10 3 308 1.1E-28 T 26-04-2016 RGE_RS02935 736945034a503d58d7eec559e91098fe 576 ProSitePatterns PS00211 ABC transporters family signature. 459 473 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS02935 736945034a503d58d7eec559e91098fe 576 SUPERFAMILY SSF90123 3 308 7.46E-39 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS02935 736945034a503d58d7eec559e91098fe 576 Pfam PF00664 ABC transporter transmembrane region 49 232 9.9E-14 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS02935 736945034a503d58d7eec559e91098fe 576 PANTHER PTHR24222 1 576 3.1E-221 T 26-04-2016 RGE_RS02935 736945034a503d58d7eec559e91098fe 576 Pfam PF00005 ABC transporter 338 487 8.6E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS02935 736945034a503d58d7eec559e91098fe 576 SUPERFAMILY SSF52540 315 556 3.22E-87 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02935 736945034a503d58d7eec559e91098fe 576 SMART SM00382 347 533 3.1E-17 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS02935 736945034a503d58d7eec559e91098fe 576 PANTHER PTHR24222:SF24 1 576 3.1E-221 T 26-04-2016 RGE_RS09375 06dc5cdb1f72819b579d35156133fb20 144 PRINTS PR00607 Class IE cytochrome C signature 82 92 1.9E-13 T 26-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RGE_RS09375 06dc5cdb1f72819b579d35156133fb20 144 PRINTS PR00607 Class IE cytochrome C signature 71 82 1.9E-13 T 26-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RGE_RS09375 06dc5cdb1f72819b579d35156133fb20 144 PRINTS PR00607 Class IE cytochrome C signature 129 140 1.9E-13 T 26-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RGE_RS09375 06dc5cdb1f72819b579d35156133fb20 144 PRINTS PR00607 Class IE cytochrome C signature 114 126 1.9E-13 T 26-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RGE_RS09375 06dc5cdb1f72819b579d35156133fb20 144 Gene3D G3DSA:1.10.760.10 61 140 3.4E-30 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS09375 06dc5cdb1f72819b579d35156133fb20 144 SUPERFAMILY SSF46626 45 140 5.59E-18 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS09375 06dc5cdb1f72819b579d35156133fb20 144 PANTHER PTHR40942:SF1 7 144 1.7E-35 T 26-04-2016 RGE_RS09375 06dc5cdb1f72819b579d35156133fb20 144 PANTHER PTHR40942 7 144 1.7E-35 T 26-04-2016 RGE_RS09375 06dc5cdb1f72819b579d35156133fb20 144 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 60 139 2.1E-14 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 12 693 0.0 T 26-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Gene3D G3DSA:3.30.230.70 317 543 1.2E-86 T 26-04-2016 IPR027408 PNPase/RNase PH domain RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Gene3D G3DSA:3.30.230.70 3 227 7.1E-83 T 26-04-2016 IPR027408 PNPase/RNase PH domain RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 SUPERFAMILY SSF55666 452 549 9.12E-27 T 26-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Pfam PF00013 KH domain 559 616 1.9E-10 T 26-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Pfam PF00575 S1 RNA binding domain 621 692 1.1E-15 T 26-04-2016 IPR003029 S1 domain GO:0003676 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Gene3D G3DSA:2.40.50.140 621 696 6.0E-25 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 SUPERFAMILY SSF55666 147 238 3.65E-30 T 26-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 5 695 29.975 T 26-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 SUPERFAMILY SSF54211 3 146 9.62E-50 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Gene3D G3DSA:3.30.1370.10 554 620 3.1E-25 T 26-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 PANTHER PTHR11252 2 763 0.0 T 26-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Gene3D G3DSA:1.10.10.400 228 316 7.0E-20 T 26-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 PANTHER PTHR11252:SF0 2 763 0.0 T 26-04-2016 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 SMART SM00322 554 619 4.6E-13 T 26-04-2016 IPR004087 K Homology domain GO:0003676 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 246 322 2.0E-16 T 26-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 SUPERFAMILY SSF50249 622 705 1.95E-20 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 SUPERFAMILY SSF54791 557 642 3.22E-23 T 26-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 SMART SM00316 622 692 3.6E-24 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 SUPERFAMILY SSF46915 241 323 3.4E-15 T 26-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Pfam PF01138 3' exoribonuclease family, domain 1 17 146 3.2E-20 T 26-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Pfam PF01138 3' exoribonuclease family, domain 1 326 458 8.9E-22 T 26-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Pfam PF03725 3' exoribonuclease family, domain 2 463 531 2.3E-4 T 26-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 Pfam PF03725 3' exoribonuclease family, domain 2 149 212 2.9E-12 T 26-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 PIRSF PIRSF005499 3 724 2.0E-293 T 26-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RGE_RS07630 8964adf87ee6462a3d7ee4b26ab3f3d1 766 SUPERFAMILY SSF54211 297 490 4.76E-47 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 26-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 Hamap MF_00743 Fumarate hydratase class II [fumC]. 8 464 79.956 T 26-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 PRINTS PR00145 Argininosuccinate lyase family signature 137 159 6.2E-7 T 26-04-2016 RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 PRINTS PR00145 Argininosuccinate lyase family signature 320 336 6.2E-7 T 26-04-2016 RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 PRINTS PR00145 Argininosuccinate lyase family signature 178 198 6.2E-7 T 26-04-2016 RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 SUPERFAMILY SSF48557 9 464 2.36E-142 T 26-04-2016 IPR008948 L-Aspartase-like GO:0003824 RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 Pfam PF10415 Fumarase C C-terminus 412 462 1.1E-16 T 26-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 PANTHER PTHR11444:SF1 9 465 1.2E-211 T 26-04-2016 RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 Gene3D G3DSA:1.20.200.10 143 405 9.4E-94 T 26-04-2016 RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 Gene3D G3DSA:1.10.275.10 9 142 1.4E-54 T 26-04-2016 IPR024083 Fumarase/histidase, N-terminal RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 5.0E-33 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 5.0E-33 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 PRINTS PR00149 Fumarate lyase superfamily signature 138 156 5.0E-33 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 5.0E-33 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 Pfam PF00206 Lyase 16 345 1.4E-99 T 26-04-2016 IPR022761 Fumarate lyase, N-terminal RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 Gene3D G3DSA:1.10.40.30 408 464 6.9E-20 T 26-04-2016 RGE_RS13915 578cf8d2ebe1d890360795b8524479b8 465 PANTHER PTHR11444 9 465 1.2E-211 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS06140 44917c4a16fe8d9e2fbf430f6dfa4c9a 290 PANTHER PTHR22855:SF17 1 286 1.3E-153 T 26-04-2016 RGE_RS06140 44917c4a16fe8d9e2fbf430f6dfa4c9a 290 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 285 2.4E-123 T 26-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS06140 44917c4a16fe8d9e2fbf430f6dfa4c9a 290 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 283 38.032 T 26-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS06140 44917c4a16fe8d9e2fbf430f6dfa4c9a 290 PANTHER PTHR22855 1 286 1.3E-153 T 26-04-2016 RGE_RS06140 44917c4a16fe8d9e2fbf430f6dfa4c9a 290 SUPERFAMILY SSF52096 27 283 4.31E-83 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS06140 44917c4a16fe8d9e2fbf430f6dfa4c9a 290 Gene3D G3DSA:3.90.226.10 21 288 1.0E-67 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS06140 44917c4a16fe8d9e2fbf430f6dfa4c9a 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 202 219 1.8E-38 T 26-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS06140 44917c4a16fe8d9e2fbf430f6dfa4c9a 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 253 262 1.8E-38 T 26-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS06140 44917c4a16fe8d9e2fbf430f6dfa4c9a 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 131 145 1.8E-38 T 26-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS06140 44917c4a16fe8d9e2fbf430f6dfa4c9a 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 165 183 1.8E-38 T 26-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS06140 44917c4a16fe8d9e2fbf430f6dfa4c9a 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 231 242 1.8E-38 T 26-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS06140 44917c4a16fe8d9e2fbf430f6dfa4c9a 290 Pfam PF01039 Carboxyl transferase domain 108 241 1.2E-13 T 26-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS04475 e792382877800f56d140a1ff11c09217 196 SUPERFAMILY SSF54631 39 175 2.73E-13 T 26-04-2016 RGE_RS04475 e792382877800f56d140a1ff11c09217 196 Gene3D G3DSA:3.10.580.10 41 175 1.2E-10 T 26-04-2016 RGE_RS08285 c985562096b40f1995afac8a60995386 164 Gene3D G3DSA:3.30.700.10 9 46 2.9E-6 T 26-04-2016 RGE_RS08285 c985562096b40f1995afac8a60995386 164 SUPERFAMILY SSF54523 9 128 1.49E-12 T 26-04-2016 RGE_RS08285 c985562096b40f1995afac8a60995386 164 Pfam PF12019 Type II transport protein GspH 43 141 8.3E-6 T 26-04-2016 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00819 CbxX/CfqX superfamily signature 87 102 1.2E-73 T 26-04-2016 IPR000641 CbxX/CfqX GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00819 CbxX/CfqX superfamily signature 208 227 1.2E-73 T 26-04-2016 IPR000641 CbxX/CfqX GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00819 CbxX/CfqX superfamily signature 125 139 1.2E-73 T 26-04-2016 IPR000641 CbxX/CfqX GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00819 CbxX/CfqX superfamily signature 265 277 1.2E-73 T 26-04-2016 IPR000641 CbxX/CfqX GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00819 CbxX/CfqX superfamily signature 47 61 1.2E-73 T 26-04-2016 IPR000641 CbxX/CfqX GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00819 CbxX/CfqX superfamily signature 139 158 1.2E-73 T 26-04-2016 IPR000641 CbxX/CfqX GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00819 CbxX/CfqX superfamily signature 170 182 1.2E-73 T 26-04-2016 IPR000641 CbxX/CfqX GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00819 CbxX/CfqX superfamily signature 191 208 1.2E-73 T 26-04-2016 IPR000641 CbxX/CfqX GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 TIGRFAM TIGR02880 cbbX_cfxQ: CbbX protein 34 311 1.4E-155 T 26-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 Gene3D G3DSA:3.40.50.300 43 237 2.3E-24 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PANTHER PTHR13779:SF20 16 305 9.0E-91 T 26-04-2016 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 SMART SM00382 84 223 2.2E-6 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PANTHER PTHR13779 16 305 9.0E-91 T 26-04-2016 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 SUPERFAMILY SSF52540 41 297 1.6E-37 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 88 218 1.6E-16 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00820 CbxX/CfqX protein signature 158 171 1.8E-49 T 26-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00820 CbxX/CfqX protein signature 257 268 1.8E-49 T 26-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00820 CbxX/CfqX protein signature 101 116 1.8E-49 T 26-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00820 CbxX/CfqX protein signature 272 283 1.8E-49 T 26-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00820 CbxX/CfqX protein signature 42 56 1.8E-49 T 26-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00820 CbxX/CfqX protein signature 297 311 1.8E-49 T 26-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RGE_RS17575 89a3945e5739415f8932f534d3a1d1d3 316 PRINTS PR00820 CbxX/CfqX protein signature 60 74 1.8E-49 T 26-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RGE_RS08905 bef733783f178d468b412a4aa5ac02c4 274 Gene3D G3DSA:3.60.21.10 166 267 1.8E-51 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS08905 bef733783f178d468b412a4aa5ac02c4 274 Gene3D G3DSA:3.60.21.10 2 129 1.8E-51 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS08905 bef733783f178d468b412a4aa5ac02c4 274 PANTHER PTHR24032:SF27 3 255 1.5E-95 T 26-04-2016 RGE_RS08905 bef733783f178d468b412a4aa5ac02c4 274 PANTHER PTHR24032 3 255 1.5E-95 T 26-04-2016 RGE_RS08905 bef733783f178d468b412a4aa5ac02c4 274 SUPERFAMILY SSF56300 2 266 9.41E-54 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS08905 bef733783f178d468b412a4aa5ac02c4 274 PIRSF PIRSF000903 1 272 4.8E-98 T 26-04-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 RGE_RS08905 bef733783f178d468b412a4aa5ac02c4 274 Pfam PF00149 Calcineurin-like phosphoesterase 2 122 6.0E-12 T 26-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RGE_RS08905 bef733783f178d468b412a4aa5ac02c4 274 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 2 267 8.6E-77 T 26-04-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 RGE_RS17915 3940bea5f0a785be1f6cd7d760e987ad 136 SUPERFAMILY SSF52833 4 135 5.59E-39 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS17915 3940bea5f0a785be1f6cd7d760e987ad 136 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 7 135 4.0E-30 T 26-04-2016 RGE_RS17915 3940bea5f0a785be1f6cd7d760e987ad 136 PANTHER PTHR10371 3 135 1.1E-24 T 26-04-2016 RGE_RS17915 3940bea5f0a785be1f6cd7d760e987ad 136 PIRSF PIRSF000216 1 136 1.6E-31 T 26-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RGE_RS08365 d872e36476d9e5a82bbb57d6e9b68c5c 372 Gene3D G3DSA:3.40.50.150 179 303 6.8E-16 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS08365 d872e36476d9e5a82bbb57d6e9b68c5c 372 SUPERFAMILY SSF53335 185 302 2.05E-15 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS08365 d872e36476d9e5a82bbb57d6e9b68c5c 372 SUPERFAMILY SSF48452 13 93 3.2E-11 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS08365 d872e36476d9e5a82bbb57d6e9b68c5c 372 Gene3D G3DSA:1.25.40.10 13 132 2.3E-11 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS08365 d872e36476d9e5a82bbb57d6e9b68c5c 372 SMART SM00028 15 48 34.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS08365 d872e36476d9e5a82bbb57d6e9b68c5c 372 SMART SM00028 49 82 8.2 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00575 f79bb0c42f01d0d388bef3d3dbc99c34 219 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 13 211 1.5E-56 T 26-04-2016 IPR005744 Hly-III GO:0016021|GO:0019835 RGE_RS00575 f79bb0c42f01d0d388bef3d3dbc99c34 219 PANTHER PTHR20855:SF3 10 212 3.8E-55 T 26-04-2016 IPR005744 Hly-III GO:0016021|GO:0019835 RGE_RS00575 f79bb0c42f01d0d388bef3d3dbc99c34 219 Pfam PF03006 Haemolysin-III related 10 207 2.1E-35 T 26-04-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 RGE_RS00575 f79bb0c42f01d0d388bef3d3dbc99c34 219 PANTHER PTHR20855 10 212 3.8E-55 T 26-04-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 SUPERFAMILY SSF56712 3 627 2.49E-169 T 26-04-2016 IPR023405 DNA topoisomerase, type IA, core domain RGE_RS21850 e154e2d2cafbe516da84656253800690 864 Gene3D G3DSA:2.70.20.10 383 504 1.5E-19 T 26-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 Gene3D G3DSA:2.70.20.10 223 348 1.0E-23 T 26-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 SMART SM00436 134 229 1.0E-20 T 26-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 SMART SM00493 3 130 2.9E-13 T 26-04-2016 IPR006171 Toprim domain RGE_RS21850 e154e2d2cafbe516da84656253800690 864 Pfam PF01131 DNA topoisomerase 160 612 1.1E-115 T 26-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 Gene3D G3DSA:1.10.460.10 164 222 8.7E-51 T 26-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 Gene3D G3DSA:1.10.460.10 507 628 8.7E-51 T 26-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 Gene3D G3DSA:3.40.50.140 3 159 1.5E-42 T 26-04-2016 IPR006171 Toprim domain RGE_RS21850 e154e2d2cafbe516da84656253800690 864 TIGRFAM TIGR01056 topB: DNA topoisomerase III 3 676 9.9E-172 T 26-04-2016 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 418 434 4.7E-27 T 26-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 104 117 4.7E-27 T 26-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 537 551 4.7E-27 T 26-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 330 339 4.7E-27 T 26-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 199 217 4.7E-27 T 26-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 Pfam PF01751 Toprim domain 4 139 1.4E-10 T 26-04-2016 IPR006171 Toprim domain RGE_RS21850 e154e2d2cafbe516da84656253800690 864 Pfam PF13342 C-terminal repeat of topoisomerase 672 736 3.8E-18 T 26-04-2016 IPR025589 Topoisomerase C-terminal repeat RGE_RS21850 e154e2d2cafbe516da84656253800690 864 Pfam PF13342 C-terminal repeat of topoisomerase 785 846 3.9E-16 T 26-04-2016 IPR025589 Topoisomerase C-terminal repeat RGE_RS21850 e154e2d2cafbe516da84656253800690 864 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 324 339 - T 26-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 PANTHER PTHR11390 537 649 4.8E-154 T 26-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 PANTHER PTHR11390 1 520 4.8E-154 T 26-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RGE_RS21850 e154e2d2cafbe516da84656253800690 864 SMART SM00437 287 574 5.0E-75 T 26-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 RGE_RS15220 119744dfb1da45ed6cb52c576d1a7db3 187 PIRSF PIRSF000239 1 187 3.6E-55 T 26-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 RGE_RS15220 119744dfb1da45ed6cb52c576d1a7db3 187 PANTHER PTHR10681 1 187 5.6E-93 T 26-04-2016 RGE_RS15220 119744dfb1da45ed6cb52c576d1a7db3 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 182 6.6E-5 T 26-04-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RGE_RS15220 119744dfb1da45ed6cb52c576d1a7db3 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 4.6E-103 T 26-04-2016 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RGE_RS15220 119744dfb1da45ed6cb52c576d1a7db3 187 SUPERFAMILY SSF52833 1 186 1.49E-57 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS15220 119744dfb1da45ed6cb52c576d1a7db3 187 Pfam PF00578 AhpC/TSA family 5 132 6.5E-34 T 26-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RGE_RS15220 119744dfb1da45ed6cb52c576d1a7db3 187 Gene3D G3DSA:3.40.30.10 4 183 1.5E-62 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS15220 119744dfb1da45ed6cb52c576d1a7db3 187 PANTHER PTHR10681:SF121 1 187 5.6E-93 T 26-04-2016 RGE_RS09655 6d4bdccbfe0a73d04f65ad63b014e347 136 PANTHER PTHR30435:SF2 1 134 6.8E-51 T 26-04-2016 RGE_RS09655 6d4bdccbfe0a73d04f65ad63b014e347 136 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 87 132 1.6E-12 T 26-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RGE_RS09655 6d4bdccbfe0a73d04f65ad63b014e347 136 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 7 134 1.8E-41 T 26-04-2016 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 RGE_RS09655 6d4bdccbfe0a73d04f65ad63b014e347 136 PANTHER PTHR30435 1 134 6.8E-51 T 26-04-2016 RGE_RS09655 6d4bdccbfe0a73d04f65ad63b014e347 136 Pfam PF00460 Flagella basal body rod protein 9 31 7.3E-6 T 26-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RGE_RS17105 7563ed0fb2db3aeac12f609320fd14f3 427 SUPERFAMILY SSF53756 65 423 3.33E-8 T 26-04-2016 RGE_RS17105 7563ed0fb2db3aeac12f609320fd14f3 427 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 40 214 6.0E-59 T 26-04-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 RGE_RS17105 7563ed0fb2db3aeac12f609320fd14f3 427 PANTHER PTHR23417 136 146 1.1E-63 T 26-04-2016 RGE_RS17105 7563ed0fb2db3aeac12f609320fd14f3 427 PANTHER PTHR23417 1 117 1.1E-63 T 26-04-2016 RGE_RS17105 7563ed0fb2db3aeac12f609320fd14f3 427 PANTHER PTHR23417 196 424 1.1E-63 T 26-04-2016 RGE_RS17105 7563ed0fb2db3aeac12f609320fd14f3 427 PANTHER PTHR23417:SF2 136 146 1.1E-63 T 26-04-2016 RGE_RS17105 7563ed0fb2db3aeac12f609320fd14f3 427 PANTHER PTHR23417:SF2 1 117 1.1E-63 T 26-04-2016 RGE_RS17105 7563ed0fb2db3aeac12f609320fd14f3 427 PANTHER PTHR23417:SF2 196 424 1.1E-63 T 26-04-2016 RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 Pfam PF00390 Malic enzyme, N-terminal domain 26 158 1.6E-27 T 26-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 SMART SM00919 170 411 2.7E-136 T 26-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 PIRSF PIRSF036684 5 768 0.0 T 26-04-2016 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 Gene3D G3DSA:3.40.50.720 168 459 1.4E-86 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 SUPERFAMILY SSF53659 439 764 1.03E-89 T 26-04-2016 RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 Gene3D G3DSA:3.40.50.10750 580 737 7.8E-50 T 26-04-2016 RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 PANTHER PTHR23406 39 465 4.8E-160 T 26-04-2016 RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 Pfam PF03949 Malic enzyme, NAD binding domain 172 371 2.7E-20 T 26-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 SMART SM01274 25 158 1.6E-80 T 26-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 SUPERFAMILY SSF51735 170 463 1.83E-83 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 SUPERFAMILY SSF53223 17 168 1.01E-52 T 26-04-2016 RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 Gene3D G3DSA:3.40.50.10380 17 167 1.5E-52 T 26-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RGE_RS02285 d12bdcda214dc00eea9847b630c8c035 775 Pfam PF01515 Phosphate acetyl/butaryl transferase 439 761 3.0E-93 T 26-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RGE_RS05095 3bcb3306cf21ffa3d48a885eae54c32f 165 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 1.5E-10 T 26-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 RGE_RS05095 3bcb3306cf21ffa3d48a885eae54c32f 165 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 1.5E-10 T 26-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 RGE_RS05095 3bcb3306cf21ffa3d48a885eae54c32f 165 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 1.5E-10 T 26-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 RGE_RS05095 3bcb3306cf21ffa3d48a885eae54c32f 165 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 3 81 2.0E-16 T 26-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 RGE_RS05095 3bcb3306cf21ffa3d48a885eae54c32f 165 PANTHER PTHR33162 9 121 3.3E-15 T 26-04-2016 RGE_RS05095 3bcb3306cf21ffa3d48a885eae54c32f 165 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 131 14.417 T 26-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 RGE_RS05095 3bcb3306cf21ffa3d48a885eae54c32f 165 Pfam PF02416 mttA/Hcf106 family 5 34 8.4E-8 T 26-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RGE_RS05095 3bcb3306cf21ffa3d48a885eae54c32f 165 PANTHER PTHR33162:SF1 9 121 3.3E-15 T 26-04-2016 RGE_RS09620 89a9d1b32efec9aa12e45387d87d837b 306 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 206 223 - T 26-04-2016 IPR000540 Flagellar motor protein MotA, conserved site RGE_RS09620 89a9d1b32efec9aa12e45387d87d837b 306 PANTHER PTHR30433 1 290 7.2E-98 T 26-04-2016 RGE_RS09620 89a9d1b32efec9aa12e45387d87d837b 306 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 282 2.5E-104 T 26-04-2016 IPR022522 Flagellar motor stator, MotA RGE_RS09620 89a9d1b32efec9aa12e45387d87d837b 306 Pfam PF01618 MotA/TolQ/ExbB proton channel family 137 238 4.6E-12 T 26-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RGE_RS09620 89a9d1b32efec9aa12e45387d87d837b 306 PANTHER PTHR30433:SF4 1 290 7.2E-98 T 26-04-2016 IPR022522 Flagellar motor stator, MotA RGE_RS02265 70fdbb96adddb7e30c54453de2a4ac13 227 PANTHER PTHR39200 1 210 1.0E-21 T 26-04-2016 RGE_RS02265 70fdbb96adddb7e30c54453de2a4ac13 227 PANTHER PTHR39200:SF1 1 210 1.0E-21 T 26-04-2016 RGE_RS02265 70fdbb96adddb7e30c54453de2a4ac13 227 Pfam PF10988 Putative auto-transporter adhesin, head GIN domain 25 211 1.4E-42 T 26-04-2016 IPR021255 Putative auto-transporter adhesin, head GIN domain RGE_RS05945 34b6192ff3afd188f7dc16ab28a5a9a5 577 SUPERFAMILY SSF53474 86 568 5.87E-107 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS05945 34b6192ff3afd188f7dc16ab28a5a9a5 577 PANTHER PTHR11559:SF142 28 567 2.8E-136 T 26-04-2016 RGE_RS05945 34b6192ff3afd188f7dc16ab28a5a9a5 577 Pfam PF00135 Carboxylesterase family 77 563 1.6E-92 T 26-04-2016 IPR002018 Carboxylesterase, type B RGE_RS05945 34b6192ff3afd188f7dc16ab28a5a9a5 577 PANTHER PTHR11559 28 567 2.8E-136 T 26-04-2016 RGE_RS05945 34b6192ff3afd188f7dc16ab28a5a9a5 577 Gene3D G3DSA:3.40.50.1820 69 568 1.7E-129 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS06600 22c7038f5b1cfccc0dd5328a9e849c1b 151 Pfam PF05154 TM2 domain 5 40 1.3E-7 T 26-04-2016 IPR007829 TM2 domain RGE_RS05245 e56d938e55697740aa01a53688662a1f 475 TIGRFAM TIGR03017 EpsF: chain length determinant protein EpsF 1 443 5.0E-157 T 26-04-2016 IPR017468 Chain length determinant protein EpsF RGE_RS05245 e56d938e55697740aa01a53688662a1f 475 PANTHER PTHR32309 1 444 3.8E-67 T 26-04-2016 RGE_RS05245 e56d938e55697740aa01a53688662a1f 475 Pfam PF13807 G-rich domain on putative tyrosine kinase 347 417 6.2E-9 T 26-04-2016 IPR032807 Tyrosine kinase, G-rich domain RGE_RS05245 e56d938e55697740aa01a53688662a1f 475 Pfam PF02706 Chain length determinant protein 2 154 8.3E-15 T 26-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 RGE_RS05245 e56d938e55697740aa01a53688662a1f 475 PANTHER PTHR32309:SF13 1 444 3.8E-67 T 26-04-2016 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 Gene3D G3DSA:1.10.10.10 120 209 2.6E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 PANTHER PTHR26402 2 209 1.8E-66 T 26-04-2016 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 Gene3D G3DSA:3.40.50.2300 2 119 4.2E-36 T 26-04-2016 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 PANTHER PTHR26402:SF458 2 209 1.8E-66 T 26-04-2016 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 SMART SM00448 2 115 1.6E-29 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 5.1E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 5.1E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 5.1E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 1.6E-16 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 SUPERFAMILY SSF46894 142 209 1.43E-17 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 Pfam PF00072 Response regulator receiver domain 5 116 1.4E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 SMART SM00421 146 203 3.9E-17 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS04975 cdbb0d1b74fc87d8f24dc48727b7d123 210 SUPERFAMILY SSF52172 2 133 1.42E-33 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS04495 eee14e2c4165bebf177abc66942a23e8 595 SUPERFAMILY SSF47203 288 475 4.03E-52 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS04495 eee14e2c4165bebf177abc66942a23e8 595 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 164 272 6.6E-17 T 26-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RGE_RS04495 eee14e2c4165bebf177abc66942a23e8 595 Gene3D G3DSA:2.40.110.10 162 268 5.0E-27 T 26-04-2016 RGE_RS04495 eee14e2c4165bebf177abc66942a23e8 595 PANTHER PTHR10909:SF296 3 477 3.5E-217 T 26-04-2016 RGE_RS04495 eee14e2c4165bebf177abc66942a23e8 595 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 451 7.3E-22 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS04495 eee14e2c4165bebf177abc66942a23e8 595 Gene3D G3DSA:1.20.140.10 269 467 4.9E-52 T 26-04-2016 RGE_RS04495 eee14e2c4165bebf177abc66942a23e8 595 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 40 159 4.4E-10 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS04495 eee14e2c4165bebf177abc66942a23e8 595 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 2 34 2.8E-13 T 26-04-2016 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria RGE_RS04495 eee14e2c4165bebf177abc66942a23e8 595 SUPERFAMILY SSF56645 36 274 3.93E-55 T 26-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RGE_RS04495 eee14e2c4165bebf177abc66942a23e8 595 Gene3D G3DSA:1.10.540.10 37 161 3.4E-15 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS04495 eee14e2c4165bebf177abc66942a23e8 595 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 472 591 3.0E-33 T 26-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RGE_RS04495 eee14e2c4165bebf177abc66942a23e8 595 PANTHER PTHR10909 3 477 3.5E-217 T 26-04-2016 RGE_RS19740 7045c64b2742a1290eef1d8c5f11d593 177 SUPERFAMILY SSF54211 5 174 4.25E-53 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS19740 7045c64b2742a1290eef1d8c5f11d593 177 PANTHER PTHR35039 24 173 2.3E-18 T 26-04-2016 RGE_RS19740 7045c64b2742a1290eef1d8c5f11d593 177 PANTHER PTHR35039:SF1 24 173 2.3E-18 T 26-04-2016 RGE_RS19740 7045c64b2742a1290eef1d8c5f11d593 177 Gene3D G3DSA:3.30.230.60 6 174 2.2E-59 T 26-04-2016 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|UniPathway: UPA00293 RGE_RS19740 7045c64b2742a1290eef1d8c5f11d593 177 TIGRFAM TIGR03126 one_C_fae: formaldehyde-activating enzyme 26 172 1.4E-39 T 26-04-2016 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|UniPathway: UPA00293 RGE_RS19740 7045c64b2742a1290eef1d8c5f11d593 177 Pfam PF08714 Formaldehyde-activating enzyme (Fae) 10 173 1.1E-58 T 26-04-2016 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|UniPathway: UPA00293 RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 201 3.6E-15 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 161 188 - T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 2.3E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 2.3E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 2.3E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 Gene3D G3DSA:3.40.50.2300 1 118 4.2E-36 T 26-04-2016 RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 SMART SM00448 2 114 8.6E-34 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 Pfam PF00072 Response regulator receiver domain 4 114 4.0E-29 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 SUPERFAMILY SSF52172 1 128 3.56E-34 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 SMART SM00421 144 201 2.1E-15 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 SUPERFAMILY SSF46894 138 207 2.01E-18 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 PANTHER PTHR26402 2 207 1.4E-63 T 26-04-2016 RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 Gene3D G3DSA:1.10.10.10 119 208 1.1E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19770 626d526cb448ab5f9ee4849cca110d1a 209 PANTHER PTHR26402:SF151 2 207 1.4E-63 T 26-04-2016 RGE_RS18895 f74404039d319c935d0abe1af5a66b87 469 Gene3D G3DSA:3.90.1150.10 335 468 5.3E-20 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS18895 f74404039d319c935d0abe1af5a66b87 469 PANTHER PTHR11751 89 468 9.8E-108 T 26-04-2016 RGE_RS18895 f74404039d319c935d0abe1af5a66b87 469 SUPERFAMILY SSF46785 3 71 1.53E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18895 f74404039d319c935d0abe1af5a66b87 469 SMART SM00345 8 67 3.9E-14 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS18895 f74404039d319c935d0abe1af5a66b87 469 Gene3D G3DSA:3.40.640.10 141 334 3.1E-47 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS18895 f74404039d319c935d0abe1af5a66b87 469 Gene3D G3DSA:1.10.10.10 4 74 1.6E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18895 f74404039d319c935d0abe1af5a66b87 469 PANTHER PTHR11751:SF314 89 468 9.8E-108 T 26-04-2016 RGE_RS18895 f74404039d319c935d0abe1af5a66b87 469 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 67 1.4E-12 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS18895 f74404039d319c935d0abe1af5a66b87 469 SUPERFAMILY SSF53383 112 468 3.23E-87 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS18895 f74404039d319c935d0abe1af5a66b87 469 Pfam PF00155 Aminotransferase class I and II 125 462 6.7E-30 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 3.4E-10 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 3.4E-10 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 Gene3D G3DSA:1.20.120.530 94 235 1.9E-24 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 PANTHER PTHR11751 1 69 8.8E-31 T 26-04-2016 RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 PANTHER PTHR11751 89 111 8.8E-31 T 26-04-2016 RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 Pfam PF07729 FCD domain 95 224 1.7E-23 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 SMART SM00895 95 225 9.0E-20 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 SMART SM00345 7 66 2.6E-20 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 PANTHER PTHR11751:SF382 1 69 8.8E-31 T 26-04-2016 RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 PANTHER PTHR11751:SF382 89 111 8.8E-31 T 26-04-2016 RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 Gene3D G3DSA:1.10.10.10 2 68 4.1E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 SUPERFAMILY SSF46785 2 70 1.47E-17 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 SUPERFAMILY SSF48008 94 230 4.18E-26 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS17345 a654d7bbcda8fd7edcaa9de21d16ed5d 264 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 65 1.4E-19 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 Pfam PF00140 Sigma-70 factor, region 1.2 23 52 1.7E-5 T 26-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 21 303 1.6E-117 T 26-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 55 302 3.7E-30 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 272 298 - T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 Pfam PF04545 Sigma-70, region 4 244 300 6.5E-15 T 26-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 7 304 50.458 T 26-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 Pfam PF04542 Sigma-70 region 2 60 129 1.7E-17 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 84 97 - T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 PANTHER PTHR30376 9 303 5.6E-99 T 26-04-2016 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 Gene3D G3DSA:1.10.601.10 18 129 3.3E-35 T 26-04-2016 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 PRINTS PR00046 Major sigma-70 factor signature 287 298 6.8E-16 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 PRINTS PR00046 Major sigma-70 factor signature 84 97 6.8E-16 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 PRINTS PR00046 Major sigma-70 factor signature 272 287 6.8E-16 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 PRINTS PR00046 Major sigma-70 factor signature 108 116 6.8E-16 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 Gene3D G3DSA:1.10.10.10 240 304 4.2E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 SUPERFAMILY SSF88946 21 129 1.09E-39 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20350 2dd88d044b42197e3c9312d07e2af7dd 306 SUPERFAMILY SSF88659 207 303 1.01E-15 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS18565 68fd4b578372ce60e6cc66961d8ead9e 685 PANTHER PTHR33121:SF13 437 685 8.1E-60 T 26-04-2016 RGE_RS18565 68fd4b578372ce60e6cc66961d8ead9e 685 PANTHER PTHR33121 437 685 8.1E-60 T 26-04-2016 RGE_RS18565 68fd4b578372ce60e6cc66961d8ead9e 685 SUPERFAMILY SSF141868 439 684 9.68E-69 T 26-04-2016 IPR001633 EAL domain RGE_RS18565 68fd4b578372ce60e6cc66961d8ead9e 685 Pfam PF00563 EAL domain 440 672 5.3E-58 T 26-04-2016 IPR001633 EAL domain RGE_RS18565 68fd4b578372ce60e6cc66961d8ead9e 685 Pfam PF02378 Phosphotransferase system, EIIC 21 330 4.0E-21 T 26-04-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RGE_RS18565 68fd4b578372ce60e6cc66961d8ead9e 685 Gene3D G3DSA:3.20.20.450 439 684 2.6E-75 T 26-04-2016 IPR001633 EAL domain RGE_RS18565 68fd4b578372ce60e6cc66961d8ead9e 685 SMART SM00052 432 678 2.1E-80 T 26-04-2016 IPR001633 EAL domain RGE_RS12665 604a2eb5e8681ddbea57644e5e050fea 227 Pfam PF13857 Ankyrin repeats (many copies) 149 203 1.8E-11 T 26-04-2016 RGE_RS12665 604a2eb5e8681ddbea57644e5e050fea 227 SMART SM00248 99 128 0.027 T 26-04-2016 IPR002110 Ankyrin repeat GO:0005515 RGE_RS12665 604a2eb5e8681ddbea57644e5e050fea 227 SMART SM00248 65 95 1000.0 T 26-04-2016 IPR002110 Ankyrin repeat GO:0005515 RGE_RS12665 604a2eb5e8681ddbea57644e5e050fea 227 SMART SM00248 129 158 0.0034 T 26-04-2016 IPR002110 Ankyrin repeat GO:0005515 RGE_RS12665 604a2eb5e8681ddbea57644e5e050fea 227 SMART SM00248 32 61 730.0 T 26-04-2016 IPR002110 Ankyrin repeat GO:0005515 RGE_RS12665 604a2eb5e8681ddbea57644e5e050fea 227 SMART SM00248 162 191 0.1 T 26-04-2016 IPR002110 Ankyrin repeat GO:0005515 RGE_RS12665 604a2eb5e8681ddbea57644e5e050fea 227 Gene3D G3DSA:1.25.40.20 40 221 8.6E-45 T 26-04-2016 IPR020683 Ankyrin repeat-containing domain RGE_RS12665 604a2eb5e8681ddbea57644e5e050fea 227 Pfam PF12796 Ankyrin repeats (3 copies) 40 128 4.8E-12 T 26-04-2016 IPR020683 Ankyrin repeat-containing domain RGE_RS12665 604a2eb5e8681ddbea57644e5e050fea 227 SUPERFAMILY SSF48403 36 215 8.11E-43 T 26-04-2016 IPR020683 Ankyrin repeat-containing domain RGE_RS12665 604a2eb5e8681ddbea57644e5e050fea 227 PANTHER PTHR24198 38 222 2.4E-40 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 490 496 - T 26-04-2016 IPR018303 P-type ATPase, phosphorylation site RGE_RS17660 783420d62260b623add7fd6da9063d70 804 Gene3D G3DSA:3.40.1110.10 503 619 4.6E-17 T 26-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PANTHER PTHR24093 13 804 4.1E-279 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 Gene3D G3DSA:3.30.70.100 13 79 1.5E-22 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 SUPERFAMILY SSF55008 78 148 4.45E-21 T 26-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PRINTS PR00943 Copper-transporting ATPase signature 207 226 4.9E-9 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PRINTS PR00943 Copper-transporting ATPase signature 411 425 4.9E-9 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PRINTS PR00943 Copper-transporting ATPase signature 471 486 4.9E-9 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PRINTS PR00943 Copper-transporting ATPase signature 258 277 4.9E-9 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PRINTS PR00943 Copper-transporting ATPase signature 278 296 4.9E-9 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PRINTS PR00943 Copper-transporting ATPase signature 669 686 4.9E-9 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 204 795 3.6E-173 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 Gene3D G3DSA:3.30.70.100 80 146 2.3E-25 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 ProSitePatterns PS01229 Hypothetical cof family signature 2. 692 714 - T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 SUPERFAMILY SSF81665 248 292 1.02E-15 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 SUPERFAMILY SSF81665 741 763 1.02E-15 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 SUPERFAMILY SSF81665 389 482 1.02E-15 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 Pfam PF00702 haloacid dehalogenase-like hydrolase 485 706 5.2E-43 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 Pfam PF00122 E1-E2 ATPase 260 479 4.4E-68 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 14 75 8.5E-10 T 26-04-2016 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 SUPERFAMILY SSF55008 10 78 3.8E-18 T 26-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 SUPERFAMILY SSF81653 291 388 2.75E-26 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 Gene3D G3DSA:3.40.50.1000 459 502 8.1E-54 T 26-04-2016 IPR023214 HAD-like domain RGE_RS17660 783420d62260b623add7fd6da9063d70 804 Gene3D G3DSA:3.40.50.1000 620 761 8.1E-54 T 26-04-2016 IPR023214 HAD-like domain RGE_RS17660 783420d62260b623add7fd6da9063d70 804 ProSitePatterns PS01047 Heavy-metal-associated domain. 17 46 - T 26-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 ProSitePatterns PS01047 Heavy-metal-associated domain. 84 113 - T 26-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PANTHER PTHR24093:SF332 13 804 4.1E-279 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 Gene3D G3DSA:2.70.150.10 248 389 1.5E-29 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 Pfam PF00403 Heavy-metal-associated domain 82 140 6.4E-17 T 26-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 Pfam PF00403 Heavy-metal-associated domain 14 56 8.7E-13 T 26-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 SUPERFAMILY SSF56784 545 792 8.71E-55 T 26-04-2016 IPR023214 HAD-like domain RGE_RS17660 783420d62260b623add7fd6da9063d70 804 SUPERFAMILY SSF56784 486 506 8.71E-55 T 26-04-2016 IPR023214 HAD-like domain RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 639 649 1.1E-25 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 692 711 1.1E-25 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 715 727 1.1E-25 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 338 352 1.1E-25 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 488 502 1.1E-25 T 26-04-2016 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 614 772 5.6E-36 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 261 517 3.0E-44 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS17660 783420d62260b623add7fd6da9063d70 804 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 222 794 2.6E-188 T 26-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 SMART SM00091 92 158 2.0E-4 T 26-04-2016 IPR000014 PAS domain RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 PANTHER PTHR24423:SF554 42 426 6.5E-105 T 26-04-2016 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 Gene3D G3DSA:3.30.450.20 79 190 6.7E-8 T 26-04-2016 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 SMART SM00387 308 421 2.4E-39 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 364 374 1.8E-18 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 399 1.8E-18 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 346 360 1.8E-18 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 418 1.8E-18 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 Gene3D G3DSA:3.30.565.10 250 420 2.1E-45 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 SUPERFAMILY SSF47384 184 262 5.69E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 SUPERFAMILY SSF55874 254 419 1.24E-41 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 SMART SM00388 198 264 7.2E-21 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 PANTHER PTHR24423 42 426 6.5E-105 T 26-04-2016 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 SUPERFAMILY SSF55785 80 141 2.09E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 89 417 3.3E-114 T 26-04-2016 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 311 419 1.5E-25 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 Pfam PF00512 His Kinase A (phospho-acceptor) domain 198 263 1.3E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 Gene3D G3DSA:1.10.287.130 191 249 2.2E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 Pfam PF13188 PAS domain 93 139 1.3E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS16130 eb84f5dd5a142aa789f00c410866a02f 439 Pfam PF11808 Domain of unknown function (DUF3329) 29 82 4.2E-7 T 26-04-2016 IPR021766 Protein of unknown function DUF3329 GO:0004673 RGE_RS19475 58f3737ced0585d8c78191d2eb9f17fd 168 ProDom PD022010 DECARBOXYLASE ACID PHENOLIC P-COUMARIC LYASE 4.1.1.- PAD PADC FERULATE PROBABLE 9 153 1.0E-65 T 26-04-2016 IPR008729 Phenolic acid decarboxylase, bacterial GO:0016831 KEGG: 00053+4.1.1.-|KEGG: 00230+4.1.1.-|KEGG: 00261+4.1.1.-|KEGG: 00350+4.1.1.-|KEGG: 00351+4.1.1.-|KEGG: 00360+4.1.1.-|KEGG: 00362+4.1.1.-|KEGG: 00380+4.1.1.-|KEGG: 00620+4.1.1.-|KEGG: 00621+4.1.1.-|KEGG: 00622+4.1.1.-|KEGG: 00624+4.1.1.-|KEGG: 00625+4.1.1.-|KEGG: 00626+4.1.1.-|KEGG: 00940+4.1.1.- RGE_RS19475 58f3737ced0585d8c78191d2eb9f17fd 168 SUPERFAMILY SSF50814 4 167 6.86E-71 T 26-04-2016 IPR011038 Calycin-like RGE_RS19475 58f3737ced0585d8c78191d2eb9f17fd 168 Pfam PF05870 Phenolic acid decarboxylase (PAD) 9 165 5.4E-85 T 26-04-2016 IPR008729 Phenolic acid decarboxylase, bacterial GO:0016831 KEGG: 00053+4.1.1.-|KEGG: 00230+4.1.1.-|KEGG: 00261+4.1.1.-|KEGG: 00350+4.1.1.-|KEGG: 00351+4.1.1.-|KEGG: 00360+4.1.1.-|KEGG: 00362+4.1.1.-|KEGG: 00380+4.1.1.-|KEGG: 00620+4.1.1.-|KEGG: 00621+4.1.1.-|KEGG: 00622+4.1.1.-|KEGG: 00624+4.1.1.-|KEGG: 00625+4.1.1.-|KEGG: 00626+4.1.1.-|KEGG: 00940+4.1.1.- RGE_RS19475 58f3737ced0585d8c78191d2eb9f17fd 168 Gene3D G3DSA:2.40.128.20 9 167 8.2E-73 T 26-04-2016 IPR012674 Calycin RGE_RS19475 58f3737ced0585d8c78191d2eb9f17fd 168 PANTHER PTHR40087:SF1 1 168 1.0E-73 T 26-04-2016 RGE_RS19475 58f3737ced0585d8c78191d2eb9f17fd 168 PANTHER PTHR40087 1 168 1.0E-73 T 26-04-2016 RGE_RS18315 ee219ce58213254c3579756161552da4 586 Pfam PF01019 Gamma-glutamyltranspeptidase 31 576 2.7E-135 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS18315 ee219ce58213254c3579756161552da4 586 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 263 282 7.6E-62 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS18315 ee219ce58213254c3579756161552da4 586 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 482 499 7.6E-62 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS18315 ee219ce58213254c3579756161552da4 586 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 106 124 7.6E-62 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS18315 ee219ce58213254c3579756161552da4 586 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 385 403 7.6E-62 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS18315 ee219ce58213254c3579756161552da4 586 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 124 143 7.6E-62 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS18315 ee219ce58213254c3579756161552da4 586 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 233 249 7.6E-62 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS18315 ee219ce58213254c3579756161552da4 586 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 457 472 7.6E-62 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS18315 ee219ce58213254c3579756161552da4 586 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 38 63 7.6E-62 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS18315 ee219ce58213254c3579756161552da4 586 SUPERFAMILY SSF56235 13 580 5.6E-141 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS18315 ee219ce58213254c3579756161552da4 586 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 16 573 9.5E-123 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS18315 ee219ce58213254c3579756161552da4 586 PANTHER PTHR11686 14 586 1.5E-149 T 26-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RGE_RS18315 ee219ce58213254c3579756161552da4 586 PANTHER PTHR11686:SF9 14 586 1.5E-149 T 26-04-2016 RGE_RS06105 f2ed565cea0bf3b128aadf40ca84d9da 363 SUPERFAMILY SSF53659 1 355 9.41E-122 T 26-04-2016 RGE_RS06105 f2ed565cea0bf3b128aadf40ca84d9da 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 2 351 4.0E-131 T 26-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RGE_RS06105 f2ed565cea0bf3b128aadf40ca84d9da 363 PANTHER PTHR11835:SF35 1 363 7.7E-198 T 26-04-2016 RGE_RS06105 f2ed565cea0bf3b128aadf40ca84d9da 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 242 261 - T 26-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RGE_RS06105 f2ed565cea0bf3b128aadf40ca84d9da 363 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 1 355 50.326 T 26-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 RGE_RS06105 f2ed565cea0bf3b128aadf40ca84d9da 363 SMART SM01329 2 351 7.2E-204 T 26-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RGE_RS06105 f2ed565cea0bf3b128aadf40ca84d9da 363 Gene3D G3DSA:3.40.718.10 2 355 8.5E-131 T 26-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RGE_RS06105 f2ed565cea0bf3b128aadf40ca84d9da 363 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 2 350 5.5E-148 T 26-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 RGE_RS06105 f2ed565cea0bf3b128aadf40ca84d9da 363 PANTHER PTHR11835 1 363 7.7E-198 T 26-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RGE_RS22515 3aa4e0a08531918030cb22ef41b24a26 165 Pfam PF00293 NUDIX domain 12 124 2.9E-11 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS22515 3aa4e0a08531918030cb22ef41b24a26 165 SUPERFAMILY SSF55811 5 146 7.72E-22 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS22515 3aa4e0a08531918030cb22ef41b24a26 165 Gene3D G3DSA:3.90.79.10 5 150 3.3E-26 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS10545 c3f21c5a4e922ce8d3b7126948136a8e 343 PANTHER PTHR22550 1 181 2.9E-26 T 26-04-2016 RGE_RS10545 c3f21c5a4e922ce8d3b7126948136a8e 343 PANTHER PTHR22550 215 302 2.9E-26 T 26-04-2016 RGE_RS10545 c3f21c5a4e922ce8d3b7126948136a8e 343 Gene3D G3DSA:3.40.50.410 87 181 2.5E-11 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS10545 c3f21c5a4e922ce8d3b7126948136a8e 343 Gene3D G3DSA:3.40.50.410 217 303 5.4E-10 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS10545 c3f21c5a4e922ce8d3b7126948136a8e 343 Pfam PF07584 Aerotolerance regulator N-terminal 1 75 4.4E-9 T 26-04-2016 IPR024163 Aerotolerance regulator, N-terminal RGE_RS10545 c3f21c5a4e922ce8d3b7126948136a8e 343 SMART SM00327 85 304 5.3E-18 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS10545 c3f21c5a4e922ce8d3b7126948136a8e 343 Pfam PF00092 von Willebrand factor type A domain 218 301 1.1E-8 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS10545 c3f21c5a4e922ce8d3b7126948136a8e 343 Pfam PF13519 von Willebrand factor type A domain 88 174 4.4E-18 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS10545 c3f21c5a4e922ce8d3b7126948136a8e 343 PANTHER PTHR22550:SF8 1 181 2.9E-26 T 26-04-2016 RGE_RS10545 c3f21c5a4e922ce8d3b7126948136a8e 343 PANTHER PTHR22550:SF8 215 302 2.9E-26 T 26-04-2016 RGE_RS10545 c3f21c5a4e922ce8d3b7126948136a8e 343 SUPERFAMILY SSF53300 86 179 3.0E-31 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS10545 c3f21c5a4e922ce8d3b7126948136a8e 343 SUPERFAMILY SSF53300 210 304 3.0E-31 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS23265 13422ec90a8dc68c75a5bd0a75e6f23c 315 Pfam PF00990 Diguanylate cyclase, GGDEF domain 159 309 2.6E-33 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23265 13422ec90a8dc68c75a5bd0a75e6f23c 315 PANTHER PTHR10799 186 310 3.4E-21 T 26-04-2016 RGE_RS23265 13422ec90a8dc68c75a5bd0a75e6f23c 315 PANTHER PTHR10799:SF750 186 310 3.4E-21 T 26-04-2016 RGE_RS23265 13422ec90a8dc68c75a5bd0a75e6f23c 315 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 157 311 2.9E-36 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23265 13422ec90a8dc68c75a5bd0a75e6f23c 315 SUPERFAMILY SSF55073 164 311 5.41E-36 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS23265 13422ec90a8dc68c75a5bd0a75e6f23c 315 SMART SM00267 148 313 9.6E-40 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23265 13422ec90a8dc68c75a5bd0a75e6f23c 315 Gene3D G3DSA:3.30.70.270 161 311 7.8E-44 T 26-04-2016 RGE_RS23225 e040849ded81b74f622631416566806f 340 Pfam PF12833 Helix-turn-helix domain 257 334 3.2E-19 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS23225 e040849ded81b74f622631416566806f 340 PANTHER PTHR11019 242 340 5.1E-19 T 26-04-2016 RGE_RS23225 e040849ded81b74f622631416566806f 340 Gene3D G3DSA:1.10.10.60 288 334 7.3E-13 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23225 e040849ded81b74f622631416566806f 340 SUPERFAMILY SSF46689 288 334 9.86E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23225 e040849ded81b74f622631416566806f 340 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 88 209 7.8E-7 T 26-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RGE_RS23225 e040849ded81b74f622631416566806f 340 Gene3D G3DSA:1.10.10.60 258 275 1.5E-4 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23225 e040849ded81b74f622631416566806f 340 SMART SM00342 250 332 1.7E-17 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS23225 e040849ded81b74f622631416566806f 340 PANTHER PTHR11019:SF53 242 340 5.1E-19 T 26-04-2016 RGE_RS07855 ef3ed87e3a419f4b0844a61b65790954 548 PANTHER PTHR24095 1 542 1.9E-223 T 26-04-2016 RGE_RS07855 ef3ed87e3a419f4b0844a61b65790954 548 Gene3D G3DSA:3.40.50.980 201 338 1.5E-25 T 26-04-2016 RGE_RS07855 ef3ed87e3a419f4b0844a61b65790954 548 SUPERFAMILY SSF56801 15 543 2.88E-132 T 26-04-2016 RGE_RS07855 ef3ed87e3a419f4b0844a61b65790954 548 ProSitePatterns PS00455 Putative AMP-binding domain signature. 191 202 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS07855 ef3ed87e3a419f4b0844a61b65790954 548 Pfam PF00501 AMP-binding enzyme 25 448 3.6E-86 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS07855 ef3ed87e3a419f4b0844a61b65790954 548 Gene3D G3DSA:3.40.50.980 176 200 2.4E-33 T 26-04-2016 RGE_RS07855 ef3ed87e3a419f4b0844a61b65790954 548 Gene3D G3DSA:3.40.50.980 22 131 2.4E-33 T 26-04-2016 RGE_RS07855 ef3ed87e3a419f4b0844a61b65790954 548 PANTHER PTHR24095:SF169 1 542 1.9E-223 T 26-04-2016 RGE_RS07855 ef3ed87e3a419f4b0844a61b65790954 548 Gene3D G3DSA:3.30.300.30 445 544 4.2E-33 T 26-04-2016 RGE_RS07855 ef3ed87e3a419f4b0844a61b65790954 548 Pfam PF13193 AMP-binding enzyme C-terminal domain 457 531 3.2E-20 T 26-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RGE_RS07855 ef3ed87e3a419f4b0844a61b65790954 548 Gene3D G3DSA:2.30.38.10 374 442 2.4E-19 T 26-04-2016 RGE_RS15170 79f60b3f502ad86f97f03e015b7a371d 513 PANTHER PTHR32089:SF63 116 513 2.6E-126 T 26-04-2016 RGE_RS15170 79f60b3f502ad86f97f03e015b7a371d 513 SMART SM00304 210 263 2.0E-4 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS15170 79f60b3f502ad86f97f03e015b7a371d 513 SMART SM00283 264 511 1.0E-81 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS15170 79f60b3f502ad86f97f03e015b7a371d 513 PANTHER PTHR32089 116 513 2.6E-126 T 26-04-2016 RGE_RS15170 79f60b3f502ad86f97f03e015b7a371d 513 SUPERFAMILY SSF158472 210 261 6.02E-5 T 26-04-2016 RGE_RS15170 79f60b3f502ad86f97f03e015b7a371d 513 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 320 510 2.5E-57 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS15170 79f60b3f502ad86f97f03e015b7a371d 513 Gene3D G3DSA:1.10.287.950 279 483 5.2E-56 T 26-04-2016 RGE_RS15170 79f60b3f502ad86f97f03e015b7a371d 513 SUPERFAMILY SSF58104 245 512 4.19E-64 T 26-04-2016 RGE_RS15170 79f60b3f502ad86f97f03e015b7a371d 513 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 165 1.0E-6 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS15170 79f60b3f502ad86f97f03e015b7a371d 513 Pfam PF00672 HAMP domain 191 260 1.7E-10 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 SUPERFAMILY SSF52540 304 586 1.36E-55 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 SUPERFAMILY SSF50249 15 161 1.2E-22 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 Gene3D G3DSA:2.40.50.140 40 132 2.1E-17 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 SMART SM00487 252 446 2.3E-29 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 Pfam PF00270 DEAD/DEAH box helicase 277 421 5.3E-15 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 Pfam PF17191 RecG wedge domain 16 159 1.3E-7 T 26-04-2016 IPR033454 RecG, wedge domain RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 Pfam PF00271 Helicase conserved C-terminal domain 455 574 2.5E-18 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 SMART SM00490 491 575 2.8E-18 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 PANTHER PTHR24031 612 657 2.6E-117 T 26-04-2016 RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 PANTHER PTHR24031 256 269 2.6E-117 T 26-04-2016 RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 PANTHER PTHR24031 209 229 2.6E-117 T 26-04-2016 RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 PANTHER PTHR24031 286 589 2.6E-117 T 26-04-2016 RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 PANTHER PTHR24031:SF249 612 657 2.6E-117 T 26-04-2016 RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 PANTHER PTHR24031:SF249 256 269 2.6E-117 T 26-04-2016 RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 PANTHER PTHR24031:SF249 209 229 2.6E-117 T 26-04-2016 RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 PANTHER PTHR24031:SF249 286 589 2.6E-117 T 26-04-2016 RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 27 650 1.3E-214 T 26-04-2016 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 Gene3D G3DSA:3.40.50.300 243 440 1.2E-52 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00475 cb550e42b06659de513bf29b9d9d6703 679 Gene3D G3DSA:3.40.50.300 441 623 7.7E-47 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 Pfam PF00512 His Kinase A (phospho-acceptor) domain 296 364 8.3E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 Pfam PF08447 PAS fold 59 140 4.3E-20 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 Pfam PF08447 PAS fold 187 266 3.5E-14 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 Gene3D G3DSA:3.30.450.20 158 291 1.9E-19 T 26-04-2016 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 Gene3D G3DSA:3.30.450.20 29 157 2.4E-28 T 26-04-2016 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 SMART SM00086 237 277 0.054 T 26-04-2016 IPR001610 PAC motif RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 SMART SM00086 104 147 4.4E-7 T 26-04-2016 IPR001610 PAC motif RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 SUPERFAMILY SSF55785 38 149 5.33E-18 T 26-04-2016 IPR000014 PAS domain RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 SMART SM00388 296 364 7.3E-21 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 PANTHER PTHR24423 27 519 1.4E-113 T 26-04-2016 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 SMART SM00387 410 521 2.8E-35 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 462 1.2E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 519 1.2E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 466 476 1.2E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 482 500 1.2E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 SMART SM00091 159 231 12.0 T 26-04-2016 IPR000014 PAS domain RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 SMART SM00091 29 98 2.1 T 26-04-2016 IPR000014 PAS domain RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 SUPERFAMILY SSF47384 285 365 2.94E-21 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 75 150 3.4E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 184 283 2.3E-11 T 26-04-2016 IPR000014 PAS domain RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 411 520 1.1E-23 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 Gene3D G3DSA:3.30.565.10 366 520 4.3E-42 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 SUPERFAMILY SSF55785 184 285 7.41E-16 T 26-04-2016 IPR000014 PAS domain RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 Gene3D G3DSA:1.10.287.130 292 360 3.1E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS00790 d1c406a6de8d187b46d649edcbce2b9e 521 SUPERFAMILY SSF55874 354 520 5.37E-44 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00340 bd8918473168d8fbc8820b952a4a5fc1 487 PANTHER PTHR30624:SF4 17 487 5.6E-217 T 26-04-2016 RGE_RS00340 bd8918473168d8fbc8820b952a4a5fc1 487 PIRSF PIRSF004919 24 487 2.2E-136 T 26-04-2016 IPR025502 TldD KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS00340 bd8918473168d8fbc8820b952a4a5fc1 487 Pfam PF01523 Putative modulator of DNA gyrase 44 338 1.1E-66 T 26-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS00340 bd8918473168d8fbc8820b952a4a5fc1 487 PANTHER PTHR30624 17 487 5.6E-217 T 26-04-2016 RGE_RS00340 bd8918473168d8fbc8820b952a4a5fc1 487 SUPERFAMILY SSF111283 28 486 2.35E-135 T 26-04-2016 RGE_RS13095 496618c12c3bd8b57bd2ffa8f3700abe 237 SUPERFAMILY SSF56784 21 230 9.07E-45 T 26-04-2016 IPR023214 HAD-like domain RGE_RS13095 496618c12c3bd8b57bd2ffa8f3700abe 237 Gene3D G3DSA:1.10.150.210 36 87 1.0E-22 T 26-04-2016 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|UniPathway: UPA00135 RGE_RS13095 496618c12c3bd8b57bd2ffa8f3700abe 237 Pfam PF12710 haloacid dehalogenase-like hydrolase 27 200 2.5E-19 T 26-04-2016 RGE_RS13095 496618c12c3bd8b57bd2ffa8f3700abe 237 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 26 201 6.3E-30 T 26-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 RGE_RS13095 496618c12c3bd8b57bd2ffa8f3700abe 237 PANTHER PTHR10000 25 237 2.4E-72 T 26-04-2016 RGE_RS13095 496618c12c3bd8b57bd2ffa8f3700abe 237 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 24 234 1.1E-62 T 26-04-2016 RGE_RS13095 496618c12c3bd8b57bd2ffa8f3700abe 237 Gene3D G3DSA:3.40.50.1000 88 221 1.3E-35 T 26-04-2016 IPR023214 HAD-like domain RGE_RS13095 496618c12c3bd8b57bd2ffa8f3700abe 237 PANTHER PTHR10000:SF7 25 237 2.4E-72 T 26-04-2016 RGE_RS22095 e6c7aaa2fcfb775e7dd4d22b46d5d0d1 173 SUPERFAMILY SSF101307 10 166 2.49E-30 T 26-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RGE_RS22095 e6c7aaa2fcfb775e7dd4d22b46d5d0d1 173 PIRSF PIRSF006162 6 173 5.2E-34 T 26-04-2016 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RGE_RS22095 e6c7aaa2fcfb775e7dd4d22b46d5d0d1 173 Pfam PF04608 Phosphatidylglycerophosphatase A 16 167 1.4E-45 T 26-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RGE_RS22095 e6c7aaa2fcfb775e7dd4d22b46d5d0d1 173 PANTHER PTHR36305 2 172 5.8E-36 T 26-04-2016 RGE_RS10550 3d6f981e5707c3b904c8857c9efd5371 317 PANTHER PTHR33608:SF5 9 297 9.2E-56 T 26-04-2016 RGE_RS10550 3d6f981e5707c3b904c8857c9efd5371 317 Gene3D G3DSA:3.40.50.410 80 189 5.9E-4 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS10550 3d6f981e5707c3b904c8857c9efd5371 317 Pfam PF01882 Protein of unknown function DUF58 36 120 3.1E-20 T 26-04-2016 IPR002881 Domain of unknown function DUF58 RGE_RS10550 3d6f981e5707c3b904c8857c9efd5371 317 PANTHER PTHR33608 9 297 9.2E-56 T 26-04-2016 RGE_RS10550 3d6f981e5707c3b904c8857c9efd5371 317 SUPERFAMILY SSF53300 79 202 5.87E-11 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS23350 08b7f34053c6c1f04801c341dd030065 411 SUPERFAMILY SSF50985 121 397 8.5E-43 T 26-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RGE_RS23350 08b7f34053c6c1f04801c341dd030065 411 Pfam PF13540 Regulator of chromosome condensation (RCC1) repeat 360 389 1.5E-6 T 26-04-2016 RGE_RS23350 08b7f34053c6c1f04801c341dd030065 411 PANTHER PTHR22870 161 404 2.3E-26 T 26-04-2016 RGE_RS23350 08b7f34053c6c1f04801c341dd030065 411 PANTHER PTHR22870 72 119 2.3E-26 T 26-04-2016 RGE_RS23350 08b7f34053c6c1f04801c341dd030065 411 Gene3D G3DSA:2.130.10.30 72 255 2.0E-20 T 26-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RGE_RS23350 08b7f34053c6c1f04801c341dd030065 411 Gene3D G3DSA:2.130.10.30 260 397 4.0E-31 T 26-04-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II RGE_RS23350 08b7f34053c6c1f04801c341dd030065 411 PANTHER PTHR22870:SF169 161 404 2.3E-26 T 26-04-2016 RGE_RS23350 08b7f34053c6c1f04801c341dd030065 411 PANTHER PTHR22870:SF169 72 119 2.3E-26 T 26-04-2016 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 Gene3D G3DSA:3.30.540.10 7 207 6.6E-72 T 26-04-2016 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 285 297 - T 26-04-2016 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 191 214 2.8E-61 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 32 59 2.8E-61 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 74 100 2.8E-61 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 319 344 2.8E-61 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 160 183 2.8E-61 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 217 244 2.8E-61 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 Gene3D G3DSA:3.40.190.80 209 344 2.9E-52 T 26-04-2016 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 PANTHER PTHR11556 7 360 9.1E-154 T 26-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 SUPERFAMILY SSF56655 5 343 2.02E-106 T 26-04-2016 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 8 206 2.0E-55 T 26-04-2016 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 7 345 45.416 T 26-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 PIRSF PIRSF500210 3 348 1.2E-122 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS17570 0b54501921b1ce107a96bcc372c6d7ad 364 PIRSF PIRSF000904 3 349 4.5E-121 T 26-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 PRINTS PR00145 Argininosuccinate lyase family signature 284 300 7.0E-67 T 26-04-2016 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 PRINTS PR00145 Argininosuccinate lyase family signature 110 132 7.0E-67 T 26-04-2016 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 PRINTS PR00145 Argininosuccinate lyase family signature 319 338 7.0E-67 T 26-04-2016 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 PRINTS PR00145 Argininosuccinate lyase family signature 240 264 7.0E-67 T 26-04-2016 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 PRINTS PR00145 Argininosuccinate lyase family signature 202 218 7.0E-67 T 26-04-2016 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 PRINTS PR00145 Argininosuccinate lyase family signature 151 171 7.0E-67 T 26-04-2016 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 PRINTS PR00149 Fumarate lyase superfamily signature 156 174 2.9E-26 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 PRINTS PR00149 Fumarate lyase superfamily signature 284 300 2.9E-26 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 PRINTS PR00149 Fumarate lyase superfamily signature 240 267 2.9E-26 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 PRINTS PR00149 Fumarate lyase superfamily signature 111 129 2.9E-26 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 PANTHER PTHR11444:SF3 13 464 4.2E-225 T 26-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 TIGRFAM TIGR00838 argH: argininosuccinate lyase 13 464 1.0E-188 T 26-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 Gene3D G3DSA:1.10.275.10 11 115 2.3E-37 T 26-04-2016 IPR024083 Fumarase/histidase, N-terminal RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 Gene3D G3DSA:1.20.200.10 116 382 6.6E-109 T 26-04-2016 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 Pfam PF14698 Argininosuccinate lyase C-terminal 372 439 2.5E-23 T 26-04-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 SUPERFAMILY SSF48557 13 464 8.95E-151 T 26-04-2016 IPR008948 L-Aspartase-like GO:0003824 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 Pfam PF00206 Lyase 17 309 2.2E-72 T 26-04-2016 IPR022761 Fumarate lyase, N-terminal RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 ProSitePatterns PS00163 Fumarate lyases signature. 284 293 - T 26-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 PANTHER PTHR11444 13 464 4.2E-225 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 Gene3D G3DSA:1.10.40.30 383 441 1.0E-29 T 26-04-2016 RGE_RS17840 609fd7a7c63465bdc248012c2638866b 466 Hamap MF_00006 Argininosuccinate lyase [argH]. 11 462 43.572 T 26-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS08725 e2f5af615b3404ed9ebcbe1ebf8109cf 370 Gene3D G3DSA:3.30.420.10 125 288 6.2E-37 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS08725 e2f5af615b3404ed9ebcbe1ebf8109cf 370 PANTHER PTHR24559:SF180 130 280 2.5E-12 T 26-04-2016 RGE_RS08725 e2f5af615b3404ed9ebcbe1ebf8109cf 370 SUPERFAMILY SSF53098 125 292 7.08E-33 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS08725 e2f5af615b3404ed9ebcbe1ebf8109cf 370 Pfam PF13683 Integrase core domain 222 287 1.5E-21 T 26-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RGE_RS08725 e2f5af615b3404ed9ebcbe1ebf8109cf 370 Gene3D G3DSA:1.10.10.60 10 55 7.9E-6 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS08725 e2f5af615b3404ed9ebcbe1ebf8109cf 370 Pfam PF13565 Homeodomain-like domain 39 107 2.6E-11 T 26-04-2016 RGE_RS08725 e2f5af615b3404ed9ebcbe1ebf8109cf 370 SUPERFAMILY SSF46689 10 111 1.02E-13 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS08725 e2f5af615b3404ed9ebcbe1ebf8109cf 370 PANTHER PTHR24559 130 280 2.5E-12 T 26-04-2016 RGE_RS06815 69ee0d766e177ed4083add1beac6a8f8 293 PANTHER PTHR21363 6 287 8.4E-66 T 26-04-2016 RGE_RS06815 69ee0d766e177ed4083add1beac6a8f8 293 SUPERFAMILY SSF48179 175 283 3.29E-31 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS06815 69ee0d766e177ed4083add1beac6a8f8 293 SUPERFAMILY SSF51735 4 171 2.12E-44 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06815 69ee0d766e177ed4083add1beac6a8f8 293 Pfam PF02153 Prephenate dehydrogenase 17 273 2.0E-70 T 26-04-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 RGE_RS06815 69ee0d766e177ed4083add1beac6a8f8 293 Gene3D G3DSA:3.40.50.720 2 181 5.1E-39 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06815 69ee0d766e177ed4083add1beac6a8f8 293 PANTHER PTHR21363:SF0 6 287 8.4E-66 T 26-04-2016 RGE_RS16780 f0aa9dd404d11a5739ed6d9109fe362e 324 PANTHER PTHR11935:SF28 16 241 1.6E-50 T 26-04-2016 RGE_RS16780 f0aa9dd404d11a5739ed6d9109fe362e 324 Gene3D G3DSA:3.60.15.10 16 244 8.1E-37 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS16780 f0aa9dd404d11a5739ed6d9109fe362e 324 SMART SM00849 29 234 2.0E-27 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS16780 f0aa9dd404d11a5739ed6d9109fe362e 324 Pfam PF00753 Metallo-beta-lactamase superfamily 31 234 5.3E-23 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS16780 f0aa9dd404d11a5739ed6d9109fe362e 324 SUPERFAMILY SSF56281 13 287 3.14E-47 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS16780 f0aa9dd404d11a5739ed6d9109fe362e 324 PANTHER PTHR11935 16 241 1.6E-50 T 26-04-2016 RGE_RS21130 eeef41a3935de85b2c38fc84849ff085 471 PANTHER PTHR11911:SF68 15 156 1.0E-15 T 26-04-2016 RGE_RS21130 eeef41a3935de85b2c38fc84849ff085 471 SMART SM00116 23 69 1.0 T 26-04-2016 IPR000644 CBS domain RGE_RS21130 eeef41a3935de85b2c38fc84849ff085 471 SMART SM00116 86 133 4.3E-6 T 26-04-2016 IPR000644 CBS domain RGE_RS21130 eeef41a3935de85b2c38fc84849ff085 471 Pfam PF00571 CBS domain 79 133 4.4E-6 T 26-04-2016 IPR000644 CBS domain RGE_RS21130 eeef41a3935de85b2c38fc84849ff085 471 Gene3D G3DSA:3.10.580.10 15 133 3.8E-19 T 26-04-2016 RGE_RS21130 eeef41a3935de85b2c38fc84849ff085 471 SUPERFAMILY SSF54631 9 134 2.53E-21 T 26-04-2016 RGE_RS21130 eeef41a3935de85b2c38fc84849ff085 471 PANTHER PTHR11911 15 156 1.0E-15 T 26-04-2016 RGE_RS21130 eeef41a3935de85b2c38fc84849ff085 471 Pfam PF03445 Putative nucleotidyltransferase DUF294 158 285 2.1E-40 T 26-04-2016 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 RGE_RS21130 eeef41a3935de85b2c38fc84849ff085 471 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 326 466 2.4E-41 T 26-04-2016 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding RGE_RS01665 fc3efe89243f844735d8b9b73aaf1f9d 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.5E-53 T 26-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RGE_RS01665 fc3efe89243f844735d8b9b73aaf1f9d 122 SUPERFAMILY SSF50193 1 122 5.1E-50 T 26-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RGE_RS01665 fc3efe89243f844735d8b9b73aaf1f9d 122 Gene3D G3DSA:2.40.150.20 1 122 1.6E-53 T 26-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RGE_RS01665 fc3efe89243f844735d8b9b73aaf1f9d 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 26-04-2016 IPR019972 Ribosomal protein L14P, conserved site RGE_RS01665 fc3efe89243f844735d8b9b73aaf1f9d 122 PANTHER PTHR11761 1 122 1.6E-71 T 26-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RGE_RS01665 fc3efe89243f844735d8b9b73aaf1f9d 122 SMART SM01374 1 122 2.1E-82 T 26-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RGE_RS01665 fc3efe89243f844735d8b9b73aaf1f9d 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.593 T 26-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RGE_RS01665 fc3efe89243f844735d8b9b73aaf1f9d 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.4E-56 T 26-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 RGE_RS10795 14616abd3e5b7ba682648c225aad757c 313 SUPERFAMILY SSF53474 28 299 8.99E-32 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS10795 14616abd3e5b7ba682648c225aad757c 313 PANTHER PTHR10992 32 300 1.4E-15 T 26-04-2016 RGE_RS10795 14616abd3e5b7ba682648c225aad757c 313 Gene3D G3DSA:3.40.50.1820 30 299 7.5E-31 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS10795 14616abd3e5b7ba682648c225aad757c 313 Pfam PF12697 Alpha/beta hydrolase family 41 223 3.4E-10 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 SUPERFAMILY SSF50993 27 395 9.42E-30 T 26-04-2016 RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 SUPERFAMILY SSF53474 468 726 5.0E-44 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 30 221 4.8E-14 T 26-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 Gene3D G3DSA:3.40.50.1820 431 726 1.9E-82 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 637 652 3.7E-35 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 552 571 3.7E-35 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 656 678 3.7E-35 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 524 548 3.7E-35 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 498 516 3.7E-35 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 582 602 3.7E-35 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 PANTHER PTHR11757 1 726 8.8E-116 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 Gene3D G3DSA:2.130.10.120 107 409 3.4E-17 T 26-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RGE_RS22940 a43856d3c3ef674193f698849fbf7331 730 Pfam PF00326 Prolyl oligopeptidase family 513 727 5.6E-53 T 26-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 SUPERFAMILY SSF69279 404 418 3.74E-14 T 26-04-2016 RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 SUPERFAMILY SSF69279 231 370 3.74E-14 T 26-04-2016 RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 SUPERFAMILY SSF69255 435 536 8.63E-25 T 26-04-2016 RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 SUPERFAMILY SSF69279 23 217 1.47E-45 T 26-04-2016 RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 746 902 2.9E-39 T 26-04-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 23 545 2.1E-91 T 26-04-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 Gene3D G3DSA:2.40.50.230 441 536 3.0E-31 T 26-04-2016 IPR006531 Gp5 N-terminal RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 PANTHER PTHR32305 436 539 9.9E-65 T 26-04-2016 RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 PANTHER PTHR32305 1 420 9.9E-65 T 26-04-2016 RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 PANTHER PTHR32305:SF7 436 539 9.9E-65 T 26-04-2016 RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 PANTHER PTHR32305:SF7 1 420 9.9E-65 T 26-04-2016 RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 Pfam PF05954 Phage late control gene D protein (GPD) 54 369 2.3E-79 T 26-04-2016 RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 56 540 1.4E-76 T 26-04-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 598 703 2.0E-32 T 26-04-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain RGE_RS12490 4fba15397b8ea4fb4c9eba41069d94b0 1016 Gene3D G3DSA:3.55.50.10 116 221 1.7E-26 T 26-04-2016 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 SUPERFAMILY SSF53244 329 485 5.95E-50 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 23 483 3.3E-141 T 26-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 Pfam PF01225 Mur ligase family, catalytic domain 25 68 4.1E-6 T 26-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 PANTHER PTHR23135 24 490 1.3E-165 T 26-04-2016 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 SUPERFAMILY SSF63418 15 98 3.53E-17 T 26-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 Pfam PF02875 Mur ligase family, glutamate ligase domain 329 412 9.9E-23 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 Gene3D G3DSA:3.40.1390.10 21 98 2.0E-16 T 26-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 Gene3D G3DSA:3.40.1190.10 100 332 8.3E-79 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 SUPERFAMILY SSF53623 100 327 9.96E-70 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 483 31.487 T 26-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 PANTHER PTHR23135:SF4 24 490 1.3E-165 T 26-04-2016 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 Gene3D G3DSA:3.90.190.20 333 476 3.5E-56 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS04660 edbf401ac50c2ad1bb6202abd4ff1eef 491 Pfam PF08245 Mur ligase middle domain 110 307 3.3E-43 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS16070 b20ee59be8b41b31e0d7c0bbbb495586 661 PANTHER PTHR11669:SF0 1 390 2.4E-149 T 26-04-2016 RGE_RS16070 b20ee59be8b41b31e0d7c0bbbb495586 661 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 237 365 2.8E-22 T 26-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 RGE_RS16070 b20ee59be8b41b31e0d7c0bbbb495586 661 Gene3D G3DSA:3.40.50.300 4 171 7.5E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16070 b20ee59be8b41b31e0d7c0bbbb495586 661 Gene3D G3DSA:1.20.272.10 248 365 5.6E-33 T 26-04-2016 RGE_RS16070 b20ee59be8b41b31e0d7c0bbbb495586 661 Gene3D G3DSA:1.10.8.60 172 247 4.3E-28 T 26-04-2016 RGE_RS16070 b20ee59be8b41b31e0d7c0bbbb495586 661 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 360 1.4E-116 T 26-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 RGE_RS16070 b20ee59be8b41b31e0d7c0bbbb495586 661 SMART SM00382 37 184 1.2E-7 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS16070 b20ee59be8b41b31e0d7c0bbbb495586 661 PANTHER PTHR11669 1 390 2.4E-149 T 26-04-2016 RGE_RS16070 b20ee59be8b41b31e0d7c0bbbb495586 661 SUPERFAMILY SSF48019 249 366 5.61E-25 T 26-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RGE_RS16070 b20ee59be8b41b31e0d7c0bbbb495586 661 Pfam PF13177 DNA polymerase III, delta subunit 20 183 7.8E-44 T 26-04-2016 RGE_RS16070 b20ee59be8b41b31e0d7c0bbbb495586 661 SUPERFAMILY SSF52540 33 227 5.55E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 SUPERFAMILY SSF52172 20 151 9.39E-40 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 PANTHER PTHR26402 257 309 3.4E-53 T 26-04-2016 RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 PANTHER PTHR26402 18 149 3.4E-53 T 26-04-2016 RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 Pfam PF00072 Response regulator receiver domain 20 131 6.0E-26 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 Gene3D G3DSA:3.40.50.2300 20 145 8.6E-39 T 26-04-2016 RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 Pfam PF00196 Bacterial regulatory proteins, luxR family 261 315 3.5E-17 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 SMART SM00421 258 315 1.2E-20 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 291 303 1.5E-10 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 261 275 1.5E-10 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 275 291 1.5E-10 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 Gene3D G3DSA:1.10.10.10 260 318 4.9E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 SUPERFAMILY SSF46894 253 316 5.1E-18 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 SMART SM00448 18 131 7.9E-36 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 PANTHER PTHR26402:SF50 257 309 3.4E-53 T 26-04-2016 RGE_RS19555 e08bb80433c9508a21c09348a5839a74 326 PANTHER PTHR26402:SF50 18 149 3.4E-53 T 26-04-2016 RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 Pfam PF13247 4Fe-4S dicluster domain 247 281 1.5E-7 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 Pfam PF13247 4Fe-4S dicluster domain 166 227 8.5E-13 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 Gene3D G3DSA:3.30.70.20 103 181 1.4E-11 T 26-04-2016 RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 Gene3D G3DSA:3.30.70.20 247 313 6.7E-20 T 26-04-2016 RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 PANTHER PTHR11938 243 289 1.4E-46 T 26-04-2016 RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 PANTHER PTHR11938 159 223 1.4E-46 T 26-04-2016 RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 PANTHER PTHR11938 98 139 1.4E-46 T 26-04-2016 RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 Gene3D G3DSA:3.30.70.20 182 226 8.2E-25 T 26-04-2016 RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 SUPERFAMILY SSF54862 103 314 3.77E-58 T 26-04-2016 RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 204 215 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 PANTHER PTHR11938:SF86 243 289 1.4E-46 T 26-04-2016 RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 PANTHER PTHR11938:SF86 159 223 1.4E-46 T 26-04-2016 RGE_RS16450 d51d8924164b271716d4258f795beb3c 322 PANTHER PTHR11938:SF86 98 139 1.4E-46 T 26-04-2016 RGE_RS12680 44245a51b7f33d76efcb27f4a47ed77a 339 PANTHER PTHR11669:SF8 15 94 3.4E-46 T 26-04-2016 RGE_RS12680 44245a51b7f33d76efcb27f4a47ed77a 339 PANTHER PTHR11669:SF8 119 230 3.4E-46 T 26-04-2016 RGE_RS12680 44245a51b7f33d76efcb27f4a47ed77a 339 Gene3D G3DSA:3.40.50.300 21 194 1.4E-43 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12680 44245a51b7f33d76efcb27f4a47ed77a 339 SUPERFAMILY SSF52540 27 231 4.81E-37 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12680 44245a51b7f33d76efcb27f4a47ed77a 339 Pfam PF13177 DNA polymerase III, delta subunit 30 194 2.0E-36 T 26-04-2016 RGE_RS12680 44245a51b7f33d76efcb27f4a47ed77a 339 PANTHER PTHR11669 15 94 3.4E-46 T 26-04-2016 RGE_RS12680 44245a51b7f33d76efcb27f4a47ed77a 339 PANTHER PTHR11669 119 230 3.4E-46 T 26-04-2016 RGE_RS22755 382df8cda098a083d56354e01e0895cd 708 Pfam PF03717 Penicillin-binding Protein dimerisation domain 61 239 7.3E-43 T 26-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RGE_RS22755 382df8cda098a083d56354e01e0895cd 708 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 17 615 1.5E-225 T 26-04-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 RGE_RS22755 382df8cda098a083d56354e01e0895cd 708 PANTHER PTHR30627:SF2 2 623 1.5E-206 T 26-04-2016 RGE_RS22755 382df8cda098a083d56354e01e0895cd 708 PANTHER PTHR30627 2 623 1.5E-206 T 26-04-2016 RGE_RS22755 382df8cda098a083d56354e01e0895cd 708 Gene3D G3DSA:3.90.1310.10 130 253 2.2E-35 T 26-04-2016 RGE_RS22755 382df8cda098a083d56354e01e0895cd 708 SUPERFAMILY SSF56601 255 615 1.03E-96 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS22755 382df8cda098a083d56354e01e0895cd 708 SUPERFAMILY SSF56519 53 254 3.14E-47 T 26-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RGE_RS22755 382df8cda098a083d56354e01e0895cd 708 Pfam PF00905 Penicillin binding protein transpeptidase domain 272 612 4.6E-69 T 26-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RGE_RS22755 382df8cda098a083d56354e01e0895cd 708 Gene3D G3DSA:3.40.710.10 254 615 7.9E-105 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS19970 1e237d842feab4c6d125da9f5897dec3 131 PANTHER PTHR40261:SF2 33 112 3.0E-21 T 26-04-2016 RGE_RS19970 1e237d842feab4c6d125da9f5897dec3 131 Pfam PF00355 Rieske [2Fe-2S] domain 19 95 1.3E-8 T 26-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RGE_RS19970 1e237d842feab4c6d125da9f5897dec3 131 SUPERFAMILY SSF50022 24 119 7.46E-20 T 26-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RGE_RS19970 1e237d842feab4c6d125da9f5897dec3 131 PANTHER PTHR40261 33 112 3.0E-21 T 26-04-2016 RGE_RS19970 1e237d842feab4c6d125da9f5897dec3 131 Gene3D G3DSA:2.102.10.10 7 118 1.2E-15 T 26-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RGE_RS21435 060fb7ce0e3f6e528f54377e3a0c0dc3 160 PANTHER PTHR30154 1 160 5.1E-60 T 26-04-2016 RGE_RS21435 060fb7ce0e3f6e528f54377e3a0c0dc3 160 SUPERFAMILY SSF54909 67 160 1.47E-22 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS21435 060fb7ce0e3f6e528f54377e3a0c0dc3 160 PANTHER PTHR30154:SF28 1 160 5.1E-60 T 26-04-2016 RGE_RS21435 060fb7ce0e3f6e528f54377e3a0c0dc3 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 1.6E-14 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS21435 060fb7ce0e3f6e528f54377e3a0c0dc3 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 1.6E-14 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS21435 060fb7ce0e3f6e528f54377e3a0c0dc3 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 1.6E-14 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS21435 060fb7ce0e3f6e528f54377e3a0c0dc3 160 Pfam PF13412 Winged helix-turn-helix DNA-binding 7 53 9.8E-17 T 26-04-2016 RGE_RS21435 060fb7ce0e3f6e528f54377e3a0c0dc3 160 Gene3D G3DSA:1.10.10.10 8 59 8.8E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS21435 060fb7ce0e3f6e528f54377e3a0c0dc3 160 SMART SM00344 7 120 1.2E-35 T 26-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RGE_RS21435 060fb7ce0e3f6e528f54377e3a0c0dc3 160 SUPERFAMILY SSF46785 7 66 1.66E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS21435 060fb7ce0e3f6e528f54377e3a0c0dc3 160 Pfam PF01037 Lrp/AsnC ligand binding domain 75 150 2.6E-24 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS21435 060fb7ce0e3f6e528f54377e3a0c0dc3 160 Gene3D G3DSA:3.30.70.920 60 148 3.0E-34 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS04855 82a22603fd2e35b51b572f920f8e12a0 218 PANTHER PTHR13707 1 217 4.1E-105 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS04855 82a22603fd2e35b51b572f920f8e12a0 218 SUPERFAMILY SSF100950 2 215 3.35E-71 T 26-04-2016 RGE_RS04855 82a22603fd2e35b51b572f920f8e12a0 218 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 4 206 3.0E-90 T 26-04-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 RGE_RS04855 82a22603fd2e35b51b572f920f8e12a0 218 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 43 51 - T 26-04-2016 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 RGE_RS04855 82a22603fd2e35b51b572f920f8e12a0 218 Gene3D G3DSA:3.40.810.20 3 212 1.7E-83 T 26-04-2016 RGE_RS04855 82a22603fd2e35b51b572f920f8e12a0 218 Pfam PF01144 Coenzyme A transferase 7 199 5.6E-36 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS04855 82a22603fd2e35b51b572f920f8e12a0 218 SMART SM00882 5 200 8.7E-65 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS03830 665f88198c285bab8035c7a7ac17d602 171 Pfam PF10986 Protein of unknown function (DUF2796) 24 98 1.0E-19 T 26-04-2016 IPR021253 Protein of unknown function DUF2796 RGE_RS03830 665f88198c285bab8035c7a7ac17d602 171 Pfam PF10986 Protein of unknown function (DUF2796) 107 162 2.9E-10 T 26-04-2016 IPR021253 Protein of unknown function DUF2796 RGE_RS01720 35e4ed718002e96f4d03a8a0a6667d54 72 PANTHER PTHR33370 1 72 1.3E-46 T 26-04-2016 RGE_RS01720 35e4ed718002e96f4d03a8a0a6667d54 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 6.4E-26 T 26-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 RGE_RS01720 35e4ed718002e96f4d03a8a0a6667d54 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.8 T 26-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RGE_RS01720 35e4ed718002e96f4d03a8a0a6667d54 72 Gene3D G3DSA:2.40.50.140 1 72 5.9E-37 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS01720 35e4ed718002e96f4d03a8a0a6667d54 72 SUPERFAMILY SSF50249 1 70 1.86E-26 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS01720 35e4ed718002e96f4d03a8a0a6667d54 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 2.4E-36 T 26-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RGE_RS03100 2f70f9b7f16c118227189018e625634b 143 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 73 141 4.1E-23 T 26-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 RGE_RS03100 2f70f9b7f16c118227189018e625634b 143 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 1 68 1.3E-26 T 26-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 RGE_RS03100 2f70f9b7f16c118227189018e625634b 143 PANTHER PTHR30432 1 142 1.2E-12 T 26-04-2016 RGE_RS03100 2f70f9b7f16c118227189018e625634b 143 SUPERFAMILY SSF50331 1 71 3.89E-22 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS03100 2f70f9b7f16c118227189018e625634b 143 Pfam PF03459 TOBE domain 4 66 3.2E-20 T 26-04-2016 IPR005116 Transport-associated OB, type 1 RGE_RS03100 2f70f9b7f16c118227189018e625634b 143 Pfam PF03459 TOBE domain 76 136 5.7E-17 T 26-04-2016 IPR005116 Transport-associated OB, type 1 RGE_RS03100 2f70f9b7f16c118227189018e625634b 143 Gene3D G3DSA:2.40.50.100 1 69 8.8E-29 T 26-04-2016 RGE_RS03100 2f70f9b7f16c118227189018e625634b 143 Gene3D G3DSA:2.40.50.100 72 141 3.9E-29 T 26-04-2016 RGE_RS03100 2f70f9b7f16c118227189018e625634b 143 SUPERFAMILY SSF50331 73 141 2.31E-21 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS14185 b6edcbd730d5cb2865a13b374283aeb0 144 PANTHER PTHR38767 8 144 8.7E-18 T 26-04-2016 RGE_RS14185 b6edcbd730d5cb2865a13b374283aeb0 144 Gene3D G3DSA:3.40.50.10110 7 140 5.1E-35 T 26-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RGE_RS14185 b6edcbd730d5cb2865a13b374283aeb0 144 SUPERFAMILY SSF102400 3 140 4.84E-32 T 26-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RGE_RS14185 b6edcbd730d5cb2865a13b374283aeb0 144 Pfam PF04364 DNA polymerase III chi subunit, HolC 3 135 9.3E-32 T 26-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RGE_RS15940 64da733031b01cc8b2e9f9a25e568a26 276 SUPERFAMILY SSF53335 95 241 2.13E-16 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS15940 64da733031b01cc8b2e9f9a25e568a26 276 Pfam PF08241 Methyltransferase domain 96 141 3.6E-8 T 26-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RGE_RS15940 64da733031b01cc8b2e9f9a25e568a26 276 PANTHER PTHR10108 100 196 2.6E-16 T 26-04-2016 RGE_RS15940 64da733031b01cc8b2e9f9a25e568a26 276 PANTHER PTHR10108:SF836 100 196 2.6E-16 T 26-04-2016 RGE_RS15940 64da733031b01cc8b2e9f9a25e568a26 276 Gene3D G3DSA:3.40.50.150 95 242 5.3E-14 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS22360 3670d8037e4536c7b52f9dd55475244b 329 PANTHER PTHR34296 1 318 2.9E-51 T 26-04-2016 RGE_RS22360 3670d8037e4536c7b52f9dd55475244b 329 SUPERFAMILY SSF53822 33 226 7.18E-6 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS22360 3670d8037e4536c7b52f9dd55475244b 329 Gene3D G3DSA:3.40.50.2300 132 286 4.8E-46 T 26-04-2016 RGE_RS22360 3670d8037e4536c7b52f9dd55475244b 329 Pfam PF02608 Basic membrane protein 43 266 1.1E-39 T 26-04-2016 IPR003760 Basic membrane lipoprotein GO:0005886 RGE_RS13275 3128924d9c8594cea77e210227447864 767 Pfam PF07244 Surface antigen variable number repeat 276 350 2.1E-9 T 26-04-2016 IPR010827 Surface antigen variable number GO:0019867 RGE_RS13275 3128924d9c8594cea77e210227447864 767 Pfam PF07244 Surface antigen variable number repeat 357 431 5.5E-13 T 26-04-2016 IPR010827 Surface antigen variable number GO:0019867 RGE_RS13275 3128924d9c8594cea77e210227447864 767 Pfam PF07244 Surface antigen variable number repeat 102 182 1.8E-7 T 26-04-2016 IPR010827 Surface antigen variable number GO:0019867 RGE_RS13275 3128924d9c8594cea77e210227447864 767 Pfam PF07244 Surface antigen variable number repeat 186 273 7.3E-16 T 26-04-2016 IPR010827 Surface antigen variable number GO:0019867 RGE_RS13275 3128924d9c8594cea77e210227447864 767 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 34 767 4.2E-242 T 26-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RGE_RS13275 3128924d9c8594cea77e210227447864 767 Gene3D G3DSA:2.40.160.50 405 767 4.0E-21 T 26-04-2016 RGE_RS13275 3128924d9c8594cea77e210227447864 767 PIRSF PIRSF006076 5 767 3.6E-229 T 26-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RGE_RS13275 3128924d9c8594cea77e210227447864 767 Pfam PF01103 Surface antigen 458 767 7.3E-70 T 26-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 RGE_RS13275 3128924d9c8594cea77e210227447864 767 PANTHER PTHR12815 15 767 7.8E-212 T 26-04-2016 RGE_RS13275 3128924d9c8594cea77e210227447864 767 PANTHER PTHR12815:SF11 15 767 7.8E-212 T 26-04-2016 RGE_RS13275 3128924d9c8594cea77e210227447864 767 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 12 767 23.755 T 26-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RGE_RS00800 f8ca7309b31ee43cd6c9b505c2f00fc6 307 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 223 - T 26-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS00800 f8ca7309b31ee43cd6c9b505c2f00fc6 307 PANTHER PTHR11825 1 306 3.9E-116 T 26-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS00800 f8ca7309b31ee43cd6c9b505c2f00fc6 307 PANTHER PTHR11825:SF7 1 306 3.9E-116 T 26-04-2016 RGE_RS00800 f8ca7309b31ee43cd6c9b505c2f00fc6 307 Pfam PF01063 Amino-transferase class IV 36 267 9.8E-58 T 26-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS00800 f8ca7309b31ee43cd6c9b505c2f00fc6 307 SUPERFAMILY SSF56752 1 304 4.45E-106 T 26-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS00800 f8ca7309b31ee43cd6c9b505c2f00fc6 307 Gene3D G3DSA:3.20.10.10 134 296 4.0E-57 T 26-04-2016 RGE_RS00800 f8ca7309b31ee43cd6c9b505c2f00fc6 307 Gene3D G3DSA:3.30.470.10 8 130 2.1E-42 T 26-04-2016 RGE_RS00800 f8ca7309b31ee43cd6c9b505c2f00fc6 307 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 307 8.4E-137 T 26-04-2016 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|UniPathway: UPA00047|UniPathway: UPA00048|UniPathway: UPA00049 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 SMART SM00842 9 195 4.9E-89 T 26-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 PIRSF PIRSF003101 1 410 1.5E-135 T 26-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 Gene3D G3DSA:3.90.640.10 234 296 4.4E-17 T 26-04-2016 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 PANTHER PTHR32432:SF4 1 378 3.2E-137 T 26-04-2016 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 SUPERFAMILY SSF53067 7 216 1.27E-52 T 26-04-2016 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 Gene3D G3DSA:3.30.420.40 3 82 1.9E-23 T 26-04-2016 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 Gene3D G3DSA:3.30.420.40 156 208 1.9E-23 T 26-04-2016 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 Pfam PF14450 Cell division protein FtsA 206 373 1.2E-21 T 26-04-2016 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 SUPERFAMILY SSF53067 197 375 3.5E-45 T 26-04-2016 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 PANTHER PTHR32432 1 378 3.2E-137 T 26-04-2016 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 Pfam PF02491 SHS2 domain inserted in FTSA 84 161 1.1E-26 T 26-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 Gene3D G3DSA:3.30.420.40 297 349 3.3E-30 T 26-04-2016 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 Gene3D G3DSA:3.30.420.40 209 233 3.3E-30 T 26-04-2016 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 Gene3D G3DSA:3.30.1490.110 86 155 1.6E-12 T 26-04-2016 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 376 2.5E-133 T 26-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 324 338 - T 26-04-2016 IPR018181 Heat shock protein 70, conserved site RGE_RS04705 f9dc07513de40ca3c6c207f2617b3e19 410 Hamap MF_02033 Cell division protein FtsA [ftsA]. 5 410 28.989 T 26-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 Gene3D G3DSA:3.30.559.10 327 562 4.7E-85 T 26-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 SUPERFAMILY SSF47005 251 291 2.62E-11 T 26-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 Gene3D G3DSA:4.10.320.10 252 298 1.3E-18 T 26-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 Gene3D G3DSA:2.40.50.100 121 195 6.6E-22 T 26-04-2016 RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 Gene3D G3DSA:2.40.50.100 2 94 1.7E-20 T 26-04-2016 RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 SUPERFAMILY SSF51230 119 212 2.3E-23 T 26-04-2016 IPR011053 Single hybrid motif RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 PANTHER PTHR23151:SF68 23 293 1.6E-245 T 26-04-2016 RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 PANTHER PTHR23151:SF68 319 563 1.6E-245 T 26-04-2016 RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 337 563 4.8E-80 T 26-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 SUPERFAMILY SSF51230 2 94 1.31E-22 T 26-04-2016 IPR011053 Single hybrid motif RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 PANTHER PTHR23151 23 293 1.6E-245 T 26-04-2016 RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 PANTHER PTHR23151 319 563 1.6E-245 T 26-04-2016 RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 Pfam PF02817 e3 binding domain 252 287 3.3E-14 T 26-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 SUPERFAMILY SSF52777 326 563 3.11E-84 T 26-04-2016 RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 Pfam PF00364 Biotin-requiring enzyme 122 193 6.7E-21 T 26-04-2016 IPR000089 Biotin/lipoyl attachment RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 Pfam PF00364 Biotin-requiring enzyme 5 75 2.8E-19 T 26-04-2016 IPR000089 Biotin/lipoyl attachment RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 26-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 144 173 - T 26-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RGE_RS11530 202ed3ecae6d6ad550dfed418c275d0a 563 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 101 563 1.8E-192 T 26-04-2016 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 RGE_RS18140 a171314016bd4e923a1eb2ef0a2d5ef6 252 Pfam PF01925 Sulfite exporter TauE/SafE 8 244 3.6E-41 T 26-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RGE_RS18140 a171314016bd4e923a1eb2ef0a2d5ef6 252 PANTHER PTHR30269 1 248 1.4E-77 T 26-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RGE_RS18140 a171314016bd4e923a1eb2ef0a2d5ef6 252 PANTHER PTHR30269:SF0 1 248 1.4E-77 T 26-04-2016 RGE_RS01845 1ce664efb786048e1b042036b35be3a1 414 SUPERFAMILY SSF56024 5 198 7.4E-42 T 26-04-2016 RGE_RS01845 1ce664efb786048e1b042036b35be3a1 414 Gene3D G3DSA:3.30.870.10 206 370 4.0E-35 T 26-04-2016 RGE_RS01845 1ce664efb786048e1b042036b35be3a1 414 Gene3D G3DSA:3.30.870.10 7 194 5.5E-42 T 26-04-2016 RGE_RS01845 1ce664efb786048e1b042036b35be3a1 414 Pfam PF13091 PLD-like domain 215 340 7.6E-27 T 26-04-2016 IPR025202 Phospholipase D-like domain RGE_RS01845 1ce664efb786048e1b042036b35be3a1 414 Pfam PF13091 PLD-like domain 28 138 1.3E-14 T 26-04-2016 IPR025202 Phospholipase D-like domain RGE_RS01845 1ce664efb786048e1b042036b35be3a1 414 Hamap MF_01917 Cardiolipin synthase B [clsB]. 4 384 51.503 T 26-04-2016 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 RGE_RS01845 1ce664efb786048e1b042036b35be3a1 414 PANTHER PTHR21248 3 381 2.0E-104 T 26-04-2016 RGE_RS01845 1ce664efb786048e1b042036b35be3a1 414 SUPERFAMILY SSF56024 178 348 3.81E-41 T 26-04-2016 RGE_RS01845 1ce664efb786048e1b042036b35be3a1 414 SMART SM00155 110 137 3.9E-7 T 26-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RGE_RS01845 1ce664efb786048e1b042036b35be3a1 414 SMART SM00155 286 313 1.5 T 26-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RGE_RS01845 1ce664efb786048e1b042036b35be3a1 414 PANTHER PTHR21248:SF5 3 381 2.0E-104 T 26-04-2016 RGE_RS00550 d72e0342c9efd06822dbd151cec24e0b 506 PANTHER PTHR11699 13 491 8.9E-269 T 26-04-2016 RGE_RS00550 d72e0342c9efd06822dbd151cec24e0b 506 Gene3D G3DSA:3.40.605.10 13 269 1.2E-89 T 26-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RGE_RS00550 d72e0342c9efd06822dbd151cec24e0b 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 283 294 - T 26-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RGE_RS00550 d72e0342c9efd06822dbd151cec24e0b 506 PANTHER PTHR11699:SF188 13 491 8.9E-269 T 26-04-2016 RGE_RS00550 d72e0342c9efd06822dbd151cec24e0b 506 SUPERFAMILY SSF53720 10 490 1.83E-149 T 26-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RGE_RS00550 d72e0342c9efd06822dbd151cec24e0b 506 Gene3D G3DSA:3.40.309.10 270 451 2.1E-66 T 26-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RGE_RS00550 d72e0342c9efd06822dbd151cec24e0b 506 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 14 490 5.7E-209 T 26-04-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 RGE_RS00550 d72e0342c9efd06822dbd151cec24e0b 506 Pfam PF00171 Aldehyde dehydrogenase family 28 486 3.0E-142 T 26-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 Gene3D G3DSA:2.30.40.10 379 407 1.2E-7 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 SUPERFAMILY SSF51338 396 435 1.0E-19 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 SUPERFAMILY SSF51338 34 89 1.0E-19 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 PANTHER PTHR11271:SF33 327 430 3.2E-33 T 26-04-2016 RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 PANTHER PTHR11271:SF33 27 295 3.2E-33 T 26-04-2016 RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 SUPERFAMILY SSF51556 88 281 5.35E-49 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 SUPERFAMILY SSF51556 326 395 5.35E-49 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 Gene3D G3DSA:2.30.40.10 408 436 1.6E-22 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 Gene3D G3DSA:2.30.40.10 37 90 1.6E-22 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 PANTHER PTHR11271 327 430 3.2E-33 T 26-04-2016 RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 PANTHER PTHR11271 27 295 3.2E-33 T 26-04-2016 RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 Pfam PF01979 Amidohydrolase family 85 430 2.5E-18 T 26-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RGE_RS09425 dd5427d576b5394cf4254ddaaaed8a35 442 Gene3D G3DSA:3.20.20.140 91 378 2.1E-51 T 26-04-2016 RGE_RS18535 04aaeba64737914e03efa5f76ee1c5c5 314 Pfam PF03466 LysR substrate binding domain 96 300 2.1E-40 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS18535 04aaeba64737914e03efa5f76ee1c5c5 314 Gene3D G3DSA:3.40.190.10 183 268 3.7E-19 T 26-04-2016 RGE_RS18535 04aaeba64737914e03efa5f76ee1c5c5 314 SUPERFAMILY SSF46785 11 114 1.42E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18535 04aaeba64737914e03efa5f76ee1c5c5 314 PANTHER PTHR30537 3 300 3.2E-86 T 26-04-2016 RGE_RS18535 04aaeba64737914e03efa5f76ee1c5c5 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 70 7.2E-20 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS18535 04aaeba64737914e03efa5f76ee1c5c5 314 SUPERFAMILY SSF53850 97 302 7.42E-41 T 26-04-2016 RGE_RS18535 04aaeba64737914e03efa5f76ee1c5c5 314 Gene3D G3DSA:1.10.10.10 10 94 1.2E-26 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18535 04aaeba64737914e03efa5f76ee1c5c5 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 1.8E-6 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS18535 04aaeba64737914e03efa5f76ee1c5c5 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 1.8E-6 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS18535 04aaeba64737914e03efa5f76ee1c5c5 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 1.8E-6 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS18535 04aaeba64737914e03efa5f76ee1c5c5 314 Gene3D G3DSA:3.40.190.10 99 182 9.3E-23 T 26-04-2016 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 SUPERFAMILY SSF55681 3 281 1.85E-133 T 26-04-2016 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 Gene3D G3DSA:3.30.930.10 1 204 3.2E-107 T 26-04-2016 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 PANTHER PTHR30075 2 304 2.8E-242 T 26-04-2016 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 2 282 59.799 T 26-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 108 132 5.3E-68 T 26-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 157 172 5.3E-68 T 26-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 56 71 5.3E-68 T 26-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 134 154 5.3E-68 T 26-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 77 97 5.3E-68 T 26-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 242 258 5.3E-68 T 26-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 Gene3D G3DSA:1.20.58.180 206 287 6.2E-36 T 26-04-2016 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 4 280 1.5E-150 T 26-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21295 54e32be626d02be4fb05c7e5ae975d14 305 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 3 288 4.9E-155 T 26-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS14375 b146e0bb912964eee90c223e17fa98e7 460 PANTHER PTHR30203 43 452 1.2E-104 T 26-04-2016 RGE_RS14375 b146e0bb912964eee90c223e17fa98e7 460 PANTHER PTHR30203:SF15 43 452 1.2E-104 T 26-04-2016 RGE_RS14375 b146e0bb912964eee90c223e17fa98e7 460 Gene3D G3DSA:1.20.1600.10 41 79 3.5E-80 T 26-04-2016 RGE_RS14375 b146e0bb912964eee90c223e17fa98e7 460 Gene3D G3DSA:1.20.1600.10 130 302 3.5E-80 T 26-04-2016 RGE_RS14375 b146e0bb912964eee90c223e17fa98e7 460 Gene3D G3DSA:1.20.1600.10 340 452 3.5E-80 T 26-04-2016 RGE_RS14375 b146e0bb912964eee90c223e17fa98e7 460 Gene3D G3DSA:2.20.200.10 89 129 3.2E-16 T 26-04-2016 RGE_RS14375 b146e0bb912964eee90c223e17fa98e7 460 Gene3D G3DSA:2.20.200.10 303 338 3.2E-16 T 26-04-2016 RGE_RS14375 b146e0bb912964eee90c223e17fa98e7 460 Pfam PF02321 Outer membrane efflux protein 268 451 1.9E-24 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS14375 b146e0bb912964eee90c223e17fa98e7 460 Pfam PF02321 Outer membrane efflux protein 53 242 2.2E-19 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS14375 b146e0bb912964eee90c223e17fa98e7 460 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 36 452 2.1E-94 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS14375 b146e0bb912964eee90c223e17fa98e7 460 SUPERFAMILY SSF56954 2 453 1.26E-93 T 26-04-2016 RGE_RS07730 028417056f32269b26fb7bd6a7430336 149 PIRSF PIRSF032131 1 146 7.2E-45 T 26-04-2016 IPR009562 Protein of unknown function DUF1178 RGE_RS07730 028417056f32269b26fb7bd6a7430336 149 Pfam PF06676 Protein of unknown function (DUF1178) 1 141 1.2E-51 T 26-04-2016 IPR009562 Protein of unknown function DUF1178 RGE_RS18155 6680e914e17c578e1b7bd9818fea5873 181 PANTHER PTHR13256 3 178 2.4E-49 T 26-04-2016 RGE_RS18155 6680e914e17c578e1b7bd9818fea5873 181 Pfam PF13302 Acetyltransferase (GNAT) domain 16 152 1.4E-17 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS18155 6680e914e17c578e1b7bd9818fea5873 181 Gene3D G3DSA:3.40.630.30 2 176 4.8E-43 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS18155 6680e914e17c578e1b7bd9818fea5873 181 SUPERFAMILY SSF55729 1 176 9.05E-37 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS18155 6680e914e17c578e1b7bd9818fea5873 181 PANTHER PTHR13256:SF24 3 178 2.4E-49 T 26-04-2016 RGE_RS01710 ffcfc279569cffda08f298347cd6dbd0 143 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 3 142 2.4E-44 T 26-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 RGE_RS01710 ffcfc279569cffda08f298347cd6dbd0 143 Gene3D G3DSA:3.100.10.10 32 142 2.5E-22 T 26-04-2016 RGE_RS01710 ffcfc279569cffda08f298347cd6dbd0 143 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 142 5.6E-28 T 26-04-2016 IPR021131 Ribosomal protein L18e/L15P RGE_RS01710 ffcfc279569cffda08f298347cd6dbd0 143 PANTHER PTHR12934 1 142 1.8E-58 T 26-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 RGE_RS01710 ffcfc279569cffda08f298347cd6dbd0 143 SUPERFAMILY SSF52080 4 142 3.14E-43 T 26-04-2016 IPR021131 Ribosomal protein L18e/L15P RGE_RS01710 ffcfc279569cffda08f298347cd6dbd0 143 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 143 19.298 T 26-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 Pfam PF01546 Peptidase family M20/M25/M40 68 378 1.1E-44 T 26-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 Gene3D G3DSA:3.40.630.10 1 193 3.1E-74 T 26-04-2016 RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 Gene3D G3DSA:3.40.630.10 322 379 3.1E-74 T 26-04-2016 RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 SUPERFAMILY SSF55031 185 294 4.78E-30 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 2 381 51.134 T 26-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 6 379 2.0E-153 T 26-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 PANTHER PTHR11014:SF106 2 380 4.0E-90 T 26-04-2016 RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 SUPERFAMILY SSF53187 298 379 1.94E-63 T 26-04-2016 RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 SUPERFAMILY SSF53187 2 184 1.94E-63 T 26-04-2016 RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 PANTHER PTHR11014 2 380 4.0E-90 T 26-04-2016 RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 67 76 - T 26-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 Pfam PF07687 Peptidase dimerisation domain 181 288 3.3E-25 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS11710 303e6978158e9e9d0f8e9a685b014e4e 381 Gene3D G3DSA:3.30.70.360 194 295 3.1E-35 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS20115 284a2d1c866fd6733d82d2e647edea5c 151 PANTHER PTHR10739 4 122 7.0E-32 T 26-04-2016 RGE_RS20115 284a2d1c866fd6733d82d2e647edea5c 151 Gene3D G3DSA:3.40.50.620 2 127 5.6E-35 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS20115 284a2d1c866fd6733d82d2e647edea5c 151 Pfam PF01467 Cytidylyltransferase-like 5 124 4.3E-23 T 26-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RGE_RS20115 284a2d1c866fd6733d82d2e647edea5c 151 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 67 3.4E-20 T 26-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RGE_RS20115 284a2d1c866fd6733d82d2e647edea5c 151 SUPERFAMILY SSF52374 1 125 3.75E-31 T 26-04-2016 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 Gene3D G3DSA:1.10.8.280 302 426 1.5E-39 T 26-04-2016 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 17 956 0.0 T 26-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 PANTHER PTHR32282:SF2 13 976 0.0 T 26-04-2016 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 PANTHER PTHR32282 13 976 0.0 T 26-04-2016 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 Gene3D G3DSA:1.20.1580.10 725 851 3.4E-52 T 26-04-2016 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 SUPERFAMILY SSF52540 646 942 3.51E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 ProSitePatterns PS00211 ABC transporters family signature. 861 875 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 ProSitePatterns PS00211 ABC transporters family signature. 518 532 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 Gene3D G3DSA:3.30.1490.20 218 266 1.7E-27 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 Gene3D G3DSA:3.30.1490.20 143 166 1.7E-27 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 SUPERFAMILY SSF52540 461 600 2.17E-44 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 SUPERFAMILY SSF52540 18 218 2.17E-44 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 Gene3D G3DSA:1.20.1580.10 427 508 1.5E-48 T 26-04-2016 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 Gene3D G3DSA:1.20.1580.10 267 300 1.5E-48 T 26-04-2016 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 Gene3D G3DSA:1.20.1580.10 104 142 1.5E-48 T 26-04-2016 RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 Gene3D G3DSA:3.40.50.300 640 708 9.7E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 Gene3D G3DSA:3.40.50.300 509 629 6.2E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 Gene3D G3DSA:3.40.50.300 6 64 6.2E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 Gene3D G3DSA:3.40.50.300 852 969 9.7E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22630 95bd535ea68740ee5d1ea60a52d0ae62 981 Hamap MF_00205 UvrABC system protein A [uvrA]. 14 971 22.017 T 26-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RGE_RS09710 4b8a11bb24a0714dc7f86223c85b6f14 436 SUPERFAMILY SSF53383 10 434 5.45E-128 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS09710 4b8a11bb24a0714dc7f86223c85b6f14 436 PIRSF PIRSF001434 1 436 7.9E-129 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS09710 4b8a11bb24a0714dc7f86223c85b6f14 436 PANTHER PTHR11808 10 243 2.6E-235 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS09710 4b8a11bb24a0714dc7f86223c85b6f14 436 PANTHER PTHR11808 273 436 2.6E-235 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS09710 4b8a11bb24a0714dc7f86223c85b6f14 436 Gene3D G3DSA:3.40.640.10 11 294 8.3E-120 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS09710 4b8a11bb24a0714dc7f86223c85b6f14 436 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 11 434 1.6E-192 T 26-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RGE_RS09710 4b8a11bb24a0714dc7f86223c85b6f14 436 Gene3D G3DSA:3.90.1150.10 296 436 3.6E-48 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS09710 4b8a11bb24a0714dc7f86223c85b6f14 436 PANTHER PTHR11808:SF12 10 243 2.6E-235 T 26-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RGE_RS09710 4b8a11bb24a0714dc7f86223c85b6f14 436 PANTHER PTHR11808:SF12 273 436 2.6E-235 T 26-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RGE_RS09710 4b8a11bb24a0714dc7f86223c85b6f14 436 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 205 219 - T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS09710 4b8a11bb24a0714dc7f86223c85b6f14 436 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 13 433 1.1E-137 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS01940 ee69276a662b8aeb78b7174398a85daf 254 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 246 2.8E-14 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS01940 ee69276a662b8aeb78b7174398a85daf 254 PANTHER PTHR30043 1 254 5.5E-76 T 26-04-2016 RGE_RS01940 ee69276a662b8aeb78b7174398a85daf 254 PANTHER PTHR30043:SF1 1 254 5.5E-76 T 26-04-2016 RGE_RS01940 ee69276a662b8aeb78b7174398a85daf 254 Gene3D G3DSA:1.10.3720.10 66 252 5.0E-23 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS01940 ee69276a662b8aeb78b7174398a85daf 254 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 12 253 1.1E-72 T 26-04-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 RGE_RS01940 ee69276a662b8aeb78b7174398a85daf 254 SUPERFAMILY SSF161098 67 242 3.01E-31 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 178 478 3.0E-122 T 26-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 SUPERFAMILY SSF53187 172 485 1.0E-122 T 26-04-2016 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 34 136 7.1E-9 T 26-04-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 PANTHER PTHR11963:SF13 36 488 3.2E-184 T 26-04-2016 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 5 487 35.511 T 26-04-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 PANTHER PTHR11963 36 488 3.2E-184 T 26-04-2016 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 Gene3D G3DSA:3.40.220.10 14 153 7.4E-15 T 26-04-2016 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 Gene3D G3DSA:3.40.630.10 164 485 2.8E-139 T 26-04-2016 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 PRINTS PR00481 Cytosol aminopeptidase signature 254 271 5.3E-56 T 26-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 PRINTS PR00481 Cytosol aminopeptidase signature 313 334 5.3E-56 T 26-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 PRINTS PR00481 Cytosol aminopeptidase signature 276 297 5.3E-56 T 26-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 PRINTS PR00481 Cytosol aminopeptidase signature 363 378 5.3E-56 T 26-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 PRINTS PR00481 Cytosol aminopeptidase signature 335 355 5.3E-56 T 26-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 339 346 - T 26-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RGE_RS14190 12cc37ba1641b66386892a69af9d443d 488 SUPERFAMILY SSF52949 15 176 2.18E-11 T 26-04-2016 RGE_RS15135 7506db2eb34b1cf4487b941fcd4012bd 522 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 2 427 2.9E-52 T 26-04-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 RGE_RS15135 7506db2eb34b1cf4487b941fcd4012bd 522 Gene3D G3DSA:3.40.720.10 2 327 2.2E-46 T 26-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RGE_RS15135 7506db2eb34b1cf4487b941fcd4012bd 522 SUPERFAMILY SSF53649 2 460 8.67E-50 T 26-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RGE_RS05205 9c1a15b0d931e00063c3daae0879f29f 431 SUPERFAMILY SSF53850 20 419 5.2E-75 T 26-04-2016 RGE_RS05205 9c1a15b0d931e00063c3daae0879f29f 431 PANTHER PTHR30061 1 431 2.7E-143 T 26-04-2016 RGE_RS05205 9c1a15b0d931e00063c3daae0879f29f 431 Gene3D G3DSA:3.40.190.10 30 150 9.1E-4 T 26-04-2016 RGE_RS05205 9c1a15b0d931e00063c3daae0879f29f 431 Gene3D G3DSA:3.40.190.10 151 350 5.9E-36 T 26-04-2016 RGE_RS05205 9c1a15b0d931e00063c3daae0879f29f 431 Pfam PF13416 Bacterial extracellular solute-binding protein 39 362 3.7E-38 T 26-04-2016 RGE_RS05205 9c1a15b0d931e00063c3daae0879f29f 431 PANTHER PTHR30061:SF7 1 431 2.7E-143 T 26-04-2016 RGE_RS17030 c6026c37574f3a4a35b33f39366e5551 430 Gene3D G3DSA:3.40.640.10 64 308 5.8E-87 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS17030 c6026c37574f3a4a35b33f39366e5551 430 PANTHER PTHR11986:SF70 11 430 2.8E-235 T 26-04-2016 RGE_RS17030 c6026c37574f3a4a35b33f39366e5551 430 SUPERFAMILY SSF53383 26 427 2.36E-134 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS17030 c6026c37574f3a4a35b33f39366e5551 430 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 241 278 - T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS17030 c6026c37574f3a4a35b33f39366e5551 430 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 15 427 4.4E-174 T 26-04-2016 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 RGE_RS17030 c6026c37574f3a4a35b33f39366e5551 430 Pfam PF00202 Aminotransferase class-III 23 424 3.2E-128 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS17030 c6026c37574f3a4a35b33f39366e5551 430 PANTHER PTHR11986 11 430 2.8E-235 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS17030 c6026c37574f3a4a35b33f39366e5551 430 Gene3D G3DSA:3.90.1150.10 309 429 2.0E-40 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS18325 95923075bde552b0a3e8c20e48f3ff6d 1111 SUPERFAMILY SSF52980 811 1104 5.9E-55 T 26-04-2016 IPR011335 Restriction endonuclease type II-like RGE_RS18325 95923075bde552b0a3e8c20e48f3ff6d 1111 PANTHER PTHR30591:SF1 1 1081 8.7E-167 T 26-04-2016 RGE_RS18325 95923075bde552b0a3e8c20e48f3ff6d 1111 SUPERFAMILY SSF52540 335 760 3.72E-76 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18325 95923075bde552b0a3e8c20e48f3ff6d 1111 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 771 4.2E-221 T 26-04-2016 RGE_RS18325 95923075bde552b0a3e8c20e48f3ff6d 1111 PIRSF PIRSF000980 1 1110 3.1E-285 T 26-04-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 RGE_RS18325 95923075bde552b0a3e8c20e48f3ff6d 1111 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 3 790 3.4E-188 T 26-04-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 RGE_RS18325 95923075bde552b0a3e8c20e48f3ff6d 1111 SUPERFAMILY SSF52540 1 323 1.22E-73 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18325 95923075bde552b0a3e8c20e48f3ff6d 1111 Gene3D G3DSA:1.10.10.160 86 181 8.6E-21 T 26-04-2016 IPR013986 DExx box DNA helicase domain RGE_RS18325 95923075bde552b0a3e8c20e48f3ff6d 1111 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1107 11.591 T 26-04-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 RGE_RS18325 95923075bde552b0a3e8c20e48f3ff6d 1111 PANTHER PTHR30591 1 1081 8.7E-167 T 26-04-2016 RGE_RS18325 95923075bde552b0a3e8c20e48f3ff6d 1111 Gene3D G3DSA:3.40.50.300 625 720 2.5E-7 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18325 95923075bde552b0a3e8c20e48f3ff6d 1111 Gene3D G3DSA:3.40.50.300 334 422 2.5E-7 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02440 e8e7c90b9f7f03bc9393ba2e3413485c 118 SUPERFAMILY SSF159894 5 105 5.23E-30 T 26-04-2016 RGE_RS02440 e8e7c90b9f7f03bc9393ba2e3413485c 118 Pfam PF04993 TfoX N-terminal domain 12 104 1.4E-30 T 26-04-2016 IPR007076 TfoX, N-terminal RGE_RS02440 e8e7c90b9f7f03bc9393ba2e3413485c 118 Gene3D G3DSA:3.30.1460.30 4 105 1.7E-34 T 26-04-2016 IPR007076 TfoX, N-terminal RGE_RS01335 0d936ec7349ba8b26321e9b486b7c344 644 PANTHER PTHR33362 420 641 6.2E-87 T 26-04-2016 RGE_RS01335 0d936ec7349ba8b26321e9b486b7c344 644 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 42 317 7.6E-36 T 26-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RGE_RS01335 0d936ec7349ba8b26321e9b486b7c344 644 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 424 633 5.5E-41 T 26-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RGE_RS01335 0d936ec7349ba8b26321e9b486b7c344 644 PANTHER PTHR33362:SF7 420 641 6.2E-87 T 26-04-2016 RGE_RS01335 0d936ec7349ba8b26321e9b486b7c344 644 PANTHER PTHR33362:SF7 13 241 6.2E-87 T 26-04-2016 RGE_RS01335 0d936ec7349ba8b26321e9b486b7c344 644 PANTHER PTHR33362 13 241 6.2E-87 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SUPERFAMILY SSF48452 2 374 2.15E-28 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SUPERFAMILY SSF48452 548 703 1.52E-16 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SUPERFAMILY SSF48452 413 571 1.1E-12 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 PANTHER PTHR23083 738 876 1.6E-54 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 PANTHER PTHR23083 430 509 1.6E-54 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 PANTHER PTHR23083 304 366 1.6E-54 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 PANTHER PTHR23083 91 166 1.6E-54 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 PANTHER PTHR23083 579 704 1.6E-54 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 TIGRFAM TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein 3 868 2.0E-201 T 26-04-2016 IPR014266 PEP-CTERM system TPR-repeat lipoprotein, putative RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Gene3D G3DSA:1.25.40.10 275 543 1.3E-34 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Gene3D G3DSA:1.25.40.10 2 260 5.8E-28 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Gene3D G3DSA:1.25.40.10 737 790 1.1E-31 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Gene3D G3DSA:1.25.40.10 544 703 1.1E-31 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SUPERFAMILY SSF48452 733 859 1.52E-19 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Pfam PF14559 Tetratricopeptide repeat 107 171 1.5E-6 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Pfam PF14559 Tetratricopeptide repeat 1 67 2.9E-6 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Pfam PF14559 Tetratricopeptide repeat 818 874 1.8E-8 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Pfam PF14559 Tetratricopeptide repeat 278 340 2.5E-9 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Gene3D G3DSA:1.25.40.10 792 875 1.4E-10 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Pfam PF13432 Tetratricopeptide repeat 405 466 5.0E-6 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Pfam PF13432 Tetratricopeptide repeat 748 806 2.6E-4 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Pfam PF13432 Tetratricopeptide repeat 474 537 6.2E-5 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Pfam PF13432 Tetratricopeptide repeat 175 216 1.6E-4 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 Pfam PF13432 Tetratricopeptide repeat 610 673 3.6E-8 T 26-04-2016 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SMART SM00028 572 605 390.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SMART SM00028 808 841 20.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SMART SM00028 606 639 0.097 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SMART SM00028 265 298 150.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SMART SM00028 842 875 130.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SMART SM00028 94 127 4.1 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SMART SM00028 435 468 0.23 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SMART SM00028 333 366 0.016 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SMART SM00028 741 774 9.5 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SMART SM00028 162 196 210.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01805 022e70729796ee3499eae0b950086fa2 888 SMART SM00028 25 58 490.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS10560 f07a161ce8ac129f3e58198529b86286 310 Gene3D G3DSA:2.40.10.10 88 202 7.1E-24 T 26-04-2016 RGE_RS10560 f07a161ce8ac129f3e58198529b86286 310 PANTHER PTHR22939 5 299 1.2E-52 T 26-04-2016 RGE_RS10560 f07a161ce8ac129f3e58198529b86286 310 PRINTS PR00834 HtrA/DegQ protease family signature 146 158 2.0E-34 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS10560 f07a161ce8ac129f3e58198529b86286 310 PRINTS PR00834 HtrA/DegQ protease family signature 167 187 2.0E-34 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS10560 f07a161ce8ac129f3e58198529b86286 310 PRINTS PR00834 HtrA/DegQ protease family signature 247 264 2.0E-34 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS10560 f07a161ce8ac129f3e58198529b86286 310 PRINTS PR00834 HtrA/DegQ protease family signature 269 286 2.0E-34 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS10560 f07a161ce8ac129f3e58198529b86286 310 PRINTS PR00834 HtrA/DegQ protease family signature 209 233 2.0E-34 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS10560 f07a161ce8ac129f3e58198529b86286 310 Pfam PF13365 Trypsin-like peptidase domain 137 276 3.1E-31 T 26-04-2016 RGE_RS10560 f07a161ce8ac129f3e58198529b86286 310 Gene3D G3DSA:2.40.10.10 203 302 1.2E-32 T 26-04-2016 RGE_RS10560 f07a161ce8ac129f3e58198529b86286 310 SUPERFAMILY SSF50494 92 301 3.63E-51 T 26-04-2016 IPR009003 Peptidase S1, PA clan RGE_RS02400 51026002b89c4409d92dec332e4ad4b0 361 Gene3D G3DSA:3.40.50.150 70 138 2.8E-5 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS02400 51026002b89c4409d92dec332e4ad4b0 361 SUPERFAMILY SSF53335 15 347 1.59E-83 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS02400 51026002b89c4409d92dec332e4ad4b0 361 PANTHER PTHR12049 6 341 3.5E-48 T 26-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RGE_RS02400 51026002b89c4409d92dec332e4ad4b0 361 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 75 295 7.8E-43 T 26-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RGE_RS13020 7778f3035e1510e363c3a40f86e4c07e 328 Gene3D G3DSA:3.20.20.120 121 318 5.9E-56 T 26-04-2016 IPR029065 Enolase C-terminal domain-like RGE_RS13020 7778f3035e1510e363c3a40f86e4c07e 328 Gene3D G3DSA:3.30.390.10 5 105 6.1E-33 T 26-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RGE_RS13020 7778f3035e1510e363c3a40f86e4c07e 328 SUPERFAMILY SSF51604 120 328 4.98E-53 T 26-04-2016 IPR029065 Enolase C-terminal domain-like RGE_RS13020 7778f3035e1510e363c3a40f86e4c07e 328 SUPERFAMILY SSF54826 5 114 5.3E-27 T 26-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RGE_RS13020 7778f3035e1510e363c3a40f86e4c07e 328 PANTHER PTHR13794:SF60 1 308 4.3E-94 T 26-04-2016 RGE_RS13020 7778f3035e1510e363c3a40f86e4c07e 328 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 8 110 1.5E-11 T 26-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RGE_RS13020 7778f3035e1510e363c3a40f86e4c07e 328 Pfam PF13378 Enolase C-terminal domain-like 138 289 8.7E-26 T 26-04-2016 IPR029065 Enolase C-terminal domain-like RGE_RS13020 7778f3035e1510e363c3a40f86e4c07e 328 PANTHER PTHR13794 1 308 4.3E-94 T 26-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 RGE_RS13020 7778f3035e1510e363c3a40f86e4c07e 328 SMART SM00922 132 223 8.5E-16 T 26-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RGE_RS00205 62bf0b54bb8150ac1d6b9841d22e12a8 93 Pfam PF04248 Domain of unknown function (DUF427) 1 87 1.2E-31 T 26-04-2016 IPR007361 Domain of unknown function DUF427 RGE_RS00205 62bf0b54bb8150ac1d6b9841d22e12a8 93 PANTHER PTHR34310 1 93 1.9E-40 T 26-04-2016 RGE_RS00205 62bf0b54bb8150ac1d6b9841d22e12a8 93 PANTHER PTHR34310:SF1 1 93 1.9E-40 T 26-04-2016 RGE_RS02460 18340fc88dcf73cfd0a2521313bfe043 280 PANTHER PTHR21091 133 263 3.8E-33 T 26-04-2016 RGE_RS02460 18340fc88dcf73cfd0a2521313bfe043 280 SUPERFAMILY SSF51730 4 276 1.49E-89 T 26-04-2016 IPR029041 FAD-linked oxidoreductase-like RGE_RS02460 18340fc88dcf73cfd0a2521313bfe043 280 Pfam PF02219 Methylenetetrahydrofolate reductase 5 275 4.7E-85 T 26-04-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RGE_RS02460 18340fc88dcf73cfd0a2521313bfe043 280 Gene3D G3DSA:3.20.20.220 4 278 8.0E-101 T 26-04-2016 IPR029041 FAD-linked oxidoreductase-like RGE_RS02460 18340fc88dcf73cfd0a2521313bfe043 280 PANTHER PTHR21091:SF31 133 263 3.8E-33 T 26-04-2016 RGE_RS02460 18340fc88dcf73cfd0a2521313bfe043 280 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 6 274 4.0E-96 T 26-04-2016 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RGE_RS23320 fdf37fb66356a6dac243acb5fffd92a8 556 Pfam PF13650 Aspartyl protease 299 394 4.8E-12 T 26-04-2016 RGE_RS23320 fdf37fb66356a6dac243acb5fffd92a8 556 Pfam PF13650 Aspartyl protease 439 520 9.6E-8 T 26-04-2016 RGE_RS23320 fdf37fb66356a6dac243acb5fffd92a8 556 SUPERFAMILY SSF53474 33 279 2.63E-32 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS23320 fdf37fb66356a6dac243acb5fffd92a8 556 PANTHER PTHR17630 36 233 1.8E-17 T 26-04-2016 RGE_RS23320 fdf37fb66356a6dac243acb5fffd92a8 556 Pfam PF01738 Dienelactone hydrolase family 37 276 2.7E-17 T 26-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 RGE_RS23320 fdf37fb66356a6dac243acb5fffd92a8 556 Gene3D G3DSA:3.40.50.1820 20 276 2.9E-40 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS08135 fd332e8447c911cc9732fc6a03bf9ceb 125 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 16 125 3.2E-33 T 26-04-2016 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 RGE_RS08135 fd332e8447c911cc9732fc6a03bf9ceb 125 PIRSF PIRSF037511 7 125 3.8E-33 T 26-04-2016 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 RGE_RS08135 fd332e8447c911cc9732fc6a03bf9ceb 125 PANTHER PTHR12789 41 125 5.4E-21 T 26-04-2016 RGE_RS08135 fd332e8447c911cc9732fc6a03bf9ceb 125 Pfam PF01253 Translation initiation factor SUI1 49 117 4.4E-15 T 26-04-2016 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 RGE_RS08135 fd332e8447c911cc9732fc6a03bf9ceb 125 Gene3D G3DSA:3.30.780.10 46 125 4.9E-30 T 26-04-2016 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 RGE_RS08135 fd332e8447c911cc9732fc6a03bf9ceb 125 SUPERFAMILY SSF55159 14 121 2.88E-26 T 26-04-2016 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 RGE_RS02965 0b8e212283741029f04c27fd826fc32f 563 Gene3D G3DSA:3.40.50.980 184 215 2.0E-37 T 26-04-2016 RGE_RS02965 0b8e212283741029f04c27fd826fc32f 563 Gene3D G3DSA:3.40.50.980 24 152 2.0E-37 T 26-04-2016 RGE_RS02965 0b8e212283741029f04c27fd826fc32f 563 PANTHER PTHR24096 7 154 1.1E-166 T 26-04-2016 RGE_RS02965 0b8e212283741029f04c27fd826fc32f 563 PANTHER PTHR24096 175 551 1.1E-166 T 26-04-2016 RGE_RS02965 0b8e212283741029f04c27fd826fc32f 563 SUPERFAMILY SSF56801 23 552 9.03E-149 T 26-04-2016 RGE_RS02965 0b8e212283741029f04c27fd826fc32f 563 Pfam PF00501 AMP-binding enzyme 31 459 1.4E-107 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS02965 0b8e212283741029f04c27fd826fc32f 563 Pfam PF13193 AMP-binding enzyme C-terminal domain 468 543 3.1E-19 T 26-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RGE_RS02965 0b8e212283741029f04c27fd826fc32f 563 Gene3D G3DSA:2.30.38.10 379 450 1.9E-29 T 26-04-2016 RGE_RS02965 0b8e212283741029f04c27fd826fc32f 563 ProSitePatterns PS00455 Putative AMP-binding domain signature. 210 221 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS02965 0b8e212283741029f04c27fd826fc32f 563 Gene3D G3DSA:3.40.50.980 216 378 4.0E-40 T 26-04-2016 RGE_RS02965 0b8e212283741029f04c27fd826fc32f 563 Gene3D G3DSA:3.30.300.30 454 551 7.2E-28 T 26-04-2016 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 366 393 1.1E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 289 318 1.1E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 9 34 1.1E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 443 472 1.1E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 395 424 1.1E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 SMART SM00304 215 267 1.6E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 329 514 8.6E-60 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 Pfam PF00672 HAMP domain 196 264 1.5E-13 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 Pfam PF12729 Four helix bundle sensory module for signal transduction 10 176 7.3E-16 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 SUPERFAMILY SSF58104 235 516 3.27E-72 T 26-04-2016 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 SMART SM00283 268 515 1.0E-86 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 PANTHER PTHR32089:SF63 75 516 6.9E-151 T 26-04-2016 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 PANTHER PTHR32089 75 516 6.9E-151 T 26-04-2016 RGE_RS03345 247c385b58ebf4c66ca43a392a8d5c95 516 Gene3D G3DSA:1.10.287.950 283 487 3.2E-59 T 26-04-2016 RGE_RS09945 8d565d5436f9e712c19878742010dbb4 758 SUPERFAMILY SSF46785 684 753 1.23E-8 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09945 8d565d5436f9e712c19878742010dbb4 758 Pfam PF13424 Tetratricopeptide repeat 406 472 2.3E-9 T 26-04-2016 RGE_RS09945 8d565d5436f9e712c19878742010dbb4 758 SMART SM00028 441 474 0.012 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS09945 8d565d5436f9e712c19878742010dbb4 758 SMART SM00028 482 515 0.13 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS09945 8d565d5436f9e712c19878742010dbb4 758 SMART SM00028 401 434 410.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS09945 8d565d5436f9e712c19878742010dbb4 758 SMART SM00028 272 305 440.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS09945 8d565d5436f9e712c19878742010dbb4 758 Gene3D G3DSA:1.25.40.10 293 338 2.2E-20 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS09945 8d565d5436f9e712c19878742010dbb4 758 Gene3D G3DSA:1.25.40.10 390 534 2.2E-20 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS09945 8d565d5436f9e712c19878742010dbb4 758 SUPERFAMILY SSF48452 271 347 9.28E-16 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS09945 8d565d5436f9e712c19878742010dbb4 758 SUPERFAMILY SSF48452 404 511 9.28E-16 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS09945 8d565d5436f9e712c19878742010dbb4 758 Gene3D G3DSA:1.10.10.10 686 752 1.3E-6 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 PANTHER PTHR30013:SF5 1 139 1.4E-136 T 26-04-2016 RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 PANTHER PTHR30013 155 329 1.4E-136 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 198 272 1.3E-22 T 26-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 Gene3D G3DSA:4.10.480.10 197 273 4.0E-25 T 26-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 PIRSF PIRSF000310 1 322 4.2E-89 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 SUPERFAMILY SSF56770 2 274 8.9E-82 T 26-04-2016 RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 PANTHER PTHR30013 1 139 1.4E-136 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 PANTHER PTHR30013:SF5 155 329 1.4E-136 T 26-04-2016 RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 Gene3D G3DSA:3.40.50.700 2 194 1.7E-44 T 26-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 11 176 6.2E-31 T 26-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 221 247 8.0E-5 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 262 274 8.0E-5 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17535 18bb10ab73b0c827b3e2061593f38d08 330 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 98 112 8.0E-5 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17060 c51619d5e1cb8850a2764d80ea1e6ee8 292 Pfam PF00990 Diguanylate cyclase, GGDEF domain 120 261 4.7E-20 T 26-04-2016 IPR000160 GGDEF domain RGE_RS17060 c51619d5e1cb8850a2764d80ea1e6ee8 292 Gene3D G3DSA:3.30.70.270 120 261 9.8E-27 T 26-04-2016 RGE_RS17060 c51619d5e1cb8850a2764d80ea1e6ee8 292 SUPERFAMILY SSF55073 124 261 3.37E-23 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS17060 c51619d5e1cb8850a2764d80ea1e6ee8 292 SMART SM00267 101 279 1.0E-9 T 26-04-2016 IPR000160 GGDEF domain RGE_RS17060 c51619d5e1cb8850a2764d80ea1e6ee8 292 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 120 261 1.5E-13 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 PANTHER PTHR30562 336 502 1.1E-208 T 26-04-2016 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 SMART SM00465 33 114 6.3E-18 T 26-04-2016 IPR000305 GIY-YIG nuclease superfamily RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 435 604 5.6E-47 T 26-04-2016 IPR001162 UvrC family homology region RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 SUPERFAMILY SSF46600 218 270 7.06E-11 T 26-04-2016 IPR001943 UVR domain GO:0005515 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 Hamap MF_00203 UvrABC system protein C [uvrC]. 20 670 25.691 T 26-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 PANTHER PTHR30562:SF1 336 502 1.1E-208 T 26-04-2016 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 25 652 6.4E-143 T 26-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 SUPERFAMILY SSF82771 33 116 3.01E-21 T 26-04-2016 IPR000305 GIY-YIG nuclease superfamily RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 Pfam PF14520 Helix-hairpin-helix domain 620 671 6.2E-7 T 26-04-2016 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 PANTHER PTHR30562 20 317 1.1E-208 T 26-04-2016 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 PANTHER PTHR30562 524 671 1.1E-208 T 26-04-2016 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 Gene3D G3DSA:1.10.150.20 619 672 1.0E-20 T 26-04-2016 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 Pfam PF01541 GIY-YIG catalytic domain 35 109 3.2E-10 T 26-04-2016 IPR000305 GIY-YIG nuclease superfamily RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 Gene3D G3DSA:4.10.860.10 210 271 6.9E-17 T 26-04-2016 IPR001943 UVR domain GO:0005515 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 PANTHER PTHR30562:SF1 20 317 1.1E-208 T 26-04-2016 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 PANTHER PTHR30562:SF1 524 671 1.1E-208 T 26-04-2016 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 Gene3D G3DSA:3.40.1440.10 34 113 2.3E-7 T 26-04-2016 IPR027299 GIY-YIG domain RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 Pfam PF02151 UvrB/uvrC motif 232 264 1.3E-5 T 26-04-2016 IPR001943 UVR domain GO:0005515 RGE_RS07975 9fbc259723c3b0835d47f2d8b681008c 672 SUPERFAMILY SSF47781 583 672 1.72E-17 T 26-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RGE_RS01760 11cb1223881e5c991696153bf13c11d8 376 Pfam PF07993 Male sterility protein 6 246 8.5E-45 T 26-04-2016 IPR013120 Male sterility, NAD-binding Reactome: REACT_22258 RGE_RS01760 11cb1223881e5c991696153bf13c11d8 376 Gene3D G3DSA:3.40.50.720 4 267 1.6E-31 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS01760 11cb1223881e5c991696153bf13c11d8 376 SUPERFAMILY SSF51735 4 265 7.7E-34 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS01760 11cb1223881e5c991696153bf13c11d8 376 PANTHER PTHR24095 2 266 5.4E-23 T 26-04-2016 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 Gene3D G3DSA:2.60.40.420 116 291 1.8E-52 T 26-04-2016 IPR008972 Cupredoxin RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 SUPERFAMILY SSF81464 26 118 9.32E-26 T 26-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 29 107 5.4E-14 T 26-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 124 249 2.5E-37 T 26-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 37 260 2.4E-53 T 26-04-2016 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 PANTHER PTHR22888:SF2 30 304 2.4E-91 T 26-04-2016 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 196 244 - T 26-04-2016 IPR001505 Copper centre Cu(A) GO:0005507 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 283 355 1.1E-12 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 SUPERFAMILY SSF49503 173 309 7.03E-47 T 26-04-2016 IPR008972 Cupredoxin RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 SUPERFAMILY SSF49503 116 143 7.03E-47 T 26-04-2016 IPR008972 Cupredoxin RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 PANTHER PTHR22888 30 304 2.4E-91 T 26-04-2016 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 SUPERFAMILY SSF46626 268 363 2.26E-21 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 PRINTS PR01166 Cytochrome c oxidase subunit II signature 120 139 1.6E-35 T 26-04-2016 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 PRINTS PR01166 Cytochrome c oxidase subunit II signature 98 118 1.6E-35 T 26-04-2016 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 PRINTS PR01166 Cytochrome c oxidase subunit II signature 195 215 1.6E-35 T 26-04-2016 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 PRINTS PR01166 Cytochrome c oxidase subunit II signature 86 98 1.6E-35 T 26-04-2016 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 PRINTS PR01166 Cytochrome c oxidase subunit II signature 233 250 1.6E-35 T 26-04-2016 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 PRINTS PR01166 Cytochrome c oxidase subunit II signature 171 192 1.6E-35 T 26-04-2016 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 PRINTS PR01166 Cytochrome c oxidase subunit II signature 215 232 1.6E-35 T 26-04-2016 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 Gene3D G3DSA:1.10.760.10 292 364 1.9E-22 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS20405 962749da46460cfa03fdbde6317331c5 378 Gene3D G3DSA:1.10.287.90 29 115 1.2E-23 T 26-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 PIRSF PIRSF001400 1 425 4.8E-189 T 26-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 Hamap MF_00318 Enolase [eno]. 2 411 45.415 T 26-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 424 2.0E-132 T 26-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 Gene3D G3DSA:3.20.20.120 128 424 4.3E-134 T 26-04-2016 IPR029065 Enolase C-terminal domain-like RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 SMART SM01192 139 425 1.1E-222 T 26-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 SUPERFAMILY SSF54826 4 136 5.83E-56 T 26-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 SMART SM01193 4 134 2.3E-95 T 26-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 425 4.5E-208 T 26-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 PRINTS PR00148 Enolase signature 107 123 1.9E-44 T 26-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 PRINTS PR00148 Enolase signature 363 380 1.9E-44 T 26-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 PRINTS PR00148 Enolase signature 311 322 1.9E-44 T 26-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 PRINTS PR00148 Enolase signature 334 348 1.9E-44 T 26-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 PRINTS PR00148 Enolase signature 37 51 1.9E-44 T 26-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 PRINTS PR00148 Enolase signature 161 174 1.9E-44 T 26-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 SUPERFAMILY SSF51604 139 426 4.1E-130 T 26-04-2016 IPR029065 Enolase C-terminal domain-like RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 PANTHER PTHR11902 2 427 7.5E-260 T 26-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 Pfam PF03952 Enolase, N-terminal domain 4 133 6.2E-59 T 26-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 Gene3D G3DSA:3.30.390.10 4 126 5.5E-55 T 26-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RGE_RS07365 de8ede1484702c0af8e8ee20351b2d99 427 ProSitePatterns PS00164 Enolase signature. 334 347 - T 26-04-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 340 448 7.8E-21 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 202 267 6.7E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 SMART SM00387 338 450 1.3E-31 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 PANTHER PTHR24423 42 230 4.7E-75 T 26-04-2016 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 PANTHER PTHR24423 261 447 4.7E-75 T 26-04-2016 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 SUPERFAMILY SSF55874 289 447 3.14E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 SUPERFAMILY SSF47384 197 245 4.32E-7 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 393 7.7E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 407 7.7E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 447 7.7E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 428 7.7E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 Gene3D G3DSA:3.30.565.10 306 447 3.3E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 Gene3D G3DSA:3.30.450.20 50 166 1.3E-13 T 26-04-2016 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 SMART SM00388 202 297 8.2E-5 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 Gene3D G3DSA:1.10.287.130 198 245 4.3E-6 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 65 177 2.0E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 SUPERFAMILY SSF55785 51 166 7.23E-12 T 26-04-2016 IPR000014 PAS domain RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 PANTHER PTHR24423:SF445 42 230 4.7E-75 T 26-04-2016 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 PANTHER PTHR24423:SF445 261 447 4.7E-75 T 26-04-2016 RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 SMART SM00091 60 126 1.6E-4 T 26-04-2016 IPR000014 PAS domain RGE_RS17600 28914d85981b221b5b8e133610a3c853 450 Pfam PF08448 PAS fold 67 175 1.5E-9 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 SMART SM00448 935 1049 3.2E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 Gene3D G3DSA:1.10.287.130 681 743 1.8E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 Pfam PF05231 MASE1 18 216 4.2E-19 T 26-04-2016 IPR007895 MASE1 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 Pfam PF00512 His Kinase A (phospho-acceptor) domain 689 757 1.9E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 Gene3D G3DSA:3.30.565.10 744 914 7.2E-38 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 551 675 3.2E-21 T 26-04-2016 IPR000014 PAS domain RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 SMART SM00388 689 757 4.9E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 PRINTS PR00344 Bacterial sensor protein C-terminal signature 875 893 8.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 PRINTS PR00344 Bacterial sensor protein C-terminal signature 841 855 8.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 PRINTS PR00344 Bacterial sensor protein C-terminal signature 899 912 8.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 804 914 5.5E-23 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 SMART SM01079 269 454 5.3E-29 T 26-04-2016 IPR006189 CHASE domain RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 SUPERFAMILY SSF52172 934 1057 9.53E-29 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 Gene3D G3DSA:3.40.50.2300 934 1056 3.8E-30 T 26-04-2016 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 SUPERFAMILY SSF47384 675 758 1.39E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 SMART SM00091 555 621 2.1E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 Pfam PF00072 Response regulator receiver domain 938 1048 3.9E-20 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 SUPERFAMILY SSF55785 540 668 1.08E-26 T 26-04-2016 IPR000014 PAS domain RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 PANTHER PTHR24423 44 61 3.0E-124 T 26-04-2016 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 PANTHER PTHR24423 539 1059 3.0E-124 T 26-04-2016 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 Pfam PF03924 CHASE domain 282 443 3.2E-29 T 26-04-2016 IPR006189 CHASE domain RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 SMART SM00086 628 670 5.8E-5 T 26-04-2016 IPR001610 PAC motif RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 SMART SM00387 803 915 4.8E-33 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 Gene3D G3DSA:3.30.450.20 540 668 1.2E-27 T 26-04-2016 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 Pfam PF08447 PAS fold 581 664 5.9E-10 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS20335 161b4814095f85bd034853a58e62fa1b 1063 SUPERFAMILY SSF55874 746 913 1.05E-41 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 Gene3D G3DSA:2.60.40.1180 484 563 1.7E-16 T 26-04-2016 IPR013780 Glycosyl hydrolase, all-beta RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 29 564 3.1E-278 T 26-04-2016 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622 RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 SUPERFAMILY SSF51445 40 484 1.48E-129 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 Gene3D G3DSA:3.90.400.10 129 197 3.7E-25 T 26-04-2016 RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 SUPERFAMILY SSF51011 484 564 3.71E-16 T 26-04-2016 RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 Pfam PF00128 Alpha amylase, catalytic domain 52 405 7.8E-75 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 PANTHER PTHR10357:SF164 26 421 8.8E-270 T 26-04-2016 RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 PANTHER PTHR10357:SF164 460 588 8.8E-270 T 26-04-2016 RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 SMART SM00642 37 436 1.2E-107 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 Gene3D G3DSA:3.20.20.80 205 430 6.8E-108 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 Gene3D G3DSA:3.20.20.80 463 476 6.8E-108 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 Gene3D G3DSA:3.20.20.80 31 128 6.8E-108 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 PANTHER PTHR10357 26 421 8.8E-270 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 PANTHER PTHR10357 460 588 8.8E-270 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS10805 2b5cd452b672cbd0e3bbed805937e96c 1121 Pfam PF16657 Maltogenic Amylase, C-terminal domain 484 561 2.2E-27 T 26-04-2016 IPR032091 Maltogenic Amylase, C-terminal RGE_RS10985 11b0702fca7e6dcde961c64bfc7a2de1 745 SUPERFAMILY SSF89550 40 67 2.16E-5 T 26-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RGE_RS15820 2773801fca470c414e25cf3588a40057 169 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 4 160 4.1E-50 T 26-04-2016 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530|UniPathway: UPA00792 RGE_RS15820 2773801fca470c414e25cf3588a40057 169 SUPERFAMILY SSF52540 2 158 2.58E-20 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15820 2773801fca470c414e25cf3588a40057 169 PANTHER PTHR11603 4 162 1.9E-62 T 26-04-2016 RGE_RS15820 2773801fca470c414e25cf3588a40057 169 Gene3D G3DSA:3.40.50.300 2 160 7.0E-56 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15820 2773801fca470c414e25cf3588a40057 169 Pfam PF01202 Shikimate kinase 11 118 4.9E-9 T 26-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 SUPERFAMILY SSF54292 1 89 8.39E-27 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 PANTHER PTHR19370:SF68 33 336 2.8E-67 T 26-04-2016 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 Pfam PF00175 Oxidoreductase NAD-binding domain 212 317 5.1E-20 T 26-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 SUPERFAMILY SSF63380 103 202 1.54E-21 T 26-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 Pfam PF00970 Oxidoreductase FAD-binding domain 106 200 4.4E-15 T 26-04-2016 IPR008333 Oxidoreductase, FAD-binding domain RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 236 245 5.3E-21 T 26-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 195 204 5.3E-21 T 26-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 148 155 5.3E-21 T 26-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 211 230 5.3E-21 T 26-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 303 311 5.3E-21 T 26-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 144 5.3E-21 T 26-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 26-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 Gene3D G3DSA:3.10.20.30 2 89 2.5E-28 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 81 6.1E-15 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 303 311 1.0E-8 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 148 155 1.0E-8 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 211 230 1.0E-8 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 236 245 1.0E-8 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 PANTHER PTHR19370 33 336 2.8E-67 T 26-04-2016 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 SUPERFAMILY SSF52343 204 337 3.27E-39 T 26-04-2016 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 Gene3D G3DSA:2.40.30.10 102 202 3.0E-29 T 26-04-2016 RGE_RS16590 f4ee34a7855666ca2e5dcec0b6fc9c42 347 Gene3D G3DSA:3.40.50.80 205 338 2.0E-39 T 26-04-2016 RGE_RS14100 a067b75b464aa2196c5c0aa522ccb2c0 427 SUPERFAMILY SSF51905 276 354 7.78E-26 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS14100 a067b75b464aa2196c5c0aa522ccb2c0 427 SUPERFAMILY SSF51905 40 143 7.78E-26 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS14100 a067b75b464aa2196c5c0aa522ccb2c0 427 Gene3D G3DSA:3.50.50.60 40 151 8.9E-37 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS14100 a067b75b464aa2196c5c0aa522ccb2c0 427 Gene3D G3DSA:3.50.50.60 283 355 8.9E-37 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS14100 a067b75b464aa2196c5c0aa522ccb2c0 427 SUPERFAMILY SSF51905 158 282 1.11E-27 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS14100 a067b75b464aa2196c5c0aa522ccb2c0 427 Pfam PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding 359 425 4.9E-20 T 26-04-2016 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 RGE_RS14100 a067b75b464aa2196c5c0aa522ccb2c0 427 Gene3D G3DSA:3.50.50.60 159 282 1.7E-44 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS14100 a067b75b464aa2196c5c0aa522ccb2c0 427 SUPERFAMILY SSF55424 358 425 6.04E-17 T 26-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RGE_RS14100 a067b75b464aa2196c5c0aa522ccb2c0 427 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 40 281 4.4E-13 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS14100 a067b75b464aa2196c5c0aa522ccb2c0 427 Gene3D G3DSA:3.90.760.10 359 425 3.6E-20 T 26-04-2016 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 RGE_RS14100 a067b75b464aa2196c5c0aa522ccb2c0 427 PANTHER PTHR10632 39 380 1.8E-101 T 26-04-2016 RGE_RS14100 a067b75b464aa2196c5c0aa522ccb2c0 427 PANTHER PTHR10632:SF10 39 380 1.8E-101 T 26-04-2016 RGE_RS12935 ab6250e0dbfc212d4cc270a64b9eaeb5 305 PANTHER PTHR30537:SF5 1 289 4.8E-107 T 26-04-2016 RGE_RS12935 ab6250e0dbfc212d4cc270a64b9eaeb5 305 SUPERFAMILY SSF53850 90 294 1.74E-45 T 26-04-2016 RGE_RS12935 ab6250e0dbfc212d4cc270a64b9eaeb5 305 Gene3D G3DSA:1.10.10.10 4 85 1.9E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS12935 ab6250e0dbfc212d4cc270a64b9eaeb5 305 Gene3D G3DSA:3.40.190.10 90 173 2.3E-6 T 26-04-2016 RGE_RS12935 ab6250e0dbfc212d4cc270a64b9eaeb5 305 Pfam PF03466 LysR substrate binding domain 88 292 2.8E-42 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS12935 ab6250e0dbfc212d4cc270a64b9eaeb5 305 SUPERFAMILY SSF46785 4 112 5.44E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS12935 ab6250e0dbfc212d4cc270a64b9eaeb5 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.8E-19 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS12935 ab6250e0dbfc212d4cc270a64b9eaeb5 305 PANTHER PTHR30537 1 289 4.8E-107 T 26-04-2016 RGE_RS12935 ab6250e0dbfc212d4cc270a64b9eaeb5 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.1E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS12935 ab6250e0dbfc212d4cc270a64b9eaeb5 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.1E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS12935 ab6250e0dbfc212d4cc270a64b9eaeb5 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.1E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS12935 ab6250e0dbfc212d4cc270a64b9eaeb5 305 Gene3D G3DSA:3.40.190.10 174 262 8.2E-23 T 26-04-2016 RGE_RS03190 46e9751f6d7f90989730cc9e34bc6293 184 PANTHER PTHR13256 6 182 8.3E-44 T 26-04-2016 RGE_RS03190 46e9751f6d7f90989730cc9e34bc6293 184 PANTHER PTHR13256:SF28 6 182 8.3E-44 T 26-04-2016 RGE_RS03190 46e9751f6d7f90989730cc9e34bc6293 184 Gene3D G3DSA:3.40.630.30 7 182 1.9E-43 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS03190 46e9751f6d7f90989730cc9e34bc6293 184 SUPERFAMILY SSF55729 8 182 5.32E-42 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS03190 46e9751f6d7f90989730cc9e34bc6293 184 Pfam PF13302 Acetyltransferase (GNAT) domain 14 157 1.2E-21 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS20290 fcc75a42bc45eae7a7cb13613bc82b56 571 SMART SM00228 465 532 4.9E-6 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS20290 fcc75a42bc45eae7a7cb13613bc82b56 571 Pfam PF05299 M61 glycyl aminopeptidase 267 382 4.9E-43 T 26-04-2016 IPR007963 Peptidase M61, catalytic domain RGE_RS20290 fcc75a42bc45eae7a7cb13613bc82b56 571 SUPERFAMILY SSF55486 207 441 1.98E-12 T 26-04-2016 RGE_RS20290 fcc75a42bc45eae7a7cb13613bc82b56 571 SUPERFAMILY SSF50156 453 541 5.26E-12 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS20290 fcc75a42bc45eae7a7cb13613bc82b56 571 Gene3D G3DSA:2.30.42.10 453 542 1.2E-11 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS20290 fcc75a42bc45eae7a7cb13613bc82b56 571 PIRSF PIRSF016493 1 570 1.1E-174 T 26-04-2016 IPR024191 Peptidase M61 RGE_RS19940 e7fa61d6d8a815c3b1d6e5b0a2632a38 539 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 38 520 7.6E-151 T 26-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 RGE_RS19940 e7fa61d6d8a815c3b1d6e5b0a2632a38 539 PANTHER PTHR23501 28 528 1.1E-213 T 26-04-2016 RGE_RS19940 e7fa61d6d8a815c3b1d6e5b0a2632a38 539 Pfam PF07690 Major Facilitator Superfamily 41 434 3.6E-58 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS19940 e7fa61d6d8a815c3b1d6e5b0a2632a38 539 Gene3D G3DSA:1.20.1250.20 503 526 7.3E-18 T 26-04-2016 RGE_RS19940 e7fa61d6d8a815c3b1d6e5b0a2632a38 539 Gene3D G3DSA:1.20.1250.20 289 450 7.3E-18 T 26-04-2016 RGE_RS19940 e7fa61d6d8a815c3b1d6e5b0a2632a38 539 Gene3D G3DSA:1.20.1250.20 39 215 3.1E-31 T 26-04-2016 RGE_RS19940 e7fa61d6d8a815c3b1d6e5b0a2632a38 539 SUPERFAMILY SSF103473 498 527 7.19E-67 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS19940 e7fa61d6d8a815c3b1d6e5b0a2632a38 539 SUPERFAMILY SSF103473 273 444 7.19E-67 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS19940 e7fa61d6d8a815c3b1d6e5b0a2632a38 539 SUPERFAMILY SSF103473 20 215 7.19E-67 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS19940 e7fa61d6d8a815c3b1d6e5b0a2632a38 539 PANTHER PTHR23501:SF52 28 528 1.1E-213 T 26-04-2016 RGE_RS00660 2064d822f77aa9f6bd63f07aa58861a0 431 Pfam PF03600 Citrate transporter 14 362 6.4E-47 T 26-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 RGE_RS00660 2064d822f77aa9f6bd63f07aa58861a0 431 PANTHER PTHR10283 7 429 1.7E-101 T 26-04-2016 RGE_RS00660 2064d822f77aa9f6bd63f07aa58861a0 431 TIGRFAM TIGR00784 citMHS: citrate transporter 1 429 1.5E-122 T 26-04-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 RGE_RS00660 2064d822f77aa9f6bd63f07aa58861a0 431 PANTHER PTHR10283:SF87 7 429 1.7E-101 T 26-04-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 RGE_RS05550 b014f0bd213fa61a01f2b537cbff9661 241 PANTHER PTHR30055 19 211 2.6E-17 T 26-04-2016 RGE_RS05550 b014f0bd213fa61a01f2b537cbff9661 241 Pfam PF00440 Bacterial regulatory proteins, tetR family 36 82 6.4E-15 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS05550 b014f0bd213fa61a01f2b537cbff9661 241 SUPERFAMILY SSF46689 25 94 2.84E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS05550 b014f0bd213fa61a01f2b537cbff9661 241 Gene3D G3DSA:1.10.357.10 23 219 8.7E-24 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS05550 b014f0bd213fa61a01f2b537cbff9661 241 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 49 5.9E-8 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS05550 b014f0bd213fa61a01f2b537cbff9661 241 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 57 80 5.9E-8 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS05550 b014f0bd213fa61a01f2b537cbff9661 241 ProSitePatterns PS01081 TetR-type HTH domain signature. 48 79 - T 26-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RGE_RS02410 a0899b5a428af60c4afe7bc7941a7179 408 PIRSF PIRSF000813 3 408 4.8E-177 T 26-04-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 RGE_RS02410 a0899b5a428af60c4afe7bc7941a7179 408 PANTHER PTHR13734 6 300 9.8E-64 T 26-04-2016 RGE_RS02410 a0899b5a428af60c4afe7bc7941a7179 408 SMART SM00471 224 359 0.0048 T 26-04-2016 IPR003607 HD/PDEase domain RGE_RS02410 a0899b5a428af60c4afe7bc7941a7179 408 Hamap MF_01261 Multifunctional CCA protein [cca]. 3 408 49.457 T 26-04-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 RGE_RS02410 a0899b5a428af60c4afe7bc7941a7179 408 SUPERFAMILY SSF81301 3 121 5.34E-30 T 26-04-2016 RGE_RS02410 a0899b5a428af60c4afe7bc7941a7179 408 Gene3D G3DSA:1.10.3090.10 124 358 5.2E-48 T 26-04-2016 RGE_RS02410 a0899b5a428af60c4afe7bc7941a7179 408 Pfam PF01966 HD domain 231 332 1.0E-8 T 26-04-2016 IPR006674 HD domain RGE_RS02410 a0899b5a428af60c4afe7bc7941a7179 408 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 211 1.9E-10 T 26-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain RGE_RS02410 a0899b5a428af60c4afe7bc7941a7179 408 SUPERFAMILY SSF81891 123 358 6.28E-50 T 26-04-2016 RGE_RS02410 a0899b5a428af60c4afe7bc7941a7179 408 Pfam PF01743 Poly A polymerase head domain 5 123 3.0E-16 T 26-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 RGE_RS02410 a0899b5a428af60c4afe7bc7941a7179 408 Gene3D G3DSA:3.30.460.10 4 123 1.3E-30 T 26-04-2016 RGE_RS00875 0e25fb204ef714b964d8eaa8a0049363 172 SUPERFAMILY SSF55154 3 167 1.01E-31 T 26-04-2016 IPR033469 CYTH-like domain RGE_RS00875 0e25fb204ef714b964d8eaa8a0049363 172 SMART SM01118 2 170 1.5E-10 T 26-04-2016 IPR023577 CYTH domain RGE_RS00875 0e25fb204ef714b964d8eaa8a0049363 172 PANTHER PTHR21028:SF2 1 167 1.7E-37 T 26-04-2016 RGE_RS00875 0e25fb204ef714b964d8eaa8a0049363 172 ProDom PD009560 CYCLASE ADENYLATE CYCLASE ADENYLYL CYAB LYASE CLASS CYAB-TYPE THERMOPHILIC MJ0240 33 131 3.0E-6 T 26-04-2016 RGE_RS00875 0e25fb204ef714b964d8eaa8a0049363 172 Pfam PF01928 CYTH domain 3 164 6.5E-18 T 26-04-2016 IPR023577 CYTH domain RGE_RS00875 0e25fb204ef714b964d8eaa8a0049363 172 Gene3D G3DSA:2.40.320.10 3 167 6.9E-35 T 26-04-2016 IPR023577 CYTH domain RGE_RS00875 0e25fb204ef714b964d8eaa8a0049363 172 PANTHER PTHR21028 1 167 1.7E-37 T 26-04-2016 RGE_RS17520 2ef300394b6369fcee64a199a4642820 350 SUPERFAMILY SSF55326 18 167 3.66E-34 T 26-04-2016 RGE_RS17520 2ef300394b6369fcee64a199a4642820 350 PANTHER PTHR30303:SF0 12 350 1.3E-151 T 26-04-2016 RGE_RS17520 2ef300394b6369fcee64a199a4642820 350 Pfam PF02769 AIR synthase related protein, C-terminal domain 174 326 2.6E-30 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS17520 2ef300394b6369fcee64a199a4642820 350 SUPERFAMILY SSF56042 169 346 5.68E-47 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS17520 2ef300394b6369fcee64a199a4642820 350 Pfam PF00586 AIR synthase related protein, N-terminal domain 49 161 4.2E-16 T 26-04-2016 IPR016188 PurM-like, N-terminal domain RGE_RS17520 2ef300394b6369fcee64a199a4642820 350 PANTHER PTHR30303 12 350 1.3E-151 T 26-04-2016 RGE_RS17520 2ef300394b6369fcee64a199a4642820 350 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 15 350 2.5E-136 T 26-04-2016 IPR011854 Hydrogenase expression/formation protein HypE RGE_RS17520 2ef300394b6369fcee64a199a4642820 350 Gene3D G3DSA:3.90.650.10 172 327 3.7E-26 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS17520 2ef300394b6369fcee64a199a4642820 350 Gene3D G3DSA:3.30.1330.10 29 167 1.9E-25 T 26-04-2016 IPR016188 PurM-like, N-terminal domain RGE_RS17520 2ef300394b6369fcee64a199a4642820 350 PIRSF PIRSF005644 12 350 4.2E-123 T 26-04-2016 IPR011854 Hydrogenase expression/formation protein HypE RGE_RS13460 38642434e4b2f630a8cec9aafaa892e5 258 PANTHER PTHR13832 6 255 2.0E-23 T 26-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 RGE_RS13460 38642434e4b2f630a8cec9aafaa892e5 258 SMART SM00332 4 252 2.7E-5 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS13460 38642434e4b2f630a8cec9aafaa892e5 258 Gene3D G3DSA:3.60.40.10 12 254 1.7E-45 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS13460 38642434e4b2f630a8cec9aafaa892e5 258 SUPERFAMILY SSF81606 12 254 6.41E-45 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS13460 38642434e4b2f630a8cec9aafaa892e5 258 Pfam PF13672 Protein phosphatase 2C 20 212 6.3E-11 T 26-04-2016 RGE_RS13460 38642434e4b2f630a8cec9aafaa892e5 258 SMART SM00331 23 254 6.8E-14 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS13460 38642434e4b2f630a8cec9aafaa892e5 258 PANTHER PTHR13832:SF226 6 255 2.0E-23 T 26-04-2016 RGE_RS06500 9f67a0b90244124de213b3ec29f549b2 482 Gene3D G3DSA:3.40.50.620 339 481 2.9E-17 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS06500 9f67a0b90244124de213b3ec29f549b2 482 SUPERFAMILY SSF56112 12 284 6.07E-54 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS06500 9f67a0b90244124de213b3ec29f549b2 482 PANTHER PTHR24362:SF160 18 308 1.3E-60 T 26-04-2016 RGE_RS06500 9f67a0b90244124de213b3ec29f549b2 482 PRINTS PR01438 Universal stress protein signature 442 454 3.6E-7 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS06500 9f67a0b90244124de213b3ec29f549b2 482 PRINTS PR01438 Universal stress protein signature 459 481 3.6E-7 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS06500 9f67a0b90244124de213b3ec29f549b2 482 SUPERFAMILY SSF52402 340 481 7.28E-16 T 26-04-2016 RGE_RS06500 9f67a0b90244124de213b3ec29f549b2 482 SMART SM00220 22 287 4.3E-19 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS06500 9f67a0b90244124de213b3ec29f549b2 482 PANTHER PTHR24362 18 308 1.3E-60 T 26-04-2016 RGE_RS06500 9f67a0b90244124de213b3ec29f549b2 482 Gene3D G3DSA:3.30.200.20 9 136 5.3E-9 T 26-04-2016 RGE_RS06500 9f67a0b90244124de213b3ec29f549b2 482 Pfam PF00069 Protein kinase domain 77 278 1.2E-26 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS06500 9f67a0b90244124de213b3ec29f549b2 482 Pfam PF00582 Universal stress protein family 339 481 8.2E-16 T 26-04-2016 IPR006016 UspA GO:0006950 RGE_RS06500 9f67a0b90244124de213b3ec29f549b2 482 Gene3D G3DSA:1.10.510.10 137 286 1.2E-34 T 26-04-2016 RGE_RS21510 b9e353a0da5de0a7dda8e22f29084826 322 TIGRFAM TIGR00510 lipA: lipoyl synthase 32 314 9.1E-131 T 26-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RGE_RS21510 b9e353a0da5de0a7dda8e22f29084826 322 SUPERFAMILY SSF102114 52 316 1.57E-68 T 26-04-2016 RGE_RS21510 b9e353a0da5de0a7dda8e22f29084826 322 Pfam PF04055 Radical SAM superfamily 90 249 1.6E-15 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS21510 b9e353a0da5de0a7dda8e22f29084826 322 SMART SM00729 83 291 9.8E-19 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS21510 b9e353a0da5de0a7dda8e22f29084826 322 Hamap MF_00206 Lipoyl synthase [lipA]. 1 322 154.58 T 26-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RGE_RS21510 b9e353a0da5de0a7dda8e22f29084826 322 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 19 72 1.2E-6 T 26-04-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RGE_RS21510 b9e353a0da5de0a7dda8e22f29084826 322 Gene3D G3DSA:3.20.20.70 52 313 1.5E-75 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS21510 b9e353a0da5de0a7dda8e22f29084826 322 PIRSF PIRSF005963 2 321 9.1E-128 T 26-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RGE_RS21510 b9e353a0da5de0a7dda8e22f29084826 322 PANTHER PTHR10949 32 313 3.4E-159 T 26-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RGE_RS19050 8cd505936def6b5d056881843193ce58 394 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 SUPERFAMILY SSF69279 225 412 4.25E-13 T 26-04-2016 RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 694 841 1.4E-42 T 26-04-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 Gene3D G3DSA:2.40.50.230 418 500 5.0E-31 T 26-04-2016 IPR006531 Gp5 N-terminal RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 24 555 2.0E-109 T 26-04-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 PANTHER PTHR32305 205 907 3.4E-68 T 26-04-2016 RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 PANTHER PTHR32305 1 189 3.4E-68 T 26-04-2016 RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 35 557 3.2E-88 T 26-04-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 PANTHER PTHR32305:SF7 205 907 3.4E-68 T 26-04-2016 RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 PANTHER PTHR32305:SF7 1 189 3.4E-68 T 26-04-2016 RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 Gene3D G3DSA:3.55.50.10 111 212 1.4E-29 T 26-04-2016 RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 SUPERFAMILY SSF69255 411 501 9.15E-26 T 26-04-2016 RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 SUPERFAMILY SSF69279 24 208 1.3E-48 T 26-04-2016 RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 531 643 2.1E-29 T 26-04-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 SUPERFAMILY SSF69349 491 556 1.1E-6 T 26-04-2016 RGE_RS12555 404afae33b55834ced293ba8bf0fdd16 931 Pfam PF05954 Phage late control gene D protein (GPD) 43 373 5.6E-78 T 26-04-2016 RGE_RS05625 8d8f79bf9967e6dcb85d15fcea343d0e 196 Pfam PF00384 Molybdopterin oxidoreductase 108 141 2.1E-5 T 26-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RGE_RS05625 8d8f79bf9967e6dcb85d15fcea343d0e 196 PANTHER PTHR11615 46 196 1.1E-84 T 26-04-2016 RGE_RS05625 8d8f79bf9967e6dcb85d15fcea343d0e 196 Gene3D G3DSA:3.40.50.740 110 186 1.9E-13 T 26-04-2016 RGE_RS05625 8d8f79bf9967e6dcb85d15fcea343d0e 196 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 45 105 1.0E-19 T 26-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RGE_RS05625 8d8f79bf9967e6dcb85d15fcea343d0e 196 Gene3D G3DSA:2.20.25.90 38 109 5.1E-26 T 26-04-2016 RGE_RS05625 8d8f79bf9967e6dcb85d15fcea343d0e 196 SUPERFAMILY SSF53706 37 196 1.44E-53 T 26-04-2016 RGE_RS05625 8d8f79bf9967e6dcb85d15fcea343d0e 196 SMART SM00926 44 105 2.0E-23 T 26-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RGE_RS05625 8d8f79bf9967e6dcb85d15fcea343d0e 196 PANTHER PTHR11615:SF126 46 196 1.1E-84 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 SUPERFAMILY SSF54862 93 232 1.13E-37 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 210 221 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 167 178 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Gene3D G3DSA:3.30.70.20 217 248 7.0E-4 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 SUPERFAMILY SSF53706 237 766 6.94E-191 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Gene3D G3DSA:3.40.50.740 565 768 1.2E-85 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Gene3D G3DSA:3.40.50.740 294 371 1.2E-85 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 SUPERFAMILY SSF50692 778 921 3.16E-41 T 26-04-2016 IPR009010 Aspartate decarboxylase-like domain RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 238 289 2.9E-16 T 26-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 SMART SM00926 237 291 2.9E-16 T 26-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Pfam PF01568 Molydopterin dinucleotide binding domain 811 915 5.1E-28 T 26-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 PANTHER PTHR11615:SF112 21 69 1.3E-234 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 PANTHER PTHR11615:SF112 540 939 1.3E-234 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 PANTHER PTHR11615:SF112 236 494 1.3E-234 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Gene3D G3DSA:3.30.70.20 151 216 1.6E-14 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 242 919 2.1E-273 T 26-04-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Pfam PF00384 Molybdopterin oxidoreductase 294 726 9.6E-71 T 26-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Gene3D G3DSA:3.10.20.30 14 73 1.8E-8 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Gene3D G3DSA:2.20.25.90 249 292 2.6E-19 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Gene3D G3DSA:2.40.40.20 769 922 9.1E-40 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 SMART SM00929 101 141 4.9E-17 T 26-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 242 260 - T 26-04-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Gene3D G3DSA:3.40.228.10 372 564 7.9E-55 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 SUPERFAMILY SSF54292 19 92 1.1E-18 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Pfam PF00037 4Fe-4S binding domain 207 223 1.4E-5 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 PIRSF PIRSF036643 15 954 0.0 T 26-04-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 101 140 3.2E-15 T 26-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 18 95 1.2E-22 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 PANTHER PTHR11615 21 69 1.3E-234 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 PANTHER PTHR11615 540 939 1.3E-234 T 26-04-2016 RGE_RS17905 adab7c70d207bcb2319472f0580912f5 954 PANTHER PTHR11615 236 494 1.3E-234 T 26-04-2016 RGE_RS05295 64b518a936b78e50f2af297acef3c832 379 SUPERFAMILY SSF53756 21 365 5.89E-44 T 26-04-2016 RGE_RS05295 64b518a936b78e50f2af297acef3c832 379 Pfam PF13692 Glycosyl transferases group 1 199 336 4.4E-17 T 26-04-2016 RGE_RS05295 64b518a936b78e50f2af297acef3c832 379 Gene3D G3DSA:3.40.50.2000 158 348 2.0E-13 T 26-04-2016 RGE_RS05295 64b518a936b78e50f2af297acef3c832 379 Pfam PF13439 Glycosyltransferase Family 4 21 172 9.7E-7 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS05295 64b518a936b78e50f2af297acef3c832 379 PANTHER PTHR12526 133 375 8.6E-35 T 26-04-2016 RGE_RS11285 25979358e4349b01bc794b62d5a5a852 506 Gene3D G3DSA:3.40.810.20 238 478 1.4E-71 T 26-04-2016 RGE_RS11285 25979358e4349b01bc794b62d5a5a852 506 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 40 504 9.1E-230 T 26-04-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 RGE_RS11285 25979358e4349b01bc794b62d5a5a852 506 PIRSF PIRSF009451 4 506 1.9E-240 T 26-04-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 RGE_RS11285 25979358e4349b01bc794b62d5a5a852 506 PANTHER PTHR40596 1 506 9.5E-274 T 26-04-2016 RGE_RS11285 25979358e4349b01bc794b62d5a5a852 506 SUPERFAMILY SSF100950 9 234 2.09E-75 T 26-04-2016 RGE_RS11285 25979358e4349b01bc794b62d5a5a852 506 SUPERFAMILY SSF100950 239 504 1.12E-60 T 26-04-2016 RGE_RS11285 25979358e4349b01bc794b62d5a5a852 506 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 36 505 1.0E-222 T 26-04-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 RGE_RS11285 25979358e4349b01bc794b62d5a5a852 506 Gene3D G3DSA:3.40.1080.10 7 234 1.4E-103 T 26-04-2016 RGE_RS06625 ea997ef9267d2858ae49299c43d53d8b 117 PRINTS PR00061 Ribosomal protein L19 signature 36 65 4.4E-36 T 26-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06625 ea997ef9267d2858ae49299c43d53d8b 117 PRINTS PR00061 Ribosomal protein L19 signature 6 35 4.4E-36 T 26-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06625 ea997ef9267d2858ae49299c43d53d8b 117 PRINTS PR00061 Ribosomal protein L19 signature 90 115 4.4E-36 T 26-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06625 ea997ef9267d2858ae49299c43d53d8b 117 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 116 30.72 T 26-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06625 ea997ef9267d2858ae49299c43d53d8b 117 SUPERFAMILY SSF50104 2 116 1.1E-44 T 26-04-2016 IPR008991 Translation protein SH3-like domain RGE_RS06625 ea997ef9267d2858ae49299c43d53d8b 117 PIRSF PIRSF002191 1 117 4.9E-51 T 26-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06625 ea997ef9267d2858ae49299c43d53d8b 117 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 2 115 1.3E-49 T 26-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06625 ea997ef9267d2858ae49299c43d53d8b 117 Pfam PF01245 Ribosomal protein L19 3 115 9.9E-48 T 26-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06625 ea997ef9267d2858ae49299c43d53d8b 117 ProSitePatterns PS01015 Ribosomal protein L19 signature. 88 103 - T 26-04-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06625 ea997ef9267d2858ae49299c43d53d8b 117 PANTHER PTHR15680 2 117 6.4E-54 T 26-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS17130 006290675a7a95a7da1b244ef8782a0b 294 Pfam PF00892 EamA-like transporter family 154 285 8.6E-21 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS17130 006290675a7a95a7da1b244ef8782a0b 294 Pfam PF00892 EamA-like transporter family 10 135 3.2E-18 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS17130 006290675a7a95a7da1b244ef8782a0b 294 SUPERFAMILY SSF103481 39 139 2.75E-17 T 26-04-2016 RGE_RS17130 006290675a7a95a7da1b244ef8782a0b 294 PANTHER PTHR12715:SF17 4 294 5.1E-70 T 26-04-2016 RGE_RS17130 006290675a7a95a7da1b244ef8782a0b 294 PANTHER PTHR12715 4 294 5.1E-70 T 26-04-2016 RGE_RS17130 006290675a7a95a7da1b244ef8782a0b 294 SUPERFAMILY SSF103481 191 285 1.7E-15 T 26-04-2016 RGE_RS18265 cbd3cf067d9708f395e53e3e7df28d0f 354 Pfam PF01339 CheB methylesterase 172 350 1.6E-60 T 26-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS18265 cbd3cf067d9708f395e53e3e7df28d0f 354 SUPERFAMILY SSF52172 1 138 2.28E-28 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS18265 cbd3cf067d9708f395e53e3e7df28d0f 354 PIRSF PIRSF000876 1 354 5.8E-128 T 26-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS18265 cbd3cf067d9708f395e53e3e7df28d0f 354 Pfam PF00072 Response regulator receiver domain 6 107 3.1E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS18265 cbd3cf067d9708f395e53e3e7df28d0f 354 Gene3D G3DSA:3.40.50.180 164 352 2.5E-80 T 26-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS18265 cbd3cf067d9708f395e53e3e7df28d0f 354 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 354 37.92 T 26-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS18265 cbd3cf067d9708f395e53e3e7df28d0f 354 PANTHER PTHR24421 1 351 4.9E-197 T 26-04-2016 RGE_RS18265 cbd3cf067d9708f395e53e3e7df28d0f 354 SUPERFAMILY SSF52738 167 352 1.96E-69 T 26-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS18265 cbd3cf067d9708f395e53e3e7df28d0f 354 PANTHER PTHR24421:SF4 1 351 4.9E-197 T 26-04-2016 RGE_RS18265 cbd3cf067d9708f395e53e3e7df28d0f 354 Gene3D G3DSA:3.40.50.2300 2 109 5.2E-28 T 26-04-2016 RGE_RS18265 cbd3cf067d9708f395e53e3e7df28d0f 354 SMART SM00448 4 126 6.0E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 PANTHER PTHR32089:SF63 162 516 6.6E-131 T 26-04-2016 RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 Gene3D G3DSA:1.10.287.950 281 485 1.3E-57 T 26-04-2016 RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 SMART SM00304 213 265 1.2E-6 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 SUPERFAMILY SSF58104 233 514 2.09E-71 T 26-04-2016 RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 335 512 3.6E-56 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 Pfam PF00672 HAMP domain 194 260 1.9E-10 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 PANTHER PTHR32089 162 516 6.6E-131 T 26-04-2016 RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 174 5.1E-17 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 SMART SM00283 266 513 4.5E-91 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 2.3E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 2.3E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 2.3E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS17890 e075a8eabd3b334a14bec77f83a8e164 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 2.3E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS05965 243e75fd7d552b004cec1eb56cc24233 242 SUPERFAMILY SSF52540 8 162 4.17E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05965 243e75fd7d552b004cec1eb56cc24233 242 Gene3D G3DSA:3.40.50.300 11 155 2.1E-6 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07335 56bd0845d8f972b80824b6357d0d7a3f 261 PANTHER PTHR21496 1 258 7.8E-81 T 26-04-2016 RGE_RS07335 56bd0845d8f972b80824b6357d0d7a3f 261 SUPERFAMILY SSF47240 39 233 1.62E-20 T 26-04-2016 IPR009078 Ferritin-like superfamily RGE_RS07335 56bd0845d8f972b80824b6357d0d7a3f 261 Pfam PF04305 Protein of unknown function (DUF455) 14 254 2.2E-96 T 26-04-2016 IPR007402 Protein of unknown function DUF455 RGE_RS07335 56bd0845d8f972b80824b6357d0d7a3f 261 PIRSF PIRSF012318 1 260 1.2E-98 T 26-04-2016 IPR011197 Uncharacterised conserved protein UCP012318 RGE_RS07335 56bd0845d8f972b80824b6357d0d7a3f 261 PANTHER PTHR21496:SF10 1 258 7.8E-81 T 26-04-2016 RGE_RS03220 d9a679561a7292d9b67c3551dc278367 126 PANTHER PTHR12231 15 123 6.6E-13 T 26-04-2016 RGE_RS03220 d9a679561a7292d9b67c3551dc278367 126 Gene3D G3DSA:3.40.250.10 8 125 1.3E-30 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS03220 d9a679561a7292d9b67c3551dc278367 126 SMART SM00450 18 116 9.5E-22 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS03220 d9a679561a7292d9b67c3551dc278367 126 ProSitePatterns PS00380 Rhodanese signature 1. 42 53 - T 26-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 RGE_RS03220 d9a679561a7292d9b67c3551dc278367 126 Pfam PF00581 Rhodanese-like domain 19 112 1.2E-18 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS03220 d9a679561a7292d9b67c3551dc278367 126 SUPERFAMILY SSF52821 7 120 3.8E-32 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS18200 2a4f8cd4c87bd8c8f52ee8c9e9fa834a 965 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 62 113 1.8E-7 T 26-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RGE_RS18200 2a4f8cd4c87bd8c8f52ee8c9e9fa834a 965 PANTHER PTHR22773 1 581 3.8E-210 T 26-04-2016 RGE_RS18200 2a4f8cd4c87bd8c8f52ee8c9e9fa834a 965 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 306 318 4.3E-34 T 26-04-2016 RGE_RS18200 2a4f8cd4c87bd8c8f52ee8c9e9fa834a 965 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 4.3E-34 T 26-04-2016 RGE_RS18200 2a4f8cd4c87bd8c8f52ee8c9e9fa834a 965 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 75 100 4.3E-34 T 26-04-2016 RGE_RS18200 2a4f8cd4c87bd8c8f52ee8c9e9fa834a 965 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 150 171 4.3E-34 T 26-04-2016 RGE_RS18200 2a4f8cd4c87bd8c8f52ee8c9e9fa834a 965 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 238 264 4.3E-34 T 26-04-2016 RGE_RS18200 2a4f8cd4c87bd8c8f52ee8c9e9fa834a 965 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 103 123 4.3E-34 T 26-04-2016 RGE_RS18200 2a4f8cd4c87bd8c8f52ee8c9e9fa834a 965 Pfam PF00361 Proton-conducting membrane transporter 126 402 3.4E-66 T 26-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RGE_RS18200 2a4f8cd4c87bd8c8f52ee8c9e9fa834a 965 Pfam PF13244 Domain of unknown function (DUF4040) 616 680 7.3E-20 T 26-04-2016 IPR025383 Domain of unknown function DUF4040 RGE_RS18200 2a4f8cd4c87bd8c8f52ee8c9e9fa834a 965 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 820 941 1.7E-30 T 26-04-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein RGE_RS18200 2a4f8cd4c87bd8c8f52ee8c9e9fa834a 965 PANTHER PTHR22773:SF46 1 581 3.8E-210 T 26-04-2016 RGE_RS14200 4d04183964a07ca8c49ddfee631acdc6 372 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 362 1.7E-56 T 26-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 RGE_RS14200 4d04183964a07ca8c49ddfee631acdc6 372 PANTHER PTHR33529 1 372 3.7E-50 T 26-04-2016 RGE_RS14200 4d04183964a07ca8c49ddfee631acdc6 372 PANTHER PTHR33529:SF1 1 372 3.7E-50 T 26-04-2016 RGE_RS14200 4d04183964a07ca8c49ddfee631acdc6 372 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 367 9.5E-94 T 26-04-2016 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 PANTHER PTHR11371 18 637 2.2E-192 T 26-04-2016 IPR016202 Deoxyribonuclease I GO:0004536|GO:0006308 RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 PANTHER PTHR11371 656 813 2.2E-192 T 26-04-2016 IPR016202 Deoxyribonuclease I GO:0004536|GO:0006308 RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 Pfam PF00932 Lamin Tail Domain 20 129 7.5E-17 T 26-04-2016 IPR001322 Lamin Tail Domain RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 Gene3D G3DSA:2.150.10.10 31 38 5.2E-16 T 26-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 Gene3D G3DSA:2.150.10.10 805 870 5.2E-16 T 26-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 SUPERFAMILY SSF74853 19 121 1.83E-5 T 26-04-2016 IPR001322 Lamin Tail Domain RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 Gene3D G3DSA:3.60.10.10 475 800 4.2E-36 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 515 773 1.1E-10 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 SUPERFAMILY SSF56219 519 800 2.72E-34 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 SUPERFAMILY SSF56219 472 488 2.72E-34 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 SUPERFAMILY SSF51120 794 876 1.19E-13 T 26-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 PANTHER PTHR11371:SF31 18 637 2.2E-192 T 26-04-2016 RGE_RS07750 6ce891f66bed6dfed0330af7b4299c28 930 PANTHER PTHR11371:SF31 656 813 2.2E-192 T 26-04-2016 RGE_RS20205 4713fa5aa42f61fec8bf49f3f453e91b 197 PANTHER PTHR30576 1 194 2.2E-68 T 26-04-2016 RGE_RS20205 4713fa5aa42f61fec8bf49f3f453e91b 197 Pfam PF02397 Bacterial sugar transferase 3 194 6.7E-52 T 26-04-2016 IPR003362 Bacterial sugar transferase RGE_RS16240 a017a3c4fc8a727639411198002b4434 255 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 255 36.456 T 26-04-2016 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RGE_RS16240 a017a3c4fc8a727639411198002b4434 255 PANTHER PTHR30457 1 242 2.7E-78 T 26-04-2016 RGE_RS16240 a017a3c4fc8a727639411198002b4434 255 Pfam PF01975 Survival protein SurE 3 188 1.7E-51 T 26-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RGE_RS16240 a017a3c4fc8a727639411198002b4434 255 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 238 3.3E-63 T 26-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RGE_RS16240 a017a3c4fc8a727639411198002b4434 255 Gene3D G3DSA:3.40.1210.10 1 243 1.6E-79 T 26-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RGE_RS16240 a017a3c4fc8a727639411198002b4434 255 SUPERFAMILY SSF64167 1 248 7.85E-79 T 26-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RGE_RS05555 302fc783ced22006bac0e5804b398229 308 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 140 7.1E-32 T 26-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RGE_RS05555 302fc783ced22006bac0e5804b398229 308 PIRSF PIRSF000102 1 307 3.5E-82 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS05555 302fc783ced22006bac0e5804b398229 308 SUPERFAMILY SSF51735 1 143 1.19E-36 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05555 302fc783ced22006bac0e5804b398229 308 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 144 303 8.2E-16 T 26-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RGE_RS05555 302fc783ced22006bac0e5804b398229 308 PANTHER PTHR11540:SF3 1 302 1.2E-86 T 26-04-2016 RGE_RS05555 302fc783ced22006bac0e5804b398229 308 PANTHER PTHR11540 1 302 1.2E-86 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS05555 302fc783ced22006bac0e5804b398229 308 Gene3D G3DSA:3.90.110.10 143 304 1.2E-42 T 26-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RGE_RS05555 302fc783ced22006bac0e5804b398229 308 Gene3D G3DSA:3.40.50.720 1 141 5.0E-38 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05555 302fc783ced22006bac0e5804b398229 308 PRINTS PR00086 L-lactate dehydrogenase signature 169 182 9.9E-24 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS05555 302fc783ced22006bac0e5804b398229 308 PRINTS PR00086 L-lactate dehydrogenase signature 27 51 9.9E-24 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS05555 302fc783ced22006bac0e5804b398229 308 PRINTS PR00086 L-lactate dehydrogenase signature 139 157 9.9E-24 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS05555 302fc783ced22006bac0e5804b398229 308 PRINTS PR00086 L-lactate dehydrogenase signature 2 26 9.9E-24 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS05555 302fc783ced22006bac0e5804b398229 308 PRINTS PR00086 L-lactate dehydrogenase signature 115 135 9.9E-24 T 26-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RGE_RS05555 302fc783ced22006bac0e5804b398229 308 SUPERFAMILY SSF56327 143 305 1.81E-42 T 26-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RGE_RS13860 a750eec4c5091bc051231c9aac341feb 304 PANTHER PTHR11135:SF1 2 289 1.1E-118 T 26-04-2016 IPR005911 Protein YhcC-like GO:0051536 RGE_RS13860 a750eec4c5091bc051231c9aac341feb 304 Pfam PF16199 Radical_SAM C-terminal domain 208 277 3.2E-14 T 26-04-2016 IPR032432 Radical SAM, C-terminal extension RGE_RS13860 a750eec4c5091bc051231c9aac341feb 304 PANTHER PTHR11135 2 289 1.1E-118 T 26-04-2016 RGE_RS13860 a750eec4c5091bc051231c9aac341feb 304 SMART SM00729 23 246 2.0E-45 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS13860 a750eec4c5091bc051231c9aac341feb 304 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 7 300 2.8E-107 T 26-04-2016 IPR005911 Protein YhcC-like GO:0051536 RGE_RS13860 a750eec4c5091bc051231c9aac341feb 304 Pfam PF04055 Radical SAM superfamily 32 201 6.0E-17 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS13860 a750eec4c5091bc051231c9aac341feb 304 Gene3D G3DSA:3.80.30.20 24 233 9.2E-33 T 26-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RGE_RS13860 a750eec4c5091bc051231c9aac341feb 304 SUPERFAMILY SSF102114 12 253 1.11E-46 T 26-04-2016 RGE_RS00350 2fb4d9b4ef3b7d489c623d0ac4f062ef 299 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 26 225 9.9E-28 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS00350 2fb4d9b4ef3b7d489c623d0ac4f062ef 299 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 26 296 8.8E-64 T 26-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS00350 2fb4d9b4ef3b7d489c623d0ac4f062ef 299 PIRSF PIRSF005917 15 299 2.6E-88 T 26-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS00350 2fb4d9b4ef3b7d489c623d0ac4f062ef 299 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 25 246 32.85 T 26-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS00350 2fb4d9b4ef3b7d489c623d0ac4f062ef 299 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 103 114 - T 26-04-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS00350 2fb4d9b4ef3b7d489c623d0ac4f062ef 299 Gene3D G3DSA:3.30.950.10 134 245 5.9E-32 T 26-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RGE_RS00350 2fb4d9b4ef3b7d489c623d0ac4f062ef 299 PANTHER PTHR21091:SF18 24 241 5.8E-68 T 26-04-2016 RGE_RS00350 2fb4d9b4ef3b7d489c623d0ac4f062ef 299 Gene3D G3DSA:3.40.1010.10 25 133 2.7E-14 T 26-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RGE_RS00350 2fb4d9b4ef3b7d489c623d0ac4f062ef 299 PANTHER PTHR21091 24 241 5.8E-68 T 26-04-2016 RGE_RS00350 2fb4d9b4ef3b7d489c623d0ac4f062ef 299 SUPERFAMILY SSF53790 24 244 4.45E-70 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 PANTHER PTHR22594:SF4 3 491 3.1E-262 T 26-04-2016 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 Gene3D G3DSA:3.30.930.10 145 487 1.7E-117 T 26-04-2016 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 Gene3D G3DSA:2.40.50.140 5 142 3.2E-50 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 SUPERFAMILY SSF55681 150 489 7.01E-118 T 26-04-2016 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 10 491 43.61 T 26-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 PANTHER PTHR22594 3 491 3.1E-262 T 26-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 PRINTS PR00982 Lysyl-tRNA synthetase signature 373 389 1.5E-39 T 26-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 PRINTS PR00982 Lysyl-tRNA synthetase signature 232 245 1.5E-39 T 26-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 PRINTS PR00982 Lysyl-tRNA synthetase signature 203 219 1.5E-39 T 26-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 PRINTS PR00982 Lysyl-tRNA synthetase signature 250 267 1.5E-39 T 26-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 PRINTS PR00982 Lysyl-tRNA synthetase signature 187 197 1.5E-39 T 26-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 Pfam PF00152 tRNA synthetases class II (D, K and N) 151 488 1.3E-80 T 26-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 SUPERFAMILY SSF50249 3 143 1.65E-44 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 5 490 4.4E-197 T 26-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 RGE_RS20260 7154bcff0ba56273d25a4cc246d6d2a8 492 Pfam PF01336 OB-fold nucleic acid binding domain 57 134 2.4E-15 T 26-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RGE_RS02250 d2626a453b024e42fd87bdbe827219c1 172 Pfam PF01327 Polypeptide deformylase 5 153 2.7E-51 T 26-04-2016 IPR023635 Peptide deformylase RGE_RS02250 d2626a453b024e42fd87bdbe827219c1 172 PANTHER PTHR10458 1 169 3.0E-81 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS02250 d2626a453b024e42fd87bdbe827219c1 172 SUPERFAMILY SSF56420 3 164 8.24E-60 T 26-04-2016 IPR023635 Peptide deformylase RGE_RS02250 d2626a453b024e42fd87bdbe827219c1 172 PRINTS PR01576 Peptide deformylase signature 33 62 3.4E-34 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS02250 d2626a453b024e42fd87bdbe827219c1 172 PRINTS PR01576 Peptide deformylase signature 90 101 3.4E-34 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS02250 d2626a453b024e42fd87bdbe827219c1 172 PRINTS PR01576 Peptide deformylase signature 121 150 3.4E-34 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS02250 d2626a453b024e42fd87bdbe827219c1 172 PRINTS PR01576 Peptide deformylase signature 102 120 3.4E-34 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS02250 d2626a453b024e42fd87bdbe827219c1 172 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 160 2.8E-55 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS02250 d2626a453b024e42fd87bdbe827219c1 172 PIRSF PIRSF004749 1 170 7.5E-56 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS02250 d2626a453b024e42fd87bdbe827219c1 172 Hamap MF_00163 Peptide deformylase [def]. 2 163 29.512 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS02250 d2626a453b024e42fd87bdbe827219c1 172 Gene3D G3DSA:3.90.45.10 4 166 8.6E-64 T 26-04-2016 IPR023635 Peptide deformylase RGE_RS02250 d2626a453b024e42fd87bdbe827219c1 172 PANTHER PTHR10458:SF10 1 169 3.0E-81 T 26-04-2016 RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1161 0.0 T 26-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 SUPERFAMILY SSF52540 1 213 1.16E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 SUPERFAMILY SSF52540 1047 1161 1.16E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1163 22.336 T 26-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 Gene3D G3DSA:3.40.50.300 1 187 2.7E-77 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 Gene3D G3DSA:3.40.50.300 321 322 2.7E-77 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 Gene3D G3DSA:3.40.50.300 1054 1163 2.7E-77 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 Pfam PF06470 SMC proteins Flexible Hinge Domain 525 623 2.2E-7 T 26-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 SUPERFAMILY SSF75553 485 671 1.83E-8 T 26-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1154 4.2E-63 T 26-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 PANTHER PTHR18937:SF261 1 1165 5.4E-259 T 26-04-2016 RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 PANTHER PTHR18937 1 1165 5.4E-259 T 26-04-2016 RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 SMART SM00968 518 624 1.2E-6 T 26-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 RGE_RS11745 a9c7c9d8badfdf3e28116414ad7ab3fc 1171 PIRSF PIRSF005719 1 1169 5.7E-245 T 26-04-2016 IPR024704 Structural maintenance of chromosomes protein RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 322 512 3.9E-56 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 PANTHER PTHR32089:SF63 188 516 3.9E-131 T 26-04-2016 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 PANTHER PTHR32089:SF63 48 145 3.9E-131 T 26-04-2016 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 173 4.7E-17 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 SUPERFAMILY SSF58104 233 514 2.35E-71 T 26-04-2016 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 PANTHER PTHR32089 188 516 3.9E-131 T 26-04-2016 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 PANTHER PTHR32089 48 145 3.9E-131 T 26-04-2016 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 SMART SM00283 266 513 6.8E-89 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 Gene3D G3DSA:1.10.287.950 281 485 5.2E-58 T 26-04-2016 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 5.0E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 5.0E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 5.0E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 5.0E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 SMART SM00304 213 265 4.3E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS17885 7c17f35e05f3530b00c32a3582716b0f 517 Pfam PF00672 HAMP domain 194 261 1.6E-13 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS01505 09d0068e4daa651fa82956445f53f40a 262 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 26-04-2016 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 RGE_RS01505 09d0068e4daa651fa82956445f53f40a 262 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 262 36.539 T 26-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 RGE_RS01505 09d0068e4daa651fa82956445f53f40a 262 Gene3D G3DSA:3.20.20.70 1 261 2.2E-107 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS01505 09d0068e4daa651fa82956445f53f40a 262 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 259 1.3E-94 T 26-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 RGE_RS01505 09d0068e4daa651fa82956445f53f40a 262 PANTHER PTHR22854:SF2 1 262 2.9E-107 T 26-04-2016 RGE_RS01505 09d0068e4daa651fa82956445f53f40a 262 SUPERFAMILY SSF51366 12 261 1.29E-86 T 26-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RGE_RS01505 09d0068e4daa651fa82956445f53f40a 262 PANTHER PTHR22854 1 262 2.9E-107 T 26-04-2016 RGE_RS06260 f864ac254c4c3510ec8c688d0ced2547 344 SUPERFAMILY SSF56935 23 344 9.16E-11 T 26-04-2016 RGE_RS06260 f864ac254c4c3510ec8c688d0ced2547 344 Gene3D G3DSA:2.40.160.20 195 317 4.1E-5 T 26-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RGE_RS06260 f864ac254c4c3510ec8c688d0ced2547 344 Pfam PF07642 Putative beta-barrel porin-2, OmpL-like. bbp2 13 344 9.1E-41 T 26-04-2016 IPR011486 Putative beta-barrel porin-2, OmpL-like. bbp2 RGE_RS02235 8751557b6b21357f175f5f488c615fb6 150 PANTHER PTHR38692:SF1 1 150 1.8E-32 T 26-04-2016 RGE_RS02235 8751557b6b21357f175f5f488c615fb6 150 PANTHER PTHR38692 1 150 1.8E-32 T 26-04-2016 RGE_RS02235 8751557b6b21357f175f5f488c615fb6 150 Pfam PF04361 Protein of unknown function (DUF494) 1 150 1.6E-56 T 26-04-2016 IPR007456 Smg RGE_RS02235 8751557b6b21357f175f5f488c615fb6 150 Gene3D G3DSA:1.10.10.10 22 46 3.3E-4 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02235 8751557b6b21357f175f5f488c615fb6 150 Hamap MF_00598 Protein Smg [smg]. 1 150 25.781 T 26-04-2016 IPR007456 Smg RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 Gene3D G3DSA:3.30.230.10 472 586 3.8E-47 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 SMART SM00889 468 586 3.3E-59 T 26-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 SUPERFAMILY SSF54211 467 587 4.05E-42 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 SUPERFAMILY SSF54980 591 681 2.59E-21 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 PANTHER PTHR23115 1 176 3.6E-190 T 26-04-2016 RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 PANTHER PTHR23115 217 222 3.6E-190 T 26-04-2016 RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 PANTHER PTHR23115 289 680 3.6E-190 T 26-04-2016 RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 PANTHER PTHR23115 239 267 3.6E-190 T 26-04-2016 RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 Gene3D G3DSA:2.40.30.10 295 389 9.9E-21 T 26-04-2016 RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 Gene3D G3DSA:3.30.70.870 392 468 5.5E-23 T 26-04-2016 RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 Gene3D G3DSA:3.40.50.300 13 270 1.2E-47 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 Pfam PF00679 Elongation factor G C-terminus 589 675 3.0E-23 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 SUPERFAMILY SSF52540 11 266 5.14E-62 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 SUPERFAMILY SSF50447 249 381 8.7E-25 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 SMART SM00838 588 676 1.5E-23 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 Pfam PF03764 Elongation factor G, domain IV 467 585 2.9E-41 T 26-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 Gene3D G3DSA:3.30.70.240 587 674 2.6E-23 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 SUPERFAMILY SSF54980 391 467 3.42E-17 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 PANTHER PTHR23115:SF98 1 176 3.6E-190 T 26-04-2016 RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 PANTHER PTHR23115:SF98 217 222 3.6E-190 T 26-04-2016 RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 PANTHER PTHR23115:SF98 289 680 3.6E-190 T 26-04-2016 RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 PANTHER PTHR23115:SF98 239 267 3.6E-190 T 26-04-2016 RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 Pfam PF14492 Elongation Factor G, domain II 392 465 5.4E-19 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS21390 f53d677029668807fb0dfb64da3fa6f6 686 Pfam PF00009 Elongation factor Tu GTP binding domain 14 265 1.5E-32 T 26-04-2016 RGE_RS08945 670d93745e2acc44dd1ec277f2c3d54b 243 PANTHER PTHR26402 6 236 4.2E-77 T 26-04-2016 RGE_RS08945 670d93745e2acc44dd1ec277f2c3d54b 243 Pfam PF00486 Transcriptional regulatory protein, C terminal 162 233 5.6E-15 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS08945 670d93745e2acc44dd1ec277f2c3d54b 243 SMART SM00862 156 233 1.1E-14 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS08945 670d93745e2acc44dd1ec277f2c3d54b 243 PANTHER PTHR26402:SF292 6 236 4.2E-77 T 26-04-2016 RGE_RS08945 670d93745e2acc44dd1ec277f2c3d54b 243 SUPERFAMILY SSF52172 3 129 1.02E-40 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS08945 670d93745e2acc44dd1ec277f2c3d54b 243 Gene3D G3DSA:3.40.50.2300 5 135 6.3E-41 T 26-04-2016 RGE_RS08945 670d93745e2acc44dd1ec277f2c3d54b 243 SUPERFAMILY SSF46894 134 235 8.22E-19 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS08945 670d93745e2acc44dd1ec277f2c3d54b 243 SMART SM00448 6 117 1.0E-41 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08945 670d93745e2acc44dd1ec277f2c3d54b 243 Pfam PF00072 Response regulator receiver domain 9 118 1.6E-28 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08945 670d93745e2acc44dd1ec277f2c3d54b 243 Gene3D G3DSA:1.10.10.10 136 235 5.0E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05440 8e79d9c07150b34437fc3680632faa66 193 PANTHER PTHR35446 2 193 4.8E-98 T 26-04-2016 RGE_RS05440 8e79d9c07150b34437fc3680632faa66 193 Gene3D G3DSA:1.20.1290.10 63 184 6.2E-35 T 26-04-2016 IPR029032 AhpD-like RGE_RS05440 8e79d9c07150b34437fc3680632faa66 193 Pfam PF02627 Carboxymuconolactone decarboxylase family 47 118 3.1E-11 T 26-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RGE_RS05440 8e79d9c07150b34437fc3680632faa66 193 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 4 181 3.6E-69 T 26-04-2016 IPR010195 Uncharacterised peroxidase-related RGE_RS05440 8e79d9c07150b34437fc3680632faa66 193 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 62 94 3.6E-11 T 26-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RGE_RS05440 8e79d9c07150b34437fc3680632faa66 193 Gene3D G3DSA:1.20.5.810 10 62 4.7E-31 T 26-04-2016 RGE_RS05440 8e79d9c07150b34437fc3680632faa66 193 SUPERFAMILY SSF69118 3 189 2.88E-56 T 26-04-2016 IPR029032 AhpD-like RGE_RS05440 8e79d9c07150b34437fc3680632faa66 193 PANTHER PTHR35446:SF2 2 193 4.8E-98 T 26-04-2016 RGE_RS11190 c0dcd7aba945540a7ef1266949526b5b 232 Pfam PF02107 Flagellar L-ring protein 47 227 4.5E-47 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS11190 c0dcd7aba945540a7ef1266949526b5b 232 PRINTS PR01008 Flagellar L-ring protein signature 70 82 1.7E-16 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS11190 c0dcd7aba945540a7ef1266949526b5b 232 PRINTS PR01008 Flagellar L-ring protein signature 192 206 1.7E-16 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS11190 c0dcd7aba945540a7ef1266949526b5b 232 PRINTS PR01008 Flagellar L-ring protein signature 208 222 1.7E-16 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS11190 c0dcd7aba945540a7ef1266949526b5b 232 PRINTS PR01008 Flagellar L-ring protein signature 145 160 1.7E-16 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS11190 c0dcd7aba945540a7ef1266949526b5b 232 PRINTS PR01008 Flagellar L-ring protein signature 171 187 1.7E-16 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS11190 c0dcd7aba945540a7ef1266949526b5b 232 PANTHER PTHR34933 9 232 1.4E-37 T 26-04-2016 RGE_RS11190 c0dcd7aba945540a7ef1266949526b5b 232 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 229 21.413 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS01040 159c17eefe5b8c9fbb7ca3cf0d59e5bc 674 Hamap MF_00983 Probable primosomal protein N' [priA]. 5 674 22.489 T 26-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RGE_RS01040 159c17eefe5b8c9fbb7ca3cf0d59e5bc 674 Gene3D G3DSA:3.40.50.300 136 315 4.1E-36 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01040 159c17eefe5b8c9fbb7ca3cf0d59e5bc 674 SUPERFAMILY SSF52540 436 554 5.18E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01040 159c17eefe5b8c9fbb7ca3cf0d59e5bc 674 SUPERFAMILY SSF52540 155 205 5.18E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01040 159c17eefe5b8c9fbb7ca3cf0d59e5bc 674 TIGRFAM TIGR00595 priA: primosomal protein N' 156 672 8.2E-166 T 26-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RGE_RS01040 159c17eefe5b8c9fbb7ca3cf0d59e5bc 674 Pfam PF00270 DEAD/DEAH box helicase 141 299 6.9E-11 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS01040 159c17eefe5b8c9fbb7ca3cf0d59e5bc 674 SMART SM00487 133 328 1.5E-22 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS01040 159c17eefe5b8c9fbb7ca3cf0d59e5bc 674 Gene3D G3DSA:3.40.50.300 400 577 3.0E-29 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01040 159c17eefe5b8c9fbb7ca3cf0d59e5bc 674 Pfam PF00271 Helicase conserved C-terminal domain 461 528 2.4E-5 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS01040 159c17eefe5b8c9fbb7ca3cf0d59e5bc 674 SMART SM00490 433 530 2.3E-7 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS01040 159c17eefe5b8c9fbb7ca3cf0d59e5bc 674 PANTHER PTHR30580 1 674 2.1E-198 T 26-04-2016 RGE_RS01040 159c17eefe5b8c9fbb7ca3cf0d59e5bc 674 SUPERFAMILY SSF52540 135 308 8.67E-38 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15765 a488d9ae30c1f7429057561c03c9cb30 566 Gene3D G3DSA:3.40.50.970 3 188 4.8E-62 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS15765 a488d9ae30c1f7429057561c03c9cb30 566 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 10 182 3.5E-53 T 26-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RGE_RS15765 a488d9ae30c1f7429057561c03c9cb30 566 PANTHER PTHR18968 1 546 2.2E-227 T 26-04-2016 RGE_RS15765 a488d9ae30c1f7429057561c03c9cb30 566 PANTHER PTHR18968:SF120 1 546 2.2E-227 T 26-04-2016 RGE_RS15765 a488d9ae30c1f7429057561c03c9cb30 566 Gene3D G3DSA:3.40.50.1220 193 343 5.5E-38 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS15765 a488d9ae30c1f7429057561c03c9cb30 566 Gene3D G3DSA:3.40.50.970 367 549 2.9E-53 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS15765 a488d9ae30c1f7429057561c03c9cb30 566 SUPERFAMILY SSF52518 8 191 3.26E-53 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS15765 a488d9ae30c1f7429057561c03c9cb30 566 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 202 337 3.4E-29 T 26-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RGE_RS15765 a488d9ae30c1f7429057561c03c9cb30 566 SUPERFAMILY SSF52467 165 361 7.16E-39 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS15765 a488d9ae30c1f7429057561c03c9cb30 566 SUPERFAMILY SSF52518 368 549 6.97E-52 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS15765 a488d9ae30c1f7429057561c03c9cb30 566 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 392 542 2.5E-37 T 26-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 PANTHER PTHR19375:SF117 9 332 6.2E-178 T 26-04-2016 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 SUPERFAMILY SSF53067 154 337 1.93E-48 T 26-04-2016 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 73 96 1.0E-62 T 26-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 137 156 1.0E-62 T 26-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 53 71 1.0E-62 T 26-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 305 331 1.0E-62 T 26-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 192 212 1.0E-62 T 26-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 Gene3D G3DSA:3.90.640.10 192 264 9.3E-30 T 26-04-2016 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 Gene3D G3DSA:3.30.420.40 165 191 3.9E-33 T 26-04-2016 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 Gene3D G3DSA:3.30.420.40 268 322 3.9E-33 T 26-04-2016 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 Gene3D G3DSA:3.30.420.40 10 164 1.5E-44 T 26-04-2016 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 Pfam PF06723 MreB/Mbl protein 11 340 1.4E-148 T 26-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 PANTHER PTHR19375 9 332 6.2E-178 T 26-04-2016 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 SUPERFAMILY SSF53067 9 153 2.52E-37 T 26-04-2016 RGE_RS22770 14094fa947a011550bbc531f0136cfa4 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 340 2.8E-155 T 26-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RGE_RS11965 a1adef54abc74381cac9267cf32e7f6f 351 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 350 44.174 T 26-04-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 RGE_RS11965 a1adef54abc74381cac9267cf32e7f6f 351 SUPERFAMILY SSF55681 92 351 1.78E-71 T 26-04-2016 RGE_RS11965 a1adef54abc74381cac9267cf32e7f6f 351 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 1.0E-19 T 26-04-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RGE_RS11965 a1adef54abc74381cac9267cf32e7f6f 351 Gene3D G3DSA:3.30.930.10 10 351 3.5E-117 T 26-04-2016 RGE_RS11965 a1adef54abc74381cac9267cf32e7f6f 351 SUPERFAMILY SSF46589 13 99 1.36E-16 T 26-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RGE_RS11965 a1adef54abc74381cac9267cf32e7f6f 351 Pfam PF01409 tRNA synthetases class II core domain (F) 92 350 2.9E-87 T 26-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 RGE_RS11965 a1adef54abc74381cac9267cf32e7f6f 351 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 40 350 5.6E-90 T 26-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RGE_RS11965 a1adef54abc74381cac9267cf32e7f6f 351 PANTHER PTHR11538 92 351 2.6E-83 T 26-04-2016 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 PRINTS PR00834 HtrA/DegQ protease family signature 323 335 3.5E-55 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 PRINTS PR00834 HtrA/DegQ protease family signature 237 254 3.5E-55 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 PRINTS PR00834 HtrA/DegQ protease family signature 180 204 3.5E-55 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 PRINTS PR00834 HtrA/DegQ protease family signature 119 131 3.5E-55 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 PRINTS PR00834 HtrA/DegQ protease family signature 215 232 3.5E-55 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 PRINTS PR00834 HtrA/DegQ protease family signature 140 160 3.5E-55 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 Gene3D G3DSA:2.30.42.10 285 379 2.8E-24 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 SMART SM00228 298 365 9.0E-10 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 Pfam PF13180 PDZ domain 283 371 5.4E-12 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 SUPERFAMILY SSF50494 62 279 2.5E-64 T 26-04-2016 IPR009003 Peptidase S1, PA clan RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 SUPERFAMILY SSF50156 241 364 3.68E-22 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 PANTHER PTHR22939:SF93 61 383 2.1E-127 T 26-04-2016 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 Gene3D G3DSA:2.40.10.10 61 171 8.1E-36 T 26-04-2016 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 Gene3D G3DSA:2.40.10.10 172 284 2.8E-43 T 26-04-2016 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 PANTHER PTHR22939 61 383 2.1E-127 T 26-04-2016 RGE_RS05105 d392adc5dd3eaaf46485386f610b28e6 386 Pfam PF13365 Trypsin-like peptidase domain 110 244 4.0E-33 T 26-04-2016 RGE_RS23030 8052725819baea62621a3b5b58f4ab6f 343 PANTHER PTHR32241:SF3 33 321 3.4E-19 T 26-04-2016 RGE_RS23030 8052725819baea62621a3b5b58f4ab6f 343 Gene3D G3DSA:3.40.1090.10 32 325 5.5E-55 T 26-04-2016 RGE_RS23030 8052725819baea62621a3b5b58f4ab6f 343 PANTHER PTHR32241 33 321 3.4E-19 T 26-04-2016 RGE_RS23030 8052725819baea62621a3b5b58f4ab6f 343 Pfam PF01734 Patatin-like phospholipase 36 218 2.5E-18 T 26-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RGE_RS23030 8052725819baea62621a3b5b58f4ab6f 343 SUPERFAMILY SSF52151 32 324 1.07E-40 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS03930 66ca3960c23a7204398001871264952a 119 SUPERFAMILY SSF54523 39 116 1.36E-16 T 26-04-2016 RGE_RS03930 66ca3960c23a7204398001871264952a 119 SUPERFAMILY SSF54523 7 46 1.3E-5 T 26-04-2016 RGE_RS03930 66ca3960c23a7204398001871264952a 119 Pfam PF13633 Prokaryotic N-terminal methylation site 5 29 9.9E-11 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS03930 66ca3960c23a7204398001871264952a 119 PANTHER PTHR38779 1 119 1.2E-19 T 26-04-2016 RGE_RS03930 66ca3960c23a7204398001871264952a 119 Pfam PF02501 Type II secretion system (T2SS), protein I 40 116 7.6E-25 T 26-04-2016 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 RGE_RS03930 66ca3960c23a7204398001871264952a 119 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS03930 66ca3960c23a7204398001871264952a 119 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 1.7E-8 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS03930 66ca3960c23a7204398001871264952a 119 Gene3D G3DSA:3.30.1300.30 35 114 1.7E-13 T 26-04-2016 RGE_RS03930 66ca3960c23a7204398001871264952a 119 TIGRFAM TIGR01707 gspI: type II secretion system protein I 6 104 3.3E-18 T 26-04-2016 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 RGE_RS21185 3d44009792956faabdfc47fed302682c 536 SUPERFAMILY SSF52096 237 517 2.4E-90 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS21185 3d44009792956faabdfc47fed302682c 536 PANTHER PTHR22855 4 536 0.0 T 26-04-2016 RGE_RS21185 3d44009792956faabdfc47fed302682c 536 Gene3D G3DSA:3.90.226.10 30 272 5.4E-79 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS21185 3d44009792956faabdfc47fed302682c 536 Gene3D G3DSA:3.90.226.10 279 530 1.2E-95 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS21185 3d44009792956faabdfc47fed302682c 536 Pfam PF01039 Carboxyl transferase domain 48 525 1.1E-150 T 26-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS21185 3d44009792956faabdfc47fed302682c 536 PANTHER PTHR22855:SF35 4 536 0.0 T 26-04-2016 RGE_RS21185 3d44009792956faabdfc47fed302682c 536 SUPERFAMILY SSF52096 22 272 1.42E-71 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS04815 1369e7fe1c778dacb2067e3a6c143419 221 PANTHER PTHR10509 63 220 4.1E-43 T 26-04-2016 RGE_RS04815 1369e7fe1c778dacb2067e3a6c143419 221 SUPERFAMILY SSF53335 48 194 7.35E-31 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS04815 1369e7fe1c778dacb2067e3a6c143419 221 PANTHER PTHR10509:SF10 63 220 4.1E-43 T 26-04-2016 RGE_RS04815 1369e7fe1c778dacb2067e3a6c143419 221 Pfam PF13578 Methyltransferase domain 84 187 2.5E-16 T 26-04-2016 RGE_RS04815 1369e7fe1c778dacb2067e3a6c143419 221 Gene3D G3DSA:3.40.50.150 59 191 1.8E-40 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS17555 c126f369f050aeeb2a9d5dfc42520d12 221 Gene3D G3DSA:3.40.50.1000 62 206 1.1E-36 T 26-04-2016 IPR023214 HAD-like domain RGE_RS17555 c126f369f050aeeb2a9d5dfc42520d12 221 Gene3D G3DSA:3.40.50.1000 2 18 1.1E-36 T 26-04-2016 IPR023214 HAD-like domain RGE_RS17555 c126f369f050aeeb2a9d5dfc42520d12 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 94 107 5.5E-9 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS17555 c126f369f050aeeb2a9d5dfc42520d12 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 5.5E-9 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS17555 c126f369f050aeeb2a9d5dfc42520d12 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 125 141 5.5E-9 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS17555 c126f369f050aeeb2a9d5dfc42520d12 221 PANTHER PTHR18901:SF14 2 208 7.2E-44 T 26-04-2016 RGE_RS17555 c126f369f050aeeb2a9d5dfc42520d12 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 179 4.3E-29 T 26-04-2016 IPR023214 HAD-like domain RGE_RS17555 c126f369f050aeeb2a9d5dfc42520d12 221 SUPERFAMILY SSF56784 1 206 6.24E-47 T 26-04-2016 IPR023214 HAD-like domain RGE_RS17555 c126f369f050aeeb2a9d5dfc42520d12 221 Gene3D G3DSA:1.10.150.240 19 61 5.6E-13 T 26-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RGE_RS17555 c126f369f050aeeb2a9d5dfc42520d12 221 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 78 175 3.7E-8 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS17555 c126f369f050aeeb2a9d5dfc42520d12 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 5 178 3.7E-10 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS17555 c126f369f050aeeb2a9d5dfc42520d12 221 PANTHER PTHR18901 2 208 7.2E-44 T 26-04-2016 RGE_RS08410 07bf5ec88b38687cd83e01659e3cebe4 385 PANTHER PTHR30531 1 360 2.7E-103 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS08410 07bf5ec88b38687cd83e01659e3cebe4 385 SUPERFAMILY SSF160544 244 350 3.53E-38 T 26-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal RGE_RS08410 07bf5ec88b38687cd83e01659e3cebe4 385 Gene3D G3DSA:3.40.1690.10 217 351 1.2E-57 T 26-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal RGE_RS08410 07bf5ec88b38687cd83e01659e3cebe4 385 PANTHER PTHR30531:SF0 1 360 2.7E-103 T 26-04-2016 RGE_RS08410 07bf5ec88b38687cd83e01659e3cebe4 385 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 207 225 2.9E-32 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS08410 07bf5ec88b38687cd83e01659e3cebe4 385 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 301 322 2.9E-32 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS08410 07bf5ec88b38687cd83e01659e3cebe4 385 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 9 31 2.9E-32 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS08410 07bf5ec88b38687cd83e01659e3cebe4 385 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 227 244 2.9E-32 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS08410 07bf5ec88b38687cd83e01659e3cebe4 385 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 271 286 2.9E-32 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS08410 07bf5ec88b38687cd83e01659e3cebe4 385 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 346 2.8E-110 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS08410 07bf5ec88b38687cd83e01659e3cebe4 385 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 12 350 1.8E-105 T 26-04-2016 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 RGE_RS22880 8f2a39e7b1f959b2b075ce748b388c4a 389 PANTHER PTHR30572:SF12 12 389 2.7E-128 T 26-04-2016 RGE_RS22880 8f2a39e7b1f959b2b075ce748b388c4a 389 PANTHER PTHR30572 12 389 2.7E-128 T 26-04-2016 RGE_RS22880 8f2a39e7b1f959b2b075ce748b388c4a 389 Pfam PF12704 MacB-like periplasmic core domain 21 229 2.1E-17 T 26-04-2016 IPR025857 MacB-like periplasmic core domain RGE_RS22880 8f2a39e7b1f959b2b075ce748b388c4a 389 Pfam PF02687 FtsX-like permease family 263 380 2.3E-10 T 26-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RGE_RS13985 982df47c153f59fc6349bef20ae91024 416 Gene3D G3DSA:3.40.50.10140 292 375 3.5E-10 T 26-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 RGE_RS13985 982df47c153f59fc6349bef20ae91024 416 SUPERFAMILY SSF52200 289 402 5.36E-17 T 26-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 RGE_RS13985 982df47c153f59fc6349bef20ae91024 416 Pfam PF13676 TIR domain 293 394 1.1E-14 T 26-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 RGE_RS19755 218a3a784a164b77afa03724c33c0d43 364 Gene3D G3DSA:1.10.287.950 129 333 1.1E-54 T 26-04-2016 RGE_RS19755 218a3a784a164b77afa03724c33c0d43 364 Pfam PF00672 HAMP domain 46 109 9.7E-7 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS19755 218a3a784a164b77afa03724c33c0d43 364 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 135 164 3.1E-42 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19755 218a3a784a164b77afa03724c33c0d43 364 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 241 270 3.1E-42 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19755 218a3a784a164b77afa03724c33c0d43 364 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 212 239 3.1E-42 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19755 218a3a784a164b77afa03724c33c0d43 364 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 289 318 3.1E-42 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19755 218a3a784a164b77afa03724c33c0d43 364 PANTHER PTHR32089:SF63 50 364 2.4E-111 T 26-04-2016 RGE_RS19755 218a3a784a164b77afa03724c33c0d43 364 SMART SM00283 114 361 2.8E-78 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS19755 218a3a784a164b77afa03724c33c0d43 364 SUPERFAMILY SSF58104 81 362 1.83E-68 T 26-04-2016 RGE_RS19755 218a3a784a164b77afa03724c33c0d43 364 PANTHER PTHR32089 50 364 2.4E-111 T 26-04-2016 RGE_RS19755 218a3a784a164b77afa03724c33c0d43 364 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 177 360 1.1E-51 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS19755 218a3a784a164b77afa03724c33c0d43 364 SMART SM00304 61 113 0.0092 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS16755 56e2d03bc38761a2b3d3d0fa4d170b54 183 SUPERFAMILY SSF74653 101 165 7.19E-11 T 26-04-2016 RGE_RS16755 56e2d03bc38761a2b3d3d0fa4d170b54 183 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 102 181 2.1E-10 T 26-04-2016 IPR006260 TonB, C-terminal GO:0006810 RGE_RS16755 56e2d03bc38761a2b3d3d0fa4d170b54 183 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 102 178 2.5E-9 T 26-04-2016 IPR006260 TonB, C-terminal GO:0006810 RGE_RS16755 56e2d03bc38761a2b3d3d0fa4d170b54 183 Gene3D G3DSA:3.30.1150.10 96 162 1.1E-6 T 26-04-2016 RGE_RS16000 741ed33f01b89050ca52fe7ec35da025 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 9.0E-26 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16000 741ed33f01b89050ca52fe7ec35da025 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 9.0E-26 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16000 741ed33f01b89050ca52fe7ec35da025 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 9.0E-26 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16000 741ed33f01b89050ca52fe7ec35da025 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 93 104 9.0E-26 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16000 741ed33f01b89050ca52fe7ec35da025 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 9.0E-26 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16000 741ed33f01b89050ca52fe7ec35da025 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 9.0E-26 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS16000 741ed33f01b89050ca52fe7ec35da025 289 PANTHER PTHR24317 1 289 1.0E-129 T 26-04-2016 RGE_RS16000 741ed33f01b89050ca52fe7ec35da025 289 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 27 257 5.5E-52 T 26-04-2016 RGE_RS16000 741ed33f01b89050ca52fe7ec35da025 289 Gene3D G3DSA:3.40.50.720 6 258 3.9E-70 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS16000 741ed33f01b89050ca52fe7ec35da025 289 PANTHER PTHR24317:SF5 1 289 1.0E-129 T 26-04-2016 RGE_RS16000 741ed33f01b89050ca52fe7ec35da025 289 SUPERFAMILY SSF51735 18 258 6.43E-66 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11550 f377370678862991e5309ccf4a20b862 181 ProSitePatterns PS00893 Nudix box signature. 76 97 - T 26-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RGE_RS11550 f377370678862991e5309ccf4a20b862 181 Pfam PF00293 NUDIX domain 54 150 1.2E-13 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS11550 f377370678862991e5309ccf4a20b862 181 PANTHER PTHR22769:SF17 1 181 4.8E-57 T 26-04-2016 RGE_RS11550 f377370678862991e5309ccf4a20b862 181 PANTHER PTHR22769 1 181 4.8E-57 T 26-04-2016 RGE_RS11550 f377370678862991e5309ccf4a20b862 181 Gene3D G3DSA:3.90.79.10 43 176 2.5E-29 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS11550 f377370678862991e5309ccf4a20b862 181 Pfam PF14803 Nudix N-terminal 8 41 2.5E-12 T 26-04-2016 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.-+3.6.1.13|KEGG: 00332+3.6.1.-|KEGG: 00740+3.6.1.18|KEGG: 00790+3.6.1.- RGE_RS11550 f377370678862991e5309ccf4a20b862 181 SUPERFAMILY SSF55811 8 168 4.06E-35 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS11550 f377370678862991e5309ccf4a20b862 181 Gene3D G3DSA:2.20.70.10 6 41 5.3E-14 T 26-04-2016 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 Pfam PF00512 His Kinase A (phospho-acceptor) domain 160 225 7.9E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 SMART SM00388 159 225 2.2E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 SUPERFAMILY SSF52172 11 159 1.7E-5 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 SUPERFAMILY SSF55874 214 383 4.58E-44 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 SUPERFAMILY SSF52172 406 527 1.39E-34 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 Gene3D G3DSA:3.40.50.2300 404 525 3.2E-34 T 26-04-2016 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 Pfam PF00072 Response regulator receiver domain 410 519 4.7E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 Gene3D G3DSA:3.30.565.10 213 386 7.7E-45 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 Gene3D G3DSA:1.10.287.130 152 212 1.3E-9 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 337 2.2E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 382 2.2E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 309 323 2.2E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 344 362 2.2E-17 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 272 383 1.2E-25 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 SUPERFAMILY SSF47384 148 226 2.35E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 SMART SM00448 408 522 6.7E-33 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 PANTHER PTHR24423 9 24 1.1E-102 T 26-04-2016 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 PANTHER PTHR24423 138 524 1.1E-102 T 26-04-2016 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 Gene3D G3DSA:3.40.50.2300 12 135 2.7E-6 T 26-04-2016 RGE_RS11345 1a0028746b5a95ac589031d26f27b39f 530 SMART SM00387 272 385 1.9E-38 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09380 26c3321a35f66aed5006158ae46f85de 343 SUPERFAMILY SSF143631 41 330 1.96E-68 T 26-04-2016 IPR003374 ApbE-like domain RGE_RS09380 26c3321a35f66aed5006158ae46f85de 343 Pfam PF02424 ApbE family 45 323 3.8E-60 T 26-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 RGE_RS09380 26c3321a35f66aed5006158ae46f85de 343 PANTHER PTHR30040 4 343 2.9E-59 T 26-04-2016 RGE_RS09380 26c3321a35f66aed5006158ae46f85de 343 PIRSF PIRSF006268 12 339 7.9E-58 T 26-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 RGE_RS03140 3a963a867d5ab98869aa1aa7e87ad390 143 Pfam PF02627 Carboxymuconolactone decarboxylase family 41 126 6.5E-22 T 26-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RGE_RS03140 3a963a867d5ab98869aa1aa7e87ad390 143 PANTHER PTHR33570:SF4 13 136 1.4E-40 T 26-04-2016 RGE_RS03140 3a963a867d5ab98869aa1aa7e87ad390 143 Gene3D G3DSA:1.20.1290.10 12 134 1.6E-46 T 26-04-2016 IPR029032 AhpD-like RGE_RS03140 3a963a867d5ab98869aa1aa7e87ad390 143 SUPERFAMILY SSF69118 12 133 1.47E-37 T 26-04-2016 IPR029032 AhpD-like RGE_RS03140 3a963a867d5ab98869aa1aa7e87ad390 143 PANTHER PTHR33570 13 136 1.4E-40 T 26-04-2016 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 PIRSF PIRSF002401 1 348 6.0E-136 T 26-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 Gene3D G3DSA:2.70.210.12 2 156 1.4E-57 T 26-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 Hamap MF_01454 GTPase Obg [obg]. 2 334 48.386 T 26-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 Pfam PF01018 GTP1/OBG 3 158 1.7E-58 T 26-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 26-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 2.4E-36 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 2.4E-36 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 2.4E-36 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 2.4E-36 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 PANTHER PTHR11702 1 331 3.5E-164 T 26-04-2016 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 Pfam PF01926 50S ribosome-binding GTPase 161 285 1.4E-25 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 PANTHER PTHR11702:SF3 1 331 3.5E-164 T 26-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 333 6.3E-144 T 26-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 SUPERFAMILY SSF52540 151 342 1.39E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 SUPERFAMILY SSF82051 2 158 2.35E-55 T 26-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RGE_RS20735 4aaa06079fc69b26c9f5f4b38a260c07 353 Gene3D G3DSA:3.40.50.300 160 337 2.5E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16655 ae0a0057fbab0a6de45cbcb5cdcf935f 56 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 6 54 14.862 T 26-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS16655 ae0a0057fbab0a6de45cbcb5cdcf935f 56 Pfam PF00471 Ribosomal protein L33 8 54 5.3E-18 T 26-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS16655 ae0a0057fbab0a6de45cbcb5cdcf935f 56 SUPERFAMILY SSF57829 3 54 4.03E-19 T 26-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 RGE_RS16655 ae0a0057fbab0a6de45cbcb5cdcf935f 56 ProSitePatterns PS00582 Ribosomal protein L33 signature. 22 41 - T 26-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS16655 ae0a0057fbab0a6de45cbcb5cdcf935f 56 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 56 2.8E-26 T 26-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS16655 ae0a0057fbab0a6de45cbcb5cdcf935f 56 PANTHER PTHR15238 1 56 3.1E-23 T 26-04-2016 RGE_RS19230 be1c620c5c838cb525364bf451143629 470 Gene3D G3DSA:1.10.287.950 230 434 4.4E-62 T 26-04-2016 RGE_RS19230 be1c620c5c838cb525364bf451143629 470 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 342 371 9.8E-54 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19230 be1c620c5c838cb525364bf451143629 470 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 236 265 9.8E-54 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19230 be1c620c5c838cb525364bf451143629 470 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 313 340 9.8E-54 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19230 be1c620c5c838cb525364bf451143629 470 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 390 419 9.8E-54 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19230 be1c620c5c838cb525364bf451143629 470 SMART SM00283 215 462 8.5E-97 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS19230 be1c620c5c838cb525364bf451143629 470 PANTHER PTHR32089:SF63 201 465 1.6E-140 T 26-04-2016 RGE_RS19230 be1c620c5c838cb525364bf451143629 470 PANTHER PTHR32089:SF63 1 10 1.6E-140 T 26-04-2016 RGE_RS19230 be1c620c5c838cb525364bf451143629 470 PANTHER PTHR32089 1 10 1.6E-140 T 26-04-2016 RGE_RS19230 be1c620c5c838cb525364bf451143629 470 PANTHER PTHR32089 201 465 1.6E-140 T 26-04-2016 RGE_RS19230 be1c620c5c838cb525364bf451143629 470 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 267 461 2.4E-62 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS19230 be1c620c5c838cb525364bf451143629 470 SUPERFAMILY SSF58104 235 463 3.01E-67 T 26-04-2016 RGE_RS02600 c50fb22e3057c0eca475720bac4f7d92 356 Gene3D G3DSA:2.40.160.10 14 356 3.8E-53 T 26-04-2016 IPR023614 Porin domain RGE_RS02600 c50fb22e3057c0eca475720bac4f7d92 356 Pfam PF13609 Gram-negative porin 3 318 4.8E-36 T 26-04-2016 RGE_RS02600 c50fb22e3057c0eca475720bac4f7d92 356 SUPERFAMILY SSF56935 14 356 8.85E-44 T 26-04-2016 RGE_RS07145 7f3d05c8a86decb51b401ef44eb00cdc 834 PANTHER PTHR30489 227 833 1.5E-53 T 26-04-2016 RGE_RS07145 7f3d05c8a86decb51b401ef44eb00cdc 834 PANTHER PTHR30489 1 194 1.5E-53 T 26-04-2016 RGE_RS07145 7f3d05c8a86decb51b401ef44eb00cdc 834 Pfam PF02687 FtsX-like permease family 709 820 4.5E-9 T 26-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RGE_RS07145 7f3d05c8a86decb51b401ef44eb00cdc 834 Pfam PF02687 FtsX-like permease family 255 378 4.0E-11 T 26-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RGE_RS07145 7f3d05c8a86decb51b401ef44eb00cdc 834 PANTHER PTHR30489:SF6 227 833 1.5E-53 T 26-04-2016 RGE_RS07145 7f3d05c8a86decb51b401ef44eb00cdc 834 PANTHER PTHR30489:SF6 1 194 1.5E-53 T 26-04-2016 RGE_RS07300 936ec32aaa1251e6771b60a12a781dfc 155 Pfam PF13404 AsnC-type helix-turn-helix domain 4 45 9.1E-17 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS07300 936ec32aaa1251e6771b60a12a781dfc 155 PANTHER PTHR30154:SF28 1 154 2.5E-53 T 26-04-2016 RGE_RS07300 936ec32aaa1251e6771b60a12a781dfc 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 8.3E-13 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS07300 936ec32aaa1251e6771b60a12a781dfc 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 8.3E-13 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS07300 936ec32aaa1251e6771b60a12a781dfc 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 8.3E-13 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS07300 936ec32aaa1251e6771b60a12a781dfc 155 Gene3D G3DSA:1.10.10.10 5 56 9.4E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07300 936ec32aaa1251e6771b60a12a781dfc 155 Gene3D G3DSA:3.30.70.920 57 152 4.4E-30 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS07300 936ec32aaa1251e6771b60a12a781dfc 155 SUPERFAMILY SSF46785 3 63 1.44E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07300 936ec32aaa1251e6771b60a12a781dfc 155 SUPERFAMILY SSF54909 65 152 6.57E-23 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS07300 936ec32aaa1251e6771b60a12a781dfc 155 PANTHER PTHR30154 1 154 2.5E-53 T 26-04-2016 RGE_RS07300 936ec32aaa1251e6771b60a12a781dfc 155 SMART SM00344 4 113 6.5E-42 T 26-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RGE_RS07300 936ec32aaa1251e6771b60a12a781dfc 155 Pfam PF01037 Lrp/AsnC ligand binding domain 79 144 8.6E-24 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS01325 0843b3020af664171a30da65e5e58cae 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.6E-16 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS01325 0843b3020af664171a30da65e5e58cae 295 PANTHER PTHR30293 1 295 7.5E-59 T 26-04-2016 RGE_RS01325 0843b3020af664171a30da65e5e58cae 295 PANTHER PTHR30293:SF2 1 295 7.5E-59 T 26-04-2016 RGE_RS01325 0843b3020af664171a30da65e5e58cae 295 SUPERFAMILY SSF53850 92 289 2.35E-21 T 26-04-2016 RGE_RS01325 0843b3020af664171a30da65e5e58cae 295 Gene3D G3DSA:3.40.190.10 199 257 1.9E-5 T 26-04-2016 RGE_RS01325 0843b3020af664171a30da65e5e58cae 295 Gene3D G3DSA:1.10.10.10 1 81 7.5E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01325 0843b3020af664171a30da65e5e58cae 295 Gene3D G3DSA:3.40.190.10 82 198 5.9E-6 T 26-04-2016 RGE_RS01325 0843b3020af664171a30da65e5e58cae 295 SUPERFAMILY SSF46785 1 85 1.14E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01325 0843b3020af664171a30da65e5e58cae 295 Pfam PF03466 LysR substrate binding domain 92 290 8.5E-13 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS22040 c4a2b120cd06af8482132fdee69b25c8 317 Gene3D G3DSA:3.40.50.300 141 314 3.2E-62 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22040 c4a2b120cd06af8482132fdee69b25c8 317 SUPERFAMILY SSF75138 11 138 1.44E-28 T 26-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like RGE_RS22040 c4a2b120cd06af8482132fdee69b25c8 317 PANTHER PTHR30305:SF1 1 317 6.9E-94 T 26-04-2016 RGE_RS22040 c4a2b120cd06af8482132fdee69b25c8 317 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 5 315 36.004 T 26-04-2016 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 RGE_RS22040 c4a2b120cd06af8482132fdee69b25c8 317 Pfam PF02603 HPr Serine kinase N terminus 8 135 2.7E-23 T 26-04-2016 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 RGE_RS22040 c4a2b120cd06af8482132fdee69b25c8 317 SUPERFAMILY SSF53795 140 308 1.71E-34 T 26-04-2016 RGE_RS22040 c4a2b120cd06af8482132fdee69b25c8 317 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 10 311 9.5E-98 T 26-04-2016 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 RGE_RS22040 c4a2b120cd06af8482132fdee69b25c8 317 PANTHER PTHR30305 1 317 6.9E-94 T 26-04-2016 RGE_RS22040 c4a2b120cd06af8482132fdee69b25c8 317 Pfam PF07475 HPr Serine kinase C-terminal domain 139 307 3.1E-62 T 26-04-2016 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 RGE_RS22040 c4a2b120cd06af8482132fdee69b25c8 317 Gene3D G3DSA:3.40.1390.20 11 137 5.8E-35 T 26-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like RGE_RS06485 aae85e00b17270a4dc5f21c6b72a8097 419 PIRSF PIRSF038800 1 410 1.6E-132 T 26-04-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 RGE_RS06485 aae85e00b17270a4dc5f21c6b72a8097 419 Gene3D G3DSA:3.40.640.10 40 264 3.7E-22 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS06485 aae85e00b17270a4dc5f21c6b72a8097 419 TIGRFAM TIGR01814 kynureninase: kynureninase 7 403 1.2E-81 T 26-04-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 RGE_RS06485 aae85e00b17270a4dc5f21c6b72a8097 419 Pfam PF00266 Aminotransferase class-V 113 323 1.6E-13 T 26-04-2016 IPR000192 Aminotransferase class V domain RGE_RS06485 aae85e00b17270a4dc5f21c6b72a8097 419 PANTHER PTHR14084 1 412 4.5E-126 T 26-04-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 RGE_RS06485 aae85e00b17270a4dc5f21c6b72a8097 419 Hamap MF_01970 Kynureninase [kynU]. 2 402 33.141 T 26-04-2016 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|UniPathway: UPA00253|UniPathway: UPA00334 RGE_RS06485 aae85e00b17270a4dc5f21c6b72a8097 419 SUPERFAMILY SSF53383 2 404 6.77E-83 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS06485 aae85e00b17270a4dc5f21c6b72a8097 419 Gene3D G3DSA:3.90.1150.10 265 419 2.2E-49 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS18425 c922c7a2bd80356e84e48e225ff854c8 224 PANTHER PTHR24567 1 223 9.8E-70 T 26-04-2016 RGE_RS18425 c922c7a2bd80356e84e48e225ff854c8 224 PANTHER PTHR24567:SF22 1 223 9.8E-70 T 26-04-2016 RGE_RS18425 c922c7a2bd80356e84e48e225ff854c8 224 Pfam PF13545 Crp-like helix-turn-helix domain 135 200 2.5E-14 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS18425 c922c7a2bd80356e84e48e225ff854c8 224 SUPERFAMILY SSF51206 1 122 1.66E-10 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS18425 c922c7a2bd80356e84e48e225ff854c8 224 SMART SM00419 147 195 4.1E-4 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS18425 c922c7a2bd80356e84e48e225ff854c8 224 Gene3D G3DSA:1.10.10.10 137 202 1.2E-11 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18425 c922c7a2bd80356e84e48e225ff854c8 224 SUPERFAMILY SSF46785 132 206 1.15E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18425 c922c7a2bd80356e84e48e225ff854c8 224 Gene3D G3DSA:2.60.120.10 2 121 8.3E-9 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 SUPERFAMILY SSF52425 7 188 2.35E-48 T 26-04-2016 IPR006050 DNA photolyase, N-terminal RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 Gene3D G3DSA:1.25.40.80 155 170 2.4E-33 T 26-04-2016 RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 Gene3D G3DSA:1.25.40.80 214 290 2.4E-33 T 26-04-2016 RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 Gene3D G3DSA:1.10.579.10 291 487 1.9E-78 T 26-04-2016 RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 354 373 - T 26-04-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 PANTHER PTHR11455 3 487 1.8E-179 T 26-04-2016 RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 PANTHER PTHR11455:SF18 3 487 1.8E-179 T 26-04-2016 RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 SUPERFAMILY SSF48173 206 487 3.79E-107 T 26-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 Pfam PF00875 DNA photolyase 8 171 2.6E-42 T 26-04-2016 IPR006050 DNA photolyase, N-terminal RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 PRINTS PR00147 DNA photolyase signature 151 167 1.6E-28 T 26-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 PRINTS PR00147 DNA photolyase signature 354 372 1.6E-28 T 26-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 PRINTS PR00147 DNA photolyase signature 334 350 1.6E-28 T 26-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 PRINTS PR00147 DNA photolyase signature 393 407 1.6E-28 T 26-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 Pfam PF03441 FAD binding domain of DNA photolyase 282 484 4.2E-83 T 26-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain RGE_RS20490 26dfb3c7e03ec44aa8abb0ee319217ec 501 Gene3D G3DSA:3.40.50.620 6 154 1.9E-44 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS01655 af332dd90198ba570f423c493d034c28 93 Gene3D G3DSA:2.40.50.140 13 90 2.8E-31 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS01655 af332dd90198ba570f423c493d034c28 93 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 14 83 4.5E-33 T 26-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01655 af332dd90198ba570f423c493d034c28 93 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 14 83 3.0E-27 T 26-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01655 af332dd90198ba570f423c493d034c28 93 PANTHER PTHR10744:SF1 5 90 5.4E-30 T 26-04-2016 RGE_RS01655 af332dd90198ba570f423c493d034c28 93 Pfam PF00366 Ribosomal protein S17 18 84 1.5E-29 T 26-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01655 af332dd90198ba570f423c493d034c28 93 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 11 89 23.878 T 26-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01655 af332dd90198ba570f423c493d034c28 93 ProSitePatterns PS00056 Ribosomal protein S17 signature. 64 76 - T 26-04-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01655 af332dd90198ba570f423c493d034c28 93 PANTHER PTHR10744 5 90 5.4E-30 T 26-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01655 af332dd90198ba570f423c493d034c28 93 PRINTS PR00973 Ribosomal protein S17 family signature 32 55 3.5E-11 T 26-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01655 af332dd90198ba570f423c493d034c28 93 PRINTS PR00973 Ribosomal protein S17 family signature 74 81 3.5E-11 T 26-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01655 af332dd90198ba570f423c493d034c28 93 PRINTS PR00973 Ribosomal protein S17 family signature 64 74 3.5E-11 T 26-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01655 af332dd90198ba570f423c493d034c28 93 SUPERFAMILY SSF50249 13 91 2.7E-29 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS12810 4ea5dbf0d961a56860560a73dcc297c6 299 Pfam PF00892 EamA-like transporter family 157 294 3.3E-15 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS12810 4ea5dbf0d961a56860560a73dcc297c6 299 Pfam PF00892 EamA-like transporter family 14 142 5.2E-13 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS12810 4ea5dbf0d961a56860560a73dcc297c6 299 PANTHER PTHR12715:SF11 8 299 1.6E-60 T 26-04-2016 RGE_RS12810 4ea5dbf0d961a56860560a73dcc297c6 299 SUPERFAMILY SSF103481 195 297 1.7E-12 T 26-04-2016 RGE_RS12810 4ea5dbf0d961a56860560a73dcc297c6 299 PANTHER PTHR12715 8 299 1.6E-60 T 26-04-2016 RGE_RS12810 4ea5dbf0d961a56860560a73dcc297c6 299 SUPERFAMILY SSF103481 43 145 3.27E-12 T 26-04-2016 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 Pfam PF00391 PEP-utilising enzyme, mobile domain 392 463 1.2E-25 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 702 720 - T 26-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 PANTHER PTHR22931 7 272 0.0 T 26-04-2016 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 PANTHER PTHR22931 291 797 0.0 T 26-04-2016 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 SUPERFAMILY SSF56059 280 393 2.59E-107 T 26-04-2016 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 SUPERFAMILY SSF56059 8 252 2.59E-107 T 26-04-2016 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 PANTHER PTHR22931:SF7 7 272 0.0 T 26-04-2016 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 PANTHER PTHR22931:SF7 291 797 0.0 T 26-04-2016 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 353 8.3E-112 T 26-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 PIRSF PIRSF000854 5 798 0.0 T 26-04-2016 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 SUPERFAMILY SSF51621 473 797 1.78E-91 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 11 797 0.0 T 26-04-2016 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 490 797 2.7E-58 T 26-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 SUPERFAMILY SSF52009 355 474 1.96E-34 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 422 433 - T 26-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 Gene3D G3DSA:3.30.470.20 201 365 8.9E-54 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 Gene3D G3DSA:3.30.1490.20 9 198 1.4E-65 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 Gene3D G3DSA:3.50.30.10 381 482 3.3E-36 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS13230 90a307aabe08ef760c5cf74be8e8393d 798 Gene3D G3DSA:3.20.20.60 489 797 1.9E-98 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS10145 e4a120046aef56da051d992251f0705a 293 Pfam PF13847 Methyltransferase domain 75 203 1.0E-30 T 26-04-2016 IPR025714 Methyltransferase domain RGE_RS10145 e4a120046aef56da051d992251f0705a 293 Gene3D G3DSA:3.40.50.150 72 270 4.8E-42 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS10145 e4a120046aef56da051d992251f0705a 293 PANTHER PTHR10108 74 278 2.2E-46 T 26-04-2016 RGE_RS10145 e4a120046aef56da051d992251f0705a 293 SUPERFAMILY SSF53335 62 228 1.84E-39 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS10145 e4a120046aef56da051d992251f0705a 293 PANTHER PTHR10108:SF911 74 278 2.2E-46 T 26-04-2016 RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 Gene3D G3DSA:3.40.50.10070 35 155 1.2E-37 T 26-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 Hamap MF_00671 Protein TolB [tolB]. 17 429 32.696 T 26-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 Pfam PF07676 WD40-like Beta Propeller Repeat 377 401 6.7E-4 T 26-04-2016 IPR011659 WD40-like Beta Propeller RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 Pfam PF07676 WD40-like Beta Propeller Repeat 200 231 1.8E-5 T 26-04-2016 IPR011659 WD40-like Beta Propeller RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 Pfam PF07676 WD40-like Beta Propeller Repeat 328 356 2.7E-8 T 26-04-2016 IPR011659 WD40-like Beta Propeller RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 Pfam PF07676 WD40-like Beta Propeller Repeat 284 319 1.9E-13 T 26-04-2016 IPR011659 WD40-like Beta Propeller RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 Pfam PF07676 WD40-like Beta Propeller Repeat 243 274 7.3E-5 T 26-04-2016 IPR011659 WD40-like Beta Propeller RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 Gene3D G3DSA:2.130.10.10 156 431 3.4E-78 T 26-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 SUPERFAMILY SSF52964 44 167 1.31E-32 T 26-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 SUPERFAMILY SSF69304 161 431 2.62E-54 T 26-04-2016 RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 Pfam PF04052 TolB amino-terminal domain 37 135 7.9E-25 T 26-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 30 430 6.0E-143 T 26-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 PANTHER PTHR11731:SF123 166 431 7.6E-72 T 26-04-2016 RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 PANTHER PTHR11731:SF123 1 129 7.6E-72 T 26-04-2016 RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 PANTHER PTHR11731 1 129 7.6E-72 T 26-04-2016 RGE_RS05445 747d8427a2995847c3d8e66da5f0e287 434 PANTHER PTHR11731 166 431 7.6E-72 T 26-04-2016 RGE_RS07670 b6e84550d033ecd7123d52a0a7da488f 417 PANTHER PTHR11993:SF10 3 164 7.3E-240 T 26-04-2016 RGE_RS07670 b6e84550d033ecd7123d52a0a7da488f 417 PANTHER PTHR11993:SF10 190 412 7.3E-240 T 26-04-2016 RGE_RS07670 b6e84550d033ecd7123d52a0a7da488f 417 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 417 50.238 T 26-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RGE_RS07670 b6e84550d033ecd7123d52a0a7da488f 417 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 6 417 4.7E-185 T 26-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RGE_RS07670 b6e84550d033ecd7123d52a0a7da488f 417 SUPERFAMILY SSF56762 16 417 7.46E-137 T 26-04-2016 IPR029014 NiFe hydrogenase-like RGE_RS07670 b6e84550d033ecd7123d52a0a7da488f 417 Gene3D G3DSA:1.10.645.10 6 408 1.3E-65 T 26-04-2016 IPR029014 NiFe hydrogenase-like RGE_RS07670 b6e84550d033ecd7123d52a0a7da488f 417 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 43 54 - T 26-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 RGE_RS07670 b6e84550d033ecd7123d52a0a7da488f 417 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 120 417 2.2E-123 T 26-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 RGE_RS07670 b6e84550d033ecd7123d52a0a7da488f 417 PANTHER PTHR11993 3 164 7.3E-240 T 26-04-2016 RGE_RS07670 b6e84550d033ecd7123d52a0a7da488f 417 PANTHER PTHR11993 190 412 7.3E-240 T 26-04-2016 RGE_RS20280 4c9d9cfd6196403329ae16cee2aa9481 264 SUPERFAMILY SSF52096 17 263 3.08E-88 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS20280 4c9d9cfd6196403329ae16cee2aa9481 264 PANTHER PTHR11941 21 261 5.4E-113 T 26-04-2016 RGE_RS20280 4c9d9cfd6196403329ae16cee2aa9481 264 PANTHER PTHR11941:SF54 21 261 5.4E-113 T 26-04-2016 RGE_RS20280 4c9d9cfd6196403329ae16cee2aa9481 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 21 264 4.4E-81 T 26-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RGE_RS20280 4c9d9cfd6196403329ae16cee2aa9481 264 Gene3D G3DSA:3.90.226.10 17 262 1.1E-97 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS20280 4c9d9cfd6196403329ae16cee2aa9481 264 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 105 125 - T 26-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RGE_RS22550 2f8088f9dd3ab1cc4f657a9c0bffe57d 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 274 6.6E-27 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS22550 2f8088f9dd3ab1cc4f657a9c0bffe57d 278 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 9 269 9.6E-93 T 26-04-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 RGE_RS22550 2f8088f9dd3ab1cc4f657a9c0bffe57d 278 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 13 273 1.5E-120 T 26-04-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 RGE_RS22550 2f8088f9dd3ab1cc4f657a9c0bffe57d 278 Gene3D G3DSA:1.10.3720.10 22 275 4.2E-50 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS22550 2f8088f9dd3ab1cc4f657a9c0bffe57d 278 PANTHER PTHR30406:SF6 8 278 3.5E-152 T 26-04-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 RGE_RS22550 2f8088f9dd3ab1cc4f657a9c0bffe57d 278 PANTHER PTHR30406 8 278 3.5E-152 T 26-04-2016 RGE_RS22550 2f8088f9dd3ab1cc4f657a9c0bffe57d 278 SUPERFAMILY SSF161098 19 266 4.3E-55 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS19750 fbf1344f2909872df28ef777d932b364 222 SUPERFAMILY SSF56784 1 214 6.24E-35 T 26-04-2016 IPR023214 HAD-like domain RGE_RS19750 fbf1344f2909872df28ef777d932b364 222 PANTHER PTHR10000 1 214 1.7E-34 T 26-04-2016 RGE_RS19750 fbf1344f2909872df28ef777d932b364 222 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 193 1.4E-23 T 26-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 RGE_RS19750 fbf1344f2909872df28ef777d932b364 222 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 204 1.6E-40 T 26-04-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial RGE_RS19750 fbf1344f2909872df28ef777d932b364 222 Gene3D G3DSA:3.40.50.1000 81 219 2.1E-42 T 26-04-2016 IPR023214 HAD-like domain RGE_RS19750 fbf1344f2909872df28ef777d932b364 222 Gene3D G3DSA:1.20.1440.100 15 80 1.5E-17 T 26-04-2016 RGE_RS19750 fbf1344f2909872df28ef777d932b364 222 PANTHER PTHR10000:SF10 1 214 1.7E-34 T 26-04-2016 RGE_RS19750 fbf1344f2909872df28ef777d932b364 222 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 191 4.3E-38 T 26-04-2016 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 Gene3D G3DSA:3.30.420.40 315 357 1.2E-31 T 26-04-2016 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 Gene3D G3DSA:3.30.420.40 205 237 1.2E-31 T 26-04-2016 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 PANTHER PTHR19375:SF176 19 577 1.6E-246 T 26-04-2016 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 631 40.522 T 26-04-2016 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 Gene3D G3DSA:3.30.420.40 112 204 6.6E-52 T 26-04-2016 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 Gene3D G3DSA:3.30.420.40 6 46 6.6E-52 T 26-04-2016 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 PANTHER PTHR19375 19 577 1.6E-246 T 26-04-2016 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 26-04-2016 IPR018181 Heat shock protein 70, conserved site RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 629 4.9E-245 T 26-04-2016 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 Gene3D G3DSA:1.20.1270.10 528 630 2.2E-21 T 26-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 SUPERFAMILY SSF53067 19 195 4.21E-51 T 26-04-2016 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 Gene3D G3DSA:3.30.30.30 56 96 3.4E-8 T 26-04-2016 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 333 347 - T 26-04-2016 IPR018181 Heat shock protein 70, conserved site RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 Gene3D G3DSA:3.90.640.10 238 311 3.3E-8 T 26-04-2016 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 SUPERFAMILY SSF53067 199 377 3.46E-53 T 26-04-2016 RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 204 217 - T 26-04-2016 IPR018181 Heat shock protein 70, conserved site RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 PRINTS PR00301 70kDa heat shock protein signature 210 220 5.6E-58 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 PRINTS PR00301 70kDa heat shock protein signature 386 405 5.6E-58 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 PRINTS PR00301 70kDa heat shock protein signature 20 33 5.6E-58 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 PRINTS PR00301 70kDa heat shock protein signature 330 346 5.6E-58 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 PRINTS PR00301 70kDa heat shock protein signature 48 60 5.6E-58 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 PRINTS PR00301 70kDa heat shock protein signature 151 171 5.6E-58 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 PRINTS PR00301 70kDa heat shock protein signature 467 483 5.6E-58 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 PRINTS PR00301 70kDa heat shock protein signature 361 381 5.6E-58 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 Gene3D G3DSA:2.60.34.10 388 527 8.6E-48 T 26-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 Pfam PF00012 Hsp70 protein 21 596 1.7E-177 T 26-04-2016 IPR013126 Heat shock protein 70 family RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 SUPERFAMILY SSF100934 505 629 9.42E-20 T 26-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RGE_RS21000 6db097a5b485cea2ef05a5101da58da2 633 SUPERFAMILY SSF100920 384 534 2.22E-45 T 26-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RGE_RS13525 935485373c4a7ec11a7fdde22941e8bb 249 PANTHER PTHR21294 1 249 3.2E-155 T 26-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 RGE_RS13525 935485373c4a7ec11a7fdde22941e8bb 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 26-04-2016 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 RGE_RS13525 935485373c4a7ec11a7fdde22941e8bb 249 Pfam PF01012 Electron transfer flavoprotein domain 28 206 2.3E-43 T 26-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RGE_RS13525 935485373c4a7ec11a7fdde22941e8bb 249 PIRSF PIRSF000090 1 249 1.3E-83 T 26-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 RGE_RS13525 935485373c4a7ec11a7fdde22941e8bb 249 SUPERFAMILY SSF52402 1 242 7.67E-86 T 26-04-2016 RGE_RS13525 935485373c4a7ec11a7fdde22941e8bb 249 SMART SM00893 23 211 1.8E-65 T 26-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RGE_RS13525 935485373c4a7ec11a7fdde22941e8bb 249 Gene3D G3DSA:3.40.50.620 1 247 1.6E-103 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS13525 935485373c4a7ec11a7fdde22941e8bb 249 PANTHER PTHR21294:SF8 1 249 3.2E-155 T 26-04-2016 RGE_RS13205 473faf4cd88f411029036df7ffa51a08 150 Gene3D G3DSA:3.40.5.10 1 52 2.1E-24 T 26-04-2016 IPR020070 Ribosomal protein L9, N-terminal RGE_RS13205 473faf4cd88f411029036df7ffa51a08 150 Gene3D G3DSA:3.10.430.100 61 148 5.2E-27 T 26-04-2016 IPR020069 Ribosomal protein L9, C-terminal RGE_RS13205 473faf4cd88f411029036df7ffa51a08 150 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 5.3E-25 T 26-04-2016 IPR020069 Ribosomal protein L9, C-terminal RGE_RS13205 473faf4cd88f411029036df7ffa51a08 150 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 4.2E-44 T 26-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13205 473faf4cd88f411029036df7ffa51a08 150 PANTHER PTHR21368 1 150 7.9E-45 T 26-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13205 473faf4cd88f411029036df7ffa51a08 150 SUPERFAMILY SSF55653 60 147 2.62E-25 T 26-04-2016 IPR020069 Ribosomal protein L9, C-terminal RGE_RS13205 473faf4cd88f411029036df7ffa51a08 150 SUPERFAMILY SSF55658 1 56 1.01E-17 T 26-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RGE_RS13205 473faf4cd88f411029036df7ffa51a08 150 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 2.9E-22 T 26-04-2016 IPR020070 Ribosomal protein L9, N-terminal RGE_RS13205 473faf4cd88f411029036df7ffa51a08 150 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.345 T 26-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13205 473faf4cd88f411029036df7ffa51a08 150 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 26-04-2016 IPR020070 Ribosomal protein L9, N-terminal RGE_RS22045 ca120a60b6b17c0ef449f2737d587326 143 Pfam PF01475 Ferric uptake regulator family 10 129 6.5E-44 T 26-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RGE_RS22045 ca120a60b6b17c0ef449f2737d587326 143 PANTHER PTHR33202 4 140 2.2E-38 T 26-04-2016 RGE_RS22045 ca120a60b6b17c0ef449f2737d587326 143 SUPERFAMILY SSF46785 4 133 2.29E-39 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22045 ca120a60b6b17c0ef449f2737d587326 143 Gene3D G3DSA:1.10.10.10 3 82 1.5E-28 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 Pfam PF08447 PAS fold 31 110 3.6E-16 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 Gene3D G3DSA:1.10.287.950 282 486 3.5E-57 T 26-04-2016 RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 SMART SM00086 80 121 0.0022 T 26-04-2016 IPR001610 PAC motif RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 7.8E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 7.8E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 7.8E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 7.8E-48 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 SMART SM00091 8 74 1.6E-4 T 26-04-2016 IPR000014 PAS domain RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 PANTHER PTHR32089 43 517 1.7E-111 T 26-04-2016 RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 SUPERFAMILY SSF58104 242 515 8.76E-68 T 26-04-2016 RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 21 111 8.9E-16 T 26-04-2016 IPR000014 PAS domain RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 326 513 2.2E-58 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 SMART SM00283 267 514 1.3E-91 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 SUPERFAMILY SSF55785 21 114 1.74E-27 T 26-04-2016 IPR000014 PAS domain RGE_RS22520 90c62d785d135cbcbc851ed9378c42eb 521 Gene3D G3DSA:3.30.450.20 20 114 4.1E-26 T 26-04-2016 RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 5 280 1.3E-122 T 26-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 Gene3D G3DSA:3.40.50.970 332 476 7.3E-38 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 SUPERFAMILY SSF52518 241 379 1.34E-80 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 SUPERFAMILY SSF52518 3 197 1.34E-80 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 SUPERFAMILY SSF52518 315 502 1.03E-59 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 Gene3D G3DSA:3.40.50.920 493 616 1.7E-38 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 4 618 46.727 T 26-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 7 616 4.2E-269 T 26-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 Pfam PF02779 Transketolase, pyrimidine binding domain 317 476 7.2E-42 T 26-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 ProSitePatterns PS00801 Transketolase signature 1. 30 49 - T 26-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 Gene3D G3DSA:3.40.50.970 21 199 1.9E-80 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 Gene3D G3DSA:3.40.50.970 240 331 1.9E-80 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 PANTHER PTHR11624 18 216 5.5E-304 T 26-04-2016 IPR033247 Transketolase family RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 PANTHER PTHR11624 239 627 5.5E-304 T 26-04-2016 IPR033247 Transketolase family RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 Pfam PF02780 Transketolase, C-terminal domain 493 609 6.5E-31 T 26-04-2016 IPR033248 Transketolase, C-terminal domain RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 ProSitePatterns PS00802 Transketolase signature 2. 423 439 - T 26-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 SUPERFAMILY SSF52922 490 617 1.05E-34 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 SMART SM00861 317 481 6.8E-71 T 26-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 PANTHER PTHR11624:SF20 18 216 5.5E-304 T 26-04-2016 RGE_RS08200 0384f9cbfabebc23340acd1c39ac217d 628 PANTHER PTHR11624:SF20 239 627 5.5E-304 T 26-04-2016 RGE_RS14460 cbcce864a7290fc3e80c8a0c8afbaa7c 142 Pfam PF03795 YCII-related domain 3 115 5.0E-15 T 26-04-2016 IPR005545 YCII-related RGE_RS14460 cbcce864a7290fc3e80c8a0c8afbaa7c 142 PANTHER PTHR35174 3 142 4.2E-35 T 26-04-2016 RGE_RS14460 cbcce864a7290fc3e80c8a0c8afbaa7c 142 Gene3D G3DSA:3.30.70.1060 1 117 4.6E-34 T 26-04-2016 RGE_RS14460 cbcce864a7290fc3e80c8a0c8afbaa7c 142 SUPERFAMILY SSF54909 4 117 3.0E-26 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS14460 cbcce864a7290fc3e80c8a0c8afbaa7c 142 PANTHER PTHR35174:SF1 3 142 4.2E-35 T 26-04-2016 RGE_RS00305 8b4da476b80f0c060859fb13d3e4beb1 640 PANTHER PTHR30267 1 640 2.4E-270 T 26-04-2016 RGE_RS00305 8b4da476b80f0c060859fb13d3e4beb1 640 SUPERFAMILY SSF52540 75 344 1.04E-17 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00305 8b4da476b80f0c060859fb13d3e4beb1 640 SMART SM00763 19 376 9.9E-213 T 26-04-2016 IPR013153 PrkA AAA domain RGE_RS00305 8b4da476b80f0c060859fb13d3e4beb1 640 Pfam PF08298 PrkA AAA domain 19 376 9.2E-173 T 26-04-2016 IPR013153 PrkA AAA domain RGE_RS00305 8b4da476b80f0c060859fb13d3e4beb1 640 PIRSF PIRSF000549 1 640 2.1E-288 T 26-04-2016 IPR016230 Serine-protein kinase, PrkA GO:0004672 RGE_RS00305 8b4da476b80f0c060859fb13d3e4beb1 640 Pfam PF06798 PrkA serine protein kinase C-terminal domain 379 632 6.7E-73 T 26-04-2016 IPR010650 PrkA C-terminal domain RGE_RS00305 8b4da476b80f0c060859fb13d3e4beb1 640 Gene3D G3DSA:3.40.50.300 239 325 2.5E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00305 8b4da476b80f0c060859fb13d3e4beb1 640 Gene3D G3DSA:3.40.50.300 75 154 2.5E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00305 8b4da476b80f0c060859fb13d3e4beb1 640 PANTHER PTHR30267:SF2 1 640 2.4E-270 T 26-04-2016 RGE_RS23000 c85dc0564c6b85b445a3716a91838b5c 332 Pfam PF12833 Helix-turn-helix domain 252 329 8.7E-20 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS23000 c85dc0564c6b85b445a3716a91838b5c 332 PANTHER PTHR11019:SF52 208 332 1.3E-22 T 26-04-2016 RGE_RS23000 c85dc0564c6b85b445a3716a91838b5c 332 Gene3D G3DSA:1.10.10.60 281 329 1.8E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23000 c85dc0564c6b85b445a3716a91838b5c 332 SMART SM00342 246 328 1.5E-22 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS23000 c85dc0564c6b85b445a3716a91838b5c 332 SUPERFAMILY SSF46689 282 330 2.13E-12 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23000 c85dc0564c6b85b445a3716a91838b5c 332 Gene3D G3DSA:1.10.10.60 227 267 1.7E-4 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23000 c85dc0564c6b85b445a3716a91838b5c 332 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 28 201 3.5E-18 T 26-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RGE_RS23000 c85dc0564c6b85b445a3716a91838b5c 332 PANTHER PTHR11019 208 332 1.3E-22 T 26-04-2016 RGE_RS23000 c85dc0564c6b85b445a3716a91838b5c 332 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 312 328 6.3E-6 T 26-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RGE_RS23000 c85dc0564c6b85b445a3716a91838b5c 332 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 297 312 6.3E-6 T 26-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RGE_RS20630 ff9642233c3089cf2bab7764938151ab 195 PANTHER PTHR30417 9 183 6.1E-55 T 26-04-2016 RGE_RS20630 ff9642233c3089cf2bab7764938151ab 195 Gene3D G3DSA:3.40.80.10 9 181 6.1E-63 T 26-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RGE_RS20630 ff9642233c3089cf2bab7764938151ab 195 SUPERFAMILY SSF55846 8 182 1.96E-59 T 26-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RGE_RS20630 ff9642233c3089cf2bab7764938151ab 195 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 63 169 2.2E-17 T 26-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RGE_RS20630 ff9642233c3089cf2bab7764938151ab 195 SMART SM00644 21 169 7.1E-40 T 26-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RGE_RS20630 ff9642233c3089cf2bab7764938151ab 195 PANTHER PTHR30417:SF4 9 183 6.1E-55 T 26-04-2016 RGE_RS22135 d1a9a1b77325a27ce8bc665bc1e05b37 437 PANTHER PTHR10657 1 433 5.3E-73 T 26-04-2016 RGE_RS22135 d1a9a1b77325a27ce8bc665bc1e05b37 437 SUPERFAMILY SSF109998 34 209 1.02E-35 T 26-04-2016 IPR027304 Trigger factor/SurA domain RGE_RS22135 d1a9a1b77325a27ce8bc665bc1e05b37 437 SUPERFAMILY SSF54534 182 284 2.03E-20 T 26-04-2016 RGE_RS22135 d1a9a1b77325a27ce8bc665bc1e05b37 437 Pfam PF13616 PPIC-type PPIASE domain 176 283 6.2E-16 T 26-04-2016 RGE_RS22135 d1a9a1b77325a27ce8bc665bc1e05b37 437 Pfam PF13616 PPIC-type PPIASE domain 284 390 1.9E-24 T 26-04-2016 RGE_RS22135 d1a9a1b77325a27ce8bc665bc1e05b37 437 Hamap MF_01183 Chaperone SurA [surA]. 13 435 29.799 T 26-04-2016 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0042710|GO:0043165|GO:0050821|GO:0051082|GO:0051085|GO:0060274 RGE_RS22135 d1a9a1b77325a27ce8bc665bc1e05b37 437 PANTHER PTHR10657:SF16 1 433 5.3E-73 T 26-04-2016 RGE_RS22135 d1a9a1b77325a27ce8bc665bc1e05b37 437 Pfam PF09312 SurA N-terminal domain 34 150 1.4E-27 T 26-04-2016 IPR015391 SurA N-terminal RGE_RS22135 d1a9a1b77325a27ce8bc665bc1e05b37 437 Gene3D G3DSA:3.10.50.40 291 413 1.5E-38 T 26-04-2016 RGE_RS22135 d1a9a1b77325a27ce8bc665bc1e05b37 437 Gene3D G3DSA:3.10.50.40 180 287 3.0E-23 T 26-04-2016 RGE_RS22135 d1a9a1b77325a27ce8bc665bc1e05b37 437 SUPERFAMILY SSF54534 291 392 2.94E-31 T 26-04-2016 RGE_RS12915 481622babfe3ba121fa1587016d511e8 448 Gene3D G3DSA:2.120.10.30 64 97 8.0E-59 T 26-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RGE_RS12915 481622babfe3ba121fa1587016d511e8 448 Gene3D G3DSA:2.120.10.30 17 22 8.0E-59 T 26-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RGE_RS12915 481622babfe3ba121fa1587016d511e8 448 Gene3D G3DSA:2.120.10.30 129 446 8.0E-59 T 26-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RGE_RS12915 481622babfe3ba121fa1587016d511e8 448 SUPERFAMILY SSF50952 129 440 1.22E-38 T 26-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RGE_RS12915 481622babfe3ba121fa1587016d511e8 448 SUPERFAMILY SSF50952 65 97 1.22E-38 T 26-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RGE_RS12915 481622babfe3ba121fa1587016d511e8 448 Pfam PF07995 Glucose / Sorbosone dehydrogenase 174 352 5.1E-10 T 26-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 RGE_RS12915 481622babfe3ba121fa1587016d511e8 448 PANTHER PTHR19328:SF26 132 443 1.8E-143 T 26-04-2016 RGE_RS12915 481622babfe3ba121fa1587016d511e8 448 PANTHER PTHR19328:SF26 43 100 1.8E-143 T 26-04-2016 RGE_RS12915 481622babfe3ba121fa1587016d511e8 448 PANTHER PTHR19328 132 443 1.8E-143 T 26-04-2016 RGE_RS12915 481622babfe3ba121fa1587016d511e8 448 PANTHER PTHR19328 43 100 1.8E-143 T 26-04-2016 RGE_RS22780 a14c23765e5250d8c1499a0f60f1fbaa 495 Gene3D G3DSA:3.90.1300.10 7 492 3.5E-179 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22780 a14c23765e5250d8c1499a0f60f1fbaa 495 PANTHER PTHR11895:SF7 5 492 6.6E-211 T 26-04-2016 RGE_RS22780 a14c23765e5250d8c1499a0f60f1fbaa 495 ProSitePatterns PS00571 Amidases signature. 152 183 - T 26-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22780 a14c23765e5250d8c1499a0f60f1fbaa 495 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 13 486 92.954 T 26-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22780 a14c23765e5250d8c1499a0f60f1fbaa 495 Pfam PF01425 Amidase 26 475 5.5E-153 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22780 a14c23765e5250d8c1499a0f60f1fbaa 495 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 16 486 1.7E-170 T 26-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22780 a14c23765e5250d8c1499a0f60f1fbaa 495 SUPERFAMILY SSF75304 7 492 7.59E-159 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22780 a14c23765e5250d8c1499a0f60f1fbaa 495 PANTHER PTHR11895 5 492 6.6E-211 T 26-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS12330 5f3e7d2362e26116f34df2ab8c4c2bf8 325 Pfam PF09084 NMT1/THI5 like 41 245 2.0E-23 T 26-04-2016 IPR015168 SsuA/THI5-like RGE_RS12330 5f3e7d2362e26116f34df2ab8c4c2bf8 325 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 28 325 1.3E-140 T 26-04-2016 IPR010068 Periplasmic binding protein TauA GO:0015734|GO:0042597 RGE_RS12330 5f3e7d2362e26116f34df2ab8c4c2bf8 325 Gene3D G3DSA:3.40.190.10 33 98 2.4E-4 T 26-04-2016 RGE_RS12330 5f3e7d2362e26116f34df2ab8c4c2bf8 325 PANTHER PTHR30024 1 325 6.1E-79 T 26-04-2016 RGE_RS12330 5f3e7d2362e26116f34df2ab8c4c2bf8 325 PANTHER PTHR30024:SF17 1 325 6.1E-79 T 26-04-2016 RGE_RS12330 5f3e7d2362e26116f34df2ab8c4c2bf8 325 SMART SM00062 27 251 3.0E-10 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS12330 5f3e7d2362e26116f34df2ab8c4c2bf8 325 Gene3D G3DSA:3.40.190.10 110 230 6.0E-24 T 26-04-2016 RGE_RS12330 5f3e7d2362e26116f34df2ab8c4c2bf8 325 SUPERFAMILY SSF53850 26 248 2.13E-47 T 26-04-2016 RGE_RS02315 011933c097bd2fb859139c1dd892e847 373 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 1 354 38.087 T 26-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RGE_RS02315 011933c097bd2fb859139c1dd892e847 373 SUPERFAMILY SSF52440 2 91 4.03E-24 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS02315 011933c097bd2fb859139c1dd892e847 373 PANTHER PTHR11609 1 355 1.2E-124 T 26-04-2016 RGE_RS02315 011933c097bd2fb859139c1dd892e847 373 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 1 355 5.3E-109 T 26-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RGE_RS02315 011933c097bd2fb859139c1dd892e847 373 Pfam PF02222 ATP-grasp domain 102 270 2.6E-44 T 26-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 RGE_RS02315 011933c097bd2fb859139c1dd892e847 373 Gene3D G3DSA:3.30.470.20 171 366 6.4E-62 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS02315 011933c097bd2fb859139c1dd892e847 373 SUPERFAMILY SSF56059 93 289 9.3E-56 T 26-04-2016 RGE_RS02315 011933c097bd2fb859139c1dd892e847 373 Gene3D G3DSA:3.30.1490.20 109 168 1.3E-17 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS02315 011933c097bd2fb859139c1dd892e847 373 Gene3D G3DSA:3.40.50.20 1 101 6.7E-33 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS02315 011933c097bd2fb859139c1dd892e847 373 PANTHER PTHR11609:SF5 1 355 1.2E-124 T 26-04-2016 RGE_RS02315 011933c097bd2fb859139c1dd892e847 373 SUPERFAMILY SSF51246 294 361 1.8E-14 T 26-04-2016 IPR011054 Rudiment single hybrid motif RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 Gene3D G3DSA:1.10.420.10 311 410 6.8E-46 T 26-04-2016 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 Gene3D G3DSA:1.10.420.10 254 275 6.8E-46 T 26-04-2016 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 SUPERFAMILY SSF48113 18 432 2.95E-152 T 26-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 PANTHER PTHR30555:SF0 1 737 0.0 T 26-04-2016 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 12 738 0.0 T 26-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 Pfam PF00141 Peroxidase 68 399 3.8E-46 T 26-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 Pfam PF00141 Peroxidase 405 712 2.4E-40 T 26-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 PANTHER PTHR30555 1 737 0.0 T 26-04-2016 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 260 270 - T 26-04-2016 IPR019793 Peroxidases heam-ligand binding site RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 PRINTS PR00458 Haem peroxidase superfamily signature 319 334 2.0E-17 T 26-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 PRINTS PR00458 Haem peroxidase superfamily signature 148 165 2.0E-17 T 26-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 PRINTS PR00458 Haem peroxidase superfamily signature 260 275 2.0E-17 T 26-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 PRINTS PR00458 Haem peroxidase superfamily signature 88 102 2.0E-17 T 26-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 PRINTS PR00458 Haem peroxidase superfamily signature 166 178 2.0E-17 T 26-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 65 90 9.8E-55 T 26-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 24 46 9.8E-55 T 26-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 50 63 9.8E-55 T 26-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 268 291 9.8E-55 T 26-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 483 509 9.8E-55 T 26-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 Gene3D G3DSA:1.10.420.10 592 713 7.5E-43 T 26-04-2016 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 ProSitePatterns PS00436 Peroxidases active site signature. 88 99 - T 26-04-2016 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 SUPERFAMILY SSF48113 433 737 8.84E-112 T 26-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 Hamap MF_01961 Catalase-peroxidase [katG]. 2 738 42.2 T 26-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 Gene3D G3DSA:1.10.520.10 45 199 1.1E-74 T 26-04-2016 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 Gene3D G3DSA:1.10.520.10 716 738 1.5E-63 T 26-04-2016 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 Gene3D G3DSA:1.10.520.10 240 253 1.1E-74 T 26-04-2016 RGE_RS17210 1ee7741c1f8d67fabb4c67460f92c9f9 739 Gene3D G3DSA:1.10.520.10 435 591 1.5E-63 T 26-04-2016 RGE_RS01030 54a2ce23d95ab3e3bb5a3ceb9eea0d10 196 PANTHER PTHR30353 1 196 1.1E-60 T 26-04-2016 IPR032818 DedA family RGE_RS01030 54a2ce23d95ab3e3bb5a3ceb9eea0d10 196 Pfam PF09335 SNARE associated Golgi protein 30 159 8.5E-21 T 26-04-2016 IPR032816 SNARE associated Golgi protein RGE_RS01030 54a2ce23d95ab3e3bb5a3ceb9eea0d10 196 PANTHER PTHR30353:SF13 1 196 1.1E-60 T 26-04-2016 RGE_RS09035 536602b4cf9082234b9a8d2d203d6205 226 PANTHER PTHR18901 1 210 1.0E-53 T 26-04-2016 RGE_RS09035 536602b4cf9082234b9a8d2d203d6205 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 75 186 6.0E-18 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS09035 536602b4cf9082234b9a8d2d203d6205 226 Gene3D G3DSA:3.40.50.1000 92 192 5.7E-38 T 26-04-2016 IPR023214 HAD-like domain RGE_RS09035 536602b4cf9082234b9a8d2d203d6205 226 Gene3D G3DSA:3.40.50.1000 4 19 5.7E-38 T 26-04-2016 IPR023214 HAD-like domain RGE_RS09035 536602b4cf9082234b9a8d2d203d6205 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 10 187 7.2E-22 T 26-04-2016 IPR023214 HAD-like domain RGE_RS09035 536602b4cf9082234b9a8d2d203d6205 226 SUPERFAMILY SSF56784 6 195 1.79E-48 T 26-04-2016 IPR023214 HAD-like domain RGE_RS09035 536602b4cf9082234b9a8d2d203d6205 226 Gene3D G3DSA:1.10.150.240 20 83 6.2E-9 T 26-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 Pfam PF17200 Single Cache domain 2 37 192 1.4E-32 T 26-04-2016 IPR033480 Single Cache domain 2 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 SMART SM00283 270 517 1.9E-86 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 PANTHER PTHR32089 182 518 5.0E-122 T 26-04-2016 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 SUPERFAMILY SSF58104 255 518 3.53E-64 T 26-04-2016 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 SMART SM01049 34 131 1.7E-28 T 26-04-2016 IPR033480 Single Cache domain 2 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 Gene3D G3DSA:1.10.287.950 288 489 4.1E-56 T 26-04-2016 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 PANTHER PTHR32089:SF63 182 518 5.0E-122 T 26-04-2016 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 516 1.1E-57 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 Gene3D G3DSA:3.30.450.20 22 186 2.2E-39 T 26-04-2016 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 397 426 1.1E-47 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 368 395 1.1E-47 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 445 474 1.1E-47 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 291 320 1.1E-47 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS21710 b97dde27990a492391cede6a486a918c 518 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 193 213 1.1E-47 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS21500 7d954eea206b01cf699414ad8974f2fa 415 PANTHER PTHR24023 71 402 6.0E-40 T 26-04-2016 RGE_RS21500 7d954eea206b01cf699414ad8974f2fa 415 Gene3D G3DSA:3.30.1540.10 242 324 1.2E-35 T 26-04-2016 RGE_RS21500 7d954eea206b01cf699414ad8974f2fa 415 Pfam PF02515 CoA-transferase family III 9 392 1.3E-133 T 26-04-2016 IPR003673 CoA-transferase family III GO:0003824 RGE_RS21500 7d954eea206b01cf699414ad8974f2fa 415 Gene3D G3DSA:3.40.50.10540 6 236 4.2E-125 T 26-04-2016 IPR023606 CoA-transferase family III domain RGE_RS21500 7d954eea206b01cf699414ad8974f2fa 415 Gene3D G3DSA:3.40.50.10540 325 415 4.2E-125 T 26-04-2016 IPR023606 CoA-transferase family III domain RGE_RS21500 7d954eea206b01cf699414ad8974f2fa 415 SUPERFAMILY SSF89796 7 415 1.09E-144 T 26-04-2016 IPR023606 CoA-transferase family III domain RGE_RS21500 7d954eea206b01cf699414ad8974f2fa 415 PANTHER PTHR24023:SF593 71 402 6.0E-40 T 26-04-2016 RGE_RS20485 5b278feef8a77497fd34380ee1fdb7e3 189 Gene3D G3DSA:3.30.70.1300 44 132 4.2E-32 T 26-04-2016 RGE_RS20485 5b278feef8a77497fd34380ee1fdb7e3 189 PANTHER PTHR30327 1 189 1.1E-56 T 26-04-2016 RGE_RS20485 5b278feef8a77497fd34380ee1fdb7e3 189 Gene3D G3DSA:3.40.1740.10 133 179 1.1E-33 T 26-04-2016 RGE_RS20485 5b278feef8a77497fd34380ee1fdb7e3 189 Gene3D G3DSA:3.40.1740.10 6 43 1.1E-33 T 26-04-2016 RGE_RS20485 5b278feef8a77497fd34380ee1fdb7e3 189 Pfam PF02622 Uncharacterized ACR, COG1678 15 176 8.9E-51 T 26-04-2016 IPR003774 Protein of unknown function UPF0301 RGE_RS20485 5b278feef8a77497fd34380ee1fdb7e3 189 PANTHER PTHR30327:SF1 1 189 1.1E-56 T 26-04-2016 RGE_RS20485 5b278feef8a77497fd34380ee1fdb7e3 189 SUPERFAMILY SSF143456 6 189 9.94E-64 T 26-04-2016 RGE_RS20485 5b278feef8a77497fd34380ee1fdb7e3 189 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 4 189 37.785 T 26-04-2016 IPR003774 Protein of unknown function UPF0301 RGE_RS10375 b873bfc42e161b107df724604d68c79f 259 Gene3D G3DSA:1.10.1060.10 115 240 3.0E-33 T 26-04-2016 RGE_RS10375 b873bfc42e161b107df724604d68c79f 259 SUPERFAMILY SSF46548 116 238 9.24E-28 T 26-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RGE_RS10375 b873bfc42e161b107df724604d68c79f 259 Pfam PF13183 4Fe-4S dicluster domain 155 228 1.6E-11 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS10375 b873bfc42e161b107df724604d68c79f 259 Gene3D G3DSA:3.10.20.30 10 114 5.5E-33 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS10375 b873bfc42e161b107df724604d68c79f 259 PANTHER PTHR11921:SF12 9 238 5.7E-82 T 26-04-2016 RGE_RS10375 b873bfc42e161b107df724604d68c79f 259 SUPERFAMILY SSF54292 12 114 1.44E-27 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS10375 b873bfc42e161b107df724604d68c79f 259 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 158 169 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS10375 b873bfc42e161b107df724604d68c79f 259 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 19 238 6.5E-82 T 26-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RGE_RS10375 b873bfc42e161b107df724604d68c79f 259 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 65 73 - T 26-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RGE_RS10375 b873bfc42e161b107df724604d68c79f 259 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 16 119 3.3E-31 T 26-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RGE_RS10375 b873bfc42e161b107df724604d68c79f 259 PANTHER PTHR11921 9 238 5.7E-82 T 26-04-2016 RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 Pfam PF05860 haemagglutination activity domain 65 174 2.9E-22 T 26-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 PANTHER PTHR12338 409 553 5.4E-80 T 26-04-2016 RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 PANTHER PTHR12338 8 296 5.4E-80 T 26-04-2016 RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 SMART SM00912 63 175 3.7E-39 T 26-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 Gene3D G3DSA:2.160.20.10 98 341 4.8E-17 T 26-04-2016 IPR012334 Pectin lyase fold RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 Pfam PF13018 Extended Signal Peptide of Type V secretion system 9 31 3.7E-7 T 26-04-2016 IPR024973 ESPR domain RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 SUPERFAMILY SSF49313 3729 3809 2.67E-13 T 26-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 PANTHER PTHR12338:SF6 409 553 5.4E-80 T 26-04-2016 RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 PANTHER PTHR12338:SF6 8 296 5.4E-80 T 26-04-2016 RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 SMART SM00736 3720 3813 0.0013 T 26-04-2016 IPR006644 Dystroglycan-type cadherin-like GO:0016020 RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 97 171 4.4E-23 T 26-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 SUPERFAMILY SSF51126 65 277 1.26E-43 T 26-04-2016 IPR011050 Pectin lyase fold/virulence factor RGE_RS18735 cea8196a48c16c918b5366c1e83ca17e 3813 Gene3D G3DSA:2.60.40.10 3723 3809 5.7E-16 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS08760 554c510bead55182f7423defe4f7af2d 338 Pfam PF13401 AAA domain 43 208 7.3E-24 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS08760 554c510bead55182f7423defe4f7af2d 338 SUPERFAMILY SSF52540 33 202 2.66E-12 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08760 554c510bead55182f7423defe4f7af2d 338 Gene3D G3DSA:3.40.50.300 43 219 7.3E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08760 554c510bead55182f7423defe4f7af2d 338 SMART SM00382 43 227 4.4E-6 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS06800 2e416d9d3d9b9b2b6e631f27b3cb46bc 103 SUPERFAMILY SSF47729 1 92 1.0E-30 T 26-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RGE_RS06800 2e416d9d3d9b9b2b6e631f27b3cb46bc 103 Gene3D G3DSA:4.10.520.10 1 95 7.8E-34 T 26-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RGE_RS06800 2e416d9d3d9b9b2b6e631f27b3cb46bc 103 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 5.7E-17 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS06800 2e416d9d3d9b9b2b6e631f27b3cb46bc 103 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 5.7E-17 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS06800 2e416d9d3d9b9b2b6e631f27b3cb46bc 103 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 5.7E-17 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS06800 2e416d9d3d9b9b2b6e631f27b3cb46bc 103 PANTHER PTHR33175:SF5 1 98 2.4E-40 T 26-04-2016 RGE_RS06800 2e416d9d3d9b9b2b6e631f27b3cb46bc 103 Pfam PF00216 Bacterial DNA-binding protein 1 90 6.6E-30 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS06800 2e416d9d3d9b9b2b6e631f27b3cb46bc 103 SMART SM00411 1 91 1.3E-37 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS06800 2e416d9d3d9b9b2b6e631f27b3cb46bc 103 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 91 1.4E-37 T 26-04-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 RGE_RS06800 2e416d9d3d9b9b2b6e631f27b3cb46bc 103 PANTHER PTHR33175 1 98 2.4E-40 T 26-04-2016 RGE_RS22330 4edd31e7983b25ef0fa213679e686ae2 218 PANTHER PTHR22854 2 214 8.1E-29 T 26-04-2016 RGE_RS22330 4edd31e7983b25ef0fa213679e686ae2 218 SUPERFAMILY SSF51366 3 217 2.67E-35 T 26-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RGE_RS22330 4edd31e7983b25ef0fa213679e686ae2 218 PANTHER PTHR22854:SF6 2 214 8.1E-29 T 26-04-2016 RGE_RS22330 4edd31e7983b25ef0fa213679e686ae2 218 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 213 2.8E-20 T 26-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 RGE_RS22330 4edd31e7983b25ef0fa213679e686ae2 218 Gene3D G3DSA:3.20.20.70 3 216 3.4E-46 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS22330 4edd31e7983b25ef0fa213679e686ae2 218 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 218 24.615 T 26-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 RGE_RS05750 6d955c41f7d290ff41e47660692b0b6c 104 SMART SM00528 49 92 1.2E-5 T 26-04-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RGE_RS05750 6d955c41f7d290ff41e47660692b0b6c 104 SUPERFAMILY SSF81273 55 93 2.2E-9 T 26-04-2016 RGE_RS05750 6d955c41f7d290ff41e47660692b0b6c 104 Gene3D G3DSA:4.10.430.10 56 92 8.8E-11 T 26-04-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RGE_RS05750 6d955c41f7d290ff41e47660692b0b6c 104 Pfam PF00816 H-NS histone family 6 85 3.1E-17 T 26-04-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 RGE_RS07345 fde1c528f1df7ba09b639aa31e5f44ff 318 SUPERFAMILY SSF64397 4 255 5.1E-55 T 26-04-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RGE_RS07345 fde1c528f1df7ba09b639aa31e5f44ff 318 Gene3D G3DSA:1.10.287.480 205 247 3.8E-15 T 26-04-2016 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain RGE_RS07345 fde1c528f1df7ba09b639aa31e5f44ff 318 PANTHER PTHR30111:SF1 4 311 1.5E-45 T 26-04-2016 RGE_RS07345 fde1c528f1df7ba09b639aa31e5f44ff 318 Gene3D G3DSA:3.55.30.10 4 186 1.0E-55 T 26-04-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RGE_RS07345 fde1c528f1df7ba09b639aa31e5f44ff 318 PANTHER PTHR30111 4 311 1.5E-45 T 26-04-2016 RGE_RS07345 fde1c528f1df7ba09b639aa31e5f44ff 318 Gene3D G3DSA:3.90.1280.10 249 305 5.3E-24 T 26-04-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RGE_RS07345 fde1c528f1df7ba09b639aa31e5f44ff 318 PIRSF PIRSF005261 1 308 9.5E-64 T 26-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RGE_RS07345 fde1c528f1df7ba09b639aa31e5f44ff 318 Pfam PF01430 Hsp33 protein 4 296 3.6E-80 T 26-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RGE_RS07345 fde1c528f1df7ba09b639aa31e5f44ff 318 SUPERFAMILY SSF118352 249 305 4.58E-19 T 26-04-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RGE_RS21285 f43c57e7c83956d4fe2709cb84b3d882 202 PANTHER PTHR23133:SF7 5 149 5.3E-53 T 26-04-2016 RGE_RS21285 f43c57e7c83956d4fe2709cb84b3d882 202 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 8 147 9.2E-40 T 26-04-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 RGE_RS21285 f43c57e7c83956d4fe2709cb84b3d882 202 Gene3D G3DSA:3.40.50.1000 4 161 9.8E-46 T 26-04-2016 IPR023214 HAD-like domain RGE_RS21285 f43c57e7c83956d4fe2709cb84b3d882 202 Pfam PF13242 HAD-hyrolase-like 104 167 1.1E-7 T 26-04-2016 RGE_RS21285 f43c57e7c83956d4fe2709cb84b3d882 202 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 7 146 2.8E-27 T 26-04-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA RGE_RS21285 f43c57e7c83956d4fe2709cb84b3d882 202 PANTHER PTHR23133 5 149 5.3E-53 T 26-04-2016 RGE_RS21285 f43c57e7c83956d4fe2709cb84b3d882 202 SUPERFAMILY SSF56784 4 161 1.5E-39 T 26-04-2016 IPR023214 HAD-like domain RGE_RS01945 4bf48c930d88f219815f88f1f0e2d5e4 335 Gene3D G3DSA:3.40.50.720 1 198 1.3E-62 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS01945 4bf48c930d88f219815f88f1f0e2d5e4 335 PANTHER PTHR10366 2 335 2.5E-185 T 26-04-2016 RGE_RS01945 4bf48c930d88f219815f88f1f0e2d5e4 335 SUPERFAMILY SSF51735 1 333 7.25E-92 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS01945 4bf48c930d88f219815f88f1f0e2d5e4 335 Gene3D G3DSA:3.90.25.10 260 330 1.5E-17 T 26-04-2016 RGE_RS01945 4bf48c930d88f219815f88f1f0e2d5e4 335 Gene3D G3DSA:3.90.25.10 199 218 1.5E-17 T 26-04-2016 RGE_RS01945 4bf48c930d88f219815f88f1f0e2d5e4 335 PANTHER PTHR10366:SF77 2 335 2.5E-185 T 26-04-2016 RGE_RS01945 4bf48c930d88f219815f88f1f0e2d5e4 335 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 240 2.4E-55 T 26-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RGE_RS01945 4bf48c930d88f219815f88f1f0e2d5e4 335 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 9.4E-29 T 26-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 RGE_RS01945 4bf48c930d88f219815f88f1f0e2d5e4 335 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 9.4E-29 T 26-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 RGE_RS01945 4bf48c930d88f219815f88f1f0e2d5e4 335 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 9.4E-29 T 26-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 RGE_RS01945 4bf48c930d88f219815f88f1f0e2d5e4 335 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 9.4E-29 T 26-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 RGE_RS19500 7954cd6ae60b2418b78e033663fc5099 239 Pfam PF00027 Cyclic nucleotide-binding domain 43 130 2.7E-8 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS19500 7954cd6ae60b2418b78e033663fc5099 239 Pfam PF13545 Crp-like helix-turn-helix domain 162 235 2.0E-12 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS19500 7954cd6ae60b2418b78e033663fc5099 239 SUPERFAMILY SSF51206 27 151 1.7E-17 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS19500 7954cd6ae60b2418b78e033663fc5099 239 SMART SM00419 180 228 2.7E-6 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS19500 7954cd6ae60b2418b78e033663fc5099 239 Gene3D G3DSA:1.10.10.10 159 236 1.8E-12 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19500 7954cd6ae60b2418b78e033663fc5099 239 Gene3D G3DSA:2.60.120.10 28 156 1.6E-14 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS19500 7954cd6ae60b2418b78e033663fc5099 239 PANTHER PTHR24567 28 236 1.4E-24 T 26-04-2016 RGE_RS19500 7954cd6ae60b2418b78e033663fc5099 239 SUPERFAMILY SSF46785 159 236 1.78E-11 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09640 c74db6abc74455f014eb0a2e5a172318 237 SMART SM00047 77 235 1.1E-23 T 26-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RGE_RS09640 c74db6abc74455f014eb0a2e5a172318 237 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 98 234 4.3E-20 T 26-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RGE_RS09640 c74db6abc74455f014eb0a2e5a172318 237 PANTHER PTHR33308:SF3 92 232 1.5E-19 T 26-04-2016 RGE_RS09640 c74db6abc74455f014eb0a2e5a172318 237 PANTHER PTHR33308 92 232 1.5E-19 T 26-04-2016 RGE_RS09640 c74db6abc74455f014eb0a2e5a172318 237 Gene3D G3DSA:1.10.530.10 197 214 4.3E-5 T 26-04-2016 RGE_RS09640 c74db6abc74455f014eb0a2e5a172318 237 Gene3D G3DSA:1.10.530.10 80 127 4.3E-5 T 26-04-2016 RGE_RS11150 64b69bac0c6cea92255780e16ebca94c 375 Gene3D G3DSA:3.60.21.10 147 321 1.3E-24 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS11150 64b69bac0c6cea92255780e16ebca94c 375 SUPERFAMILY SSF56300 147 368 7.08E-41 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS11150 64b69bac0c6cea92255780e16ebca94c 375 Pfam PF00149 Calcineurin-like phosphoesterase 147 314 8.9E-11 T 26-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RGE_RS11150 64b69bac0c6cea92255780e16ebca94c 375 PANTHER PTHR31302:SF7 107 374 1.8E-80 T 26-04-2016 RGE_RS11150 64b69bac0c6cea92255780e16ebca94c 375 PANTHER PTHR31302 107 374 1.8E-80 T 26-04-2016 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 Pfam PF02601 Exonuclease VII, large subunit 127 415 9.6E-87 T 26-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 Pfam PF13742 OB-fold nucleic acid binding domain 9 104 3.8E-23 T 26-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 536 637 7.8E-34 T 26-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 5 419 26.455 T 26-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 SUPERFAMILY SSF46609 448 530 4.98E-32 T 26-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 SUPERFAMILY SSF54719 532 640 1.83E-40 T 26-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 451 529 5.2E-30 T 26-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 PRINTS PR01703 Manganese superoxide dismutase signature 474 487 1.6E-20 T 26-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 PRINTS PR01703 Manganese superoxide dismutase signature 565 573 1.6E-20 T 26-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 PRINTS PR01703 Manganese superoxide dismutase signature 453 464 1.6E-20 T 26-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 PRINTS PR01703 Manganese superoxide dismutase signature 512 525 1.6E-20 T 26-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 PRINTS PR01703 Manganese superoxide dismutase signature 602 614 1.6E-20 T 26-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 604 611 - T 26-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 PANTHER PTHR30008:SF0 1 431 6.2E-135 T 26-04-2016 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 10 418 3.1E-124 T 26-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 Gene3D G3DSA:1.10.287.990 467 529 1.1E-22 T 26-04-2016 RGE_RS15560 eb48177c68291e47ec793dddb0f216a1 641 PANTHER PTHR30008 1 431 6.2E-135 T 26-04-2016 RGE_RS21615 90140317ae9c1335573c9947fc4d66fd 145 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 9 94 1.2E-14 T 26-04-2016 IPR013362 Pilus modification type IV, PilV RGE_RS07645 4b9db68721ee5758b7f4247fbf42637b 129 Pfam PF03840 Preprotein translocase SecG subunit 8 76 1.1E-21 T 26-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RGE_RS07645 4b9db68721ee5758b7f4247fbf42637b 129 PRINTS PR01651 Protein-export SecG membrane protein signature 6 26 9.6E-34 T 26-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RGE_RS07645 4b9db68721ee5758b7f4247fbf42637b 129 PRINTS PR01651 Protein-export SecG membrane protein signature 41 57 9.6E-34 T 26-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RGE_RS07645 4b9db68721ee5758b7f4247fbf42637b 129 PRINTS PR01651 Protein-export SecG membrane protein signature 26 40 9.6E-34 T 26-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RGE_RS07645 4b9db68721ee5758b7f4247fbf42637b 129 PRINTS PR01651 Protein-export SecG membrane protein signature 57 79 9.6E-34 T 26-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RGE_RS07645 4b9db68721ee5758b7f4247fbf42637b 129 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 5 76 5.8E-27 T 26-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RGE_RS07645 4b9db68721ee5758b7f4247fbf42637b 129 PANTHER PTHR34182 5 129 4.8E-29 T 26-04-2016 RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 26 253 7.3E-62 T 26-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 1 299 55.536 T 26-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 PANTHER PTHR23293 3 155 1.6E-88 T 26-04-2016 RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 PIRSF PIRSF002936 1 299 1.1E-153 T 26-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 PANTHER PTHR23293:SF6 175 208 1.6E-88 T 26-04-2016 RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 PANTHER PTHR23293:SF6 3 155 1.6E-88 T 26-04-2016 RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 PANTHER PTHR23293 175 208 1.6E-88 T 26-04-2016 RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 PANTHER PTHR23293 242 299 1.6E-88 T 26-04-2016 RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 6 299 1.1E-153 T 26-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 Gene3D G3DSA:3.40.50.620 241 250 1.2E-60 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 Gene3D G3DSA:3.40.50.620 3 207 1.2E-60 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 SUPERFAMILY SSF52402 2 207 1.65E-73 T 26-04-2016 RGE_RS15210 a3aeba5e40ff5c83a7562ee77614886c 299 PANTHER PTHR23293:SF6 242 299 1.6E-88 T 26-04-2016 RGE_RS05575 4a3b0d5c19971b527f35905b6f7dffd5 94 PANTHER PTHR33677 1 94 7.7E-24 T 26-04-2016 RGE_RS05575 4a3b0d5c19971b527f35905b6f7dffd5 94 Gene3D G3DSA:1.10.357.10 3 86 7.2E-4 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS05575 4a3b0d5c19971b527f35905b6f7dffd5 94 Pfam PF02583 Metal-sensitive transcriptional repressor 7 87 5.2E-20 T 26-04-2016 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 RGE_RS08245 7bbca1131923c525a63e0ac4e77609c5 366 PRINTS PR01007 Flagellar hook-length control protein signature 254 272 3.8E-12 T 26-04-2016 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 RGE_RS08245 7bbca1131923c525a63e0ac4e77609c5 366 PRINTS PR01007 Flagellar hook-length control protein signature 287 310 3.8E-12 T 26-04-2016 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 RGE_RS08245 7bbca1131923c525a63e0ac4e77609c5 366 PRINTS PR01007 Flagellar hook-length control protein signature 272 287 3.8E-12 T 26-04-2016 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 RGE_RS08245 7bbca1131923c525a63e0ac4e77609c5 366 PRINTS PR01007 Flagellar hook-length control protein signature 87 110 3.8E-12 T 26-04-2016 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 RGE_RS08245 7bbca1131923c525a63e0ac4e77609c5 366 PRINTS PR01007 Flagellar hook-length control protein signature 229 251 3.8E-12 T 26-04-2016 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 RGE_RS08245 7bbca1131923c525a63e0ac4e77609c5 366 Pfam PF02120 Flagellar hook-length control protein FliK 240 319 8.2E-21 T 26-04-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal RGE_RS08245 7bbca1131923c525a63e0ac4e77609c5 366 PANTHER PTHR37533 90 366 1.5E-25 T 26-04-2016 RGE_RS08195 32cd50b297dc0349cfca636438e45b38 296 Gene3D G3DSA:1.10.600.10 6 295 1.1E-92 T 26-04-2016 IPR008949 Isoprenoid synthase domain RGE_RS08195 32cd50b297dc0349cfca636438e45b38 296 PANTHER PTHR12001 6 289 3.4E-104 T 26-04-2016 IPR017446 Polyprenyl synthetase-related RGE_RS08195 32cd50b297dc0349cfca636438e45b38 296 Pfam PF00348 Polyprenyl synthetase 34 261 1.2E-57 T 26-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RGE_RS08195 32cd50b297dc0349cfca636438e45b38 296 SUPERFAMILY SSF48576 12 274 2.7E-84 T 26-04-2016 IPR008949 Isoprenoid synthase domain RGE_RS08195 32cd50b297dc0349cfca636438e45b38 296 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 214 226 - T 26-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RGE_RS08195 32cd50b297dc0349cfca636438e45b38 296 PANTHER PTHR12001:SF23 6 289 3.4E-104 T 26-04-2016 RGE_RS08195 32cd50b297dc0349cfca636438e45b38 296 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 83 99 - T 26-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RGE_RS07200 fcce3a2b768b6d87a627417b324ae16d 265 PANTHER PTHR10799:SF750 45 100 1.1E-22 T 26-04-2016 RGE_RS07200 fcce3a2b768b6d87a627417b324ae16d 265 PANTHER PTHR10799:SF750 139 262 1.1E-22 T 26-04-2016 RGE_RS07200 fcce3a2b768b6d87a627417b324ae16d 265 Pfam PF00990 Diguanylate cyclase, GGDEF domain 106 261 8.2E-42 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07200 fcce3a2b768b6d87a627417b324ae16d 265 SUPERFAMILY SSF55073 111 263 2.2E-46 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS07200 fcce3a2b768b6d87a627417b324ae16d 265 Gene3D G3DSA:3.30.70.270 108 263 7.4E-52 T 26-04-2016 RGE_RS07200 fcce3a2b768b6d87a627417b324ae16d 265 SMART SM00267 95 265 4.3E-53 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07200 fcce3a2b768b6d87a627417b324ae16d 265 PANTHER PTHR10799 45 100 1.1E-22 T 26-04-2016 RGE_RS07200 fcce3a2b768b6d87a627417b324ae16d 265 PANTHER PTHR10799 139 262 1.1E-22 T 26-04-2016 RGE_RS07200 fcce3a2b768b6d87a627417b324ae16d 265 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 104 263 1.1E-45 T 26-04-2016 IPR000160 GGDEF domain RGE_RS16805 cbef9abf0eb11bb9bee99160302b157a 604 PANTHER PTHR21000 1 601 0.0 T 26-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS16805 cbef9abf0eb11bb9bee99160302b157a 604 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 3 602 3.1E-278 T 26-04-2016 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12|UniPathway: UPA00226 RGE_RS16805 cbef9abf0eb11bb9bee99160302b157a 604 PANTHER PTHR21000:SF9 1 601 0.0 T 26-04-2016 RGE_RS16805 cbef9abf0eb11bb9bee99160302b157a 604 Pfam PF00920 Dehydratase family 66 600 3.4E-158 T 26-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS16805 cbef9abf0eb11bb9bee99160302b157a 604 SUPERFAMILY SSF52016 418 603 7.06E-59 T 26-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RGE_RS16805 cbef9abf0eb11bb9bee99160302b157a 604 SUPERFAMILY SSF143975 1 417 1.7E-132 T 26-04-2016 RGE_RS16805 cbef9abf0eb11bb9bee99160302b157a 604 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 504 515 - T 26-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS16805 cbef9abf0eb11bb9bee99160302b157a 604 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 154 164 - T 26-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 PIRSF PIRSF001413 8 432 1.1E-115 T 26-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 Gene3D G3DSA:3.40.50.1100 208 431 2.9E-54 T 26-04-2016 RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 PANTHER PTHR10314:SF21 30 184 1.2E-231 T 26-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 PANTHER PTHR10314:SF21 201 448 1.2E-231 T 26-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 Gene3D G3DSA:3.40.50.1100 132 198 5.2E-10 T 26-04-2016 RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 SUPERFAMILY SSF53686 26 425 7.46E-105 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 104 118 - T 26-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 20 426 38.001 T 26-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 TIGRFAM TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme 12 428 6.9E-186 T 26-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 PANTHER PTHR10314 30 184 1.2E-231 T 26-04-2016 RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 PANTHER PTHR10314 201 448 1.2E-231 T 26-04-2016 RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 PIRSF PIRSF500824 1 435 5.3E-194 T 26-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RGE_RS13100 e4d4dff432ac67155192c38eddebb764 452 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 74 413 5.9E-43 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS19905 3692b96033660c119298d2f4fb436452 242 PIRSF PIRSF009467 17 242 1.1E-62 T 26-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RGE_RS19905 3692b96033660c119298d2f4fb436452 242 Hamap MF_01385 Urease accessory protein UreF [ureF]. 20 242 30.728 T 26-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RGE_RS19905 3692b96033660c119298d2f4fb436452 242 PANTHER PTHR33620 18 242 6.3E-36 T 26-04-2016 RGE_RS19905 3692b96033660c119298d2f4fb436452 242 Pfam PF01730 UreF 54 200 1.9E-45 T 26-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RGE_RS03840 ed5fb3042af73c74137cf2cdf7643c66 423 PANTHER PTHR30489 231 423 8.5E-39 T 26-04-2016 RGE_RS03840 ed5fb3042af73c74137cf2cdf7643c66 423 PANTHER PTHR30489 7 208 8.5E-39 T 26-04-2016 RGE_RS03840 ed5fb3042af73c74137cf2cdf7643c66 423 Pfam PF12704 MacB-like periplasmic core domain 20 198 2.2E-13 T 26-04-2016 IPR025857 MacB-like periplasmic core domain RGE_RS03840 ed5fb3042af73c74137cf2cdf7643c66 423 Pfam PF02687 FtsX-like permease family 298 415 3.6E-16 T 26-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RGE_RS00325 6a72b3e682a723324bd6cce7a191d902 94 Pfam PF13202 EF hand 34 52 3.4E-5 T 26-04-2016 IPR002048 EF-hand domain GO:0005509 RGE_RS00325 6a72b3e682a723324bd6cce7a191d902 94 Pfam PF13202 EF hand 63 81 6.2E-5 T 26-04-2016 IPR002048 EF-hand domain GO:0005509 RGE_RS00325 6a72b3e682a723324bd6cce7a191d902 94 Gene3D G3DSA:1.10.238.10 27 84 6.0E-10 T 26-04-2016 IPR011992 EF-hand domain pair RGE_RS00325 6a72b3e682a723324bd6cce7a191d902 94 SUPERFAMILY SSF47473 25 83 1.78E-10 T 26-04-2016 IPR011992 EF-hand domain pair RGE_RS00325 6a72b3e682a723324bd6cce7a191d902 94 ProSitePatterns PS00018 EF-hand calcium-binding domain. 67 79 - T 26-04-2016 IPR018247 EF-Hand 1, calcium-binding site RGE_RS07415 515e330b4c7bf92296386d9dc3acec21 342 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 8 340 33.442 T 26-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RGE_RS07415 515e330b4c7bf92296386d9dc3acec21 342 Pfam PF02277 Phosphoribosyltransferase 10 338 4.2E-120 T 26-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RGE_RS07415 515e330b4c7bf92296386d9dc3acec21 342 Gene3D G3DSA:1.10.1610.10 10 67 4.8E-30 T 26-04-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RGE_RS07415 515e330b4c7bf92296386d9dc3acec21 342 Gene3D G3DSA:3.40.50.10210 68 321 6.1E-99 T 26-04-2016 RGE_RS07415 515e330b4c7bf92296386d9dc3acec21 342 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 10 338 2.3E-127 T 26-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RGE_RS07415 515e330b4c7bf92296386d9dc3acec21 342 PANTHER PTHR21712 10 339 4.0E-98 T 26-04-2016 RGE_RS07415 515e330b4c7bf92296386d9dc3acec21 342 PANTHER PTHR21712:SF4 10 339 4.0E-98 T 26-04-2016 RGE_RS07415 515e330b4c7bf92296386d9dc3acec21 342 SUPERFAMILY SSF52733 8 339 1.83E-109 T 26-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RGE_RS16985 6d65e9cad4fc05181ea86034d3030cf7 376 Pfam PF08007 Cupin superfamily protein 15 286 3.6E-76 T 26-04-2016 IPR003347 JmjC domain RGE_RS16985 6d65e9cad4fc05181ea86034d3030cf7 376 SUPERFAMILY SSF51197 8 290 1.51E-69 T 26-04-2016 RGE_RS16985 6d65e9cad4fc05181ea86034d3030cf7 376 SMART SM00558 100 226 2.6E-5 T 26-04-2016 IPR003347 JmjC domain RGE_RS16985 6d65e9cad4fc05181ea86034d3030cf7 376 PANTHER PTHR13096 9 214 3.1E-32 T 26-04-2016 RGE_RS16985 6d65e9cad4fc05181ea86034d3030cf7 376 Gene3D G3DSA:2.60.120.650 9 211 2.1E-40 T 26-04-2016 RGE_RS14080 541a362aeeabc5fe6fa9f8e1344bf7cd 335 PANTHER PTHR11751 39 335 1.1E-14 T 26-04-2016 RGE_RS14080 541a362aeeabc5fe6fa9f8e1344bf7cd 335 Gene3D G3DSA:3.40.640.10 39 200 4.7E-16 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS14080 541a362aeeabc5fe6fa9f8e1344bf7cd 335 Gene3D G3DSA:3.90.1150.10 201 333 1.0E-10 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS14080 541a362aeeabc5fe6fa9f8e1344bf7cd 335 SUPERFAMILY SSF53383 18 333 4.58E-37 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS14080 541a362aeeabc5fe6fa9f8e1344bf7cd 335 Pfam PF00155 Aminotransferase class I and II 153 328 4.0E-9 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 295 310 - T 26-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 233 246 - T 26-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 Pfam PF02954 Bacterial regulatory protein, Fis family 551 587 7.2E-12 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 Pfam PF00158 Sigma-54 interaction domain 209 375 4.7E-72 T 26-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 SMART SM00382 229 372 2.9E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 Pfam PF01590 GAF domain 30 170 1.9E-12 T 26-04-2016 IPR003018 GAF domain GO:0005515 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 Gene3D G3DSA:3.40.50.300 206 380 7.1E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 Gene3D G3DSA:3.30.450.40 10 196 3.5E-22 T 26-04-2016 IPR029016 GAF domain-like RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 TIGRFAM TIGR01817 nifA: Nif-specific regulatory protein 13 594 1.2E-201 T 26-04-2016 IPR010113 Nif-specific regulatory protein GO:0003700|GO:0006355|GO:0009399 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 SUPERFAMILY SSF46689 539 589 2.46E-5 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 421 430 - T 26-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 PANTHER PTHR32071:SF18 160 459 8.2E-153 T 26-04-2016 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 PANTHER PTHR32071:SF18 524 593 8.2E-153 T 26-04-2016 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 SUPERFAMILY SSF55781 7 170 1.48E-19 T 26-04-2016 IPR029016 GAF domain-like RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 Gene3D G3DSA:1.10.10.60 551 586 1.1E-6 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 PANTHER PTHR32071 160 459 8.2E-153 T 26-04-2016 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 PANTHER PTHR32071 524 593 8.2E-153 T 26-04-2016 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 SUPERFAMILY SSF52540 208 444 1.25E-73 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 Gene3D G3DSA:1.10.8.60 381 447 1.2E-23 T 26-04-2016 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 553 570 1.0E-6 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 570 590 1.0E-6 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS21045 f7c813e279253460b8383f13a07f8109 594 SMART SM00065 30 182 3.9E-23 T 26-04-2016 IPR003018 GAF domain GO:0005515 RGE_RS17815 93df9f9da4b33a426bfb63335f873473 260 Gene3D G3DSA:3.40.50.10090 129 250 4.2E-11 T 26-04-2016 RGE_RS17815 93df9f9da4b33a426bfb63335f873473 260 Gene3D G3DSA:3.40.50.10090 5 113 1.4E-16 T 26-04-2016 RGE_RS17815 93df9f9da4b33a426bfb63335f873473 260 Pfam PF02602 Uroporphyrinogen-III synthase HemD 17 236 1.0E-35 T 26-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17815 93df9f9da4b33a426bfb63335f873473 260 PANTHER PTHR38042 1 258 6.5E-33 T 26-04-2016 RGE_RS17815 93df9f9da4b33a426bfb63335f873473 260 PANTHER PTHR38042:SF1 1 258 6.5E-33 T 26-04-2016 RGE_RS17815 93df9f9da4b33a426bfb63335f873473 260 SUPERFAMILY SSF69618 5 234 1.83E-47 T 26-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS22180 7526dd8a1a99de8b35ff8e352b77cb6d 311 SMART SM00342 222 307 3.6E-23 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS22180 7526dd8a1a99de8b35ff8e352b77cb6d 311 Gene3D G3DSA:1.10.10.60 203 259 2.3E-9 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS22180 7526dd8a1a99de8b35ff8e352b77cb6d 311 SUPERFAMILY SSF46689 258 306 5.66E-5 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS22180 7526dd8a1a99de8b35ff8e352b77cb6d 311 Pfam PF12833 Helix-turn-helix domain 228 309 2.1E-27 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS22180 7526dd8a1a99de8b35ff8e352b77cb6d 311 SUPERFAMILY SSF46689 207 256 2.84E-5 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS22180 7526dd8a1a99de8b35ff8e352b77cb6d 311 Gene3D G3DSA:1.10.10.60 260 305 2.0E-5 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS22180 7526dd8a1a99de8b35ff8e352b77cb6d 311 PANTHER PTHR11019 151 156 8.7E-25 T 26-04-2016 RGE_RS22180 7526dd8a1a99de8b35ff8e352b77cb6d 311 PANTHER PTHR11019 187 309 8.7E-25 T 26-04-2016 RGE_RS22180 7526dd8a1a99de8b35ff8e352b77cb6d 311 PANTHER PTHR11019:SF54 151 156 8.7E-25 T 26-04-2016 RGE_RS22180 7526dd8a1a99de8b35ff8e352b77cb6d 311 PANTHER PTHR11019:SF54 187 309 8.7E-25 T 26-04-2016 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 SUPERFAMILY SSF50447 182 279 7.28E-20 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 Gene3D G3DSA:3.30.70.870 298 375 7.4E-25 T 26-04-2016 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 176 1.4E-19 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 SUPERFAMILY SSF54980 298 376 4.32E-18 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 26-04-2016 IPR031157 Tr-type G domain, conserved site RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 Hamap MF_00071 Elongation factor 4 [lepA]. 1 602 301.846 T 26-04-2016 IPR006297 Elongation factor 4 GO:0005525 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 Gene3D G3DSA:3.30.70.240 407 495 6.2E-22 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 SMART SM00838 404 491 0.0023 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 SUPERFAMILY SSF54980 405 499 1.06E-25 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 Pfam PF03144 Elongation factor Tu domain 2 205 275 1.9E-10 T 26-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 PANTHER PTHR23115:SF175 4 379 1.9E-276 T 26-04-2016 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 PANTHER PTHR23115:SF175 403 601 1.9E-276 T 26-04-2016 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 Pfam PF00679 Elongation factor G C-terminus 405 490 9.2E-23 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 Gene3D G3DSA:2.40.30.10 194 294 4.5E-20 T 26-04-2016 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 Gene3D G3DSA:3.40.50.300 2 193 1.2E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 Pfam PF06421 GTP-binding protein LepA C-terminus 493 599 1.5E-47 T 26-04-2016 IPR013842 GTP-binding protein LepA, C-terminal RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 PRINTS PR00315 GTP-binding elongation factor signature 126 135 1.0E-14 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 PRINTS PR00315 GTP-binding elongation factor signature 90 101 1.0E-14 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 PRINTS PR00315 GTP-binding elongation factor signature 49 57 1.0E-14 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 PRINTS PR00315 GTP-binding elongation factor signature 6 19 1.0E-14 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 PRINTS PR00315 GTP-binding elongation factor signature 74 84 1.0E-14 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 TIGRFAM TIGR01393 lepA: elongation factor 4 3 601 1.2E-290 T 26-04-2016 IPR006297 Elongation factor 4 GO:0005525 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 Pfam PF00009 Elongation factor Tu GTP binding domain 3 181 6.0E-54 T 26-04-2016 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 SUPERFAMILY SSF52540 2 205 3.29E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 PANTHER PTHR23115 4 379 1.9E-276 T 26-04-2016 RGE_RS20035 2b2b69df2788789df8afd0c81d88768d 602 PANTHER PTHR23115 403 601 1.9E-276 T 26-04-2016 RGE_RS00960 458c45af42c5c473bba530761cf54036 414 SUPERFAMILY SSF54862 5 117 1.26E-19 T 26-04-2016 RGE_RS00960 458c45af42c5c473bba530761cf54036 414 PIRSF PIRSF000139 6 414 3.2E-100 T 26-04-2016 IPR012257 Glycolate oxidase, iron-sulphur subunit RGE_RS00960 458c45af42c5c473bba530761cf54036 414 PANTHER PTHR32479 14 411 8.4E-104 T 26-04-2016 RGE_RS00960 458c45af42c5c473bba530761cf54036 414 Gene3D G3DSA:1.10.1060.10 12 105 2.7E-22 T 26-04-2016 RGE_RS00960 458c45af42c5c473bba530761cf54036 414 PANTHER PTHR32479:SF2 14 411 8.4E-104 T 26-04-2016 RGE_RS00960 458c45af42c5c473bba530761cf54036 414 Pfam PF02754 Cysteine-rich domain 170 260 2.2E-8 T 26-04-2016 IPR004017 Cysteine-rich domain RGE_RS00960 458c45af42c5c473bba530761cf54036 414 Pfam PF02754 Cysteine-rich domain 310 394 1.2E-9 T 26-04-2016 IPR004017 Cysteine-rich domain RGE_RS00960 458c45af42c5c473bba530761cf54036 414 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS00960 458c45af42c5c473bba530761cf54036 414 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 25 36 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS00960 458c45af42c5c473bba530761cf54036 414 Pfam PF12838 4Fe-4S dicluster domain 24 89 1.7E-12 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 SUPERFAMILY SSF51735 4 236 1.0E-70 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 1.2E-9 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 160 1.2E-9 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 1.2E-9 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 235 8.3E-52 T 26-04-2016 RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 218 5.6E-36 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 5.6E-36 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 5.6E-36 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 5.6E-36 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 160 5.6E-36 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 179 5.6E-36 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 PANTHER PTHR24322 7 173 1.4E-45 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 172 8.0E-6 T 26-04-2016 RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 Gene3D G3DSA:3.40.50.720 5 236 9.4E-72 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14515 cc2fd2a11c8bd614ee1586d7247c698d 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 128 156 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS06245 860aa8b32aea4236813cced0ca96344d 293 PANTHER PTHR30348 2 136 2.3E-126 T 26-04-2016 RGE_RS06245 860aa8b32aea4236813cced0ca96344d 293 PANTHER PTHR30348 161 243 2.3E-126 T 26-04-2016 RGE_RS06245 860aa8b32aea4236813cced0ca96344d 293 PANTHER PTHR30348 262 293 2.3E-126 T 26-04-2016 RGE_RS06245 860aa8b32aea4236813cced0ca96344d 293 Pfam PF01904 Protein of unknown function DUF72 23 286 2.5E-69 T 26-04-2016 IPR002763 Protein of unknown function DUF72 RGE_RS06245 860aa8b32aea4236813cced0ca96344d 293 PANTHER PTHR30348:SF7 2 136 2.3E-126 T 26-04-2016 RGE_RS06245 860aa8b32aea4236813cced0ca96344d 293 PANTHER PTHR30348:SF7 161 243 2.3E-126 T 26-04-2016 RGE_RS06245 860aa8b32aea4236813cced0ca96344d 293 PANTHER PTHR30348:SF7 262 293 2.3E-126 T 26-04-2016 RGE_RS06245 860aa8b32aea4236813cced0ca96344d 293 SUPERFAMILY SSF117396 6 134 8.89E-79 T 26-04-2016 IPR002763 Protein of unknown function DUF72 RGE_RS06245 860aa8b32aea4236813cced0ca96344d 293 SUPERFAMILY SSF117396 161 288 8.89E-79 T 26-04-2016 IPR002763 Protein of unknown function DUF72 RGE_RS06245 860aa8b32aea4236813cced0ca96344d 293 Gene3D G3DSA:3.20.20.410 3 289 8.9E-91 T 26-04-2016 IPR002763 Protein of unknown function DUF72 RGE_RS14740 e4279905ed70cbced1b6c565951626aa 246 PANTHER PTHR38033 34 233 1.4E-21 T 26-04-2016 RGE_RS14740 e4279905ed70cbced1b6c565951626aa 246 Pfam PF09850 Type VI secretion system protein DotU 17 215 2.0E-48 T 26-04-2016 IPR017732 Type IV / VI secretion system, DotU RGE_RS14740 e4279905ed70cbced1b6c565951626aa 246 PANTHER PTHR38033:SF1 34 233 1.4E-21 T 26-04-2016 RGE_RS14740 e4279905ed70cbced1b6c565951626aa 246 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 17 219 1.3E-47 T 26-04-2016 IPR017732 Type IV / VI secretion system, DotU RGE_RS12145 a960b5fa4672287371b0252b8ad26ae9 364 Pfam PF15887 Putative zinc-binding metallo-peptidase 114 364 1.2E-101 T 26-04-2016 IPR031321 Uncharacterised conserved protein UCP012641, putative zinc-binding metallo-peptidase RGE_RS12145 a960b5fa4672287371b0252b8ad26ae9 364 PIRSF PIRSF012641 10 364 3.7E-120 T 26-04-2016 IPR031321 Uncharacterised conserved protein UCP012641, putative zinc-binding metallo-peptidase RGE_RS12145 a960b5fa4672287371b0252b8ad26ae9 364 Pfam PF10005 zinc-ribbon domain 13 109 2.3E-23 T 26-04-2016 IPR011201 Zinc-ribbon domain, bacteria RGE_RS22030 75352961128983e44c00983a2e01ceb7 113 SUPERFAMILY SSF69754 1 104 7.98E-33 T 26-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RGE_RS22030 75352961128983e44c00983a2e01ceb7 113 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 97 1.6E-25 T 26-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RGE_RS22030 75352961128983e44c00983a2e01ceb7 113 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 103 1.3E-31 T 26-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RGE_RS22030 75352961128983e44c00983a2e01ceb7 113 Gene3D G3DSA:3.30.160.100 1 100 4.4E-34 T 26-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RGE_RS22030 75352961128983e44c00983a2e01ceb7 113 PANTHER PTHR33231 1 105 3.1E-32 T 26-04-2016 RGE_RS19875 4da98314c90e9fa51d7e9ba44b9e17cc 327 PANTHER PTHR30349 10 322 2.2E-73 T 26-04-2016 RGE_RS19875 4da98314c90e9fa51d7e9ba44b9e17cc 327 PANTHER PTHR30349:SF16 10 322 2.2E-73 T 26-04-2016 RGE_RS19875 4da98314c90e9fa51d7e9ba44b9e17cc 327 Gene3D G3DSA:3.40.190.10 133 215 1.7E-5 T 26-04-2016 RGE_RS19875 4da98314c90e9fa51d7e9ba44b9e17cc 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 316 3.8E-65 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS19875 4da98314c90e9fa51d7e9ba44b9e17cc 327 PIRSF PIRSF017082 4 326 2.5E-72 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS19875 4da98314c90e9fa51d7e9ba44b9e17cc 327 SUPERFAMILY SSF53850 36 290 2.35E-10 T 26-04-2016 RGE_RS20495 fd94e02a163e42100de358fd339687a7 515 PANTHER PTHR32089 169 511 1.7E-127 T 26-04-2016 RGE_RS20495 fd94e02a163e42100de358fd339687a7 515 SMART SM00304 208 260 7.7E-8 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS20495 fd94e02a163e42100de358fd339687a7 515 Gene3D G3DSA:1.10.287.950 277 479 8.7E-55 T 26-04-2016 RGE_RS20495 fd94e02a163e42100de358fd339687a7 515 SUPERFAMILY SSF58104 228 511 9.42E-68 T 26-04-2016 RGE_RS20495 fd94e02a163e42100de358fd339687a7 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 282 311 5.0E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS20495 fd94e02a163e42100de358fd339687a7 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 359 386 5.0E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS20495 fd94e02a163e42100de358fd339687a7 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 388 417 5.0E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS20495 fd94e02a163e42100de358fd339687a7 515 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 436 465 5.0E-50 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS20495 fd94e02a163e42100de358fd339687a7 515 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 507 9.0E-53 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS20495 fd94e02a163e42100de358fd339687a7 515 PANTHER PTHR32089:SF63 169 511 1.7E-127 T 26-04-2016 RGE_RS20495 fd94e02a163e42100de358fd339687a7 515 SMART SM00283 261 508 1.7E-81 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS20495 fd94e02a163e42100de358fd339687a7 515 Pfam PF00672 HAMP domain 191 255 1.5E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS06905 b034547ca662a87882b8ab4ea8a8dfe5 375 Gene3D G3DSA:1.20.140.10 220 360 7.7E-30 T 26-04-2016 RGE_RS06905 b034547ca662a87882b8ab4ea8a8dfe5 375 SUPERFAMILY SSF47203 219 364 6.93E-33 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS06905 b034547ca662a87882b8ab4ea8a8dfe5 375 SUPERFAMILY SSF56645 1 211 1.96E-45 T 26-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RGE_RS06905 b034547ca662a87882b8ab4ea8a8dfe5 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 134 209 5.3E-9 T 26-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RGE_RS06905 b034547ca662a87882b8ab4ea8a8dfe5 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 219 366 2.8E-19 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS06905 b034547ca662a87882b8ab4ea8a8dfe5 375 PANTHER PTHR10909 1 369 2.3E-71 T 26-04-2016 RGE_RS06905 b034547ca662a87882b8ab4ea8a8dfe5 375 Gene3D G3DSA:2.40.110.10 125 198 1.5E-11 T 26-04-2016 RGE_RS06905 b034547ca662a87882b8ab4ea8a8dfe5 375 PANTHER PTHR10909:SF341 1 369 2.3E-71 T 26-04-2016 RGE_RS06905 b034547ca662a87882b8ab4ea8a8dfe5 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 115 4.3E-21 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS06905 b034547ca662a87882b8ab4ea8a8dfe5 375 Gene3D G3DSA:1.10.540.10 1 116 1.7E-24 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS06165 819bd53b995d07a4a5d95e67bd90b209 401 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 14 395 9.7E-127 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS06165 819bd53b995d07a4a5d95e67bd90b209 401 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 14 395 6.9E-161 T 26-04-2016 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 UniPathway: UPA00051 RGE_RS06165 819bd53b995d07a4a5d95e67bd90b209 401 PIRSF PIRSF001434 2 399 4.6E-123 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS06165 819bd53b995d07a4a5d95e67bd90b209 401 Gene3D G3DSA:3.40.640.10 14 260 1.2E-82 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS06165 819bd53b995d07a4a5d95e67bd90b209 401 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 204 218 - T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS06165 819bd53b995d07a4a5d95e67bd90b209 401 PANTHER PTHR11808:SF36 2 400 7.1E-184 T 26-04-2016 RGE_RS06165 819bd53b995d07a4a5d95e67bd90b209 401 SUPERFAMILY SSF53383 28 397 1.13E-111 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS06165 819bd53b995d07a4a5d95e67bd90b209 401 Gene3D G3DSA:3.90.1150.10 262 398 3.4E-46 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS06165 819bd53b995d07a4a5d95e67bd90b209 401 PANTHER PTHR11808 2 400 7.1E-184 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS17780 ceb7a38f40d500c00a908d41336a97f1 349 Pfam PF01841 Transglutaminase-like superfamily 133 225 1.7E-23 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS17780 ceb7a38f40d500c00a908d41336a97f1 349 SMART SM00460 163 227 9.1E-18 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS17780 ceb7a38f40d500c00a908d41336a97f1 349 PANTHER PTHR33490 2 265 4.3E-65 T 26-04-2016 RGE_RS17780 ceb7a38f40d500c00a908d41336a97f1 349 SUPERFAMILY SSF54001 104 250 1.28E-34 T 26-04-2016 RGE_RS17780 ceb7a38f40d500c00a908d41336a97f1 349 PANTHER PTHR33490:SF3 2 265 4.3E-65 T 26-04-2016 RGE_RS17780 ceb7a38f40d500c00a908d41336a97f1 349 Gene3D G3DSA:3.90.260.10 167 227 9.3E-8 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS09310 63fccf41728edba159bdd3eac6f33917 182 Gene3D G3DSA:3.40.630.30 17 151 1.6E-19 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS09310 63fccf41728edba159bdd3eac6f33917 182 SUPERFAMILY SSF55729 19 150 6.1E-20 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS09310 63fccf41728edba159bdd3eac6f33917 182 PANTHER PTHR23091 11 149 2.8E-18 T 26-04-2016 RGE_RS09310 63fccf41728edba159bdd3eac6f33917 182 PANTHER PTHR23091:SF225 11 149 2.8E-18 T 26-04-2016 RGE_RS09310 63fccf41728edba159bdd3eac6f33917 182 Pfam PF13508 Acetyltransferase (GNAT) domain 65 149 1.5E-9 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS14045 f4d4a8770757edfaae62972db6b925f5 233 SUPERFAMILY SSF47616 104 228 7.52E-30 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS14045 f4d4a8770757edfaae62972db6b925f5 233 PANTHER PTHR11260:SF178 20 230 5.5E-69 T 26-04-2016 RGE_RS14045 f4d4a8770757edfaae62972db6b925f5 233 PANTHER PTHR11260 20 230 5.5E-69 T 26-04-2016 RGE_RS14045 f4d4a8770757edfaae62972db6b925f5 233 Gene3D G3DSA:1.20.1050.10 101 225 9.9E-38 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS14045 f4d4a8770757edfaae62972db6b925f5 233 Pfam PF00043 Glutathione S-transferase, C-terminal domain 150 221 1.7E-9 T 26-04-2016 IPR004046 Glutathione S-transferase, C-terminal RGE_RS14045 f4d4a8770757edfaae62972db6b925f5 233 Pfam PF02798 Glutathione S-transferase, N-terminal domain 20 98 6.7E-15 T 26-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RGE_RS14045 f4d4a8770757edfaae62972db6b925f5 233 SUPERFAMILY SSF52833 9 102 1.62E-24 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS14045 f4d4a8770757edfaae62972db6b925f5 233 Gene3D G3DSA:3.40.30.10 7 100 2.6E-30 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS10190 46430191d99e14979e3d8caeda227b3e 220 PANTHER PTHR30450:SF1 8 220 5.2E-93 T 26-04-2016 RGE_RS10190 46430191d99e14979e3d8caeda227b3e 220 PANTHER PTHR30450 8 220 5.2E-93 T 26-04-2016 RGE_RS10190 46430191d99e14979e3d8caeda227b3e 220 Gene3D G3DSA:1.10.3720.10 10 219 3.5E-32 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS10190 46430191d99e14979e3d8caeda227b3e 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 54 220 9.9E-18 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS10190 46430191d99e14979e3d8caeda227b3e 220 SUPERFAMILY SSF161098 10 205 3.27E-37 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS06835 e51f5ed001969909ac7266e91d8b8771 215 PRINTS PR01021 OMPA domain signature 138 153 8.2E-20 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS06835 e51f5ed001969909ac7266e91d8b8771 215 PRINTS PR01021 OMPA domain signature 153 169 8.2E-20 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS06835 e51f5ed001969909ac7266e91d8b8771 215 PRINTS PR01021 OMPA domain signature 108 130 8.2E-20 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS06835 e51f5ed001969909ac7266e91d8b8771 215 Pfam PF00691 OmpA family 107 202 4.3E-25 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS06835 e51f5ed001969909ac7266e91d8b8771 215 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 171 190 1.0E-8 T 26-04-2016 RGE_RS06835 e51f5ed001969909ac7266e91d8b8771 215 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 191 211 1.0E-8 T 26-04-2016 RGE_RS06835 e51f5ed001969909ac7266e91d8b8771 215 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 153 170 1.0E-8 T 26-04-2016 RGE_RS06835 e51f5ed001969909ac7266e91d8b8771 215 PANTHER PTHR30128 54 213 1.6E-44 T 26-04-2016 RGE_RS06835 e51f5ed001969909ac7266e91d8b8771 215 Gene3D G3DSA:3.30.1330.60 93 209 2.1E-42 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS06835 e51f5ed001969909ac7266e91d8b8771 215 SUPERFAMILY SSF103088 82 208 2.09E-39 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS15720 d50e3f4194860ceff0cce5647ac01de6 722 PANTHER PTHR10569 257 329 4.1E-145 T 26-04-2016 IPR010401 Glycogen debranching enzyme GO:0004134|GO:0004135|GO:0005980 KEGG: 00500+3.2.1.33+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RGE_RS15720 d50e3f4194860ceff0cce5647ac01de6 722 PANTHER PTHR10569 349 666 4.1E-145 T 26-04-2016 IPR010401 Glycogen debranching enzyme GO:0004134|GO:0004135|GO:0005980 KEGG: 00500+3.2.1.33+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RGE_RS15720 d50e3f4194860ceff0cce5647ac01de6 722 Pfam PF14742 N-terminal domain of (some) glycogen debranching enzymes 27 220 2.1E-52 T 26-04-2016 IPR032856 Putative glycogen debranching enzyme, N-terminal RGE_RS15720 d50e3f4194860ceff0cce5647ac01de6 722 PANTHER PTHR10569:SF1 257 329 4.1E-145 T 26-04-2016 RGE_RS15720 d50e3f4194860ceff0cce5647ac01de6 722 PANTHER PTHR10569:SF1 349 666 4.1E-145 T 26-04-2016 RGE_RS15720 d50e3f4194860ceff0cce5647ac01de6 722 Pfam PF06202 Amylo-alpha-1,6-glucosidase 290 649 6.0E-10 T 26-04-2016 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25+3.2.1.33|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RGE_RS15720 d50e3f4194860ceff0cce5647ac01de6 722 SUPERFAMILY SSF48208 235 703 2.13E-89 T 26-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 RGE_RS14610 778119b58ff113af7a338217f537d362 433 Pfam PF13356 Domain of unknown function (DUF4102) 3 95 6.3E-16 T 26-04-2016 IPR025166 Domain of unknown function DUF4102 RGE_RS14610 778119b58ff113af7a338217f537d362 433 Gene3D G3DSA:1.10.150.130 108 205 1.3E-15 T 26-04-2016 IPR023109 Integrase/recombinase, N-terminal RGE_RS14610 778119b58ff113af7a338217f537d362 433 Gene3D G3DSA:1.10.443.10 218 389 3.3E-21 T 26-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS14610 778119b58ff113af7a338217f537d362 433 SUPERFAMILY SSF56349 108 398 5.3E-55 T 26-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RGE_RS14610 778119b58ff113af7a338217f537d362 433 PANTHER PTHR30629:SF3 1 432 2.4E-97 T 26-04-2016 RGE_RS14610 778119b58ff113af7a338217f537d362 433 PANTHER PTHR30629 1 432 2.4E-97 T 26-04-2016 RGE_RS14610 778119b58ff113af7a338217f537d362 433 Pfam PF00589 Phage integrase family 218 377 2.1E-12 T 26-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS05505 292a7ac242be007eb1de0c7db680bfc3 425 Pfam PF01168 Alanine racemase, N-terminal domain 54 290 1.0E-25 T 26-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS05505 292a7ac242be007eb1de0c7db680bfc3 425 Gene3D G3DSA:3.20.20.10 56 252 9.1E-15 T 26-04-2016 IPR029066 PLP-binding barrel RGE_RS05505 292a7ac242be007eb1de0c7db680bfc3 425 SUPERFAMILY SSF51419 55 291 1.54E-23 T 26-04-2016 IPR029066 PLP-binding barrel RGE_RS14090 d2eaa88fc7e5b996a29141d640859c27 327 Gene3D G3DSA:3.40.50.1980 190 315 4.1E-17 T 26-04-2016 RGE_RS14090 d2eaa88fc7e5b996a29141d640859c27 327 Pfam PF01497 Periplasmic binding protein 75 288 4.9E-28 T 26-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 RGE_RS14090 d2eaa88fc7e5b996a29141d640859c27 327 PANTHER PTHR30535 31 315 1.6E-43 T 26-04-2016 RGE_RS14090 d2eaa88fc7e5b996a29141d640859c27 327 Gene3D G3DSA:3.40.50.1980 72 187 2.2E-30 T 26-04-2016 RGE_RS14090 d2eaa88fc7e5b996a29141d640859c27 327 SUPERFAMILY SSF53807 51 315 1.94E-50 T 26-04-2016 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 SUPERFAMILY SSF50249 1 105 2.48E-32 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 Gene3D G3DSA:2.40.50.140 1 107 3.1E-36 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 564 1.3E-106 T 26-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 PANTHER PTHR22594:SF5 371 577 5.1E-239 T 26-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 PANTHER PTHR22594:SF5 1 297 5.1E-239 T 26-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 1 569 35.555 T 26-04-2016 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 524 538 3.2E-26 T 26-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 221 3.2E-26 T 26-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 191 203 3.2E-26 T 26-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 PRINTS PR01042 Aspartyl-tRNA synthetase signature 480 496 3.2E-26 T 26-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 SUPERFAMILY SSF55261 291 416 3.76E-43 T 26-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 1.8E-15 T 26-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 Gene3D G3DSA:3.30.930.10 413 590 1.3E-108 T 26-04-2016 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 Gene3D G3DSA:3.30.930.10 133 276 1.3E-108 T 26-04-2016 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 588 1.2E-238 T 26-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 Gene3D G3DSA:3.30.1360.30 277 412 4.1E-47 T 26-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 Pfam PF02938 GAD domain 312 407 1.1E-28 T 26-04-2016 IPR029351 GAD domain RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 SUPERFAMILY SSF55681 111 292 2.87E-102 T 26-04-2016 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 SUPERFAMILY SSF55681 430 591 2.87E-102 T 26-04-2016 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 PANTHER PTHR22594 371 577 5.1E-239 T 26-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS05360 19c9ffe13ffe42271955c0591669a6e6 595 PANTHER PTHR22594 1 297 5.1E-239 T 26-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS10220 88fb3e3fe449021efba67f0c8775ff4b 292 Pfam PF04060 Putative Fe-S cluster 47 79 2.4E-13 T 26-04-2016 IPR007202 4Fe-4S domain GO:0051536 RGE_RS10220 88fb3e3fe449021efba67f0c8775ff4b 292 SUPERFAMILY SSF54862 144 233 7.34E-13 T 26-04-2016 RGE_RS10220 88fb3e3fe449021efba67f0c8775ff4b 292 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 174 185 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS10220 88fb3e3fe449021efba67f0c8775ff4b 292 Gene3D G3DSA:3.30.70.20 144 179 2.4E-12 T 26-04-2016 RGE_RS10220 88fb3e3fe449021efba67f0c8775ff4b 292 Pfam PF12838 4Fe-4S dicluster domain 144 187 1.6E-6 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS10220 88fb3e3fe449021efba67f0c8775ff4b 292 Gene3D G3DSA:3.30.70.20 180 226 4.4E-6 T 26-04-2016 RGE_RS10220 88fb3e3fe449021efba67f0c8775ff4b 292 SUPERFAMILY SSF54862 218 270 2.35E-5 T 26-04-2016 RGE_RS00230 aefc3dd53b8e2eca72f328d5d25e6863 121 PANTHER PTHR10168:SF99 15 106 1.2E-23 T 26-04-2016 RGE_RS00230 aefc3dd53b8e2eca72f328d5d25e6863 121 SUPERFAMILY SSF52833 27 120 3.14E-22 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS00230 aefc3dd53b8e2eca72f328d5d25e6863 121 PRINTS PR00160 Glutaredoxin signature 98 111 2.5E-5 T 26-04-2016 IPR014025 Glutaredoxin subgroup RGE_RS00230 aefc3dd53b8e2eca72f328d5d25e6863 121 PRINTS PR00160 Glutaredoxin signature 39 57 2.5E-5 T 26-04-2016 IPR014025 Glutaredoxin subgroup RGE_RS00230 aefc3dd53b8e2eca72f328d5d25e6863 121 PRINTS PR00160 Glutaredoxin signature 84 97 2.5E-5 T 26-04-2016 IPR014025 Glutaredoxin subgroup RGE_RS00230 aefc3dd53b8e2eca72f328d5d25e6863 121 PANTHER PTHR10168 15 106 1.2E-23 T 26-04-2016 RGE_RS00230 aefc3dd53b8e2eca72f328d5d25e6863 121 Gene3D G3DSA:3.40.30.10 25 120 4.7E-18 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS00230 aefc3dd53b8e2eca72f328d5d25e6863 121 Pfam PF00462 Glutaredoxin 44 101 7.8E-7 T 26-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RGE_RS06705 e7d38c222c10be2da43c7bad7dd9505e 316 Gene3D G3DSA:3.40.50.1820 37 313 3.0E-64 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS06705 e7d38c222c10be2da43c7bad7dd9505e 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 137 150 6.9E-16 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS06705 e7d38c222c10be2da43c7bad7dd9505e 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 151 164 6.9E-16 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS06705 e7d38c222c10be2da43c7bad7dd9505e 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 259 273 6.9E-16 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS06705 e7d38c222c10be2da43c7bad7dd9505e 316 PRINTS PR00111 Alpha/beta hydrolase fold signature 88 103 6.9E-16 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS06705 e7d38c222c10be2da43c7bad7dd9505e 316 Pfam PF00561 alpha/beta hydrolase fold 64 302 4.9E-26 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS06705 e7d38c222c10be2da43c7bad7dd9505e 316 PANTHER PTHR10992 1 315 9.7E-49 T 26-04-2016 RGE_RS06705 e7d38c222c10be2da43c7bad7dd9505e 316 SUPERFAMILY SSF53474 35 313 4.32E-62 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS06085 b0e06619ef338854d984196178773407 296 SUPERFAMILY SSF53850 90 293 2.42E-39 T 26-04-2016 RGE_RS06085 b0e06619ef338854d984196178773407 296 PANTHER PTHR30419 1 294 2.0E-76 T 26-04-2016 RGE_RS06085 b0e06619ef338854d984196178773407 296 Gene3D G3DSA:3.40.190.10 92 177 7.0E-21 T 26-04-2016 RGE_RS06085 b0e06619ef338854d984196178773407 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 4.2E-16 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS06085 b0e06619ef338854d984196178773407 296 Pfam PF03466 LysR substrate binding domain 89 293 6.9E-37 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS06085 b0e06619ef338854d984196178773407 296 SUPERFAMILY SSF46785 1 112 6.4E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS06085 b0e06619ef338854d984196178773407 296 Gene3D G3DSA:1.10.10.10 3 88 3.0E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS06085 b0e06619ef338854d984196178773407 296 Gene3D G3DSA:3.40.190.10 178 265 1.6E-17 T 26-04-2016 RGE_RS06085 b0e06619ef338854d984196178773407 296 PANTHER PTHR30419:SF2 1 294 2.0E-76 T 26-04-2016 RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 Pfam PF00107 Zinc-binding dehydrogenase 194 292 7.3E-27 T 26-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 Gene3D G3DSA:3.90.180.10 2 185 4.7E-41 T 26-04-2016 IPR011032 GroES-like RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 SUPERFAMILY SSF51735 157 329 1.18E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 PANTHER PTHR11695 16 88 6.3E-117 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 PANTHER PTHR11695 124 365 6.3E-117 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 147 1.3E-20 T 26-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 SMART SM00829 14 359 1.7E-5 T 26-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 SUPERFAMILY SSF50129 334 362 7.76E-39 T 26-04-2016 IPR011032 GroES-like RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 SUPERFAMILY SSF50129 3 161 7.76E-39 T 26-04-2016 IPR011032 GroES-like RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 PANTHER PTHR11695:SF281 16 88 6.3E-117 T 26-04-2016 RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 PANTHER PTHR11695:SF281 124 365 6.3E-117 T 26-04-2016 RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 Gene3D G3DSA:3.40.50.720 186 297 1.7E-38 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS19340 de48511f0fb38b851d55c2b96779ee20 365 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 26-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RGE_RS12070 f266ff8c43bf56345999e59dbd8e8d24 381 PANTHER PTHR12526 10 374 1.1E-48 T 26-04-2016 RGE_RS12070 f266ff8c43bf56345999e59dbd8e8d24 381 SUPERFAMILY SSF53756 6 365 3.14E-62 T 26-04-2016 RGE_RS12070 f266ff8c43bf56345999e59dbd8e8d24 381 Pfam PF13439 Glycosyltransferase Family 4 9 177 2.3E-19 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS12070 f266ff8c43bf56345999e59dbd8e8d24 381 Pfam PF13692 Glycosyl transferases group 1 203 325 1.3E-18 T 26-04-2016 RGE_RS12070 f266ff8c43bf56345999e59dbd8e8d24 381 Gene3D G3DSA:3.40.50.2000 183 328 4.9E-26 T 26-04-2016 RGE_RS14870 3e6eaa18a5f974fe47ef4d93e7457599 169 PANTHER PTHR30173:SF9 12 168 1.6E-32 T 26-04-2016 RGE_RS14870 3e6eaa18a5f974fe47ef4d93e7457599 169 Gene3D G3DSA:1.10.1740.10 11 80 2.0E-10 T 26-04-2016 RGE_RS14870 3e6eaa18a5f974fe47ef4d93e7457599 169 SUPERFAMILY SSF88946 12 100 2.51E-11 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14870 3e6eaa18a5f974fe47ef4d93e7457599 169 Pfam PF04542 Sigma-70 region 2 15 80 5.6E-8 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14870 3e6eaa18a5f974fe47ef4d93e7457599 169 Pfam PF08281 Sigma-70, region 4 111 163 9.3E-16 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14870 3e6eaa18a5f974fe47ef4d93e7457599 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 162 5.1E-19 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14870 3e6eaa18a5f974fe47ef4d93e7457599 169 SUPERFAMILY SSF88659 91 168 1.29E-14 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14870 3e6eaa18a5f974fe47ef4d93e7457599 169 PANTHER PTHR30173 12 168 1.6E-32 T 26-04-2016 RGE_RS14870 3e6eaa18a5f974fe47ef4d93e7457599 169 Gene3D G3DSA:1.10.10.10 109 168 2.6E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 4 244 5.4E-114 T 26-04-2016 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|UniPathway: UPA00917 RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 Gene3D G3DSA:3.40.50.720 2 244 1.2E-83 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 9.5E-15 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 9.5E-15 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 9.5E-15 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PANTHER PTHR24322:SF328 8 136 7.0E-55 T 26-04-2016 RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PANTHER PTHR24322:SF328 152 184 7.0E-55 T 26-04-2016 RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 188 9.7E-5 T 26-04-2016 RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 4.5E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 4.5E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 4.5E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 4.5E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 4.5E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 4.5E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 Pfam PF00106 short chain dehydrogenase 4 195 2.3E-62 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PANTHER PTHR24322 8 136 7.0E-55 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 PANTHER PTHR24322 152 184 7.0E-55 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 SUPERFAMILY SSF51735 3 244 1.94E-79 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11580 6ca0ae46a309981af4f49ba24f36b19a 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS14465 869477f4b5fa86409329ad36cfe5d417 415 Gene3D G3DSA:1.10.10.10 112 170 1.6E-12 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14465 869477f4b5fa86409329ad36cfe5d417 415 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 170 7.6E-12 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14465 869477f4b5fa86409329ad36cfe5d417 415 PANTHER PTHR30173 1 387 1.9E-138 T 26-04-2016 RGE_RS14465 869477f4b5fa86409329ad36cfe5d417 415 Pfam PF08281 Sigma-70, region 4 118 169 8.2E-9 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14465 869477f4b5fa86409329ad36cfe5d417 415 Gene3D G3DSA:1.10.1740.10 4 74 1.4E-9 T 26-04-2016 RGE_RS14465 869477f4b5fa86409329ad36cfe5d417 415 Pfam PF04542 Sigma-70 region 2 14 73 7.5E-9 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14465 869477f4b5fa86409329ad36cfe5d417 415 SUPERFAMILY SSF88659 110 170 4.36E-10 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14465 869477f4b5fa86409329ad36cfe5d417 415 PANTHER PTHR30173:SF15 1 387 1.9E-138 T 26-04-2016 RGE_RS14465 869477f4b5fa86409329ad36cfe5d417 415 SUPERFAMILY SSF88946 4 79 1.37E-11 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS07555 8dbe09157e6630783964edd5fa03b855 400 SUPERFAMILY SSF53383 3 399 1.36E-120 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS07555 8dbe09157e6630783964edd5fa03b855 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 247 260 - T 26-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RGE_RS07555 8dbe09157e6630783964edd5fa03b855 400 PRINTS PR00799 Aspartate aminotransferase signature 179 198 2.4E-38 T 26-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RGE_RS07555 8dbe09157e6630783964edd5fa03b855 400 PRINTS PR00799 Aspartate aminotransferase signature 210 222 2.4E-38 T 26-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RGE_RS07555 8dbe09157e6630783964edd5fa03b855 400 PRINTS PR00799 Aspartate aminotransferase signature 345 363 2.4E-38 T 26-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RGE_RS07555 8dbe09157e6630783964edd5fa03b855 400 PRINTS PR00799 Aspartate aminotransferase signature 277 302 2.4E-38 T 26-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RGE_RS07555 8dbe09157e6630783964edd5fa03b855 400 Pfam PF00155 Aminotransferase class I and II 32 396 1.5E-84 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS07555 8dbe09157e6630783964edd5fa03b855 400 PANTHER PTHR11879 1 399 3.2E-215 T 26-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RGE_RS07555 8dbe09157e6630783964edd5fa03b855 400 Gene3D G3DSA:3.40.640.10 49 319 1.1E-105 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Pfam PF00072 Response regulator receiver domain 994 1110 2.1E-18 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Pfam PF00072 Response regulator receiver domain 1144 1251 4.9E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Pfam PF08448 PAS fold 334 442 7.3E-20 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Pfam PF08448 PAS fold 458 576 3.6E-12 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Pfam PF08448 PAS fold 618 725 1.4E-16 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SUPERFAMILY SSF55785 438 572 2.84E-23 T 26-04-2016 IPR000014 PAS domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 PANTHER PTHR24423:SF486 609 990 1.2E-176 T 26-04-2016 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 PANTHER PTHR24423:SF486 1140 1257 1.2E-176 T 26-04-2016 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Gene3D G3DSA:3.30.450.20 444 572 5.0E-25 T 26-04-2016 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SMART SM00448 1141 1252 1.2E-30 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SMART SM00448 991 1109 9.2E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Gene3D G3DSA:3.40.50.2300 990 1116 1.9E-26 T 26-04-2016 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SUPERFAMILY SSF47226 1284 1363 4.58E-14 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SUPERFAMILY SSF47226 1235 1248 4.58E-14 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Gene3D G3DSA:1.10.287.130 742 811 1.4E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 861 973 3.5E-23 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SUPERFAMILY SSF55874 804 972 2.88E-41 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SUPERFAMILY SSF52172 989 1115 1.35E-26 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Gene3D G3DSA:1.20.120.160 1296 1377 1.2E-11 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 609 730 3.4E-11 T 26-04-2016 IPR000014 PAS domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 327 447 9.3E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 448 581 1.3E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SMART SM00086 397 440 26.0 T 26-04-2016 IPR001610 PAC motif RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SMART SM00086 681 723 20.0 T 26-04-2016 IPR001610 PAC motif RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SMART SM00086 531 574 3.6E-5 T 26-04-2016 IPR001610 PAC motif RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 PANTHER PTHR24423:SF486 132 589 1.2E-176 T 26-04-2016 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Pfam PF00512 His Kinase A (phospho-acceptor) domain 750 815 5.2E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SUPERFAMILY SSF52172 1142 1258 5.41E-36 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SUPERFAMILY SSF55785 598 721 3.07E-19 T 26-04-2016 IPR000014 PAS domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SMART SM00091 452 518 4.1E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SMART SM00091 611 677 2.1E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SMART SM00091 327 394 1.3E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 PANTHER PTHR24423 132 589 1.2E-176 T 26-04-2016 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 PANTHER PTHR24423 1140 1257 1.2E-176 T 26-04-2016 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 PANTHER PTHR24423 609 990 1.2E-176 T 26-04-2016 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SUPERFAMILY SSF55785 318 438 2.44E-22 T 26-04-2016 IPR000014 PAS domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Gene3D G3DSA:3.30.565.10 816 972 8.4E-42 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SMART SM00387 861 977 4.4E-34 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SUPERFAMILY SSF47384 733 816 1.37E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Gene3D G3DSA:3.30.450.20 313 438 7.4E-23 T 26-04-2016 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Gene3D G3DSA:3.40.50.2300 1143 1263 1.2E-37 T 26-04-2016 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 PRINTS PR00344 Bacterial sensor protein C-terminal signature 902 916 2.9E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 PRINTS PR00344 Bacterial sensor protein C-terminal signature 937 955 2.9E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 PRINTS PR00344 Bacterial sensor protein C-terminal signature 961 974 2.9E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 PRINTS PR00344 Bacterial sensor protein C-terminal signature 920 930 2.9E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Gene3D G3DSA:3.30.450.20 597 721 5.1E-17 T 26-04-2016 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 SMART SM00388 750 815 7.8E-23 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS06875 a4ce6ae8a5c7925e8b4ea9e401957c2b 1395 Pfam PF01627 Hpt domain 1325 1386 1.4E-6 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS00095 f56c48593a5d8918bc31eaea4c192851 313 Pfam PF00561 alpha/beta hydrolase fold 38 162 3.5E-14 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS00095 f56c48593a5d8918bc31eaea4c192851 313 PANTHER PTHR11440 30 294 3.8E-18 T 26-04-2016 RGE_RS00095 f56c48593a5d8918bc31eaea4c192851 313 Gene3D G3DSA:3.40.50.1820 30 312 2.9E-55 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00095 f56c48593a5d8918bc31eaea4c192851 313 SUPERFAMILY SSF53474 33 309 4.94E-45 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS05085 1a7156656a9a12f41f7a3e7aa083a871 115 SUPERFAMILY SSF54197 1 110 1.84E-41 T 26-04-2016 IPR011146 HIT-like domain GO:0003824 RGE_RS05085 1a7156656a9a12f41f7a3e7aa083a871 115 PRINTS PR00332 Histidine triad family signature 96 106 3.9E-19 T 26-04-2016 IPR001310 Histidine triad (HIT) protein RGE_RS05085 1a7156656a9a12f41f7a3e7aa083a871 115 PRINTS PR00332 Histidine triad family signature 8 24 3.9E-19 T 26-04-2016 IPR001310 Histidine triad (HIT) protein RGE_RS05085 1a7156656a9a12f41f7a3e7aa083a871 115 PRINTS PR00332 Histidine triad family signature 29 47 3.9E-19 T 26-04-2016 IPR001310 Histidine triad (HIT) protein RGE_RS05085 1a7156656a9a12f41f7a3e7aa083a871 115 Pfam PF01230 HIT domain 15 108 2.5E-27 T 26-04-2016 IPR001310 Histidine triad (HIT) protein RGE_RS05085 1a7156656a9a12f41f7a3e7aa083a871 115 ProSitePatterns PS00892 HIT domain signature. 89 107 - T 26-04-2016 IPR019808 Histidine triad, conserved site RGE_RS05085 1a7156656a9a12f41f7a3e7aa083a871 115 PANTHER PTHR23089 4 110 4.5E-48 T 26-04-2016 IPR001310 Histidine triad (HIT) protein RGE_RS05085 1a7156656a9a12f41f7a3e7aa083a871 115 Gene3D G3DSA:3.30.428.10 2 110 3.1E-42 T 26-04-2016 IPR011146 HIT-like domain GO:0003824 RGE_RS02025 2dfae95748ecb74b41d591292407f431 373 PANTHER PTHR18964:SF70 5 371 3.8E-100 T 26-04-2016 RGE_RS02025 2dfae95748ecb74b41d591292407f431 373 Gene3D G3DSA:3.40.50.2000 5 213 2.2E-70 T 26-04-2016 RGE_RS02025 2dfae95748ecb74b41d591292407f431 373 Gene3D G3DSA:3.40.50.2000 214 368 3.9E-49 T 26-04-2016 RGE_RS02025 2dfae95748ecb74b41d591292407f431 373 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 30 368 3.6E-101 T 26-04-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain RGE_RS02025 2dfae95748ecb74b41d591292407f431 373 PANTHER PTHR18964 5 371 3.8E-100 T 26-04-2016 RGE_RS02025 2dfae95748ecb74b41d591292407f431 373 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 5 367 1.5E-90 T 26-04-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 RGE_RS02025 2dfae95748ecb74b41d591292407f431 373 SUPERFAMILY SSF53756 5 371 5.76E-107 T 26-04-2016 RGE_RS07775 2800aec4c813dfbb3ed246f0e0870e8c 268 Gene3D G3DSA:3.40.50.1820 21 267 5.9E-46 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07775 2800aec4c813dfbb3ed246f0e0870e8c 268 Pfam PF12697 Alpha/beta hydrolase family 26 261 3.1E-20 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS07775 2800aec4c813dfbb3ed246f0e0870e8c 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 215 229 8.8E-10 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS07775 2800aec4c813dfbb3ed246f0e0870e8c 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 8.8E-10 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS07775 2800aec4c813dfbb3ed246f0e0870e8c 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 50 65 8.8E-10 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS07775 2800aec4c813dfbb3ed246f0e0870e8c 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 8.8E-10 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS07775 2800aec4c813dfbb3ed246f0e0870e8c 268 SUPERFAMILY SSF53474 6 267 3.81E-46 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07775 2800aec4c813dfbb3ed246f0e0870e8c 268 PANTHER PTHR10992 2 268 6.8E-38 T 26-04-2016 RGE_RS05370 364dad1d5030ae9345aa68f82aafa91a 373 SUPERFAMILY SSF51569 29 370 3.66E-133 T 26-04-2016 RGE_RS05370 364dad1d5030ae9345aa68f82aafa91a 373 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 28 371 2.2E-152 T 26-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RGE_RS05370 364dad1d5030ae9345aa68f82aafa91a 373 Gene3D G3DSA:3.20.20.70 31 372 2.6E-147 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS05370 364dad1d5030ae9345aa68f82aafa91a 373 Pfam PF00793 DAHP synthetase I family 66 358 8.5E-97 T 26-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RGE_RS05370 364dad1d5030ae9345aa68f82aafa91a 373 PIRSF PIRSF001361 17 373 2.0E-154 T 26-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RGE_RS05370 364dad1d5030ae9345aa68f82aafa91a 373 PANTHER PTHR21225 3 373 6.5E-217 T 26-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RGE_RS13550 3cbac1d7b24c67a03a5a6f140471ed3f 455 PANTHER PTHR30203 7 453 4.6E-102 T 26-04-2016 RGE_RS13550 3cbac1d7b24c67a03a5a6f140471ed3f 455 Gene3D G3DSA:1.20.1600.10 49 453 4.1E-82 T 26-04-2016 RGE_RS13550 3cbac1d7b24c67a03a5a6f140471ed3f 455 PANTHER PTHR30203:SF13 7 453 4.6E-102 T 26-04-2016 RGE_RS13550 3cbac1d7b24c67a03a5a6f140471ed3f 455 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 10 453 4.4E-79 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS13550 3cbac1d7b24c67a03a5a6f140471ed3f 455 SUPERFAMILY SSF56954 4 453 1.06E-83 T 26-04-2016 RGE_RS13550 3cbac1d7b24c67a03a5a6f140471ed3f 455 Pfam PF02321 Outer membrane efflux protein 275 452 2.1E-17 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS13550 3cbac1d7b24c67a03a5a6f140471ed3f 455 Pfam PF02321 Outer membrane efflux protein 60 242 4.4E-20 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 SUPERFAMILY SSF51695 165 443 6.02E-59 T 26-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 SUPERFAMILY SSF51695 44 113 6.02E-59 T 26-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 50 439 2.3E-35 T 26-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 PANTHER PTHR23344 384 442 1.3E-77 T 26-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 PANTHER PTHR23344 164 304 1.3E-77 T 26-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 PANTHER PTHR23344 328 365 1.3E-77 T 26-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 PANTHER PTHR23344 17 125 1.3E-77 T 26-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 PANTHER PTHR23344:SF7 384 442 1.3E-77 T 26-04-2016 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 PANTHER PTHR23344:SF7 164 304 1.3E-77 T 26-04-2016 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 PANTHER PTHR23344:SF7 328 365 1.3E-77 T 26-04-2016 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 PANTHER PTHR23344:SF7 17 125 1.3E-77 T 26-04-2016 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 Gene3D G3DSA:3.20.20.190 165 443 1.6E-81 T 26-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RGE_RS04825 ca1dcf1c8e5bcf9fe65c22aba6e44c8d 454 Gene3D G3DSA:3.20.20.190 45 119 1.6E-81 T 26-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RGE_RS18230 08427369964871b55b5c3a5f0abecbc7 86 PANTHER PTHR33404 1 86 2.2E-24 T 26-04-2016 RGE_RS18230 08427369964871b55b5c3a5f0abecbc7 86 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 2.3E-30 T 26-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 RGE_RS18230 08427369964871b55b5c3a5f0abecbc7 86 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 3.0E-25 T 26-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 RGE_RS18230 08427369964871b55b5c3a5f0abecbc7 86 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 84 18.437 T 26-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 RGE_RS18230 08427369964871b55b5c3a5f0abecbc7 86 SUPERFAMILY SSF55229 34 83 1.44E-14 T 26-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 RGE_RS18230 08427369964871b55b5c3a5f0abecbc7 86 Gene3D G3DSA:3.30.1070.10 36 83 2.5E-20 T 26-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 Pfam PF00873 AcrB/AcrD/AcrF family 5 1005 6.5E-231 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 SUPERFAMILY SSF82693 41 133 9.68E-22 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 SUPERFAMILY SSF82714 183 264 1.44E-11 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 SUPERFAMILY SSF82693 268 313 7.85E-15 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 SUPERFAMILY SSF82693 138 182 7.85E-15 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 4.1E-52 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 PRINTS PR00702 Acriflavin resistance protein family signature 532 549 4.1E-52 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 4.1E-52 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 4.1E-52 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 4.1E-52 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 4.1E-52 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 4.1E-52 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 4.1E-52 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 SUPERFAMILY SSF82714 698 785 2.22E-11 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 SUPERFAMILY SSF82866 292 489 2.62E-43 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 Gene3D G3DSA:3.30.2090.10 698 788 1.1E-10 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 Gene3D G3DSA:3.30.70.1430 551 648 1.8E-11 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 PANTHER PTHR32063 1 1026 0.0 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 Gene3D G3DSA:3.30.70.1320 141 179 1.4E-13 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 Gene3D G3DSA:3.30.70.1320 270 300 1.4E-13 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 PANTHER PTHR32063:SF20 1 1026 0.0 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 SUPERFAMILY SSF82866 784 1010 1.31E-45 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 Gene3D G3DSA:1.10.3850.10 791 1007 2.8E-53 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 Gene3D G3DSA:3.30.70.1430 41 140 7.6E-26 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 SUPERFAMILY SSF82693 545 648 7.85E-12 T 26-04-2016 RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 Gene3D G3DSA:3.30.2090.10 183 265 1.2E-11 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS14480 4e15abd4c359a81aece99e2c4d7f3d24 1040 Gene3D G3DSA:1.20.1640.10 301 495 8.1E-50 T 26-04-2016 RGE_RS12805 596b3f3cb990add81c18d4e39d8af995 431 SUPERFAMILY SSF54368 2 95 6.15E-15 T 26-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS12805 596b3f3cb990add81c18d4e39d8af995 431 Gene3D G3DSA:3.30.590.10 103 418 6.1E-92 T 26-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RGE_RS12805 596b3f3cb990add81c18d4e39d8af995 431 Pfam PF00120 Glutamine synthetase, catalytic domain 100 427 6.4E-92 T 26-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS12805 596b3f3cb990add81c18d4e39d8af995 431 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 230 245 - T 26-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS12805 596b3f3cb990add81c18d4e39d8af995 431 Gene3D G3DSA:3.10.20.70 5 102 2.3E-12 T 26-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS12805 596b3f3cb990add81c18d4e39d8af995 431 PANTHER PTHR20852:SF7 5 431 2.4E-106 T 26-04-2016 RGE_RS12805 596b3f3cb990add81c18d4e39d8af995 431 SUPERFAMILY SSF55931 100 427 7.95E-95 T 26-04-2016 RGE_RS12805 596b3f3cb990add81c18d4e39d8af995 431 SMART SM01230 99 341 3.6E-92 T 26-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS12805 596b3f3cb990add81c18d4e39d8af995 431 PANTHER PTHR20852 5 431 2.4E-106 T 26-04-2016 RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 454 9.7E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 491 9.7E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 510 9.7E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 SUPERFAMILY SSF55785 61 175 1.57E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 PANTHER PTHR24423 59 511 5.5E-100 T 26-04-2016 RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 SUPERFAMILY SSF55874 358 509 1.19E-34 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 Gene3D G3DSA:3.30.450.20 60 174 1.0E-5 T 26-04-2016 RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 SMART SM00388 291 359 3.7E-5 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 Pfam PF00512 His Kinase A (phospho-acceptor) domain 298 357 4.3E-9 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 401 510 2.2E-18 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 SMART SM00387 401 511 3.4E-24 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 SUPERFAMILY SSF47384 295 358 1.45E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 Gene3D G3DSA:3.30.565.10 359 509 1.3E-32 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 PANTHER PTHR24423:SF383 59 511 5.5E-100 T 26-04-2016 RGE_RS23125 bb822cdb2c3b5ddce4d7f0b5990d12ac 511 Gene3D G3DSA:1.10.287.130 298 355 5.5E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 1.6E-12 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 1.6E-12 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 1.6E-12 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 SMART SM00344 1 110 2.0E-38 T 26-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 Gene3D G3DSA:1.10.10.10 2 53 4.9E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 4.0E-17 T 26-04-2016 RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 26-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 PANTHER PTHR30154:SF17 1 149 7.2E-70 T 26-04-2016 RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 Gene3D G3DSA:3.30.70.920 54 137 1.8E-29 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 SUPERFAMILY SSF46785 1 91 6.04E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 PANTHER PTHR30154 1 149 7.2E-70 T 26-04-2016 RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 SUPERFAMILY SSF54909 62 149 1.88E-19 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS14620 f1dfca7b7b976ac60d5ae5f66ab88a77 153 Pfam PF01037 Lrp/AsnC ligand binding domain 67 140 7.8E-19 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS05025 e3b36b080cccc68c8c1dd30d324cf34e 208 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 31 152 2.5E-47 T 26-04-2016 IPR008769 Poly granule associated RGE_RS05025 e3b36b080cccc68c8c1dd30d324cf34e 208 PANTHER PTHR38664:SF1 11 173 1.4E-19 T 26-04-2016 RGE_RS05025 e3b36b080cccc68c8c1dd30d324cf34e 208 PANTHER PTHR38664 11 173 1.4E-19 T 26-04-2016 RGE_RS05025 e3b36b080cccc68c8c1dd30d324cf34e 208 TIGRFAM TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein 38 153 4.1E-31 T 26-04-2016 IPR008769 Poly granule associated RGE_RS14605 509f9b317dd229e8a75dbed1d0656476 169 SUPERFAMILY SSF51182 34 127 1.09E-20 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS14605 509f9b317dd229e8a75dbed1d0656476 169 Gene3D G3DSA:2.60.120.10 39 155 5.9E-21 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS14605 509f9b317dd229e8a75dbed1d0656476 169 ProDom PD080544 SYNTHASE 4.2.1.- LYASE L-ECTOINE DEHYDRATASE N-ACETYLDIAMINOBUTYRATE ECTOINE ENZYME SYNTHASE:ECTOINE ECTC 43 92 0.006 T 26-04-2016 IPR010462 Ectoine synthase GO:0019491|GO:0033990 KEGG: 00260+4.2.1.108|KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00067 RGE_RS14605 509f9b317dd229e8a75dbed1d0656476 169 PANTHER PTHR35848:SF2 21 117 2.9E-15 T 26-04-2016 RGE_RS14605 509f9b317dd229e8a75dbed1d0656476 169 Pfam PF07883 Cupin domain 47 117 1.4E-17 T 26-04-2016 IPR013096 Cupin 2, conserved barrel RGE_RS14605 509f9b317dd229e8a75dbed1d0656476 169 PANTHER PTHR35848 21 117 2.9E-15 T 26-04-2016 RGE_RS02245 fb2b74929076a9212d0aa117b70a6e81 392 Gene3D G3DSA:3.10.350.10 66 115 1.9E-6 T 26-04-2016 IPR018392 LysM domain RGE_RS02245 fb2b74929076a9212d0aa117b70a6e81 392 Pfam PF01476 LysM domain 68 114 1.0E-10 T 26-04-2016 IPR018392 LysM domain RGE_RS02245 fb2b74929076a9212d0aa117b70a6e81 392 SMART SM00257 67 116 7.0E-4 T 26-04-2016 IPR018392 LysM domain RGE_RS02245 fb2b74929076a9212d0aa117b70a6e81 392 SUPERFAMILY SSF54106 67 115 5.62E-6 T 26-04-2016 IPR018392 LysM domain RGE_RS02245 fb2b74929076a9212d0aa117b70a6e81 392 PANTHER PTHR34700:SF2 59 389 3.4E-36 T 26-04-2016 RGE_RS02245 fb2b74929076a9212d0aa117b70a6e81 392 PANTHER PTHR34700 59 389 3.4E-36 T 26-04-2016 RGE_RS11880 e9af947c47462911416b172e5289650e 391 SUPERFAMILY SSF53901 1 265 2.03E-69 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11880 e9af947c47462911416b172e5289650e 391 PANTHER PTHR18919:SF14 1 391 8.2E-204 T 26-04-2016 RGE_RS11880 e9af947c47462911416b172e5289650e 391 Gene3D G3DSA:3.40.47.10 4 125 2.3E-60 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11880 e9af947c47462911416b172e5289650e 391 Gene3D G3DSA:3.40.47.10 185 274 2.3E-60 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11880 e9af947c47462911416b172e5289650e 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 2.5E-126 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS11880 e9af947c47462911416b172e5289650e 391 PANTHER PTHR18919 1 391 8.2E-204 T 26-04-2016 RGE_RS11880 e9af947c47462911416b172e5289650e 391 Gene3D G3DSA:3.40.47.10 143 184 1.3E-60 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11880 e9af947c47462911416b172e5289650e 391 Gene3D G3DSA:3.40.47.10 275 390 1.3E-60 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11880 e9af947c47462911416b172e5289650e 391 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 26-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RGE_RS11880 e9af947c47462911416b172e5289650e 391 SUPERFAMILY SSF53901 269 390 1.44E-42 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11880 e9af947c47462911416b172e5289650e 391 Pfam PF00108 Thiolase, N-terminal domain 5 260 2.1E-62 T 26-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RGE_RS11880 e9af947c47462911416b172e5289650e 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 26-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 RGE_RS11880 e9af947c47462911416b172e5289650e 391 PIRSF PIRSF000429 1 391 1.4E-118 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS11880 e9af947c47462911416b172e5289650e 391 Pfam PF02803 Thiolase, C-terminal domain 268 389 3.1E-43 T 26-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RGE_RS17505 d4d0deba48636da4ebcedd6bfd9e03ea 365 PANTHER PTHR10029:SF4 4 363 5.3E-81 T 26-04-2016 RGE_RS17505 d4d0deba48636da4ebcedd6bfd9e03ea 365 PANTHER PTHR10029 4 363 5.3E-81 T 26-04-2016 RGE_RS02560 4b9ced193b31b8f0ef2a3222399fa49b 616 SUPERFAMILY SSF53697 254 616 1.21E-112 T 26-04-2016 RGE_RS02560 4b9ced193b31b8f0ef2a3222399fa49b 616 Pfam PF13522 Glutamine amidotransferase domain 65 197 3.1E-22 T 26-04-2016 RGE_RS02560 4b9ced193b31b8f0ef2a3222399fa49b 616 Gene3D G3DSA:3.40.50.10490 450 616 3.4E-62 T 26-04-2016 RGE_RS02560 4b9ced193b31b8f0ef2a3222399fa49b 616 Gene3D G3DSA:3.40.50.10490 253 449 5.3E-72 T 26-04-2016 RGE_RS02560 4b9ced193b31b8f0ef2a3222399fa49b 616 Gene3D G3DSA:3.60.20.10 2 234 9.9E-77 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS02560 4b9ced193b31b8f0ef2a3222399fa49b 616 PANTHER PTHR10937:SF0 1 616 1.4E-303 T 26-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 RGE_RS02560 4b9ced193b31b8f0ef2a3222399fa49b 616 PANTHER PTHR10937 1 616 1.4E-303 T 26-04-2016 RGE_RS02560 4b9ced193b31b8f0ef2a3222399fa49b 616 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 616 39.118 T 26-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 RGE_RS02560 4b9ced193b31b8f0ef2a3222399fa49b 616 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 616 7.6E-244 T 26-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 RGE_RS02560 4b9ced193b31b8f0ef2a3222399fa49b 616 Pfam PF01380 SIS domain 470 597 3.8E-24 T 26-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RGE_RS02560 4b9ced193b31b8f0ef2a3222399fa49b 616 Pfam PF01380 SIS domain 297 424 1.1E-27 T 26-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RGE_RS02560 4b9ced193b31b8f0ef2a3222399fa49b 616 SUPERFAMILY SSF56235 2 231 1.54E-71 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS02005 24c2d0436cd121fb423213599b18f99f 528 Pfam PF02706 Chain length determinant protein 11 149 7.9E-13 T 26-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 RGE_RS02005 24c2d0436cd121fb423213599b18f99f 528 PANTHER PTHR32309:SF13 9 494 1.4E-50 T 26-04-2016 RGE_RS02005 24c2d0436cd121fb423213599b18f99f 528 TIGRFAM TIGR03007 pepcterm_ChnLen: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily 8 515 1.3E-162 T 26-04-2016 IPR014345 PEP-CTERM locus polysaccharide chain length determinant RGE_RS02005 24c2d0436cd121fb423213599b18f99f 528 Pfam PF13807 G-rich domain on putative tyrosine kinase 375 455 9.0E-9 T 26-04-2016 IPR032807 Tyrosine kinase, G-rich domain RGE_RS02005 24c2d0436cd121fb423213599b18f99f 528 PANTHER PTHR32309 9 494 1.4E-50 T 26-04-2016 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 Gene3D G3DSA:3.40.47.10 278 392 5.0E-73 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 Gene3D G3DSA:3.40.47.10 143 194 5.0E-73 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 Pfam PF02803 Thiolase, C-terminal domain 272 393 6.4E-53 T 26-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 SUPERFAMILY SSF53901 272 393 1.04E-46 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 392 1.9E-148 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 SUPERFAMILY SSF53901 4 271 1.92E-86 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 26-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 PANTHER PTHR18919:SF95 1 393 8.6E-228 T 26-04-2016 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 PANTHER PTHR18919 1 393 8.6E-228 T 26-04-2016 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 ProSitePatterns PS00099 Thiolases active site. 375 388 - T 26-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 PIRSF PIRSF000429 1 393 8.9E-131 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 ProSitePatterns PS00737 Thiolases signature 2. 340 356 - T 26-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 Gene3D G3DSA:3.40.47.10 195 277 4.2E-76 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 Gene3D G3DSA:3.40.47.10 4 124 4.2E-76 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11575 9348a0aa0ca9f42b7abb64e00dcea136 393 Pfam PF00108 Thiolase, N-terminal domain 5 263 1.0E-105 T 26-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RGE_RS22050 60dc1a01816c5ad797e40e9b97bc95fb 177 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 1 141 24.474 T 26-04-2016 IPR026592 Outer membrane protein assembly factor BamE RGE_RS22050 60dc1a01816c5ad797e40e9b97bc95fb 177 Pfam PF04355 SmpA / OmlA family 41 109 2.4E-24 T 26-04-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 RGE_RS22050 60dc1a01816c5ad797e40e9b97bc95fb 177 PANTHER PTHR37482 34 169 3.1E-23 T 26-04-2016 RGE_RS22050 60dc1a01816c5ad797e40e9b97bc95fb 177 PANTHER PTHR37482:SF1 34 169 3.1E-23 T 26-04-2016 RGE_RS05020 5254be13547c96586f6279977220b639 409 Pfam PF01734 Patatin-like phospholipase 11 226 1.4E-23 T 26-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RGE_RS05020 5254be13547c96586f6279977220b639 409 SUPERFAMILY SSF52151 6 86 2.88E-41 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS05020 5254be13547c96586f6279977220b639 409 SUPERFAMILY SSF52151 130 344 2.88E-41 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS05020 5254be13547c96586f6279977220b639 409 PANTHER PTHR14226 8 99 4.0E-22 T 26-04-2016 RGE_RS05020 5254be13547c96586f6279977220b639 409 PANTHER PTHR14226 135 220 4.0E-22 T 26-04-2016 RGE_RS05020 5254be13547c96586f6279977220b639 409 Gene3D G3DSA:3.40.1090.10 124 220 1.1E-10 T 26-04-2016 RGE_RS05020 5254be13547c96586f6279977220b639 409 Gene3D G3DSA:3.40.1090.10 11 84 1.1E-10 T 26-04-2016 RGE_RS03790 ca64eef54bcaa0a3f41acc496168e1bf 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 329 7.0E-31 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS03790 ca64eef54bcaa0a3f41acc496168e1bf 354 PANTHER PTHR30482:SF5 1 351 6.4E-80 T 26-04-2016 RGE_RS03790 ca64eef54bcaa0a3f41acc496168e1bf 354 PANTHER PTHR30482 1 351 6.4E-80 T 26-04-2016 RGE_RS02850 ee1fef986404110e54f410fee4183b5f 108 SMART SM00528 64 107 8.9E-10 T 26-04-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RGE_RS02850 ee1fef986404110e54f410fee4183b5f 108 Pfam PF00816 H-NS histone family 15 101 5.7E-22 T 26-04-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 RGE_RS02850 ee1fef986404110e54f410fee4183b5f 108 SUPERFAMILY SSF81273 70 107 1.88E-8 T 26-04-2016 RGE_RS02850 ee1fef986404110e54f410fee4183b5f 108 Gene3D G3DSA:4.10.430.10 66 107 2.3E-14 T 26-04-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RGE_RS00685 e91bf2f1ce6929e9328925df92d49412 483 PANTHER PTHR13078 31 174 4.3E-24 T 26-04-2016 RGE_RS00685 e91bf2f1ce6929e9328925df92d49412 483 SUPERFAMILY SSF54637 27 165 1.66E-36 T 26-04-2016 IPR029069 HotDog domain RGE_RS00685 e91bf2f1ce6929e9328925df92d49412 483 Pfam PF01515 Phosphate acetyl/butaryl transferase 257 473 1.9E-42 T 26-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RGE_RS00685 e91bf2f1ce6929e9328925df92d49412 483 SUPERFAMILY SSF53659 188 478 4.11E-65 T 26-04-2016 RGE_RS00685 e91bf2f1ce6929e9328925df92d49412 483 Gene3D G3DSA:3.10.129.10 31 162 6.3E-39 T 26-04-2016 IPR029069 HotDog domain RGE_RS00685 e91bf2f1ce6929e9328925df92d49412 483 Gene3D G3DSA:3.40.50.10750 292 450 9.7E-47 T 26-04-2016 RGE_RS00685 e91bf2f1ce6929e9328925df92d49412 483 Pfam PF01575 MaoC like domain 41 134 3.9E-16 T 26-04-2016 IPR002539 MaoC-like domain RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 PANTHER PTHR24423:SF383 330 580 1.2E-96 T 26-04-2016 RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 SUPERFAMILY SSF47384 335 417 2.75E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 Gene3D G3DSA:3.30.565.10 418 571 1.3E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 PANTHER PTHR24423 330 580 1.2E-96 T 26-04-2016 RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 SUPERFAMILY SSF55874 418 571 6.55E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 Gene3D G3DSA:1.10.287.130 343 414 6.8E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 527 8.8E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 PRINTS PR00344 Bacterial sensor protein C-terminal signature 556 569 8.8E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 PRINTS PR00344 Bacterial sensor protein C-terminal signature 499 513 8.8E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 PRINTS PR00344 Bacterial sensor protein C-terminal signature 532 550 8.8E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 SMART SM00387 460 572 2.4E-29 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 Pfam PF00512 His Kinase A (phospho-acceptor) domain 352 416 5.4E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 SMART SM00388 351 419 6.1E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS19895 bbb6f8832fe6ae24db72d08cf8600788 580 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 460 571 6.8E-18 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17145 a9550837d1aceac3ebb61e48c1600ee7 482 Pfam PF01554 MatE 271 432 6.4E-25 T 26-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RGE_RS17145 a9550837d1aceac3ebb61e48c1600ee7 482 Pfam PF01554 MatE 42 198 4.4E-23 T 26-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RGE_RS17145 a9550837d1aceac3ebb61e48c1600ee7 482 TIGRFAM TIGR00797 matE: MATE efflux family protein 42 440 1.1E-62 T 26-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RGE_RS17145 a9550837d1aceac3ebb61e48c1600ee7 482 PANTHER PTHR11206 8 479 7.5E-88 T 26-04-2016 RGE_RS17145 a9550837d1aceac3ebb61e48c1600ee7 482 PANTHER PTHR11206:SF153 8 479 7.5E-88 T 26-04-2016 RGE_RS02475 78d5ef3570940a925bf3040cc3169a28 263 Pfam PF08282 haloacid dehalogenase-like hydrolase 18 80 6.5E-7 T 26-04-2016 IPR023214 HAD-like domain RGE_RS02475 78d5ef3570940a925bf3040cc3169a28 263 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 18 224 6.7E-20 T 26-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 RGE_RS02475 78d5ef3570940a925bf3040cc3169a28 263 Gene3D G3DSA:3.40.50.1000 165 252 2.4E-15 T 26-04-2016 IPR023214 HAD-like domain RGE_RS02475 78d5ef3570940a925bf3040cc3169a28 263 Gene3D G3DSA:3.40.50.1000 18 94 2.4E-15 T 26-04-2016 IPR023214 HAD-like domain RGE_RS02475 78d5ef3570940a925bf3040cc3169a28 263 SUPERFAMILY SSF56784 18 256 2.95E-23 T 26-04-2016 IPR023214 HAD-like domain RGE_RS16325 eaaef7a9ec5a882d60f187326df08ed7 460 PANTHER PTHR23538 3 460 4.1E-72 T 26-04-2016 RGE_RS16325 eaaef7a9ec5a882d60f187326df08ed7 460 SUPERFAMILY SSF103473 17 449 1.31E-26 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS16325 eaaef7a9ec5a882d60f187326df08ed7 460 Pfam PF03209 PUCC protein 36 441 4.6E-138 T 26-04-2016 IPR004896 PucC-related RGE_RS16325 eaaef7a9ec5a882d60f187326df08ed7 460 PIRSF PIRSF016565 1 456 4.3E-121 T 26-04-2016 IPR026036 PucC protein RGE_RS16325 eaaef7a9ec5a882d60f187326df08ed7 460 Gene3D G3DSA:1.20.1250.20 14 225 1.7E-8 T 26-04-2016 RGE_RS16325 eaaef7a9ec5a882d60f187326df08ed7 460 Gene3D G3DSA:1.20.1250.20 240 449 1.3E-9 T 26-04-2016 RGE_RS16065 15c858f40c0349837d276d94d50739a3 108 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 104 1.6E-33 T 26-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RGE_RS16065 15c858f40c0349837d276d94d50739a3 108 SUPERFAMILY SSF82607 10 102 3.14E-35 T 26-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RGE_RS16065 15c858f40c0349837d276d94d50739a3 108 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 4 97 23.291 T 26-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RGE_RS16065 15c858f40c0349837d276d94d50739a3 108 PANTHER PTHR33449 1 108 5.4E-48 T 26-04-2016 RGE_RS16065 15c858f40c0349837d276d94d50739a3 108 Gene3D G3DSA:3.30.1310.10 1 108 1.7E-49 T 26-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RGE_RS16065 15c858f40c0349837d276d94d50739a3 108 Pfam PF02575 YbaB/EbfC DNA-binding family 10 98 8.6E-36 T 26-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RGE_RS16065 15c858f40c0349837d276d94d50739a3 108 PIRSF PIRSF004555 2 108 1.1E-37 T 26-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RGE_RS16065 15c858f40c0349837d276d94d50739a3 108 PANTHER PTHR33449:SF1 1 108 5.4E-48 T 26-04-2016 RGE_RS09355 7e26f04ca91b2820424302e43c6b2fb9 324 SUPERFAMILY SSF52540 8 229 1.21E-56 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09355 7e26f04ca91b2820424302e43c6b2fb9 324 Pfam PF00005 ABC transporter 27 167 1.8E-29 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS09355 7e26f04ca91b2820424302e43c6b2fb9 324 PANTHER PTHR24220:SF595 9 233 1.3E-87 T 26-04-2016 RGE_RS09355 7e26f04ca91b2820424302e43c6b2fb9 324 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS09355 7e26f04ca91b2820424302e43c6b2fb9 324 Gene3D G3DSA:3.40.50.300 6 237 9.9E-63 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09355 7e26f04ca91b2820424302e43c6b2fb9 324 PANTHER PTHR24220 9 233 1.3E-87 T 26-04-2016 RGE_RS09355 7e26f04ca91b2820424302e43c6b2fb9 324 SMART SM00382 36 216 1.1E-12 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS16160 91c15dc2325377aa18a52d9e40c3c92a 346 Pfam PF12849 PBP superfamily domain 26 305 8.1E-64 T 26-04-2016 IPR024370 PBP domain RGE_RS16160 91c15dc2325377aa18a52d9e40c3c92a 346 Gene3D G3DSA:3.40.190.10 26 168 1.1E-54 T 26-04-2016 RGE_RS16160 91c15dc2325377aa18a52d9e40c3c92a 346 PANTHER PTHR30570:SF0 3 331 3.4E-136 T 26-04-2016 RGE_RS16160 91c15dc2325377aa18a52d9e40c3c92a 346 SUPERFAMILY SSF53850 27 333 1.56E-101 T 26-04-2016 RGE_RS16160 91c15dc2325377aa18a52d9e40c3c92a 346 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 27 333 1.3E-128 T 26-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 RGE_RS16160 91c15dc2325377aa18a52d9e40c3c92a 346 PANTHER PTHR30570 3 331 3.4E-136 T 26-04-2016 RGE_RS16160 91c15dc2325377aa18a52d9e40c3c92a 346 Gene3D G3DSA:3.40.190.10 179 334 1.6E-31 T 26-04-2016 RGE_RS16160 91c15dc2325377aa18a52d9e40c3c92a 346 PIRSF PIRSF002756 4 336 3.7E-108 T 26-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 RGE_RS01295 55fcdf4345b23c1871268e38ac31caeb 535 Gene3D G3DSA:3.20.20.80 54 451 1.9E-94 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS01295 55fcdf4345b23c1871268e38ac31caeb 535 PANTHER PTHR10357 430 535 1.5E-110 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS01295 55fcdf4345b23c1871268e38ac31caeb 535 PANTHER PTHR10357 56 400 1.5E-110 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS01295 55fcdf4345b23c1871268e38ac31caeb 535 Gene3D G3DSA:2.60.40.1180 452 533 9.0E-7 T 26-04-2016 IPR013780 Glycosyl hydrolase, all-beta RGE_RS01295 55fcdf4345b23c1871268e38ac31caeb 535 SUPERFAMILY SSF51445 56 451 2.96E-101 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS01295 55fcdf4345b23c1871268e38ac31caeb 535 PANTHER PTHR10357:SF11 430 535 1.5E-110 T 26-04-2016 RGE_RS01295 55fcdf4345b23c1871268e38ac31caeb 535 PANTHER PTHR10357:SF11 56 400 1.5E-110 T 26-04-2016 RGE_RS01295 55fcdf4345b23c1871268e38ac31caeb 535 SMART SM00642 63 445 3.2E-85 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS01295 55fcdf4345b23c1871268e38ac31caeb 535 Pfam PF00128 Alpha amylase, catalytic domain 78 386 2.7E-62 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS01295 55fcdf4345b23c1871268e38ac31caeb 535 SUPERFAMILY SSF51011 454 533 1.18E-5 T 26-04-2016 RGE_RS01725 8a1e165e2a660c14618d371a6a484b38 37 SUPERFAMILY SSF57840 1 37 9.81E-17 T 26-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01725 8a1e165e2a660c14618d371a6a484b38 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 37 4.0E-9 T 26-04-2016 RGE_RS01725 8a1e165e2a660c14618d371a6a484b38 37 PANTHER PTHR18804 1 37 3.6E-18 T 26-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01725 8a1e165e2a660c14618d371a6a484b38 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.483 T 26-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01725 8a1e165e2a660c14618d371a6a484b38 37 Pfam PF00444 Ribosomal protein L36 1 37 1.0E-19 T 26-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01725 8a1e165e2a660c14618d371a6a484b38 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 26-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01725 8a1e165e2a660c14618d371a6a484b38 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 4.0E-22 T 26-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS08010 677f85dcc5f2d520d9e063bf6baee0ad 575 Gene3D G3DSA:1.10.443.10 362 527 4.8E-17 T 26-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS08010 677f85dcc5f2d520d9e063bf6baee0ad 575 Pfam PF00589 Phage integrase family 371 526 3.0E-5 T 26-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS08010 677f85dcc5f2d520d9e063bf6baee0ad 575 SUPERFAMILY SSF56349 223 529 6.18E-33 T 26-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RGE_RS08010 677f85dcc5f2d520d9e063bf6baee0ad 575 Gene3D G3DSA:1.10.150.130 230 318 2.6E-6 T 26-04-2016 IPR023109 Integrase/recombinase, N-terminal RGE_RS16320 760ff0e98484bed6d25b37d1786c08f3 233 TIGRFAM TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase 10 229 5.9E-77 T 26-04-2016 IPR010251 Magnesium-protoporphyrin IX methyltransferase GO:0015995|GO:0046406 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16320 760ff0e98484bed6d25b37d1786c08f3 233 Pfam PF03602 Conserved hypothetical protein 95 40 102 2.5E-7 T 26-04-2016 RGE_RS16320 760ff0e98484bed6d25b37d1786c08f3 233 Gene3D G3DSA:3.40.50.150 7 154 5.8E-26 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16320 760ff0e98484bed6d25b37d1786c08f3 233 PANTHER PTHR10108 1 229 6.3E-24 T 26-04-2016 RGE_RS16320 760ff0e98484bed6d25b37d1786c08f3 233 Pfam PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus 132 232 7.1E-35 T 26-04-2016 IPR010940 Magnesium-protoporphyrin IX methyltransferase, C-terminal GO:0015995|GO:0046406 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16320 760ff0e98484bed6d25b37d1786c08f3 233 PANTHER PTHR10108:SF721 1 229 6.3E-24 T 26-04-2016 RGE_RS16320 760ff0e98484bed6d25b37d1786c08f3 233 SUPERFAMILY SSF53335 3 168 1.22E-32 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 15 103 1.4E-16 T 26-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 SUPERFAMILY SSF51011 589 683 6.76E-16 T 26-04-2016 RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 SUPERFAMILY SSF51445 141 475 3.64E-123 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 SUPERFAMILY SSF51445 504 574 3.64E-123 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 PANTHER PTHR10357:SF74 608 684 1.6E-275 T 26-04-2016 RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 PANTHER PTHR10357:SF74 8 581 1.6E-275 T 26-04-2016 RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 Gene3D G3DSA:2.60.40.10 11 159 1.2E-51 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 11 683 7.0E-281 T 26-04-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 Gene3D G3DSA:2.60.40.1180 590 683 2.0E-16 T 26-04-2016 IPR013780 Glycosyl hydrolase, all-beta RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 Pfam PF00128 Alpha amylase, catalytic domain 197 297 4.9E-8 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 PANTHER PTHR10357 608 684 1.6E-275 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 PANTHER PTHR10357 8 581 1.6E-275 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 SMART SM00642 165 563 1.3E-8 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 Gene3D G3DSA:3.20.20.80 160 577 2.4E-113 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS14170 c2ed0f9bdfdc2bbde2280ba072435001 687 SUPERFAMILY SSF81296 11 154 6.16E-43 T 26-04-2016 IPR014756 Immunoglobulin E-set RGE_RS19660 179e07965b26da45a49b9f7b85ea447d 313 PANTHER PTHR21621:SF0 17 302 3.0E-49 T 26-04-2016 RGE_RS19660 179e07965b26da45a49b9f7b85ea447d 313 Pfam PF08443 RimK-like ATP-grasp domain 107 297 2.2E-16 T 26-04-2016 IPR013651 ATP-grasp fold, RimK-type RGE_RS19660 179e07965b26da45a49b9f7b85ea447d 313 Gene3D G3DSA:3.40.50.20 7 110 2.3E-25 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS19660 179e07965b26da45a49b9f7b85ea447d 313 Gene3D G3DSA:3.30.470.20 186 289 3.6E-15 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS19660 179e07965b26da45a49b9f7b85ea447d 313 Gene3D G3DSA:3.30.470.20 111 164 1.1E-5 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS19660 179e07965b26da45a49b9f7b85ea447d 313 PANTHER PTHR21621 17 302 3.0E-49 T 26-04-2016 RGE_RS19660 179e07965b26da45a49b9f7b85ea447d 313 SUPERFAMILY SSF56059 109 301 1.15E-35 T 26-04-2016 RGE_RS04645 7adacfb2de59ca6b763772f1a7bee3f4 313 Pfam PF01795 MraW methylase family 10 308 3.9E-99 T 26-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS04645 7adacfb2de59ca6b763772f1a7bee3f4 313 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 10 308 1.0E-98 T 26-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS04645 7adacfb2de59ca6b763772f1a7bee3f4 313 PANTHER PTHR11265:SF0 11 311 1.6E-134 T 26-04-2016 RGE_RS04645 7adacfb2de59ca6b763772f1a7bee3f4 313 SUPERFAMILY SSF53335 217 309 2.62E-46 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS04645 7adacfb2de59ca6b763772f1a7bee3f4 313 SUPERFAMILY SSF53335 10 116 2.62E-46 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS04645 7adacfb2de59ca6b763772f1a7bee3f4 313 Gene3D G3DSA:1.10.150.170 115 219 3.4E-35 T 26-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS04645 7adacfb2de59ca6b763772f1a7bee3f4 313 Gene3D G3DSA:3.40.50.150 11 113 2.4E-49 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS04645 7adacfb2de59ca6b763772f1a7bee3f4 313 Gene3D G3DSA:3.40.50.150 220 309 2.4E-49 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS04645 7adacfb2de59ca6b763772f1a7bee3f4 313 SUPERFAMILY SSF81799 117 217 7.19E-31 T 26-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS04645 7adacfb2de59ca6b763772f1a7bee3f4 313 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 11 309 36.955 T 26-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS04645 7adacfb2de59ca6b763772f1a7bee3f4 313 PANTHER PTHR11265 11 311 1.6E-134 T 26-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS04645 7adacfb2de59ca6b763772f1a7bee3f4 313 PIRSF PIRSF004486 5 310 7.7E-98 T 26-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS02990 79fab6a0c080b293206b5933f18161bf 754 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 49 754 1.2E-125 T 26-04-2016 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 RGE_RS02990 79fab6a0c080b293206b5933f18161bf 754 SUPERFAMILY SSF56935 42 754 8.62E-111 T 26-04-2016 RGE_RS02990 79fab6a0c080b293206b5933f18161bf 754 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 180 2.9E-23 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS02990 79fab6a0c080b293206b5933f18161bf 754 PANTHER PTHR32552:SF18 18 754 1.4E-109 T 26-04-2016 RGE_RS02990 79fab6a0c080b293206b5933f18161bf 754 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 48 754 1.3E-118 T 26-04-2016 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 RGE_RS02990 79fab6a0c080b293206b5933f18161bf 754 Gene3D G3DSA:2.170.130.10 44 183 9.0E-34 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS02990 79fab6a0c080b293206b5933f18161bf 754 PANTHER PTHR32552 18 754 1.4E-109 T 26-04-2016 RGE_RS02990 79fab6a0c080b293206b5933f18161bf 754 Pfam PF00593 TonB dependent receptor 495 753 3.9E-36 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS02990 79fab6a0c080b293206b5933f18161bf 754 Gene3D G3DSA:2.40.170.20 184 754 5.7E-95 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS17565 9eafe30c06966eb0af44b674f28410df 294 PRINTS PR00478 Phosphoribulokinase family signature 127 145 2.4E-34 T 26-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RGE_RS17565 9eafe30c06966eb0af44b674f28410df 294 PRINTS PR00478 Phosphoribulokinase family signature 183 206 2.4E-34 T 26-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RGE_RS17565 9eafe30c06966eb0af44b674f28410df 294 PRINTS PR00478 Phosphoribulokinase family signature 12 29 2.4E-34 T 26-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RGE_RS17565 9eafe30c06966eb0af44b674f28410df 294 PRINTS PR00478 Phosphoribulokinase family signature 165 182 2.4E-34 T 26-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RGE_RS17565 9eafe30c06966eb0af44b674f28410df 294 SUPERFAMILY SSF52540 3 287 6.6E-49 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17565 9eafe30c06966eb0af44b674f28410df 294 Gene3D G3DSA:3.40.50.300 1 288 2.0E-127 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17565 9eafe30c06966eb0af44b674f28410df 294 PANTHER PTHR10285 1 287 3.8E-117 T 26-04-2016 RGE_RS17565 9eafe30c06966eb0af44b674f28410df 294 ProSitePatterns PS00567 Phosphoribulokinase signature. 165 178 - T 26-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RGE_RS17565 9eafe30c06966eb0af44b674f28410df 294 PANTHER PTHR10285:SF72 1 287 3.8E-117 T 26-04-2016 RGE_RS17565 9eafe30c06966eb0af44b674f28410df 294 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 215 9.5E-75 T 26-04-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 RGE_RS18215 fdb35ac59073c5dbcc0ac763112752be 162 Pfam PF01899 Na+/H+ ion antiporter subunit 13 160 2.8E-31 T 26-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RGE_RS18215 fdb35ac59073c5dbcc0ac763112752be 162 PIRSF PIRSF019239 1 162 1.5E-28 T 26-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RGE_RS18215 fdb35ac59073c5dbcc0ac763112752be 162 PANTHER PTHR34584 3 162 1.4E-21 T 26-04-2016 RGE_RS18215 fdb35ac59073c5dbcc0ac763112752be 162 PANTHER PTHR34584:SF1 3 162 1.4E-21 T 26-04-2016 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 130 142 5.5E-72 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 239 260 5.5E-72 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 145 169 5.5E-72 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 108 116 5.5E-72 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 277 295 5.5E-72 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 5.5E-72 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 63 73 5.5E-72 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 200 216 5.5E-72 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 42 57 5.5E-72 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PANTHER PTHR22912:SF48 1 316 5.0E-158 T 26-04-2016 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PANTHER PTHR22912 1 316 5.0E-158 T 26-04-2016 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 137 157 - T 26-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 301 2.6E-47 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 Gene3D G3DSA:3.50.50.60 6 111 3.9E-35 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 9 314 7.1E-119 T 26-04-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 Gene3D G3DSA:3.50.50.60 112 308 6.3E-31 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 SUPERFAMILY SSF51905 2 314 1.13E-53 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 289 1.2E-38 T 26-04-2016 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 1.2E-38 T 26-04-2016 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 1.2E-38 T 26-04-2016 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 1.2E-38 T 26-04-2016 RGE_RS16645 e3c1f18746bbea1ca0e559193a36c751 319 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 1.2E-38 T 26-04-2016 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 PANTHER PTHR30314:SF3 4 408 5.1E-159 T 26-04-2016 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 Gene3D G3DSA:3.40.50.1440 14 212 2.6E-86 T 26-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 171 1.6E-36 T 26-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 SUPERFAMILY SSF52490 14 206 1.7E-63 T 26-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 SUPERFAMILY SSF55307 202 318 4.58E-37 T 26-04-2016 IPR008280 Tubulin/FtsZ, C-terminal RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 10 345 34.711 T 26-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 Pfam PF12327 FtsZ family, C-terminal domain 220 315 2.3E-26 T 26-04-2016 IPR024757 Cell division protein FtsZ, C-terminal RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 11 323 9.2E-115 T 26-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 PANTHER PTHR30314 4 408 5.1E-159 T 26-04-2016 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 SMART SM00864 14 203 4.9E-103 T 26-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 PRINTS PR00423 Cell division protein FtsZ signature 210 231 7.2E-49 T 26-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 PRINTS PR00423 Cell division protein FtsZ signature 124 145 7.2E-49 T 26-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 PRINTS PR00423 Cell division protein FtsZ signature 96 116 7.2E-49 T 26-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 PRINTS PR00423 Cell division protein FtsZ signature 187 209 7.2E-49 T 26-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 Gene3D G3DSA:3.30.1330.20 213 320 9.1E-41 T 26-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 ProSitePatterns PS01135 FtsZ protein signature 2. 95 116 - T 26-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RGE_RS04710 d8bcec0b44ba14d1a43bb39eca7520a4 410 SMART SM00865 205 324 4.6E-46 T 26-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RGE_RS01185 0d3a1b0fe56d41a8726c89c7c450a4e3 463 Pfam PF00155 Aminotransferase class I and II 130 448 1.7E-30 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS01185 0d3a1b0fe56d41a8726c89c7c450a4e3 463 Gene3D G3DSA:1.10.10.10 6 75 5.1E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01185 0d3a1b0fe56d41a8726c89c7c450a4e3 463 Gene3D G3DSA:3.40.640.10 143 359 1.5E-62 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS01185 0d3a1b0fe56d41a8726c89c7c450a4e3 463 SUPERFAMILY SSF46785 5 83 4.19E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01185 0d3a1b0fe56d41a8726c89c7c450a4e3 463 SUPERFAMILY SSF53383 115 460 6.93E-76 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS01185 0d3a1b0fe56d41a8726c89c7c450a4e3 463 PANTHER PTHR11751:SF386 85 461 3.8E-77 T 26-04-2016 RGE_RS01185 0d3a1b0fe56d41a8726c89c7c450a4e3 463 PANTHER PTHR11751 85 461 3.8E-77 T 26-04-2016 RGE_RS01185 0d3a1b0fe56d41a8726c89c7c450a4e3 463 SMART SM00345 14 73 2.2E-12 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS01185 0d3a1b0fe56d41a8726c89c7c450a4e3 463 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 73 1.5E-13 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 560 576 - T 26-04-2016 IPR031312 Sodium/sulphate symporter, conserved site RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 SUPERFAMILY SSF116726 322 395 4.05E-15 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 Pfam PF03600 Citrate transporter 17 498 1.7E-39 T 26-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 SUPERFAMILY SSF116726 231 289 3.66E-10 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 PANTHER PTHR10283 1 225 2.2E-176 T 26-04-2016 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 PANTHER PTHR10283 442 612 2.2E-176 T 26-04-2016 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 PANTHER PTHR10283 342 391 2.2E-176 T 26-04-2016 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 Pfam PF02080 TrkA-C domain 328 392 1.3E-12 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 Pfam PF02080 TrkA-C domain 231 288 1.1E-11 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 PANTHER PTHR10283:SF12 1 225 2.2E-176 T 26-04-2016 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 PANTHER PTHR10283:SF12 442 612 2.2E-176 T 26-04-2016 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 PANTHER PTHR10283:SF12 342 391 2.2E-176 T 26-04-2016 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 Gene3D G3DSA:3.30.70.1450 231 301 1.5E-14 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS17115 5d63b2748db0611cdd78d2b36c81dd88 612 Gene3D G3DSA:3.30.70.1450 324 398 3.1E-18 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS01390 015d3c238f8f838be68bfdaaf9feec1f 302 PANTHER PTHR32322 14 298 1.4E-68 T 26-04-2016 RGE_RS01390 015d3c238f8f838be68bfdaaf9feec1f 302 SUPERFAMILY SSF103481 193 294 1.24E-9 T 26-04-2016 RGE_RS01390 015d3c238f8f838be68bfdaaf9feec1f 302 PANTHER PTHR32322:SF9 14 298 1.4E-68 T 26-04-2016 RGE_RS01390 015d3c238f8f838be68bfdaaf9feec1f 302 SUPERFAMILY SSF103481 50 144 3.66E-11 T 26-04-2016 RGE_RS01390 015d3c238f8f838be68bfdaaf9feec1f 302 Pfam PF00892 EamA-like transporter family 16 141 5.7E-14 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS01390 015d3c238f8f838be68bfdaaf9feec1f 302 Pfam PF00892 EamA-like transporter family 151 290 7.4E-13 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS12320 bb208f3792b53fedf02768793fcdb9cd 574 SUPERFAMILY SSF52518 4 182 4.52E-45 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS12320 bb208f3792b53fedf02768793fcdb9cd 574 Gene3D G3DSA:3.40.50.1220 183 340 1.6E-48 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS12320 bb208f3792b53fedf02768793fcdb9cd 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 192 325 1.8E-33 T 26-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RGE_RS12320 bb208f3792b53fedf02768793fcdb9cd 574 PANTHER PTHR18968 1 541 2.9E-132 T 26-04-2016 RGE_RS12320 bb208f3792b53fedf02768793fcdb9cd 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 172 3.5E-48 T 26-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RGE_RS12320 bb208f3792b53fedf02768793fcdb9cd 574 TIGRFAM TIGR03457 sulphoacet_xsc: sulfoacetaldehyde acetyltransferase 7 567 2.3E-246 T 26-04-2016 IPR017820 Sulphoacetaldehyde acetyltransferase GO:0000287|GO:0005737|GO:0019529|GO:0030976|GO:0050487 KEGG: 00430+2.3.3.15|MetaCyc: PWY-1281|MetaCyc: PWY-6637|UniPathway: UPA00336 RGE_RS12320 bb208f3792b53fedf02768793fcdb9cd 574 Gene3D G3DSA:3.40.50.970 4 179 5.9E-54 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS12320 bb208f3792b53fedf02768793fcdb9cd 574 SUPERFAMILY SSF52518 372 558 7.27E-53 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS12320 bb208f3792b53fedf02768793fcdb9cd 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 395 541 5.2E-37 T 26-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RGE_RS12320 bb208f3792b53fedf02768793fcdb9cd 574 SUPERFAMILY SSF52467 185 365 6.18E-41 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS12320 bb208f3792b53fedf02768793fcdb9cd 574 Gene3D G3DSA:3.40.50.970 352 546 4.0E-56 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 Pfam PF00512 His Kinase A (phospho-acceptor) domain 411 472 2.3E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 SMART SM00388 411 476 4.0E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 567 2.2E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 PRINTS PR00344 Bacterial sensor protein C-terminal signature 606 619 2.2E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 PRINTS PR00344 Bacterial sensor protein C-terminal signature 582 600 2.2E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 PRINTS PR00344 Bacterial sensor protein C-terminal signature 571 581 2.2E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 515 620 6.1E-24 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 Gene3D G3DSA:1.10.287.130 407 471 5.7E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 SUPERFAMILY SSF55874 475 621 3.27E-41 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 Gene3D G3DSA:3.30.450.20 280 394 5.6E-21 T 26-04-2016 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 Gene3D G3DSA:3.30.565.10 479 620 7.2E-42 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 SMART SM00304 235 285 0.003 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 SMART SM00387 515 622 4.6E-38 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 SUPERFAMILY SSF55785 285 389 5.93E-18 T 26-04-2016 IPR000014 PAS domain RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 Pfam PF00989 PAS fold 288 393 9.1E-15 T 26-04-2016 IPR013767 PAS fold GO:0006355 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 PANTHER PTHR24423 14 31 1.9E-89 T 26-04-2016 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 PANTHER PTHR24423 283 632 1.9E-89 T 26-04-2016 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 SUPERFAMILY SSF47384 407 474 4.71E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 289 398 1.4E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 Pfam PF00672 HAMP domain 216 280 3.5E-7 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS04845 f0e7c32d21e2fad25a90d5c630d2c527 632 SMART SM00091 285 352 1.6E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS21940 325ec4cc8d2336692caaa73b86479894 430 SUPERFAMILY SSF51905 384 415 1.65E-51 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS21940 325ec4cc8d2336692caaa73b86479894 430 SUPERFAMILY SSF51905 3 301 1.65E-51 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS21940 325ec4cc8d2336692caaa73b86479894 430 Pfam PF01593 Flavin containing amine oxidoreductase 11 267 2.2E-18 T 26-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RGE_RS21940 325ec4cc8d2336692caaa73b86479894 430 Gene3D G3DSA:3.50.50.60 3 94 7.7E-29 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS21940 325ec4cc8d2336692caaa73b86479894 430 Gene3D G3DSA:3.50.50.60 152 153 7.7E-29 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS21940 325ec4cc8d2336692caaa73b86479894 430 Gene3D G3DSA:3.50.50.60 203 287 7.7E-29 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS21940 325ec4cc8d2336692caaa73b86479894 430 PANTHER PTHR10742 1 417 9.3E-150 T 26-04-2016 RGE_RS21940 325ec4cc8d2336692caaa73b86479894 430 PANTHER PTHR10742:SF275 1 417 9.3E-150 T 26-04-2016 RGE_RS18365 46e41f5725ba04fbd9f6ac48fae1e283 533 SUPERFAMILY SSF161098 3 252 4.36E-35 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS18365 46e41f5725ba04fbd9f6ac48fae1e283 533 Gene3D G3DSA:1.10.3720.10 288 530 8.4E-22 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS18365 46e41f5725ba04fbd9f6ac48fae1e283 533 Gene3D G3DSA:1.10.3720.10 5 258 1.8E-25 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS18365 46e41f5725ba04fbd9f6ac48fae1e283 533 SUPERFAMILY SSF161098 283 530 3.83E-32 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS18365 46e41f5725ba04fbd9f6ac48fae1e283 533 PANTHER PTHR30183 1 533 1.3E-154 T 26-04-2016 RGE_RS18365 46e41f5725ba04fbd9f6ac48fae1e283 533 PANTHER PTHR30183:SF2 1 533 1.3E-154 T 26-04-2016 RGE_RS18365 46e41f5725ba04fbd9f6ac48fae1e283 533 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 64 255 2.0E-13 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS18365 46e41f5725ba04fbd9f6ac48fae1e283 533 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 366 527 1.1E-5 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12850 f388fd65fcc0433f6a1a04dd6dbf20fe 120 Gene3D G3DSA:1.20.1290.10 2 115 1.2E-34 T 26-04-2016 IPR029032 AhpD-like RGE_RS12850 f388fd65fcc0433f6a1a04dd6dbf20fe 120 PANTHER PTHR33930 1 119 1.2E-31 T 26-04-2016 RGE_RS12850 f388fd65fcc0433f6a1a04dd6dbf20fe 120 Pfam PF02627 Carboxymuconolactone decarboxylase family 24 106 6.0E-19 T 26-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RGE_RS12850 f388fd65fcc0433f6a1a04dd6dbf20fe 120 PANTHER PTHR33930:SF2 1 119 1.2E-31 T 26-04-2016 RGE_RS12850 f388fd65fcc0433f6a1a04dd6dbf20fe 120 SUPERFAMILY SSF69118 3 111 2.62E-27 T 26-04-2016 IPR029032 AhpD-like RGE_RS12850 f388fd65fcc0433f6a1a04dd6dbf20fe 120 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 41 86 1.7E-11 T 26-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RGE_RS15110 928dfbe0ef3c47809e16f651d1f98fb3 462 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 154 174 - T 26-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RGE_RS15110 928dfbe0ef3c47809e16f651d1f98fb3 462 Gene3D G3DSA:2.40.50.140 394 461 9.9E-18 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS15110 928dfbe0ef3c47809e16f651d1f98fb3 462 Pfam PF04055 Radical SAM superfamily 156 337 5.8E-29 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS15110 928dfbe0ef3c47809e16f651d1f98fb3 462 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 8 458 8.6E-156 T 26-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 RGE_RS15110 928dfbe0ef3c47809e16f651d1f98fb3 462 Pfam PF00919 Uncharacterized protein family UPF0004 8 88 1.7E-18 T 26-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RGE_RS15110 928dfbe0ef3c47809e16f651d1f98fb3 462 SUPERFAMILY SSF102114 123 384 1.26E-49 T 26-04-2016 RGE_RS15110 928dfbe0ef3c47809e16f651d1f98fb3 462 PANTHER PTHR11918 6 462 1.2E-197 T 26-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RGE_RS15110 928dfbe0ef3c47809e16f651d1f98fb3 462 Gene3D G3DSA:3.80.30.20 148 391 7.7E-68 T 26-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RGE_RS15110 928dfbe0ef3c47809e16f651d1f98fb3 462 SMART SM00729 150 379 5.1E-50 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS15110 928dfbe0ef3c47809e16f651d1f98fb3 462 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 6 461 58.181 T 26-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 RGE_RS15110 928dfbe0ef3c47809e16f651d1f98fb3 462 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 7 459 2.9E-94 T 26-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RGE_RS15110 928dfbe0ef3c47809e16f651d1f98fb3 462 PANTHER PTHR11918:SF57 6 462 1.2E-197 T 26-04-2016 RGE_RS07580 da1d8a5e908c2395ab218a0861860065 134 PANTHER PTHR10093:SF3 1 128 1.4E-96 T 26-04-2016 RGE_RS07580 da1d8a5e908c2395ab218a0861860065 134 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 126 5.3E-66 T 26-04-2016 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 RGE_RS07580 da1d8a5e908c2395ab218a0861860065 134 Pfam PF01592 NifU-like N terminal domain 2 127 7.5E-58 T 26-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 RGE_RS07580 da1d8a5e908c2395ab218a0861860065 134 PANTHER PTHR10093 1 128 1.4E-96 T 26-04-2016 RGE_RS07580 da1d8a5e908c2395ab218a0861860065 134 Gene3D G3DSA:3.90.1010.10 2 129 1.5E-55 T 26-04-2016 RGE_RS07580 da1d8a5e908c2395ab218a0861860065 134 SUPERFAMILY SSF82649 1 128 7.06E-48 T 26-04-2016 RGE_RS00600 daa1ba9ffd1b6bbab89d02bda4e0547f 413 Gene3D G3DSA:1.20.1250.20 206 398 3.6E-9 T 26-04-2016 RGE_RS00600 daa1ba9ffd1b6bbab89d02bda4e0547f 413 PANTHER PTHR11360 22 395 2.8E-20 T 26-04-2016 RGE_RS00600 daa1ba9ffd1b6bbab89d02bda4e0547f 413 SUPERFAMILY SSF103473 6 402 5.36E-37 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS00600 daa1ba9ffd1b6bbab89d02bda4e0547f 413 Pfam PF07690 Major Facilitator Superfamily 11 247 3.2E-16 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS00600 daa1ba9ffd1b6bbab89d02bda4e0547f 413 Gene3D G3DSA:1.20.1250.20 6 191 1.6E-21 T 26-04-2016 RGE_RS00255 647dcd4c5808e48c739be976f34b4516 212 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 170 185 1.1E-5 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS00255 647dcd4c5808e48c739be976f34b4516 212 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 154 170 1.1E-5 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS00255 647dcd4c5808e48c739be976f34b4516 212 SUPERFAMILY SSF51206 9 136 8.38E-19 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS00255 647dcd4c5808e48c739be976f34b4516 212 SMART SM00419 148 196 8.4E-12 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS00255 647dcd4c5808e48c739be976f34b4516 212 Pfam PF00027 Cyclic nucleotide-binding domain 23 107 5.9E-7 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS00255 647dcd4c5808e48c739be976f34b4516 212 Gene3D G3DSA:2.60.120.10 9 136 5.1E-19 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS00255 647dcd4c5808e48c739be976f34b4516 212 PANTHER PTHR24567 25 205 4.4E-27 T 26-04-2016 RGE_RS00255 647dcd4c5808e48c739be976f34b4516 212 Pfam PF13545 Crp-like helix-turn-helix domain 141 203 4.2E-14 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS00255 647dcd4c5808e48c739be976f34b4516 212 Gene3D G3DSA:1.10.10.10 152 205 8.1E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00255 647dcd4c5808e48c739be976f34b4516 212 SUPERFAMILY SSF46785 139 205 1.05E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 SUPERFAMILY SSF53901 273 393 6.59E-42 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 88 106 - T 26-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 SUPERFAMILY SSF53901 7 272 1.23E-85 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 Gene3D G3DSA:3.40.47.10 7 127 3.2E-68 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 Gene3D G3DSA:3.40.47.10 197 278 3.2E-68 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 ProSitePatterns PS00099 Thiolases active site. 376 389 - T 26-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 Pfam PF02803 Thiolase, C-terminal domain 272 394 1.6E-42 T 26-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 Gene3D G3DSA:3.40.47.10 148 196 1.2E-62 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 Gene3D G3DSA:3.40.47.10 279 393 1.2E-62 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 9 393 3.0E-135 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 PANTHER PTHR18919:SF95 2 395 1.1E-183 T 26-04-2016 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 PIRSF PIRSF000429 1 395 1.5E-127 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 Pfam PF00108 Thiolase, N-terminal domain 7 264 3.3E-88 T 26-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RGE_RS11730 c78dca06e73bdbfe9c6d68f8122c4128 395 PANTHER PTHR18919 2 395 1.1E-183 T 26-04-2016 RGE_RS02470 2a31cd70e4418690addee24d2ccd5c4f 387 SUPERFAMILY SSF52540 162 346 1.6E-32 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02470 2a31cd70e4418690addee24d2ccd5c4f 387 PANTHER PTHR34383:SF2 125 385 8.3E-152 T 26-04-2016 RGE_RS02470 2a31cd70e4418690addee24d2ccd5c4f 387 PANTHER PTHR34383 125 385 8.3E-152 T 26-04-2016 RGE_RS02470 2a31cd70e4418690addee24d2ccd5c4f 387 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 131 356 3.5E-119 T 26-04-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 RGE_RS02470 2a31cd70e4418690addee24d2ccd5c4f 387 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 131 356 3.8E-107 T 26-04-2016 IPR022488 Polyphosphate kinase-2-related RGE_RS02470 2a31cd70e4418690addee24d2ccd5c4f 387 Gene3D G3DSA:3.40.50.300 124 360 1.6E-109 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 Gene3D G3DSA:1.10.220.30 2 62 2.7E-16 T 26-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 Pfam PF14841 FliG middle domain 114 183 6.5E-24 T 26-04-2016 IPR032779 Flagellar motor switch protein FliG, middle domain RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 Pfam PF01706 FliG C-terminal domain 217 322 2.2E-40 T 26-04-2016 IPR023087 Flagellar motor switch protein FliG, C-terminal RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 32 58 7.4E-64 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 3 19 7.4E-64 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 193 218 7.4E-64 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 246 266 7.4E-64 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 270 296 7.4E-64 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 224 244 7.4E-64 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 112 135 7.4E-64 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 6 329 2.6E-103 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 SUPERFAMILY SSF48029 2 121 4.05E-23 T 26-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 SUPERFAMILY SSF48029 112 323 1.14E-65 T 26-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 PANTHER PTHR30534:SF0 2 331 1.5E-100 T 26-04-2016 RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 PIRSF PIRSF003161 1 331 1.0E-113 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 Gene3D G3DSA:1.10.220.30 73 181 1.1E-28 T 26-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 Gene3D G3DSA:1.10.220.30 193 330 2.8E-43 T 26-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 PANTHER PTHR30534 2 331 1.5E-100 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS08265 ce7e77bdfa2612089da00757c1e27e63 331 Pfam PF14842 FliG N-terminal domain 5 103 2.7E-30 T 26-04-2016 IPR028263 Flagellar motor switch protein FliG, N-terminal domain RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 Gene3D G3DSA:3.40.50.300 481 640 2.5E-47 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 978 17.501 T 26-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 Gene3D G3DSA:3.40.50.10050 781 859 5.2E-25 T 26-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 SUPERFAMILY SSF52156 759 887 1.19E-36 T 26-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 48 2.3E-6 T 26-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 403 454 3.5E-15 T 26-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 Gene3D G3DSA:2.40.30.10 882 978 4.4E-37 T 26-04-2016 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 484 639 8.4E-31 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 SUPERFAMILY SSF46955 4 51 1.03E-8 T 26-04-2016 IPR009061 Putative DNA-binding domain RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 Pfam PF00009 Elongation factor Tu GTP binding domain 486 642 4.0E-34 T 26-04-2016 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 ProSitePatterns PS01176 Initiation factor 2 signature. 931 953 - T 26-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 SUPERFAMILY SSF52540 477 650 2.52E-52 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 Pfam PF11987 Translation-initiation factor 2 766 870 4.3E-37 T 26-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 61 99 8.7E-15 T 26-04-2016 IPR013575 Initiation factor 2 associated domain, bacterial RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 SUPERFAMILY SSF50447 655 736 2.91E-26 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 PANTHER PTHR23115 466 808 5.1E-207 T 26-04-2016 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 PANTHER PTHR23115 833 978 5.1E-207 T 26-04-2016 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 SUPERFAMILY SSF50447 882 978 1.56E-32 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 PANTHER PTHR23115:SF184 466 808 5.1E-207 T 26-04-2016 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 PANTHER PTHR23115:SF184 833 978 5.1E-207 T 26-04-2016 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 Gene3D G3DSA:2.40.30.10 653 746 3.8E-25 T 26-04-2016 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 Gene3D G3DSA:3.30.56.50 4 51 4.3E-16 T 26-04-2016 RGE_RS13765 ab0535ab34e9be9b1b8caa9b3086884e 980 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 398 980 3.5E-260 T 26-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RGE_RS11890 d21c0508f1092069da04b09657425690 96 SUPERFAMILY SSF54909 2 93 5.01E-22 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS11890 d21c0508f1092069da04b09657425690 96 SMART SM00886 3 94 1.6E-24 T 26-04-2016 IPR013097 Stress responsive alpha-beta barrel RGE_RS11890 d21c0508f1092069da04b09657425690 96 Gene3D G3DSA:3.30.70.900 3 93 9.2E-23 T 26-04-2016 RGE_RS11890 d21c0508f1092069da04b09657425690 96 Pfam PF07876 Stress responsive A/B Barrel Domain 3 93 4.3E-16 T 26-04-2016 IPR013097 Stress responsive alpha-beta barrel RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 PANTHER PTHR33712:SF7 29 260 3.7E-188 T 26-04-2016 RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 PANTHER PTHR33712:SF7 278 519 3.7E-188 T 26-04-2016 RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 88 95 - T 26-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 TIGRFAM TIGR01286 nifK: nitrogenase molybdenum-iron protein beta chain 2 519 3.8E-246 T 26-04-2016 IPR005976 Nitrogenase molybdenum-iron protein beta chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 SUPERFAMILY SSF53807 3 518 9.81E-168 T 26-04-2016 RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 151 165 - T 26-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 Gene3D G3DSA:3.40.50.1980 70 211 4.5E-52 T 26-04-2016 RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 Gene3D G3DSA:3.40.50.1980 349 473 6.7E-52 T 26-04-2016 RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 PANTHER PTHR33712 29 260 3.7E-188 T 26-04-2016 RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 PANTHER PTHR33712 278 519 3.7E-188 T 26-04-2016 RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 70 493 5.4E-118 T 26-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 Pfam PF11844 Domain of unknown function (DUF3364) 1 56 2.3E-24 T 26-04-2016 IPR024564 Nitrogenase molybdenum-iron protein beta chain, N-terminal KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RGE_RS20910 7eef9385143f65bd2f7e8c5efd86295c 519 Gene3D G3DSA:3.40.50.1980 221 323 5.7E-33 T 26-04-2016 RGE_RS13415 ab04c72e17da034007b1746f4fb7a2cd 267 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 13 252 4.2E-60 T 26-04-2016 IPR013360 Pilus biogenesis/stability type IV, PilW RGE_RS13415 ab04c72e17da034007b1746f4fb7a2cd 267 SUPERFAMILY SSF48452 54 210 5.38E-23 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS13415 ab04c72e17da034007b1746f4fb7a2cd 267 SMART SM00028 82 115 0.0013 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS13415 ab04c72e17da034007b1746f4fb7a2cd 267 SMART SM00028 152 185 19.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS13415 ab04c72e17da034007b1746f4fb7a2cd 267 SMART SM00028 186 219 120.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS13415 ab04c72e17da034007b1746f4fb7a2cd 267 SMART SM00028 48 81 0.55 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS13415 ab04c72e17da034007b1746f4fb7a2cd 267 PANTHER PTHR23083 54 257 3.3E-26 T 26-04-2016 RGE_RS13415 ab04c72e17da034007b1746f4fb7a2cd 267 Gene3D G3DSA:1.25.40.10 47 264 8.9E-33 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS13415 ab04c72e17da034007b1746f4fb7a2cd 267 Pfam PF14559 Tetratricopeptide repeat 165 218 1.6E-6 T 26-04-2016 RGE_RS13415 ab04c72e17da034007b1746f4fb7a2cd 267 Pfam PF13432 Tetratricopeptide repeat 52 114 1.6E-5 T 26-04-2016 RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 Gene3D G3DSA:3.30.450.20 112 225 7.9E-18 T 26-04-2016 RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 SUPERFAMILY SSF55785 127 236 1.44E-21 T 26-04-2016 IPR000014 PAS domain RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 Gene3D G3DSA:3.30.565.10 302 379 8.3E-4 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 SUPERFAMILY SSF55785 6 102 2.09E-16 T 26-04-2016 IPR000014 PAS domain RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 Pfam PF13426 PAS domain 2 101 4.1E-12 T 26-04-2016 IPR000014 PAS domain RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 Pfam PF13426 PAS domain 127 225 1.4E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 SMART SM00388 247 315 4.2E-22 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 SMART SM00091 113 178 2.9E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 SMART SM00091 1 54 4.5 T 26-04-2016 IPR000014 PAS domain RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 Pfam PF00512 His Kinase A (phospho-acceptor) domain 247 315 1.8E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 PANTHER PTHR24423 7 371 1.8E-59 T 26-04-2016 RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 SUPERFAMILY SSF47384 231 315 7.06E-21 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 Gene3D G3DSA:3.30.450.20 3 100 2.6E-16 T 26-04-2016 RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 3 101 1.9E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 112 234 1.7E-20 T 26-04-2016 IPR000014 PAS domain RGE_RS02365 a8270b484f92c928db04c3a8e35f035f 459 Gene3D G3DSA:1.10.287.130 244 301 2.5E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07910 7b6a5ac79547d2003c542e5bb7939eb0 234 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 26-04-2016 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 RGE_RS07910 7b6a5ac79547d2003c542e5bb7939eb0 234 Pfam PF01144 Coenzyme A transferase 7 217 6.7E-77 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS07910 7b6a5ac79547d2003c542e5bb7939eb0 234 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 216 3.3E-75 T 26-04-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 RGE_RS07910 7b6a5ac79547d2003c542e5bb7939eb0 234 SUPERFAMILY SSF100950 3 228 2.77E-87 T 26-04-2016 RGE_RS07910 7b6a5ac79547d2003c542e5bb7939eb0 234 PANTHER PTHR13707 3 231 4.7E-139 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS07910 7b6a5ac79547d2003c542e5bb7939eb0 234 SMART SM00882 5 217 4.6E-91 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS07910 7b6a5ac79547d2003c542e5bb7939eb0 234 Gene3D G3DSA:3.40.1080.10 3 216 8.4E-99 T 26-04-2016 RGE_RS23380 a776ae3a2d033ba71986b194e8408465 274 PANTHER PTHR42194:SF1 1 273 5.3E-62 T 26-04-2016 RGE_RS23380 a776ae3a2d033ba71986b194e8408465 274 Pfam PF05114 Protein of unknown function (DUF692) 6 271 2.4E-100 T 26-04-2016 IPR007801 Uncharacterised protein family UPF0276 RGE_RS23380 a776ae3a2d033ba71986b194e8408465 274 Gene3D G3DSA:3.20.20.150 6 273 3.5E-96 T 26-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RGE_RS23380 a776ae3a2d033ba71986b194e8408465 274 SUPERFAMILY SSF51658 25 211 8.7E-7 T 26-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RGE_RS23380 a776ae3a2d033ba71986b194e8408465 274 PANTHER PTHR42194 1 273 5.3E-62 T 26-04-2016 RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 SUPERFAMILY SSF47757 12 87 7.45E-24 T 26-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 SMART SM00138 20 280 6.9E-97 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 PANTHER PTHR24422 13 277 4.4E-106 T 26-04-2016 RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 Gene3D G3DSA:3.40.50.150 87 277 2.6E-63 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 PIRSF PIRSF000410 1 280 2.7E-95 T 26-04-2016 IPR026024 Chemotaxis protein methyltransferase CheR RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 PANTHER PTHR24422:SF13 13 277 4.4E-106 T 26-04-2016 RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 Pfam PF01739 CheR methyltransferase, SAM binding domain 88 274 4.0E-56 T 26-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 Gene3D G3DSA:1.10.155.10 13 86 5.7E-30 T 26-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 PRINTS PR00996 Glutamate methyltransferase family signature 239 262 1.6E-43 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 PRINTS PR00996 Glutamate methyltransferase family signature 81 93 1.6E-43 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 PRINTS PR00996 Glutamate methyltransferase family signature 220 234 1.6E-43 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 PRINTS PR00996 Glutamate methyltransferase family signature 148 164 1.6E-43 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 PRINTS PR00996 Glutamate methyltransferase family signature 115 135 1.6E-43 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 PRINTS PR00996 Glutamate methyltransferase family signature 42 55 1.6E-43 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 SUPERFAMILY SSF53335 88 277 1.4E-51 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS17280 7adc87a1bf4ba9ca11030136df4ac8ac 280 Pfam PF03705 CheR methyltransferase, all-alpha domain 21 71 6.2E-19 T 26-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RGE_RS04395 8cd43026df09227cbd07a0e4ad1711ea 186 PANTHER PTHR13256:SF43 5 185 2.1E-66 T 26-04-2016 RGE_RS04395 8cd43026df09227cbd07a0e4ad1711ea 186 Gene3D G3DSA:3.40.630.30 3 178 4.4E-59 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS04395 8cd43026df09227cbd07a0e4ad1711ea 186 SUPERFAMILY SSF55729 5 178 6.31E-54 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS04395 8cd43026df09227cbd07a0e4ad1711ea 186 PANTHER PTHR13256 5 185 2.1E-66 T 26-04-2016 RGE_RS04395 8cd43026df09227cbd07a0e4ad1711ea 186 Pfam PF13302 Acetyltransferase (GNAT) domain 13 153 8.5E-37 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 124 138 2.2E-10 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 166 2.2E-10 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 138 154 2.2E-10 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 Gene3D G3DSA:1.10.10.10 124 179 4.0E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 Pfam PF13426 PAS domain 17 115 1.6E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 ProSitePatterns PS00622 LuxR-type HTH domain signature. 138 165 - T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 6 117 7.7E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 Gene3D G3DSA:3.30.450.20 6 114 4.5E-11 T 26-04-2016 RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 PANTHER PTHR26402 125 175 1.0E-11 T 26-04-2016 RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 PANTHER PTHR26402:SF613 125 175 1.0E-11 T 26-04-2016 RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 Pfam PF00196 Bacterial regulatory proteins, luxR family 124 176 1.2E-14 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 SUPERFAMILY SSF55785 6 113 1.27E-11 T 26-04-2016 IPR000014 PAS domain RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 SMART SM00421 121 178 2.9E-19 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS07905 6106de9f298deff80397b52e50de1dbf 181 SUPERFAMILY SSF46894 111 178 5.78E-17 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS14150 ec51c1fc94aaa3213de0ef4192db91c3 495 Gene3D G3DSA:3.40.50.2000 258 465 3.7E-72 T 26-04-2016 RGE_RS14150 ec51c1fc94aaa3213de0ef4192db91c3 495 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 6 484 2.1E-164 T 26-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 RGE_RS14150 ec51c1fc94aaa3213de0ef4192db91c3 495 PANTHER PTHR12526:SF17 5 487 1.3E-125 T 26-04-2016 RGE_RS14150 ec51c1fc94aaa3213de0ef4192db91c3 495 Pfam PF00534 Glycosyl transferases group 1 296 453 5.7E-18 T 26-04-2016 IPR001296 Glycosyl transferase, family 1 RGE_RS14150 ec51c1fc94aaa3213de0ef4192db91c3 495 SUPERFAMILY SSF53756 6 486 9.07E-115 T 26-04-2016 RGE_RS14150 ec51c1fc94aaa3213de0ef4192db91c3 495 PANTHER PTHR12526 5 487 1.3E-125 T 26-04-2016 RGE_RS14150 ec51c1fc94aaa3213de0ef4192db91c3 495 Pfam PF08323 Starch synthase catalytic domain 7 244 1.2E-70 T 26-04-2016 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 RGE_RS14150 ec51c1fc94aaa3213de0ef4192db91c3 495 Hamap MF_00484 Glycogen synthase [glgA]. 6 485 43.286 T 26-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 RGE_RS07500 9fd85174ec159581b5463abc7ca88b3f 148 Gene3D G3DSA:1.10.1510.10 1 90 2.3E-35 T 26-04-2016 RGE_RS07500 9fd85174ec159581b5463abc7ca88b3f 148 PANTHER PTHR28055 1 148 3.8E-50 T 26-04-2016 RGE_RS07500 9fd85174ec159581b5463abc7ca88b3f 148 Pfam PF09424 Yqey-like protein 4 146 1.3E-52 T 26-04-2016 IPR019004 Uncharacterised domain YOR215C, mitochondrial RGE_RS07500 9fd85174ec159581b5463abc7ca88b3f 148 PANTHER PTHR28055:SF1 1 148 3.8E-50 T 26-04-2016 RGE_RS07500 9fd85174ec159581b5463abc7ca88b3f 148 SUPERFAMILY SSF89095 1 146 5.75E-41 T 26-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 RGE_RS07500 9fd85174ec159581b5463abc7ca88b3f 148 Gene3D G3DSA:1.10.10.410 91 147 1.2E-19 T 26-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RGE_RS12335 988367190ce187459b23e61770c4e4fe 260 SUPERFAMILY SSF52540 4 215 2.89E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12335 988367190ce187459b23e61770c4e4fe 260 Gene3D G3DSA:3.40.50.300 4 216 2.6E-62 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12335 988367190ce187459b23e61770c4e4fe 260 SMART SM00382 30 209 7.1E-16 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS12335 988367190ce187459b23e61770c4e4fe 260 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS12335 988367190ce187459b23e61770c4e4fe 260 Pfam PF00005 ABC transporter 21 161 2.9E-29 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS12335 988367190ce187459b23e61770c4e4fe 260 PANTHER PTHR24220:SF564 5 208 5.3E-110 T 26-04-2016 RGE_RS12335 988367190ce187459b23e61770c4e4fe 260 PANTHER PTHR24220 5 208 5.3E-110 T 26-04-2016 RGE_RS18610 cbc2a8c57a566fba18e61501ccc4e8b2 563 PANTHER PTHR12216:SF3 12 560 0.0 T 26-04-2016 RGE_RS18610 cbc2a8c57a566fba18e61501ccc4e8b2 563 Gene3D G3DSA:3.40.1770.10 364 559 2.3E-156 T 26-04-2016 RGE_RS18610 cbc2a8c57a566fba18e61501ccc4e8b2 563 Gene3D G3DSA:3.40.1770.10 13 143 2.3E-156 T 26-04-2016 RGE_RS18610 cbc2a8c57a566fba18e61501ccc4e8b2 563 ProSitePatterns PS01233 Urocanase signature. 446 461 - T 26-04-2016 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RGE_RS18610 cbc2a8c57a566fba18e61501ccc4e8b2 563 Gene3D G3DSA:3.40.50.10730 144 353 3.0E-89 T 26-04-2016 RGE_RS18610 cbc2a8c57a566fba18e61501ccc4e8b2 563 Hamap MF_00577 Urocanate hydratase [hutU]. 6 560 49.473 T 26-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RGE_RS18610 cbc2a8c57a566fba18e61501ccc4e8b2 563 Pfam PF01175 Urocanase 14 551 2.2E-252 T 26-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RGE_RS18610 cbc2a8c57a566fba18e61501ccc4e8b2 563 SUPERFAMILY SSF111326 11 559 3.79E-250 T 26-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RGE_RS18610 cbc2a8c57a566fba18e61501ccc4e8b2 563 PANTHER PTHR12216 12 560 0.0 T 26-04-2016 RGE_RS18610 cbc2a8c57a566fba18e61501ccc4e8b2 563 TIGRFAM TIGR01228 hutU: urocanate hydratase 14 558 7.5E-285 T 26-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RGE_RS18610 cbc2a8c57a566fba18e61501ccc4e8b2 563 PIRSF PIRSF001423 1 562 8.2E-285 T 26-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RGE_RS13005 4688e5c0c264a5e76c5a01bdf3da857b 347 Gene3D G3DSA:1.25.40.10 66 136 1.5E-15 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS13005 4688e5c0c264a5e76c5a01bdf3da857b 347 Pfam PF01464 Transglycosylase SLT domain 205 297 9.7E-27 T 26-04-2016 IPR008258 Transglycosylase SLT domain 1 RGE_RS13005 4688e5c0c264a5e76c5a01bdf3da857b 347 Gene3D G3DSA:1.10.530.10 192 313 2.5E-42 T 26-04-2016 RGE_RS13005 4688e5c0c264a5e76c5a01bdf3da857b 347 Pfam PF08238 Sel1 repeat 68 91 0.0019 T 26-04-2016 IPR006597 Sel1-like repeat RGE_RS13005 4688e5c0c264a5e76c5a01bdf3da857b 347 Pfam PF08238 Sel1 repeat 95 129 2.9E-4 T 26-04-2016 IPR006597 Sel1-like repeat RGE_RS13005 4688e5c0c264a5e76c5a01bdf3da857b 347 SUPERFAMILY SSF81901 64 134 1.11E-12 T 26-04-2016 RGE_RS13005 4688e5c0c264a5e76c5a01bdf3da857b 347 PANTHER PTHR21666 179 311 1.4E-34 T 26-04-2016 RGE_RS13005 4688e5c0c264a5e76c5a01bdf3da857b 347 SUPERFAMILY SSF53955 178 314 1.06E-41 T 26-04-2016 IPR023346 Lysozyme-like domain RGE_RS13005 4688e5c0c264a5e76c5a01bdf3da857b 347 SMART SM00671 95 130 8.5E-7 T 26-04-2016 IPR006597 Sel1-like repeat RGE_RS13005 4688e5c0c264a5e76c5a01bdf3da857b 347 SMART SM00671 59 94 0.3 T 26-04-2016 IPR006597 Sel1-like repeat RGE_RS13005 4688e5c0c264a5e76c5a01bdf3da857b 347 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 216 244 - T 26-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RGE_RS06560 c736be4f14401808b2edd46f16953e91 289 SUPERFAMILY SSF54001 59 159 9.32E-5 T 26-04-2016 RGE_RS06560 c736be4f14401808b2edd46f16953e91 289 Pfam PF13371 Tetratricopeptide repeat 206 278 4.2E-23 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS06560 c736be4f14401808b2edd46f16953e91 289 PANTHER PTHR31350:SF1 27 270 3.0E-43 T 26-04-2016 RGE_RS06560 c736be4f14401808b2edd46f16953e91 289 Gene3D G3DSA:1.25.40.10 180 277 1.2E-6 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS06560 c736be4f14401808b2edd46f16953e91 289 Pfam PF13369 Transglutaminase-like superfamily 46 204 1.8E-48 T 26-04-2016 IPR032698 Protein SirB1, N-terminal RGE_RS06560 c736be4f14401808b2edd46f16953e91 289 PANTHER PTHR31350 27 270 3.0E-43 T 26-04-2016 RGE_RS06560 c736be4f14401808b2edd46f16953e91 289 SUPERFAMILY SSF48452 179 280 2.88E-5 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 Pfam PF02254 TrkA-N domain 237 352 4.3E-25 T 26-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 Pfam PF02254 TrkA-N domain 3 105 9.8E-26 T 26-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 SUPERFAMILY SSF51735 235 378 2.15E-30 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 Pfam PF02080 TrkA-C domain 392 465 5.5E-8 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 Pfam PF02080 TrkA-C domain 157 223 3.9E-9 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 SUPERFAMILY SSF51735 1 152 4.31E-32 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 Gene3D G3DSA:3.40.50.720 235 378 4.2E-38 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 Gene3D G3DSA:3.40.50.720 1 151 2.6E-42 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 3.0E-23 T 26-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 3.0E-23 T 26-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 3.0E-23 T 26-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 3.0E-23 T 26-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 3.0E-23 T 26-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 Gene3D G3DSA:3.30.70.1450 157 226 2.7E-7 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 PANTHER PTHR13789:SF225 430 436 9.3E-46 T 26-04-2016 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 PANTHER PTHR13789:SF225 1 170 9.3E-46 T 26-04-2016 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 PANTHER PTHR13789 430 436 9.3E-46 T 26-04-2016 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 PANTHER PTHR13789 1 170 9.3E-46 T 26-04-2016 RGE_RS21200 b99bfa46ae211849df6c0e16b5e3a0c5 473 SUPERFAMILY SSF116726 137 223 1.09E-9 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS06550 85ab36124805f27a742df199bd9f4885 100 PANTHER PTHR33398 6 100 5.5E-28 T 26-04-2016 RGE_RS06550 85ab36124805f27a742df199bd9f4885 100 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 95 15.857 T 26-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06550 85ab36124805f27a742df199bd9f4885 100 PANTHER PTHR33398:SF1 6 100 5.5E-28 T 26-04-2016 RGE_RS06550 85ab36124805f27a742df199bd9f4885 100 SUPERFAMILY SSF46992 15 96 3.66E-27 T 26-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06550 85ab36124805f27a742df199bd9f4885 100 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 22 80 4.0E-19 T 26-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06550 85ab36124805f27a742df199bd9f4885 100 Gene3D G3DSA:1.20.58.110 15 97 2.6E-27 T 26-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06550 85ab36124805f27a742df199bd9f4885 100 TIGRFAM TIGR00029 S20: ribosomal protein bS20 15 96 1.7E-22 T 26-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06550 85ab36124805f27a742df199bd9f4885 100 Pfam PF01649 Ribosomal protein S20 15 94 1.9E-24 T 26-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 Pfam PF00106 short chain dehydrogenase 4 195 1.2E-47 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 Gene3D G3DSA:3.40.50.720 2 205 3.1E-59 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 PANTHER PTHR24322 154 179 5.2E-42 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 PANTHER PTHR24322 7 138 5.2E-42 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.6E-23 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 2.6E-23 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.6E-23 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.6E-23 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.6E-23 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 SUPERFAMILY SSF51735 1 206 7.68E-56 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 5.0E-9 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 5.0E-9 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06520 c1433b492e149e4f52538916be060cc3 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 5.0E-9 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS22275 bd8e15711072ae2c63558884b46c0e63 269 SUPERFAMILY SSF53167 18 265 1.39E-73 T 26-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RGE_RS22275 bd8e15711072ae2c63558884b46c0e63 269 PANTHER PTHR11904:SF9 19 263 9.2E-89 T 26-04-2016 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|UniPathway: UPA00606 RGE_RS22275 bd8e15711072ae2c63558884b46c0e63 269 PIRSF PIRSF000477 1 266 7.3E-84 T 26-04-2016 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|UniPathway: UPA00606 RGE_RS22275 bd8e15711072ae2c63558884b46c0e63 269 Pfam PF01048 Phosphorylase superfamily 21 263 5.6E-47 T 26-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RGE_RS22275 bd8e15711072ae2c63558884b46c0e63 269 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 21 261 1.9E-84 T 26-04-2016 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|UniPathway: UPA00606 RGE_RS22275 bd8e15711072ae2c63558884b46c0e63 269 PANTHER PTHR11904 19 263 9.2E-89 T 26-04-2016 IPR001369 PNP/MTAP phosphorylase RGE_RS22275 bd8e15711072ae2c63558884b46c0e63 269 Gene3D G3DSA:3.40.50.1580 8 263 8.8E-84 T 26-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 470 1.4E-157 T 26-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PANTHER PTHR22912:SF131 1 465 1.1E-221 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PANTHER PTHR22912 1 465 1.1E-221 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 Gene3D G3DSA:3.30.390.30 341 469 1.8E-47 T 26-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PIRSF PIRSF000350 1 471 2.5E-81 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 Gene3D G3DSA:3.50.50.60 4 146 2.1E-37 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 Gene3D G3DSA:3.50.50.60 147 340 1.5E-52 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 285 3.8E-75 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 45 60 3.8E-75 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 429 3.8E-75 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 155 3.8E-75 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 3.8E-75 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 349 370 3.8E-75 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 182 207 3.8E-75 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 3.8E-75 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 436 456 3.8E-75 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 SUPERFAMILY SSF55424 349 469 8.59E-41 T 26-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 334 1.6E-69 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 2.1E-42 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.1E-42 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 182 200 2.1E-42 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 2.1E-42 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 286 2.1E-42 T 26-04-2016 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 SUPERFAMILY SSF51905 1 344 1.94E-60 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13485 5459f3bf4836b81eab73bb216832fc72 472 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 353 462 8.5E-37 T 26-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 Gene3D G3DSA:1.10.10.10 509 568 2.2E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 Pfam PF09106 Elongation factor SelB, winged helix 441 500 3.9E-17 T 26-04-2016 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 SUPERFAMILY SSF52540 2 194 7.77E-38 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 Gene3D G3DSA:3.40.50.300 3 146 1.5E-38 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 PRINTS PR00315 GTP-binding elongation factor signature 70 81 8.4E-7 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 PRINTS PR00315 GTP-binding elongation factor signature 54 64 8.4E-7 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 PRINTS PR00315 GTP-binding elongation factor signature 107 116 8.4E-7 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 PRINTS PR00315 GTP-binding elongation factor signature 2 15 8.4E-7 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 SUPERFAMILY SSF46785 507 569 5.37E-13 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 Gene3D G3DSA:1.10.10.10 586 631 4.5E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 631 2.0E-129 T 26-04-2016 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 SUPERFAMILY SSF46785 431 505 1.55E-12 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 Gene3D G3DSA:2.40.30.10 176 299 1.9E-28 T 26-04-2016 RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 SUPERFAMILY SSF50447 173 262 3.33E-21 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 SUPERFAMILY SSF50465 269 365 2.88E-17 T 26-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 SUPERFAMILY SSF46785 587 631 4.63E-12 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 PANTHER PTHR23115:SF129 1 394 9.7E-123 T 26-04-2016 RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 Gene3D G3DSA:1.10.10.10 431 501 7.2E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 Pfam PF00009 Elongation factor Tu GTP binding domain 2 131 3.5E-28 T 26-04-2016 RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 Pfam PF03144 Elongation factor Tu domain 2 193 259 2.4E-11 T 26-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 Pfam PF09107 Elongation factor SelB, winged helix 586 630 4.9E-19 T 26-04-2016 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 26 41 - T 26-04-2016 IPR031157 Tr-type G domain, conserved site RGE_RS05595 34650f8d2b7bb50c535bc36f7d5941ab 645 PANTHER PTHR23115 1 394 9.7E-123 T 26-04-2016 RGE_RS22485 802ff72d859009ed324975f8ffa73710 242 PANTHER PTHR30027 1 242 1.8E-66 T 26-04-2016 RGE_RS22485 802ff72d859009ed324975f8ffa73710 242 SUPERFAMILY SSF88697 3 68 1.52E-12 T 26-04-2016 IPR015947 PUA-like domain RGE_RS22485 802ff72d859009ed324975f8ffa73710 242 Pfam PF04452 RNA methyltransferase 23 237 8.3E-59 T 26-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS22485 802ff72d859009ed324975f8ffa73710 242 SUPERFAMILY SSF75217 73 238 8.37E-45 T 26-04-2016 IPR029028 Alpha/beta knot methyltransferases RGE_RS22485 802ff72d859009ed324975f8ffa73710 242 PANTHER PTHR30027:SF3 1 242 1.8E-66 T 26-04-2016 RGE_RS22485 802ff72d859009ed324975f8ffa73710 242 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 15 235 2.1E-46 T 26-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS22485 802ff72d859009ed324975f8ffa73710 242 Gene3D G3DSA:3.40.1280.10 4 238 1.2E-72 T 26-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RGE_RS22485 802ff72d859009ed324975f8ffa73710 242 PIRSF PIRSF015601 1 241 1.4E-48 T 26-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS03595 d5a16969a82812df49ba3b5b9b87a837 507 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 4 458 3.6E-98 T 26-04-2016 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 RGE_RS03595 d5a16969a82812df49ba3b5b9b87a837 507 PANTHER PTHR31650 1 470 2.7E-48 T 26-04-2016 RGE_RS03595 d5a16969a82812df49ba3b5b9b87a837 507 SUPERFAMILY SSF52777 37 175 8.23E-6 T 26-04-2016 RGE_RS03595 d5a16969a82812df49ba3b5b9b87a837 507 Pfam PF06974 Protein of unknown function (DUF1298) 312 453 9.1E-22 T 26-04-2016 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 RGE_RS03595 d5a16969a82812df49ba3b5b9b87a837 507 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 4 259 4.1E-48 T 26-04-2016 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 RGE_RS03595 d5a16969a82812df49ba3b5b9b87a837 507 PANTHER PTHR31650:SF3 1 470 2.7E-48 T 26-04-2016 RGE_RS04330 e24e116dedf4f3e8ad840250866888ea 341 PANTHER PTHR34824 1 341 1.2E-94 T 26-04-2016 RGE_RS04330 e24e116dedf4f3e8ad840250866888ea 341 Gene3D G3DSA:3.30.450.40 178 340 4.3E-39 T 26-04-2016 IPR029016 GAF domain-like RGE_RS04330 e24e116dedf4f3e8ad840250866888ea 341 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 3 337 2.2E-89 T 26-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RGE_RS04330 e24e116dedf4f3e8ad840250866888ea 341 Pfam PF01628 HrcA protein C terminal domain 107 324 4.1E-58 T 26-04-2016 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 RGE_RS04330 e24e116dedf4f3e8ad840250866888ea 341 SUPERFAMILY SSF46785 1 81 6.48E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04330 e24e116dedf4f3e8ad840250866888ea 341 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 1 331 27.639 T 26-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RGE_RS04330 e24e116dedf4f3e8ad840250866888ea 341 Pfam PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 2 73 7.1E-7 T 26-04-2016 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain GO:0003677|GO:0006355 RGE_RS04330 e24e116dedf4f3e8ad840250866888ea 341 SUPERFAMILY SSF55781 71 340 3.14E-59 T 26-04-2016 IPR029016 GAF domain-like RGE_RS04330 e24e116dedf4f3e8ad840250866888ea 341 PIRSF PIRSF005485 1 341 8.1E-106 T 26-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RGE_RS04330 e24e116dedf4f3e8ad840250866888ea 341 Gene3D G3DSA:1.10.10.10 1 83 1.2E-36 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07485 86ca04e384775c06898acd3cc4ac079b 561 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 14 514 7.9E-120 T 26-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RGE_RS07485 86ca04e384775c06898acd3cc4ac079b 561 PANTHER PTHR33362 9 218 1.9E-201 T 26-04-2016 RGE_RS07485 86ca04e384775c06898acd3cc4ac079b 561 PANTHER PTHR33362 289 533 1.9E-201 T 26-04-2016 RGE_RS07485 86ca04e384775c06898acd3cc4ac079b 561 PANTHER PTHR33362:SF7 9 218 1.9E-201 T 26-04-2016 RGE_RS07485 86ca04e384775c06898acd3cc4ac079b 561 PANTHER PTHR33362:SF7 289 533 1.9E-201 T 26-04-2016 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 ProSitePatterns PS00306 Caseins alpha/beta signature. 9 16 - T 26-04-2016 IPR031305 Casein alpha/beta, conserved site RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 PANTHER PTHR24423 336 583 6.6E-70 T 26-04-2016 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 SUPERFAMILY SSF55874 421 579 4.19E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 472 580 2.9E-19 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 PANTHER PTHR24423:SF505 336 583 6.6E-70 T 26-04-2016 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 Gene3D G3DSA:3.30.565.10 430 578 5.3E-42 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 SMART SM00387 471 581 2.3E-35 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 Pfam PF00512 His Kinase A (phospho-acceptor) domain 360 426 1.6E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 SUPERFAMILY SSF47384 347 425 1.22E-9 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 526 1.3E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 565 578 1.3E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 559 1.3E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 530 540 1.3E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 23 257 7.6E-32 T 26-04-2016 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 Gene3D G3DSA:3.40.190.10 110 213 1.8E-5 T 26-04-2016 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 SUPERFAMILY SSF53850 19 272 1.99E-9 T 26-04-2016 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 SMART SM00388 359 429 1.3E-4 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS14055 08bab2bdbd2f53e4caf853bf2a88403c 585 Gene3D G3DSA:1.10.287.130 361 417 6.5E-5 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS12405 67e2b6771d32abec8836dcb296c165d5 277 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 258 3.1E-51 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS12405 67e2b6771d32abec8836dcb296c165d5 277 Gene3D G3DSA:3.40.190.10 116 219 9.4E-19 T 26-04-2016 RGE_RS12405 67e2b6771d32abec8836dcb296c165d5 277 PANTHER PTHR18966:SF191 23 262 1.8E-44 T 26-04-2016 RGE_RS12405 67e2b6771d32abec8836dcb296c165d5 277 PANTHER PTHR18966 23 262 1.8E-44 T 26-04-2016 RGE_RS12405 67e2b6771d32abec8836dcb296c165d5 277 SUPERFAMILY SSF53850 8 260 1.84E-57 T 26-04-2016 RGE_RS12405 67e2b6771d32abec8836dcb296c165d5 277 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 61 74 - T 26-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 RGE_RS12405 67e2b6771d32abec8836dcb296c165d5 277 Gene3D G3DSA:3.40.190.10 220 260 5.5E-30 T 26-04-2016 RGE_RS12405 67e2b6771d32abec8836dcb296c165d5 277 Gene3D G3DSA:3.40.190.10 34 115 5.5E-30 T 26-04-2016 RGE_RS12405 67e2b6771d32abec8836dcb296c165d5 277 SMART SM00062 37 260 6.9E-58 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS22430 d3ab6be80673de58af1d971fc440af43 305 PANTHER PTHR30385 10 282 5.9E-19 T 26-04-2016 RGE_RS22430 d3ab6be80673de58af1d971fc440af43 305 SUPERFAMILY SSF88659 152 237 3.05E-11 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS22430 d3ab6be80673de58af1d971fc440af43 305 Gene3D G3DSA:1.10.10.10 183 234 4.8E-6 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22430 d3ab6be80673de58af1d971fc440af43 305 Pfam PF04545 Sigma-70, region 4 189 234 1.1E-8 T 26-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS22430 d3ab6be80673de58af1d971fc440af43 305 SUPERFAMILY SSF88946 10 89 2.55E-9 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS22430 d3ab6be80673de58af1d971fc440af43 305 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 235 7.6E-20 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS06470 82e5c8b2f4fc42b40fbcb62628365c0d 227 PANTHER PTHR14097 1 226 5.3E-43 T 26-04-2016 RGE_RS06470 82e5c8b2f4fc42b40fbcb62628365c0d 227 Gene3D G3DSA:3.40.50.720 13 217 2.4E-37 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06470 82e5c8b2f4fc42b40fbcb62628365c0d 227 Pfam PF13460 NAD(P)H-binding 16 204 3.6E-7 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06470 82e5c8b2f4fc42b40fbcb62628365c0d 227 SUPERFAMILY SSF51735 13 210 4.42E-34 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15005 dc4dcba47fd295c9945b2406a5445344 408 PANTHER PTHR11751 20 405 4.3E-131 T 26-04-2016 RGE_RS15005 dc4dcba47fd295c9945b2406a5445344 408 Pfam PF00155 Aminotransferase class I and II 38 397 2.3E-70 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS15005 dc4dcba47fd295c9945b2406a5445344 408 PANTHER PTHR11751:SF306 20 405 4.3E-131 T 26-04-2016 RGE_RS15005 dc4dcba47fd295c9945b2406a5445344 408 SUPERFAMILY SSF53383 10 402 6.33E-105 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS15005 dc4dcba47fd295c9945b2406a5445344 408 Gene3D G3DSA:3.90.1150.10 281 405 5.5E-37 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS15005 dc4dcba47fd295c9945b2406a5445344 408 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 241 254 - T 26-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RGE_RS15005 dc4dcba47fd295c9945b2406a5445344 408 Gene3D G3DSA:3.40.640.10 51 280 5.0E-67 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS01035 c3d1697fb30dba3802814f2133b7be1f 210 Pfam PF03458 UPF0126 domain 10 79 3.5E-13 T 26-04-2016 IPR005115 Uncharacterised domain UPF0126 RGE_RS01035 c3d1697fb30dba3802814f2133b7be1f 210 Pfam PF03458 UPF0126 domain 97 170 7.5E-21 T 26-04-2016 IPR005115 Uncharacterised domain UPF0126 RGE_RS01035 c3d1697fb30dba3802814f2133b7be1f 210 PANTHER PTHR30506:SF3 1 206 1.7E-44 T 26-04-2016 RGE_RS01035 c3d1697fb30dba3802814f2133b7be1f 210 PANTHER PTHR30506 1 206 1.7E-44 T 26-04-2016 RGE_RS15455 ca369f949f49d4930ec06f554d384322 345 PANTHER PTHR10859:SF81 4 329 4.1E-116 T 26-04-2016 RGE_RS15455 ca369f949f49d4930ec06f554d384322 345 PANTHER PTHR10859 4 329 4.1E-116 T 26-04-2016 RGE_RS15455 ca369f949f49d4930ec06f554d384322 345 SUPERFAMILY SSF53448 18 223 1.85E-38 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS15455 ca369f949f49d4930ec06f554d384322 345 Pfam PF00535 Glycosyl transferase family 2 24 153 6.5E-31 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS15455 ca369f949f49d4930ec06f554d384322 345 Gene3D G3DSA:3.90.550.10 21 190 4.5E-25 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS02350 f711428a0d6fbc97b4982083fa11bb9b 261 Pfam PF00814 Glycoprotease family 54 173 1.0E-22 T 26-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RGE_RS02350 f711428a0d6fbc97b4982083fa11bb9b 261 Gene3D G3DSA:3.30.420.40 20 153 1.7E-31 T 26-04-2016 RGE_RS02350 f711428a0d6fbc97b4982083fa11bb9b 261 SUPERFAMILY SSF53067 133 235 5.05E-14 T 26-04-2016 RGE_RS02350 f711428a0d6fbc97b4982083fa11bb9b 261 PANTHER PTHR11735:SF11 1 160 1.6E-29 T 26-04-2016 RGE_RS02350 f711428a0d6fbc97b4982083fa11bb9b 261 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 21 237 2.4E-50 T 26-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 RGE_RS02350 f711428a0d6fbc97b4982083fa11bb9b 261 SUPERFAMILY SSF53067 21 120 1.42E-20 T 26-04-2016 RGE_RS02350 f711428a0d6fbc97b4982083fa11bb9b 261 PANTHER PTHR11735 1 160 1.6E-29 T 26-04-2016 RGE_RS07840 7f32febc0df6c737c36003f31016d975 962 Gene3D G3DSA:3.40.640.10 506 739 5.6E-40 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS07840 7f32febc0df6c737c36003f31016d975 962 Gene3D G3DSA:3.40.640.10 94 308 2.3E-15 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS07840 7f32febc0df6c737c36003f31016d975 962 SUPERFAMILY SSF53383 21 444 1.41E-103 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS07840 7f32febc0df6c737c36003f31016d975 962 SUPERFAMILY SSF53383 934 957 5.11E-94 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS07840 7f32febc0df6c737c36003f31016d975 962 SUPERFAMILY SSF53383 480 891 5.11E-94 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS07840 7f32febc0df6c737c36003f31016d975 962 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 12 961 24.737 T 26-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 RGE_RS07840 7f32febc0df6c737c36003f31016d975 962 PANTHER PTHR11773:SF1 11 962 0.0 T 26-04-2016 RGE_RS07840 7f32febc0df6c737c36003f31016d975 962 PANTHER PTHR11773 11 962 0.0 T 26-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 RGE_RS07840 7f32febc0df6c737c36003f31016d975 962 Pfam PF02347 Glycine cleavage system P-protein 21 443 8.0E-173 T 26-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 RGE_RS07840 7f32febc0df6c737c36003f31016d975 962 Pfam PF02347 Glycine cleavage system P-protein 621 738 2.7E-8 T 26-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 RGE_RS07840 7f32febc0df6c737c36003f31016d975 962 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 21 955 0.0 T 26-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 PANTHER PTHR10359 6 271 1.7E-80 T 26-04-2016 RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 SUPERFAMILY SSF55811 220 346 4.68E-19 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 26-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 Gene3D G3DSA:1.10.1670.10 124 224 2.2E-38 T 26-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 36 154 6.8E-18 T 26-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 PANTHER PTHR10359:SF1 6 271 1.7E-80 T 26-04-2016 RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 SMART SM00525 191 211 5.9E-4 T 26-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 Gene3D G3DSA:3.90.79.10 231 346 1.5E-16 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 SMART SM00478 39 190 2.2E-47 T 26-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 Pfam PF14815 NUDIX domain 236 346 6.1E-19 T 26-04-2016 IPR029119 MutY, C-terminal RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 7 275 3.9E-104 T 26-04-2016 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 SUPERFAMILY SSF48150 6 223 1.73E-74 T 26-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 Gene3D G3DSA:1.10.340.30 22 123 7.7E-45 T 26-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RGE_RS04305 b6974fd134f8558089f8be6e47e1826d 357 Pfam PF00633 Helix-hairpin-helix motif 100 128 6.6E-6 T 26-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 RGE_RS06695 59ab1acbf58301a69491725659502274 393 SUPERFAMILY SSF53187 310 381 8.57E-53 T 26-04-2016 RGE_RS06695 59ab1acbf58301a69491725659502274 393 SUPERFAMILY SSF53187 10 180 8.57E-53 T 26-04-2016 RGE_RS06695 59ab1acbf58301a69491725659502274 393 SUPERFAMILY SSF55031 181 289 1.15E-18 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS06695 59ab1acbf58301a69491725659502274 393 PANTHER PTHR11014:SF80 14 376 7.6E-90 T 26-04-2016 RGE_RS06695 59ab1acbf58301a69491725659502274 393 Pfam PF01546 Peptidase family M20/M25/M40 74 381 4.7E-31 T 26-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RGE_RS06695 59ab1acbf58301a69491725659502274 393 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 16 381 8.3E-109 T 26-04-2016 IPR010169 Acetylornithine deacetylase (ArgE) GO:0005737|GO:0006526|GO:0008270|GO:0008777|GO:0050897 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154|UniPathway: UPA00068 RGE_RS06695 59ab1acbf58301a69491725659502274 393 Gene3D G3DSA:3.40.630.10 329 381 3.1E-56 T 26-04-2016 RGE_RS06695 59ab1acbf58301a69491725659502274 393 Gene3D G3DSA:3.40.630.10 11 189 3.1E-56 T 26-04-2016 RGE_RS06695 59ab1acbf58301a69491725659502274 393 Gene3D G3DSA:3.30.70.360 190 289 7.1E-22 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS06695 59ab1acbf58301a69491725659502274 393 PANTHER PTHR11014 14 376 7.6E-90 T 26-04-2016 RGE_RS06695 59ab1acbf58301a69491725659502274 393 Pfam PF07687 Peptidase dimerisation domain 178 288 1.9E-20 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS09785 fc7d9879c3c8f85635d602ce240c30eb 397 PANTHER PTHR11808:SF15 15 397 2.4E-200 T 26-04-2016 RGE_RS09785 fc7d9879c3c8f85635d602ce240c30eb 397 PANTHER PTHR11808 15 397 2.4E-200 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS09785 fc7d9879c3c8f85635d602ce240c30eb 397 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 200 214 - T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS09785 fc7d9879c3c8f85635d602ce240c30eb 397 Gene3D G3DSA:3.40.640.10 15 260 1.3E-90 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS09785 fc7d9879c3c8f85635d602ce240c30eb 397 PIRSF PIRSF001434 1 397 2.8E-144 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS09785 fc7d9879c3c8f85635d602ce240c30eb 397 Gene3D G3DSA:3.90.1150.10 261 396 4.2E-57 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS09785 fc7d9879c3c8f85635d602ce240c30eb 397 SUPERFAMILY SSF53383 17 395 4.44E-117 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS09785 fc7d9879c3c8f85635d602ce240c30eb 397 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 17 394 3.6E-150 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS12430 d96a41b236124a7ff4e77af299a00ab4 148 PANTHER PTHR13355:SF8 1 124 6.5E-15 T 26-04-2016 RGE_RS12430 d96a41b236124a7ff4e77af299a00ab4 148 PANTHER PTHR13355 1 124 6.5E-15 T 26-04-2016 RGE_RS12430 d96a41b236124a7ff4e77af299a00ab4 148 Pfam PF13673 Acetyltransferase (GNAT) domain 43 129 2.9E-9 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS12430 d96a41b236124a7ff4e77af299a00ab4 148 Gene3D G3DSA:3.40.630.30 2 139 1.0E-21 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS12430 d96a41b236124a7ff4e77af299a00ab4 148 SUPERFAMILY SSF55729 2 136 1.32E-20 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 844 957 5.4E-25 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Pfam PF13188 PAS domain 576 621 5.0E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 PANTHER PTHR24423 729 963 9.0E-189 T 26-04-2016 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SUPERFAMILY SSF52172 1129 1247 3.7E-36 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Gene3D G3DSA:3.30.565.10 798 956 9.0E-44 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 PANTHER PTHR24423:SF486 132 703 9.0E-189 T 26-04-2016 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SUPERFAMILY SSF47226 1273 1358 6.93E-17 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SUPERFAMILY SSF47226 1225 1238 6.93E-17 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 PANTHER PTHR24423:SF486 729 963 9.0E-189 T 26-04-2016 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SUPERFAMILY SSF55785 437 562 5.41E-19 T 26-04-2016 IPR000014 PAS domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Pfam PF00989 PAS fold 326 437 1.4E-15 T 26-04-2016 IPR013767 PAS fold GO:0006355 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Gene3D G3DSA:1.10.287.130 724 794 2.8E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Gene3D G3DSA:3.30.450.20 319 436 6.8E-24 T 26-04-2016 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SUPERFAMILY SSF55785 561 685 5.58E-22 T 26-04-2016 IPR000014 PAS domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SMART SM00086 522 564 23.0 T 26-04-2016 IPR001610 PAC motif RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SMART SM00086 398 440 2.4E-9 T 26-04-2016 IPR001610 PAC motif RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SMART SM00086 648 688 0.0067 T 26-04-2016 IPR001610 PAC motif RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SMART SM00387 844 960 4.1E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Pfam PF00512 His Kinase A (phospho-acceptor) domain 733 798 8.2E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SMART SM00091 452 516 120.0 T 26-04-2016 IPR000014 PAS domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SMART SM00091 576 646 7.1E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SMART SM00091 325 392 8.7E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SUPERFAMILY SSF55785 316 438 3.14E-24 T 26-04-2016 IPR000014 PAS domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Gene3D G3DSA:3.40.50.2300 1129 1247 1.7E-37 T 26-04-2016 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 322 447 9.9E-22 T 26-04-2016 IPR000014 PAS domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 572 695 1.7E-16 T 26-04-2016 IPR000014 PAS domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 448 571 7.9E-11 T 26-04-2016 IPR000014 PAS domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 PANTHER PTHR24423:SF486 1026 1247 9.0E-189 T 26-04-2016 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Gene3D G3DSA:3.30.450.20 437 561 3.7E-19 T 26-04-2016 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Gene3D G3DSA:3.30.450.20 562 685 9.6E-23 T 26-04-2016 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 PRINTS PR00344 Bacterial sensor protein C-terminal signature 920 938 1.2E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 PRINTS PR00344 Bacterial sensor protein C-terminal signature 903 913 1.2E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 PRINTS PR00344 Bacterial sensor protein C-terminal signature 885 899 1.2E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 PRINTS PR00344 Bacterial sensor protein C-terminal signature 944 957 1.2E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SMART SM00448 1130 1242 4.7E-34 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SMART SM00448 980 1098 2.9E-20 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Pfam PF01627 Hpt domain 1294 1378 7.1E-9 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SUPERFAMILY SSF55874 787 955 6.02E-43 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SMART SM00388 733 798 4.4E-22 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Gene3D G3DSA:3.40.50.2300 977 1111 2.3E-24 T 26-04-2016 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SUPERFAMILY SSF52172 979 1110 1.57E-24 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 SUPERFAMILY SSF47384 717 800 1.73E-22 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Pfam PF08448 PAS fold 458 565 2.5E-8 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Pfam PF00072 Response regulator receiver domain 1132 1241 5.6E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Pfam PF00072 Response regulator receiver domain 983 1098 1.1E-12 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 PANTHER PTHR24423 132 703 9.0E-189 T 26-04-2016 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 PANTHER PTHR24423 1026 1247 9.0E-189 T 26-04-2016 RGE_RS23190 f8a2fa0e7e97e936b25464e5bfe64d17 1383 Gene3D G3DSA:1.20.120.160 1273 1378 2.7E-12 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS07175 10d1a80d1776ba1afe3ab5519ff18db7 652 SUPERFAMILY SSF53474 393 652 1.06E-71 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07175 10d1a80d1776ba1afe3ab5519ff18db7 652 PANTHER PTHR11731:SF140 102 148 1.1E-112 T 26-04-2016 RGE_RS07175 10d1a80d1776ba1afe3ab5519ff18db7 652 PANTHER PTHR11731:SF140 293 652 1.1E-112 T 26-04-2016 RGE_RS07175 10d1a80d1776ba1afe3ab5519ff18db7 652 Gene3D G3DSA:3.40.50.1820 341 652 1.1E-96 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07175 10d1a80d1776ba1afe3ab5519ff18db7 652 SUPERFAMILY SSF82171 55 395 1.65E-18 T 26-04-2016 RGE_RS07175 10d1a80d1776ba1afe3ab5519ff18db7 652 Pfam PF00326 Prolyl oligopeptidase family 438 652 2.1E-47 T 26-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RGE_RS07175 10d1a80d1776ba1afe3ab5519ff18db7 652 Gene3D G3DSA:2.120.10.30 58 301 7.3E-16 T 26-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RGE_RS07175 10d1a80d1776ba1afe3ab5519ff18db7 652 PANTHER PTHR11731 102 148 1.1E-112 T 26-04-2016 RGE_RS07175 10d1a80d1776ba1afe3ab5519ff18db7 652 PANTHER PTHR11731 293 652 1.1E-112 T 26-04-2016 RGE_RS17390 a78fd1efa226d409b4bb6d2b5e607894 206 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 5 183 7.1E-70 T 26-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RGE_RS17390 a78fd1efa226d409b4bb6d2b5e607894 206 Hamap MF_00328 Guanylate kinase [gmk]. 3 186 35.81 T 26-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RGE_RS17390 a78fd1efa226d409b4bb6d2b5e607894 206 PANTHER PTHR23117:SF13 1 188 1.2E-83 T 26-04-2016 RGE_RS17390 a78fd1efa226d409b4bb6d2b5e607894 206 SUPERFAMILY SSF52540 3 190 2.82E-65 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17390 a78fd1efa226d409b4bb6d2b5e607894 206 Gene3D G3DSA:3.40.50.300 87 199 6.2E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17390 a78fd1efa226d409b4bb6d2b5e607894 206 Gene3D G3DSA:3.40.50.300 3 18 6.2E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17390 a78fd1efa226d409b4bb6d2b5e607894 206 Pfam PF00625 Guanylate kinase 6 184 6.1E-48 T 26-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RGE_RS17390 a78fd1efa226d409b4bb6d2b5e607894 206 PANTHER PTHR23117 1 188 1.2E-83 T 26-04-2016 RGE_RS17390 a78fd1efa226d409b4bb6d2b5e607894 206 Gene3D G3DSA:3.40.50.300 19 40 4.7E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17390 a78fd1efa226d409b4bb6d2b5e607894 206 Gene3D G3DSA:3.30.63.10 41 86 1.2E-26 T 26-04-2016 RGE_RS17390 a78fd1efa226d409b4bb6d2b5e607894 206 ProSitePatterns PS00856 Guanylate kinase-like signature. 39 56 - T 26-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RGE_RS17390 a78fd1efa226d409b4bb6d2b5e607894 206 SMART SM00072 4 186 3.1E-54 T 26-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 SUPERFAMILY SSF51735 9 259 1.86E-79 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 PANTHER PTHR24322 165 197 2.5E-59 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 PANTHER PTHR24322 18 147 2.5E-59 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 257 1.3E-58 T 26-04-2016 RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 4.0E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 4.0E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 4.0E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 196 0.0011 T 26-04-2016 RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 5.3E-41 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 5.3E-41 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 5.3E-41 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 5.3E-41 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 5.3E-41 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 5.3E-41 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11895 524e9f0223e655eb2a9e31fff0b2ae67 262 Gene3D G3DSA:3.40.50.720 4 258 1.1E-85 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS09280 6b855488ee4a86ea892e7f3bc3ca0384 553 Pfam PF01546 Peptidase family M20/M25/M40 107 544 1.4E-15 T 26-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RGE_RS09280 6b855488ee4a86ea892e7f3bc3ca0384 553 SUPERFAMILY SSF55031 232 419 1.88E-7 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS09280 6b855488ee4a86ea892e7f3bc3ca0384 553 Gene3D G3DSA:3.30.70.360 246 338 6.5E-5 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS09280 6b855488ee4a86ea892e7f3bc3ca0384 553 PANTHER PTHR11014 372 428 3.4E-13 T 26-04-2016 RGE_RS09280 6b855488ee4a86ea892e7f3bc3ca0384 553 PANTHER PTHR11014 444 551 3.4E-13 T 26-04-2016 RGE_RS09280 6b855488ee4a86ea892e7f3bc3ca0384 553 PANTHER PTHR11014 96 221 3.4E-13 T 26-04-2016 RGE_RS09280 6b855488ee4a86ea892e7f3bc3ca0384 553 PANTHER PTHR11014 302 355 3.4E-13 T 26-04-2016 RGE_RS09280 6b855488ee4a86ea892e7f3bc3ca0384 553 SUPERFAMILY SSF53187 462 545 5.43E-30 T 26-04-2016 RGE_RS09280 6b855488ee4a86ea892e7f3bc3ca0384 553 SUPERFAMILY SSF53187 25 212 5.43E-30 T 26-04-2016 RGE_RS09280 6b855488ee4a86ea892e7f3bc3ca0384 553 Gene3D G3DSA:3.40.630.10 461 545 3.4E-29 T 26-04-2016 RGE_RS09280 6b855488ee4a86ea892e7f3bc3ca0384 553 Gene3D G3DSA:3.40.630.10 24 218 3.4E-29 T 26-04-2016 RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 26-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 26-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 Gene3D G3DSA:3.40.50.2300 2 122 7.3E-25 T 26-04-2016 RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 PANTHER PTHR32071 5 464 4.7E-178 T 26-04-2016 RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 Pfam PF00158 Sigma-54 interaction domain 142 308 3.6E-68 T 26-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 Pfam PF00072 Response regulator receiver domain 5 109 1.6E-19 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 SUPERFAMILY SSF52172 2 186 1.57E-34 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 Gene3D G3DSA:3.40.50.300 138 313 1.7E-58 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 Gene3D G3DSA:1.10.10.60 419 463 3.6E-13 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 SMART SM00448 2 112 2.2E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 353 362 - T 26-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 Gene3D G3DSA:1.10.8.60 314 384 5.0E-25 T 26-04-2016 RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 SUPERFAMILY SSF52540 141 382 2.02E-74 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 SMART SM00382 161 305 3.3E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 Pfam PF02954 Bacterial regulatory protein, Fis family 424 464 7.6E-10 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS12055 f7125a9c2470bf41cb4f65d25d6d4c0e 472 SUPERFAMILY SSF46689 353 464 3.44E-11 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS18905 176c6666f51fb0e4711e75c890a5ade8 382 SUPERFAMILY SSF53383 2 378 9.18E-79 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS18905 176c6666f51fb0e4711e75c890a5ade8 382 Gene3D G3DSA:3.40.640.10 23 274 1.7E-62 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS18905 176c6666f51fb0e4711e75c890a5ade8 382 PANTHER PTHR11601:SF32 1 378 4.6E-118 T 26-04-2016 RGE_RS18905 176c6666f51fb0e4711e75c890a5ade8 382 PANTHER PTHR11601 1 378 4.6E-118 T 26-04-2016 RGE_RS18905 176c6666f51fb0e4711e75c890a5ade8 382 Pfam PF00266 Aminotransferase class-V 23 375 1.9E-36 T 26-04-2016 IPR000192 Aminotransferase class V domain RGE_RS18905 176c6666f51fb0e4711e75c890a5ade8 382 Gene3D G3DSA:3.90.1150.10 275 378 4.2E-9 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS20065 614b29980d073e1085cc83d5a270897c 414 SUPERFAMILY SSF53901 4 256 6.55E-80 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS20065 614b29980d073e1085cc83d5a270897c 414 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 159 175 - T 26-04-2016 IPR018201 Beta-ketoacyl synthase, active site RGE_RS20065 614b29980d073e1085cc83d5a270897c 414 SUPERFAMILY SSF53901 218 413 2.11E-70 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS20065 614b29980d073e1085cc83d5a270897c 414 SMART SM00825 Beta-ketoacyl synthase 6 414 5.9E-18 T 26-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RGE_RS20065 614b29980d073e1085cc83d5a270897c 414 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 412 6.1E-199 T 26-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 RGE_RS20065 614b29980d073e1085cc83d5a270897c 414 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 259 371 4.9E-35 T 26-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RGE_RS20065 614b29980d073e1085cc83d5a270897c 414 PANTHER PTHR11712 1 413 1.4E-210 T 26-04-2016 RGE_RS20065 614b29980d073e1085cc83d5a270897c 414 PIRSF PIRSF000447 1 414 6.9E-187 T 26-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 RGE_RS20065 614b29980d073e1085cc83d5a270897c 414 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 251 7.7E-61 T 26-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RGE_RS20065 614b29980d073e1085cc83d5a270897c 414 Gene3D G3DSA:3.40.47.10 269 413 2.3E-58 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS20065 614b29980d073e1085cc83d5a270897c 414 Gene3D G3DSA:3.40.47.10 3 261 2.4E-82 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS17250 65bf54f6788c13b8912ecf41ec28851f 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 180 8.6E-18 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS17250 65bf54f6788c13b8912ecf41ec28851f 184 TIGRFAM TIGR02999 Sig-70_X6: RNA polymerase sigma factor, TIGR02999 family 2 182 1.5E-54 T 26-04-2016 IPR011517 RNA polymerase sigma-70 ECF-like RGE_RS17250 65bf54f6788c13b8912ecf41ec28851f 184 Pfam PF07638 ECF sigma factor 1 182 8.0E-44 T 26-04-2016 IPR011517 RNA polymerase sigma-70 ECF-like RGE_RS17250 65bf54f6788c13b8912ecf41ec28851f 184 Gene3D G3DSA:1.10.1740.10 5 107 8.3E-9 T 26-04-2016 RGE_RS17250 65bf54f6788c13b8912ecf41ec28851f 184 Gene3D G3DSA:1.10.10.10 129 183 6.0E-11 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17250 65bf54f6788c13b8912ecf41ec28851f 184 SUPERFAMILY SSF88659 107 183 2.8E-11 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS17250 65bf54f6788c13b8912ecf41ec28851f 184 SUPERFAMILY SSF88946 4 108 1.61E-10 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS17250 65bf54f6788c13b8912ecf41ec28851f 184 PANTHER PTHR30173:SF5 1 183 1.2E-40 T 26-04-2016 RGE_RS17250 65bf54f6788c13b8912ecf41ec28851f 184 PANTHER PTHR30173 1 183 1.2E-40 T 26-04-2016 RGE_RS11025 bdc0de3c704c8595897786fa901cdfa1 593 PANTHER PTHR11817:SF28 104 202 1.3E-140 T 26-04-2016 RGE_RS11025 bdc0de3c704c8595897786fa901cdfa1 593 PANTHER PTHR11817:SF28 315 590 1.3E-140 T 26-04-2016 RGE_RS11025 bdc0de3c704c8595897786fa901cdfa1 593 Pfam PF00224 Pyruvate kinase, barrel domain 298 578 1.2E-39 T 26-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS11025 bdc0de3c704c8595897786fa901cdfa1 593 Pfam PF00224 Pyruvate kinase, barrel domain 122 203 6.8E-9 T 26-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS11025 bdc0de3c704c8595897786fa901cdfa1 593 PANTHER PTHR11817 315 590 1.3E-140 T 26-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS11025 bdc0de3c704c8595897786fa901cdfa1 593 PANTHER PTHR11817 104 202 1.3E-140 T 26-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS11025 bdc0de3c704c8595897786fa901cdfa1 593 SUPERFAMILY SSF50800 317 409 8.72E-9 T 26-04-2016 IPR011037 Pyruvate kinase-like, insert domain RGE_RS11025 bdc0de3c704c8595897786fa901cdfa1 593 Gene3D G3DSA:3.20.20.60 123 195 1.1E-61 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS11025 bdc0de3c704c8595897786fa901cdfa1 593 Gene3D G3DSA:3.20.20.60 411 574 1.1E-61 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS11025 bdc0de3c704c8595897786fa901cdfa1 593 SUPERFAMILY SSF51621 104 196 7.68E-65 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS11025 bdc0de3c704c8595897786fa901cdfa1 593 SUPERFAMILY SSF51621 409 583 7.68E-65 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS11025 bdc0de3c704c8595897786fa901cdfa1 593 Gene3D G3DSA:2.40.33.10 344 410 7.9E-14 T 26-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RGE_RS08640 ea258a0352c90862091f52b0d58a892d 131 Gene3D G3DSA:1.10.10.690 10 125 2.0E-23 T 26-04-2016 IPR027405 YidB-like RGE_RS08640 ea258a0352c90862091f52b0d58a892d 131 Pfam PF06078 Bacterial protein of unknown function (DUF937) 15 108 2.9E-7 T 26-04-2016 IPR009282 Protein of unknown function DUF937 RGE_RS08640 ea258a0352c90862091f52b0d58a892d 131 SUPERFAMILY SSF140804 13 123 4.58E-19 T 26-04-2016 IPR027405 YidB-like RGE_RS19080 b3dcc908c95847308dcea3654c003b6d 393 PANTHER PTHR11751:SF401 12 393 9.5E-138 T 26-04-2016 RGE_RS19080 b3dcc908c95847308dcea3654c003b6d 393 Pfam PF00155 Aminotransferase class I and II 39 388 1.7E-58 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS19080 b3dcc908c95847308dcea3654c003b6d 393 Gene3D G3DSA:3.90.1150.10 261 391 2.2E-38 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS19080 b3dcc908c95847308dcea3654c003b6d 393 Gene3D G3DSA:3.40.640.10 53 260 9.8E-60 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS19080 b3dcc908c95847308dcea3654c003b6d 393 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 238 251 - T 26-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RGE_RS19080 b3dcc908c95847308dcea3654c003b6d 393 PANTHER PTHR11751 12 393 9.5E-138 T 26-04-2016 RGE_RS19080 b3dcc908c95847308dcea3654c003b6d 393 SUPERFAMILY SSF53383 1 392 1.24E-103 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS03375 970e48bbd86f409ff383324809618e29 308 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 19 301 10.128 T 26-04-2016 IPR002729 CRISPR-associated protein Cas1 RGE_RS03375 970e48bbd86f409ff383324809618e29 308 Pfam PF01867 CRISPR associated protein Cas1 133 239 3.8E-9 T 26-04-2016 IPR002729 CRISPR-associated protein Cas1 RGE_RS03375 970e48bbd86f409ff383324809618e29 308 TIGRFAM TIGR03638 cas1_ECOLI: CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI 10 276 1.4E-112 T 26-04-2016 IPR019851 CRISPR-associated protein Cas1, ECOLI subtype RGE_RS03375 970e48bbd86f409ff383324809618e29 308 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 135 242 9.2E-29 T 26-04-2016 IPR002729 CRISPR-associated protein Cas1 RGE_RS02335 3de256b88ce83baa9946ef17cae0e74f 219 Pfam PF03922 OmpW family 35 219 1.6E-25 T 26-04-2016 IPR005618 Outer membrane protein, OmpW GO:0019867 RGE_RS02335 3de256b88ce83baa9946ef17cae0e74f 219 PANTHER PTHR36920:SF1 1 219 2.8E-31 T 26-04-2016 RGE_RS02335 3de256b88ce83baa9946ef17cae0e74f 219 SUPERFAMILY SSF56925 64 219 1.26E-15 T 26-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RGE_RS02335 3de256b88ce83baa9946ef17cae0e74f 219 Gene3D G3DSA:2.40.160.20 33 219 2.7E-41 T 26-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RGE_RS02335 3de256b88ce83baa9946ef17cae0e74f 219 PANTHER PTHR36920 1 219 2.8E-31 T 26-04-2016 RGE_RS13535 85c225a145c6313bb1e6c9beadc58135 464 SUPERFAMILY SSF53383 96 463 2.16E-66 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS13535 85c225a145c6313bb1e6c9beadc58135 464 SMART SM00345 11 70 3.8E-15 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS13535 85c225a145c6313bb1e6c9beadc58135 464 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 70 5.6E-17 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS13535 85c225a145c6313bb1e6c9beadc58135 464 Gene3D G3DSA:3.90.1150.10 347 458 1.1E-9 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS13535 85c225a145c6313bb1e6c9beadc58135 464 Gene3D G3DSA:1.10.10.10 5 71 1.6E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13535 85c225a145c6313bb1e6c9beadc58135 464 Pfam PF00155 Aminotransferase class I and II 121 456 1.3E-15 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS13535 85c225a145c6313bb1e6c9beadc58135 464 Gene3D G3DSA:3.40.640.10 134 346 2.8E-40 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS13535 85c225a145c6313bb1e6c9beadc58135 464 SUPERFAMILY SSF46785 3 72 2.01E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13535 85c225a145c6313bb1e6c9beadc58135 464 PANTHER PTHR11751:SF314 86 463 1.2E-71 T 26-04-2016 RGE_RS13535 85c225a145c6313bb1e6c9beadc58135 464 PANTHER PTHR11751 86 463 1.2E-71 T 26-04-2016 RGE_RS13120 1b9f2fcb4b43f0ccb26c6126fa1faf17 446 Gene3D G3DSA:3.40.1160.10 24 294 3.8E-58 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS13120 1b9f2fcb4b43f0ccb26c6126fa1faf17 446 PIRSF PIRSF000423 2 445 3.7E-176 T 26-04-2016 IPR010167 Amino-acid N-acetyltransferase (ArgA) GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 RGE_RS13120 1b9f2fcb4b43f0ccb26c6126fa1faf17 446 PANTHER PTHR30602 9 446 7.3E-156 T 26-04-2016 RGE_RS13120 1b9f2fcb4b43f0ccb26c6126fa1faf17 446 Gene3D G3DSA:3.40.630.30 300 443 5.2E-37 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS13120 1b9f2fcb4b43f0ccb26c6126fa1faf17 446 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 445 209.404 T 26-04-2016 IPR010167 Amino-acid N-acetyltransferase (ArgA) GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 RGE_RS13120 1b9f2fcb4b43f0ccb26c6126fa1faf17 446 SUPERFAMILY SSF53633 4 296 7.82E-62 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS13120 1b9f2fcb4b43f0ccb26c6126fa1faf17 446 Pfam PF00696 Amino acid kinase family 26 224 1.8E-22 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS13120 1b9f2fcb4b43f0ccb26c6126fa1faf17 446 SUPERFAMILY SSF55729 301 422 1.01E-18 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS13120 1b9f2fcb4b43f0ccb26c6126fa1faf17 446 Pfam PF00583 Acetyltransferase (GNAT) family 344 416 1.0E-7 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS13120 1b9f2fcb4b43f0ccb26c6126fa1faf17 446 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 9 445 2.7E-178 T 26-04-2016 IPR010167 Amino-acid N-acetyltransferase (ArgA) GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 RGE_RS07360 6628097d6e74764947b06984db2682ea 92 Hamap MF_00599 Cell division protein FtsB [ftsB]. 2 90 26.031 T 26-04-2016 IPR023081 Cell division protein FtsB RGE_RS07360 6628097d6e74764947b06984db2682ea 92 PANTHER PTHR37485:SF1 2 89 3.6E-27 T 26-04-2016 RGE_RS07360 6628097d6e74764947b06984db2682ea 92 PANTHER PTHR37485 2 89 3.6E-27 T 26-04-2016 RGE_RS07360 6628097d6e74764947b06984db2682ea 92 Pfam PF04977 Septum formation initiator 11 88 6.2E-22 T 26-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 RGE_RS04095 70549a560533b2dd18c59976675745bb 298 Pfam PF01380 SIS domain 129 257 3.1E-19 T 26-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RGE_RS04095 70549a560533b2dd18c59976675745bb 298 Gene3D G3DSA:1.10.10.10 1 77 2.2E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04095 70549a560533b2dd18c59976675745bb 298 SUPERFAMILY SSF46689 2 76 6.18E-17 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04095 70549a560533b2dd18c59976675745bb 298 PANTHER PTHR30514:SF1 1 263 9.8E-66 T 26-04-2016 RGE_RS04095 70549a560533b2dd18c59976675745bb 298 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 73 4.3E-16 T 26-04-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 RGE_RS04095 70549a560533b2dd18c59976675745bb 298 PANTHER PTHR30514 1 263 9.8E-66 T 26-04-2016 RGE_RS04095 70549a560533b2dd18c59976675745bb 298 SUPERFAMILY SSF53697 99 285 9.27E-35 T 26-04-2016 RGE_RS04095 70549a560533b2dd18c59976675745bb 298 Gene3D G3DSA:3.40.50.10490 95 267 1.2E-34 T 26-04-2016 RGE_RS16580 eefddbdcc0ab3c2c94e3c8456a231162 198 SUPERFAMILY SSF144091 3 192 5.1E-48 T 26-04-2016 RGE_RS16580 eefddbdcc0ab3c2c94e3c8456a231162 198 Gene3D G3DSA:1.20.1540.10 4 189 3.5E-46 T 26-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RGE_RS16580 eefddbdcc0ab3c2c94e3c8456a231162 198 Pfam PF01694 Rhomboid family 45 191 2.5E-36 T 26-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RGE_RS16580 eefddbdcc0ab3c2c94e3c8456a231162 198 PANTHER PTHR22936 2 186 3.1E-35 T 26-04-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 RGE_RS16580 eefddbdcc0ab3c2c94e3c8456a231162 198 SMART SM01160 40 128 0.0047 T 26-04-2016 RGE_RS04300 e417e6ced16f2e8f5c427e190f1ef766 672 Gene3D G3DSA:3.40.50.300 79 127 1.4E-13 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04300 e417e6ced16f2e8f5c427e190f1ef766 672 Gene3D G3DSA:3.40.50.300 229 297 1.4E-13 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04300 e417e6ced16f2e8f5c427e190f1ef766 672 SUPERFAMILY SSF52540 210 336 2.25E-20 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04300 e417e6ced16f2e8f5c427e190f1ef766 672 SUPERFAMILY SSF52540 62 133 2.25E-20 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04300 e417e6ced16f2e8f5c427e190f1ef766 672 Pfam PF00350 Dynamin family 80 293 2.8E-10 T 26-04-2016 IPR022812 Dynamin superfamily RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 255 1.5E-53 T 26-04-2016 RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PANTHER PTHR24322 9 136 3.0E-53 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PANTHER PTHR24322 152 184 3.0E-53 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 Gene3D G3DSA:3.40.50.720 1 255 6.7E-79 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PANTHER PTHR24322:SF328 9 136 3.0E-53 T 26-04-2016 RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PANTHER PTHR24322:SF328 152 184 3.0E-53 T 26-04-2016 RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 SUPERFAMILY SSF51735 3 256 1.43E-73 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.2E-11 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.2E-11 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.2E-11 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.3E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 1.3E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.3E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.3E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.3E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.3E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 5 257 3.4E-105 T 26-04-2016 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 RGE_RS13060 904ef0999459d05c910fcb1aec1a05b6 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS00050 5a85a0dea4dde9f2d4b2443feaa9cdaa 89 Gene3D G3DSA:1.10.260.40 12 70 2.2E-16 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS00050 5a85a0dea4dde9f2d4b2443feaa9cdaa 89 SMART SM00530 18 73 1.4E-6 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS00050 5a85a0dea4dde9f2d4b2443feaa9cdaa 89 Pfam PF13560 Helix-turn-helix domain 14 75 3.1E-9 T 26-04-2016 RGE_RS00050 5a85a0dea4dde9f2d4b2443feaa9cdaa 89 SUPERFAMILY SSF47413 7 74 2.25E-16 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS13085 62395d066498276e663db42382bd711f 229 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 225 4.2E-60 T 26-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13085 62395d066498276e663db42382bd711f 229 PANTHER PTHR32125 10 229 1.1E-54 T 26-04-2016 RGE_RS13085 62395d066498276e663db42382bd711f 229 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 227 5.5E-55 T 26-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13085 62395d066498276e663db42382bd711f 229 SUPERFAMILY SSF53448 8 226 6.53E-50 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS13085 62395d066498276e663db42382bd711f 229 PANTHER PTHR32125:SF4 10 229 1.1E-54 T 26-04-2016 RGE_RS13085 62395d066498276e663db42382bd711f 229 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 106 113 - T 26-04-2016 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13085 62395d066498276e663db42382bd711f 229 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 7 229 28.546 T 26-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13085 62395d066498276e663db42382bd711f 229 Gene3D G3DSA:3.90.550.10 7 228 1.2E-59 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS10180 a1709cf1a013f1207e9b97b6df377a85 191 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 3 185 6.3E-57 T 26-04-2016 IPR006286 Peptidase C56, PfpI GO:0016798 RGE_RS10180 a1709cf1a013f1207e9b97b6df377a85 191 PANTHER PTHR11019 2 92 7.8E-54 T 26-04-2016 RGE_RS10180 a1709cf1a013f1207e9b97b6df377a85 191 PANTHER PTHR11019 110 141 7.8E-54 T 26-04-2016 RGE_RS10180 a1709cf1a013f1207e9b97b6df377a85 191 Pfam PF01965 DJ-1/PfpI family 3 183 1.1E-52 T 26-04-2016 IPR002818 DJ-1/PfpI RGE_RS10180 a1709cf1a013f1207e9b97b6df377a85 191 Gene3D G3DSA:3.40.50.880 1 185 1.1E-55 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS10180 a1709cf1a013f1207e9b97b6df377a85 191 SUPERFAMILY SSF52317 1 186 7.55E-51 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS10180 a1709cf1a013f1207e9b97b6df377a85 191 PANTHER PTHR11019:SF112 2 92 7.8E-54 T 26-04-2016 RGE_RS10180 a1709cf1a013f1207e9b97b6df377a85 191 PANTHER PTHR11019:SF112 110 141 7.8E-54 T 26-04-2016 RGE_RS16215 efe5058b67857d92739096a8f7aab685 231 PANTHER PTHR23291 18 229 2.8E-35 T 26-04-2016 IPR006214 Bax inhibitor 1-related RGE_RS16215 efe5058b67857d92739096a8f7aab685 231 PANTHER PTHR23291:SF37 18 229 2.8E-35 T 26-04-2016 RGE_RS16215 efe5058b67857d92739096a8f7aab685 231 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 23 223 7.6E-38 T 26-04-2016 RGE_RS08495 d6c60dd5a789f1022f4c63f8cdbdae62 87 Pfam PF00550 Phosphopantetheine attachment site 11 74 1.1E-8 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS08495 d6c60dd5a789f1022f4c63f8cdbdae62 87 SUPERFAMILY SSF47336 5 79 4.19E-12 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS08495 d6c60dd5a789f1022f4c63f8cdbdae62 87 Gene3D G3DSA:1.10.1200.10 5 78 2.1E-14 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS08495 d6c60dd5a789f1022f4c63f8cdbdae62 87 ProSitePatterns PS00012 Phosphopantetheine attachment site. 34 49 - T 26-04-2016 IPR006162 Phosphopantetheine attachment site RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 55 752 1.7E-215 T 26-04-2016 IPR004811 RelA/SpoT family GO:0015969 RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 PANTHER PTHR21262:SF0 1 757 2.6E-295 T 26-04-2016 RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 Pfam PF13291 ACT domain 677 754 4.2E-15 T 26-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 Pfam PF13328 HD domain 55 204 6.0E-46 T 26-04-2016 IPR003607 HD/PDEase domain RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 SUPERFAMILY SSF81271 405 477 3.71E-21 T 26-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 SUPERFAMILY SSF55021 679 754 3.36E-6 T 26-04-2016 RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 Pfam PF02824 TGS domain 418 477 4.3E-21 T 26-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 Gene3D G3DSA:3.10.20.30 418 478 8.2E-19 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 SMART SM00471 70 182 4.5E-8 T 26-04-2016 IPR003607 HD/PDEase domain RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 SUPERFAMILY SSF109604 42 220 7.53E-68 T 26-04-2016 RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 Pfam PF04607 Region found in RelA / SpoT proteins 264 374 1.4E-33 T 26-04-2016 IPR007685 RelA/SpoT GO:0015969 RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 Gene3D G3DSA:3.30.460.10 226 353 1.4E-43 T 26-04-2016 RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 PANTHER PTHR21262 1 757 2.6E-295 T 26-04-2016 RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 SUPERFAMILY SSF81301 210 422 1.42E-57 T 26-04-2016 RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 SMART SM00954 264 374 2.9E-62 T 26-04-2016 IPR007685 RelA/SpoT GO:0015969 RGE_RS17410 20ef09278d2bcbe7248d6c33288061da 760 Gene3D G3DSA:3.30.70.260 679 751 1.1E-5 T 26-04-2016 RGE_RS22310 cc800d06015a11a89807a5aebea2b2ee 354 Pfam PF02371 Transposase IS116/IS110/IS902 family 221 292 7.2E-22 T 26-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RGE_RS22310 cc800d06015a11a89807a5aebea2b2ee 354 PANTHER PTHR33055 2 354 3.2E-111 T 26-04-2016 RGE_RS22310 cc800d06015a11a89807a5aebea2b2ee 354 PANTHER PTHR33055:SF2 2 354 3.2E-111 T 26-04-2016 RGE_RS22310 cc800d06015a11a89807a5aebea2b2ee 354 Pfam PF01548 Transposase 6 150 5.1E-15 T 26-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 12 518 1.9E-182 T 26-04-2016 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 SUPERFAMILY SSF46977 424 526 3.79E-31 T 26-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 Pfam PF02910 Fumarate reductase flavoprotein C-term 440 519 2.9E-14 T 26-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 SUPERFAMILY SSF51905 10 255 3.54E-72 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 SUPERFAMILY SSF51905 356 444 3.54E-72 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 Gene3D G3DSA:3.50.50.60 10 243 3.0E-98 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 Gene3D G3DSA:3.50.50.60 349 409 3.0E-98 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 SUPERFAMILY SSF56425 238 352 1.11E-42 T 26-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 PANTHER PTHR11632:SF27 13 531 9.9E-237 T 26-04-2016 RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 Gene3D G3DSA:3.90.700.10 244 348 3.0E-39 T 26-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 2.8E-7 T 26-04-2016 RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 13 32 2.8E-7 T 26-04-2016 RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 PANTHER PTHR11632 13 531 9.9E-237 T 26-04-2016 RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 Pfam PF00890 FAD binding domain 13 392 3.1E-99 T 26-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RGE_RS15800 3ce76b6e8486854046c887520a13b24d 538 Gene3D G3DSA:1.20.58.100 425 525 2.2E-32 T 26-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RGE_RS16485 468b9b00d0bda8561250b9a5179d41c8 500 SUPERFAMILY SSF109604 317 496 1.02E-39 T 26-04-2016 RGE_RS16485 468b9b00d0bda8561250b9a5179d41c8 500 Gene3D G3DSA:3.30.420.40 10 129 8.5E-44 T 26-04-2016 RGE_RS16485 468b9b00d0bda8561250b9a5179d41c8 500 PANTHER PTHR30005:SF4 11 428 8.8E-130 T 26-04-2016 RGE_RS16485 468b9b00d0bda8561250b9a5179d41c8 500 Gene3D G3DSA:3.30.420.150 130 306 4.4E-47 T 26-04-2016 RGE_RS16485 468b9b00d0bda8561250b9a5179d41c8 500 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 11 303 1.9E-93 T 26-04-2016 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 RGE_RS16485 468b9b00d0bda8561250b9a5179d41c8 500 SUPERFAMILY SSF53067 134 307 5.18E-42 T 26-04-2016 RGE_RS16485 468b9b00d0bda8561250b9a5179d41c8 500 SUPERFAMILY SSF53067 11 131 4.27E-35 T 26-04-2016 RGE_RS16485 468b9b00d0bda8561250b9a5179d41c8 500 PANTHER PTHR30005 11 428 8.8E-130 T 26-04-2016 RGE_RS16485 468b9b00d0bda8561250b9a5179d41c8 500 PIRSF PIRSF001267 1 498 1.6E-178 T 26-04-2016 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40|UniPathway: UPA00908 RGE_RS16485 468b9b00d0bda8561250b9a5179d41c8 500 Pfam PF02541 Ppx/GppA phosphatase family 40 304 4.1E-70 T 26-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 RGE_RS19305 dde7817cdac4e62a8be4ccf300b139dc 149 PANTHER PTHR33164 1 148 5.5E-17 T 26-04-2016 RGE_RS19305 dde7817cdac4e62a8be4ccf300b139dc 149 PANTHER PTHR33164:SF2 1 148 5.5E-17 T 26-04-2016 RGE_RS19305 dde7817cdac4e62a8be4ccf300b139dc 149 SUPERFAMILY SSF46785 18 139 7.24E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19305 dde7817cdac4e62a8be4ccf300b139dc 149 Pfam PF12802 MarR family 32 89 1.2E-10 T 26-04-2016 RGE_RS19305 dde7817cdac4e62a8be4ccf300b139dc 149 SMART SM00347 26 125 2.9E-15 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS19305 dde7817cdac4e62a8be4ccf300b139dc 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 4.4E-9 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS19305 dde7817cdac4e62a8be4ccf300b139dc 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 4.4E-9 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS19305 dde7817cdac4e62a8be4ccf300b139dc 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 4.4E-9 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS19305 dde7817cdac4e62a8be4ccf300b139dc 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 4.4E-9 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS19305 dde7817cdac4e62a8be4ccf300b139dc 149 Gene3D G3DSA:1.10.10.10 18 139 3.1E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 Pfam PF13432 Tetratricopeptide repeat 9 73 1.1E-10 T 26-04-2016 RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 Pfam PF13432 Tetratricopeptide repeat 81 121 0.0045 T 26-04-2016 RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 PANTHER PTHR23083 5 166 3.5E-30 T 26-04-2016 RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 Pfam PF13431 Tetratricopeptide repeat 129 159 9.0E-5 T 26-04-2016 RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 367 398 1.9E-5 T 26-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 SUPERFAMILY SSF53756 190 426 3.45E-23 T 26-04-2016 RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 Gene3D G3DSA:3.40.50.2000 366 406 4.5E-10 T 26-04-2016 RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 SUPERFAMILY SSF48452 4 166 2.68E-31 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 Gene3D G3DSA:1.25.40.10 5 160 2.2E-37 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 SMART SM00028 39 72 3.5E-6 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 SMART SM00028 73 106 7.5 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 SMART SM00028 5 38 21.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS16905 1c0363ab316f83f6bdbd6a56431c00ca 453 SMART SM00028 107 140 1.3 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 Gene3D G3DSA:1.10.3020.10 178 269 1.3E-6 T 26-04-2016 RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 43 619 5.2E-119 T 26-04-2016 IPR005674 CocE/Serine esterase GO:0016787 RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 SMART SM00939 350 613 1.7E-77 T 26-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 SUPERFAMILY SSF53474 254 378 2.79E-48 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 SUPERFAMILY SSF53474 41 227 2.79E-48 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 SUPERFAMILY SSF49785 393 617 9.14E-61 T 26-04-2016 IPR008979 Galactose-binding domain-like RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 Gene3D G3DSA:3.40.50.1820 41 177 9.2E-69 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 Gene3D G3DSA:3.40.50.1820 270 376 9.2E-69 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 362 612 1.5E-45 T 26-04-2016 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 Gene3D G3DSA:2.60.120.260 387 617 1.2E-75 T 26-04-2016 IPR008979 Galactose-binding domain-like RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 PANTHER PTHR11731:SF151 260 369 2.3E-39 T 26-04-2016 RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 PANTHER PTHR11731:SF151 44 204 2.3E-39 T 26-04-2016 RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 PANTHER PTHR11731 260 369 2.3E-39 T 26-04-2016 RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 PANTHER PTHR11731 44 204 2.3E-39 T 26-04-2016 RGE_RS05695 7049bab5255cb35163a83e981ce9baa5 625 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 46 329 1.2E-56 T 26-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Pfam PF08448 PAS fold 886 994 4.9E-12 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Pfam PF08448 PAS fold 140 249 1.8E-8 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SUPERFAMILY SSF55785 487 615 3.81E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Gene3D G3DSA:3.30.450.20 865 990 1.2E-20 T 26-04-2016 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Gene3D G3DSA:3.30.450.20 743 849 2.2E-13 T 26-04-2016 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Gene3D G3DSA:3.30.450.20 494 614 2.7E-10 T 26-04-2016 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SUPERFAMILY SSF55785 130 246 1.7E-11 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SMART SM00086 825 866 2.2 T 26-04-2016 IPR001610 PAC motif RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SMART SM00086 951 992 68.0 T 26-04-2016 IPR001610 PAC motif RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SMART SM00086 700 741 0.0096 T 26-04-2016 IPR001610 PAC motif RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SMART SM00086 450 490 210.0 T 26-04-2016 IPR001610 PAC motif RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Gene3D G3DSA:3.30.450.20 12 51 1.1E-5 T 26-04-2016 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Gene3D G3DSA:3.30.450.20 131 246 3.9E-11 T 26-04-2016 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Pfam PF13188 PAS domain 14 51 0.0012 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SUPERFAMILY SSF55785 13 94 3.32E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 251 6.1E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 876 998 2.1E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 634 747 5.3E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 752 870 7.2E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SUPERFAMILY SSF55785 737 845 3.07E-15 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 PANTHER PTHR24423 607 756 2.5E-34 T 26-04-2016 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 PANTHER PTHR24423 876 1149 2.5E-34 T 26-04-2016 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Gene3D G3DSA:3.30.450.20 615 739 1.0E-19 T 26-04-2016 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SMART SM00091 502 568 3.6 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SMART SM00091 878 945 3.1E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SMART SM00091 753 818 0.0084 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SMART SM00091 260 327 34.0 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SMART SM00091 13 87 30.0 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SMART SM00091 130 197 2.2E-4 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SMART SM00091 629 694 1.8 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Pfam PF13426 PAS domain 764 847 2.3E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Pfam PF13426 PAS domain 642 738 2.1E-12 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Pfam PF13426 PAS domain 520 615 4.4E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Gene3D G3DSA:3.30.450.20 271 314 1.1E-4 T 26-04-2016 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Gene3D G3DSA:3.30.450.20 431 489 1.1E-4 T 26-04-2016 RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SUPERFAMILY SSF55785 864 990 6.84E-20 T 26-04-2016 IPR000014 PAS domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 Pfam PF07568 Histidine kinase 1013 1057 4.0E-8 T 26-04-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain RGE_RS23120 415f0668b1b08dc005007c9768ba1c3d 1204 SUPERFAMILY SSF55785 614 738 1.54E-19 T 26-04-2016 IPR000014 PAS domain RGE_RS14435 a599034d039a00d434d378d63f17032a 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 258 3.6E-47 T 26-04-2016 RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PANTHER PTHR24322 153 185 1.2E-66 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PANTHER PTHR24322 12 137 1.2E-66 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 5.7E-28 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.7E-28 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 5.7E-28 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 5.7E-28 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 5.7E-28 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 5.7E-28 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14435 a599034d039a00d434d378d63f17032a 263 SUPERFAMILY SSF51735 1 258 1.69E-68 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 4.0E-5 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.0E-5 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.0E-5 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14435 a599034d039a00d434d378d63f17032a 263 Gene3D G3DSA:3.40.50.720 2 258 3.0E-73 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PANTHER PTHR24322:SF25 153 185 1.2E-66 T 26-04-2016 RGE_RS14435 a599034d039a00d434d378d63f17032a 263 PANTHER PTHR24322:SF25 12 137 1.2E-66 T 26-04-2016 RGE_RS20325 166bd4657d436dc2ca61da768caf06a1 283 PANTHER PTHR14237:SF30 7 283 1.9E-78 T 26-04-2016 RGE_RS20325 166bd4657d436dc2ca61da768caf06a1 283 SUPERFAMILY SSF141673 8 134 1.96E-40 T 26-04-2016 RGE_RS20325 166bd4657d436dc2ca61da768caf06a1 283 Pfam PF03476 MOSC N-terminal beta barrel domain 7 120 8.0E-31 T 26-04-2016 IPR005303 MOSC, N-terminal beta barrel RGE_RS20325 166bd4657d436dc2ca61da768caf06a1 283 SUPERFAMILY SSF50800 154 262 9.52E-15 T 26-04-2016 IPR011037 Pyruvate kinase-like, insert domain RGE_RS20325 166bd4657d436dc2ca61da768caf06a1 283 SUPERFAMILY SSF50800 5 54 9.52E-15 T 26-04-2016 IPR011037 Pyruvate kinase-like, insert domain RGE_RS20325 166bd4657d436dc2ca61da768caf06a1 283 PANTHER PTHR14237 7 283 1.9E-78 T 26-04-2016 RGE_RS20325 166bd4657d436dc2ca61da768caf06a1 283 Pfam PF03473 MOSC domain 146 275 5.2E-25 T 26-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RGE_RS00260 183dff46b93139094a86f23a99d23d5c 90 Pfam PF03692 Putative zinc- or iron-chelating domain 8 61 6.4E-5 T 26-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein RGE_RS00260 183dff46b93139094a86f23a99d23d5c 90 PANTHER PTHR36931 1 89 5.9E-34 T 26-04-2016 RGE_RS19220 7578d3ff21c5321231e0d9ee38fdbbab 537 SUPERFAMILY SSF58104 239 521 2.35E-72 T 26-04-2016 RGE_RS19220 7578d3ff21c5321231e0d9ee38fdbbab 537 SMART SM00283 272 519 1.4E-91 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS19220 7578d3ff21c5321231e0d9ee38fdbbab 537 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 326 518 1.5E-59 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS19220 7578d3ff21c5321231e0d9ee38fdbbab 537 SMART SM00304 219 271 3.2E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS19220 7578d3ff21c5321231e0d9ee38fdbbab 537 Pfam PF00672 HAMP domain 200 268 5.2E-11 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS19220 7578d3ff21c5321231e0d9ee38fdbbab 537 Gene3D G3DSA:1.10.287.950 287 491 2.8E-60 T 26-04-2016 RGE_RS19220 7578d3ff21c5321231e0d9ee38fdbbab 537 PANTHER PTHR32089:SF63 108 522 8.9E-141 T 26-04-2016 RGE_RS19220 7578d3ff21c5321231e0d9ee38fdbbab 537 PANTHER PTHR32089 108 522 8.9E-141 T 26-04-2016 RGE_RS19220 7578d3ff21c5321231e0d9ee38fdbbab 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 447 476 3.5E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19220 7578d3ff21c5321231e0d9ee38fdbbab 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 293 322 3.5E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19220 7578d3ff21c5321231e0d9ee38fdbbab 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 370 397 3.5E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19220 7578d3ff21c5321231e0d9ee38fdbbab 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 399 428 3.5E-51 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 Pfam PF00773 RNB domain 194 528 9.5E-102 T 26-04-2016 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 TIGRFAM TIGR02063 RNase_R: ribonuclease R 17 685 4.9E-232 T 26-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 ProSitePatterns PS01175 Ribonuclease II family signature. 497 521 - T 26-04-2016 IPR022966 Ribonuclease II/R, conserved site RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 17 685 8.0E-196 T 26-04-2016 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 Pfam PF00575 S1 RNA binding domain 604 682 8.6E-11 T 26-04-2016 IPR003029 S1 domain GO:0003676 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 SMART SM00357 20 79 6.3E-7 T 26-04-2016 IPR011129 Cold shock protein GO:0003676 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 SUPERFAMILY SSF50249 558 602 2.74E-139 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 SUPERFAMILY SSF50249 154 531 2.74E-139 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 PANTHER PTHR23355 19 528 2.1E-219 T 26-04-2016 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 PANTHER PTHR23355 548 744 2.1E-219 T 26-04-2016 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 Pfam PF08206 Ribonuclease B OB domain 21 78 4.4E-17 T 26-04-2016 IPR013223 Ribonuclease B, N-terminal OB domain RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 SUPERFAMILY SSF50249 16 81 2.71E-13 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 Gene3D G3DSA:2.40.50.140 604 687 3.1E-17 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 SUPERFAMILY SSF50249 604 684 1.01E-17 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 SMART SM00316 602 685 1.0E-11 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 SMART SM00316 14 76 56.0 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 Hamap MF_01895 Ribonuclease R [rnr]. 6 685 52.369 T 26-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 SMART SM00955 194 530 6.9E-176 T 26-04-2016 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 SUPERFAMILY SSF50249 72 171 5.14E-19 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 PANTHER PTHR23355:SF9 19 528 2.1E-219 T 26-04-2016 RGE_RS13335 827dbd448b56129715a0d9d09d9121c4 753 PANTHER PTHR23355:SF9 548 744 2.1E-219 T 26-04-2016 RGE_RS15615 af350ecc5e041ee0559af0f67634a772 482 PANTHER PTHR30465:SF2 229 469 1.3E-83 T 26-04-2016 RGE_RS15615 af350ecc5e041ee0559af0f67634a772 482 PANTHER PTHR30465:SF2 25 138 1.3E-83 T 26-04-2016 RGE_RS15615 af350ecc5e041ee0559af0f67634a772 482 Gene3D G3DSA:1.10.3720.10 241 465 1.6E-21 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15615 af350ecc5e041ee0559af0f67634a772 482 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 264 468 1.3E-25 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15615 af350ecc5e041ee0559af0f67634a772 482 SUPERFAMILY SSF161098 248 446 2.22E-18 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15615 af350ecc5e041ee0559af0f67634a772 482 PANTHER PTHR30465 229 469 1.3E-83 T 26-04-2016 RGE_RS15615 af350ecc5e041ee0559af0f67634a772 482 PANTHER PTHR30465 25 138 1.3E-83 T 26-04-2016 RGE_RS05725 d6a633e0248aab5e5a968967513e10a1 317 Gene3D G3DSA:3.40.190.10 193 282 7.2E-20 T 26-04-2016 RGE_RS05725 d6a633e0248aab5e5a968967513e10a1 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 7.3E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05725 d6a633e0248aab5e5a968967513e10a1 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 7.3E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05725 d6a633e0248aab5e5a968967513e10a1 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 7.3E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05725 d6a633e0248aab5e5a968967513e10a1 317 Gene3D G3DSA:1.10.10.10 1 86 2.1E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05725 d6a633e0248aab5e5a968967513e10a1 317 SUPERFAMILY SSF46785 2 86 1.36E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05725 d6a633e0248aab5e5a968967513e10a1 317 Gene3D G3DSA:3.40.190.10 93 192 9.5E-8 T 26-04-2016 RGE_RS05725 d6a633e0248aab5e5a968967513e10a1 317 PANTHER PTHR30537 1 316 5.3E-87 T 26-04-2016 RGE_RS05725 d6a633e0248aab5e5a968967513e10a1 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 2.7E-19 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05725 d6a633e0248aab5e5a968967513e10a1 317 Pfam PF03466 LysR substrate binding domain 95 312 1.5E-28 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS05725 d6a633e0248aab5e5a968967513e10a1 317 SUPERFAMILY SSF53850 95 315 4.34E-31 T 26-04-2016 RGE_RS05725 d6a633e0248aab5e5a968967513e10a1 317 PANTHER PTHR30537:SF26 1 316 5.3E-87 T 26-04-2016 RGE_RS20890 ed5a20698417c27286118d2e0a000662 276 Pfam PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) 17 272 2.2E-100 T 26-04-2016 IPR009953 Dinitrogenase reductase ADP-ribosyltransferase RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 SUPERFAMILY SSF55874 481 656 1.13E-48 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 SMART SM01080 30 348 2.9E-20 T 26-04-2016 IPR007890 CHASE2 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 539 650 3.1E-27 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 SMART SM00387 539 651 2.6E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 Gene3D G3DSA:3.40.50.2300 685 805 9.8E-35 T 26-04-2016 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 SMART SM00448 684 800 9.7E-30 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 Gene3D G3DSA:1.10.287.130 422 487 1.3E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 590 3.1E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 PRINTS PR00344 Bacterial sensor protein C-terminal signature 611 629 3.1E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 PRINTS PR00344 Bacterial sensor protein C-terminal signature 594 604 3.1E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 PRINTS PR00344 Bacterial sensor protein C-terminal signature 635 648 3.1E-19 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 SUPERFAMILY SSF52172 685 805 1.14E-32 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 SUPERFAMILY SSF47384 417 493 1.06E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 PANTHER PTHR24423 406 805 1.2E-145 T 26-04-2016 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 PANTHER PTHR24423 238 254 1.2E-145 T 26-04-2016 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 Gene3D G3DSA:3.30.565.10 493 656 7.7E-50 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 SMART SM00388 427 492 2.3E-21 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 Pfam PF00072 Response regulator receiver domain 686 800 4.4E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 Pfam PF05226 CHASE2 domain 21 342 1.2E-28 T 26-04-2016 IPR007890 CHASE2 RGE_RS10320 db41102b4b295b78930dfd2c637249d0 807 Pfam PF00512 His Kinase A (phospho-acceptor) domain 427 492 6.4E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 SUPERFAMILY SSF55785 212 333 1.92E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 SUPERFAMILY SSF55874 411 578 1.44E-43 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 SUPERFAMILY SSF47226 879 979 3.27E-17 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 SUPERFAMILY SSF47226 831 844 3.27E-17 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 Gene3D G3DSA:1.20.120.160 876 984 1.1E-16 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 SMART SM00091 222 289 3.8E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 Gene3D G3DSA:1.10.287.130 360 416 4.9E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 Gene3D G3DSA:3.30.565.10 421 578 1.3E-43 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 SMART SM00388 355 420 7.0E-23 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 PANTHER PTHR24423 716 856 7.5E-169 T 26-04-2016 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 PANTHER PTHR24423 220 587 7.5E-169 T 26-04-2016 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 SMART SM00304 164 218 2.1E-4 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 PANTHER PTHR24423:SF486 220 587 7.5E-169 T 26-04-2016 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 Gene3D G3DSA:3.30.450.20 223 359 1.1E-15 T 26-04-2016 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 SUPERFAMILY SSF47384 340 421 1.26E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 Pfam PF00072 Response regulator receiver domain 737 848 5.2E-29 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 Pfam PF01627 Hpt domain 913 980 1.4E-5 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 220 342 1.1E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 SUPERFAMILY SSF52172 598 714 3.32E-8 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 PANTHER PTHR24423:SF486 716 856 7.5E-169 T 26-04-2016 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 467 579 8.4E-26 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 SMART SM00387 467 584 3.4E-34 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 Pfam PF00672 HAMP domain 151 215 1.1E-8 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 Gene3D G3DSA:3.40.50.2300 598 716 3.5E-7 T 26-04-2016 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 SUPERFAMILY SSF52172 725 854 1.42E-40 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 Pfam PF08448 PAS fold 229 337 7.9E-8 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 Pfam PF00512 His Kinase A (phospho-acceptor) domain 355 420 2.8E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 PRINTS PR00344 Bacterial sensor protein C-terminal signature 568 581 4.0E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 PRINTS PR00344 Bacterial sensor protein C-terminal signature 544 562 4.0E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 537 4.0E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 PRINTS PR00344 Bacterial sensor protein C-terminal signature 509 523 4.0E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 SMART SM00448 735 848 2.8E-40 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS20930 52347584a39d0679079e80c863ab5f73 1000 Gene3D G3DSA:3.40.50.2300 725 854 3.8E-44 T 26-04-2016 RGE_RS09700 5eefa6e5b9a3037db920e0fc42490aa7 302 PANTHER PTHR30244 1 302 2.7E-40 T 26-04-2016 RGE_RS09700 5eefa6e5b9a3037db920e0fc42490aa7 302 Gene3D G3DSA:1.20.1330.10 55 256 3.0E-14 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS09700 5eefa6e5b9a3037db920e0fc42490aa7 302 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 180 7.2E-44 T 26-04-2016 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 RGE_RS09700 5eefa6e5b9a3037db920e0fc42490aa7 302 PANTHER PTHR30244:SF5 1 302 2.7E-40 T 26-04-2016 RGE_RS09700 5eefa6e5b9a3037db920e0fc42490aa7 302 SUPERFAMILY SSF64518 1 301 2.62E-49 T 26-04-2016 RGE_RS09700 5eefa6e5b9a3037db920e0fc42490aa7 302 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 139 2.6E-16 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS06055 463e427113d48cb3f36d0b2dca60fec1 326 PANTHER PTHR23408:SF17 20 325 1.2E-134 T 26-04-2016 RGE_RS06055 463e427113d48cb3f36d0b2dca60fec1 326 Gene3D G3DSA:1.20.5.170 20 56 7.4E-15 T 26-04-2016 RGE_RS06055 463e427113d48cb3f36d0b2dca60fec1 326 Gene3D G3DSA:3.40.50.300 57 257 4.0E-47 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06055 463e427113d48cb3f36d0b2dca60fec1 326 PANTHER PTHR23408 20 325 1.2E-134 T 26-04-2016 RGE_RS06055 463e427113d48cb3f36d0b2dca60fec1 326 Pfam PF03308 ArgK protein 24 293 6.1E-102 T 26-04-2016 RGE_RS06055 463e427113d48cb3f36d0b2dca60fec1 326 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 20 316 1.5E-99 T 26-04-2016 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 RGE_RS06055 463e427113d48cb3f36d0b2dca60fec1 326 SUPERFAMILY SSF52540 20 324 6.7E-85 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 PANTHER PTHR33308 135 276 1.5E-28 T 26-04-2016 RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 141 277 5.8E-22 T 26-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 PANTHER PTHR33308:SF3 135 276 1.5E-28 T 26-04-2016 RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 Pfam PF10135 Rod binding protein 47 93 2.1E-8 T 26-04-2016 IPR019301 Flagellar protein FlgJ, N-terminal RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 130 277 9.0E-67 T 26-04-2016 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 SMART SM00047 121 279 1.3E-32 T 26-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 Gene3D G3DSA:1.10.530.10 131 168 6.3E-5 T 26-04-2016 RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 PRINTS PR01002 Flagellar protein FlgJ signature 218 239 8.5E-34 T 26-04-2016 RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 PRINTS PR01002 Flagellar protein FlgJ signature 3 23 8.5E-34 T 26-04-2016 RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 PRINTS PR01002 Flagellar protein FlgJ signature 261 279 8.5E-34 T 26-04-2016 RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 PRINTS PR01002 Flagellar protein FlgJ signature 174 195 8.5E-34 T 26-04-2016 RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 PRINTS PR01002 Flagellar protein FlgJ signature 196 217 8.5E-34 T 26-04-2016 RGE_RS08530 2538478c9814bbe34b476eee7c5801c2 286 PRINTS PR01002 Flagellar protein FlgJ signature 154 172 8.5E-34 T 26-04-2016 RGE_RS04375 284d9195c90b721fd9b3c422d9823ce1 551 Gene3D G3DSA:3.40.50.261 164 292 2.1E-13 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS04375 284d9195c90b721fd9b3c422d9823ce1 551 SUPERFAMILY SSF52210 336 490 1.25E-9 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS04375 284d9195c90b721fd9b3c422d9823ce1 551 Pfam PF02629 CoA binding domain 191 283 2.1E-10 T 26-04-2016 IPR003781 CoA-binding GO:0048037 RGE_RS04375 284d9195c90b721fd9b3c422d9823ce1 551 PANTHER PTHR11117 28 551 1.5E-138 T 26-04-2016 RGE_RS04375 284d9195c90b721fd9b3c422d9823ce1 551 Pfam PF00549 CoA-ligase 333 486 8.0E-48 T 26-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS04375 284d9195c90b721fd9b3c422d9823ce1 551 PANTHER PTHR11117:SF10 28 551 1.5E-138 T 26-04-2016 RGE_RS04375 284d9195c90b721fd9b3c422d9823ce1 551 SUPERFAMILY SSF51735 94 170 2.86E-5 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04375 284d9195c90b721fd9b3c422d9823ce1 551 SUPERFAMILY SSF52210 183 313 2.49E-14 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS07170 f06ab149c35a0d03cdb85606cf96be4d 142 SUPERFAMILY SSF54631 2 140 2.15E-34 T 26-04-2016 RGE_RS07170 f06ab149c35a0d03cdb85606cf96be4d 142 Pfam PF00571 CBS domain 17 59 1.5E-8 T 26-04-2016 IPR000644 CBS domain RGE_RS07170 f06ab149c35a0d03cdb85606cf96be4d 142 Pfam PF00571 CBS domain 72 125 1.9E-14 T 26-04-2016 IPR000644 CBS domain RGE_RS07170 f06ab149c35a0d03cdb85606cf96be4d 142 SMART SM00116 79 126 6.9E-10 T 26-04-2016 IPR000644 CBS domain RGE_RS07170 f06ab149c35a0d03cdb85606cf96be4d 142 SMART SM00116 14 61 9.6E-5 T 26-04-2016 IPR000644 CBS domain RGE_RS07170 f06ab149c35a0d03cdb85606cf96be4d 142 Gene3D G3DSA:3.10.580.10 4 126 1.4E-34 T 26-04-2016 RGE_RS07170 f06ab149c35a0d03cdb85606cf96be4d 142 PANTHER PTHR11911 3 140 5.1E-36 T 26-04-2016 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 22 864 6.4E-302 T 26-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 SMART SM00534 622 809 3.1E-104 T 26-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 Pfam PF05188 MutS domain II 144 267 4.8E-18 T 26-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 SUPERFAMILY SSF48334 284 576 3.14E-77 T 26-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 PANTHER PTHR11361:SF86 1 825 2.1E-302 T 26-04-2016 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 PANTHER PTHR11361 1 825 2.1E-302 T 26-04-2016 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 Gene3D G3DSA:3.40.1170.10 18 135 4.4E-46 T 26-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 SUPERFAMILY SSF55271 18 130 9.29E-40 T 26-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 Gene3D G3DSA:1.10.1420.10 330 488 4.4E-43 T 26-04-2016 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 SUPERFAMILY SSF53150 129 279 1.29E-32 T 26-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 SMART SM00533 298 602 3.1E-93 T 26-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 703 719 - T 26-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 Pfam PF05192 MutS domain III 284 570 6.7E-32 T 26-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 22 859 23.403 T 26-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 Gene3D G3DSA:3.30.420.110 142 270 3.6E-32 T 26-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 Gene3D G3DSA:3.40.50.300 578 812 2.5E-77 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 Pfam PF00488 MutS domain V 625 812 5.5E-79 T 26-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 SUPERFAMILY SSF52540 578 812 2.05E-58 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 Pfam PF05190 MutS family domain IV 439 530 3.0E-28 T 26-04-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 RGE_RS07445 a9980cfeb7df553ec2e0afecf31a5ef7 868 Pfam PF01624 MutS domain I 23 135 2.9E-38 T 26-04-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 RGE_RS06645 9670592b944174a45785a4b17445a43a 424 Pfam PF16491 CAAX prenyl protease N-terminal, five membrane helices 28 209 8.9E-54 T 26-04-2016 IPR032456 CAAX prenyl protease 1, N-terminal KEGG: 00900+3.4.24.84 RGE_RS06645 9670592b944174a45785a4b17445a43a 424 Gene3D G3DSA:3.30.2010.10 206 297 1.5E-21 T 26-04-2016 RGE_RS06645 9670592b944174a45785a4b17445a43a 424 Pfam PF01435 Peptidase family M48 213 420 2.8E-37 T 26-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RGE_RS06645 9670592b944174a45785a4b17445a43a 424 PANTHER PTHR10120 10 418 5.0E-120 T 26-04-2016 RGE_RS06645 9670592b944174a45785a4b17445a43a 424 PANTHER PTHR10120:SF24 10 418 5.0E-120 T 26-04-2016 IPR027057 CAAX prenyl protease 1 GO:0008233|GO:0071586 KEGG: 00900+3.4.24.84 RGE_RS17950 c55e9cccaf5f30bcca8e77f54c1a6e39 123 Pfam PF00072 Response regulator receiver domain 1 113 8.3E-16 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17950 c55e9cccaf5f30bcca8e77f54c1a6e39 123 SMART SM00448 1 121 1.5E-15 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17950 c55e9cccaf5f30bcca8e77f54c1a6e39 123 PANTHER PTHR26402 1 121 4.9E-20 T 26-04-2016 RGE_RS17950 c55e9cccaf5f30bcca8e77f54c1a6e39 123 SUPERFAMILY SSF52172 1 113 3.42E-23 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS17950 c55e9cccaf5f30bcca8e77f54c1a6e39 123 Gene3D G3DSA:3.40.50.2300 1 119 1.4E-23 T 26-04-2016 RGE_RS09990 de7568a666e633414449c260c7edebe2 298 SMART SM00245 89 278 4.1E-6 T 26-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RGE_RS09990 de7568a666e633414449c260c7edebe2 298 Pfam PF11918 N-terminal domain of Peptidase_S41 in eukaryotic IRBP 4 79 1.8E-13 T 26-04-2016 RGE_RS09990 de7568a666e633414449c260c7edebe2 298 Pfam PF03572 Peptidase family S41 131 276 2.9E-13 T 26-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RGE_RS09990 de7568a666e633414449c260c7edebe2 298 Gene3D G3DSA:3.30.750.44 5 81 1.7E-10 T 26-04-2016 RGE_RS09990 de7568a666e633414449c260c7edebe2 298 Gene3D G3DSA:3.90.226.10 103 291 7.1E-25 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS09990 de7568a666e633414449c260c7edebe2 298 SUPERFAMILY SSF52096 26 293 5.96E-34 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS09990 de7568a666e633414449c260c7edebe2 298 PANTHER PTHR11261 1 294 6.2E-40 T 26-04-2016 RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 PANTHER PTHR11117 69 682 1.9E-210 T 26-04-2016 RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 Pfam PF00583 Acetyltransferase (GNAT) family 784 858 4.0E-10 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 Gene3D G3DSA:3.30.1490.20 473 538 6.7E-4 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 Gene3D G3DSA:3.30.470.20 565 685 1.2E-6 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 Pfam PF13549 ATP-grasp domain 453 677 1.1E-81 T 26-04-2016 RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 Gene3D G3DSA:3.40.50.720 5 127 4.7E-7 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 SUPERFAMILY SSF56059 460 685 3.98E-41 T 26-04-2016 RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 SUPERFAMILY SSF52210 290 426 5.89E-29 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 Gene3D G3DSA:3.40.630.30 709 871 2.4E-23 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 PANTHER PTHR11117:SF8 69 682 1.9E-210 T 26-04-2016 RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 SUPERFAMILY SSF51735 3 134 1.61E-8 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 Gene3D G3DSA:3.40.50.261 281 418 6.6E-17 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 SUPERFAMILY SSF52210 125 287 1.44E-41 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 147 284 2.2E-50 T 26-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 SUPERFAMILY SSF55729 711 862 1.01E-23 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS03660 13b093df2e6c06dd893e7e1d900a3f7c 875 Gene3D G3DSA:3.40.50.261 128 280 1.0E-29 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS19900 0841b555dd63346b9a01e70dc2579e9d 218 Pfam PF05194 UreE urease accessory protein, C-terminal domain 78 164 1.9E-29 T 26-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 RGE_RS19900 0841b555dd63346b9a01e70dc2579e9d 218 SUPERFAMILY SSF69287 3 76 9.02E-14 T 26-04-2016 IPR004029 UreE urease accessory, N-terminal RGE_RS19900 0841b555dd63346b9a01e70dc2579e9d 218 SMART SM00988 7 71 9.4E-15 T 26-04-2016 IPR004029 UreE urease accessory, N-terminal RGE_RS19900 0841b555dd63346b9a01e70dc2579e9d 218 SUPERFAMILY SSF69737 78 144 8.76E-19 T 26-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 RGE_RS19900 0841b555dd63346b9a01e70dc2579e9d 218 Pfam PF02814 UreE urease accessory protein, N-terminal domain 12 71 2.0E-18 T 26-04-2016 IPR004029 UreE urease accessory, N-terminal RGE_RS19900 0841b555dd63346b9a01e70dc2579e9d 218 Gene3D G3DSA:3.30.70.790 79 147 9.3E-29 T 26-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 RGE_RS19900 0841b555dd63346b9a01e70dc2579e9d 218 Gene3D G3DSA:2.60.260.20 20 75 9.3E-19 T 26-04-2016 RGE_RS19900 0841b555dd63346b9a01e70dc2579e9d 218 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 145 23.212 T 26-04-2016 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 RGE_RS17880 eaeb2f5e65f743375bbd9143b7e3e44b 188 SUPERFAMILY SSF55469 3 172 2.62E-26 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS17880 eaeb2f5e65f743375bbd9143b7e3e44b 188 Gene3D G3DSA:3.40.109.10 3 176 9.8E-27 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS17880 eaeb2f5e65f743375bbd9143b7e3e44b 188 PIRSF PIRSF000232 1 188 2.7E-49 T 26-04-2016 IPR026021 Putative NAD(P)H nitroreductase YdjA-like KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- RGE_RS17880 eaeb2f5e65f743375bbd9143b7e3e44b 188 Pfam PF00881 Nitroreductase family 21 164 2.5E-15 T 26-04-2016 IPR029479 Nitroreductase RGE_RS17880 eaeb2f5e65f743375bbd9143b7e3e44b 188 PANTHER PTHR23026 5 182 8.3E-30 T 26-04-2016 RGE_RS17880 eaeb2f5e65f743375bbd9143b7e3e44b 188 PANTHER PTHR23026:SF107 5 182 8.3E-30 T 26-04-2016 RGE_RS20315 0540a621a1e2f7323f790cfcf62ac1cd 221 Gene3D G3DSA:3.20.20.70 15 217 2.1E-76 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS20315 0540a621a1e2f7323f790cfcf62ac1cd 221 SUPERFAMILY SSF51391 16 215 4.45E-67 T 26-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20315 0540a621a1e2f7323f790cfcf62ac1cd 221 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 15 217 27.435 T 26-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20315 0540a621a1e2f7323f790cfcf62ac1cd 221 Pfam PF02581 Thiamine monophosphate synthase/TENI 18 199 5.4E-64 T 26-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20315 0540a621a1e2f7323f790cfcf62ac1cd 221 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 18 212 3.5E-62 T 26-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20315 0540a621a1e2f7323f790cfcf62ac1cd 221 PANTHER PTHR20857 5 218 2.6E-78 T 26-04-2016 RGE_RS20315 0540a621a1e2f7323f790cfcf62ac1cd 221 PANTHER PTHR20857:SF15 5 218 2.6E-78 T 26-04-2016 RGE_RS12090 f944d30c0cf019156e56c2afb7ac58ce 347 Gene3D G3DSA:3.40.50.2000 9 159 2.1E-18 T 26-04-2016 RGE_RS12090 f944d30c0cf019156e56c2afb7ac58ce 347 Gene3D G3DSA:3.40.50.2000 176 344 1.1E-48 T 26-04-2016 RGE_RS12090 f944d30c0cf019156e56c2afb7ac58ce 347 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 156 321 3.8E-27 T 26-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 RGE_RS12090 f944d30c0cf019156e56c2afb7ac58ce 347 SUPERFAMILY SSF53756 9 344 1.11E-71 T 26-04-2016 RGE_RS12090 f944d30c0cf019156e56c2afb7ac58ce 347 PANTHER PTHR30160 9 343 1.7E-44 T 26-04-2016 RGE_RS12090 f944d30c0cf019156e56c2afb7ac58ce 347 PANTHER PTHR30160:SF11 9 343 1.7E-44 T 26-04-2016 RGE_RS02430 4d5f6b9f01df0f218e952138ba3f2d56 313 Pfam PF03466 LysR substrate binding domain 93 299 9.6E-28 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS02430 4d5f6b9f01df0f218e952138ba3f2d56 313 SUPERFAMILY SSF46785 9 91 2.87E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02430 4d5f6b9f01df0f218e952138ba3f2d56 313 Gene3D G3DSA:3.40.190.10 98 179 7.3E-24 T 26-04-2016 RGE_RS02430 4d5f6b9f01df0f218e952138ba3f2d56 313 Gene3D G3DSA:3.40.190.10 180 263 8.9E-16 T 26-04-2016 RGE_RS02430 4d5f6b9f01df0f218e952138ba3f2d56 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 70 3.6E-21 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS02430 4d5f6b9f01df0f218e952138ba3f2d56 313 PANTHER PTHR30537 1 304 1.5E-76 T 26-04-2016 RGE_RS02430 4d5f6b9f01df0f218e952138ba3f2d56 313 SUPERFAMILY SSF53850 96 302 2.64E-30 T 26-04-2016 RGE_RS02430 4d5f6b9f01df0f218e952138ba3f2d56 313 Gene3D G3DSA:1.10.10.10 13 95 3.4E-27 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02430 4d5f6b9f01df0f218e952138ba3f2d56 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 2.9E-11 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS02430 4d5f6b9f01df0f218e952138ba3f2d56 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 2.9E-11 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS02430 4d5f6b9f01df0f218e952138ba3f2d56 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 2.9E-11 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS02430 4d5f6b9f01df0f218e952138ba3f2d56 313 PANTHER PTHR30537:SF8 1 304 1.5E-76 T 26-04-2016 RGE_RS02675 9b8cc5415018824b4549205349cdc550 448 PANTHER PTHR30092 1 441 4.6E-105 T 26-04-2016 RGE_RS02675 9b8cc5415018824b4549205349cdc550 448 PIRSF PIRSF004548 1 446 3.8E-112 T 26-04-2016 IPR010364 Uncharacterised protein family, inner membrane CreD RGE_RS02675 9b8cc5415018824b4549205349cdc550 448 Pfam PF06123 Inner membrane protein CreD 5 438 2.6E-132 T 26-04-2016 IPR010364 Uncharacterised protein family, inner membrane CreD RGE_RS04265 a979a3ee9f7ab94c6768fcf750eb3614 214 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 1 92 3.0E-37 T 26-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RGE_RS04265 a979a3ee9f7ab94c6768fcf750eb3614 214 Gene3D G3DSA:2.170.120.20 96 189 9.7E-26 T 26-04-2016 IPR020057 Ribosomal protein L25, beta domain RGE_RS04265 a979a3ee9f7ab94c6768fcf750eb3614 214 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 5 171 3.7E-39 T 26-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RGE_RS04265 a979a3ee9f7ab94c6768fcf750eb3614 214 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 98 185 2.0E-25 T 26-04-2016 IPR020057 Ribosomal protein L25, beta domain RGE_RS04265 a979a3ee9f7ab94c6768fcf750eb3614 214 Gene3D G3DSA:2.40.240.10 1 92 5.8E-28 T 26-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 RGE_RS04265 a979a3ee9f7ab94c6768fcf750eb3614 214 SUPERFAMILY SSF50715 2 189 1.31E-49 T 26-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 RGE_RS04265 a979a3ee9f7ab94c6768fcf750eb3614 214 Pfam PF01386 Ribosomal L25p family 5 89 4.5E-20 T 26-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RGE_RS04265 a979a3ee9f7ab94c6768fcf750eb3614 214 PANTHER PTHR33284 1 210 3.2E-52 T 26-04-2016 RGE_RS04265 a979a3ee9f7ab94c6768fcf750eb3614 214 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 1 183 27.199 T 26-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RGE_RS02545 0be8ebb517c61c9c220c37bc01fce558 393 Gene3D G3DSA:3.40.50.150 177 388 2.7E-52 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS02545 0be8ebb517c61c9c220c37bc01fce558 393 PANTHER PTHR11061 4 390 5.1E-96 T 26-04-2016 RGE_RS02545 0be8ebb517c61c9c220c37bc01fce558 393 SUPERFAMILY SSF88697 1 68 2.65E-12 T 26-04-2016 IPR015947 PUA-like domain RGE_RS02545 0be8ebb517c61c9c220c37bc01fce558 393 SMART SM00359 2 85 1.1E-5 T 26-04-2016 IPR002478 PUA domain GO:0003723 RGE_RS02545 0be8ebb517c61c9c220c37bc01fce558 393 SUPERFAMILY SSF53335 77 389 3.68E-65 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS02545 0be8ebb517c61c9c220c37bc01fce558 393 Gene3D G3DSA:3.30.750.80 71 173 2.6E-35 T 26-04-2016 RGE_RS02545 0be8ebb517c61c9c220c37bc01fce558 393 Gene3D G3DSA:2.30.130.10 1 67 4.0E-19 T 26-04-2016 IPR015947 PUA-like domain RGE_RS02545 0be8ebb517c61c9c220c37bc01fce558 393 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 167 348 6.8E-26 T 26-04-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 RGE_RS02545 0be8ebb517c61c9c220c37bc01fce558 393 PANTHER PTHR11061:SF12 4 390 5.1E-96 T 26-04-2016 RGE_RS20080 012c0312234ce3ade002be110cefa21b 312 PANTHER PTHR10982 1 312 3.7E-123 T 26-04-2016 RGE_RS20080 012c0312234ce3ade002be110cefa21b 312 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 1.8E-93 T 26-04-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RGE_RS20080 012c0312234ce3ade002be110cefa21b 312 SUPERFAMILY SSF55048 128 198 2.88E-16 T 26-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 RGE_RS20080 012c0312234ce3ade002be110cefa21b 312 Gene3D G3DSA:3.40.366.10 198 295 8.6E-63 T 26-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RGE_RS20080 012c0312234ce3ade002be110cefa21b 312 Gene3D G3DSA:3.40.366.10 3 121 8.6E-63 T 26-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RGE_RS20080 012c0312234ce3ade002be110cefa21b 312 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 309 1.4E-34 T 26-04-2016 IPR020801 Polyketide synthase, acyl transferase domain RGE_RS20080 012c0312234ce3ade002be110cefa21b 312 Pfam PF00698 Acyl transferase domain 6 282 5.2E-36 T 26-04-2016 IPR014043 Acyl transferase RGE_RS20080 012c0312234ce3ade002be110cefa21b 312 PIRSF PIRSF000446 1 312 2.2E-99 T 26-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 RGE_RS20080 012c0312234ce3ade002be110cefa21b 312 Gene3D G3DSA:3.30.70.250 124 197 2.3E-27 T 26-04-2016 RGE_RS20080 012c0312234ce3ade002be110cefa21b 312 SUPERFAMILY SSF52151 191 310 7.06E-70 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS20080 012c0312234ce3ade002be110cefa21b 312 SUPERFAMILY SSF52151 4 121 7.06E-70 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS15900 162984c2bb197108356e9e10d9941faf 330 PANTHER PTHR11695 16 328 5.3E-138 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS15900 162984c2bb197108356e9e10d9941faf 330 PANTHER PTHR11695:SF13 16 328 5.3E-138 T 26-04-2016 IPR014188 Acrylyl-CoA reductase AcuI RGE_RS15900 162984c2bb197108356e9e10d9941faf 330 SUPERFAMILY SSF50129 6 147 1.53E-37 T 26-04-2016 IPR011032 GroES-like RGE_RS15900 162984c2bb197108356e9e10d9941faf 330 SUPERFAMILY SSF51735 121 289 3.95E-39 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15900 162984c2bb197108356e9e10d9941faf 330 Pfam PF00107 Zinc-binding dehydrogenase 162 285 7.4E-19 T 26-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RGE_RS15900 162984c2bb197108356e9e10d9941faf 330 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 5 328 2.9E-127 T 26-04-2016 IPR014188 Acrylyl-CoA reductase AcuI RGE_RS15900 162984c2bb197108356e9e10d9941faf 330 SMART SM00829 15 326 8.4E-6 T 26-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RGE_RS15900 162984c2bb197108356e9e10d9941faf 330 Gene3D G3DSA:3.90.180.10 20 137 1.2E-5 T 26-04-2016 IPR011032 GroES-like RGE_RS15900 162984c2bb197108356e9e10d9941faf 330 Gene3D G3DSA:3.40.50.720 138 293 3.2E-77 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11655 d6070fa82b453c133fe52e32e916f3d1 397 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 231 1.4E-21 T 26-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RGE_RS11655 d6070fa82b453c133fe52e32e916f3d1 397 Gene3D G3DSA:2.40.110.10 131 230 1.5E-33 T 26-04-2016 RGE_RS11655 d6070fa82b453c133fe52e32e916f3d1 397 Gene3D G3DSA:1.10.540.10 2 130 7.8E-43 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS11655 d6070fa82b453c133fe52e32e916f3d1 397 PANTHER PTHR10909:SF307 2 396 5.8E-278 T 26-04-2016 RGE_RS11655 d6070fa82b453c133fe52e32e916f3d1 397 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 18 128 1.9E-30 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS11655 d6070fa82b453c133fe52e32e916f3d1 397 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 349 368 - T 26-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RGE_RS11655 d6070fa82b453c133fe52e32e916f3d1 397 PANTHER PTHR10909 2 396 5.8E-278 T 26-04-2016 RGE_RS11655 d6070fa82b453c133fe52e32e916f3d1 397 Gene3D G3DSA:1.20.140.10 231 393 2.0E-42 T 26-04-2016 RGE_RS11655 d6070fa82b453c133fe52e32e916f3d1 397 SUPERFAMILY SSF47203 247 395 4.99E-43 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS11655 d6070fa82b453c133fe52e32e916f3d1 397 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 248 389 3.2E-28 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS11655 d6070fa82b453c133fe52e32e916f3d1 397 SUPERFAMILY SSF56645 4 242 5.37E-74 T 26-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RGE_RS18340 7b9cbe98cd9287d867c7e91a931286e7 368 Gene3D G3DSA:3.60.21.10 4 235 2.7E-36 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS18340 7b9cbe98cd9287d867c7e91a931286e7 368 PANTHER PTHR30337:SF7 1 222 2.4E-15 T 26-04-2016 RGE_RS18340 7b9cbe98cd9287d867c7e91a931286e7 368 PANTHER PTHR30337 1 222 2.4E-15 T 26-04-2016 RGE_RS18340 7b9cbe98cd9287d867c7e91a931286e7 368 SUPERFAMILY SSF56300 3 308 7.28E-35 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS18340 7b9cbe98cd9287d867c7e91a931286e7 368 PIRSF PIRSF033093 1 368 2.2E-93 T 26-04-2016 IPR014577 Uncharacterised conserved protein UCP033093, metallophosphoesterase-type RGE_RS18340 7b9cbe98cd9287d867c7e91a931286e7 368 Pfam PF00149 Calcineurin-like phosphoesterase 3 96 1.1E-9 T 26-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RGE_RS23310 127f65d48e614f26264cafac675497da 149 Gene3D G3DSA:3.10.450.40 75 131 5.3E-5 T 26-04-2016 RGE_RS23310 127f65d48e614f26264cafac675497da 149 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 5 136 2.2E-16 T 26-04-2016 IPR017737 Type VI secretion system, lysozyme-related protein RGE_RS23310 127f65d48e614f26264cafac675497da 149 Pfam PF04965 Gene 25-like lysozyme 32 120 2.1E-11 T 26-04-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD RGE_RS23310 127f65d48e614f26264cafac675497da 149 SUPERFAMILY SSF160719 31 128 4.18E-6 T 26-04-2016 RGE_RS07735 f52469cb3c6607a846caf1e00eb8c3e3 468 Pfam PF01565 FAD binding domain 40 177 1.1E-34 T 26-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RGE_RS07735 f52469cb3c6607a846caf1e00eb8c3e3 468 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 467 1.1E-55 T 26-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RGE_RS07735 f52469cb3c6607a846caf1e00eb8c3e3 468 PANTHER PTHR11748:SF76 1 468 2.7E-186 T 26-04-2016 RGE_RS07735 f52469cb3c6607a846caf1e00eb8c3e3 468 SUPERFAMILY SSF55103 191 467 3.6E-57 T 26-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RGE_RS07735 f52469cb3c6607a846caf1e00eb8c3e3 468 SUPERFAMILY SSF56176 3 217 1.87E-74 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS07735 f52469cb3c6607a846caf1e00eb8c3e3 468 Gene3D G3DSA:1.10.45.10 428 467 9.3E-16 T 26-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RGE_RS07735 f52469cb3c6607a846caf1e00eb8c3e3 468 PANTHER PTHR11748 1 468 2.7E-186 T 26-04-2016 RGE_RS07735 f52469cb3c6607a846caf1e00eb8c3e3 468 Gene3D G3DSA:3.30.465.10 96 217 2.0E-36 T 26-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RGE_RS07735 f52469cb3c6607a846caf1e00eb8c3e3 468 Gene3D G3DSA:3.30.43.10 3 95 1.1E-21 T 26-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RGE_RS10115 624d69448d3dc064c545573d9b025ddb 296 PANTHER PTHR14194:SF73 1 290 4.5E-71 T 26-04-2016 RGE_RS10115 624d69448d3dc064c545573d9b025ddb 296 Pfam PF13460 NAD(P)H-binding 8 192 8.6E-16 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS10115 624d69448d3dc064c545573d9b025ddb 296 SUPERFAMILY SSF51735 4 289 1.64E-47 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS10115 624d69448d3dc064c545573d9b025ddb 296 PANTHER PTHR14194 1 290 4.5E-71 T 26-04-2016 RGE_RS10115 624d69448d3dc064c545573d9b025ddb 296 Gene3D G3DSA:3.40.50.720 2 225 2.8E-31 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 SUPERFAMILY SSF53335 277 475 3.46E-51 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 Gene3D G3DSA:3.30.450.20 719 846 3.0E-12 T 26-04-2016 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 SUPERFAMILY SSF55785 717 835 6.28E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 Gene3D G3DSA:3.40.50.180 14 198 3.8E-64 T 26-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 SMART SM00138 211 476 5.9E-83 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 PRINTS PR00996 Glutamate methyltransferase family signature 435 458 1.87E-25 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 PRINTS PR00996 Glutamate methyltransferase family signature 311 331 1.87E-25 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 PRINTS PR00996 Glutamate methyltransferase family signature 233 246 1.87E-25 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 PRINTS PR00996 Glutamate methyltransferase family signature 270 282 1.87E-25 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 PRINTS PR00996 Glutamate methyltransferase family signature 416 430 1.87E-25 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 PRINTS PR00996 Glutamate methyltransferase family signature 349 365 1.87E-25 T 26-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 Pfam PF03705 CheR methyltransferase, all-alpha domain 213 263 3.6E-14 T 26-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 Pfam PF13596 PAS domain 730 835 5.9E-28 T 26-04-2016 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 Pfam PF01739 CheR methyltransferase, SAM binding domain 278 468 1.3E-51 T 26-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 SUPERFAMILY SSF52738 16 198 3.01E-55 T 26-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 SUPERFAMILY SSF47757 209 279 4.71E-13 T 26-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 Pfam PF01339 CheB methylesterase 19 194 6.0E-55 T 26-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 Gene3D G3DSA:1.10.155.10 207 274 3.1E-15 T 26-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 PANTHER PTHR24422 107 846 9.4E-229 T 26-04-2016 RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 Gene3D G3DSA:3.40.50.150 276 475 2.8E-61 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS17790 ab0b1cfc3e8748875029375660148647 847 PANTHER PTHR24422:SF6 107 846 9.4E-229 T 26-04-2016 RGE_RS00360 520cf90f938728869fc1021b935f0214 185 SUPERFAMILY SSF53697 2 179 1.14E-22 T 26-04-2016 RGE_RS00360 520cf90f938728869fc1021b935f0214 185 PANTHER PTHR30390:SF5 2 184 1.2E-30 T 26-04-2016 RGE_RS00360 520cf90f938728869fc1021b935f0214 185 Gene3D G3DSA:3.40.50.10490 2 179 2.6E-28 T 26-04-2016 RGE_RS00360 520cf90f938728869fc1021b935f0214 185 PANTHER PTHR30390 2 184 1.2E-30 T 26-04-2016 RGE_RS00360 520cf90f938728869fc1021b935f0214 185 Pfam PF13580 SIS domain 9 129 9.1E-11 T 26-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RGE_RS02095 000e50ae5d58012538707cded2f31fcc 343 PANTHER PTHR22916 12 212 5.3E-43 T 26-04-2016 RGE_RS02095 000e50ae5d58012538707cded2f31fcc 343 Gene3D G3DSA:3.90.550.10 12 215 7.3E-41 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS02095 000e50ae5d58012538707cded2f31fcc 343 SUPERFAMILY SSF53448 11 257 1.46E-52 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS02095 000e50ae5d58012538707cded2f31fcc 343 Pfam PF00535 Glycosyl transferase family 2 15 140 2.6E-22 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS16085 6178407dff5cd748be90ee9328d7f795 242 Pfam PF00072 Response regulator receiver domain 4 116 1.3E-12 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS16085 6178407dff5cd748be90ee9328d7f795 242 SMART SM00850 138 235 1.8E-4 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS16085 6178407dff5cd748be90ee9328d7f795 242 Gene3D G3DSA:2.40.50.40 130 203 8.1E-8 T 26-04-2016 RGE_RS16085 6178407dff5cd748be90ee9328d7f795 242 PANTHER PTHR26402:SF577 2 121 3.6E-14 T 26-04-2016 RGE_RS16085 6178407dff5cd748be90ee9328d7f795 242 Gene3D G3DSA:3.40.50.2300 1 129 2.3E-19 T 26-04-2016 RGE_RS16085 6178407dff5cd748be90ee9328d7f795 242 SUPERFAMILY SSF52172 1 129 4.84E-17 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS16085 6178407dff5cd748be90ee9328d7f795 242 Pfam PF04397 LytTr DNA-binding domain 140 232 1.0E-4 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS16085 6178407dff5cd748be90ee9328d7f795 242 PANTHER PTHR26402 2 121 3.6E-14 T 26-04-2016 RGE_RS16085 6178407dff5cd748be90ee9328d7f795 242 SMART SM00448 2 117 8.1E-14 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS22005 a8e4dff0358d2ab026e4e96a122c102e 718 PANTHER PTHR11757 32 709 7.9E-127 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22005 a8e4dff0358d2ab026e4e96a122c102e 718 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 485 503 1.1E-35 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22005 a8e4dff0358d2ab026e4e96a122c102e 718 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 569 589 1.1E-35 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22005 a8e4dff0358d2ab026e4e96a122c102e 718 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 643 665 1.1E-35 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22005 a8e4dff0358d2ab026e4e96a122c102e 718 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 511 535 1.1E-35 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22005 a8e4dff0358d2ab026e4e96a122c102e 718 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 539 558 1.1E-35 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS22005 a8e4dff0358d2ab026e4e96a122c102e 718 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 31 427 3.6E-31 T 26-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RGE_RS22005 a8e4dff0358d2ab026e4e96a122c102e 718 SUPERFAMILY SSF50993 28 427 2.88E-36 T 26-04-2016 RGE_RS22005 a8e4dff0358d2ab026e4e96a122c102e 718 Pfam PF00326 Prolyl oligopeptidase family 502 711 6.2E-54 T 26-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RGE_RS22005 a8e4dff0358d2ab026e4e96a122c102e 718 SUPERFAMILY SSF53474 453 710 4.59E-45 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS22005 a8e4dff0358d2ab026e4e96a122c102e 718 Gene3D G3DSA:3.40.50.1820 381 710 2.9E-88 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 18 198 2.3E-4 T 26-04-2016 RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 154 182 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 25 260 3.7E-62 T 26-04-2016 RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 8.8E-33 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 93 104 8.8E-33 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 8.8E-33 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 8.8E-33 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 8.8E-33 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 8.8E-33 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 PANTHER PTHR24322 167 201 3.1E-50 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 PANTHER PTHR24322 22 150 3.1E-50 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 Gene3D G3DSA:3.40.50.720 8 261 2.7E-87 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 SUPERFAMILY SSF51735 13 261 2.7E-80 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 1.8E-10 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 1.8E-10 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS00620 a818476849e39ee69c3a8363a3965766 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 1.8E-10 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11835 9d75cf76e3857bfe777f7ff16a86b9f3 213 PANTHER PTHR36917:SF1 1 20 1.9E-50 T 26-04-2016 RGE_RS11835 9d75cf76e3857bfe777f7ff16a86b9f3 213 PANTHER PTHR36917:SF1 50 212 1.9E-50 T 26-04-2016 RGE_RS11835 9d75cf76e3857bfe777f7ff16a86b9f3 213 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 205 18.652 T 26-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RGE_RS11835 9d75cf76e3857bfe777f7ff16a86b9f3 213 PANTHER PTHR36917 1 20 1.9E-50 T 26-04-2016 RGE_RS11835 9d75cf76e3857bfe777f7ff16a86b9f3 213 PANTHER PTHR36917 50 212 1.9E-50 T 26-04-2016 RGE_RS11835 9d75cf76e3857bfe777f7ff16a86b9f3 213 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 204 3.7E-50 T 26-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RGE_RS11835 9d75cf76e3857bfe777f7ff16a86b9f3 213 Pfam PF04279 Intracellular septation protein A 1 204 2.7E-66 T 26-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RGE_RS13545 e0c1197c4bb23c10d89272b7d9e7e2ee 653 Pfam PF12704 MacB-like periplasmic core domain 277 494 1.1E-38 T 26-04-2016 IPR025857 MacB-like periplasmic core domain RGE_RS13545 e0c1197c4bb23c10d89272b7d9e7e2ee 653 Gene3D G3DSA:3.40.50.300 10 231 2.3E-67 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13545 e0c1197c4bb23c10d89272b7d9e7e2ee 653 Pfam PF00005 ABC transporter 31 179 6.1E-30 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS13545 e0c1197c4bb23c10d89272b7d9e7e2ee 653 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS13545 e0c1197c4bb23c10d89272b7d9e7e2ee 653 SMART SM00382 40 227 6.3E-15 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS13545 e0c1197c4bb23c10d89272b7d9e7e2ee 653 SUPERFAMILY SSF52540 11 244 9.66E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13545 e0c1197c4bb23c10d89272b7d9e7e2ee 653 PANTHER PTHR24220:SF578 13 242 1.5E-93 T 26-04-2016 RGE_RS13545 e0c1197c4bb23c10d89272b7d9e7e2ee 653 PANTHER PTHR24220:SF578 418 574 1.5E-93 T 26-04-2016 RGE_RS13545 e0c1197c4bb23c10d89272b7d9e7e2ee 653 Pfam PF02687 FtsX-like permease family 533 646 1.7E-21 T 26-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RGE_RS13545 e0c1197c4bb23c10d89272b7d9e7e2ee 653 PANTHER PTHR24220 13 242 1.5E-93 T 26-04-2016 RGE_RS13545 e0c1197c4bb23c10d89272b7d9e7e2ee 653 PANTHER PTHR24220 418 574 1.5E-93 T 26-04-2016 RGE_RS22730 85a36839e8b10c54e206721587377ec3 164 Gene3D G3DSA:1.10.10.10 7 59 3.2E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22730 85a36839e8b10c54e206721587377ec3 164 Hamap MF_01114 Regulatory protein RecX [recX]. 5 155 13.236 T 26-04-2016 IPR003783 Regulatory protein RecX GO:0006282 RGE_RS22730 85a36839e8b10c54e206721587377ec3 164 PANTHER PTHR33602 8 164 5.2E-20 T 26-04-2016 RGE_RS22730 85a36839e8b10c54e206721587377ec3 164 Pfam PF02631 RecX family 42 149 5.6E-23 T 26-04-2016 IPR003783 Regulatory protein RecX GO:0006282 RGE_RS22730 85a36839e8b10c54e206721587377ec3 164 Gene3D G3DSA:1.10.10.10 106 148 9.9E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22730 85a36839e8b10c54e206721587377ec3 164 Gene3D G3DSA:1.10.10.10 60 100 3.0E-4 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 PANTHER PTHR21060 4 405 3.5E-199 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 SUPERFAMILY SSF53067 157 395 4.81E-81 T 26-04-2016 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 SUPERFAMILY SSF53067 7 194 3.37E-66 T 26-04-2016 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 Pfam PF00871 Acetokinase family 8 390 2.0E-142 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 Gene3D G3DSA:3.30.420.40 206 395 3.4E-71 T 26-04-2016 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 TIGRFAM TIGR00016 ackA: acetate kinase 7 395 1.2E-143 T 26-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 PIRSF PIRSF000722 4 399 1.6E-138 T 26-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 203 220 - T 26-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 PRINTS PR00471 Acetate kinase family signature 322 338 8.5E-43 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 PRINTS PR00471 Acetate kinase family signature 300 313 8.5E-43 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 PRINTS PR00471 Acetate kinase family signature 8 19 8.5E-43 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 PRINTS PR00471 Acetate kinase family signature 377 389 8.5E-43 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 PRINTS PR00471 Acetate kinase family signature 173 186 8.5E-43 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 PRINTS PR00471 Acetate kinase family signature 203 224 8.5E-43 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 8 19 - T 26-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 PANTHER PTHR21060:SF15 4 405 3.5E-199 T 26-04-2016 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 Hamap MF_00020 Acetate kinase [ackA]. 1 400 170.68 T 26-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS04870 458452bd1e6d48f4c600df979ad85cb6 407 Gene3D G3DSA:3.30.420.40 86 205 4.8E-9 T 26-04-2016 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 Pfam PF00842 Alanine racemase, C-terminal domain 232 357 1.2E-37 T 26-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 Gene3D G3DSA:2.40.37.10 208 360 3.3E-51 T 26-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 Pfam PF01168 Alanine racemase, N-terminal domain 10 216 1.3E-64 T 26-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 TIGRFAM TIGR00492 alr: alanine racemase 6 357 2.4E-96 T 26-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 32 42 - T 26-04-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 SMART SM01005 231 360 2.2E-63 T 26-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 PANTHER PTHR30511:SF0 1 355 1.3E-117 T 26-04-2016 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 Hamap MF_01201 Alanine racemase. 2 360 31.57 T 26-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 Gene3D G3DSA:3.20.20.10 12 207 1.4E-59 T 26-04-2016 IPR029066 PLP-binding barrel RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 PANTHER PTHR30511 1 355 1.3E-117 T 26-04-2016 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 SUPERFAMILY SSF50621 225 359 3.49E-45 T 26-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 SUPERFAMILY SSF51419 9 232 5.23E-57 T 26-04-2016 IPR029066 PLP-binding barrel RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 PRINTS PR00992 Alanine racemase signature 27 43 2.7E-60 T 26-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 PRINTS PR00992 Alanine racemase signature 61 79 2.7E-60 T 26-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 PRINTS PR00992 Alanine racemase signature 247 262 2.7E-60 T 26-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 PRINTS PR00992 Alanine racemase signature 285 302 2.7E-60 T 26-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 PRINTS PR00992 Alanine racemase signature 189 216 2.7E-60 T 26-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 PRINTS PR00992 Alanine racemase signature 342 355 2.7E-60 T 26-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 PRINTS PR00992 Alanine racemase signature 264 279 2.7E-60 T 26-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 PRINTS PR00992 Alanine racemase signature 121 133 2.7E-60 T 26-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS00825 c7d940846f6347b65ee0dccfbe264307 362 PRINTS PR00992 Alanine racemase signature 155 166 2.7E-60 T 26-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS17050 f83a5ed3622dd0e9de854bd26720d1c5 274 SUPERFAMILY SSF161098 17 272 2.52E-59 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS17050 f83a5ed3622dd0e9de854bd26720d1c5 274 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 268 1.2E-16 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS17050 f83a5ed3622dd0e9de854bd26720d1c5 274 Gene3D G3DSA:1.10.3720.10 20 272 1.3E-56 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS17050 f83a5ed3622dd0e9de854bd26720d1c5 274 PANTHER PTHR30193 19 272 7.4E-81 T 26-04-2016 RGE_RS17050 f83a5ed3622dd0e9de854bd26720d1c5 274 PANTHER PTHR30193:SF20 19 272 7.4E-81 T 26-04-2016 RGE_RS10325 da11eab573158dde5821dd86e5ecd380 522 Pfam PF04773 FecR protein 100 204 2.1E-15 T 26-04-2016 IPR006860 FecR protein RGE_RS10325 da11eab573158dde5821dd86e5ecd380 522 Pfam PF01476 LysM domain 12 58 1.0E-7 T 26-04-2016 IPR018392 LysM domain RGE_RS10325 da11eab573158dde5821dd86e5ecd380 522 PIRSF PIRSF029644 1 505 4.3E-122 T 26-04-2016 IPR016930 Uncharacterised conserved protein UCP029644, LysM, PA4035 RGE_RS10325 da11eab573158dde5821dd86e5ecd380 522 Gene3D G3DSA:3.10.350.10 12 59 2.6E-6 T 26-04-2016 IPR018392 LysM domain RGE_RS10325 da11eab573158dde5821dd86e5ecd380 522 SMART SM00257 11 58 0.0011 T 26-04-2016 IPR018392 LysM domain RGE_RS10325 da11eab573158dde5821dd86e5ecd380 522 SUPERFAMILY SSF49265 402 500 9.85E-5 T 26-04-2016 IPR003961 Fibronectin type III GO:0005515 RGE_RS10325 da11eab573158dde5821dd86e5ecd380 522 SUPERFAMILY SSF54106 10 58 1.44E-5 T 26-04-2016 IPR018392 LysM domain RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 SMART SM00387 605 717 1.2E-34 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 SMART SM00086 424 466 7.5E-6 T 26-04-2016 IPR001610 PAC motif RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 Pfam PF08447 PAS fold 395 459 3.5E-15 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 Gene3D G3DSA:3.30.565.10 561 719 2.6E-44 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 SUPERFAMILY SSF47384 477 561 3.14E-23 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 Pfam PF00512 His Kinase A (phospho-acceptor) domain 493 560 2.8E-21 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 Gene3D G3DSA:1.10.287.130 485 556 1.1E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 Gene3D G3DSA:3.30.450.20 337 481 1.2E-26 T 26-04-2016 RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 PANTHER PTHR24423 8 18 6.6E-101 T 26-04-2016 RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 PANTHER PTHR24423 334 718 6.6E-101 T 26-04-2016 RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 SMART SM00388 492 560 4.6E-24 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 606 715 2.1E-23 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 Gene3D G3DSA:3.30.450.20 140 259 1.2E-4 T 26-04-2016 RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 PRINTS PR00344 Bacterial sensor protein C-terminal signature 677 695 1.1E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 PRINTS PR00344 Bacterial sensor protein C-terminal signature 701 714 1.1E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 PRINTS PR00344 Bacterial sensor protein C-terminal signature 643 657 1.1E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 SUPERFAMILY SSF55785 356 468 1.93E-18 T 26-04-2016 IPR000014 PAS domain RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 347 470 2.2E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS03340 386d621ec6d4fa0edcd02820e992b7c7 722 SUPERFAMILY SSF55874 549 715 6.42E-46 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS05335 c575f05795d3f73c22fdd41dc172c9e3 444 SUPERFAMILY SSF51735 124 247 1.97E-5 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05335 c575f05795d3f73c22fdd41dc172c9e3 444 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 39 444 1.9E-149 T 26-04-2016 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 RGE_RS05335 c575f05795d3f73c22fdd41dc172c9e3 444 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 31 444 3.1E-134 T 26-04-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase RGE_RS05335 c575f05795d3f73c22fdd41dc172c9e3 444 Pfam PF02397 Bacterial sugar transferase 254 438 5.5E-56 T 26-04-2016 IPR003362 Bacterial sugar transferase RGE_RS05335 c575f05795d3f73c22fdd41dc172c9e3 444 PANTHER PTHR30576 31 444 6.9E-146 T 26-04-2016 RGE_RS05335 c575f05795d3f73c22fdd41dc172c9e3 444 PANTHER PTHR30576:SF0 31 444 6.9E-146 T 26-04-2016 RGE_RS05335 c575f05795d3f73c22fdd41dc172c9e3 444 Pfam PF13727 CoA-binding domain 50 218 7.4E-24 T 26-04-2016 RGE_RS18100 4c910be77ed9e6f27adc280b40d0544e 187 PANTHER PTHR13256 1 182 7.7E-40 T 26-04-2016 RGE_RS18100 4c910be77ed9e6f27adc280b40d0544e 187 Pfam PF13302 Acetyltransferase (GNAT) domain 16 155 2.6E-32 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS18100 4c910be77ed9e6f27adc280b40d0544e 187 SUPERFAMILY SSF55729 5 179 4.37E-45 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS18100 4c910be77ed9e6f27adc280b40d0544e 187 Gene3D G3DSA:3.40.630.30 5 179 2.4E-48 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 154 182 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.7E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.7E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 1.7E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 1.7E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 1.7E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 157 1.7E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 Gene3D G3DSA:3.40.50.720 4 258 8.9E-84 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 8.1E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 8.1E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 8.1E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 PANTHER PTHR24322 167 199 3.4E-60 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 PANTHER PTHR24322 14 138 3.4E-60 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 SUPERFAMILY SSF51735 5 258 1.13E-77 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS07880 f75d7a2186cc9369b478234febeef244 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 258 1.2E-58 T 26-04-2016 RGE_RS15300 772f2601bb6b9ad55da2c5d4d577088b 270 Gene3D G3DSA:1.10.150.240 24 101 1.8E-30 T 26-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RGE_RS15300 772f2601bb6b9ad55da2c5d4d577088b 270 PANTHER PTHR18901 1 270 1.7E-100 T 26-04-2016 RGE_RS15300 772f2601bb6b9ad55da2c5d4d577088b 270 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 35 204 7.0E-12 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS15300 772f2601bb6b9ad55da2c5d4d577088b 270 Gene3D G3DSA:3.40.50.1000 4 23 2.5E-32 T 26-04-2016 IPR023214 HAD-like domain RGE_RS15300 772f2601bb6b9ad55da2c5d4d577088b 270 Gene3D G3DSA:3.40.50.1000 104 257 2.5E-32 T 26-04-2016 IPR023214 HAD-like domain RGE_RS15300 772f2601bb6b9ad55da2c5d4d577088b 270 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 5 256 3.9E-100 T 26-04-2016 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 RGE_RS15300 772f2601bb6b9ad55da2c5d4d577088b 270 PANTHER PTHR18901:SF45 1 270 1.7E-100 T 26-04-2016 RGE_RS15300 772f2601bb6b9ad55da2c5d4d577088b 270 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 270 120.078 T 26-04-2016 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 RGE_RS15300 772f2601bb6b9ad55da2c5d4d577088b 270 Pfam PF00702 haloacid dehalogenase-like hydrolase 7 199 2.1E-6 T 26-04-2016 RGE_RS15300 772f2601bb6b9ad55da2c5d4d577088b 270 SUPERFAMILY SSF56784 6 256 8.27E-50 T 26-04-2016 IPR023214 HAD-like domain RGE_RS21240 ad0409a40b811483017cba20737a3aea 141 PANTHER PTHR30204 3 133 1.5E-22 T 26-04-2016 RGE_RS21240 ad0409a40b811483017cba20737a3aea 141 Gene3D G3DSA:1.10.1660.10 64 125 7.3E-16 T 26-04-2016 RGE_RS21240 ad0409a40b811483017cba20737a3aea 141 SUPERFAMILY SSF46955 11 126 1.14E-26 T 26-04-2016 IPR009061 Putative DNA-binding domain RGE_RS21240 ad0409a40b811483017cba20737a3aea 141 Pfam PF09278 MerR, DNA binding 52 118 2.9E-15 T 26-04-2016 IPR015358 Transcription regulator MerR, DNA binding RGE_RS21240 ad0409a40b811483017cba20737a3aea 141 Gene3D G3DSA:1.10.1660.10 9 63 3.9E-21 T 26-04-2016 RGE_RS21240 ad0409a40b811483017cba20737a3aea 141 Pfam PF00376 MerR family regulatory protein 12 47 2.7E-10 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS21240 ad0409a40b811483017cba20737a3aea 141 SMART SM00422 11 78 2.8E-17 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 Pfam PF13638 PIN domain 95 244 3.3E-37 T 26-04-2016 IPR002716 PIN domain RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 Gene3D G3DSA:3.40.50.1010 195 250 5.3E-11 T 26-04-2016 IPR029060 PIN domain-like RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 Gene3D G3DSA:3.40.50.1010 94 153 5.3E-11 T 26-04-2016 IPR029060 PIN domain-like RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 PANTHER PTHR30473 291 555 5.2E-176 T 26-04-2016 RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 PANTHER PTHR30473 92 272 5.2E-176 T 26-04-2016 RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 Pfam PF02562 PhoH-like protein 342 541 5.7E-51 T 26-04-2016 IPR003714 PhoH-like protein GO:0005524 RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 Gene3D G3DSA:3.40.50.300 340 554 1.3E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 SUPERFAMILY SSF88723 195 247 8.44E-12 T 26-04-2016 IPR029060 PIN domain-like RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 SUPERFAMILY SSF88723 93 154 8.44E-12 T 26-04-2016 IPR029060 PIN domain-like RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 PANTHER PTHR30473:SF2 291 555 5.2E-176 T 26-04-2016 RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 PANTHER PTHR30473:SF2 92 272 5.2E-176 T 26-04-2016 RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 SUPERFAMILY SSF52540 215 276 4.48E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 SUPERFAMILY SSF52540 341 534 4.48E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15885 ea2935342b6255fc6a8ee7479540a79c 555 SMART SM00670 93 232 2.4E-6 T 26-04-2016 IPR002716 PIN domain RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 Pfam PF00448 SRP54-type protein, GTPase domain 168 372 3.8E-67 T 26-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 Gene3D G3DSA:1.20.120.140 98 179 2.9E-23 T 26-04-2016 RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 97 372 5.0E-92 T 26-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 SMART SM00382 167 324 3.9E-4 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 SMART SM00962 168 373 1.8E-104 T 26-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 SMART SM00963 78 154 1.1E-11 T 26-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 PANTHER PTHR11564 68 373 6.1E-106 T 26-04-2016 RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 SUPERFAMILY SSF47364 73 148 9.55E-16 T 26-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 Pfam PF02881 SRP54-type protein, helical bundle domain 86 148 2.3E-9 T 26-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 SUPERFAMILY SSF52540 167 372 9.48E-44 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 346 359 - T 26-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 Gene3D G3DSA:3.40.50.300 180 372 1.2E-74 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 97 373 54.381 T 26-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RGE_RS20660 48a3b009919bd54918fd4856beab8b85 373 PANTHER PTHR11564:SF16 68 373 6.1E-106 T 26-04-2016 RGE_RS03085 8fb07a7fc98973a58cb957e0bd7f27f6 225 SUPERFAMILY SSF161098 5 216 2.88E-47 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS03085 8fb07a7fc98973a58cb957e0bd7f27f6 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 219 3.4E-18 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS03085 8fb07a7fc98973a58cb957e0bd7f27f6 225 Gene3D G3DSA:1.10.3720.10 6 218 3.4E-41 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS03085 8fb07a7fc98973a58cb957e0bd7f27f6 225 PANTHER PTHR30183 1 225 1.4E-67 T 26-04-2016 RGE_RS03085 8fb07a7fc98973a58cb957e0bd7f27f6 225 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 13 219 6.4E-71 T 26-04-2016 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 RGE_RS04220 8e2d9c3709d922e3b70530632adab5cd 201 SUPERFAMILY SSF54211 8 92 7.21E-32 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS04220 8e2d9c3709d922e3b70530632adab5cd 201 Gene3D G3DSA:3.30.230.40 8 94 1.1E-37 T 26-04-2016 RGE_RS04220 8e2d9c3709d922e3b70530632adab5cd 201 PANTHER PTHR23133 8 201 2.8E-99 T 26-04-2016 RGE_RS04220 8e2d9c3709d922e3b70530632adab5cd 201 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 37 180 1.6E-62 T 26-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RGE_RS04220 8e2d9c3709d922e3b70530632adab5cd 201 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 162 174 - T 26-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RGE_RS04220 8e2d9c3709d922e3b70530632adab5cd 201 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 8 201 41.746 T 26-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RGE_RS04220 8e2d9c3709d922e3b70530632adab5cd 201 SUPERFAMILY SSF54211 94 184 1.16E-33 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS04220 8e2d9c3709d922e3b70530632adab5cd 201 Gene3D G3DSA:3.30.230.40 96 201 1.2E-29 T 26-04-2016 RGE_RS04220 8e2d9c3709d922e3b70530632adab5cd 201 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 67 80 - T 26-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RGE_RS04220 8e2d9c3709d922e3b70530632adab5cd 201 PANTHER PTHR23133:SF2 8 201 2.8E-99 T 26-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RGE_RS19235 d579865db61880f3534b69f525e429f3 185 SUPERFAMILY SSF50341 33 176 1.96E-38 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS19235 d579865db61880f3534b69f525e429f3 185 SMART SM00260 31 172 1.3E-43 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS19235 d579865db61880f3534b69f525e429f3 185 Gene3D G3DSA:2.40.50.180 73 111 1.5E-9 T 26-04-2016 RGE_RS19235 d579865db61880f3534b69f525e429f3 185 Pfam PF01584 CheW-like domain 35 175 1.5E-38 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS19235 d579865db61880f3534b69f525e429f3 185 PANTHER PTHR22617 35 185 9.1E-49 T 26-04-2016 RGE_RS19235 d579865db61880f3534b69f525e429f3 185 Gene3D G3DSA:2.30.30.40 112 151 9.6E-6 T 26-04-2016 RGE_RS13255 8c19590f8a9cd2b738e778dac91ca8b4 262 Gene3D G3DSA:1.20.1180.10 194 262 1.2E-19 T 26-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RGE_RS13255 8c19590f8a9cd2b738e778dac91ca8b4 262 Gene3D G3DSA:2.160.10.10 3 188 8.4E-50 T 26-04-2016 RGE_RS13255 8c19590f8a9cd2b738e778dac91ca8b4 262 PIRSF PIRSF000456 1 262 2.2E-100 T 26-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RGE_RS13255 8c19590f8a9cd2b738e778dac91ca8b4 262 SUPERFAMILY SSF51161 3 261 1.22E-75 T 26-04-2016 IPR011004 Trimeric LpxA-like RGE_RS13255 8c19590f8a9cd2b738e778dac91ca8b4 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 3 35 5.1E-4 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS13255 8c19590f8a9cd2b738e778dac91ca8b4 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 105 139 6.8E-10 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS13255 8c19590f8a9cd2b738e778dac91ca8b4 262 PANTHER PTHR23416:SF8 1 254 2.8E-116 T 26-04-2016 RGE_RS13255 8c19590f8a9cd2b738e778dac91ca8b4 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 4 260 1.1E-97 T 26-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RGE_RS13255 8c19590f8a9cd2b738e778dac91ca8b4 262 PANTHER PTHR23416 1 254 2.8E-116 T 26-04-2016 RGE_RS13255 8c19590f8a9cd2b738e778dac91ca8b4 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 262 44.536 T 26-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RGE_RS13255 8c19590f8a9cd2b738e778dac91ca8b4 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 176 260 4.5E-25 T 26-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 3.3E-32 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 3.3E-32 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 158 3.3E-32 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 207 3.3E-32 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 231 251 3.3E-32 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 3.3E-32 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 30 267 1.5E-59 T 26-04-2016 RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 Gene3D G3DSA:3.40.50.720 10 267 1.4E-75 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 PANTHER PTHR24321 12 269 3.2E-43 T 26-04-2016 RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 PANTHER PTHR24321:SF6 12 269 3.2E-43 T 26-04-2016 RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 SUPERFAMILY SSF51735 13 267 1.74E-71 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 1.0E-7 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 1.0E-7 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 1.0E-7 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14510 fa22c4882be6d64244dbccbd4f56bdaa 272 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 156 184 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS18515 f83eb0c5975ad856063274b6816fd99e 379 Gene3D G3DSA:2.40.50.100 249 294 4.0E-16 T 26-04-2016 RGE_RS18515 f83eb0c5975ad856063274b6816fd99e 379 Gene3D G3DSA:2.40.50.100 358 371 4.0E-16 T 26-04-2016 RGE_RS18515 f83eb0c5975ad856063274b6816fd99e 379 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS18515 f83eb0c5975ad856063274b6816fd99e 379 Gene3D G3DSA:3.40.50.300 4 244 4.9E-67 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18515 f83eb0c5975ad856063274b6816fd99e 379 SUPERFAMILY SSF50331 246 371 1.21E-25 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS18515 f83eb0c5975ad856063274b6816fd99e 379 PANTHER PTHR24220 5 304 1.2E-143 T 26-04-2016 RGE_RS18515 f83eb0c5975ad856063274b6816fd99e 379 PANTHER PTHR24220:SF151 5 304 1.2E-143 T 26-04-2016 RGE_RS18515 f83eb0c5975ad856063274b6816fd99e 379 Gene3D G3DSA:2.40.50.140 295 356 3.7E-9 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS18515 f83eb0c5975ad856063274b6816fd99e 379 SMART SM00382 30 214 6.5E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS18515 f83eb0c5975ad856063274b6816fd99e 379 Pfam PF00005 ABC transporter 22 163 1.3E-30 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS18515 f83eb0c5975ad856063274b6816fd99e 379 Pfam PF08402 TOBE domain 290 364 5.8E-10 T 26-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RGE_RS18515 f83eb0c5975ad856063274b6816fd99e 379 SUPERFAMILY SSF52540 8 251 3.82E-76 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS14105 3a5165b57126acda875eec800f56f2bb 382 PANTHER PTHR30483:SF20 9 381 7.0E-80 T 26-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RGE_RS14105 3a5165b57126acda875eec800f56f2bb 382 Pfam PF13458 Periplasmic binding protein 30 374 4.9E-62 T 26-04-2016 IPR028081 Leucine-binding protein domain RGE_RS14105 3a5165b57126acda875eec800f56f2bb 382 SUPERFAMILY SSF53822 30 375 1.62E-92 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS14105 3a5165b57126acda875eec800f56f2bb 382 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 284 297 6.0E-8 T 26-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RGE_RS14105 3a5165b57126acda875eec800f56f2bb 382 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 52 68 6.0E-8 T 26-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RGE_RS14105 3a5165b57126acda875eec800f56f2bb 382 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 30 46 6.0E-8 T 26-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RGE_RS14105 3a5165b57126acda875eec800f56f2bb 382 Gene3D G3DSA:3.40.50.2300 30 231 3.6E-65 T 26-04-2016 RGE_RS14105 3a5165b57126acda875eec800f56f2bb 382 PANTHER PTHR30483 9 381 7.0E-80 T 26-04-2016 RGE_RS13265 d3aea8b714074b49dfa4ea9d5353b786 341 SUPERFAMILY SSF51161 31 319 5.71E-74 T 26-04-2016 IPR011004 Trimeric LpxA-like RGE_RS13265 d3aea8b714074b49dfa4ea9d5353b786 341 Gene3D G3DSA:2.160.10.10 105 214 2.0E-17 T 26-04-2016 RGE_RS13265 d3aea8b714074b49dfa4ea9d5353b786 341 Gene3D G3DSA:2.160.10.10 215 306 2.0E-21 T 26-04-2016 RGE_RS13265 d3aea8b714074b49dfa4ea9d5353b786 341 PANTHER PTHR22572:SF117 102 298 4.7E-42 T 26-04-2016 RGE_RS13265 d3aea8b714074b49dfa4ea9d5353b786 341 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 7 332 9.0E-103 T 26-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 RGE_RS13265 d3aea8b714074b49dfa4ea9d5353b786 341 PANTHER PTHR22572 102 298 4.7E-42 T 26-04-2016 RGE_RS13265 d3aea8b714074b49dfa4ea9d5353b786 341 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 90 1.0E-21 T 26-04-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 RGE_RS13265 d3aea8b714074b49dfa4ea9d5353b786 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 225 259 1.7E-4 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS13265 d3aea8b714074b49dfa4ea9d5353b786 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 125 158 6.1E-4 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS13265 d3aea8b714074b49dfa4ea9d5353b786 341 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 8 329 34.065 T 26-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 RGE_RS16610 d0afb80d281b33a21adc96df45f2d592 363 Pfam PF02653 Branched-chain amino acid transport system / permease component 30 335 2.1E-49 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS16610 d0afb80d281b33a21adc96df45f2d592 363 PANTHER PTHR30482 1 349 6.4E-107 T 26-04-2016 RGE_RS16610 d0afb80d281b33a21adc96df45f2d592 363 PANTHER PTHR30482:SF10 1 349 6.4E-107 T 26-04-2016 RGE_RS05515 3282c679501e85ad4bd6083efba9b413 117 PANTHER PTHR40942:SF3 13 114 2.3E-20 T 26-04-2016 RGE_RS05515 3282c679501e85ad4bd6083efba9b413 117 SUPERFAMILY SSF46626 46 114 4.41E-11 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS05515 3282c679501e85ad4bd6083efba9b413 117 PANTHER PTHR40942 13 114 2.3E-20 T 26-04-2016 RGE_RS05515 3282c679501e85ad4bd6083efba9b413 117 PRINTS PR00607 Class IE cytochrome C signature 88 100 1.4E-5 T 26-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RGE_RS05515 3282c679501e85ad4bd6083efba9b413 117 PRINTS PR00607 Class IE cytochrome C signature 60 70 1.4E-5 T 26-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RGE_RS05515 3282c679501e85ad4bd6083efba9b413 117 PRINTS PR00607 Class IE cytochrome C signature 103 114 1.4E-5 T 26-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 RGE_RS05515 3282c679501e85ad4bd6083efba9b413 117 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 40 113 3.7E-11 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS05515 3282c679501e85ad4bd6083efba9b413 117 Gene3D G3DSA:1.10.760.10 45 114 4.1E-19 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 Pfam PF04898 Glutamate synthase central domain 483 769 1.3E-111 T 26-04-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 UniPathway: UPA00045 RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 PANTHER PTHR11938 22 942 0.0 T 26-04-2016 RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 PANTHER PTHR11938 963 1557 0.0 T 26-04-2016 RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 Pfam PF00310 Glutamine amidotransferases class-II 33 456 2.9E-187 T 26-04-2016 IPR017932 Glutamine amidotransferase type 2 domain RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 PANTHER PTHR11938:SF1 22 942 0.0 T 26-04-2016 RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 PANTHER PTHR11938:SF1 963 1557 0.0 T 26-04-2016 RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 Pfam PF01645 Conserved region in glutamate synthase 830 1226 7.3E-153 T 26-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 Gene3D G3DSA:2.160.20.60 1281 1563 4.0E-99 T 26-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 Gene3D G3DSA:3.20.20.70 473 819 3.2E-108 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 SUPERFAMILY SSF51395 478 1272 1.1E-263 T 26-04-2016 RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 SUPERFAMILY SSF56235 33 458 2.89E-155 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 Gene3D G3DSA:3.60.20.10 33 467 9.9E-190 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 Pfam PF01493 GXGXG motif 1308 1491 5.2E-76 T 26-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 Gene3D G3DSA:3.20.20.70 869 1265 3.9E-181 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS04055 6edfc4a51307ba18c3968a1f305d0e46 1578 SUPERFAMILY SSF69336 1276 1553 7.06E-90 T 26-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 36 667 1.3E-203 T 26-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 550 563 1.7E-30 T 26-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 413 428 1.7E-30 T 26-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 59 70 1.7E-30 T 26-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 589 598 1.7E-30 T 26-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 243 266 1.7E-30 T 26-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 Gene3D G3DSA:3.40.50.620 22 205 5.6E-127 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 Gene3D G3DSA:3.40.50.620 418 665 5.6E-127 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 PANTHER PTHR11946 287 912 0.0 T 26-04-2016 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 PANTHER PTHR11946 14 264 0.0 T 26-04-2016 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 Gene3D G3DSA:3.90.740.10 211 401 6.7E-47 T 26-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 Gene3D G3DSA:1.10.730.10 669 847 3.0E-40 T 26-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 Pfam PF08264 Anticodon-binding domain of tRNA 713 864 1.5E-26 T 26-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 66 77 - T 26-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 23 864 3.9E-253 T 26-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 10 938 20.035 T 26-04-2016 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 SUPERFAMILY SSF47323 680 937 1.68E-70 T 26-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 PANTHER PTHR11946:SF11 287 912 0.0 T 26-04-2016 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 PANTHER PTHR11946:SF11 14 264 0.0 T 26-04-2016 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 SUPERFAMILY SSF52374 415 676 1.85E-127 T 26-04-2016 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 SUPERFAMILY SSF52374 12 207 1.85E-127 T 26-04-2016 RGE_RS06880 926b9f35ea5d85c1580580b128d7e933 947 SUPERFAMILY SSF50677 209 415 1.44E-45 T 26-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RGE_RS14005 21aad034ffd89e53a8559848edfd6314 71 PRINTS PR00673 Light harvesting protein A chain signature 12 31 2.5E-6 T 26-04-2016 IPR018332 Antenna complex, alpha subunit RGE_RS14005 21aad034ffd89e53a8559848edfd6314 71 PRINTS PR00673 Light harvesting protein A chain signature 5 12 2.5E-6 T 26-04-2016 IPR018332 Antenna complex, alpha subunit RGE_RS14005 21aad034ffd89e53a8559848edfd6314 71 PRINTS PR00673 Light harvesting protein A chain signature 31 42 2.5E-6 T 26-04-2016 IPR018332 Antenna complex, alpha subunit RGE_RS14005 21aad034ffd89e53a8559848edfd6314 71 Pfam PF00556 Antenna complex alpha/beta subunit 4 41 4.7E-9 T 26-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS14005 21aad034ffd89e53a8559848edfd6314 71 Gene3D G3DSA:4.10.220.20 1 52 3.6E-26 T 26-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS14005 21aad034ffd89e53a8559848edfd6314 71 SUPERFAMILY SSF56918 1 52 8.89E-21 T 26-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS03785 d43e88407ea8136f90f76081e97b437c 436 Gene3D G3DSA:3.40.50.2300 32 230 2.8E-20 T 26-04-2016 RGE_RS03785 d43e88407ea8136f90f76081e97b437c 436 PANTHER PTHR30483 1 428 9.0E-18 T 26-04-2016 RGE_RS03785 d43e88407ea8136f90f76081e97b437c 436 Pfam PF13458 Periplasmic binding protein 26 393 2.2E-82 T 26-04-2016 IPR028081 Leucine-binding protein domain RGE_RS03785 d43e88407ea8136f90f76081e97b437c 436 SUPERFAMILY SSF53822 30 396 2.99E-48 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS22855 3457eaf44ea07ba2e1567f443319b787 156 PANTHER PTHR22884 7 134 9.9E-25 T 26-04-2016 RGE_RS22855 3457eaf44ea07ba2e1567f443319b787 156 Gene3D G3DSA:2.170.270.10 6 143 2.2E-34 T 26-04-2016 RGE_RS22855 3457eaf44ea07ba2e1567f443319b787 156 PANTHER PTHR22884:SF342 7 134 9.9E-25 T 26-04-2016 RGE_RS22855 3457eaf44ea07ba2e1567f443319b787 156 SUPERFAMILY SSF82199 6 141 1.96E-36 T 26-04-2016 RGE_RS22855 3457eaf44ea07ba2e1567f443319b787 156 SMART SM00317 6 125 2.9E-24 T 26-04-2016 IPR001214 SET domain GO:0005515 RGE_RS22855 3457eaf44ea07ba2e1567f443319b787 156 Pfam PF00856 SET domain 17 118 2.6E-14 T 26-04-2016 IPR001214 SET domain GO:0005515 RGE_RS04550 e736d9a282cf5a8d0a216a33a855b6c3 218 SUPERFAMILY SSF52172 1 176 1.83E-35 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS04550 e736d9a282cf5a8d0a216a33a855b6c3 218 SMART SM00862 145 216 4.8E-27 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS04550 e736d9a282cf5a8d0a216a33a855b6c3 218 PANTHER PTHR26402 1 216 1.7E-101 T 26-04-2016 RGE_RS04550 e736d9a282cf5a8d0a216a33a855b6c3 218 Gene3D G3DSA:3.40.50.2300 1 123 1.9E-34 T 26-04-2016 RGE_RS04550 e736d9a282cf5a8d0a216a33a855b6c3 218 Pfam PF00072 Response regulator receiver domain 3 112 1.2E-20 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04550 e736d9a282cf5a8d0a216a33a855b6c3 218 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.3E-23 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS04550 e736d9a282cf5a8d0a216a33a855b6c3 218 Gene3D G3DSA:1.10.10.10 124 216 6.6E-30 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04550 e736d9a282cf5a8d0a216a33a855b6c3 218 SMART SM00448 1 112 1.2E-33 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04550 e736d9a282cf5a8d0a216a33a855b6c3 218 PANTHER PTHR26402:SF279 1 216 1.7E-101 T 26-04-2016 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 PANTHER PTHR24078 1 354 3.3E-152 T 26-04-2016 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 Gene3D G3DSA:2.60.260.20 262 338 2.4E-21 T 26-04-2016 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 SUPERFAMILY SSF49493 264 349 4.45E-22 T 26-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 Pfam PF00684 DnaJ central domain 152 212 5.0E-15 T 26-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 355 1.2E-136 T 26-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 Gene3D G3DSA:2.60.260.20 121 141 2.5E-22 T 26-04-2016 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 Gene3D G3DSA:2.60.260.20 204 261 2.5E-22 T 26-04-2016 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 SMART SM00271 4 64 1.5E-31 T 26-04-2016 IPR001623 DnaJ domain RGE_RS13185 f34415f76808d10def5819ee571e996f 379 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 377 41.464 T 26-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 ProSitePatterns PS00636 Nt-dnaJ domain signature. 49 68 - T 26-04-2016 IPR018253 DnaJ domain, conserved site RGE_RS13185 f34415f76808d10def5819ee571e996f 379 Pfam PF01556 DnaJ C terminal domain 126 338 4.7E-42 T 26-04-2016 IPR002939 Chaperone DnaJ, C-terminal RGE_RS13185 f34415f76808d10def5819ee571e996f 379 Pfam PF00226 DnaJ domain 5 69 1.7E-28 T 26-04-2016 IPR001623 DnaJ domain RGE_RS13185 f34415f76808d10def5819ee571e996f 379 SUPERFAMILY SSF46565 1 112 5.76E-37 T 26-04-2016 IPR001623 DnaJ domain RGE_RS13185 f34415f76808d10def5819ee571e996f 379 PANTHER PTHR24078:SF190 1 354 3.3E-152 T 26-04-2016 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 PRINTS PR00625 DnaJ domain signature 25 40 9.8E-34 T 26-04-2016 IPR001623 DnaJ domain RGE_RS13185 f34415f76808d10def5819ee571e996f 379 PRINTS PR00625 DnaJ domain signature 7 25 9.8E-34 T 26-04-2016 IPR001623 DnaJ domain RGE_RS13185 f34415f76808d10def5819ee571e996f 379 PRINTS PR00625 DnaJ domain signature 64 83 9.8E-34 T 26-04-2016 IPR001623 DnaJ domain RGE_RS13185 f34415f76808d10def5819ee571e996f 379 PRINTS PR00625 DnaJ domain signature 44 64 9.8E-34 T 26-04-2016 IPR001623 DnaJ domain RGE_RS13185 f34415f76808d10def5819ee571e996f 379 Gene3D G3DSA:2.10.230.10 142 203 7.9E-24 T 26-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 Gene3D G3DSA:1.10.287.110 1 93 1.8E-38 T 26-04-2016 IPR001623 DnaJ domain RGE_RS13185 f34415f76808d10def5819ee571e996f 379 SUPERFAMILY SSF57938 139 215 8.24E-22 T 26-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 SUPERFAMILY SSF49493 219 262 2.88E-19 T 26-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RGE_RS13185 f34415f76808d10def5819ee571e996f 379 SUPERFAMILY SSF49493 120 143 2.88E-19 T 26-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RGE_RS19440 68f4b1c82c28a93568be6689f587717e 347 Gene3D G3DSA:3.40.190.10 48 121 5.7E-4 T 26-04-2016 RGE_RS19440 68f4b1c82c28a93568be6689f587717e 347 SUPERFAMILY SSF53850 33 268 1.15E-32 T 26-04-2016 RGE_RS19440 68f4b1c82c28a93568be6689f587717e 347 Pfam PF09084 NMT1/THI5 like 46 259 9.2E-41 T 26-04-2016 IPR015168 SsuA/THI5-like RGE_RS19440 68f4b1c82c28a93568be6689f587717e 347 Gene3D G3DSA:3.40.190.10 122 244 2.9E-13 T 26-04-2016 RGE_RS19440 68f4b1c82c28a93568be6689f587717e 347 PANTHER PTHR31528 1 346 3.1E-62 T 26-04-2016 IPR027939 NMT1/THI5 family GO:0009228 UniPathway: UPA00060 RGE_RS21640 f62a61c86272cb05fa1c7cd85af3bc74 209 SUPERFAMILY SSF49777 1 204 8.11E-37 T 26-04-2016 IPR008914 Phosphatidylethanolamine-binding protein RGE_RS21640 f62a61c86272cb05fa1c7cd85af3bc74 209 PANTHER PTHR30289 1 208 3.3E-23 T 26-04-2016 RGE_RS21640 f62a61c86272cb05fa1c7cd85af3bc74 209 Gene3D G3DSA:3.90.280.10 1 206 4.7E-52 T 26-04-2016 IPR008914 Phosphatidylethanolamine-binding protein RGE_RS21640 f62a61c86272cb05fa1c7cd85af3bc74 209 Pfam PF01161 Phosphatidylethanolamine-binding protein 16 201 2.3E-33 T 26-04-2016 IPR008914 Phosphatidylethanolamine-binding protein RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 PANTHER PTHR22912 5 338 1.2E-83 T 26-04-2016 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 Gene3D G3DSA:3.50.50.60 140 262 8.9E-16 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 72 303 1.9E-21 T 26-04-2016 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 20 39 1.6E-12 T 26-04-2016 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 284 306 1.6E-12 T 26-04-2016 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 167 185 1.6E-12 T 26-04-2016 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 273 1.6E-12 T 26-04-2016 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 PANTHER PTHR22912:SF158 5 338 1.2E-83 T 26-04-2016 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 SUPERFAMILY SSF51905 19 330 6.74E-37 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 124 132 2.7E-13 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 76 86 2.7E-13 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 163 187 2.7E-13 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 19 41 2.7E-13 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 Gene3D G3DSA:3.50.50.60 265 338 3.6E-42 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 Gene3D G3DSA:3.50.50.60 17 138 3.6E-42 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11405 93ac1af447ecdf33b6b9bc45174f5df9 362 Hamap MF_01685 Ferredoxin--NADP reductase. 17 347 39.365 T 26-04-2016 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101|MetaCyc: PWY-7230 RGE_RS15420 8f9aad21d39574f1e3bf8291c2f6c421 166 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 39 56 - T 26-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RGE_RS15420 8f9aad21d39574f1e3bf8291c2f6c421 166 PANTHER PTHR11071 6 163 4.6E-65 T 26-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RGE_RS15420 8f9aad21d39574f1e3bf8291c2f6c421 166 Gene3D G3DSA:2.40.100.10 3 164 2.6E-54 T 26-04-2016 IPR029000 Cyclophilin-like domain RGE_RS15420 8f9aad21d39574f1e3bf8291c2f6c421 166 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 5 163 8.7E-49 T 26-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RGE_RS15420 8f9aad21d39574f1e3bf8291c2f6c421 166 SUPERFAMILY SSF50891 4 163 8.04E-57 T 26-04-2016 IPR029000 Cyclophilin-like domain RGE_RS15420 8f9aad21d39574f1e3bf8291c2f6c421 166 PANTHER PTHR11071:SF192 6 163 4.6E-65 T 26-04-2016 RGE_RS15420 8f9aad21d39574f1e3bf8291c2f6c421 166 PIRSF PIRSF001467 1 165 1.9E-28 T 26-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RGE_RS15420 8f9aad21d39574f1e3bf8291c2f6c421 166 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 135 2.1E-10 T 26-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RGE_RS15420 8f9aad21d39574f1e3bf8291c2f6c421 166 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 56 2.1E-10 T 26-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RGE_RS15420 8f9aad21d39574f1e3bf8291c2f6c421 166 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 18 33 2.1E-10 T 26-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RGE_RS22675 2f71c28057b59141d784e2d53379d46e 261 PANTHER PTHR12553 1 206 3.4E-14 T 26-04-2016 RGE_RS22675 2f71c28057b59141d784e2d53379d46e 261 Pfam PF12706 Beta-lactamase superfamily domain 27 195 1.9E-13 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS22675 2f71c28057b59141d784e2d53379d46e 261 Gene3D G3DSA:3.60.15.10 1 241 1.1E-27 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS22675 2f71c28057b59141d784e2d53379d46e 261 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 49 67 1.2E-9 T 26-04-2016 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 RGE_RS22675 2f71c28057b59141d784e2d53379d46e 261 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 85 106 1.2E-9 T 26-04-2016 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 RGE_RS22675 2f71c28057b59141d784e2d53379d46e 261 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 200 213 1.2E-9 T 26-04-2016 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 RGE_RS22675 2f71c28057b59141d784e2d53379d46e 261 SMART SM00849 17 208 2.5E-6 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS22675 2f71c28057b59141d784e2d53379d46e 261 SUPERFAMILY SSF56281 1 236 6.55E-35 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS15500 424ac3e50ac588313192a0f90bcbb451 462 PANTHER PTHR13932:SF6 7 456 2.4E-203 T 26-04-2016 RGE_RS15500 424ac3e50ac588313192a0f90bcbb451 462 PIRSF PIRSF000167 3 459 8.2E-161 T 26-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 RGE_RS15500 424ac3e50ac588313192a0f90bcbb451 462 SUPERFAMILY SSF102114 3 448 3.01E-127 T 26-04-2016 RGE_RS15500 424ac3e50ac588313192a0f90bcbb451 462 Pfam PF06969 HemN C-terminal domain 368 435 4.0E-9 T 26-04-2016 IPR010723 HemN, C-terminal RGE_RS15500 424ac3e50ac588313192a0f90bcbb451 462 SMART SM00729 56 274 9.3E-49 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS15500 424ac3e50ac588313192a0f90bcbb451 462 Gene3D G3DSA:3.80.30.20 56 251 6.5E-30 T 26-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RGE_RS15500 424ac3e50ac588313192a0f90bcbb451 462 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 8 462 2.4E-166 T 26-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 RGE_RS15500 424ac3e50ac588313192a0f90bcbb451 462 Pfam PF04055 Radical SAM superfamily 61 232 3.4E-19 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS15500 424ac3e50ac588313192a0f90bcbb451 462 PANTHER PTHR13932 7 456 2.4E-203 T 26-04-2016 RGE_RS01425 5c1d6a84f9a8b357e5619a767d4357e1 220 SUPERFAMILY SSF51366 1 217 1.88E-74 T 26-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RGE_RS01425 5c1d6a84f9a8b357e5619a767d4357e1 220 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 26-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RGE_RS01425 5c1d6a84f9a8b357e5619a767d4357e1 220 Gene3D G3DSA:3.20.20.70 2 218 4.7E-95 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS01425 5c1d6a84f9a8b357e5619a767d4357e1 220 PANTHER PTHR11749 2 220 1.8E-121 T 26-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RGE_RS01425 5c1d6a84f9a8b357e5619a767d4357e1 220 PANTHER PTHR11749:SF7 2 220 1.8E-121 T 26-04-2016 RGE_RS01425 5c1d6a84f9a8b357e5619a767d4357e1 220 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 135 157 - T 26-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RGE_RS01425 5c1d6a84f9a8b357e5619a767d4357e1 220 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 215 5.5E-96 T 26-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RGE_RS01425 5c1d6a84f9a8b357e5619a767d4357e1 220 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 202 4.2E-89 T 26-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RGE_RS01425 5c1d6a84f9a8b357e5619a767d4357e1 220 PIRSF PIRSF001461 1 220 3.1E-100 T 26-04-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RGE_RS15585 5b0a451af66fe4be5862ba4e7c3ef521 247 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 2 240 6.1E-87 T 26-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RGE_RS15585 5b0a451af66fe4be5862ba4e7c3ef521 247 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 247 40.147 T 26-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RGE_RS15585 5b0a451af66fe4be5862ba4e7c3ef521 247 SUPERFAMILY SSF53448 3 246 1.43E-57 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS15585 5b0a451af66fe4be5862ba4e7c3ef521 247 Gene3D G3DSA:3.90.550.10 3 246 7.6E-76 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS15585 5b0a451af66fe4be5862ba4e7c3ef521 247 PANTHER PTHR21485:SF4 2 246 2.7E-98 T 26-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RGE_RS15585 5b0a451af66fe4be5862ba4e7c3ef521 247 Pfam PF02348 Cytidylyltransferase 5 220 5.7E-48 T 26-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RGE_RS15585 5b0a451af66fe4be5862ba4e7c3ef521 247 PANTHER PTHR21485 2 246 2.7E-98 T 26-04-2016 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 4 293 45.967 T 26-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 PIRSF PIRSF036480 4 294 4.6E-105 T 26-04-2016 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 SUPERFAMILY SSF53328 95 293 3.4E-60 T 26-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 Gene3D G3DSA:3.30.70.260 3 89 8.9E-26 T 26-04-2016 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 SUPERFAMILY SSF55021 4 94 1.87E-14 T 26-04-2016 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 Gene3D G3DSA:3.40.50.170 95 293 1.0E-54 T 26-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 Pfam PF01842 ACT domain 8 60 1.7E-6 T 26-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 PANTHER PTHR10520 4 287 2.1E-141 T 26-04-2016 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 117 144 7.2E-51 T 26-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 267 292 7.2E-51 T 26-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 245 267 7.2E-51 T 26-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 9 35 7.2E-51 T 26-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 95 117 7.2E-51 T 26-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 Pfam PF00551 Formyl transferase 95 275 1.3E-36 T 26-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 8 293 1.1E-98 T 26-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RGE_RS00770 0a5922e840a8498a042f32ea36e35558 294 PANTHER PTHR10520:SF7 4 287 2.1E-141 T 26-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RGE_RS03900 3d40842a0c0e87e425d9256b613b9523 731 PANTHER PTHR30332 11 726 4.4E-157 T 26-04-2016 RGE_RS03900 3d40842a0c0e87e425d9256b613b9523 731 PANTHER PTHR30332:SF8 11 726 4.4E-157 T 26-04-2016 RGE_RS03900 3d40842a0c0e87e425d9256b613b9523 731 Pfam PF00263 Bacterial type II and III secretion system protein 487 654 1.4E-50 T 26-04-2016 IPR004846 Type II/III secretion system GO:0009306 RGE_RS03900 3d40842a0c0e87e425d9256b613b9523 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 642 656 1.1E-32 T 26-04-2016 IPR001775 GspD/PilQ family RGE_RS03900 3d40842a0c0e87e425d9256b613b9523 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 619 637 1.1E-32 T 26-04-2016 IPR001775 GspD/PilQ family RGE_RS03900 3d40842a0c0e87e425d9256b613b9523 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 518 528 1.1E-32 T 26-04-2016 IPR001775 GspD/PilQ family RGE_RS03900 3d40842a0c0e87e425d9256b613b9523 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 483 507 1.1E-32 T 26-04-2016 IPR001775 GspD/PilQ family RGE_RS03900 3d40842a0c0e87e425d9256b613b9523 731 PRINTS PR00811 Bacterial general secretion pathway protein D signature 396 406 1.1E-32 T 26-04-2016 IPR001775 GspD/PilQ family RGE_RS03900 3d40842a0c0e87e425d9256b613b9523 731 Pfam PF03958 Bacterial type II/III secretion system short domain 133 191 1.2E-7 T 26-04-2016 IPR005644 NolW-like RGE_RS03900 3d40842a0c0e87e425d9256b613b9523 731 Pfam PF03958 Bacterial type II/III secretion system short domain 197 270 1.9E-13 T 26-04-2016 IPR005644 NolW-like RGE_RS03900 3d40842a0c0e87e425d9256b613b9523 731 Pfam PF03958 Bacterial type II/III secretion system short domain 280 396 2.7E-19 T 26-04-2016 IPR005644 NolW-like RGE_RS03900 3d40842a0c0e87e425d9256b613b9523 731 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 37 663 1.4E-178 T 26-04-2016 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 SUPERFAMILY SSF53686 2 470 3.17E-155 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 Gene3D G3DSA:3.40.50.1100 204 439 2.4E-89 T 26-04-2016 RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 93 332 2.5E-11 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 TIGRFAM TIGR00260 thrC: threonine synthase 81 429 2.8E-71 T 26-04-2016 IPR004450 Threonine synthase-like RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 Pfam PF14821 Threonine synthase N terminus 2 79 5.0E-30 T 26-04-2016 IPR029144 Threonine synthase, N-terminal RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 PANTHER PTHR10314:SF1 53 335 2.4E-131 T 26-04-2016 RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 PANTHER PTHR10314:SF1 25 36 2.4E-131 T 26-04-2016 RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 Gene3D G3DSA:3.90.1380.10 2 82 6.8E-31 T 26-04-2016 IPR029144 Threonine synthase, N-terminal RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 Gene3D G3DSA:3.40.50.1100 112 203 1.2E-7 T 26-04-2016 RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 PANTHER PTHR10314 368 470 2.4E-131 T 26-04-2016 RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 PANTHER PTHR10314 53 335 2.4E-131 T 26-04-2016 RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 PANTHER PTHR10314 25 36 2.4E-131 T 26-04-2016 RGE_RS15860 d9e30b22b70402c2f020202d30ea6b90 472 PANTHER PTHR10314:SF1 368 470 2.4E-131 T 26-04-2016 RGE_RS03075 71b857d2a73069c3dec1ecfc1bf00318 285 PANTHER PTHR11948:SF1 1 270 1.4E-43 T 26-04-2016 RGE_RS03075 71b857d2a73069c3dec1ecfc1bf00318 285 PANTHER PTHR11948 1 270 1.4E-43 T 26-04-2016 RGE_RS03075 71b857d2a73069c3dec1ecfc1bf00318 285 SUPERFAMILY SSF54675 4 106 1.84E-17 T 26-04-2016 RGE_RS03075 71b857d2a73069c3dec1ecfc1bf00318 285 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 17 105 1.3E-15 T 26-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 RGE_RS03075 71b857d2a73069c3dec1ecfc1bf00318 285 TIGRFAM TIGR01334 modD: modD protein 7 276 1.5E-77 T 26-04-2016 IPR006242 Putative pyrophosphorylase ModD GO:0016763 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.- RGE_RS03075 71b857d2a73069c3dec1ecfc1bf00318 285 Gene3D G3DSA:3.90.1170.20 7 131 5.5E-24 T 26-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 RGE_RS03075 71b857d2a73069c3dec1ecfc1bf00318 285 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 107 275 4.5E-30 T 26-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RGE_RS03075 71b857d2a73069c3dec1ecfc1bf00318 285 PIRSF PIRSF006250 4 279 2.9E-57 T 26-04-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD RGE_RS03075 71b857d2a73069c3dec1ecfc1bf00318 285 SUPERFAMILY SSF51690 107 276 1.88E-40 T 26-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RGE_RS03075 71b857d2a73069c3dec1ecfc1bf00318 285 Gene3D G3DSA:3.20.20.70 132 266 2.0E-36 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 392 7.3E-130 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 Pfam PF00108 Thiolase, N-terminal domain 5 262 2.8E-79 T 26-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 PANTHER PTHR18919 1 394 1.5E-168 T 26-04-2016 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 Gene3D G3DSA:3.40.47.10 278 393 7.6E-61 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 Gene3D G3DSA:3.40.47.10 147 194 7.6E-61 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 26-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 SUPERFAMILY SSF53901 272 393 1.42E-41 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 Gene3D G3DSA:3.40.47.10 195 276 3.4E-60 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 Gene3D G3DSA:3.40.47.10 4 125 3.4E-60 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 Pfam PF02803 Thiolase, C-terminal domain 272 393 1.2E-44 T 26-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 ProSitePatterns PS00099 Thiolases active site. 375 388 - T 26-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 PANTHER PTHR18919:SF95 1 394 1.5E-168 T 26-04-2016 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 SUPERFAMILY SSF53901 4 268 6.51E-75 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 PIRSF PIRSF000429 1 394 6.3E-116 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS00695 1a32be7157351e9ba2629e88e61c4284 394 ProSitePatterns PS00737 Thiolases signature 2. 340 356 - T 26-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RGE_RS03540 01134e774307011063e7c475d643e8f2 213 PANTHER PTHR36438 48 211 1.5E-13 T 26-04-2016 RGE_RS03540 01134e774307011063e7c475d643e8f2 213 Gene3D G3DSA:1.20.120.520 56 196 3.0E-16 T 26-04-2016 RGE_RS03540 01134e774307011063e7c475d643e8f2 213 Pfam PF01814 Hemerythrin HHE cation binding domain 68 196 3.7E-15 T 26-04-2016 IPR012312 Haemerythrin-like RGE_RS03540 01134e774307011063e7c475d643e8f2 213 PANTHER PTHR36438:SF1 48 211 1.5E-13 T 26-04-2016 RGE_RS21270 bb00ae07d8af7267c37121c929d5c4fe 340 Pfam PF00005 ABC transporter 24 164 2.2E-30 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS21270 bb00ae07d8af7267c37121c929d5c4fe 340 PANTHER PTHR24220:SF481 8 244 1.3E-125 T 26-04-2016 RGE_RS21270 bb00ae07d8af7267c37121c929d5c4fe 340 Gene3D G3DSA:3.40.50.300 4 237 2.1E-75 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21270 bb00ae07d8af7267c37121c929d5c4fe 340 Pfam PF08402 TOBE domain 250 336 8.3E-7 T 26-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RGE_RS21270 bb00ae07d8af7267c37121c929d5c4fe 340 SMART SM00382 31 264 1.7E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21270 bb00ae07d8af7267c37121c929d5c4fe 340 SUPERFAMILY SSF52540 7 243 3.55E-83 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21270 bb00ae07d8af7267c37121c929d5c4fe 340 SUPERFAMILY SSF50331 239 336 6.23E-5 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS21270 bb00ae07d8af7267c37121c929d5c4fe 340 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS21270 bb00ae07d8af7267c37121c929d5c4fe 340 PANTHER PTHR24220 8 244 1.3E-125 T 26-04-2016 RGE_RS00460 e05be9f683b8bebcae752a8661e5e11f 420 Gene3D G3DSA:3.20.20.70 52 184 1.5E-10 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS00460 e05be9f683b8bebcae752a8661e5e11f 420 SMART SM00729 56 297 0.0041 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS00460 e05be9f683b8bebcae752a8661e5e11f 420 SUPERFAMILY SSF102114 43 196 3.27E-15 T 26-04-2016 RGE_RS00460 e05be9f683b8bebcae752a8661e5e11f 420 PANTHER PTHR21180:SF9 134 389 9.0E-107 T 26-04-2016 IPR023874 DNA modification/repair radical SAM protein, putative RGE_RS00460 e05be9f683b8bebcae752a8661e5e11f 420 PANTHER PTHR21180 134 389 9.0E-107 T 26-04-2016 RGE_RS00460 e05be9f683b8bebcae752a8661e5e11f 420 SUPERFAMILY SSF47781 320 378 3.04E-8 T 26-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RGE_RS00460 e05be9f683b8bebcae752a8661e5e11f 420 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 3 395 7.2E-160 T 26-04-2016 IPR023874 DNA modification/repair radical SAM protein, putative RGE_RS00505 d39271fb038be04e19aeeb777a26e78d 356 PANTHER PTHR38457 9 356 5.8E-49 T 26-04-2016 RGE_RS00505 d39271fb038be04e19aeeb777a26e78d 356 PANTHER PTHR38457:SF1 9 356 5.8E-49 T 26-04-2016 RGE_RS00505 d39271fb038be04e19aeeb777a26e78d 356 PIRSF PIRSF038991 8 350 1.7E-76 T 26-04-2016 IPR007820 AbrB family GO:0010468|GO:0016021 RGE_RS00505 d39271fb038be04e19aeeb777a26e78d 356 Pfam PF05145 Putative ammonia monooxygenase 40 346 1.9E-77 T 26-04-2016 IPR007820 AbrB family GO:0010468|GO:0016021 RGE_RS00505 d39271fb038be04e19aeeb777a26e78d 356 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 18 171 4.7E-29 T 26-04-2016 IPR017516 AbrB duplication RGE_RS00505 d39271fb038be04e19aeeb777a26e78d 356 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 192 346 4.5E-33 T 26-04-2016 IPR017516 AbrB duplication RGE_RS04715 34b398ce3f6250b4d487370ddec427cf 1079 SUPERFAMILY SSF52540 247 453 4.55E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04715 34b398ce3f6250b4d487370ddec427cf 1079 Pfam PF03704 Bacterial transcriptional activator domain 134 230 8.3E-10 T 26-04-2016 IPR005158 Bacterial transcriptional activator domain RGE_RS04715 34b398ce3f6250b4d487370ddec427cf 1079 PANTHER PTHR16305 320 855 2.9E-15 T 26-04-2016 RGE_RS04715 34b398ce3f6250b4d487370ddec427cf 1079 PANTHER PTHR16305 9 40 2.9E-15 T 26-04-2016 RGE_RS04715 34b398ce3f6250b4d487370ddec427cf 1079 Gene3D G3DSA:1.25.40.10 666 977 8.7E-13 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS04715 34b398ce3f6250b4d487370ddec427cf 1079 SUPERFAMILY SSF48452 712 900 1.52E-12 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS04715 34b398ce3f6250b4d487370ddec427cf 1079 SMART SM01043 85 233 7.4E-13 T 26-04-2016 IPR005158 Bacterial transcriptional activator domain RGE_RS04715 34b398ce3f6250b4d487370ddec427cf 1079 SUPERFAMILY SSF48452 128 253 1.96E-12 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS04715 34b398ce3f6250b4d487370ddec427cf 1079 Gene3D G3DSA:3.40.50.300 259 378 4.4E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04715 34b398ce3f6250b4d487370ddec427cf 1079 Pfam PF13191 AAA ATPase domain 255 380 3.9E-10 T 26-04-2016 RGE_RS07270 67843df37ff0e18d7aa8cb14a5f6798c 147 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 3 131 2.0E-31 T 26-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RGE_RS07270 67843df37ff0e18d7aa8cb14a5f6798c 147 PANTHER PTHR33540:SF2 29 137 4.2E-27 T 26-04-2016 RGE_RS07270 67843df37ff0e18d7aa8cb14a5f6798c 147 SUPERFAMILY SSF52540 29 121 5.53E-16 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07270 67843df37ff0e18d7aa8cb14a5f6798c 147 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 5 130 1.5E-31 T 26-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RGE_RS07270 67843df37ff0e18d7aa8cb14a5f6798c 147 PANTHER PTHR33540 29 137 4.2E-27 T 26-04-2016 RGE_RS07270 67843df37ff0e18d7aa8cb14a5f6798c 147 Gene3D G3DSA:3.40.50.300 3 145 2.3E-38 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08320 d4e5d07a633697501d73febdcfb8b379 288 PANTHER PTHR30244:SF1 3 287 4.9E-106 T 26-04-2016 RGE_RS08320 d4e5d07a633697501d73febdcfb8b379 288 Pfam PF00700 Bacterial flagellin C-terminal helical region 201 286 1.4E-24 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS08320 d4e5d07a633697501d73febdcfb8b379 288 PANTHER PTHR30244 3 287 4.9E-106 T 26-04-2016 RGE_RS08320 d4e5d07a633697501d73febdcfb8b379 288 SUPERFAMILY SSF64518 1 287 1.96E-87 T 26-04-2016 RGE_RS08320 d4e5d07a633697501d73febdcfb8b379 288 PRINTS PR00207 Flagellin signature 76 95 4.1E-22 T 26-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RGE_RS08320 d4e5d07a633697501d73febdcfb8b379 288 PRINTS PR00207 Flagellin signature 111 134 4.1E-22 T 26-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RGE_RS08320 d4e5d07a633697501d73febdcfb8b379 288 PRINTS PR00207 Flagellin signature 37 54 4.1E-22 T 26-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RGE_RS08320 d4e5d07a633697501d73febdcfb8b379 288 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 140 5.7E-41 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS08320 d4e5d07a633697501d73febdcfb8b379 288 Gene3D G3DSA:1.20.1330.10 54 243 1.4E-48 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 SMART SM00086 80 121 0.0016 T 26-04-2016 IPR001610 PAC motif RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 PANTHER PTHR32089:SF63 197 516 1.8E-109 T 26-04-2016 RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 SUPERFAMILY SSF55785 19 114 5.93E-28 T 26-04-2016 IPR000014 PAS domain RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 SMART SM00283 266 513 5.7E-73 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 2.7E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 2.7E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 2.7E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 2.7E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 Pfam PF08447 PAS fold 31 114 6.5E-14 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 512 2.3E-52 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 Gene3D G3DSA:1.10.287.950 280 485 1.4E-53 T 26-04-2016 RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 21 114 1.8E-12 T 26-04-2016 IPR000014 PAS domain RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 Gene3D G3DSA:3.30.450.20 19 114 5.2E-25 T 26-04-2016 RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 PANTHER PTHR32089 197 516 1.8E-109 T 26-04-2016 RGE_RS18320 257c2de6b2381c9c2192b792c8b6cc98 516 SUPERFAMILY SSF58104 233 514 2.88E-64 T 26-04-2016 RGE_RS09895 b460abb7bdb512d7c41718a8f9c7d9f7 185 PANTHER PTHR23026:SF107 1 184 1.8E-33 T 26-04-2016 RGE_RS09895 b460abb7bdb512d7c41718a8f9c7d9f7 185 PIRSF PIRSF000232 1 185 1.5E-48 T 26-04-2016 IPR026021 Putative NAD(P)H nitroreductase YdjA-like KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- RGE_RS09895 b460abb7bdb512d7c41718a8f9c7d9f7 185 Pfam PF00881 Nitroreductase family 9 163 2.0E-17 T 26-04-2016 IPR029479 Nitroreductase RGE_RS09895 b460abb7bdb512d7c41718a8f9c7d9f7 185 Gene3D G3DSA:3.40.109.10 1 176 7.9E-27 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS09895 b460abb7bdb512d7c41718a8f9c7d9f7 185 PANTHER PTHR23026 1 184 1.8E-33 T 26-04-2016 RGE_RS09895 b460abb7bdb512d7c41718a8f9c7d9f7 185 SUPERFAMILY SSF55469 1 171 8.51E-26 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS09765 0d1b22714aad221a3e9135fdfc2e1967 470 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 438 2.2E-161 T 26-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 RGE_RS09765 0d1b22714aad221a3e9135fdfc2e1967 470 PIRSF PIRSF006446 2 462 4.4E-211 T 26-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 RGE_RS09765 0d1b22714aad221a3e9135fdfc2e1967 470 PANTHER PTHR30365:SF8 1 459 9.3E-263 T 26-04-2016 RGE_RS09765 0d1b22714aad221a3e9135fdfc2e1967 470 PANTHER PTHR30365 1 459 9.3E-263 T 26-04-2016 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 2.9E-143 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 PANTHER PTHR18919 1 391 3.2E-221 T 26-04-2016 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 26-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 Pfam PF00108 Thiolase, N-terminal domain 4 260 1.2E-100 T 26-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 SUPERFAMILY SSF53901 269 390 4.27E-46 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 SUPERFAMILY SSF53901 3 268 9.02E-84 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 26-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 Gene3D G3DSA:3.40.47.10 193 274 1.6E-76 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 Gene3D G3DSA:3.40.47.10 3 123 1.6E-76 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 Pfam PF02803 Thiolase, C-terminal domain 269 390 1.3E-50 T 26-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 PIRSF PIRSF000429 1 391 4.1E-127 T 26-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 Gene3D G3DSA:3.40.47.10 275 390 6.5E-72 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 Gene3D G3DSA:3.40.47.10 141 192 6.5E-72 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 PANTHER PTHR18919:SF95 1 391 3.2E-221 T 26-04-2016 RGE_RS04865 d244620301e15478aa52ee52cbffc70c 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 26-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RGE_RS22525 37cc560e343dd4bf58c0a9e8371a9120 318 Pfam PF03466 LysR substrate binding domain 89 295 7.9E-42 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS22525 37cc560e343dd4bf58c0a9e8371a9120 318 Gene3D G3DSA:3.40.190.10 92 176 3.0E-21 T 26-04-2016 RGE_RS22525 37cc560e343dd4bf58c0a9e8371a9120 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 5.9E-15 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS22525 37cc560e343dd4bf58c0a9e8371a9120 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 6.8E-9 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS22525 37cc560e343dd4bf58c0a9e8371a9120 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 6.8E-9 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS22525 37cc560e343dd4bf58c0a9e8371a9120 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 6.8E-9 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS22525 37cc560e343dd4bf58c0a9e8371a9120 318 PANTHER PTHR30126 1 313 4.6E-136 T 26-04-2016 RGE_RS22525 37cc560e343dd4bf58c0a9e8371a9120 318 Gene3D G3DSA:1.10.10.10 2 82 1.2E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22525 37cc560e343dd4bf58c0a9e8371a9120 318 Gene3D G3DSA:3.40.190.10 177 265 2.1E-24 T 26-04-2016 RGE_RS22525 37cc560e343dd4bf58c0a9e8371a9120 318 PANTHER PTHR30126:SF6 1 313 4.6E-136 T 26-04-2016 RGE_RS22525 37cc560e343dd4bf58c0a9e8371a9120 318 SUPERFAMILY SSF53850 92 304 1.63E-38 T 26-04-2016 RGE_RS22525 37cc560e343dd4bf58c0a9e8371a9120 318 SUPERFAMILY SSF46785 2 87 7.79E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS21735 ba2d7290c928ba000583680519279bfe 335 Gene3D G3DSA:1.10.8.80 219 288 4.7E-21 T 26-04-2016 RGE_RS21735 ba2d7290c928ba000583680519279bfe 335 PANTHER PTHR32039 4 306 7.8E-98 T 26-04-2016 RGE_RS21735 ba2d7290c928ba000583680519279bfe 335 SMART SM00382 33 176 9.3E-10 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21735 ba2d7290c928ba000583680519279bfe 335 Gene3D G3DSA:3.40.50.300 8 171 2.6E-49 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21735 ba2d7290c928ba000583680519279bfe 335 SUPERFAMILY SSF52540 8 285 1.22E-55 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21735 ba2d7290c928ba000583680519279bfe 335 Pfam PF07728 AAA domain (dynein-related subfamily) 36 166 1.0E-13 T 26-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RGE_RS21735 ba2d7290c928ba000583680519279bfe 335 PANTHER PTHR32039:SF10 4 306 7.8E-98 T 26-04-2016 RGE_RS18245 a97303faa6939ad57361c3e0abc3e3eb 509 Gene3D G3DSA:1.10.287.950 268 472 7.4E-58 T 26-04-2016 RGE_RS18245 a97303faa6939ad57361c3e0abc3e3eb 509 SUPERFAMILY SSF58104 244 501 1.7E-64 T 26-04-2016 RGE_RS18245 a97303faa6939ad57361c3e0abc3e3eb 509 SMART SM00283 253 500 1.1E-87 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS18245 a97303faa6939ad57361c3e0abc3e3eb 509 PANTHER PTHR32089:SF63 132 503 1.9E-135 T 26-04-2016 RGE_RS18245 a97303faa6939ad57361c3e0abc3e3eb 509 PANTHER PTHR32089 132 503 1.9E-135 T 26-04-2016 RGE_RS18245 a97303faa6939ad57361c3e0abc3e3eb 509 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 314 499 3.3E-58 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS01370 80d024d2e39b6bea281f12d19aa51a3c 1192 PANTHER PTHR18968 356 787 2.1E-171 T 26-04-2016 RGE_RS01370 80d024d2e39b6bea281f12d19aa51a3c 1192 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 483 577 9.4E-7 T 26-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RGE_RS01370 80d024d2e39b6bea281f12d19aa51a3c 1192 Gene3D G3DSA:3.40.50.970 124 225 4.7E-4 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS01370 80d024d2e39b6bea281f12d19aa51a3c 1192 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 759 946 1.0E-22 T 26-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RGE_RS01370 80d024d2e39b6bea281f12d19aa51a3c 1192 SUPERFAMILY SSF52518 463 651 1.71E-15 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS01370 80d024d2e39b6bea281f12d19aa51a3c 1192 Gene3D G3DSA:3.40.50.970 516 697 1.4E-12 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS01370 80d024d2e39b6bea281f12d19aa51a3c 1192 Gene3D G3DSA:3.40.920.10 753 952 9.8E-15 T 26-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RGE_RS01370 80d024d2e39b6bea281f12d19aa51a3c 1192 SUPERFAMILY SSF53323 750 994 5.62E-32 T 26-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RGE_RS01370 80d024d2e39b6bea281f12d19aa51a3c 1192 SUPERFAMILY SSF52518 28 208 1.09E-17 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS01370 80d024d2e39b6bea281f12d19aa51a3c 1192 PANTHER PTHR18968:SF134 356 787 2.1E-171 T 26-04-2016 RGE_RS23220 03f86f7be574103444b687ae36778608 736 Gene3D G3DSA:3.40.50.2300 619 735 1.5E-29 T 26-04-2016 RGE_RS23220 03f86f7be574103444b687ae36778608 736 PANTHER PTHR24423 358 735 5.9E-110 T 26-04-2016 RGE_RS23220 03f86f7be574103444b687ae36778608 736 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 481 596 5.9E-14 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23220 03f86f7be574103444b687ae36778608 736 SUPERFAMILY SSF47384 365 434 1.75E-6 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23220 03f86f7be574103444b687ae36778608 736 PANTHER PTHR24423:SF438 358 735 5.9E-110 T 26-04-2016 RGE_RS23220 03f86f7be574103444b687ae36778608 736 Pfam PF00072 Response regulator receiver domain 621 727 5.2E-16 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23220 03f86f7be574103444b687ae36778608 736 Pfam PF00672 HAMP domain 276 343 1.3E-8 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS23220 03f86f7be574103444b687ae36778608 736 SUPERFAMILY SSF55874 433 599 2.36E-33 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23220 03f86f7be574103444b687ae36778608 736 SMART SM00448 619 727 3.4E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS23220 03f86f7be574103444b687ae36778608 736 SMART SM00387 480 598 1.6E-23 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23220 03f86f7be574103444b687ae36778608 736 SUPERFAMILY SSF52172 619 734 8.97E-29 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS23220 03f86f7be574103444b687ae36778608 736 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 555 3.6E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23220 03f86f7be574103444b687ae36778608 736 PRINTS PR00344 Bacterial sensor protein C-terminal signature 558 576 3.6E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23220 03f86f7be574103444b687ae36778608 736 PRINTS PR00344 Bacterial sensor protein C-terminal signature 582 595 3.6E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23220 03f86f7be574103444b687ae36778608 736 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 541 3.6E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23220 03f86f7be574103444b687ae36778608 736 Gene3D G3DSA:3.30.565.10 440 596 4.1E-31 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16540 da89dc632a42d9ffcca8a670098184e1 452 PANTHER PTHR32060 94 380 2.5E-15 T 26-04-2016 RGE_RS16540 da89dc632a42d9ffcca8a670098184e1 452 SUPERFAMILY SSF50156 111 216 4.21E-14 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS16540 da89dc632a42d9ffcca8a670098184e1 452 Gene3D G3DSA:2.30.42.10 114 195 1.1E-12 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS16540 da89dc632a42d9ffcca8a670098184e1 452 SMART SM00228 115 193 5.9E-9 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS16540 da89dc632a42d9ffcca8a670098184e1 452 Pfam PF13180 PDZ domain 131 201 4.8E-7 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS16540 da89dc632a42d9ffcca8a670098184e1 452 Pfam PF03572 Peptidase family S41 223 355 1.1E-16 T 26-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RGE_RS16540 da89dc632a42d9ffcca8a670098184e1 452 Gene3D G3DSA:3.90.226.10 196 417 1.3E-27 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS16540 da89dc632a42d9ffcca8a670098184e1 452 SUPERFAMILY SSF52096 123 138 1.24E-29 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS16540 da89dc632a42d9ffcca8a670098184e1 452 SUPERFAMILY SSF52096 217 409 1.24E-29 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS12140 a639211e851a92c6f04a8b18453d6bd2 178 Pfam PF01569 PAP2 superfamily 75 175 1.5E-17 T 26-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RGE_RS12140 a639211e851a92c6f04a8b18453d6bd2 178 PANTHER PTHR14969 13 176 9.4E-25 T 26-04-2016 RGE_RS12140 a639211e851a92c6f04a8b18453d6bd2 178 Gene3D G3DSA:1.20.144.10 15 175 1.3E-37 T 26-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RGE_RS12140 a639211e851a92c6f04a8b18453d6bd2 178 SMART SM00014 65 175 1.5E-12 T 26-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RGE_RS12140 a639211e851a92c6f04a8b18453d6bd2 178 SUPERFAMILY SSF48317 13 175 1.57E-36 T 26-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 SUPERFAMILY SSF81653 192 288 3.53E-23 T 26-04-2016 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 Gene3D G3DSA:2.70.150.10 169 288 3.3E-24 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 Pfam PF00122 E1-E2 ATPase 163 371 8.2E-44 T 26-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 382 388 - T 26-04-2016 IPR018303 P-type ATPase, phosphorylation site RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 SUPERFAMILY SSF56784 378 398 8.76E-44 T 26-04-2016 IPR023214 HAD-like domain RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 SUPERFAMILY SSF56784 439 682 8.76E-44 T 26-04-2016 IPR023214 HAD-like domain RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 161 662 1.1E-63 T 26-04-2016 IPR001757 P-type ATPase GO:0016021 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 PANTHER PTHR24093:SF50 156 684 1.5E-112 T 26-04-2016 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 Gene3D G3DSA:3.40.50.1000 510 650 5.5E-42 T 26-04-2016 IPR023214 HAD-like domain RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 Gene3D G3DSA:3.40.50.1000 356 395 5.5E-42 T 26-04-2016 IPR023214 HAD-like domain RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 Gene3D G3DSA:3.40.1110.10 396 509 2.6E-13 T 26-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 238 252 8.8E-27 T 26-04-2016 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 606 618 8.8E-27 T 26-04-2016 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 583 602 8.8E-27 T 26-04-2016 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 530 540 8.8E-27 T 26-04-2016 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 507 518 8.8E-27 T 26-04-2016 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 380 394 8.8E-27 T 26-04-2016 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 Pfam PF00702 haloacid dehalogenase-like hydrolase 377 596 2.4E-33 T 26-04-2016 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 139 684 1.2E-142 T 26-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RGE_RS14905 48e849999d7b19f779cc56e96f46dd7d 696 PANTHER PTHR24093 156 684 1.5E-112 T 26-04-2016 RGE_RS05070 a92304d2c19a5fdca90181e1c2baa06f 129 PANTHER PTHR21256 3 129 2.2E-61 T 26-04-2016 RGE_RS05070 a92304d2c19a5fdca90181e1c2baa06f 129 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 29 106 9.3E-35 T 26-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 RGE_RS05070 a92304d2c19a5fdca90181e1c2baa06f 129 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 52 106 4.0E-24 T 26-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 RGE_RS05070 a92304d2c19a5fdca90181e1c2baa06f 129 SUPERFAMILY SSF141734 3 122 2.35E-48 T 26-04-2016 RGE_RS05070 a92304d2c19a5fdca90181e1c2baa06f 129 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 3 110 32.674 T 26-04-2016 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 RGE_RS11950 8cfed0300b27379a010778fd38d06b68 160 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 160 25.781 T 26-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RGE_RS11950 8cfed0300b27379a010778fd38d06b68 160 SUPERFAMILY SSF55200 72 159 2.22E-30 T 26-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RGE_RS11950 8cfed0300b27379a010778fd38d06b68 160 SUPERFAMILY SSF54364 2 66 2.62E-23 T 26-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RGE_RS11950 8cfed0300b27379a010778fd38d06b68 160 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 2 65 2.2E-24 T 26-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RGE_RS11950 8cfed0300b27379a010778fd38d06b68 160 ProSitePatterns PS00938 Initiation factor 3 signature. 47 60 - T 26-04-2016 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 RGE_RS11950 8cfed0300b27379a010778fd38d06b68 160 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 72 158 3.1E-36 T 26-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RGE_RS11950 8cfed0300b27379a010778fd38d06b68 160 Gene3D G3DSA:3.10.20.80 2 66 5.6E-28 T 26-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RGE_RS11950 8cfed0300b27379a010778fd38d06b68 160 PANTHER PTHR10938 1 158 1.5E-57 T 26-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RGE_RS11950 8cfed0300b27379a010778fd38d06b68 160 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 3 160 2.2E-60 T 26-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RGE_RS11950 8cfed0300b27379a010778fd38d06b68 160 Gene3D G3DSA:3.30.110.10 68 160 3.4E-37 T 26-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RGE_RS05320 207dbeea317b50dc6d9eb4d87b2f3227 480 PANTHER PTHR12526 160 297 8.4E-98 T 26-04-2016 RGE_RS05320 207dbeea317b50dc6d9eb4d87b2f3227 480 PANTHER PTHR12526 360 477 8.4E-98 T 26-04-2016 RGE_RS05320 207dbeea317b50dc6d9eb4d87b2f3227 480 Pfam PF01050 Mannose-6-phosphate isomerase 323 473 2.1E-71 T 26-04-2016 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 RGE_RS05320 207dbeea317b50dc6d9eb4d87b2f3227 480 Pfam PF00483 Nucleotidyl transferase 7 295 2.8E-58 T 26-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RGE_RS05320 207dbeea317b50dc6d9eb4d87b2f3227 480 PANTHER PTHR12526:SF387 160 297 8.4E-98 T 26-04-2016 RGE_RS05320 207dbeea317b50dc6d9eb4d87b2f3227 480 PANTHER PTHR12526:SF387 360 477 8.4E-98 T 26-04-2016 RGE_RS05320 207dbeea317b50dc6d9eb4d87b2f3227 480 SUPERFAMILY SSF51182 189 478 1.2E-82 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS05320 207dbeea317b50dc6d9eb4d87b2f3227 480 Gene3D G3DSA:2.60.120.10 365 478 4.0E-49 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS05320 207dbeea317b50dc6d9eb4d87b2f3227 480 SUPERFAMILY SSF53448 5 289 8.92E-60 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS05320 207dbeea317b50dc6d9eb4d87b2f3227 480 Gene3D G3DSA:3.90.550.10 5 279 2.1E-90 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS05320 207dbeea317b50dc6d9eb4d87b2f3227 480 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 6 477 1.7E-194 T 26-04-2016 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 RGE_RS18250 564bb7180296e25f365f37ec14f7f93c 132 SUPERFAMILY SSF53850 18 129 1.41E-10 T 26-04-2016 RGE_RS18250 564bb7180296e25f365f37ec14f7f93c 132 Gene3D G3DSA:3.40.190.10 23 128 2.5E-7 T 26-04-2016 RGE_RS07195 10a1961218154d305e10c754e17ebc7a 127 Pfam PF09345 Domain of unknown function (DUF1987) 13 111 6.1E-36 T 26-04-2016 IPR018530 Domain of unknown function DUF1987 RGE_RS04420 bd9ce3d120a703d4f8b995bf283612fd 271 PANTHER PTHR26402 7 237 1.2E-31 T 26-04-2016 RGE_RS04420 bd9ce3d120a703d4f8b995bf283612fd 271 Pfam PF00072 Response regulator receiver domain 10 123 2.7E-16 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04420 bd9ce3d120a703d4f8b995bf283612fd 271 SMART SM00850 175 269 1.1E-18 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS04420 bd9ce3d120a703d4f8b995bf283612fd 271 Gene3D G3DSA:2.40.50.40 168 232 5.5E-14 T 26-04-2016 RGE_RS04420 bd9ce3d120a703d4f8b995bf283612fd 271 SMART SM00448 7 123 1.1E-20 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04420 bd9ce3d120a703d4f8b995bf283612fd 271 SUPERFAMILY SSF52172 9 139 6.69E-27 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS04420 bd9ce3d120a703d4f8b995bf283612fd 271 Pfam PF04397 LytTr DNA-binding domain 177 269 4.3E-19 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS04420 bd9ce3d120a703d4f8b995bf283612fd 271 PANTHER PTHR26402:SF524 7 237 1.2E-31 T 26-04-2016 RGE_RS04420 bd9ce3d120a703d4f8b995bf283612fd 271 Gene3D G3DSA:3.40.50.2300 4 132 1.1E-23 T 26-04-2016 RGE_RS07850 befc954e5d7fe62489eab8a7afcbcb92 379 SUPERFAMILY SSF103025 8 291 1.88E-85 T 26-04-2016 RGE_RS07850 befc954e5d7fe62489eab8a7afcbcb92 379 Gene3D G3DSA:3.30.1360.120 8 60 5.2E-54 T 26-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RGE_RS07850 befc954e5d7fe62489eab8a7afcbcb92 379 Gene3D G3DSA:3.30.1360.120 153 240 5.2E-54 T 26-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RGE_RS07850 befc954e5d7fe62489eab8a7afcbcb92 379 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 276 369 1.6E-19 T 26-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RGE_RS07850 befc954e5d7fe62489eab8a7afcbcb92 379 PANTHER PTHR13847:SF209 1 371 4.5E-141 T 26-04-2016 RGE_RS07850 befc954e5d7fe62489eab8a7afcbcb92 379 PANTHER PTHR13847 1 371 4.5E-141 T 26-04-2016 RGE_RS07850 befc954e5d7fe62489eab8a7afcbcb92 379 PIRSF PIRSF006487 1 378 3.7E-76 T 26-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RGE_RS07850 befc954e5d7fe62489eab8a7afcbcb92 379 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 9 372 1.7E-98 T 26-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RGE_RS07850 befc954e5d7fe62489eab8a7afcbcb92 379 SUPERFAMILY SSF101790 286 378 5.89E-24 T 26-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RGE_RS07850 befc954e5d7fe62489eab8a7afcbcb92 379 Gene3D G3DSA:3.30.70.1400 61 140 6.4E-27 T 26-04-2016 RGE_RS07850 befc954e5d7fe62489eab8a7afcbcb92 379 Gene3D G3DSA:2.40.30.110 294 378 5.4E-24 T 26-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RGE_RS07850 befc954e5d7fe62489eab8a7afcbcb92 379 Pfam PF01571 Aminomethyltransferase folate-binding domain 13 263 4.4E-83 T 26-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RGE_RS07210 d47859ff3eeab532c2a87b388ddbb9bc 435 PANTHER PTHR30354:SF2 1 435 1.0E-170 T 26-04-2016 RGE_RS07210 d47859ff3eeab532c2a87b388ddbb9bc 435 PANTHER PTHR30354 1 435 1.0E-170 T 26-04-2016 RGE_RS07210 d47859ff3eeab532c2a87b388ddbb9bc 435 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 2 428 4.1E-97 T 26-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RGE_RS07210 d47859ff3eeab532c2a87b388ddbb9bc 435 PIRSF PIRSF002746 1 435 4.1E-137 T 26-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RGE_RS07210 d47859ff3eeab532c2a87b388ddbb9bc 435 Pfam PF02447 GntP family permease 1 432 6.6E-125 T 26-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RGE_RS21030 4d06b96e1d1f0015234cae8e949a56bf 440 Gene3D G3DSA:3.50.50.60 7 173 4.8E-25 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS21030 4d06b96e1d1f0015234cae8e949a56bf 440 PANTHER PTHR10617 3 416 3.5E-132 T 26-04-2016 RGE_RS21030 4d06b96e1d1f0015234cae8e949a56bf 440 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 4.9E-7 T 26-04-2016 RGE_RS21030 4d06b96e1d1f0015234cae8e949a56bf 440 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 4.9E-7 T 26-04-2016 RGE_RS21030 4d06b96e1d1f0015234cae8e949a56bf 440 Gene3D G3DSA:3.30.9.10 174 347 1.9E-19 T 26-04-2016 RGE_RS21030 4d06b96e1d1f0015234cae8e949a56bf 440 SUPERFAMILY SSF54373 187 292 7.45E-23 T 26-04-2016 RGE_RS21030 4d06b96e1d1f0015234cae8e949a56bf 440 Pfam PF01494 FAD binding domain 11 338 8.2E-9 T 26-04-2016 IPR002938 FAD-binding domain GO:0071949 RGE_RS21030 4d06b96e1d1f0015234cae8e949a56bf 440 PANTHER PTHR10617:SF98 3 416 3.5E-132 T 26-04-2016 RGE_RS21030 4d06b96e1d1f0015234cae8e949a56bf 440 SUPERFAMILY SSF51905 290 361 3.0E-43 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS21030 4d06b96e1d1f0015234cae8e949a56bf 440 SUPERFAMILY SSF51905 10 180 3.0E-43 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13655 1ac7ccde865043d981c96cee40bb534e 513 Pfam PF00682 HMGL-like 5 274 2.3E-97 T 26-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RGE_RS13655 1ac7ccde865043d981c96cee40bb534e 513 SMART SM00917 371 503 7.7E-36 T 26-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS13655 1ac7ccde865043d981c96cee40bb534e 513 PANTHER PTHR10277 1 511 1.2E-240 T 26-04-2016 RGE_RS13655 1ac7ccde865043d981c96cee40bb534e 513 SUPERFAMILY SSF110921 391 501 4.71E-24 T 26-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS13655 1ac7ccde865043d981c96cee40bb534e 513 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 26-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS13655 1ac7ccde865043d981c96cee40bb534e 513 SUPERFAMILY SSF51569 1 292 2.38E-97 T 26-04-2016 RGE_RS13655 1ac7ccde865043d981c96cee40bb534e 513 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 499 2.5E-209 T 26-04-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS13655 1ac7ccde865043d981c96cee40bb534e 513 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 512 41.422 T 26-04-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS13655 1ac7ccde865043d981c96cee40bb534e 513 PANTHER PTHR10277:SF9 1 511 1.2E-240 T 26-04-2016 RGE_RS13655 1ac7ccde865043d981c96cee40bb534e 513 Pfam PF08502 LeuA allosteric (dimerisation) domain 371 502 5.1E-32 T 26-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS13655 1ac7ccde865043d981c96cee40bb534e 513 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 26-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS13655 1ac7ccde865043d981c96cee40bb534e 513 Gene3D G3DSA:3.20.20.70 1 348 1.4E-146 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS16305 2174f605038cde09a2f6536d4a86dd39 543 PANTHER PTHR33712 1 543 9.4E-123 T 26-04-2016 RGE_RS16305 2174f605038cde09a2f6536d4a86dd39 543 Gene3D G3DSA:3.40.50.1980 290 443 6.4E-35 T 26-04-2016 RGE_RS16305 2174f605038cde09a2f6536d4a86dd39 543 Hamap MF_00353 Light-independent protochlorophyllide reductase subunit B [bchB]. 1 542 51.591 T 26-04-2016 IPR005969 Light-independent protochlorophyllide reductase, B subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16305 2174f605038cde09a2f6536d4a86dd39 543 Gene3D G3DSA:3.40.50.1980 164 265 7.3E-16 T 26-04-2016 RGE_RS16305 2174f605038cde09a2f6536d4a86dd39 543 PANTHER PTHR33712:SF5 1 543 9.4E-123 T 26-04-2016 RGE_RS16305 2174f605038cde09a2f6536d4a86dd39 543 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 494 538 7.6E-20 T 26-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16305 2174f605038cde09a2f6536d4a86dd39 543 PIRSF PIRSF000163 1 543 4.4E-215 T 26-04-2016 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16305 2174f605038cde09a2f6536d4a86dd39 543 TIGRFAM TIGR01278 DPOR_BchB: light-independent protochlorophyllide reductase, B subunit 1 542 6.0E-187 T 26-04-2016 IPR005969 Light-independent protochlorophyllide reductase, B subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16305 2174f605038cde09a2f6536d4a86dd39 543 SUPERFAMILY SSF53807 3 438 2.32E-114 T 26-04-2016 RGE_RS16305 2174f605038cde09a2f6536d4a86dd39 543 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 13 419 1.8E-85 T 26-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RGE_RS16305 2174f605038cde09a2f6536d4a86dd39 543 Gene3D G3DSA:3.40.50.1980 13 149 1.9E-20 T 26-04-2016 RGE_RS20500 186f0d3b9415a9b4bf2ee576d3d2a957 340 Gene3D G3DSA:3.30.70.270 153 317 1.1E-44 T 26-04-2016 RGE_RS20500 186f0d3b9415a9b4bf2ee576d3d2a957 340 SMART SM00267 140 318 9.2E-35 T 26-04-2016 IPR000160 GGDEF domain RGE_RS20500 186f0d3b9415a9b4bf2ee576d3d2a957 340 PANTHER PTHR10799:SF750 197 315 1.8E-19 T 26-04-2016 RGE_RS20500 186f0d3b9415a9b4bf2ee576d3d2a957 340 PANTHER PTHR10799 197 315 1.8E-19 T 26-04-2016 RGE_RS20500 186f0d3b9415a9b4bf2ee576d3d2a957 340 Pfam PF00990 Diguanylate cyclase, GGDEF domain 153 314 3.7E-28 T 26-04-2016 IPR000160 GGDEF domain RGE_RS20500 186f0d3b9415a9b4bf2ee576d3d2a957 340 SUPERFAMILY SSF55073 156 316 5.49E-37 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS20500 186f0d3b9415a9b4bf2ee576d3d2a957 340 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 150 317 8.3E-34 T 26-04-2016 IPR000160 GGDEF domain RGE_RS18940 f50740d4cccb6851a9c6df36ef9e7bff 172 Pfam PF00583 Acetyltransferase (GNAT) family 67 138 1.4E-10 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS18940 f50740d4cccb6851a9c6df36ef9e7bff 172 SUPERFAMILY SSF55729 18 140 3.04E-20 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS18940 f50740d4cccb6851a9c6df36ef9e7bff 172 Gene3D G3DSA:3.40.630.30 18 140 1.5E-18 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS02905 0e3aa03611ad5bb0fb59531a8aa9a743 503 SMART SM00098 36 503 3.2E-10 T 26-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RGE_RS02905 0e3aa03611ad5bb0fb59531a8aa9a743 503 Gene3D G3DSA:3.40.720.10 15 87 3.2E-93 T 26-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RGE_RS02905 0e3aa03611ad5bb0fb59531a8aa9a743 503 Gene3D G3DSA:3.40.720.10 133 502 3.2E-93 T 26-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RGE_RS02905 0e3aa03611ad5bb0fb59531a8aa9a743 503 PANTHER PTHR11596 333 415 1.5E-48 T 26-04-2016 RGE_RS02905 0e3aa03611ad5bb0fb59531a8aa9a743 503 PANTHER PTHR11596 133 316 1.5E-48 T 26-04-2016 RGE_RS02905 0e3aa03611ad5bb0fb59531a8aa9a743 503 Pfam PF00245 Alkaline phosphatase 124 423 1.3E-39 T 26-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RGE_RS02905 0e3aa03611ad5bb0fb59531a8aa9a743 503 SUPERFAMILY SSF53649 12 91 1.03E-74 T 26-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RGE_RS02905 0e3aa03611ad5bb0fb59531a8aa9a743 503 SUPERFAMILY SSF53649 259 501 1.03E-74 T 26-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RGE_RS02905 0e3aa03611ad5bb0fb59531a8aa9a743 503 SUPERFAMILY SSF53649 133 231 1.03E-74 T 26-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RGE_RS02905 0e3aa03611ad5bb0fb59531a8aa9a743 503 PANTHER PTHR11596:SF5 333 415 1.5E-48 T 26-04-2016 RGE_RS02905 0e3aa03611ad5bb0fb59531a8aa9a743 503 PANTHER PTHR11596:SF5 133 316 1.5E-48 T 26-04-2016 RGE_RS10465 343ce3ce69f2814f8e66fe6f3bece19b 242 PANTHER PTHR21367 20 237 2.9E-58 T 26-04-2016 IPR030700 Arginine-tRNA-protein transferase RGE_RS10465 343ce3ce69f2814f8e66fe6f3bece19b 242 PANTHER PTHR21367:SF0 20 237 2.9E-58 T 26-04-2016 RGE_RS10465 343ce3ce69f2814f8e66fe6f3bece19b 242 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 20 90 4.3E-19 T 26-04-2016 IPR007471 Arginine-tRNA-protein transferase, N-terminal GO:0004057|GO:0016598 RGE_RS10465 343ce3ce69f2814f8e66fe6f3bece19b 242 Hamap MF_00689 Putative arginyl-tRNA--protein transferase [ate]. 3 240 44.856 T 26-04-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic RGE_RS10465 343ce3ce69f2814f8e66fe6f3bece19b 242 PIRSF PIRSF037208 3 241 4.9E-89 T 26-04-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic RGE_RS10465 343ce3ce69f2814f8e66fe6f3bece19b 242 SUPERFAMILY SSF55729 85 238 6.36E-16 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS10465 343ce3ce69f2814f8e66fe6f3bece19b 242 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 110 231 1.2E-35 T 26-04-2016 IPR007472 Arginine-tRNA-protein transferase, C-terminal GO:0004057|GO:0016598 RGE_RS12395 51c21ff0f0ec49b610f5f15a5ea9d23a 408 PANTHER PTHR33712 1 401 2.2E-41 T 26-04-2016 RGE_RS12395 51c21ff0f0ec49b610f5f15a5ea9d23a 408 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 10 401 9.8E-55 T 26-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RGE_RS12395 51c21ff0f0ec49b610f5f15a5ea9d23a 408 SUPERFAMILY SSF53807 7 402 2.26E-63 T 26-04-2016 RGE_RS12395 51c21ff0f0ec49b610f5f15a5ea9d23a 408 Gene3D G3DSA:3.40.50.1980 10 135 1.3E-26 T 26-04-2016 RGE_RS05780 13583e7ead38db91eaec5a28a9ff06a0 447 PANTHER PTHR11587 1 427 4.5E-169 T 26-04-2016 RGE_RS05780 13583e7ead38db91eaec5a28a9ff06a0 447 Hamap MF_00581 Argininosuccinate synthase [argG]. 2 447 69.531 T 26-04-2016 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS05780 13583e7ead38db91eaec5a28a9ff06a0 447 Gene3D G3DSA:3.40.50.620 5 175 4.7E-43 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS05780 13583e7ead38db91eaec5a28a9ff06a0 447 TIGRFAM TIGR00032 argG: argininosuccinate synthase 14 421 1.7E-155 T 26-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS05780 13583e7ead38db91eaec5a28a9ff06a0 447 Gene3D G3DSA:1.10.287.400 378 441 2.7E-32 T 26-04-2016 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS05780 13583e7ead38db91eaec5a28a9ff06a0 447 Gene3D G3DSA:3.90.1260.10 176 372 3.5E-64 T 26-04-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS05780 13583e7ead38db91eaec5a28a9ff06a0 447 SUPERFAMILY SSF52402 6 188 4.68E-31 T 26-04-2016 RGE_RS05780 13583e7ead38db91eaec5a28a9ff06a0 447 SUPERFAMILY SSF69864 191 440 5.62E-78 T 26-04-2016 RGE_RS05780 13583e7ead38db91eaec5a28a9ff06a0 447 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 130 141 - T 26-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS05780 13583e7ead38db91eaec5a28a9ff06a0 447 Pfam PF00764 Arginosuccinate synthase 17 409 1.3E-58 T 26-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS05780 13583e7ead38db91eaec5a28a9ff06a0 447 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 18 26 - T 26-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS05780 13583e7ead38db91eaec5a28a9ff06a0 447 PANTHER PTHR11587:SF2 1 427 4.5E-169 T 26-04-2016 RGE_RS03230 b37a02fefaaf422d535434057f8fe6a5 293 Gene3D G3DSA:1.10.10.10 2 84 9.5E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS03230 b37a02fefaaf422d535434057f8fe6a5 293 Pfam PF03466 LysR substrate binding domain 94 286 1.6E-43 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS03230 b37a02fefaaf422d535434057f8fe6a5 293 SUPERFAMILY SSF53850 95 286 1.36E-38 T 26-04-2016 RGE_RS03230 b37a02fefaaf422d535434057f8fe6a5 293 Gene3D G3DSA:3.40.190.10 174 261 2.8E-14 T 26-04-2016 RGE_RS03230 b37a02fefaaf422d535434057f8fe6a5 293 PANTHER PTHR30126 3 286 2.4E-103 T 26-04-2016 RGE_RS03230 b37a02fefaaf422d535434057f8fe6a5 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 8.8E-16 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS03230 b37a02fefaaf422d535434057f8fe6a5 293 Gene3D G3DSA:3.40.190.10 95 173 5.2E-15 T 26-04-2016 RGE_RS03230 b37a02fefaaf422d535434057f8fe6a5 293 PANTHER PTHR30126:SF36 3 286 2.4E-103 T 26-04-2016 RGE_RS03230 b37a02fefaaf422d535434057f8fe6a5 293 SUPERFAMILY SSF46785 1 113 6.95E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 Gene3D G3DSA:2.160.20.10 11 378 1.8E-39 T 26-04-2016 IPR012334 Pectin lyase fold RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 Pfam PF05048 Periplasmic copper-binding protein (NosD) 143 365 5.7E-57 T 26-04-2016 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 TIGRFAM TIGR04247 NosD_copper_fam: nitrous oxide reductase family maturation protein NosD 33 402 1.3E-132 T 26-04-2016 IPR026464 Nitrous oxide reductase family maturation protein NosD RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 249 290 9.6E-5 T 26-04-2016 IPR022441 Parallel beta-helix repeat-2 RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 SMART SM00722 38 186 3.1E-8 T 26-04-2016 IPR006633 Carbohydrate-binding/sugar hydrolysis domain RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 SMART SM00722 192 349 28.0 T 26-04-2016 IPR006633 Carbohydrate-binding/sugar hydrolysis domain RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 SUPERFAMILY SSF51126 24 388 1.78E-62 T 26-04-2016 IPR011050 Pectin lyase fold/virulence factor RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 SMART SM00710 84 112 46.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 SMART SM00710 136 165 55.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 SMART SM00710 114 135 1300.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 SMART SM00710 188 209 580.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 SMART SM00710 255 276 190.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 SMART SM00710 300 321 120.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 SMART SM00710 166 187 2600.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 SMART SM00710 277 298 39.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 SMART SM00710 232 254 2100.0 T 26-04-2016 IPR006626 Parallel beta-helix repeat RGE_RS09360 ceee1bfa05769aed0570f6616f2f532d 416 PANTHER PTHR22990 30 316 4.4E-12 T 26-04-2016 RGE_RS20160 c9e66d049003511dbbd12a92385037bc 362 SUPERFAMILY SSF56801 69 340 1.18E-7 T 26-04-2016 RGE_RS20160 c9e66d049003511dbbd12a92385037bc 362 Pfam PF04443 Acyl-protein synthetase, LuxE 23 353 2.6E-49 T 26-04-2016 IPR007534 Acyl-protein synthetase, LuxE GO:0008218|GO:0047474 MetaCyc: PWY-7723|UniPathway: UPA00569 RGE_RS06015 4f06d4e9864a729f6fac8f7d9e229b87 93 Pfam PF03937 Flavinator of succinate dehydrogenase 12 83 2.6E-20 T 26-04-2016 IPR005631 Flavinator of succinate dehydrogenase RGE_RS06015 4f06d4e9864a729f6fac8f7d9e229b87 93 SUPERFAMILY SSF109910 3 78 3.14E-17 T 26-04-2016 IPR005631 Flavinator of succinate dehydrogenase RGE_RS06015 4f06d4e9864a729f6fac8f7d9e229b87 93 Gene3D G3DSA:1.10.150.250 6 85 7.5E-21 T 26-04-2016 IPR005631 Flavinator of succinate dehydrogenase RGE_RS23050 45949cae034b220b6d1b244838bcbef4 285 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 210 252 - T 26-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RGE_RS23050 45949cae034b220b6d1b244838bcbef4 285 SMART SM00342 173 256 1.7E-25 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS23050 45949cae034b220b6d1b244838bcbef4 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 225 240 1.8E-6 T 26-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RGE_RS23050 45949cae034b220b6d1b244838bcbef4 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 240 256 1.8E-6 T 26-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RGE_RS23050 45949cae034b220b6d1b244838bcbef4 285 Gene3D G3DSA:1.10.10.60 160 210 9.4E-11 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23050 45949cae034b220b6d1b244838bcbef4 285 PANTHER PTHR11019 160 264 3.8E-31 T 26-04-2016 RGE_RS23050 45949cae034b220b6d1b244838bcbef4 285 SUPERFAMILY SSF46689 209 257 1.08E-12 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23050 45949cae034b220b6d1b244838bcbef4 285 Pfam PF12833 Helix-turn-helix domain 179 257 2.8E-21 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS23050 45949cae034b220b6d1b244838bcbef4 285 SUPERFAMILY SSF46689 160 207 5.38E-6 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23050 45949cae034b220b6d1b244838bcbef4 285 Gene3D G3DSA:1.10.10.60 211 257 2.0E-18 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 PANTHER PTHR30081 144 326 4.9E-65 T 26-04-2016 RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 PANTHER PTHR30081 7 121 4.9E-65 T 26-04-2016 RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 PRINTS PR01755 Bacterial translocase SecF protein signature 259 274 9.1E-26 T 26-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 PRINTS PR01755 Bacterial translocase SecF protein signature 179 193 9.1E-26 T 26-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 PRINTS PR01755 Bacterial translocase SecF protein signature 227 245 9.1E-26 T 26-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 PRINTS PR01755 Bacterial translocase SecF protein signature 37 52 9.1E-26 T 26-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 Gene3D G3DSA:1.20.1640.10 160 324 2.0E-24 T 26-04-2016 RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 137 308 3.1E-49 T 26-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 Pfam PF07549 SecD/SecF GG Motif 32 59 1.0E-8 T 26-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 38 311 1.0E-71 T 26-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 10 322 28.647 T 26-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 SUPERFAMILY SSF82866 71 118 1.09E-36 T 26-04-2016 RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 SUPERFAMILY SSF82866 168 322 1.09E-36 T 26-04-2016 RGE_RS02225 9b2f7305ba057c9f4bb5326aee31a51e 344 Pfam PF02355 Protein export membrane protein 147 319 1.7E-60 T 26-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RGE_RS22315 e0ec4133ca1530cf384edd1716ce5e0e 246 PANTHER PTHR10889:SF3 5 243 6.8E-69 T 26-04-2016 RGE_RS22315 e0ec4133ca1530cf384edd1716ce5e0e 246 PIRSF PIRSF001357 6 239 1.2E-59 T 26-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 RGE_RS22315 e0ec4133ca1530cf384edd1716ce5e0e 246 Gene3D G3DSA:3.20.20.70 5 234 2.9E-66 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS22315 e0ec4133ca1530cf384edd1716ce5e0e 246 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 13 212 3.2E-49 T 26-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 RGE_RS22315 e0ec4133ca1530cf384edd1716ce5e0e 246 SMART SM01133 10 232 3.5E-58 T 26-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 RGE_RS22315 e0ec4133ca1530cf384edd1716ce5e0e 246 Pfam PF01791 DeoC/LacD family aldolase 12 231 7.3E-24 T 26-04-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 RGE_RS22315 e0ec4133ca1530cf384edd1716ce5e0e 246 SUPERFAMILY SSF51569 6 233 1.26E-59 T 26-04-2016 RGE_RS22315 e0ec4133ca1530cf384edd1716ce5e0e 246 PANTHER PTHR10889 5 243 6.8E-69 T 26-04-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 RGE_RS03400 09737119a7c372c0df3e977798826ace 532 Pfam PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) 14 480 3.0E-99 T 26-04-2016 IPR013381 CRISPR-associated protein Cse1 RGE_RS03400 09737119a7c372c0df3e977798826ace 532 TIGRFAM TIGR02547 casA_cse1: CRISPR type I-E/ECOLI-associated protein CasA/Cse1 14 485 2.3E-51 T 26-04-2016 IPR013381 CRISPR-associated protein Cse1 RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 SMART SM00382 28 227 4.5E-15 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 SMART SM00382 341 512 1.3E-14 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 PANTHER PTHR19211:SF45 1 575 1.7E-209 T 26-04-2016 RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 Pfam PF16326 ABC transporter C-terminal domain 565 633 1.7E-21 T 26-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 SUPERFAMILY SSF52540 309 503 4.96E-44 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 ProSitePatterns PS00211 ABC transporters family signature. 438 452 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 Pfam PF00005 ABC transporter 335 466 6.7E-21 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 Pfam PF00005 ABC transporter 19 175 1.5E-25 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 Gene3D G3DSA:3.40.50.300 2 265 4.7E-52 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 Pfam PF12848 ABC transporter 221 294 4.5E-10 T 26-04-2016 IPR032781 ABC-transporter extension domain RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 PANTHER PTHR19211 1 575 1.7E-209 T 26-04-2016 RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 SUPERFAMILY SSF52540 3 229 6.49E-48 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01195 2533fdf63e72edc8a8e558d09d059221 637 Gene3D G3DSA:3.40.50.300 318 504 1.5E-40 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09490 3b32e6cca3f022833d3dff206c16dc1e 338 SUPERFAMILY SSF53850 92 305 3.43E-38 T 26-04-2016 RGE_RS09490 3b32e6cca3f022833d3dff206c16dc1e 338 PANTHER PTHR30126 1 313 4.7E-132 T 26-04-2016 RGE_RS09490 3b32e6cca3f022833d3dff206c16dc1e 338 Gene3D G3DSA:3.40.190.10 92 176 7.2E-21 T 26-04-2016 RGE_RS09490 3b32e6cca3f022833d3dff206c16dc1e 338 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.9E-9 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS09490 3b32e6cca3f022833d3dff206c16dc1e 338 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.9E-9 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS09490 3b32e6cca3f022833d3dff206c16dc1e 338 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.9E-9 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS09490 3b32e6cca3f022833d3dff206c16dc1e 338 PANTHER PTHR30126:SF6 1 313 4.7E-132 T 26-04-2016 RGE_RS09490 3b32e6cca3f022833d3dff206c16dc1e 338 Gene3D G3DSA:1.10.10.10 2 82 7.1E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09490 3b32e6cca3f022833d3dff206c16dc1e 338 Pfam PF03466 LysR substrate binding domain 90 295 1.1E-39 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS09490 3b32e6cca3f022833d3dff206c16dc1e 338 SUPERFAMILY SSF46785 12 112 1.58E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09490 3b32e6cca3f022833d3dff206c16dc1e 338 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 1.3E-15 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS09490 3b32e6cca3f022833d3dff206c16dc1e 338 Gene3D G3DSA:3.40.190.10 177 266 2.5E-23 T 26-04-2016 RGE_RS17100 01e1893da97ed922fa0b7a5a81697c7c 444 SUPERFAMILY SSF56954 5 430 2.75E-86 T 26-04-2016 RGE_RS17100 01e1893da97ed922fa0b7a5a81697c7c 444 Pfam PF02321 Outer membrane efflux protein 30 215 5.0E-22 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS17100 01e1893da97ed922fa0b7a5a81697c7c 444 Pfam PF02321 Outer membrane efflux protein 239 428 6.5E-28 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS17100 01e1893da97ed922fa0b7a5a81697c7c 444 Gene3D G3DSA:1.20.1600.10 22 431 4.7E-75 T 26-04-2016 RGE_RS17100 01e1893da97ed922fa0b7a5a81697c7c 444 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 26 442 1.6E-88 T 26-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 RGE_RS17100 01e1893da97ed922fa0b7a5a81697c7c 444 PANTHER PTHR30026 1 442 2.1E-85 T 26-04-2016 RGE_RS17100 01e1893da97ed922fa0b7a5a81697c7c 444 PANTHER PTHR30026:SF3 1 442 2.1E-85 T 26-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 RGE_RS20990 f3c4492e7817d54e2dfdf867d9dee159 114 Pfam PF01521 Iron-sulphur cluster biosynthesis 9 109 6.7E-17 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS20990 f3c4492e7817d54e2dfdf867d9dee159 114 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 2 114 33.524 T 26-04-2016 IPR023063 FeS cluster insertion protein ErpA GO:0016226 RGE_RS20990 f3c4492e7817d54e2dfdf867d9dee159 114 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 9 114 9.2E-36 T 26-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RGE_RS20990 f3c4492e7817d54e2dfdf867d9dee159 114 SUPERFAMILY SSF89360 8 103 7.26E-29 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS20990 f3c4492e7817d54e2dfdf867d9dee159 114 Gene3D G3DSA:2.60.300.12 6 100 8.2E-31 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS20990 f3c4492e7817d54e2dfdf867d9dee159 114 PANTHER PTHR10072 6 114 9.5E-45 T 26-04-2016 RGE_RS20990 f3c4492e7817d54e2dfdf867d9dee159 114 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 95 112 - T 26-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site RGE_RS17090 89f4307c7316f0282116fa16705a95b5 230 Gene3D G3DSA:1.10.10.60 11 54 4.0E-21 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS17090 89f4307c7316f0282116fa16705a95b5 230 Gene3D G3DSA:1.10.357.10 74 209 8.2E-19 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS17090 89f4307c7316f0282116fa16705a95b5 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 1.8E-13 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS17090 89f4307c7316f0282116fa16705a95b5 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 1.8E-13 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS17090 89f4307c7316f0282116fa16705a95b5 230 Gene3D G3DSA:1.10.10.60 55 73 1.6E-7 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS17090 89f4307c7316f0282116fa16705a95b5 230 PANTHER PTHR30055 8 226 2.1E-34 T 26-04-2016 RGE_RS17090 89f4307c7316f0282116fa16705a95b5 230 SUPERFAMILY SSF46689 11 92 1.4E-21 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS17090 89f4307c7316f0282116fa16705a95b5 230 Pfam PF16859 Bacterial transcriptional repressor C-terminal 92 193 8.1E-12 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS17090 89f4307c7316f0282116fa16705a95b5 230 SUPERFAMILY SSF48498 92 209 8.56E-20 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS17090 89f4307c7316f0282116fa16705a95b5 230 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 71 1.5E-20 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS13190 134112687c067c021c088799cc0f701b 559 SUPERFAMILY SSF48452 175 350 5.06E-17 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS13190 134112687c067c021c088799cc0f701b 559 SMART SM00448 10 127 2.7E-4 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS13190 134112687c067c021c088799cc0f701b 559 Gene3D G3DSA:1.25.40.10 143 367 4.2E-20 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS13190 134112687c067c021c088799cc0f701b 559 SUPERFAMILY SSF52172 11 148 2.42E-15 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS13190 134112687c067c021c088799cc0f701b 559 Pfam PF00072 Response regulator receiver domain 13 123 9.2E-10 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS13190 134112687c067c021c088799cc0f701b 559 Gene3D G3DSA:3.40.50.2300 12 139 1.4E-13 T 26-04-2016 RGE_RS13190 134112687c067c021c088799cc0f701b 559 Pfam PF13432 Tetratricopeptide repeat 207 268 3.3E-7 T 26-04-2016 RGE_RS04700 f5b399ff30c8e1e6f8313eadbaa85f0e 262 Pfam PF08478 POTRA domain, FtsQ-type 48 117 1.7E-14 T 26-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type RGE_RS04700 f5b399ff30c8e1e6f8313eadbaa85f0e 262 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 18 250 22.323 T 26-04-2016 IPR026579 Cell division protein FtsQ GO:0000917 RGE_RS04700 f5b399ff30c8e1e6f8313eadbaa85f0e 262 PANTHER PTHR35851:SF1 11 252 4.7E-41 T 26-04-2016 RGE_RS04700 f5b399ff30c8e1e6f8313eadbaa85f0e 262 PANTHER PTHR35851 11 252 4.7E-41 T 26-04-2016 RGE_RS04700 f5b399ff30c8e1e6f8313eadbaa85f0e 262 Pfam PF03799 Cell division protein FtsQ 121 242 6.2E-26 T 26-04-2016 IPR005548 Cell division protein FtsQ/DivIB RGE_RS05035 1540971371d31877793f47a5d75b879e 303 PIRSF PIRSF000728 20 302 1.6E-100 T 26-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS05035 1540971371d31877793f47a5d75b879e 303 Pfam PF00696 Amino acid kinase family 36 279 1.2E-45 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS05035 1540971371d31877793f47a5d75b879e 303 TIGRFAM TIGR00761 argB: acetylglutamate kinase 37 277 1.0E-72 T 26-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS05035 1540971371d31877793f47a5d75b879e 303 PRINTS PR00474 Glutamate 5-kinase family signature 67 81 2.9E-7 T 26-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RGE_RS05035 1540971371d31877793f47a5d75b879e 303 PRINTS PR00474 Glutamate 5-kinase family signature 202 229 2.9E-7 T 26-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RGE_RS05035 1540971371d31877793f47a5d75b879e 303 PRINTS PR00474 Glutamate 5-kinase family signature 252 272 2.9E-7 T 26-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RGE_RS05035 1540971371d31877793f47a5d75b879e 303 Hamap MF_00082_B Acetylglutamate kinase [argB]. 34 302 35.174 T 26-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS05035 1540971371d31877793f47a5d75b879e 303 Gene3D G3DSA:3.40.1160.10 34 301 2.9E-100 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS05035 1540971371d31877793f47a5d75b879e 303 SUPERFAMILY SSF53633 14 302 8.51E-88 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS05035 1540971371d31877793f47a5d75b879e 303 PANTHER PTHR23342 18 301 9.8E-108 T 26-04-2016 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 Pfam PF13432 Tetratricopeptide repeat 95 140 3.3E-4 T 26-04-2016 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 Pfam PF14559 Tetratricopeptide repeat 23 88 7.0E-7 T 26-04-2016 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 SMART SM00028 12 45 370.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 SMART SM00028 46 79 0.059 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 SMART SM00028 80 113 14.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 SMART SM00028 114 147 46.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 SMART SM00028 148 181 1.1 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 SUPERFAMILY SSF48452 16 181 1.64E-28 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 Pfam PF13844 Glycosyl transferase family 41 432 623 1.4E-53 T 26-04-2016 IPR029489 O-GlcNAc transferase, C-terminal UniPathway: UPA00378 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 Pfam PF13844 Glycosyl transferase family 41 271 427 9.0E-45 T 26-04-2016 IPR029489 O-GlcNAc transferase, C-terminal UniPathway: UPA00378 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 Gene3D G3DSA:1.25.40.10 17 183 3.8E-34 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 PANTHER PTHR23083 7 178 7.5E-22 T 26-04-2016 RGE_RS09500 e3a6a895254218d42eb941cc3e59441d 639 SUPERFAMILY SSF53756 427 594 7.85E-7 T 26-04-2016 RGE_RS18660 9e4a2f740f706c49cacf96c480295ad3 443 Gene3D G3DSA:3.30.450.40 10 163 1.4E-4 T 26-04-2016 IPR029016 GAF domain-like RGE_RS18660 9e4a2f740f706c49cacf96c480295ad3 443 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 208 391 1.0E-10 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS18660 9e4a2f740f706c49cacf96c480295ad3 443 Gene3D G3DSA:2.40.50.100 212 242 1.2E-6 T 26-04-2016 RGE_RS18660 9e4a2f740f706c49cacf96c480295ad3 443 Gene3D G3DSA:2.40.50.100 303 336 1.2E-6 T 26-04-2016 RGE_RS18660 9e4a2f740f706c49cacf96c480295ad3 443 SUPERFAMILY SSF111369 201 314 2.88E-6 T 26-04-2016 RGE_RS18660 9e4a2f740f706c49cacf96c480295ad3 443 SUPERFAMILY SSF55781 10 161 8.24E-7 T 26-04-2016 IPR029016 GAF domain-like RGE_RS02855 c09eac183043f30e49a47caab0275111 320 PANTHER PTHR30349:SF1 3 287 3.8E-60 T 26-04-2016 RGE_RS02855 c09eac183043f30e49a47caab0275111 320 PANTHER PTHR30349 3 287 3.8E-60 T 26-04-2016 RGE_RS02855 c09eac183043f30e49a47caab0275111 320 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 315 1.9E-60 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS02855 c09eac183043f30e49a47caab0275111 320 PIRSF PIRSF017082 2 320 1.3E-67 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS02855 c09eac183043f30e49a47caab0275111 320 SUPERFAMILY SSF53850 107 272 7.29E-11 T 26-04-2016 RGE_RS16280 37a0243a832c70e87a6475f28385edbd 513 ProSitePatterns PS00982 Bacterial-type phytoene dehydrogenase signature. 477 497 - T 26-04-2016 IPR008150 Phytoene dehydrogenase, bacterial-type, conserved site RGE_RS16280 37a0243a832c70e87a6475f28385edbd 513 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 23 507 1.0E-181 T 26-04-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 RGE_RS16280 37a0243a832c70e87a6475f28385edbd 513 PANTHER PTHR10668:SF4 23 498 4.3E-110 T 26-04-2016 RGE_RS16280 37a0243a832c70e87a6475f28385edbd 513 PANTHER PTHR10668 23 498 4.3E-110 T 26-04-2016 RGE_RS16280 37a0243a832c70e87a6475f28385edbd 513 SUPERFAMILY SSF51905 24 336 1.62E-73 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16280 37a0243a832c70e87a6475f28385edbd 513 SUPERFAMILY SSF51905 467 499 1.62E-73 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16280 37a0243a832c70e87a6475f28385edbd 513 Gene3D G3DSA:3.50.50.60 218 374 1.0E-37 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16280 37a0243a832c70e87a6475f28385edbd 513 Gene3D G3DSA:3.50.50.60 24 113 1.0E-37 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS16280 37a0243a832c70e87a6475f28385edbd 513 Pfam PF01593 Flavin containing amine oxidoreductase 31 499 4.1E-33 T 26-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RGE_RS04310 e91b6e8e531e21d16cafae6e6553bd28 203 SMART SM00464 4 197 1.1E-4 T 26-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RGE_RS04310 e91b6e8e531e21d16cafae6e6553bd28 203 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 5 191 6.3E-19 T 26-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RGE_RS04310 e91b6e8e531e21d16cafae6e6553bd28 203 SUPERFAMILY SSF88697 5 196 8.2E-39 T 26-04-2016 IPR015947 PUA-like domain RGE_RS08230 c2d92b32c732e3c15ed99a3e54c0daa8 144 PANTHER PTHR22617 6 141 2.1E-33 T 26-04-2016 RGE_RS08230 c2d92b32c732e3c15ed99a3e54c0daa8 144 Gene3D G3DSA:2.30.330.10 54 142 4.9E-39 T 26-04-2016 RGE_RS08230 c2d92b32c732e3c15ed99a3e54c0daa8 144 PRINTS PR00956 Flagellar motor switch protein FliN signature 62 78 9.8E-29 T 26-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RGE_RS08230 c2d92b32c732e3c15ed99a3e54c0daa8 144 PRINTS PR00956 Flagellar motor switch protein FliN signature 108 123 9.8E-29 T 26-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RGE_RS08230 c2d92b32c732e3c15ed99a3e54c0daa8 144 PRINTS PR00956 Flagellar motor switch protein FliN signature 95 108 9.8E-29 T 26-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RGE_RS08230 c2d92b32c732e3c15ed99a3e54c0daa8 144 PRINTS PR00956 Flagellar motor switch protein FliN signature 79 95 9.8E-29 T 26-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RGE_RS08230 c2d92b32c732e3c15ed99a3e54c0daa8 144 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 62 132 2.4E-25 T 26-04-2016 IPR001543 Surface presentation of antigen (SpoA) RGE_RS08230 c2d92b32c732e3c15ed99a3e54c0daa8 144 SUPERFAMILY SSF101801 59 141 6.28E-26 T 26-04-2016 IPR001543 Surface presentation of antigen (SpoA) RGE_RS08230 c2d92b32c732e3c15ed99a3e54c0daa8 144 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 60 134 2.8E-33 T 26-04-2016 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 RGE_RS01735 6ddb02c91de22ef1a6e7d0364de7a10f 134 PIRSF PIRSF002131 3 134 7.1E-50 T 26-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RGE_RS01735 6ddb02c91de22ef1a6e7d0364de7a10f 134 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 134 31.752 T 26-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RGE_RS01735 6ddb02c91de22ef1a6e7d0364de7a10f 134 Gene3D G3DSA:3.30.420.80 12 134 7.8E-51 T 26-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RGE_RS01735 6ddb02c91de22ef1a6e7d0364de7a10f 134 SUPERFAMILY SSF53137 19 134 1.99E-45 T 26-04-2016 RGE_RS01735 6ddb02c91de22ef1a6e7d0364de7a10f 134 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 15 131 3.9E-53 T 26-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01735 6ddb02c91de22ef1a6e7d0364de7a10f 134 Pfam PF00411 Ribosomal protein S11 24 133 2.4E-48 T 26-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RGE_RS01735 6ddb02c91de22ef1a6e7d0364de7a10f 134 PANTHER PTHR11759 16 134 2.4E-63 T 26-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RGE_RS10510 00c3fd5c05bd4070502e947ddbaf6b13 307 PANTHER PTHR22911 4 288 2.0E-45 T 26-04-2016 RGE_RS10510 00c3fd5c05bd4070502e947ddbaf6b13 307 SUPERFAMILY SSF103481 43 142 1.18E-10 T 26-04-2016 RGE_RS10510 00c3fd5c05bd4070502e947ddbaf6b13 307 PANTHER PTHR22911:SF70 4 288 2.0E-45 T 26-04-2016 RGE_RS10510 00c3fd5c05bd4070502e947ddbaf6b13 307 Pfam PF00892 EamA-like transporter family 8 139 3.4E-10 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS10510 00c3fd5c05bd4070502e947ddbaf6b13 307 SUPERFAMILY SSF103481 202 286 1.7E-5 T 26-04-2016 RGE_RS01350 503ed015f30c3a92679a5ea33b7b5004 189 SMART SM00867 23 187 8.5E-57 T 26-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RGE_RS01350 503ed015f30c3a92679a5ea33b7b5004 189 SUPERFAMILY SSF101874 23 189 1.44E-47 T 26-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RGE_RS01350 503ed015f30c3a92679a5ea33b7b5004 189 PANTHER PTHR34406 1 189 1.6E-43 T 26-04-2016 RGE_RS01350 503ed015f30c3a92679a5ea33b7b5004 189 PANTHER PTHR34406:SF1 1 189 1.6E-43 T 26-04-2016 RGE_RS01350 503ed015f30c3a92679a5ea33b7b5004 189 Gene3D G3DSA:2.40.128.110 22 189 2.1E-48 T 26-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RGE_RS01350 503ed015f30c3a92679a5ea33b7b5004 189 Pfam PF04264 YceI-like domain 24 185 1.6E-34 T 26-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RGE_RS19155 e7058568d0e007b20ad8e934279ef746 155 SUPERFAMILY SSF47741 86 154 6.28E-32 T 26-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RGE_RS19155 e7058568d0e007b20ad8e934279ef746 155 SUPERFAMILY SSF54292 2 79 9.18E-25 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS19155 e7058568d0e007b20ad8e934279ef746 155 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 26-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RGE_RS19155 e7058568d0e007b20ad8e934279ef746 155 PANTHER PTHR11908 1 140 3.5E-44 T 26-04-2016 RGE_RS19155 e7058568d0e007b20ad8e934279ef746 155 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 60 1.1E-7 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS19155 e7058568d0e007b20ad8e934279ef746 155 Pfam PF01799 [2Fe-2S] binding domain 74 147 4.4E-30 T 26-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RGE_RS19155 e7058568d0e007b20ad8e934279ef746 155 Gene3D G3DSA:3.10.20.30 3 75 8.7E-30 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS19155 e7058568d0e007b20ad8e934279ef746 155 Gene3D G3DSA:1.10.150.120 76 154 1.7E-35 T 26-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RGE_RS20995 7f35f445b652a4c26cad78ab221ce945 107 SUPERFAMILY SSF89360 1 95 1.9E-28 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS20995 7f35f445b652a4c26cad78ab221ce945 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 26-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site RGE_RS20995 7f35f445b652a4c26cad78ab221ce945 107 PANTHER PTHR10072 1 107 9.9E-41 T 26-04-2016 RGE_RS20995 7f35f445b652a4c26cad78ab221ce945 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 1.2E-33 T 26-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RGE_RS20995 7f35f445b652a4c26cad78ab221ce945 107 PANTHER PTHR10072:SF48 1 107 9.9E-41 T 26-04-2016 IPR031108 FeS assembly protein IscA-like GO:0005198|GO:0016226|GO:0051536 RGE_RS20995 7f35f445b652a4c26cad78ab221ce945 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 7.7E-22 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS20995 7f35f445b652a4c26cad78ab221ce945 107 Gene3D G3DSA:2.60.300.12 2 95 2.3E-30 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS17315 55a47e7ed7ad9a9ef1fa2ea05f471e6a 301 Gene3D G3DSA:3.60.40.10 2 241 3.6E-56 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS17315 55a47e7ed7ad9a9ef1fa2ea05f471e6a 301 PANTHER PTHR13832:SF278 2 261 2.7E-38 T 26-04-2016 RGE_RS17315 55a47e7ed7ad9a9ef1fa2ea05f471e6a 301 SUPERFAMILY SSF81606 1 241 4.32E-53 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS17315 55a47e7ed7ad9a9ef1fa2ea05f471e6a 301 SMART SM00331 3 241 8.9E-16 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS17315 55a47e7ed7ad9a9ef1fa2ea05f471e6a 301 Pfam PF13672 Protein phosphatase 2C 11 199 4.1E-14 T 26-04-2016 RGE_RS17315 55a47e7ed7ad9a9ef1fa2ea05f471e6a 301 PANTHER PTHR13832 2 261 2.7E-38 T 26-04-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 RGE_RS17315 55a47e7ed7ad9a9ef1fa2ea05f471e6a 301 SMART SM00332 1 239 5.7E-19 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 Pfam PF04539 Sigma-70 region 3 575 651 5.9E-24 T 26-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 PRINTS PR00046 Major sigma-70 factor signature 544 552 1.3E-30 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 PRINTS PR00046 Major sigma-70 factor signature 689 704 1.3E-30 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 PRINTS PR00046 Major sigma-70 factor signature 520 533 1.3E-30 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 PRINTS PR00046 Major sigma-70 factor signature 668 680 1.3E-30 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 PRINTS PR00046 Major sigma-70 factor signature 704 715 1.3E-30 T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 Pfam PF04545 Sigma-70, region 4 665 717 2.7E-18 T 26-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 492 717 4.8E-41 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 SUPERFAMILY SSF88659 626 728 1.31E-27 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 Gene3D G3DSA:1.10.601.10 235 565 5.5E-125 T 26-04-2016 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 Pfam PF03979 Sigma-70 factor, region 1.1 125 203 1.3E-25 T 26-04-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 520 533 - T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 117 729 42.537 T 26-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 Pfam PF04542 Sigma-70 region 2 496 565 2.2E-21 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 Pfam PF04546 Sigma-70, non-essential region 263 465 5.6E-67 T 26-04-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 Pfam PF00140 Sigma-70 factor, region 1.2 221 254 1.5E-13 T 26-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 PANTHER PTHR30603:SF0 443 731 2.0E-223 T 26-04-2016 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 PANTHER PTHR30603:SF0 120 275 2.0E-223 T 26-04-2016 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 PANTHER PTHR30603 443 731 2.0E-223 T 26-04-2016 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 PANTHER PTHR30603 120 275 2.0E-223 T 26-04-2016 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 492 728 2.2E-118 T 26-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 SUPERFAMILY SSF88946 238 563 4.4E-102 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 Gene3D G3DSA:1.10.10.10 658 729 2.1E-32 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 Gene3D G3DSA:1.10.10.10 569 620 1.8E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 SUPERFAMILY SSF88659 569 642 1.31E-17 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13150 8150a573773fae14ae416c6fb83ac54a 731 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 689 715 - T 26-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20950 2a83008c76dad94ea87136b8eaa62815 159 PIRSF PIRSF005788 1 157 4.7E-67 T 26-04-2016 IPR004952 Uncharacterised protein family UPF0460 RGE_RS20950 2a83008c76dad94ea87136b8eaa62815 159 Pfam PF03270 Protein of unknown function, DUF269 36 155 9.7E-51 T 26-04-2016 IPR004952 Uncharacterised protein family UPF0460 RGE_RS20950 2a83008c76dad94ea87136b8eaa62815 159 TIGRFAM TIGR02935 TIGR02935: probable nitrogen fixation protein 17 155 1.5E-64 T 26-04-2016 IPR004952 Uncharacterised protein family UPF0460 RGE_RS21900 38f8ba77c758e9c4d0cdf812c177ffc3 266 Gene3D G3DSA:3.60.110.10 1 265 5.9E-86 T 26-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RGE_RS21900 38f8ba77c758e9c4d0cdf812c177ffc3 266 PANTHER PTHR23088 1 265 9.5E-93 T 26-04-2016 RGE_RS21900 38f8ba77c758e9c4d0cdf812c177ffc3 266 Pfam PF00795 Carbon-nitrogen hydrolase 2 255 5.2E-56 T 26-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RGE_RS21900 38f8ba77c758e9c4d0cdf812c177ffc3 266 SUPERFAMILY SSF56317 1 264 1.01E-80 T 26-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RGE_RS21900 38f8ba77c758e9c4d0cdf812c177ffc3 266 PANTHER PTHR23088:SF27 1 265 9.5E-93 T 26-04-2016 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 Pfam PF13416 Bacterial extracellular solute-binding protein 42 330 5.7E-29 T 26-04-2016 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 Gene3D G3DSA:3.40.190.10 147 315 3.4E-62 T 26-04-2016 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PIRSF PIRSF019574 1 366 3.7E-128 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PANTHER PTHR30222 4 365 1.5E-123 T 26-04-2016 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PANTHER PTHR30222:SF11 4 365 1.5E-123 T 26-04-2016 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 SUPERFAMILY SSF53850 25 365 7.25E-90 T 26-04-2016 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 155 169 1.6E-52 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 90 103 1.6E-52 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 310 336 1.6E-52 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 74 88 1.6E-52 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 178 197 1.6E-52 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 123 139 1.6E-52 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 47 68 1.6E-52 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 215 234 1.6E-52 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 265 284 1.6E-52 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 31 47 1.6E-52 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS12775 58d7884d34f28f2b02747682d5b2e3d0 366 Gene3D G3DSA:3.40.190.10 28 146 1.5E-11 T 26-04-2016 RGE_RS21715 b9ade4a71173174f83a16f11f175d346 518 SMART SM01049 34 131 1.6E-24 T 26-04-2016 IPR033480 Single Cache domain 2 RGE_RS21715 b9ade4a71173174f83a16f11f175d346 518 PANTHER PTHR32089:SF63 182 518 9.0E-124 T 26-04-2016 RGE_RS21715 b9ade4a71173174f83a16f11f175d346 518 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 516 4.0E-58 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS21715 b9ade4a71173174f83a16f11f175d346 518 SMART SM00283 270 517 1.8E-87 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS21715 b9ade4a71173174f83a16f11f175d346 518 SUPERFAMILY SSF58104 241 518 2.62E-67 T 26-04-2016 RGE_RS21715 b9ade4a71173174f83a16f11f175d346 518 Gene3D G3DSA:1.10.287.950 288 489 1.7E-57 T 26-04-2016 RGE_RS21715 b9ade4a71173174f83a16f11f175d346 518 Pfam PF17200 Single Cache domain 2 37 192 1.3E-30 T 26-04-2016 IPR033480 Single Cache domain 2 RGE_RS21715 b9ade4a71173174f83a16f11f175d346 518 Gene3D G3DSA:3.30.450.20 22 185 1.9E-37 T 26-04-2016 RGE_RS21715 b9ade4a71173174f83a16f11f175d346 518 PANTHER PTHR32089 182 518 9.0E-124 T 26-04-2016 RGE_RS16050 5bc1f6b17269473c95dcc103d95b9e69 654 PANTHER PTHR30217:SF10 1 635 1.0E-187 T 26-04-2016 RGE_RS16050 5bc1f6b17269473c95dcc103d95b9e69 654 ProSitePatterns PS01276 Peptidase family U32 signature. 159 177 - T 26-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS16050 5bc1f6b17269473c95dcc103d95b9e69 654 PANTHER PTHR30217 1 635 1.0E-187 T 26-04-2016 RGE_RS16050 5bc1f6b17269473c95dcc103d95b9e69 654 Pfam PF01136 Peptidase family U32 75 303 1.3E-66 T 26-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS16050 5bc1f6b17269473c95dcc103d95b9e69 654 Pfam PF12392 Collagenase 394 504 1.2E-18 T 26-04-2016 IPR020988 Peptidase U32, collagenase KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS02145 865efcf3e2e909e6c1ee474ce6d8674e 436 Gene3D G3DSA:3.40.50.2000 175 363 4.8E-24 T 26-04-2016 RGE_RS02145 865efcf3e2e909e6c1ee474ce6d8674e 436 SUPERFAMILY SSF53756 2 380 4.19E-65 T 26-04-2016 RGE_RS02145 865efcf3e2e909e6c1ee474ce6d8674e 436 Pfam PF13692 Glycosyl transferases group 1 209 350 2.8E-22 T 26-04-2016 RGE_RS02145 865efcf3e2e909e6c1ee474ce6d8674e 436 Pfam PF13439 Glycosyltransferase Family 4 14 183 5.3E-17 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS02145 865efcf3e2e909e6c1ee474ce6d8674e 436 PANTHER PTHR12526 14 381 1.1E-47 T 26-04-2016 RGE_RS12200 4d0456b3d163f2b1bef06e08f22ab76b 295 Pfam PF08212 Lipocalin-like domain 148 291 2.1E-36 T 26-04-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain RGE_RS12200 4d0456b3d163f2b1bef06e08f22ab76b 295 Gene3D G3DSA:2.40.128.20 120 291 3.8E-36 T 26-04-2016 IPR012674 Calycin RGE_RS12200 4d0456b3d163f2b1bef06e08f22ab76b 295 SUPERFAMILY SSF50814 140 289 1.37E-32 T 26-04-2016 IPR011038 Calycin-like RGE_RS12200 4d0456b3d163f2b1bef06e08f22ab76b 295 PRINTS PR01171 Bacterial lipocalin signature 241 249 3.5E-7 T 26-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 RGE_RS12200 4d0456b3d163f2b1bef06e08f22ab76b 295 PRINTS PR01171 Bacterial lipocalin signature 148 162 3.5E-7 T 26-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 RGE_RS12200 4d0456b3d163f2b1bef06e08f22ab76b 295 PRINTS PR01171 Bacterial lipocalin signature 256 267 3.5E-7 T 26-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 RGE_RS12200 4d0456b3d163f2b1bef06e08f22ab76b 295 PANTHER PTHR10612 140 291 6.8E-29 T 26-04-2016 RGE_RS16815 20e30429471fddbacf2cfdfc25feac38 200 PANTHER PTHR19136:SF78 8 195 2.2E-25 T 26-04-2016 RGE_RS16815 20e30429471fddbacf2cfdfc25feac38 200 Gene3D G3DSA:3.90.550.10 3 196 9.7E-32 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS16815 20e30429471fddbacf2cfdfc25feac38 200 SUPERFAMILY SSF53448 6 187 2.93E-24 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS16815 20e30429471fddbacf2cfdfc25feac38 200 PANTHER PTHR19136 8 195 2.2E-25 T 26-04-2016 RGE_RS16815 20e30429471fddbacf2cfdfc25feac38 200 Pfam PF12804 MobA-like NTP transferase domain 8 167 1.2E-32 T 26-04-2016 IPR025877 MobA-like NTP transferase RGE_RS03265 0d7bad324a172362b48134c632d4d744 395 Pfam PF02239 Cytochrome D1 heme domain 30 389 1.3E-101 T 26-04-2016 RGE_RS03265 0d7bad324a172362b48134c632d4d744 395 Gene3D G3DSA:2.140.10.20 125 386 6.3E-37 T 26-04-2016 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain RGE_RS03265 0d7bad324a172362b48134c632d4d744 395 SUPERFAMILY SSF51004 18 392 1.7E-71 T 26-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 SMART SM00889 485 604 5.6E-74 T 26-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 26-04-2016 IPR031157 Tr-type G domain, conserved site RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 Pfam PF03764 Elongation factor G, domain IV 484 604 1.0E-47 T 26-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 Gene3D G3DSA:2.40.30.10 310 410 1.7E-37 T 26-04-2016 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 Gene3D G3DSA:3.40.50.300 6 293 1.8E-102 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 4.2E-65 T 26-04-2016 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 698 0.0 T 26-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 SUPERFAMILY SSF52540 6 288 8.24E-106 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 SUPERFAMILY SSF54980 609 696 7.19E-30 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 PANTHER PTHR23115 308 698 0.0 T 26-04-2016 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 PANTHER PTHR23115 6 184 0.0 T 26-04-2016 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 PANTHER PTHR23115 261 289 0.0 T 26-04-2016 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 PANTHER PTHR23115:SF66 308 698 0.0 T 26-04-2016 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 PANTHER PTHR23115:SF66 6 184 0.0 T 26-04-2016 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 PANTHER PTHR23115:SF66 261 289 0.0 T 26-04-2016 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 Gene3D G3DSA:3.30.70.240 605 692 8.7E-35 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 Hamap MF_00054_B Elongation factor G [fusA]. 6 698 110.237 T 26-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 Gene3D G3DSA:3.30.230.10 489 604 7.9E-51 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 186 2.9E-31 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 SUPERFAMILY SSF50447 271 407 1.57E-35 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 SUPERFAMILY SSF54980 409 486 4.32E-25 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 Pfam PF14492 Elongation Factor G, domain II 409 483 9.2E-35 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 SUPERFAMILY SSF54211 484 605 4.05E-44 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 PRINTS PR00315 GTP-binding elongation factor signature 85 95 4.3E-15 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 PRINTS PR00315 GTP-binding elongation factor signature 137 146 4.3E-15 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.3E-15 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 PRINTS PR00315 GTP-binding elongation factor signature 12 25 4.3E-15 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 PRINTS PR00315 GTP-binding elongation factor signature 101 112 4.3E-15 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 Pfam PF03144 Elongation factor Tu domain 2 329 396 6.6E-18 T 26-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 Gene3D G3DSA:3.30.70.870 411 485 4.7E-39 T 26-04-2016 RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 Pfam PF00679 Elongation factor G C-terminus 606 693 1.5E-31 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS01595 ceb2cb4e08610c16ebd5de7daee82cdf 701 SMART SM00838 606 694 2.9E-55 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS02325 9ad2b359678c1f1966166350e2ed5c9f 321 Gene3D G3DSA:3.40.50.1110 70 308 3.9E-21 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS02325 9ad2b359678c1f1966166350e2ed5c9f 321 SUPERFAMILY SSF52266 288 312 1.94E-9 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS02325 9ad2b359678c1f1966166350e2ed5c9f 321 SUPERFAMILY SSF52266 83 228 1.94E-9 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS05460 ea8d30446f8913d8546b26af6ef3b351 262 PANTHER PTHR10953:SF159 13 168 1.1E-63 T 26-04-2016 RGE_RS05460 ea8d30446f8913d8546b26af6ef3b351 262 Pfam PF00899 ThiF family 23 254 2.5E-32 T 26-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RGE_RS05460 ea8d30446f8913d8546b26af6ef3b351 262 PANTHER PTHR10953:SF159 197 255 1.1E-63 T 26-04-2016 RGE_RS05460 ea8d30446f8913d8546b26af6ef3b351 262 SUPERFAMILY SSF69572 13 253 1.96E-51 T 26-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RGE_RS05460 ea8d30446f8913d8546b26af6ef3b351 262 PANTHER PTHR10953 197 255 1.1E-63 T 26-04-2016 RGE_RS05460 ea8d30446f8913d8546b26af6ef3b351 262 PANTHER PTHR10953 13 168 1.1E-63 T 26-04-2016 RGE_RS05460 ea8d30446f8913d8546b26af6ef3b351 262 Gene3D G3DSA:3.40.50.720 11 193 3.2E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05460 ea8d30446f8913d8546b26af6ef3b351 262 Gene3D G3DSA:3.40.50.720 231 257 3.2E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS18370 ebb4e3994d4e144add7ff0d3056a977d 360 Pfam PF00005 ABC transporter 22 167 2.8E-33 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS18370 ebb4e3994d4e144add7ff0d3056a977d 360 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS18370 ebb4e3994d4e144add7ff0d3056a977d 360 PANTHER PTHR24220 4 249 4.2E-114 T 26-04-2016 RGE_RS18370 ebb4e3994d4e144add7ff0d3056a977d 360 Gene3D G3DSA:3.40.50.300 2 240 2.8E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18370 ebb4e3994d4e144add7ff0d3056a977d 360 SUPERFAMILY SSF50331 268 355 4.68E-10 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS18370 ebb4e3994d4e144add7ff0d3056a977d 360 SUPERFAMILY SSF52540 3 242 1.27E-77 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18370 ebb4e3994d4e144add7ff0d3056a977d 360 PANTHER PTHR24220:SF282 4 249 4.2E-114 T 26-04-2016 RGE_RS18370 ebb4e3994d4e144add7ff0d3056a977d 360 SMART SM00382 30 217 1.3E-13 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS18370 ebb4e3994d4e144add7ff0d3056a977d 360 Pfam PF08402 TOBE domain 286 354 2.3E-6 T 26-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RGE_RS14845 15be77e779f955c391aaae5f695f615e 809 Pfam PF07715 TonB-dependent Receptor Plug Domain 169 271 1.1E-13 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14845 15be77e779f955c391aaae5f695f615e 809 Gene3D G3DSA:2.170.130.10 157 279 3.4E-28 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14845 15be77e779f955c391aaae5f695f615e 809 PANTHER PTHR32552 161 809 3.4E-144 T 26-04-2016 RGE_RS14845 15be77e779f955c391aaae5f695f615e 809 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 171 807 2.5E-90 T 26-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 RGE_RS14845 15be77e779f955c391aaae5f695f615e 809 SUPERFAMILY SSF56935 162 809 2.44E-113 T 26-04-2016 RGE_RS14845 15be77e779f955c391aaae5f695f615e 809 Pfam PF07660 Secretin and TonB N terminus short domain 72 115 2.0E-8 T 26-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RGE_RS14845 15be77e779f955c391aaae5f695f615e 809 PANTHER PTHR32552:SF37 161 809 3.4E-144 T 26-04-2016 RGE_RS14845 15be77e779f955c391aaae5f695f615e 809 Gene3D G3DSA:2.40.170.20 280 808 5.3E-110 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14845 15be77e779f955c391aaae5f695f615e 809 Pfam PF00593 TonB dependent receptor 578 808 1.4E-29 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14845 15be77e779f955c391aaae5f695f615e 809 SMART SM00965 72 123 7.6E-13 T 26-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RGE_RS18560 eaa3775b818007c044d535694d8bd3be 711 Pfam PF00563 EAL domain 451 682 3.1E-57 T 26-04-2016 IPR001633 EAL domain RGE_RS18560 eaa3775b818007c044d535694d8bd3be 711 Pfam PF02378 Phosphotransferase system, EIIC 26 340 4.2E-11 T 26-04-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RGE_RS18560 eaa3775b818007c044d535694d8bd3be 711 SUPERFAMILY SSF141868 449 697 1.02E-68 T 26-04-2016 IPR001633 EAL domain RGE_RS18560 eaa3775b818007c044d535694d8bd3be 711 PANTHER PTHR33121:SF13 400 711 1.9E-58 T 26-04-2016 RGE_RS18560 eaa3775b818007c044d535694d8bd3be 711 Gene3D G3DSA:3.20.20.450 449 693 2.2E-74 T 26-04-2016 IPR001633 EAL domain RGE_RS18560 eaa3775b818007c044d535694d8bd3be 711 SMART SM00052 439 688 3.1E-74 T 26-04-2016 IPR001633 EAL domain RGE_RS18560 eaa3775b818007c044d535694d8bd3be 711 PANTHER PTHR33121 400 711 1.9E-58 T 26-04-2016 RGE_RS00545 aa9425762d92f8df79a4fd2a182a0f23 215 SUPERFAMILY SSF101327 14 175 2.62E-12 T 26-04-2016 IPR011978 Uncharacterised protein family UPF0149 RGE_RS00545 aa9425762d92f8df79a4fd2a182a0f23 215 Pfam PF03695 Uncharacterised protein family (UPF0149) 13 184 3.4E-21 T 26-04-2016 IPR011978 Uncharacterised protein family UPF0149 RGE_RS00545 aa9425762d92f8df79a4fd2a182a0f23 215 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 11 178 1.8E-16 T 26-04-2016 IPR011978 Uncharacterised protein family UPF0149 RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 PANTHER PTHR24423 86 440 4.2E-87 T 26-04-2016 RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 SUPERFAMILY SSF52172 328 440 5.55E-28 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 SMART SM00448 328 440 3.4E-28 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 Pfam PF00512 His Kinase A (phospho-acceptor) domain 99 152 1.6E-9 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 SMART SM00388 98 158 9.1E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 Pfam PF00072 Response regulator receiver domain 330 440 6.5E-19 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 SMART SM00387 204 319 2.3E-33 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 SUPERFAMILY SSF47384 86 156 3.14E-12 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 SUPERFAMILY SSF55874 147 319 1.44E-38 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 Gene3D G3DSA:3.30.565.10 160 322 3.4E-39 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 Gene3D G3DSA:1.10.287.130 89 150 2.3E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 278 296 1.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 303 316 1.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 PRINTS PR00344 Bacterial sensor protein C-terminal signature 243 257 1.9E-14 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 Gene3D G3DSA:3.40.50.2300 323 440 6.8E-27 T 26-04-2016 RGE_RS17795 095b342c8064b3048b8f94785066a70f 442 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 205 317 3.8E-22 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS14975 1281861cc2c38b1b66a4b7adc1cf75ed 261 Gene3D G3DSA:3.20.20.10 16 250 8.7E-88 T 26-04-2016 IPR029066 PLP-binding barrel RGE_RS14975 1281861cc2c38b1b66a4b7adc1cf75ed 261 Pfam PF01168 Alanine racemase, N-terminal domain 25 248 5.1E-22 T 26-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS14975 1281861cc2c38b1b66a4b7adc1cf75ed 261 SUPERFAMILY SSF51419 16 246 3.66E-72 T 26-04-2016 IPR029066 PLP-binding barrel RGE_RS14975 1281861cc2c38b1b66a4b7adc1cf75ed 261 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 23 248 6.3E-54 T 26-04-2016 IPR011078 Uncharacterised protein family UPF0001 RGE_RS14975 1281861cc2c38b1b66a4b7adc1cf75ed 261 PIRSF PIRSF004848 14 253 9.1E-66 T 26-04-2016 IPR011078 Uncharacterised protein family UPF0001 RGE_RS14975 1281861cc2c38b1b66a4b7adc1cf75ed 261 PANTHER PTHR10146 5 252 3.4E-88 T 26-04-2016 IPR011078 Uncharacterised protein family UPF0001 RGE_RS21360 7d98a5687d8b02fbff4fdef252e2920d 496 Gene3D G3DSA:3.40.50.1580 178 477 1.3E-115 T 26-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RGE_RS21360 7d98a5687d8b02fbff4fdef252e2920d 496 SUPERFAMILY SSF53167 14 496 1.41E-148 T 26-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RGE_RS21360 7d98a5687d8b02fbff4fdef252e2920d 496 Gene3D G3DSA:3.30.1730.10 9 174 1.4E-58 T 26-04-2016 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 RGE_RS21360 7d98a5687d8b02fbff4fdef252e2920d 496 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 16 496 7.6E-199 T 26-04-2016 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 RGE_RS21360 7d98a5687d8b02fbff4fdef252e2920d 496 Hamap MF_01932 AMP nucleosidase [amn]. 8 496 63.73 T 26-04-2016 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 RGE_RS21360 7d98a5687d8b02fbff4fdef252e2920d 496 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 17 171 2.9E-53 T 26-04-2016 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 RGE_RS21360 7d98a5687d8b02fbff4fdef252e2920d 496 PANTHER PTHR21234 255 496 4.0E-118 T 26-04-2016 IPR018017 Nucleoside phosphorylase RGE_RS21360 7d98a5687d8b02fbff4fdef252e2920d 496 PANTHER PTHR21234 184 229 4.0E-118 T 26-04-2016 IPR018017 Nucleoside phosphorylase RGE_RS21360 7d98a5687d8b02fbff4fdef252e2920d 496 PANTHER PTHR21234:SF11 255 496 4.0E-118 T 26-04-2016 RGE_RS21360 7d98a5687d8b02fbff4fdef252e2920d 496 PANTHER PTHR21234:SF11 184 229 4.0E-118 T 26-04-2016 RGE_RS21360 7d98a5687d8b02fbff4fdef252e2920d 496 Pfam PF01048 Phosphorylase superfamily 278 441 3.6E-12 T 26-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 SUPERFAMILY SSF55874 383 565 1.57E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 Pfam PF01627 Hpt domain 6 98 2.6E-19 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 SMART SM00260 559 691 1.8E-24 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 Gene3D G3DSA:2.40.50.180 599 646 7.3E-12 T 26-04-2016 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 SUPERFAMILY SSF47226 2 127 3.01E-29 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 SMART SM00387 426 567 3.8E-23 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 Gene3D G3DSA:2.30.30.40 567 588 1.2E-18 T 26-04-2016 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 Gene3D G3DSA:2.30.30.40 647 690 1.2E-18 T 26-04-2016 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 322 378 6.7E-11 T 26-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 Gene3D G3DSA:1.10.287.560 322 382 1.2E-14 T 26-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 SUPERFAMILY SSF160246 255 314 2.35E-5 T 26-04-2016 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 Pfam PF01584 CheW-like domain 573 691 1.6E-19 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 SMART SM01231 321 381 8.6E-14 T 26-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 485 2.2E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 521 2.2E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 545 2.2E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 551 564 2.2E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 SUPERFAMILY SSF50341 566 690 3.66E-26 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 429 566 2.9E-17 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 SUPERFAMILY SSF47384 322 382 1.77E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 Gene3D G3DSA:1.20.120.160 2 145 1.1E-37 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 SMART SM00073 3 100 3.9E-25 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 Gene3D G3DSA:3.30.565.10 383 566 9.7E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 PANTHER PTHR22617:SF20 1 707 3.7E-214 T 26-04-2016 RGE_RS18290 09073e98cf6164bba9dabdcbe9150d57 716 PANTHER PTHR22617 1 707 3.7E-214 T 26-04-2016 RGE_RS08650 a51d2207755daef34a6c4b952d99fd47 567 PANTHER PTHR34220 2 566 1.3E-229 T 26-04-2016 RGE_RS08650 a51d2207755daef34a6c4b952d99fd47 567 SUPERFAMILY SSF55874 430 561 7.17E-12 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS08650 a51d2207755daef34a6c4b952d99fd47 567 Pfam PF07694 5TMR of 5TMR-LYT 30 197 2.3E-43 T 26-04-2016 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 RGE_RS08650 a51d2207755daef34a6c4b952d99fd47 567 Pfam PF06580 Histidine kinase 375 452 3.4E-24 T 26-04-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 RGE_RS08650 a51d2207755daef34a6c4b952d99fd47 567 SUPERFAMILY SSF55781 236 359 7.06E-7 T 26-04-2016 IPR029016 GAF domain-like RGE_RS08650 a51d2207755daef34a6c4b952d99fd47 567 SMART SM00065 231 369 0.0013 T 26-04-2016 IPR003018 GAF domain GO:0005515 RGE_RS08650 a51d2207755daef34a6c4b952d99fd47 567 PANTHER PTHR34220:SF3 2 566 1.3E-229 T 26-04-2016 RGE_RS08650 a51d2207755daef34a6c4b952d99fd47 567 Pfam PF13492 GAF domain 249 360 2.4E-6 T 26-04-2016 IPR003018 GAF domain GO:0005515 RGE_RS08650 a51d2207755daef34a6c4b952d99fd47 567 Gene3D G3DSA:3.30.565.10 429 564 2.7E-10 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 PANTHER PTHR30381 1 368 3.4E-187 T 26-04-2016 RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 PANTHER PTHR30381:SF1 1 368 3.4E-187 T 26-04-2016 RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 Hamap MF_00416 Flagellar P-ring protein [flgI]. 5 368 37.626 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 Pfam PF02119 Flagellar P-ring protein 25 367 1.7E-136 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 PRINTS PR01010 Flagellar P-ring protein signature 40 55 6.1E-82 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 PRINTS PR01010 Flagellar P-ring protein signature 25 40 6.1E-82 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 PRINTS PR01010 Flagellar P-ring protein signature 86 105 6.1E-82 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 PRINTS PR01010 Flagellar P-ring protein signature 60 75 6.1E-82 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 PRINTS PR01010 Flagellar P-ring protein signature 255 267 6.1E-82 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 PRINTS PR01010 Flagellar P-ring protein signature 108 125 6.1E-82 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 PRINTS PR01010 Flagellar P-ring protein signature 165 183 6.1E-82 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 PRINTS PR01010 Flagellar P-ring protein signature 125 143 6.1E-82 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS08525 3d04dde19b39d4d5d9c3f46692da374f 368 PRINTS PR01010 Flagellar P-ring protein signature 191 209 6.1E-82 T 26-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RGE_RS10040 84e7d5d67c3421c905526a716d67865b 456 Gene3D G3DSA:3.40.640.10 44 291 7.4E-35 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS10040 84e7d5d67c3421c905526a716d67865b 456 Hamap MF_00544 Tryptophanase [tnaA]. 1 454 96.945 T 26-04-2016 IPR013440 Tryptophanase GO:0006568|GO:0009034 KEGG: 00380+4.1.99.1|UniPathway: UPA00332 RGE_RS10040 84e7d5d67c3421c905526a716d67865b 456 Pfam PF01212 Beta-eliminating lyase 46 419 6.9E-85 T 26-04-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 RGE_RS10040 84e7d5d67c3421c905526a716d67865b 456 ProSitePatterns PS00853 Beta-eliminating lyases pyridoxal-phosphate attachment site. 246 264 - T 26-04-2016 IPR018176 Tryptophanase, conserved site KEGG: 00380+4.1.99.1|UniPathway: UPA00332 RGE_RS10040 84e7d5d67c3421c905526a716d67865b 456 SUPERFAMILY SSF53383 2 453 7.58E-128 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS10040 84e7d5d67c3421c905526a716d67865b 456 PIRSF PIRSF001386 1 455 2.4E-197 T 26-04-2016 IPR011166 Beta-eliminating lyase family GO:0009072|GO:0016830 KEGG: 00380+4.1.99.1|UniPathway: UPA00332 RGE_RS10040 84e7d5d67c3421c905526a716d67865b 456 PANTHER PTHR32325 1 456 9.6E-166 T 26-04-2016 RGE_RS10040 84e7d5d67c3421c905526a716d67865b 456 Gene3D G3DSA:3.90.1150.10 292 452 3.4E-56 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS03455 8cfaef526b05389be5b7da00cf0a3327 172 SUPERFAMILY SSF50341 24 165 7.06E-36 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS03455 8cfaef526b05389be5b7da00cf0a3327 172 SMART SM00260 20 161 1.3E-35 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS03455 8cfaef526b05389be5b7da00cf0a3327 172 Pfam PF01584 CheW-like domain 24 164 7.5E-35 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS03455 8cfaef526b05389be5b7da00cf0a3327 172 Gene3D G3DSA:2.40.50.180 62 108 8.5E-9 T 26-04-2016 RGE_RS03455 8cfaef526b05389be5b7da00cf0a3327 172 PANTHER PTHR22617 24 171 2.1E-43 T 26-04-2016 RGE_RS07460 b520e18d3b4bd9c9ed4742f0ca05f932 259 Gene3D G3DSA:2.160.10.10 59 188 1.9E-34 T 26-04-2016 RGE_RS07460 b520e18d3b4bd9c9ed4742f0ca05f932 259 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 167 1.4E-71 T 26-04-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 RGE_RS07460 b520e18d3b4bd9c9ed4742f0ca05f932 259 Gene3D G3DSA:1.10.3130.10 1 58 1.0E-27 T 26-04-2016 RGE_RS07460 b520e18d3b4bd9c9ed4742f0ca05f932 259 SUPERFAMILY SSF51161 2 169 7.21E-53 T 26-04-2016 IPR011004 Trimeric LpxA-like RGE_RS07460 b520e18d3b4bd9c9ed4742f0ca05f932 259 PANTHER PTHR23416 1 237 3.6E-90 T 26-04-2016 RGE_RS07460 b520e18d3b4bd9c9ed4742f0ca05f932 259 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 71 108 0.0012 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS07460 b520e18d3b4bd9c9ed4742f0ca05f932 259 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 151 2.1E-5 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS07460 b520e18d3b4bd9c9ed4742f0ca05f932 259 PANTHER PTHR23416:SF55 1 237 3.6E-90 T 26-04-2016 RGE_RS17455 c7d17f1f2fa58a99f97b5da730d14f0c 69 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 1 57 2.8E-16 T 26-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 RGE_RS17455 c7d17f1f2fa58a99f97b5da730d14f0c 69 PANTHER PTHR36924:SF1 1 54 2.0E-12 T 26-04-2016 RGE_RS17455 c7d17f1f2fa58a99f97b5da730d14f0c 69 SUPERFAMILY SSF47413 1 61 2.19E-15 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS17455 c7d17f1f2fa58a99f97b5da730d14f0c 69 Pfam PF01381 Helix-turn-helix 1 43 4.8E-7 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS17455 c7d17f1f2fa58a99f97b5da730d14f0c 69 PANTHER PTHR36924 1 54 2.0E-12 T 26-04-2016 RGE_RS17455 c7d17f1f2fa58a99f97b5da730d14f0c 69 Gene3D G3DSA:1.10.260.40 1 62 5.0E-19 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 SUPERFAMILY SSF52540 29 309 3.04E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 SUPERFAMILY SSF52540 347 601 8.98E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 ProSitePatterns PS00211 ABC transporters family signature. 502 516 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 231 295 5.0E-17 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 582 608 0.019 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 PANTHER PTHR24220 374 487 6.2E-147 T 26-04-2016 RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 PANTHER PTHR24220 3 284 6.2E-147 T 26-04-2016 RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 Gene3D G3DSA:3.40.50.300 346 603 1.6E-76 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 Gene3D G3DSA:3.40.50.300 2 253 7.1E-69 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 229 314 1.4E-22 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 PANTHER PTHR24220:SF574 374 487 6.2E-147 T 26-04-2016 RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 PANTHER PTHR24220:SF574 3 284 6.2E-147 T 26-04-2016 RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 Pfam PF00005 ABC transporter 376 530 6.8E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 Pfam PF00005 ABC transporter 22 179 6.9E-26 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 SMART SM00382 30 229 2.5E-14 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS15610 bc5d0732f4ac59dcb4f3208044907834 611 SMART SM00382 383 579 6.8E-18 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS17500 7fe487e5db8fe7eefd3109681c7970b0 313 PANTHER PTHR30134 178 275 3.1E-117 T 26-04-2016 RGE_RS17500 7fe487e5db8fe7eefd3109681c7970b0 313 PANTHER PTHR30134 8 156 3.1E-117 T 26-04-2016 RGE_RS17500 7fe487e5db8fe7eefd3109681c7970b0 313 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 73 259 2.0E-37 T 26-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RGE_RS17500 7fe487e5db8fe7eefd3109681c7970b0 313 PANTHER PTHR30134:SF2 178 275 3.1E-117 T 26-04-2016 RGE_RS17500 7fe487e5db8fe7eefd3109681c7970b0 313 PANTHER PTHR30134:SF2 8 156 3.1E-117 T 26-04-2016 RGE_RS17500 7fe487e5db8fe7eefd3109681c7970b0 313 Gene3D G3DSA:3.40.50.300 225 288 5.6E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17500 7fe487e5db8fe7eefd3109681c7970b0 313 Gene3D G3DSA:3.40.50.300 73 125 5.2E-6 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17500 7fe487e5db8fe7eefd3109681c7970b0 313 Gene3D G3DSA:3.40.50.300 173 211 5.2E-6 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17500 7fe487e5db8fe7eefd3109681c7970b0 313 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 45 276 2.3E-79 T 26-04-2016 IPR004392 Hydrogenase accessory protein HypB GO:0006461|GO:0016151 RGE_RS17500 7fe487e5db8fe7eefd3109681c7970b0 313 SUPERFAMILY SSF52540 43 281 9.07E-32 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 484 59.375 T 26-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 ProSitePatterns PS01244 Aconitase family signature 2. 417 430 - T 26-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 SUPERFAMILY SSF53732 3 482 2.75E-156 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 Gene3D G3DSA:3.30.499.10 4 163 5.3E-21 T 26-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 Pfam PF00330 Aconitase family (aconitate hydratase) 8 475 1.4E-148 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PANTHER PTHR11670 1 322 8.0E-273 T 26-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PANTHER PTHR11670 342 482 8.0E-273 T 26-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 ProSitePatterns PS00450 Aconitase family signature 1. 354 370 - T 26-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 483 5.6E-225 T 26-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PANTHER PTHR11670:SF38 1 322 8.0E-273 T 26-04-2016 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PANTHER PTHR11670:SF38 342 482 8.0E-273 T 26-04-2016 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 Gene3D G3DSA:3.40.1060.10 172 296 3.5E-38 T 26-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PRINTS PR00415 Aconitase family signature 113 121 1.3E-46 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PRINTS PR00415 Aconitase family signature 214 227 1.3E-46 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PRINTS PR00415 Aconitase family signature 358 369 1.3E-46 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PRINTS PR00415 Aconitase family signature 200 213 1.3E-46 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PRINTS PR00415 Aconitase family signature 301 315 1.3E-46 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PRINTS PR00415 Aconitase family signature 417 430 1.3E-46 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PRINTS PR00415 Aconitase family signature 138 153 1.3E-46 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PRINTS PR00415 Aconitase family signature 86 99 1.3E-46 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 PRINTS PR00415 Aconitase family signature 124 137 1.3E-46 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06090 abc23478bd658bd8ef2fa9184725fb15 484 Gene3D G3DSA:3.30.499.10 331 482 3.8E-58 T 26-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS08040 aeabe13b5607de2179ec16902d64787f 1051 Pfam PF04851 Type III restriction enzyme, res subunit 119 415 6.0E-9 T 26-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RGE_RS08040 aeabe13b5607de2179ec16902d64787f 1051 Gene3D G3DSA:3.40.50.300 645 707 7.7E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08040 aeabe13b5607de2179ec16902d64787f 1051 SUPERFAMILY SSF52540 493 548 7.08E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08040 aeabe13b5607de2179ec16902d64787f 1051 SUPERFAMILY SSF52540 163 217 7.08E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08040 aeabe13b5607de2179ec16902d64787f 1051 SUPERFAMILY SSF52540 612 690 7.08E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08040 aeabe13b5607de2179ec16902d64787f 1051 SUPERFAMILY SSF52540 328 418 7.08E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08040 aeabe13b5607de2179ec16902d64787f 1051 Gene3D G3DSA:3.40.50.300 160 265 2.1E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08040 aeabe13b5607de2179ec16902d64787f 1051 Gene3D G3DSA:3.40.50.300 349 362 2.1E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 Pfam PF00672 HAMP domain 192 260 2.0E-13 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 SUPERFAMILY SSF58104 240 513 2.35E-71 T 26-04-2016 RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 PANTHER PTHR32089:SF63 139 515 2.1E-143 T 26-04-2016 RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 2.4E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 2.4E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 2.4E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 2.4E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 2.4E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 181 2.2E-11 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 SMART SM00283 265 512 1.2E-90 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 PANTHER PTHR32089 139 515 2.1E-143 T 26-04-2016 RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 317 511 9.1E-59 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 Gene3D G3DSA:1.10.287.950 279 484 9.0E-59 T 26-04-2016 RGE_RS03880 1c631e4479ddc5200db301c159ce2342 522 SMART SM00304 211 264 2.3E-6 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS13175 3dedc6a6a82e7f8f70c1637ae6ded172 181 Hamap MF_01151 Protein GrpE [grpE]. 8 178 18.691 T 26-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RGE_RS13175 3dedc6a6a82e7f8f70c1637ae6ded172 181 Gene3D G3DSA:3.90.20.20 25 120 3.3E-25 T 26-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil RGE_RS13175 3dedc6a6a82e7f8f70c1637ae6ded172 181 SUPERFAMILY SSF58014 29 120 1.44E-22 T 26-04-2016 RGE_RS13175 3dedc6a6a82e7f8f70c1637ae6ded172 181 ProSitePatterns PS01071 grpE protein signature. 134 176 - T 26-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RGE_RS13175 3dedc6a6a82e7f8f70c1637ae6ded172 181 PRINTS PR00773 GrpE protein signature 157 176 1.1E-25 T 26-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RGE_RS13175 3dedc6a6a82e7f8f70c1637ae6ded172 181 PRINTS PR00773 GrpE protein signature 78 93 1.1E-25 T 26-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RGE_RS13175 3dedc6a6a82e7f8f70c1637ae6ded172 181 PRINTS PR00773 GrpE protein signature 131 146 1.1E-25 T 26-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RGE_RS13175 3dedc6a6a82e7f8f70c1637ae6ded172 181 PRINTS PR00773 GrpE protein signature 50 66 1.1E-25 T 26-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RGE_RS13175 3dedc6a6a82e7f8f70c1637ae6ded172 181 PANTHER PTHR21237 17 181 7.2E-48 T 26-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RGE_RS13175 3dedc6a6a82e7f8f70c1637ae6ded172 181 Pfam PF01025 GrpE 22 177 1.1E-47 T 26-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RGE_RS13175 3dedc6a6a82e7f8f70c1637ae6ded172 181 Gene3D G3DSA:2.30.22.10 124 179 1.0E-23 T 26-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 RGE_RS13175 3dedc6a6a82e7f8f70c1637ae6ded172 181 SUPERFAMILY SSF51064 124 179 5.75E-17 T 26-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 RGE_RS21935 d80cf60fedfb1fad0740255e10dc005f 312 Pfam PF02310 B12 binding domain 191 288 6.3E-7 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS21935 d80cf60fedfb1fad0740255e10dc005f 312 Gene3D G3DSA:1.10.1660.10 13 79 1.3E-13 T 26-04-2016 RGE_RS21935 d80cf60fedfb1fad0740255e10dc005f 312 Gene3D G3DSA:3.40.50.280 190 281 3.1E-11 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS21935 d80cf60fedfb1fad0740255e10dc005f 312 SUPERFAMILY SSF46955 13 89 1.19E-13 T 26-04-2016 IPR009061 Putative DNA-binding domain RGE_RS21935 d80cf60fedfb1fad0740255e10dc005f 312 Pfam PF02607 B12 binding domain 107 175 3.4E-5 T 26-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RGE_RS21935 d80cf60fedfb1fad0740255e10dc005f 312 Pfam PF13411 MerR HTH family regulatory protein 13 70 3.7E-12 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS21935 d80cf60fedfb1fad0740255e10dc005f 312 SMART SM00422 12 89 4.4E-4 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS21935 d80cf60fedfb1fad0740255e10dc005f 312 SUPERFAMILY SSF52242 188 281 2.98E-14 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS15490 563f65024b98bde77d85c083b9ad433c 418 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 30 411 8.1E-112 T 26-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RGE_RS15490 563f65024b98bde77d85c083b9ad433c 418 PANTHER PTHR11835:SF52 189 256 3.0E-233 T 26-04-2016 RGE_RS15490 563f65024b98bde77d85c083b9ad433c 418 PANTHER PTHR11835:SF52 276 417 3.0E-233 T 26-04-2016 RGE_RS15490 563f65024b98bde77d85c083b9ad433c 418 PANTHER PTHR11835:SF52 1 165 3.0E-233 T 26-04-2016 RGE_RS15490 563f65024b98bde77d85c083b9ad433c 418 PANTHER PTHR11835 189 256 3.0E-233 T 26-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RGE_RS15490 563f65024b98bde77d85c083b9ad433c 418 PANTHER PTHR11835 276 417 3.0E-233 T 26-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RGE_RS15490 563f65024b98bde77d85c083b9ad433c 418 PANTHER PTHR11835 1 165 3.0E-233 T 26-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RGE_RS15490 563f65024b98bde77d85c083b9ad433c 418 SUPERFAMILY SSF53659 2 417 4.42E-142 T 26-04-2016 RGE_RS15490 563f65024b98bde77d85c083b9ad433c 418 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 304 323 - T 26-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RGE_RS15490 563f65024b98bde77d85c083b9ad433c 418 SMART SM01329 29 413 6.5E-171 T 26-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RGE_RS15490 563f65024b98bde77d85c083b9ad433c 418 Gene3D G3DSA:3.40.718.10 12 417 2.3E-159 T 26-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RGE_RS15490 563f65024b98bde77d85c083b9ad433c 418 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 1 417 2.9E-219 T 26-04-2016 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RGE_RS04940 7aab5e84a6b2f5851118f772cc371789 311 PANTHER PTHR33694:SF1 1 306 2.3E-116 T 26-04-2016 RGE_RS04940 7aab5e84a6b2f5851118f772cc371789 311 Hamap MF_00388 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [lpxC]. 2 288 45.402 T 26-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RGE_RS04940 7aab5e84a6b2f5851118f772cc371789 311 SUPERFAMILY SSF54211 138 285 4.7E-46 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS04940 7aab5e84a6b2f5851118f772cc371789 311 PANTHER PTHR33694 1 306 2.3E-116 T 26-04-2016 RGE_RS04940 7aab5e84a6b2f5851118f772cc371789 311 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 283 1.9E-100 T 26-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RGE_RS04940 7aab5e84a6b2f5851118f772cc371789 311 Gene3D G3DSA:3.30.230.20 3 129 1.2E-40 T 26-04-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RGE_RS04940 7aab5e84a6b2f5851118f772cc371789 311 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 304 1.1E-110 T 26-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RGE_RS04940 7aab5e84a6b2f5851118f772cc371789 311 Gene3D G3DSA:3.30.1700.10 132 290 3.5E-54 T 26-04-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RGE_RS04940 7aab5e84a6b2f5851118f772cc371789 311 SUPERFAMILY SSF54211 3 129 9.1E-38 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS15915 af34438cfbc8864ce83a40fa4e928362 192 PANTHER PTHR19136 8 189 4.3E-41 T 26-04-2016 RGE_RS15915 af34438cfbc8864ce83a40fa4e928362 192 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 12 189 4.9E-66 T 26-04-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 RGE_RS15915 af34438cfbc8864ce83a40fa4e928362 192 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 9 192 27.757 T 26-04-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 RGE_RS15915 af34438cfbc8864ce83a40fa4e928362 192 PANTHER PTHR19136:SF81 8 189 4.3E-41 T 26-04-2016 RGE_RS15915 af34438cfbc8864ce83a40fa4e928362 192 Pfam PF12804 MobA-like NTP transferase domain 13 162 2.1E-31 T 26-04-2016 IPR025877 MobA-like NTP transferase RGE_RS15915 af34438cfbc8864ce83a40fa4e928362 192 Gene3D G3DSA:3.90.550.10 10 189 4.8E-52 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS15915 af34438cfbc8864ce83a40fa4e928362 192 SUPERFAMILY SSF53448 11 189 4.73E-31 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS20885 75d575d0e7dcd2263d965764cd847c85 312 SUPERFAMILY SSF101478 19 305 3.27E-65 T 26-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 RGE_RS20885 75d575d0e7dcd2263d965764cd847c85 312 PANTHER PTHR16222 20 312 2.5E-50 T 26-04-2016 RGE_RS20885 75d575d0e7dcd2263d965764cd847c85 312 PANTHER PTHR16222:SF12 20 312 2.5E-50 T 26-04-2016 RGE_RS20885 75d575d0e7dcd2263d965764cd847c85 312 Pfam PF03747 ADP-ribosylglycohydrolase 24 282 1.7E-48 T 26-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 RGE_RS20885 75d575d0e7dcd2263d965764cd847c85 312 TIGRFAM TIGR02662 dinitro_DRAG: ADP-ribosyl-[dinitrogen reductase] hydrolase 19 306 3.3E-119 T 26-04-2016 IPR013479 ADP-ribosyl-dinitrogen reductase hydrolase RGE_RS17290 5bf8896867f35fc288d4d3e76e0093aa 360 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 350 40.376 T 26-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS17290 5bf8896867f35fc288d4d3e76e0093aa 360 Pfam PF00072 Response regulator receiver domain 6 108 3.1E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17290 5bf8896867f35fc288d4d3e76e0093aa 360 Gene3D G3DSA:3.40.50.2300 2 108 2.0E-27 T 26-04-2016 RGE_RS17290 5bf8896867f35fc288d4d3e76e0093aa 360 Pfam PF01339 CheB methylesterase 167 345 3.2E-57 T 26-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS17290 5bf8896867f35fc288d4d3e76e0093aa 360 PIRSF PIRSF000876 1 353 5.0E-131 T 26-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS17290 5bf8896867f35fc288d4d3e76e0093aa 360 SUPERFAMILY SSF52738 163 351 9.29E-68 T 26-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS17290 5bf8896867f35fc288d4d3e76e0093aa 360 PANTHER PTHR24421 5 350 9.1E-147 T 26-04-2016 RGE_RS17290 5bf8896867f35fc288d4d3e76e0093aa 360 Gene3D G3DSA:3.40.50.180 163 351 1.6E-77 T 26-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RGE_RS17290 5bf8896867f35fc288d4d3e76e0093aa 360 SUPERFAMILY SSF52172 1 108 3.42E-27 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS17290 5bf8896867f35fc288d4d3e76e0093aa 360 SMART SM00448 4 119 5.0E-19 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17290 5bf8896867f35fc288d4d3e76e0093aa 360 PANTHER PTHR24421:SF21 5 350 9.1E-147 T 26-04-2016 RGE_RS08260 908c14d76b1db36fe58f30015e03fc0a 240 PANTHER PTHR34982 61 225 1.7E-28 T 26-04-2016 RGE_RS08260 908c14d76b1db36fe58f30015e03fc0a 240 PRINTS PR01003 Flagellar assembly protein FliH signature 191 207 3.1E-11 T 26-04-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RGE_RS08260 908c14d76b1db36fe58f30015e03fc0a 240 PRINTS PR01003 Flagellar assembly protein FliH signature 64 86 3.1E-11 T 26-04-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RGE_RS08260 908c14d76b1db36fe58f30015e03fc0a 240 PRINTS PR01003 Flagellar assembly protein FliH signature 163 190 3.1E-11 T 26-04-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RGE_RS08260 908c14d76b1db36fe58f30015e03fc0a 240 PRINTS PR01003 Flagellar assembly protein FliH signature 208 233 3.1E-11 T 26-04-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RGE_RS08260 908c14d76b1db36fe58f30015e03fc0a 240 PANTHER PTHR34982:SF1 61 225 1.7E-28 T 26-04-2016 RGE_RS08260 908c14d76b1db36fe58f30015e03fc0a 240 Pfam PF02108 Flagellar assembly protein FliH 100 225 2.6E-30 T 26-04-2016 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE RGE_RS04175 f12dc080f5a7c41cbef6b54d108f2213 218 Gene3D G3DSA:1.10.357.10 2 172 6.0E-26 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS04175 f12dc080f5a7c41cbef6b54d108f2213 218 Pfam PF13972 Bacterial transcriptional repressor 63 209 5.0E-44 T 26-04-2016 IPR025722 Bacterial transcriptional repressor TetR RGE_RS04175 f12dc080f5a7c41cbef6b54d108f2213 218 PANTHER PTHR30055:SF30 2 168 9.7E-31 T 26-04-2016 RGE_RS04175 f12dc080f5a7c41cbef6b54d108f2213 218 SUPERFAMILY SSF46689 2 75 2.44E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04175 f12dc080f5a7c41cbef6b54d108f2213 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 60 5.4E-9 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS04175 f12dc080f5a7c41cbef6b54d108f2213 218 PANTHER PTHR30055 2 168 9.7E-31 T 26-04-2016 RGE_RS04175 f12dc080f5a7c41cbef6b54d108f2213 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 4.3E-6 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS04175 f12dc080f5a7c41cbef6b54d108f2213 218 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 4.3E-6 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS18240 30ce7a65bc0fb7a78410df51c9b21f5b 255 PANTHER PTHR34108 1 252 3.3E-43 T 26-04-2016 RGE_RS18240 30ce7a65bc0fb7a78410df51c9b21f5b 255 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 9 253 25.379 T 26-04-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 RGE_RS18240 30ce7a65bc0fb7a78410df51c9b21f5b 255 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 10 252 1.2E-57 T 26-04-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 RGE_RS18240 30ce7a65bc0fb7a78410df51c9b21f5b 255 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 11 102 1.7E-10 T 26-04-2016 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 RGE_RS18240 30ce7a65bc0fb7a78410df51c9b21f5b 255 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 148 250 5.0E-29 T 26-04-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 RGE_RS18240 30ce7a65bc0fb7a78410df51c9b21f5b 255 Gene3D G3DSA:2.160.20.70 134 252 4.3E-36 T 26-04-2016 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 RGE_RS18240 30ce7a65bc0fb7a78410df51c9b21f5b 255 SUPERFAMILY SSF63848 146 252 3.14E-29 T 26-04-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 RGE_RS18240 30ce7a65bc0fb7a78410df51c9b21f5b 255 PANTHER PTHR34108:SF1 1 252 3.3E-43 T 26-04-2016 RGE_RS13680 d0edbbc064f2c4ef4dfb41dc95b692a6 188 Pfam PF08281 Sigma-70, region 4 125 174 3.8E-15 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13680 d0edbbc064f2c4ef4dfb41dc95b692a6 188 Gene3D G3DSA:1.10.1740.10 7 99 7.9E-9 T 26-04-2016 RGE_RS13680 d0edbbc064f2c4ef4dfb41dc95b692a6 188 Pfam PF04542 Sigma-70 region 2 13 75 6.5E-5 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13680 d0edbbc064f2c4ef4dfb41dc95b692a6 188 SUPERFAMILY SSF88946 10 91 3.77E-9 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13680 d0edbbc064f2c4ef4dfb41dc95b692a6 188 PANTHER PTHR30173 4 182 1.6E-23 T 26-04-2016 RGE_RS13680 d0edbbc064f2c4ef4dfb41dc95b692a6 188 Gene3D G3DSA:1.10.10.10 119 181 1.2E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13680 d0edbbc064f2c4ef4dfb41dc95b692a6 188 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 7 181 2.3E-20 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS13680 d0edbbc064f2c4ef4dfb41dc95b692a6 188 SUPERFAMILY SSF88659 118 181 8.97E-16 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 SUPERFAMILY SSF64518 455 661 1.7E-20 T 26-04-2016 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 6 346 3.9E-76 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 SUPERFAMILY SSF64518 146 427 1.83E-19 T 26-04-2016 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 PANTHER PTHR30033 1 434 1.3E-96 T 26-04-2016 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 PANTHER PTHR30033 468 664 1.3E-96 T 26-04-2016 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 PANTHER PTHR30033:SF1 1 434 1.3E-96 T 26-04-2016 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 PANTHER PTHR30033:SF1 468 664 1.3E-96 T 26-04-2016 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 PRINTS PR01005 Flagellar hook-associated protein signature 417 434 1.1E-14 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 PRINTS PR01005 Flagellar hook-associated protein signature 13 36 1.1E-14 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 PRINTS PR01005 Flagellar hook-associated protein signature 51 73 1.1E-14 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 PRINTS PR01005 Flagellar hook-associated protein signature 158 182 1.1E-14 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 PRINTS PR01005 Flagellar hook-associated protein signature 125 145 1.1E-14 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 PRINTS PR01005 Flagellar hook-associated protein signature 216 234 1.1E-14 T 26-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RGE_RS08535 18a0b01da3e0eb4b1670ed75de577bc0 665 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 613 661 4.4E-11 T 26-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RGE_RS09105 04b465cad69d67d62716c82fd3c7b4ce 508 PANTHER PTHR30389:SF1 3 508 3.3E-295 T 26-04-2016 RGE_RS09105 04b465cad69d67d62716c82fd3c7b4ce 508 Pfam PF05683 Fumarase C-terminus 290 491 3.3E-79 T 26-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RGE_RS09105 04b465cad69d67d62716c82fd3c7b4ce 508 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 12 287 8.1E-65 T 26-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 RGE_RS09105 04b465cad69d67d62716c82fd3c7b4ce 508 Pfam PF05681 Fumarate hydratase (Fumerase) 12 286 9.4E-103 T 26-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 RGE_RS09105 04b465cad69d67d62716c82fd3c7b4ce 508 PIRSF PIRSF001394 1 508 6.9E-213 T 26-04-2016 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS09105 04b465cad69d67d62716c82fd3c7b4ce 508 Gene3D G3DSA:3.20.130.10 314 490 7.2E-70 T 26-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RGE_RS09105 04b465cad69d67d62716c82fd3c7b4ce 508 SUPERFAMILY SSF117457 321 489 1.7E-60 T 26-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RGE_RS09105 04b465cad69d67d62716c82fd3c7b4ce 508 PANTHER PTHR30389 3 508 3.3E-295 T 26-04-2016 RGE_RS09105 04b465cad69d67d62716c82fd3c7b4ce 508 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 328 488 2.8E-45 T 26-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RGE_RS09130 65b83e18bcabe8194e42c7f378cace8a 234 PANTHER PTHR30231 1 230 5.4E-94 T 26-04-2016 RGE_RS09130 65b83e18bcabe8194e42c7f378cace8a 234 SUPERFAMILY SSF53098 1 175 1.22E-51 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS09130 65b83e18bcabe8194e42c7f378cace8a 234 SMART SM00479 2 174 2.9E-44 T 26-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RGE_RS09130 65b83e18bcabe8194e42c7f378cace8a 234 PANTHER PTHR30231:SF0 1 230 5.4E-94 T 26-04-2016 RGE_RS09130 65b83e18bcabe8194e42c7f378cace8a 234 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 211 6.2E-58 T 26-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS09130 65b83e18bcabe8194e42c7f378cace8a 234 Gene3D G3DSA:3.30.420.10 1 174 9.7E-61 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS09130 65b83e18bcabe8194e42c7f378cace8a 234 Pfam PF00929 Exonuclease 4 165 3.2E-33 T 26-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RGE_RS09130 65b83e18bcabe8194e42c7f378cace8a 234 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 231 3.2E-87 T 26-04-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS06010 212eec6cd1838bb0f354187e6fb57348 234 SUPERFAMILY SSF54292 3 103 4.85E-28 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS06010 212eec6cd1838bb0f354187e6fb57348 234 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 108 1.3E-31 T 26-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RGE_RS06010 212eec6cd1838bb0f354187e6fb57348 234 SUPERFAMILY SSF46548 104 232 3.84E-39 T 26-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RGE_RS06010 212eec6cd1838bb0f354187e6fb57348 234 PANTHER PTHR11921:SF29 2 232 1.5E-133 T 26-04-2016 RGE_RS06010 212eec6cd1838bb0f354187e6fb57348 234 PANTHER PTHR11921 2 232 1.5E-133 T 26-04-2016 RGE_RS06010 212eec6cd1838bb0f354187e6fb57348 234 Gene3D G3DSA:3.10.20.30 4 103 5.4E-37 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS06010 212eec6cd1838bb0f354187e6fb57348 234 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS06010 212eec6cd1838bb0f354187e6fb57348 234 Gene3D G3DSA:1.10.1060.10 104 232 8.1E-49 T 26-04-2016 RGE_RS06010 212eec6cd1838bb0f354187e6fb57348 234 Pfam PF13237 4Fe-4S dicluster domain 144 213 1.6E-9 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS06010 212eec6cd1838bb0f354187e6fb57348 234 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 8 226 1.1E-85 T 26-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RGE_RS13720 59531a682439634e8c5e4bb888b60f16 395 PANTHER PTHR31384:SF26 74 322 1.2E-39 T 26-04-2016 RGE_RS13720 59531a682439634e8c5e4bb888b60f16 395 SUPERFAMILY SSF55729 190 364 2.27E-31 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS13720 59531a682439634e8c5e4bb888b60f16 395 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 20 390 1.5E-137 T 26-04-2016 IPR007434 Peptidogalycan biosysnthesis/recognition RGE_RS13720 59531a682439634e8c5e4bb888b60f16 395 Gene3D G3DSA:3.40.630.30 190 341 1.5E-23 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS13720 59531a682439634e8c5e4bb888b60f16 395 PANTHER PTHR31384 74 322 1.2E-39 T 26-04-2016 RGE_RS06665 cbf15335c2b8611bc817e6f834859a20 523 Gene3D G3DSA:3.40.50.300 1 218 1.4E-71 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06665 cbf15335c2b8611bc817e6f834859a20 523 SMART SM00487 20 229 6.4E-50 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS06665 cbf15335c2b8611bc817e6f834859a20 523 Gene3D G3DSA:3.40.50.300 219 378 6.7E-48 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06665 cbf15335c2b8611bc817e6f834859a20 523 PANTHER PTHR24031 1 478 1.7E-159 T 26-04-2016 RGE_RS06665 cbf15335c2b8611bc817e6f834859a20 523 PANTHER PTHR24031:SF261 1 478 1.7E-159 T 26-04-2016 RGE_RS06665 cbf15335c2b8611bc817e6f834859a20 523 Pfam PF00271 Helicase conserved C-terminal domain 242 347 2.9E-25 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS06665 cbf15335c2b8611bc817e6f834859a20 523 SUPERFAMILY SSF52540 80 367 8.8E-71 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06665 cbf15335c2b8611bc817e6f834859a20 523 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 160 168 - T 26-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RGE_RS06665 cbf15335c2b8611bc817e6f834859a20 523 Pfam PF00270 DEAD/DEAH box helicase 25 197 1.7E-43 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS06665 cbf15335c2b8611bc817e6f834859a20 523 SMART SM00490 266 347 2.6E-31 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS02045 15e64e14bff77b97766fb68c2e99ea24 510 Pfam PF11984 Protein of unknown function (DUF3485) 300 496 4.5E-30 T 26-04-2016 IPR014263 Methanolan biosynthesis EpsI RGE_RS02045 15e64e14bff77b97766fb68c2e99ea24 510 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 19 269 2.8E-58 T 26-04-2016 IPR019127 Exosortase EpsH-related KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS02045 15e64e14bff77b97766fb68c2e99ea24 510 TIGRFAM TIGR03109 exosortase_1: exosortase A 6 270 1.9E-94 T 26-04-2016 IPR017540 Exosortase 1 RGE_RS02045 15e64e14bff77b97766fb68c2e99ea24 510 TIGRFAM TIGR02602 8TM_EpsH: exosortase 35 269 1.4E-71 T 26-04-2016 IPR013426 Exosortase, EpsH RGE_RS02045 15e64e14bff77b97766fb68c2e99ea24 510 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 176 269 7.6E-20 T 26-04-2016 IPR026392 Exosortase/Archaeosortase domain RGE_RS02045 15e64e14bff77b97766fb68c2e99ea24 510 TIGRFAM TIGR02914 EpsI_fam: EpsI family protein 328 499 3.6E-29 T 26-04-2016 IPR014263 Methanolan biosynthesis EpsI RGE_RS16295 16e4bdc39777c80472349b271577c415 169 TIGRFAM TIGR02020 BchF: 2-vinyl bacteriochlorophyllide hydratase 19 160 4.7E-58 T 26-04-2016 IPR009905 2-vinyl bacteriochlorophyllide hydratase GO:0016836|GO:0019685|GO:0030494 KEGG: 00253+4.2.1.-|KEGG: 00300+4.2.1.-|KEGG: 00350+4.2.1.-|KEGG: 00362+4.2.1.-|KEGG: 00363+4.2.1.-|KEGG: 00400+4.2.1.-|KEGG: 00623+4.2.1.-|KEGG: 00626+4.2.1.-|KEGG: 00650+4.2.1.-|KEGG: 00860+4.2.1.-|KEGG: 00903+4.2.1.-|UniPathway: UPA00671 RGE_RS16295 16e4bdc39777c80472349b271577c415 169 Pfam PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) 20 157 1.8E-64 T 26-04-2016 IPR009905 2-vinyl bacteriochlorophyllide hydratase GO:0016836|GO:0019685|GO:0030494 KEGG: 00253+4.2.1.-|KEGG: 00300+4.2.1.-|KEGG: 00350+4.2.1.-|KEGG: 00362+4.2.1.-|KEGG: 00363+4.2.1.-|KEGG: 00400+4.2.1.-|KEGG: 00623+4.2.1.-|KEGG: 00626+4.2.1.-|KEGG: 00650+4.2.1.-|KEGG: 00860+4.2.1.-|KEGG: 00903+4.2.1.-|UniPathway: UPA00671 RGE_RS14125 ef0535fedf498f30516bd3631c07d360 339 PANTHER PTHR34580 1 326 4.4E-65 T 26-04-2016 RGE_RS14125 ef0535fedf498f30516bd3631c07d360 339 Pfam PF08279 HTH domain 8 61 2.9E-8 T 26-04-2016 IPR013196 Helix-turn-helix, type 11 RGE_RS14125 ef0535fedf498f30516bd3631c07d360 339 PANTHER PTHR34580:SF3 1 326 4.4E-65 T 26-04-2016 RGE_RS14125 ef0535fedf498f30516bd3631c07d360 339 SUPERFAMILY SSF46785 2 62 1.73E-6 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14125 ef0535fedf498f30516bd3631c07d360 339 Pfam PF13280 WYL domain 143 317 1.4E-38 T 26-04-2016 IPR026881 WYL domain RGE_RS14125 ef0535fedf498f30516bd3631c07d360 339 Gene3D G3DSA:1.10.10.10 1 64 5.1E-13 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00640 30e2143637344fbe657b8824b100736a 376 Gene3D G3DSA:3.40.50.720 169 198 1.5E-5 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00640 30e2143637344fbe657b8824b100736a 376 SUPERFAMILY SSF51735 137 324 1.26E-34 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00640 30e2143637344fbe657b8824b100736a 376 Gene3D G3DSA:3.40.50.1770 1 168 1.3E-54 T 26-04-2016 RGE_RS00640 30e2143637344fbe657b8824b100736a 376 SUPERFAMILY SSF52283 1 167 2.04E-50 T 26-04-2016 RGE_RS00640 30e2143637344fbe657b8824b100736a 376 Gene3D G3DSA:3.40.50.1770 199 373 3.1E-38 T 26-04-2016 RGE_RS00640 30e2143637344fbe657b8824b100736a 376 PANTHER PTHR10160 1 373 3.2E-155 T 26-04-2016 RGE_RS00640 30e2143637344fbe657b8824b100736a 376 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 135 1.7E-41 T 26-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RGE_RS00640 30e2143637344fbe657b8824b100736a 376 SMART SM01002 145 319 8.3E-82 T 26-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RGE_RS00640 30e2143637344fbe657b8824b100736a 376 SMART SM01003 4 136 2.1E-65 T 26-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RGE_RS00640 30e2143637344fbe657b8824b100736a 376 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 374 9.3E-70 T 26-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RGE_RS01255 ea5c4348dc14656cd0269e444b40a8e3 403 Gene3D G3DSA:2.40.170.10 28 403 4.9E-115 T 26-04-2016 IPR003192 Porin, LamB type GO:0006810|GO:0016020 RGE_RS01255 ea5c4348dc14656cd0269e444b40a8e3 403 Pfam PF02264 LamB porin 29 403 2.6E-117 T 26-04-2016 IPR003192 Porin, LamB type GO:0006810|GO:0016020 RGE_RS01255 ea5c4348dc14656cd0269e444b40a8e3 403 PANTHER PTHR38762 3 403 3.4E-76 T 26-04-2016 RGE_RS01255 ea5c4348dc14656cd0269e444b40a8e3 403 SUPERFAMILY SSF56935 27 403 5.49E-110 T 26-04-2016 RGE_RS01255 ea5c4348dc14656cd0269e444b40a8e3 403 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 34 398 1.0E-64 T 26-04-2016 IPR003192 Porin, LamB type GO:0006810|GO:0016020 RGE_RS22925 010bc09c5658fea1b7ee9115fbbbe5af 329 PANTHER PTHR38418 1 204 7.2E-38 T 26-04-2016 RGE_RS22925 010bc09c5658fea1b7ee9115fbbbe5af 329 Gene3D G3DSA:3.10.580.10 201 326 1.2E-37 T 26-04-2016 RGE_RS22925 010bc09c5658fea1b7ee9115fbbbe5af 329 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 50 319 7.9E-109 T 26-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RGE_RS22925 010bc09c5658fea1b7ee9115fbbbe5af 329 Gene3D G3DSA:3.40.50.10490 15 200 4.1E-51 T 26-04-2016 RGE_RS22925 010bc09c5658fea1b7ee9115fbbbe5af 329 Pfam PF00571 CBS domain 206 262 6.9E-7 T 26-04-2016 IPR000644 CBS domain RGE_RS22925 010bc09c5658fea1b7ee9115fbbbe5af 329 Pfam PF00571 CBS domain 273 326 5.8E-6 T 26-04-2016 IPR000644 CBS domain RGE_RS22925 010bc09c5658fea1b7ee9115fbbbe5af 329 SMART SM00116 215 263 0.26 T 26-04-2016 IPR000644 CBS domain RGE_RS22925 010bc09c5658fea1b7ee9115fbbbe5af 329 SMART SM00116 280 328 2.7 T 26-04-2016 IPR000644 CBS domain RGE_RS22925 010bc09c5658fea1b7ee9115fbbbe5af 329 Pfam PF01380 SIS domain 45 177 3.1E-30 T 26-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RGE_RS22925 010bc09c5658fea1b7ee9115fbbbe5af 329 SUPERFAMILY SSF53697 14 324 2.45E-63 T 26-04-2016 RGE_RS22925 010bc09c5658fea1b7ee9115fbbbe5af 329 PIRSF PIRSF004692 1 329 1.2E-126 T 26-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RGE_RS22925 010bc09c5658fea1b7ee9115fbbbe5af 329 PANTHER PTHR38418:SF1 1 204 7.2E-38 T 26-04-2016 RGE_RS20875 a61d8d1762a30ffa69f37e590619479b 78 Pfam PF09723 Zinc ribbon domain 1 39 1.2E-14 T 26-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RGE_RS20875 a61d8d1762a30ffa69f37e590619479b 78 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 47 9.3E-17 T 26-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RGE_RS20875 a61d8d1762a30ffa69f37e590619479b 78 SMART SM00834 1 40 1.3E-15 T 26-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 282 392 4.7E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 Pfam PF08448 PAS fold 26 132 2.5E-11 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 Gene3D G3DSA:3.30.450.20 26 129 1.1E-4 T 26-04-2016 RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 435 452 2.2E-10 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 452 472 2.2E-10 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 SUPERFAMILY SSF55785 152 246 3.84E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 Pfam PF02954 Bacterial regulatory protein, Fis family 432 469 1.0E-11 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 Gene3D G3DSA:1.10.10.60 405 471 1.5E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 SMART SM00091 281 350 0.055 T 26-04-2016 IPR000014 PAS domain RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 SMART SM00091 17 83 38.0 T 26-04-2016 IPR000014 PAS domain RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 SMART SM00091 159 223 0.23 T 26-04-2016 IPR000014 PAS domain RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 SUPERFAMILY SSF55785 22 130 4.38E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 SUPERFAMILY SSF55785 279 390 1.03E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 SUPERFAMILY SSF46689 407 471 2.69E-14 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 Pfam PF13426 PAS domain 291 390 2.3E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 TIGRFAM TIGR02040 PpsR-CrtJ: transcriptional regulator PpsR 22 471 1.0E-209 T 26-04-2016 IPR011785 Transcription regulator PpsR UniPathway: UPA00683 RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 Gene3D G3DSA:3.30.450.20 155 252 2.1E-6 T 26-04-2016 RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 Gene3D G3DSA:3.30.450.20 278 390 5.6E-10 T 26-04-2016 RGE_RS16285 9f6a801bcf0d92887fb0087107358550 484 Pfam PF13188 PAS domain 160 207 3.9E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS15095 42e1393e7ac47d704a4767d22df856fe 132 PANTHER PTHR34109:SF1 2 125 2.4E-22 T 26-04-2016 RGE_RS15095 42e1393e7ac47d704a4767d22df856fe 132 Pfam PF12681 Glyoxalase-like domain 3 125 2.4E-11 T 26-04-2016 IPR025870 Glyoxalase-like domain RGE_RS15095 42e1393e7ac47d704a4767d22df856fe 132 SUPERFAMILY SSF54593 1 127 3.62E-27 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS15095 42e1393e7ac47d704a4767d22df856fe 132 PANTHER PTHR34109 2 125 2.4E-22 T 26-04-2016 RGE_RS15095 42e1393e7ac47d704a4767d22df856fe 132 Gene3D G3DSA:3.10.180.10 1 126 3.4E-35 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS16220 d32ababa89fea357264601d4b2089163 473 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 429 439 - T 26-04-2016 IPR030391 RNA methyltransferase TrmA, conserved site RGE_RS16220 d32ababa89fea357264601d4b2089163 473 Gene3D G3DSA:2.40.50.140 8 75 1.6E-20 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS16220 d32ababa89fea357264601d4b2089163 473 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 7 447 68.225 T 26-04-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 RGE_RS16220 d32ababa89fea357264601d4b2089163 473 Gene3D G3DSA:3.40.50.150 258 446 1.3E-50 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16220 d32ababa89fea357264601d4b2089163 473 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 127 445 5.0E-15 T 26-04-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 RGE_RS16220 d32ababa89fea357264601d4b2089163 473 PANTHER PTHR11061:SF30 8 451 1.4E-100 T 26-04-2016 RGE_RS16220 d32ababa89fea357264601d4b2089163 473 SUPERFAMILY SSF53335 66 446 8.08E-74 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16220 d32ababa89fea357264601d4b2089163 473 PANTHER PTHR11061 8 451 1.4E-100 T 26-04-2016 RGE_RS16220 d32ababa89fea357264601d4b2089163 473 SUPERFAMILY SSF50249 8 61 1.71E-8 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS16220 d32ababa89fea357264601d4b2089163 473 Pfam PF01938 TRAM domain 10 49 1.8E-5 T 26-04-2016 IPR002792 TRAM domain RGE_RS23145 317aa7dd590ad2a4c4aa17ae893e00c8 158 PANTHER PTHR23091 6 151 9.5E-22 T 26-04-2016 RGE_RS23145 317aa7dd590ad2a4c4aa17ae893e00c8 158 Gene3D G3DSA:3.40.630.30 5 144 1.9E-31 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS23145 317aa7dd590ad2a4c4aa17ae893e00c8 158 SUPERFAMILY SSF55729 9 143 1.89E-30 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS23145 317aa7dd590ad2a4c4aa17ae893e00c8 158 Pfam PF00583 Acetyltransferase (GNAT) family 64 140 1.3E-15 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 Gene3D G3DSA:3.40.50.720 15 257 4.6E-78 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 27 256 1.1E-61 T 26-04-2016 RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 9.9E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 9.9E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 9.9E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 9.9E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 9.9E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 20 37 9.9E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 SUPERFAMILY SSF51735 18 256 1.09E-76 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 19 198 3.6E-4 T 26-04-2016 RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 6.5E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 6.5E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 6.5E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PANTHER PTHR24322:SF343 23 150 1.6E-53 T 26-04-2016 RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PANTHER PTHR24322:SF343 167 199 1.6E-53 T 26-04-2016 RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PANTHER PTHR24322 23 150 1.6E-53 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS14440 db41fce8c7ee0180fd6d56db7baabddd 258 PANTHER PTHR24322 167 199 1.6E-53 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17990 330812babc90724b1c3ad0f27ce00ad1 205 PANTHER PTHR13696 1 205 9.8E-18 T 26-04-2016 RGE_RS17990 330812babc90724b1c3ad0f27ce00ad1 205 SUPERFAMILY SSF52540 1 189 2.37E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17990 330812babc90724b1c3ad0f27ce00ad1 205 PANTHER PTHR13696:SF66 1 205 9.8E-18 T 26-04-2016 RGE_RS17990 330812babc90724b1c3ad0f27ce00ad1 205 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 161 2.9E-18 T 26-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RGE_RS17990 330812babc90724b1c3ad0f27ce00ad1 205 Gene3D G3DSA:3.40.50.300 3 200 4.0E-30 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17990 330812babc90724b1c3ad0f27ce00ad1 205 PIRSF PIRSF009320 1 200 8.7E-27 T 26-04-2016 RGE_RS22445 b4604c1e6aa16a66cbbe3337f808e7d1 218 Gene3D G3DSA:3.30.70.1070 138 215 2.0E-22 T 26-04-2016 IPR007730 Sporulation-related domain GO:0042834 RGE_RS22445 b4604c1e6aa16a66cbbe3337f808e7d1 218 SUPERFAMILY SSF110997 142 214 2.88E-17 T 26-04-2016 IPR007730 Sporulation-related domain GO:0042834 RGE_RS22445 b4604c1e6aa16a66cbbe3337f808e7d1 218 Pfam PF05036 Sporulation related domain 142 210 3.5E-17 T 26-04-2016 IPR007730 Sporulation-related domain GO:0042834 RGE_RS14325 26990def9c5cf8b259229876ad85b497 117 Gene3D G3DSA:3.30.70.1060 1 108 8.5E-35 T 26-04-2016 RGE_RS14325 26990def9c5cf8b259229876ad85b497 117 PANTHER PTHR35174:SF3 2 109 1.1E-35 T 26-04-2016 RGE_RS14325 26990def9c5cf8b259229876ad85b497 117 PANTHER PTHR35174 2 109 1.1E-35 T 26-04-2016 RGE_RS14325 26990def9c5cf8b259229876ad85b497 117 Pfam PF03795 YCII-related domain 1 108 1.4E-22 T 26-04-2016 IPR005545 YCII-related RGE_RS14325 26990def9c5cf8b259229876ad85b497 117 SUPERFAMILY SSF54909 1 108 7.51E-32 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 6 664 35.663 T 26-04-2016 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 PANTHER PTHR11070:SF19 8 641 1.9E-249 T 26-04-2016 RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 Gene3D G3DSA:3.40.50.300 183 280 3.0E-66 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 Gene3D G3DSA:3.40.50.300 5 108 3.0E-66 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 Pfam PF00580 UvrD/REP helicase N-terminal domain 131 266 1.9E-37 T 26-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 Pfam PF00580 UvrD/REP helicase N-terminal domain 8 116 2.2E-33 T 26-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 Gene3D G3DSA:3.40.50.300 281 384 3.6E-65 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 Gene3D G3DSA:3.40.50.300 555 643 3.6E-65 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 Gene3D G3DSA:1.10.486.10 385 536 5.5E-35 T 26-04-2016 RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 Gene3D G3DSA:1.10.10.160 112 182 9.9E-13 T 26-04-2016 IPR013986 DExx box DNA helicase domain RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 SUPERFAMILY SSF52540 5 641 2.88E-154 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 Pfam PF13361 UvrD-like helicase C-terminal domain 273 619 5.3E-59 T 26-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RGE_RS01305 fd69c9993f70aaa4216c3769fecb1803 675 PANTHER PTHR11070 8 641 1.9E-249 T 26-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RGE_RS14780 5f41333883f94245401723d990ad49bd 612 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 4 611 5.1E-147 T 26-04-2016 IPR010272 Type VI secretion system, TssF-like RGE_RS14780 5f41333883f94245401723d990ad49bd 612 PANTHER PTHR35370:SF1 2 611 8.0E-97 T 26-04-2016 RGE_RS14780 5f41333883f94245401723d990ad49bd 612 PANTHER PTHR35370 2 611 8.0E-97 T 26-04-2016 RGE_RS14780 5f41333883f94245401723d990ad49bd 612 PIRSF PIRSF028304 1 611 5.5E-141 T 26-04-2016 IPR010272 Type VI secretion system, TssF-like RGE_RS14780 5f41333883f94245401723d990ad49bd 612 Pfam PF05947 Type VI secretion system, ImpG, VasA, VC_A0110 5 608 2.1E-154 T 26-04-2016 IPR010272 Type VI secretion system, TssF-like RGE_RS02360 9e2834e5d548c5590a43a318a9ff68ed 277 Pfam PF03167 Uracil DNA glycosylase superfamily 107 259 5.9E-47 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS02360 9e2834e5d548c5590a43a318a9ff68ed 277 SMART SM00986 107 260 7.8E-42 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS02360 9e2834e5d548c5590a43a318a9ff68ed 277 Gene3D G3DSA:3.40.470.10 82 268 2.9E-70 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS02360 9e2834e5d548c5590a43a318a9ff68ed 277 SMART SM00987 107 260 7.8E-42 T 26-04-2016 RGE_RS02360 9e2834e5d548c5590a43a318a9ff68ed 277 SUPERFAMILY SSF52141 82 264 1.37E-62 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS02360 9e2834e5d548c5590a43a318a9ff68ed 277 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 93 260 1.2E-58 T 26-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain RGE_RS02360 9e2834e5d548c5590a43a318a9ff68ed 277 PANTHER PTHR33693:SF1 26 277 7.7E-75 T 26-04-2016 RGE_RS02360 9e2834e5d548c5590a43a318a9ff68ed 277 PANTHER PTHR33693 26 277 7.7E-75 T 26-04-2016 RGE_RS06730 5edc2fb96ca7a4cf687a82a322c3cf9b 189 Pfam PF13580 SIS domain 12 143 2.7E-29 T 26-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RGE_RS06730 5edc2fb96ca7a4cf687a82a322c3cf9b 189 PANTHER PTHR30390 1 186 4.8E-81 T 26-04-2016 RGE_RS06730 5edc2fb96ca7a4cf687a82a322c3cf9b 189 SUPERFAMILY SSF53697 14 187 1.56E-50 T 26-04-2016 RGE_RS06730 5edc2fb96ca7a4cf687a82a322c3cf9b 189 Gene3D G3DSA:3.40.50.10490 19 187 1.6E-58 T 26-04-2016 RGE_RS06730 5edc2fb96ca7a4cf687a82a322c3cf9b 189 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 186 37.337 T 26-04-2016 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478|UniPathway: UPA00041 RGE_RS06730 5edc2fb96ca7a4cf687a82a322c3cf9b 189 PANTHER PTHR30390:SF6 1 186 4.8E-81 T 26-04-2016 RGE_RS21280 18140d1e63134b332717f34c35c766fd 265 Gene3D G3DSA:3.40.1130.10 64 227 2.4E-20 T 26-04-2016 RGE_RS21280 18140d1e63134b332717f34c35c766fd 265 PANTHER PTHR10434 1 246 2.5E-47 T 26-04-2016 RGE_RS21280 18140d1e63134b332717f34c35c766fd 265 SUPERFAMILY SSF69593 41 249 6.67E-42 T 26-04-2016 RGE_RS21280 18140d1e63134b332717f34c35c766fd 265 SMART SM00563 80 195 5.4E-32 T 26-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RGE_RS21280 18140d1e63134b332717f34c35c766fd 265 Pfam PF01553 Acyltransferase 63 192 1.0E-22 T 26-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RGE_RS19175 f87d2995e2c902dc607db2000acceffe 173 PANTHER PTHR10003:SF40 1 173 3.5E-41 T 26-04-2016 RGE_RS19175 f87d2995e2c902dc607db2000acceffe 173 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 66 76 - T 26-04-2016 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854 RGE_RS19175 f87d2995e2c902dc607db2000acceffe 173 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 36 172 1.5E-29 T 26-04-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS19175 f87d2995e2c902dc607db2000acceffe 173 Gene3D G3DSA:2.60.40.200 24 172 3.7E-42 T 26-04-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS19175 f87d2995e2c902dc607db2000acceffe 173 SUPERFAMILY SSF49329 33 172 3.8E-45 T 26-04-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RGE_RS19175 f87d2995e2c902dc607db2000acceffe 173 PANTHER PTHR10003 1 173 3.5E-41 T 26-04-2016 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone MetaCyc: PWY-6854 RGE_RS19175 f87d2995e2c902dc607db2000acceffe 173 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 161 172 - T 26-04-2016 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854 RGE_RS11885 6598d1d03bcf66fb983cdc759789eec8 593 Gene3D G3DSA:1.20.140.10 292 464 1.3E-45 T 26-04-2016 RGE_RS11885 6598d1d03bcf66fb983cdc759789eec8 593 Gene3D G3DSA:2.40.110.10 156 281 1.7E-22 T 26-04-2016 RGE_RS11885 6598d1d03bcf66fb983cdc759789eec8 593 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 36 153 7.7E-9 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS11885 6598d1d03bcf66fb983cdc759789eec8 593 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 292 459 5.3E-18 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS11885 6598d1d03bcf66fb983cdc759789eec8 593 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 476 586 1.8E-18 T 26-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RGE_RS11885 6598d1d03bcf66fb983cdc759789eec8 593 SUPERFAMILY SSF47203 297 467 2.74E-40 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS11885 6598d1d03bcf66fb983cdc759789eec8 593 PANTHER PTHR10909 11 484 3.5E-178 T 26-04-2016 RGE_RS11885 6598d1d03bcf66fb983cdc759789eec8 593 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 158 277 1.5E-11 T 26-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RGE_RS11885 6598d1d03bcf66fb983cdc759789eec8 593 SUPERFAMILY SSF56645 32 289 1.7E-45 T 26-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RGE_RS11885 6598d1d03bcf66fb983cdc759789eec8 593 PANTHER PTHR10909:SF269 11 484 3.5E-178 T 26-04-2016 RGE_RS11885 6598d1d03bcf66fb983cdc759789eec8 593 Gene3D G3DSA:1.10.540.10 32 154 1.2E-13 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS08405 dcc205060777a4a0b5d72125dbec0b08 210 Gene3D G3DSA:1.10.287.500 43 136 3.8E-18 T 26-04-2016 RGE_RS08405 dcc205060777a4a0b5d72125dbec0b08 210 Pfam PF04344 Chemotaxis phosphatase, CheZ 20 137 4.5E-26 T 26-04-2016 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- RGE_RS08405 dcc205060777a4a0b5d72125dbec0b08 210 SUPERFAMILY SSF75708 18 137 5.89E-23 T 26-04-2016 RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 PANTHER PTHR24423:SF375 72 182 6.0E-84 T 26-04-2016 RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 PANTHER PTHR24423 72 182 6.0E-84 T 26-04-2016 RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 PANTHER PTHR24423 215 556 6.0E-84 T 26-04-2016 RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 SUPERFAMILY SSF103190 63 185 7.85E-27 T 26-04-2016 IPR029151 Periplasmic sensor domain-like RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 535 2.1E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 554 2.1E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 501 2.1E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 SUPERFAMILY SSF55785 238 291 4.19E-6 T 26-04-2016 IPR000014 PAS domain RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 Gene3D G3DSA:3.30.450.20 238 293 7.8E-6 T 26-04-2016 RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 SUPERFAMILY SSF55874 447 554 5.63E-24 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 453 555 3.1E-14 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 SUPERFAMILY SSF55890 352 392 4.32E-7 T 26-04-2016 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 SMART SM00387 446 557 4.2E-18 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 Gene3D G3DSA:3.30.565.10 450 554 2.1E-20 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 Gene3D G3DSA:3.30.450.20 60 187 3.3E-35 T 26-04-2016 RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 PANTHER PTHR24423:SF375 215 556 6.0E-84 T 26-04-2016 RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 Gene3D G3DSA:1.10.287.130 336 394 1.9E-16 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11300 b5720159f4200e6b5b410e877e67cab3 563 Pfam PF17203 Single cache domain 3 62 187 3.1E-14 T 26-04-2016 IPR033463 Single cache domain 3 RGE_RS11650 d33625ca0bdb4755ad4a8ce3b22c5d33 259 PANTHER PTHR10204:SF46 1 219 2.7E-114 T 26-04-2016 RGE_RS11650 d33625ca0bdb4755ad4a8ce3b22c5d33 259 Gene3D G3DSA:3.40.50.360 1 234 5.5E-74 T 26-04-2016 IPR029039 Flavoprotein-like domain RGE_RS11650 d33625ca0bdb4755ad4a8ce3b22c5d33 259 SUPERFAMILY SSF52218 1 251 1.13E-72 T 26-04-2016 IPR029039 Flavoprotein-like domain RGE_RS11650 d33625ca0bdb4755ad4a8ce3b22c5d33 259 PANTHER PTHR10204 1 219 2.7E-114 T 26-04-2016 RGE_RS11650 d33625ca0bdb4755ad4a8ce3b22c5d33 259 Pfam PF02525 Flavodoxin-like fold 1 215 1.9E-57 T 26-04-2016 IPR003680 Flavodoxin-like fold RGE_RS10290 757949d12a27fcf15a5a8dab28ce5a9f 415 Gene3D G3DSA:1.10.540.10 1 131 8.8E-33 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS10290 757949d12a27fcf15a5a8dab28ce5a9f 415 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 129 2.9E-16 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS10290 757949d12a27fcf15a5a8dab28ce5a9f 415 Gene3D G3DSA:1.20.140.10 238 403 4.9E-48 T 26-04-2016 RGE_RS10290 757949d12a27fcf15a5a8dab28ce5a9f 415 PANTHER PTHR10909:SF195 1 405 4.7E-180 T 26-04-2016 RGE_RS10290 757949d12a27fcf15a5a8dab28ce5a9f 415 PANTHER PTHR10909 1 405 4.7E-180 T 26-04-2016 RGE_RS10290 757949d12a27fcf15a5a8dab28ce5a9f 415 SUPERFAMILY SSF47203 245 400 1.55E-41 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS10290 757949d12a27fcf15a5a8dab28ce5a9f 415 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 247 396 5.1E-37 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS10290 757949d12a27fcf15a5a8dab28ce5a9f 415 Gene3D G3DSA:2.40.110.10 132 237 4.2E-38 T 26-04-2016 RGE_RS10290 757949d12a27fcf15a5a8dab28ce5a9f 415 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 133 234 1.4E-19 T 26-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RGE_RS10290 757949d12a27fcf15a5a8dab28ce5a9f 415 SUPERFAMILY SSF56645 1 260 1.57E-66 T 26-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RGE_RS13725 c5dcf1d7d73ee9de9bcd0b8d5f9e6a1a 180 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 35.463 T 26-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RGE_RS13725 c5dcf1d7d73ee9de9bcd0b8d5f9e6a1a 180 PANTHER PTHR10286 4 175 3.6E-64 T 26-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RGE_RS13725 c5dcf1d7d73ee9de9bcd0b8d5f9e6a1a 180 Pfam PF00719 Inorganic pyrophosphatase 18 173 1.1E-51 T 26-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RGE_RS13725 c5dcf1d7d73ee9de9bcd0b8d5f9e6a1a 180 Gene3D G3DSA:3.90.80.10 3 175 3.9E-59 T 26-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RGE_RS13725 c5dcf1d7d73ee9de9bcd0b8d5f9e6a1a 180 SUPERFAMILY SSF50324 3 174 8.77E-66 T 26-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RGE_RS13725 c5dcf1d7d73ee9de9bcd0b8d5f9e6a1a 180 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 26-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RGE_RS15855 6b9e586cdf3744d36040606cc402f8e9 415 Pfam PF03454 MoeA C-terminal region (domain IV) 343 409 4.2E-14 T 26-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15855 6b9e586cdf3744d36040606cc402f8e9 415 Pfam PF00994 Probable molybdopterin binding domain 188 320 7.3E-22 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS15855 6b9e586cdf3744d36040606cc402f8e9 415 SUPERFAMILY SSF63882 5 183 1.57E-46 T 26-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15855 6b9e586cdf3744d36040606cc402f8e9 415 Gene3D G3DSA:3.40.980.10 170 338 1.4E-58 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS15855 6b9e586cdf3744d36040606cc402f8e9 415 Gene3D G3DSA:2.170.190.11 53 138 3.9E-24 T 26-04-2016 RGE_RS15855 6b9e586cdf3744d36040606cc402f8e9 415 Pfam PF03453 MoeA N-terminal region (domain I and II) 8 174 1.8E-34 T 26-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15855 6b9e586cdf3744d36040606cc402f8e9 415 PANTHER PTHR10192 1 413 5.0E-137 T 26-04-2016 RGE_RS15855 6b9e586cdf3744d36040606cc402f8e9 415 Gene3D G3DSA:2.40.340.10 343 410 2.1E-13 T 26-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15855 6b9e586cdf3744d36040606cc402f8e9 415 Gene3D G3DSA:3.90.105.10 139 169 4.9E-17 T 26-04-2016 RGE_RS15855 6b9e586cdf3744d36040606cc402f8e9 415 SUPERFAMILY SSF63867 341 411 2.75E-16 T 26-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15855 6b9e586cdf3744d36040606cc402f8e9 415 SUPERFAMILY SSF53218 184 332 1.16E-38 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS15855 6b9e586cdf3744d36040606cc402f8e9 415 SMART SM00852 187 329 7.7E-40 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS09800 a015e43cde590a14030b84c43400581b 330 Gene3D G3DSA:3.40.50.1100 136 314 7.4E-73 T 26-04-2016 RGE_RS09800 a015e43cde590a14030b84c43400581b 330 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 26-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RGE_RS09800 a015e43cde590a14030b84c43400581b 330 SUPERFAMILY SSF53686 3 313 4.19E-98 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS09800 a015e43cde590a14030b84c43400581b 330 PANTHER PTHR10314 3 314 6.1E-154 T 26-04-2016 RGE_RS09800 a015e43cde590a14030b84c43400581b 330 PANTHER PTHR10314:SF110 3 314 6.1E-154 T 26-04-2016 RGE_RS09800 a015e43cde590a14030b84c43400581b 330 TIGRFAM TIGR01139 cysK: cysteine synthase A 10 313 8.6E-136 T 26-04-2016 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 RGE_RS09800 a015e43cde590a14030b84c43400581b 330 Gene3D G3DSA:3.40.50.1100 39 135 2.0E-37 T 26-04-2016 RGE_RS09800 a015e43cde590a14030b84c43400581b 330 TIGRFAM TIGR01136 cysKM: cysteine synthase 11 313 1.0E-129 T 26-04-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 RGE_RS09800 a015e43cde590a14030b84c43400581b 330 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 302 5.2E-68 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 Gene3D G3DSA:1.20.200.10 119 389 2.2E-84 T 26-04-2016 RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 SUPERFAMILY SSF48557 4 449 1.16E-100 T 26-04-2016 IPR008948 L-Aspartase-like GO:0003824 RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 PANTHER PTHR11444:SF17 5 456 9.5E-261 T 26-04-2016 RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 PRINTS PR00149 Fumarate lyase superfamily signature 162 180 9.8E-20 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 9.8E-20 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 PRINTS PR00149 Fumarate lyase superfamily signature 116 134 9.8E-20 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 9.8E-20 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 452 2.5E-121 T 26-04-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 26-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 Gene3D G3DSA:1.10.40.30 390 446 1.1E-29 T 26-04-2016 RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 Gene3D G3DSA:1.10.275.10 1 118 3.6E-43 T 26-04-2016 IPR024083 Fumarase/histidase, N-terminal RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 Pfam PF00206 Lyase 14 312 3.7E-57 T 26-04-2016 IPR022761 Fumarate lyase, N-terminal RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 PANTHER PTHR11444 5 456 9.5E-261 T 26-04-2016 IPR000362 Fumarate lyase family RGE_RS22375 2a81a807f81f14a43c0bffe067d188c0 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 446 3.3E-48 T 26-04-2016 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 RGE_RS07545 99dcdfdcec9fb930886a52c2ebb568d2 222 Pfam PF14697 4Fe-4S dicluster domain 81 135 3.0E-15 T 26-04-2016 RGE_RS07545 99dcdfdcec9fb930886a52c2ebb568d2 222 PANTHER PTHR11938 10 136 5.7E-37 T 26-04-2016 RGE_RS07545 99dcdfdcec9fb930886a52c2ebb568d2 222 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 88 99 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS07545 99dcdfdcec9fb930886a52c2ebb568d2 222 PANTHER PTHR11938:SF64 10 136 5.7E-37 T 26-04-2016 RGE_RS07545 99dcdfdcec9fb930886a52c2ebb568d2 222 Pfam PF04060 Putative Fe-S cluster 16 48 3.6E-12 T 26-04-2016 IPR007202 4Fe-4S domain GO:0051536 RGE_RS07545 99dcdfdcec9fb930886a52c2ebb568d2 222 Gene3D G3DSA:3.30.70.20 95 125 6.4E-12 T 26-04-2016 RGE_RS07545 99dcdfdcec9fb930886a52c2ebb568d2 222 Gene3D G3DSA:1.10.1060.10 18 94 8.8E-4 T 26-04-2016 RGE_RS07545 99dcdfdcec9fb930886a52c2ebb568d2 222 Gene3D G3DSA:1.10.1060.10 126 151 4.6E-5 T 26-04-2016 RGE_RS07545 99dcdfdcec9fb930886a52c2ebb568d2 222 SUPERFAMILY SSF54862 11 143 3.09E-26 T 26-04-2016 RGE_RS07545 99dcdfdcec9fb930886a52c2ebb568d2 222 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 118 129 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS07545 99dcdfdcec9fb930886a52c2ebb568d2 222 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 6 152 2.7E-56 T 26-04-2016 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 Gene3D G3DSA:1.25.40.10 366 578 2.3E-34 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 Gene3D G3DSA:1.25.40.10 711 929 7.2E-30 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 Gene3D G3DSA:1.25.40.10 323 353 5.1E-31 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 Gene3D G3DSA:1.25.40.10 47 291 5.1E-31 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SUPERFAMILY SSF48452 152 310 6.72E-19 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SUPERFAMILY SSF48452 50 186 1.54E-10 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 Pfam PF13414 TPR repeat 809 846 2.6E-7 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 Pfam PF13432 Tetratricopeptide repeat 465 526 7.0E-8 T 26-04-2016 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 Pfam PF13432 Tetratricopeptide repeat 191 246 0.0018 T 26-04-2016 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 Pfam PF13432 Tetratricopeptide repeat 533 592 0.0049 T 26-04-2016 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 Pfam PF13432 Tetratricopeptide repeat 366 427 1.1E-6 T 26-04-2016 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 PANTHER PTHR23083 473 697 1.0E-51 T 26-04-2016 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 PANTHER PTHR23083 213 296 1.0E-51 T 26-04-2016 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 PANTHER PTHR23083 832 928 1.0E-51 T 26-04-2016 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 PANTHER PTHR23083 24 108 1.0E-51 T 26-04-2016 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 Gene3D G3DSA:1.25.40.10 579 696 5.0E-11 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SUPERFAMILY SSF48452 333 587 1.39E-26 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SUPERFAMILY SSF48452 594 766 3.11E-14 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SUPERFAMILY SSF48452 789 926 6.58E-21 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 TIGRFAM TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein 29 927 1.3E-153 T 26-04-2016 IPR014266 PEP-CTERM system TPR-repeat lipoprotein, putative RGE_RS00220 14c9058a813529541bd1d41d75630617 946 Pfam PF14559 Tetratricopeptide repeat 876 941 1.8E-7 T 26-04-2016 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 900 933 180.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 665 698 60.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 494 527 0.034 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 733 766 80.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 250 283 480.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 44 77 38.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 326 359 95.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 799 832 18.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 866 899 170.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 148 181 74.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 216 249 0.11 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 562 595 390.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 631 664 460.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 393 426 29.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 78 111 170.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS00220 14c9058a813529541bd1d41d75630617 946 SMART SM00028 833 865 12.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS13635 5493b4eb4c7f6b51973f2719eccb6a1d 282 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 152 177 - T 26-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 RGE_RS13635 5493b4eb4c7f6b51973f2719eccb6a1d 282 PANTHER PTHR31480 14 282 3.3E-67 T 26-04-2016 RGE_RS13635 5493b4eb4c7f6b51973f2719eccb6a1d 282 Gene3D G3DSA:1.10.600.10 5 281 1.1E-92 T 26-04-2016 IPR008949 Isoprenoid synthase domain RGE_RS13635 5493b4eb4c7f6b51973f2719eccb6a1d 282 TIGRFAM TIGR03465 HpnD: squalene synthase HpnD 11 279 2.0E-115 T 26-04-2016 IPR017828 Squalene/phytoene synthase HpnD GO:0016117|GO:0016767 RGE_RS13635 5493b4eb4c7f6b51973f2719eccb6a1d 282 SUPERFAMILY SSF48576 5 281 4.03E-83 T 26-04-2016 IPR008949 Isoprenoid synthase domain RGE_RS13635 5493b4eb4c7f6b51973f2719eccb6a1d 282 Pfam PF00494 Squalene/phytoene synthase 14 268 3.4E-79 T 26-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 RGE_RS21310 7e37d758eaec47da65f8ce81685ab470 345 Gene3D G3DSA:3.40.50.300 6 207 3.5E-71 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21310 7e37d758eaec47da65f8ce81685ab470 345 PANTHER PTHR13748 6 345 7.2E-127 T 26-04-2016 RGE_RS21310 7e37d758eaec47da65f8ce81685ab470 345 SUPERFAMILY SSF90002 250 344 6.28E-26 T 26-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RGE_RS21310 7e37d758eaec47da65f8ce81685ab470 345 Gene3D G3DSA:3.30.1220.10 224 344 1.4E-42 T 26-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RGE_RS21310 7e37d758eaec47da65f8ce81685ab470 345 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 250 344 8.5E-23 T 26-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RGE_RS21310 7e37d758eaec47da65f8ce81685ab470 345 SUPERFAMILY SSF52540 7 206 7.1E-41 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21310 7e37d758eaec47da65f8ce81685ab470 345 SMART SM00833 250 344 2.8E-14 T 26-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RGE_RS21310 7e37d758eaec47da65f8ce81685ab470 345 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 7 186 2.9E-54 T 26-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RGE_RS21310 7e37d758eaec47da65f8ce81685ab470 345 PANTHER PTHR13748:SF43 6 345 7.2E-127 T 26-04-2016 RGE_RS06590 a7435850e20371171d6a5fc9294d103c 215 PANTHER PTHR37298 1 215 8.1E-51 T 26-04-2016 RGE_RS06590 a7435850e20371171d6a5fc9294d103c 215 Pfam PF01865 Protein of unknown function DUF47 5 213 1.2E-30 T 26-04-2016 IPR018445 Putative phosphate transport regulator RGE_RS06590 a7435850e20371171d6a5fc9294d103c 215 Gene3D G3DSA:1.20.58.220 108 206 8.4E-5 T 26-04-2016 RGE_RS06590 a7435850e20371171d6a5fc9294d103c 215 SUPERFAMILY SSF109755 20 208 2.35E-8 T 26-04-2016 RGE_RS17200 df053a6fa98732d02ebb7f856c357e34 389 PANTHER PTHR11228:SF14 23 356 3.3E-39 T 26-04-2016 RGE_RS17200 df053a6fa98732d02ebb7f856c357e34 389 Gene3D G3DSA:3.20.20.70 30 327 4.8E-36 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS17200 df053a6fa98732d02ebb7f856c357e34 389 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 259 329 5.1E-9 T 26-04-2016 IPR023885 4Fe4S-binding SPASM domain RGE_RS17200 df053a6fa98732d02ebb7f856c357e34 389 Pfam PF04055 Radical SAM superfamily 34 163 4.4E-12 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS17200 df053a6fa98732d02ebb7f856c357e34 389 PANTHER PTHR11228 23 356 3.3E-39 T 26-04-2016 RGE_RS17200 df053a6fa98732d02ebb7f856c357e34 389 SUPERFAMILY SSF102114 30 322 1.83E-35 T 26-04-2016 RGE_RS17200 df053a6fa98732d02ebb7f856c357e34 389 Pfam PF13353 4Fe-4S single cluster domain 35 137 4.4E-7 T 26-04-2016 RGE_RS08675 3914ba45cac3eee0bce066b1b6d4ccec 569 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 21 6.3E-56 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS08675 3914ba45cac3eee0bce066b1b6d4ccec 569 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 439 468 6.3E-56 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS08675 3914ba45cac3eee0bce066b1b6d4ccec 569 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 285 314 6.3E-56 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS08675 3914ba45cac3eee0bce066b1b6d4ccec 569 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 362 389 6.3E-56 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS08675 3914ba45cac3eee0bce066b1b6d4ccec 569 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 391 420 6.3E-56 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS08675 3914ba45cac3eee0bce066b1b6d4ccec 569 SMART SM00283 264 511 2.0E-95 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS08675 3914ba45cac3eee0bce066b1b6d4ccec 569 Gene3D G3DSA:1.10.287.950 279 483 7.3E-59 T 26-04-2016 RGE_RS08675 3914ba45cac3eee0bce066b1b6d4ccec 569 PANTHER PTHR32089 246 514 6.5E-131 T 26-04-2016 RGE_RS08675 3914ba45cac3eee0bce066b1b6d4ccec 569 PANTHER PTHR32089:SF63 246 514 6.5E-131 T 26-04-2016 RGE_RS08675 3914ba45cac3eee0bce066b1b6d4ccec 569 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 176 1.4E-21 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS08675 3914ba45cac3eee0bce066b1b6d4ccec 569 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 316 510 5.0E-58 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS08675 3914ba45cac3eee0bce066b1b6d4ccec 569 SUPERFAMILY SSF58104 247 513 5.62E-67 T 26-04-2016 RGE_RS11830 61cd6823392118f134c789ac73d4f6fb 87 PANTHER PTHR12735:SF24 1 86 7.6E-25 T 26-04-2016 RGE_RS11830 61cd6823392118f134c789ac73d4f6fb 87 PIRSF PIRSF003113 1 87 2.8E-23 T 26-04-2016 IPR002634 BolA protein RGE_RS11830 61cd6823392118f134c789ac73d4f6fb 87 Gene3D G3DSA:3.30.70.1500 1 81 1.7E-25 T 26-04-2016 RGE_RS11830 61cd6823392118f134c789ac73d4f6fb 87 PANTHER PTHR12735 1 86 7.6E-25 T 26-04-2016 RGE_RS11830 61cd6823392118f134c789ac73d4f6fb 87 SUPERFAMILY SSF82657 2 85 2.88E-22 T 26-04-2016 IPR002634 BolA protein RGE_RS11830 61cd6823392118f134c789ac73d4f6fb 87 Pfam PF01722 BolA-like protein 11 85 1.1E-24 T 26-04-2016 IPR002634 BolA protein RGE_RS04600 4a2cf3aec3951ada82e9c0001c6005f7 390 Gene3D G3DSA:3.30.70.270 222 381 9.6E-47 T 26-04-2016 RGE_RS04600 4a2cf3aec3951ada82e9c0001c6005f7 390 PANTHER PTHR10799 110 376 6.3E-26 T 26-04-2016 RGE_RS04600 4a2cf3aec3951ada82e9c0001c6005f7 390 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 217 380 2.1E-42 T 26-04-2016 IPR000160 GGDEF domain RGE_RS04600 4a2cf3aec3951ada82e9c0001c6005f7 390 SUPERFAMILY SSF55073 225 381 1.1E-40 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS04600 4a2cf3aec3951ada82e9c0001c6005f7 390 SMART SM00267 209 382 1.0E-40 T 26-04-2016 IPR000160 GGDEF domain RGE_RS04600 4a2cf3aec3951ada82e9c0001c6005f7 390 PANTHER PTHR10799:SF750 110 376 6.3E-26 T 26-04-2016 RGE_RS04600 4a2cf3aec3951ada82e9c0001c6005f7 390 Pfam PF00990 Diguanylate cyclase, GGDEF domain 220 378 8.0E-38 T 26-04-2016 IPR000160 GGDEF domain RGE_RS16850 6b7221829f1abfc75c2f580474cdc07f 424 Gene3D G3DSA:2.30.30.60 266 313 8.6E-14 T 26-04-2016 RGE_RS16850 6b7221829f1abfc75c2f580474cdc07f 424 PANTHER PTHR30347 95 423 1.4E-62 T 26-04-2016 RGE_RS16850 6b7221829f1abfc75c2f580474cdc07f 424 SUPERFAMILY SSF50182 250 314 1.08E-14 T 26-04-2016 IPR010920 LSM domain RGE_RS16850 6b7221829f1abfc75c2f580474cdc07f 424 Gene3D G3DSA:3.30.70.100 322 405 6.4E-13 T 26-04-2016 RGE_RS16850 6b7221829f1abfc75c2f580474cdc07f 424 SUPERFAMILY SSF82861 167 248 2.35E-11 T 26-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RGE_RS16850 6b7221829f1abfc75c2f580474cdc07f 424 Pfam PF00924 Mechanosensitive ion channel 207 407 7.4E-45 T 26-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RGE_RS16850 6b7221829f1abfc75c2f580474cdc07f 424 PANTHER PTHR30347:SF3 95 423 1.4E-62 T 26-04-2016 RGE_RS16850 6b7221829f1abfc75c2f580474cdc07f 424 SUPERFAMILY SSF82689 323 416 1.96E-20 T 26-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RGE_RS12780 bd002992f81bfb1670d690f4a3c069aa 367 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS12780 bd002992f81bfb1670d690f4a3c069aa 367 Pfam PF08402 TOBE domain 284 365 9.8E-17 T 26-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RGE_RS12780 bd002992f81bfb1670d690f4a3c069aa 367 SUPERFAMILY SSF50331 243 364 1.49E-17 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS12780 bd002992f81bfb1670d690f4a3c069aa 367 SMART SM00382 35 218 1.8E-17 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS12780 bd002992f81bfb1670d690f4a3c069aa 367 SUPERFAMILY SSF52540 11 248 8.73E-87 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12780 bd002992f81bfb1670d690f4a3c069aa 367 PANTHER PTHR24220 12 302 8.6E-168 T 26-04-2016 RGE_RS12780 bd002992f81bfb1670d690f4a3c069aa 367 Pfam PF00005 ABC transporter 27 168 2.3E-36 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS12780 bd002992f81bfb1670d690f4a3c069aa 367 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 41 365 1.5E-126 T 26-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 RGE_RS12780 bd002992f81bfb1670d690f4a3c069aa 367 PANTHER PTHR24220:SF481 12 302 8.6E-168 T 26-04-2016 RGE_RS12780 bd002992f81bfb1670d690f4a3c069aa 367 Gene3D G3DSA:3.40.50.300 8 241 8.8E-81 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01910 f5fd09b0f1f7f307c6380cadb9084191 589 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 92 260 2.5E-49 T 26-04-2016 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.- RGE_RS01910 f5fd09b0f1f7f307c6380cadb9084191 589 SUPERFAMILY SSF53474 216 509 5.23E-33 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS01910 f5fd09b0f1f7f307c6380cadb9084191 589 PANTHER PTHR36837:SF2 11 586 5.2E-175 T 26-04-2016 RGE_RS01910 f5fd09b0f1f7f307c6380cadb9084191 589 PANTHER PTHR36837 11 586 5.2E-175 T 26-04-2016 RGE_RS01910 f5fd09b0f1f7f307c6380cadb9084191 589 Pfam PF12551 Poly-beta-hydroxybutyrate polymerase N terminal 22 61 2.0E-14 T 26-04-2016 IPR022211 Poly-beta-hydroxybutyrate polymerase N-terminal RGE_RS01910 f5fd09b0f1f7f307c6380cadb9084191 589 Gene3D G3DSA:3.40.50.1820 177 555 2.2E-24 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS10300 e6f7449104a575b9482c46dcb0ace284 376 PANTHER PTHR10909 1 376 3.3E-162 T 26-04-2016 RGE_RS10300 e6f7449104a575b9482c46dcb0ace284 376 SUPERFAMILY SSF56645 2 240 4.58E-79 T 26-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RGE_RS10300 e6f7449104a575b9482c46dcb0ace284 376 Gene3D G3DSA:2.40.110.10 119 215 1.6E-38 T 26-04-2016 RGE_RS10300 e6f7449104a575b9482c46dcb0ace284 376 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 215 7.2E-25 T 26-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RGE_RS10300 e6f7449104a575b9482c46dcb0ace284 376 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 26-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RGE_RS10300 e6f7449104a575b9482c46dcb0ace284 376 Gene3D G3DSA:1.20.140.10 216 375 5.5E-71 T 26-04-2016 RGE_RS10300 e6f7449104a575b9482c46dcb0ace284 376 PANTHER PTHR10909:SF305 1 376 3.3E-162 T 26-04-2016 RGE_RS10300 e6f7449104a575b9482c46dcb0ace284 376 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 1.2E-49 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS10300 e6f7449104a575b9482c46dcb0ace284 376 SUPERFAMILY SSF47203 226 375 7.89E-59 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS10300 e6f7449104a575b9482c46dcb0ace284 376 Gene3D G3DSA:1.10.540.10 3 116 2.5E-38 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS10300 e6f7449104a575b9482c46dcb0ace284 376 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 115 4.4E-34 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS13195 e919ed67441f1ca5fdd5da341be86980 352 SUPERFAMILY SSF102114 45 282 4.45E-17 T 26-04-2016 RGE_RS13195 e919ed67441f1ca5fdd5da341be86980 352 SMART SM00729 63 288 4.0E-9 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS13195 e919ed67441f1ca5fdd5da341be86980 352 Gene3D G3DSA:3.20.20.70 68 251 7.5E-12 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS13195 e919ed67441f1ca5fdd5da341be86980 352 Pfam PF04055 Radical SAM superfamily 68 245 5.5E-14 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS13195 e919ed67441f1ca5fdd5da341be86980 352 PANTHER PTHR11228:SF26 10 312 4.9E-89 T 26-04-2016 RGE_RS13195 e919ed67441f1ca5fdd5da341be86980 352 PANTHER PTHR11228 10 312 4.9E-89 T 26-04-2016 RGE_RS04985 92313a71e2cfe41081c69a4b9ae872f5 324 PANTHER PTHR13773 50 320 1.1E-44 T 26-04-2016 RGE_RS04985 92313a71e2cfe41081c69a4b9ae872f5 324 PANTHER PTHR13773:SF11 50 320 1.1E-44 T 26-04-2016 RGE_RS04985 92313a71e2cfe41081c69a4b9ae872f5 324 Pfam PF01148 Cytidylyltransferase family 56 316 2.6E-16 T 26-04-2016 RGE_RS20055 b4a2d843e2af5d9cca7f20972b278b71 202 SUPERFAMILY SSF88946 2 98 3.61E-27 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20055 b4a2d843e2af5d9cca7f20972b278b71 202 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 189 1.0E-29 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20055 b4a2d843e2af5d9cca7f20972b278b71 202 Pfam PF08281 Sigma-70, region 4 135 185 2.0E-18 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20055 b4a2d843e2af5d9cca7f20972b278b71 202 Gene3D G3DSA:1.10.1740.10 3 111 3.7E-32 T 26-04-2016 RGE_RS20055 b4a2d843e2af5d9cca7f20972b278b71 202 PANTHER PTHR30173:SF1 1 191 2.3E-44 T 26-04-2016 RGE_RS20055 b4a2d843e2af5d9cca7f20972b278b71 202 Gene3D G3DSA:1.10.10.10 128 192 4.6E-26 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS20055 b4a2d843e2af5d9cca7f20972b278b71 202 SUPERFAMILY SSF88659 129 190 6.17E-18 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20055 b4a2d843e2af5d9cca7f20972b278b71 202 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 194 5.5E-79 T 26-04-2016 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20055 b4a2d843e2af5d9cca7f20972b278b71 202 Pfam PF04542 Sigma-70 region 2 25 90 3.3E-15 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20055 b4a2d843e2af5d9cca7f20972b278b71 202 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 78 - T 26-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS20055 b4a2d843e2af5d9cca7f20972b278b71 202 PANTHER PTHR30173 1 191 2.3E-44 T 26-04-2016 RGE_RS14235 5d7f36ca06299c7535f1fb9b76b701b3 408 Gene3D G3DSA:1.10.540.10 1 134 3.2E-37 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS14235 5d7f36ca06299c7535f1fb9b76b701b3 408 PANTHER PTHR10909 1 402 4.7E-234 T 26-04-2016 RGE_RS14235 5d7f36ca06299c7535f1fb9b76b701b3 408 PANTHER PTHR10909:SF282 1 402 4.7E-234 T 26-04-2016 RGE_RS14235 5d7f36ca06299c7535f1fb9b76b701b3 408 SUPERFAMILY SSF47203 247 404 4.51E-46 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS14235 5d7f36ca06299c7535f1fb9b76b701b3 408 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 136 233 3.2E-20 T 26-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RGE_RS14235 5d7f36ca06299c7535f1fb9b76b701b3 408 SUPERFAMILY SSF56645 1 262 1.13E-68 T 26-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RGE_RS14235 5d7f36ca06299c7535f1fb9b76b701b3 408 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 132 4.4E-18 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS14235 5d7f36ca06299c7535f1fb9b76b701b3 408 Gene3D G3DSA:1.20.140.10 239 401 2.4E-48 T 26-04-2016 RGE_RS14235 5d7f36ca06299c7535f1fb9b76b701b3 408 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 249 397 4.9E-36 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS14235 5d7f36ca06299c7535f1fb9b76b701b3 408 Gene3D G3DSA:2.40.110.10 136 238 5.3E-39 T 26-04-2016 RGE_RS18750 2c1f2d4e0c5df681424ecc6e626c960a 414 Gene3D G3DSA:3.40.50.300 4 209 2.0E-73 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18750 2c1f2d4e0c5df681424ecc6e626c960a 414 Pfam PF00270 DEAD/DEAH box helicase 27 198 4.2E-44 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS18750 2c1f2d4e0c5df681424ecc6e626c960a 414 SMART SM00487 22 226 4.5E-56 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS18750 2c1f2d4e0c5df681424ecc6e626c960a 414 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 156 164 - T 26-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RGE_RS18750 2c1f2d4e0c5df681424ecc6e626c960a 414 SUPERFAMILY SSF52540 77 364 1.06E-67 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18750 2c1f2d4e0c5df681424ecc6e626c960a 414 PANTHER PTHR24031 5 373 5.7E-149 T 26-04-2016 RGE_RS18750 2c1f2d4e0c5df681424ecc6e626c960a 414 SMART SM00490 262 343 5.3E-29 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS18750 2c1f2d4e0c5df681424ecc6e626c960a 414 Pfam PF00271 Helicase conserved C-terminal domain 240 343 1.3E-23 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS18750 2c1f2d4e0c5df681424ecc6e626c960a 414 Gene3D G3DSA:3.40.50.300 210 379 4.3E-46 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04810 fbfc48890255aa126a4cdebbba0e0acd 221 PANTHER PTHR30055 10 205 1.3E-30 T 26-04-2016 RGE_RS04810 fbfc48890255aa126a4cdebbba0e0acd 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 1.0E-9 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS04810 fbfc48890255aa126a4cdebbba0e0acd 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 1.0E-9 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS04810 fbfc48890255aa126a4cdebbba0e0acd 221 PANTHER PTHR30055:SF92 10 205 1.3E-30 T 26-04-2016 RGE_RS04810 fbfc48890255aa126a4cdebbba0e0acd 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 72 3.1E-15 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS04810 fbfc48890255aa126a4cdebbba0e0acd 221 SUPERFAMILY SSF46689 13 93 3.99E-16 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04810 fbfc48890255aa126a4cdebbba0e0acd 221 Gene3D G3DSA:1.10.357.10 15 191 5.6E-29 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS14525 eea6cdebfe7b6fd4679388006e34f97f 512 Pfam PF00501 AMP-binding enzyme 7 407 7.3E-78 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS14525 eea6cdebfe7b6fd4679388006e34f97f 512 Gene3D G3DSA:3.40.50.980 167 318 6.5E-32 T 26-04-2016 RGE_RS14525 eea6cdebfe7b6fd4679388006e34f97f 512 Gene3D G3DSA:3.30.300.30 402 501 8.7E-30 T 26-04-2016 RGE_RS14525 eea6cdebfe7b6fd4679388006e34f97f 512 PANTHER PTHR24096 7 500 5.2E-124 T 26-04-2016 RGE_RS14525 eea6cdebfe7b6fd4679388006e34f97f 512 SUPERFAMILY SSF56801 4 503 1.57E-131 T 26-04-2016 RGE_RS14525 eea6cdebfe7b6fd4679388006e34f97f 512 ProSitePatterns PS00455 Putative AMP-binding domain signature. 161 172 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS14525 eea6cdebfe7b6fd4679388006e34f97f 512 PANTHER PTHR24096:SF232 7 500 5.2E-124 T 26-04-2016 RGE_RS14525 eea6cdebfe7b6fd4679388006e34f97f 512 Pfam PF13193 AMP-binding enzyme C-terminal domain 417 491 1.2E-20 T 26-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RGE_RS14525 eea6cdebfe7b6fd4679388006e34f97f 512 Gene3D G3DSA:2.30.38.10 326 397 1.3E-21 T 26-04-2016 RGE_RS14525 eea6cdebfe7b6fd4679388006e34f97f 512 Gene3D G3DSA:3.40.50.980 4 166 4.0E-25 T 26-04-2016 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 Pfam PF00696 Amino acid kinase family 10 237 3.5E-42 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 PANTHER PTHR11063:SF6 9 372 7.4E-109 T 26-04-2016 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 SUPERFAMILY SSF88697 281 371 2.71E-23 T 26-04-2016 IPR015947 PUA-like domain RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 PIRSF PIRSF000729 4 372 9.7E-129 T 26-04-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 PANTHER PTHR11063 9 372 7.4E-109 T 26-04-2016 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 Pfam PF01472 PUA domain 281 354 1.4E-22 T 26-04-2016 IPR002478 PUA domain GO:0003723 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 ProSitePatterns PS00902 Glutamate 5-kinase signature. 211 228 - T 26-04-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 SMART SM00359 281 364 5.9E-16 T 26-04-2016 IPR002478 PUA domain GO:0003723 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 Gene3D G3DSA:2.30.130.10 278 370 1.4E-26 T 26-04-2016 IPR015947 PUA-like domain RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 PRINTS PR00474 Glutamate 5-kinase family signature 120 141 2.1E-48 T 26-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 PRINTS PR00474 Glutamate 5-kinase family signature 80 108 2.1E-48 T 26-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 PRINTS PR00474 Glutamate 5-kinase family signature 213 233 2.1E-48 T 26-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 PRINTS PR00474 Glutamate 5-kinase family signature 152 179 2.1E-48 T 26-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 PRINTS PR00474 Glutamate 5-kinase family signature 46 60 2.1E-48 T 26-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 TIGRFAM TIGR01027 proB: glutamate 5-kinase 9 370 1.6E-128 T 26-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 SUPERFAMILY SSF53633 9 258 1.02E-68 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 Gene3D G3DSA:3.40.1160.10 5 259 5.1E-60 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS20730 38cd1c1c0cc673b35c08cb700bc38527 372 Hamap MF_00456 Glutamate 5-kinase [proB]. 9 262 35.424 T 26-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RGE_RS09045 9b39cd59db829e960b7564d686efa480 305 Pfam PF12697 Alpha/beta hydrolase family 40 298 1.2E-23 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS09045 9b39cd59db829e960b7564d686efa480 305 Gene3D G3DSA:3.40.50.1820 14 305 3.5E-60 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS09045 9b39cd59db829e960b7564d686efa480 305 PANTHER PTHR10992 16 155 1.7E-36 T 26-04-2016 RGE_RS09045 9b39cd59db829e960b7564d686efa480 305 PANTHER PTHR10992 197 305 1.7E-36 T 26-04-2016 RGE_RS09045 9b39cd59db829e960b7564d686efa480 305 SUPERFAMILY SSF53474 12 305 8.9E-52 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS09045 9b39cd59db829e960b7564d686efa480 305 PRINTS PR00412 Epoxide hydrolase signature 127 140 1.4E-10 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS09045 9b39cd59db829e960b7564d686efa480 305 PRINTS PR00412 Epoxide hydrolase signature 67 82 1.4E-10 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS09045 9b39cd59db829e960b7564d686efa480 305 PRINTS PR00412 Epoxide hydrolase signature 281 303 1.4E-10 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS09045 9b39cd59db829e960b7564d686efa480 305 PRINTS PR00412 Epoxide hydrolase signature 44 62 1.4E-10 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS09045 9b39cd59db829e960b7564d686efa480 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 113 126 6.5E-9 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS09045 9b39cd59db829e960b7564d686efa480 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 67 82 6.5E-9 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS09045 9b39cd59db829e960b7564d686efa480 305 PRINTS PR00111 Alpha/beta hydrolase fold signature 127 140 6.5E-9 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS05905 cd52f338bea7e1946dfb206dd760460f 128 PANTHER PTHR34109 8 125 5.7E-27 T 26-04-2016 RGE_RS05905 cd52f338bea7e1946dfb206dd760460f 128 PANTHER PTHR34109:SF1 8 125 5.7E-27 T 26-04-2016 RGE_RS05905 cd52f338bea7e1946dfb206dd760460f 128 Gene3D G3DSA:3.10.180.10 11 122 6.5E-22 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS05905 cd52f338bea7e1946dfb206dd760460f 128 SUPERFAMILY SSF54593 7 121 4.43E-26 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS05905 cd52f338bea7e1946dfb206dd760460f 128 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 118 7.1E-7 T 26-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RGE_RS07385 bd38f75cbc33a8b4d1bd45f161f63772 619 SUPERFAMILY SSF56935 29 615 1.81E-105 T 26-04-2016 RGE_RS07385 bd38f75cbc33a8b4d1bd45f161f63772 619 Pfam PF07715 TonB-dependent Receptor Plug Domain 44 148 2.0E-25 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS07385 bd38f75cbc33a8b4d1bd45f161f63772 619 Pfam PF00593 TonB dependent receptor 391 616 2.7E-27 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS07385 bd38f75cbc33a8b4d1bd45f161f63772 619 Gene3D G3DSA:2.40.170.20 155 616 8.4E-75 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS07385 bd38f75cbc33a8b4d1bd45f161f63772 619 Gene3D G3DSA:2.170.130.10 20 154 2.2E-36 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS07385 bd38f75cbc33a8b4d1bd45f161f63772 619 PANTHER PTHR32552 29 617 4.2E-41 T 26-04-2016 RGE_RS07385 bd38f75cbc33a8b4d1bd45f161f63772 619 PANTHER PTHR32552:SF15 29 617 4.2E-41 T 26-04-2016 RGE_RS22845 551cd3b3a028dbc3948b96d04d0ad312 347 PANTHER PTHR30465:SF2 89 345 3.5E-78 T 26-04-2016 RGE_RS22845 551cd3b3a028dbc3948b96d04d0ad312 347 PANTHER PTHR30465:SF2 9 68 3.5E-78 T 26-04-2016 RGE_RS22845 551cd3b3a028dbc3948b96d04d0ad312 347 SUPERFAMILY SSF161098 139 327 7.59E-25 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS22845 551cd3b3a028dbc3948b96d04d0ad312 347 PANTHER PTHR30465 89 345 3.5E-78 T 26-04-2016 RGE_RS22845 551cd3b3a028dbc3948b96d04d0ad312 347 PANTHER PTHR30465 9 68 3.5E-78 T 26-04-2016 RGE_RS22845 551cd3b3a028dbc3948b96d04d0ad312 347 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 18 54 4.5E-6 T 26-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RGE_RS22845 551cd3b3a028dbc3948b96d04d0ad312 347 Gene3D G3DSA:1.10.3720.10 136 341 1.1E-27 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS22845 551cd3b3a028dbc3948b96d04d0ad312 347 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 160 344 3.4E-28 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS19995 470176084e1c62fa28fd48c05d2466bb 349 PANTHER PTHR30480:SF7 7 321 4.5E-103 T 26-04-2016 RGE_RS19995 470176084e1c62fa28fd48c05d2466bb 349 SUPERFAMILY SSF51445 6 321 1.9E-76 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS19995 470176084e1c62fa28fd48c05d2466bb 349 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 6 349 48.952 T 26-04-2016 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|UniPathway: UPA00544 RGE_RS19995 470176084e1c62fa28fd48c05d2466bb 349 Gene3D G3DSA:3.20.20.300 7 320 3.5E-88 T 26-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RGE_RS19995 470176084e1c62fa28fd48c05d2466bb 349 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 11 315 8.6E-71 T 26-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RGE_RS19995 470176084e1c62fa28fd48c05d2466bb 349 PANTHER PTHR30480 7 321 4.5E-103 T 26-04-2016 RGE_RS14280 1a27dc8101ee4a2626ccd320b1794962 159 PIRSF PIRSF021700 1 159 1.6E-63 T 26-04-2016 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase RGE_RS14280 1a27dc8101ee4a2626ccd320b1794962 159 PANTHER PTHR33990 2 159 9.0E-97 T 26-04-2016 RGE_RS14280 1a27dc8101ee4a2626ccd320b1794962 159 SUPERFAMILY SSF54593 4 157 1.03E-46 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS14280 1a27dc8101ee4a2626ccd320b1794962 159 Gene3D G3DSA:3.10.180.10 3 131 2.0E-38 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS14280 1a27dc8101ee4a2626ccd320b1794962 159 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 119 1.8E-42 T 26-04-2016 IPR028973 3-demethylubiquinone-9 3-methyltransferase RGE_RS14280 1a27dc8101ee4a2626ccd320b1794962 159 PANTHER PTHR33990:SF3 2 159 9.0E-97 T 26-04-2016 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 171 3.1E-14 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 PANTHER PTHR32089:SF63 71 515 6.4E-152 T 26-04-2016 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 Gene3D G3DSA:1.10.287.950 279 484 3.1E-61 T 26-04-2016 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 SMART SM00283 265 512 1.1E-92 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 Pfam PF00672 HAMP domain 192 261 4.5E-14 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 SUPERFAMILY SSF58104 239 513 2.35E-73 T 26-04-2016 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 319 511 1.4E-61 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 SMART SM00304 211 264 7.6E-7 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 9.6E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 9.6E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 9.6E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 9.6E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 9.6E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03875 b82e1a6ee8c4ebd325cc8ced274d8401 521 PANTHER PTHR32089 71 515 6.4E-152 T 26-04-2016 RGE_RS19595 f740dd0e07c1801703325acf38064a7c 747 PANTHER PTHR24221 139 729 3.6E-231 T 26-04-2016 RGE_RS19595 f740dd0e07c1801703325acf38064a7c 747 SUPERFAMILY SSF52540 477 720 7.35E-93 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19595 f740dd0e07c1801703325acf38064a7c 747 ProSitePatterns PS00211 ABC transporters family signature. 622 636 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS19595 f740dd0e07c1801703325acf38064a7c 747 SMART SM00382 510 696 3.0E-20 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS19595 f740dd0e07c1801703325acf38064a7c 747 Gene3D G3DSA:3.40.50.300 486 713 4.2E-85 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19595 f740dd0e07c1801703325acf38064a7c 747 Pfam PF00005 ABC transporter 503 650 3.1E-32 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS19595 f740dd0e07c1801703325acf38064a7c 747 SUPERFAMILY SSF90123 151 465 4.58E-77 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS19595 f740dd0e07c1801703325acf38064a7c 747 Pfam PF00664 ABC transporter transmembrane region 163 437 3.3E-42 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS19595 f740dd0e07c1801703325acf38064a7c 747 Gene3D G3DSA:1.20.1560.10 151 465 1.6E-82 T 26-04-2016 RGE_RS10515 6913308331bb8644fa21a5d895bb4fff 285 PANTHER PTHR30007 2 256 6.0E-59 T 26-04-2016 RGE_RS10515 6913308331bb8644fa21a5d895bb4fff 285 Gene3D G3DSA:3.20.20.140 159 258 2.4E-34 T 26-04-2016 RGE_RS10515 6913308331bb8644fa21a5d895bb4fff 285 Gene3D G3DSA:3.20.20.140 4 89 2.4E-34 T 26-04-2016 RGE_RS10515 6913308331bb8644fa21a5d895bb4fff 285 Pfam PF02811 PHP domain 7 159 9.2E-9 T 26-04-2016 IPR004013 PHP domain GO:0003824 RGE_RS10515 6913308331bb8644fa21a5d895bb4fff 285 PANTHER PTHR30007:SF4 2 256 6.0E-59 T 26-04-2016 RGE_RS10515 6913308331bb8644fa21a5d895bb4fff 285 SUPERFAMILY SSF89550 4 84 8.24E-44 T 26-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RGE_RS10515 6913308331bb8644fa21a5d895bb4fff 285 SUPERFAMILY SSF89550 167 278 8.24E-44 T 26-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RGE_RS10515 6913308331bb8644fa21a5d895bb4fff 285 SMART SM00481 6 71 2.0E-13 T 26-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 RGE_RS19505 92ab3e195b0586af07cd89d03a6eee6e 261 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 18 258 1.6E-82 T 26-04-2016 IPR014308 Xanthine dehydrogenase accessory protein XdhC RGE_RS19505 92ab3e195b0586af07cd89d03a6eee6e 261 Pfam PF02625 XdhC and CoxI family 10 67 2.4E-15 T 26-04-2016 IPR003777 XdhC- CoxI RGE_RS19505 92ab3e195b0586af07cd89d03a6eee6e 261 PANTHER PTHR30388:SF5 1 259 8.5E-59 T 26-04-2016 RGE_RS19505 92ab3e195b0586af07cd89d03a6eee6e 261 Pfam PF13478 XdhC Rossmann domain 115 257 1.2E-35 T 26-04-2016 IPR027051 XdhC Rossmann domain RGE_RS19505 92ab3e195b0586af07cd89d03a6eee6e 261 PANTHER PTHR30388 1 259 8.5E-59 T 26-04-2016 RGE_RS21170 53c38ada49b8f508f7c0e4fe43ba0d7e 198 Pfam PF13548 Domain of unknown function (DUF4126) 10 179 9.9E-48 T 26-04-2016 IPR025196 Domain of unknown function DUF4126 RGE_RS09565 6c5ceba92c43b2d87920be6eed7052cd 555 PRINTS PR01009 Flagellar M-ring protein signature 349 373 3.2E-27 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS09565 6c5ceba92c43b2d87920be6eed7052cd 555 PRINTS PR01009 Flagellar M-ring protein signature 161 175 3.2E-27 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS09565 6c5ceba92c43b2d87920be6eed7052cd 555 PRINTS PR01009 Flagellar M-ring protein signature 129 147 3.2E-27 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS09565 6c5ceba92c43b2d87920be6eed7052cd 555 PRINTS PR01009 Flagellar M-ring protein signature 205 223 3.2E-27 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS09565 6c5ceba92c43b2d87920be6eed7052cd 555 PRINTS PR01009 Flagellar M-ring protein signature 277 295 3.2E-27 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS09565 6c5ceba92c43b2d87920be6eed7052cd 555 Pfam PF08345 Flagellar M-ring protein C-terminal 264 420 1.7E-33 T 26-04-2016 IPR013556 Flagellar M-ring C-terminal RGE_RS09565 6c5ceba92c43b2d87920be6eed7052cd 555 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 35 420 1.3E-61 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS09565 6c5ceba92c43b2d87920be6eed7052cd 555 PIRSF PIRSF004862 26 552 1.6E-106 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS09565 6c5ceba92c43b2d87920be6eed7052cd 555 Pfam PF01514 Secretory protein of YscJ/FliF family 38 229 7.1E-57 T 26-04-2016 IPR006182 Secretory protein YscJ/FliF RGE_RS09565 6c5ceba92c43b2d87920be6eed7052cd 555 PANTHER PTHR30046:SF0 35 553 9.5E-109 T 26-04-2016 RGE_RS09565 6c5ceba92c43b2d87920be6eed7052cd 555 PANTHER PTHR30046 35 553 9.5E-109 T 26-04-2016 RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 SUPERFAMILY SSF52540 103 267 1.41E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 SUPERFAMILY SSF52540 295 530 1.41E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 PANTHER PTHR10887:SF351 103 249 1.0E-50 T 26-04-2016 RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 22 549 1.0E-136 T 26-04-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 Pfam PF13604 AAA domain 105 260 3.4E-30 T 26-04-2016 RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 Gene3D G3DSA:3.40.50.300 103 240 5.5E-17 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 PANTHER PTHR10887 103 249 1.0E-50 T 26-04-2016 RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 1 549 47.238 T 26-04-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 Gene3D G3DSA:3.40.50.300 299 325 3.3E-41 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 Gene3D G3DSA:3.40.50.300 364 411 3.3E-41 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 Gene3D G3DSA:3.40.50.300 241 255 3.3E-41 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 Gene3D G3DSA:3.40.50.300 466 536 3.3E-41 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18335 481695e0a93e9d7981f91e9646b1314d 555 Pfam PF13538 UvrD-like helicase C-terminal domain 480 524 3.1E-11 T 26-04-2016 IPR027785 UvrD-like helicase C-terminal domain RGE_RS04200 7c95b3ff5643f2c97b5c40f03c4b3f8c 421 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 419 2.8E-173 T 26-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04200 7c95b3ff5643f2c97b5c40f03c4b3f8c 421 PANTHER PTHR21090:SF19 1 420 7.1E-180 T 26-04-2016 RGE_RS04200 7c95b3ff5643f2c97b5c40f03c4b3f8c 421 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 420 45.975 T 26-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04200 7c95b3ff5643f2c97b5c40f03c4b3f8c 421 SUPERFAMILY SSF55205 1 420 2.13E-137 T 26-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RGE_RS04200 7c95b3ff5643f2c97b5c40f03c4b3f8c 421 PANTHER PTHR21090 1 420 7.1E-180 T 26-04-2016 RGE_RS04200 7c95b3ff5643f2c97b5c40f03c4b3f8c 421 Gene3D G3DSA:3.65.10.10 224 420 1.5E-57 T 26-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RGE_RS04200 7c95b3ff5643f2c97b5c40f03c4b3f8c 421 Gene3D G3DSA:3.65.10.10 21 223 7.0E-69 T 26-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RGE_RS04200 7c95b3ff5643f2c97b5c40f03c4b3f8c 421 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 410 1.6E-102 T 26-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 Gene3D G3DSA:3.20.70.20 13 211 4.5E-128 T 26-04-2016 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 Gene3D G3DSA:3.20.70.20 539 584 4.5E-128 T 26-04-2016 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 Gene3D G3DSA:3.20.70.20 255 413 4.5E-128 T 26-04-2016 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 Gene3D G3DSA:3.20.70.20 448 495 4.5E-128 T 26-04-2016 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 PANTHER PTHR11573:SF3 13 826 2.6E-195 T 26-04-2016 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 Pfam PF02867 Ribonucleotide reductase, barrel domain 89 580 1.6E-138 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 30 588 1.2E-175 T 26-04-2016 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 SUPERFAMILY SSF51998 448 605 6.41E-171 T 26-04-2016 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 SUPERFAMILY SSF51998 255 413 6.41E-171 T 26-04-2016 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 SUPERFAMILY SSF51998 12 211 6.41E-171 T 26-04-2016 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 PANTHER PTHR11573 13 826 2.6E-195 T 26-04-2016 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 PRINTS PR01183 Ribonucleotide reductase large chain signature 170 189 4.3E-27 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 PRINTS PR01183 Ribonucleotide reductase large chain signature 393 416 4.3E-27 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 PRINTS PR01183 Ribonucleotide reductase large chain signature 289 300 4.3E-27 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 PRINTS PR01183 Ribonucleotide reductase large chain signature 327 350 4.3E-27 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 PRINTS PR01183 Ribonucleotide reductase large chain signature 448 475 4.3E-27 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS11210 ecad94a3b50e26c87296d9e27a078bf6 826 PRINTS PR01183 Ribonucleotide reductase large chain signature 365 387 4.3E-27 T 26-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 Pfam PF00593 TonB dependent receptor 511 891 3.9E-23 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 Gene3D G3DSA:2.170.130.10 46 159 3.3E-15 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 PANTHER PTHR32552 875 894 1.5E-19 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 PANTHER PTHR32552 337 469 1.5E-19 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 PANTHER PTHR32552 720 767 1.5E-19 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 PANTHER PTHR32552 801 857 1.5E-19 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 PANTHER PTHR32552 574 673 1.5E-19 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 PANTHER PTHR32552 492 545 1.5E-19 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 PANTHER PTHR32552 7 308 1.5E-19 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 SUPERFAMILY SSF56935 878 893 7.94E-96 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 SUPERFAMILY SSF56935 501 540 7.94E-96 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 SUPERFAMILY SSF56935 718 764 7.94E-96 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 SUPERFAMILY SSF56935 807 850 7.94E-96 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 SUPERFAMILY SSF56935 11 472 7.94E-96 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 SUPERFAMILY SSF56935 578 669 7.94E-96 T 26-04-2016 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 Gene3D G3DSA:2.40.170.20 579 666 3.7E-98 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 Gene3D G3DSA:2.40.170.20 160 545 3.7E-98 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 Gene3D G3DSA:2.40.170.20 806 893 3.7E-98 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 Gene3D G3DSA:2.40.170.20 709 773 3.7E-98 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS09970 ff8f69cb9b45d1e5a6ba34947dbe6439 898 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 160 4.2E-12 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS16145 f6e72d9c7a22f27c3a4a9f94e821f15a 261 PANTHER PTHR24220:SF560 16 256 1.7E-161 T 26-04-2016 RGE_RS16145 f6e72d9c7a22f27c3a4a9f94e821f15a 261 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS16145 f6e72d9c7a22f27c3a4a9f94e821f15a 261 Pfam PF00005 ABC transporter 30 185 4.2E-33 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS16145 f6e72d9c7a22f27c3a4a9f94e821f15a 261 SUPERFAMILY SSF52540 14 247 1.3E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16145 f6e72d9c7a22f27c3a4a9f94e821f15a 261 Gene3D G3DSA:3.40.50.300 8 252 1.9E-70 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16145 f6e72d9c7a22f27c3a4a9f94e821f15a 261 PANTHER PTHR24220 16 256 1.7E-161 T 26-04-2016 RGE_RS16145 f6e72d9c7a22f27c3a4a9f94e821f15a 261 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 15 261 2.1E-120 T 26-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 RGE_RS16145 f6e72d9c7a22f27c3a4a9f94e821f15a 261 SMART SM00382 39 249 2.2E-10 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21365 f8111cc2d6b5ad60c1e3880a415bf21a 465 PANTHER PTHR30203 25 458 1.9E-91 T 26-04-2016 RGE_RS21365 f8111cc2d6b5ad60c1e3880a415bf21a 465 Gene3D G3DSA:1.20.1600.10 51 460 1.8E-104 T 26-04-2016 RGE_RS21365 f8111cc2d6b5ad60c1e3880a415bf21a 465 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 13 457 8.0E-96 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS21365 f8111cc2d6b5ad60c1e3880a415bf21a 465 PANTHER PTHR30203:SF3 25 458 1.9E-91 T 26-04-2016 RGE_RS21365 f8111cc2d6b5ad60c1e3880a415bf21a 465 SUPERFAMILY SSF56954 8 459 2.35E-100 T 26-04-2016 RGE_RS21365 f8111cc2d6b5ad60c1e3880a415bf21a 465 Pfam PF02321 Outer membrane efflux protein 274 452 6.2E-28 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS21365 f8111cc2d6b5ad60c1e3880a415bf21a 465 Pfam PF02321 Outer membrane efflux protein 66 245 7.6E-25 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS15125 4dfaf1ada6b9d0858d7b7b2bb3813e7b 487 Gene3D G3DSA:2.130.10.80 27 106 2.1E-4 T 26-04-2016 IPR015916 Galactose oxidase, beta-propeller RGE_RS22650 03f349a02d7cb6eb81bc20a904b85834 541 PANTHER PTHR22726 12 370 1.8E-60 T 26-04-2016 RGE_RS22650 03f349a02d7cb6eb81bc20a904b85834 541 PANTHER PTHR22726:SF10 12 370 1.8E-60 T 26-04-2016 RGE_RS22650 03f349a02d7cb6eb81bc20a904b85834 541 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 14 518 27.311 T 26-04-2016 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 RGE_RS22650 03f349a02d7cb6eb81bc20a904b85834 541 Pfam PF01435 Peptidase family M48 102 273 3.5E-30 T 26-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RGE_RS22650 03f349a02d7cb6eb81bc20a904b85834 541 Gene3D G3DSA:3.30.2010.10 77 163 8.1E-16 T 26-04-2016 RGE_RS16860 81f4cdb33ab07cabc67076df479dd1ee 308 PANTHER PTHR11603:SF155 3 308 2.0E-136 T 26-04-2016 RGE_RS16860 81f4cdb33ab07cabc67076df479dd1ee 308 Gene3D G3DSA:1.10.8.300 200 288 5.2E-24 T 26-04-2016 RGE_RS16860 81f4cdb33ab07cabc67076df479dd1ee 308 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 39 169 1.0E-61 T 26-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RGE_RS16860 81f4cdb33ab07cabc67076df479dd1ee 308 SUPERFAMILY SSF52540 14 283 1.98E-40 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16860 81f4cdb33ab07cabc67076df479dd1ee 308 Gene3D G3DSA:3.40.50.300 22 185 1.6E-41 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16860 81f4cdb33ab07cabc67076df479dd1ee 308 SMART SM00382 36 177 3.3E-5 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS16860 81f4cdb33ab07cabc67076df479dd1ee 308 PIRSF PIRSF002849 3 308 2.6E-118 T 26-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted RGE_RS16860 81f4cdb33ab07cabc67076df479dd1ee 308 PANTHER PTHR11603 3 308 2.0E-136 T 26-04-2016 RGE_RS10015 5254dd607ae582c75ee8d423d4e732c0 79 SMART SM00834 1 42 5.0E-9 T 26-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RGE_RS10015 5254dd607ae582c75ee8d423d4e732c0 79 Pfam PF09723 Zinc ribbon domain 1 39 5.1E-11 T 26-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RGE_RS10015 5254dd607ae582c75ee8d423d4e732c0 79 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 48 3.2E-12 T 26-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RGE_RS13625 6b652b7283d00cee6837d17cdf65f121 362 PANTHER PTHR30469 1 359 5.5E-66 T 26-04-2016 RGE_RS13625 6b652b7283d00cee6837d17cdf65f121 362 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 36 355 1.5E-64 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS13625 6b652b7283d00cee6837d17cdf65f121 362 SUPERFAMILY SSF111369 49 263 6.41E-19 T 26-04-2016 RGE_RS13625 6b652b7283d00cee6837d17cdf65f121 362 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 263 4.4E-12 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS13625 6b652b7283d00cee6837d17cdf65f121 362 Gene3D G3DSA:2.40.50.100 63 92 1.5E-10 T 26-04-2016 RGE_RS13625 6b652b7283d00cee6837d17cdf65f121 362 Gene3D G3DSA:2.40.50.100 167 198 1.5E-10 T 26-04-2016 RGE_RS03330 6f0778e2b7a3797e9e40114f092ddbfc 557 PANTHER PTHR34597 64 557 2.2E-88 T 26-04-2016 RGE_RS03330 6f0778e2b7a3797e9e40114f092ddbfc 557 Gene3D G3DSA:2.40.160.50 184 557 1.5E-59 T 26-04-2016 RGE_RS03330 6f0778e2b7a3797e9e40114f092ddbfc 557 Gene3D G3DSA:3.10.20.310 70 149 1.8E-15 T 26-04-2016 RGE_RS03330 6f0778e2b7a3797e9e40114f092ddbfc 557 Pfam PF08479 POTRA domain, ShlB-type 76 149 2.6E-21 T 26-04-2016 IPR013686 Polypeptide-transport-associated, ShlB-type RGE_RS03330 6f0778e2b7a3797e9e40114f092ddbfc 557 PANTHER PTHR34597:SF1 64 557 2.2E-88 T 26-04-2016 RGE_RS06690 4bc29b239057a5022c71bacbebb905c5 242 PANTHER PTHR31881 8 229 1.1E-64 T 26-04-2016 RGE_RS06690 4bc29b239057a5022c71bacbebb905c5 242 PANTHER PTHR31881:SF3 8 229 1.1E-64 T 26-04-2016 RGE_RS06690 4bc29b239057a5022c71bacbebb905c5 242 Pfam PF04654 Protein of unknown function, DUF599 18 227 2.7E-62 T 26-04-2016 IPR006747 Protein of unknown function DUF599 RGE_RS15340 d79b0f5d9cf098db8195e204a1095eb8 620 Gene3D G3DSA:3.30.70.270 433 599 2.0E-19 T 26-04-2016 RGE_RS15340 d79b0f5d9cf098db8195e204a1095eb8 620 Gene3D G3DSA:3.20.20.450 29 264 1.1E-54 T 26-04-2016 IPR001633 EAL domain RGE_RS15340 d79b0f5d9cf098db8195e204a1095eb8 620 PANTHER PTHR33121 29 260 1.4E-38 T 26-04-2016 RGE_RS15340 d79b0f5d9cf098db8195e204a1095eb8 620 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 444 517 2.1E-11 T 26-04-2016 IPR000160 GGDEF domain RGE_RS15340 d79b0f5d9cf098db8195e204a1095eb8 620 SMART SM00052 21 265 3.5E-30 T 26-04-2016 IPR001633 EAL domain RGE_RS15340 d79b0f5d9cf098db8195e204a1095eb8 620 Pfam PF00563 EAL domain 33 260 6.9E-47 T 26-04-2016 IPR001633 EAL domain RGE_RS15340 d79b0f5d9cf098db8195e204a1095eb8 620 SUPERFAMILY SSF141868 28 262 3.92E-56 T 26-04-2016 IPR001633 EAL domain RGE_RS15340 d79b0f5d9cf098db8195e204a1095eb8 620 PANTHER PTHR33121:SF10 29 260 1.4E-38 T 26-04-2016 RGE_RS15340 d79b0f5d9cf098db8195e204a1095eb8 620 SMART SM00267 419 605 3.0E-6 T 26-04-2016 IPR000160 GGDEF domain RGE_RS15340 d79b0f5d9cf098db8195e204a1095eb8 620 Pfam PF00990 Diguanylate cyclase, GGDEF domain 444 522 8.9E-12 T 26-04-2016 IPR000160 GGDEF domain RGE_RS15340 d79b0f5d9cf098db8195e204a1095eb8 620 SUPERFAMILY SSF55073 435 599 4.55E-18 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS14985 b52410d286d26aff2127a507594b80e8 509 SUPERFAMILY SSF53383 81 496 3.06E-87 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS14985 b52410d286d26aff2127a507594b80e8 509 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 61 4.3E-7 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS14985 b52410d286d26aff2127a507594b80e8 509 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 61 77 4.3E-7 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS14985 b52410d286d26aff2127a507594b80e8 509 SMART SM00345 28 87 4.1E-14 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS14985 b52410d286d26aff2127a507594b80e8 509 Gene3D G3DSA:1.10.10.10 20 90 3.2E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14985 b52410d286d26aff2127a507594b80e8 509 PANTHER PTHR11751 110 495 2.2E-137 T 26-04-2016 RGE_RS14985 b52410d286d26aff2127a507594b80e8 509 PANTHER PTHR11751:SF407 110 495 2.2E-137 T 26-04-2016 RGE_RS14985 b52410d286d26aff2127a507594b80e8 509 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 87 8.0E-16 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS14985 b52410d286d26aff2127a507594b80e8 509 Gene3D G3DSA:3.40.640.10 158 386 1.1E-55 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS14985 b52410d286d26aff2127a507594b80e8 509 Pfam PF00155 Aminotransferase class I and II 165 442 5.7E-20 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS14985 b52410d286d26aff2127a507594b80e8 509 SUPERFAMILY SSF46785 19 91 5.84E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10340 6912fac4ab68fc628f56c778d84d58ef 200 Gene3D G3DSA:1.10.760.10 34 124 5.5E-24 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10340 6912fac4ab68fc628f56c778d84d58ef 200 PIRSF PIRSF000005 1 200 6.6E-59 T 26-04-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 RGE_RS10340 6912fac4ab68fc628f56c778d84d58ef 200 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 26 96 8.1E-5 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10340 6912fac4ab68fc628f56c778d84d58ef 200 PRINTS PR00605 Class IC cytochrome C signature 174 196 3.6E-5 T 26-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 RGE_RS10340 6912fac4ab68fc628f56c778d84d58ef 200 PRINTS PR00605 Class IC cytochrome C signature 33 44 3.6E-5 T 26-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 RGE_RS10340 6912fac4ab68fc628f56c778d84d58ef 200 PANTHER PTHR33751:SF3 35 200 1.0E-48 T 26-04-2016 RGE_RS10340 6912fac4ab68fc628f56c778d84d58ef 200 PANTHER PTHR33751 35 200 1.0E-48 T 26-04-2016 RGE_RS10340 6912fac4ab68fc628f56c778d84d58ef 200 SUPERFAMILY SSF46626 33 102 6.93E-19 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10340 6912fac4ab68fc628f56c778d84d58ef 200 Pfam PF00034 Cytochrome c 114 199 2.2E-10 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10340 6912fac4ab68fc628f56c778d84d58ef 200 Gene3D G3DSA:1.10.760.10 125 200 1.2E-26 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10340 6912fac4ab68fc628f56c778d84d58ef 200 SUPERFAMILY SSF46626 111 199 5.01E-22 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 Pfam PF00672 HAMP domain 280 346 5.0E-11 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 Gene3D G3DSA:1.10.287.950 367 571 1.8E-52 T 26-04-2016 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 Gene3D G3DSA:3.30.450.20 149 275 2.2E-18 T 26-04-2016 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 PANTHER PTHR32089 93 601 2.4E-145 T 26-04-2016 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 SMART SM00304 297 351 6.2E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 274 294 4.5E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 527 556 4.5E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 450 477 4.5E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 373 402 4.5E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 479 508 4.5E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 411 598 9.1E-53 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 PANTHER PTHR32089:SF63 93 601 2.4E-145 T 26-04-2016 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 SUPERFAMILY SSF58104 319 600 1.44E-64 T 26-04-2016 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 SUPERFAMILY SSF103190 116 181 3.37E-11 T 26-04-2016 IPR029151 Periplasmic sensor domain-like RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 Gene3D G3DSA:3.30.450.20 88 148 2.3E-8 T 26-04-2016 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 SMART SM00283 352 599 1.7E-79 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS15795 e0a63eea55d4f54e76e3b6603d19a3be 601 Pfam PF02743 Cache domain 42 258 3.0E-17 T 26-04-2016 IPR033479 Double Cache domain 1 RGE_RS19005 2d950349186f2d2421b55f09f2c682d0 517 SUPERFAMILY SSF143968 351 512 2.22E-62 T 26-04-2016 RGE_RS19005 2d950349186f2d2421b55f09f2c682d0 517 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 308 483 5.5E-74 T 26-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 RGE_RS19005 2d950349186f2d2421b55f09f2c682d0 517 SUPERFAMILY SSF50475 3 350 5.89E-109 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS19005 2d950349186f2d2421b55f09f2c682d0 517 PANTHER PTHR30108 308 513 2.1E-221 T 26-04-2016 RGE_RS19005 2d950349186f2d2421b55f09f2c682d0 517 PANTHER PTHR30108 1 284 2.1E-221 T 26-04-2016 RGE_RS19005 2d950349186f2d2421b55f09f2c682d0 517 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 459 1.8E-156 T 26-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 RGE_RS19005 2d950349186f2d2421b55f09f2c682d0 517 Gene3D G3DSA:3.40.1670.10 365 482 4.4E-50 T 26-04-2016 RGE_RS19005 2d950349186f2d2421b55f09f2c682d0 517 Gene3D G3DSA:1.20.5.570 483 513 5.9E-12 T 26-04-2016 RGE_RS19005 2d950349186f2d2421b55f09f2c682d0 517 PANTHER PTHR30108:SF1 308 513 2.1E-221 T 26-04-2016 RGE_RS19005 2d950349186f2d2421b55f09f2c682d0 517 PANTHER PTHR30108:SF1 1 284 2.1E-221 T 26-04-2016 RGE_RS12265 691d8a5c7abd3ce4b9b5d293e205a05e 329 PANTHER PTHR30349:SF16 1 326 2.8E-76 T 26-04-2016 RGE_RS12265 691d8a5c7abd3ce4b9b5d293e205a05e 329 PANTHER PTHR30349 1 326 2.8E-76 T 26-04-2016 RGE_RS12265 691d8a5c7abd3ce4b9b5d293e205a05e 329 PIRSF PIRSF017082 2 327 1.2E-73 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS12265 691d8a5c7abd3ce4b9b5d293e205a05e 329 SUPERFAMILY SSF53850 119 289 1.41E-13 T 26-04-2016 RGE_RS12265 691d8a5c7abd3ce4b9b5d293e205a05e 329 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 54 325 4.0E-73 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS11450 f8e7d329a21a612d0e366bf4cb155c74 139 SUPERFAMILY SSF54534 54 127 3.53E-14 T 26-04-2016 RGE_RS11450 f8e7d329a21a612d0e366bf4cb155c74 139 PANTHER PTHR30437 41 137 3.1E-35 T 26-04-2016 RGE_RS11450 f8e7d329a21a612d0e366bf4cb155c74 139 PANTHER PTHR30437:SF5 41 137 3.1E-35 T 26-04-2016 RGE_RS11450 f8e7d329a21a612d0e366bf4cb155c74 139 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 55 126 2.6E-15 T 26-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RGE_RS11450 f8e7d329a21a612d0e366bf4cb155c74 139 Gene3D G3DSA:3.10.50.30 50 139 2.5E-23 T 26-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RGE_RS11450 f8e7d329a21a612d0e366bf4cb155c74 139 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 92 108 - T 26-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RGE_RS15280 cd27333eca385106da341e501e362242 447 SUPERFAMILY SSF52540 18 252 1.03E-58 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15280 cd27333eca385106da341e501e362242 447 SMART SM00382 42 226 2.9E-16 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS15280 cd27333eca385106da341e501e362242 447 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS15280 cd27333eca385106da341e501e362242 447 PANTHER PTHR24220 274 303 5.5E-97 T 26-04-2016 RGE_RS15280 cd27333eca385106da341e501e362242 447 PANTHER PTHR24220 322 431 5.5E-97 T 26-04-2016 RGE_RS15280 cd27333eca385106da341e501e362242 447 PANTHER PTHR24220 14 254 5.5E-97 T 26-04-2016 RGE_RS15280 cd27333eca385106da341e501e362242 447 Pfam PF00005 ABC transporter 33 172 1.6E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS15280 cd27333eca385106da341e501e362242 447 PANTHER PTHR24220:SF589 274 303 5.5E-97 T 26-04-2016 RGE_RS15280 cd27333eca385106da341e501e362242 447 PANTHER PTHR24220:SF589 322 431 5.5E-97 T 26-04-2016 RGE_RS15280 cd27333eca385106da341e501e362242 447 PANTHER PTHR24220:SF589 14 254 5.5E-97 T 26-04-2016 RGE_RS15280 cd27333eca385106da341e501e362242 447 Pfam PF09821 C-terminal AAA-associated domain 312 426 6.2E-26 T 26-04-2016 IPR018632 C-terminal AAA-associated domain RGE_RS15280 cd27333eca385106da341e501e362242 447 Gene3D G3DSA:3.40.50.300 8 221 3.5E-58 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08215 db62a2c4e525bb063f7a83ff1b389668 89 PANTHER PTHR34040 1 89 1.1E-31 T 26-04-2016 RGE_RS08215 db62a2c4e525bb063f7a83ff1b389668 89 PANTHER PTHR34040:SF2 1 89 1.1E-31 T 26-04-2016 RGE_RS08215 db62a2c4e525bb063f7a83ff1b389668 89 Pfam PF01313 Bacterial export proteins, family 3 5 77 8.1E-29 T 26-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RGE_RS08215 db62a2c4e525bb063f7a83ff1b389668 89 PIRSF PIRSF004669 1 89 5.2E-30 T 26-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RGE_RS08215 db62a2c4e525bb063f7a83ff1b389668 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.1E-20 T 26-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RGE_RS08215 db62a2c4e525bb063f7a83ff1b389668 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.1E-20 T 26-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RGE_RS08215 db62a2c4e525bb063f7a83ff1b389668 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.1E-20 T 26-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RGE_RS08215 db62a2c4e525bb063f7a83ff1b389668 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 1.5E-29 T 26-04-2016 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 RGE_RS10610 11945a797902c06655fac50fc9695532 303 PANTHER PTHR12715:SF5 17 301 6.5E-65 T 26-04-2016 RGE_RS10610 11945a797902c06655fac50fc9695532 303 SUPERFAMILY SSF103481 207 302 6.28E-10 T 26-04-2016 RGE_RS10610 11945a797902c06655fac50fc9695532 303 SUPERFAMILY SSF103481 52 154 4.97E-15 T 26-04-2016 RGE_RS10610 11945a797902c06655fac50fc9695532 303 PANTHER PTHR12715 17 301 6.5E-65 T 26-04-2016 RGE_RS10610 11945a797902c06655fac50fc9695532 303 Pfam PF00892 EamA-like transporter family 18 152 1.6E-20 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS10610 11945a797902c06655fac50fc9695532 303 Pfam PF00892 EamA-like transporter family 165 300 9.4E-10 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 SUPERFAMILY SSF53850 89 305 7.78E-38 T 26-04-2016 RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 SUPERFAMILY SSF46785 1 84 1.04E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 Pfam PF03466 LysR substrate binding domain 95 306 5.7E-28 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 PANTHER PTHR30118 1 311 6.3E-75 T 26-04-2016 RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.0E-7 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.0E-7 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.0E-7 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 PANTHER PTHR30118:SF8 1 311 6.3E-75 T 26-04-2016 RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 5.8E-19 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 Gene3D G3DSA:3.40.190.10 187 275 5.6E-28 T 26-04-2016 RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 Gene3D G3DSA:1.10.10.10 1 86 2.3E-29 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 Gene3D G3DSA:3.40.190.10 89 186 1.5E-23 T 26-04-2016 RGE_RS00855 d5ce1bd0451759e2514eb668818ecac3 314 Gene3D G3DSA:3.40.190.10 294 309 1.5E-23 T 26-04-2016 RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 5 279 2.6E-140 T 26-04-2016 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 Gene3D G3DSA:3.40.50.300 6 273 9.5E-78 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 PIRSF PIRSF000363 3 279 1.7E-121 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 SUPERFAMILY SSF52540 5 280 1.02E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 PRINTS PR00091 Nitrogenase component II signature 87 101 9.2E-38 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 PRINTS PR00091 Nitrogenase component II signature 32 47 9.2E-38 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 PRINTS PR00091 Nitrogenase component II signature 125 140 9.2E-38 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 PRINTS PR00091 Nitrogenase component II signature 10 23 9.2E-38 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 ProSitePatterns PS00746 NifH/frxC family signature 1. 89 101 - T 26-04-2016 IPR030655 NifH/chlL conserved site RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 PANTHER PTHR13696:SF5 4 261 3.4E-149 T 26-04-2016 RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 Hamap MF_00533 Nitrogenase iron protein [nifH]. 4 277 52.959 T 26-04-2016 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 5 276 2.3E-136 T 26-04-2016 RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 PANTHER PTHR13696 4 261 3.4E-149 T 26-04-2016 RGE_RS20900 4da021868dd76234668350c8bcc56dcf 293 ProSitePatterns PS00692 NifH/frxC family signature 2. 126 139 - T 26-04-2016 IPR030655 NifH/chlL conserved site RGE_RS13805 ff8f96b72bd116a2637fb23fcb501371 234 Pfam PF02195 ParB-like nuclease domain 6 90 3.0E-5 T 26-04-2016 IPR003115 ParB/Sulfiredoxin RGE_RS13805 ff8f96b72bd116a2637fb23fcb501371 234 SUPERFAMILY SSF110849 2 92 1.7E-7 T 26-04-2016 IPR003115 ParB/Sulfiredoxin RGE_RS08505 52f005a8f7d4d74fc53c241e7240149e 231 SMART SM00862 149 222 3.6E-16 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS08505 52f005a8f7d4d74fc53c241e7240149e 231 Gene3D G3DSA:3.40.50.2300 1 126 2.5E-32 T 26-04-2016 RGE_RS08505 52f005a8f7d4d74fc53c241e7240149e 231 SMART SM00448 1 116 2.2E-30 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08505 52f005a8f7d4d74fc53c241e7240149e 231 SUPERFAMILY SSF52172 1 133 5.41E-32 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS08505 52f005a8f7d4d74fc53c241e7240149e 231 PANTHER PTHR26402 1 225 3.1E-59 T 26-04-2016 RGE_RS08505 52f005a8f7d4d74fc53c241e7240149e 231 Pfam PF00072 Response regulator receiver domain 4 116 1.0E-19 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08505 52f005a8f7d4d74fc53c241e7240149e 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 222 2.8E-16 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS08505 52f005a8f7d4d74fc53c241e7240149e 231 Gene3D G3DSA:1.10.10.10 127 224 4.6E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS08505 52f005a8f7d4d74fc53c241e7240149e 231 SUPERFAMILY SSF46894 122 224 1.07E-19 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS08505 52f005a8f7d4d74fc53c241e7240149e 231 PANTHER PTHR26402:SF578 1 225 3.1E-59 T 26-04-2016 RGE_RS18580 4ba48bf8dc7f1bf1e1360f5943961eb8 210 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 57 203 2.2E-20 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS18580 4ba48bf8dc7f1bf1e1360f5943961eb8 210 Pfam PF04542 Sigma-70 region 2 63 124 1.5E-11 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS18580 4ba48bf8dc7f1bf1e1360f5943961eb8 210 SUPERFAMILY SSF88659 151 205 3.74E-12 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS18580 4ba48bf8dc7f1bf1e1360f5943961eb8 210 SUPERFAMILY SSF88946 41 140 1.63E-20 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS18580 4ba48bf8dc7f1bf1e1360f5943961eb8 210 Gene3D G3DSA:1.10.1740.10 43 143 1.1E-20 T 26-04-2016 RGE_RS18580 4ba48bf8dc7f1bf1e1360f5943961eb8 210 PANTHER PTHR30173 27 208 1.2E-35 T 26-04-2016 RGE_RS18580 4ba48bf8dc7f1bf1e1360f5943961eb8 210 Gene3D G3DSA:1.10.10.10 150 206 1.2E-15 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18580 4ba48bf8dc7f1bf1e1360f5943961eb8 210 Pfam PF08281 Sigma-70, region 4 151 202 3.7E-14 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS18580 4ba48bf8dc7f1bf1e1360f5943961eb8 210 PANTHER PTHR30173:SF3 27 208 1.2E-35 T 26-04-2016 RGE_RS09975 01313a4c7d3e8e02615ec15bb18b3d65 451 SUPERFAMILY SSF161070 6 448 5.23E-126 T 26-04-2016 RGE_RS09975 01313a4c7d3e8e02615ec15bb18b3d65 451 Pfam PF00209 Sodium:neurotransmitter symporter family 6 124 9.6E-25 T 26-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RGE_RS09975 01313a4c7d3e8e02615ec15bb18b3d65 451 Pfam PF00209 Sodium:neurotransmitter symporter family 153 447 5.7E-29 T 26-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RGE_RS09975 01313a4c7d3e8e02615ec15bb18b3d65 451 PANTHER PTHR11616:SF167 6 448 1.1E-133 T 26-04-2016 RGE_RS09975 01313a4c7d3e8e02615ec15bb18b3d65 451 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 43 62 2.0E-13 T 26-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RGE_RS09975 01313a4c7d3e8e02615ec15bb18b3d65 451 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 300 319 2.0E-13 T 26-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RGE_RS09975 01313a4c7d3e8e02615ec15bb18b3d65 451 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 386 406 2.0E-13 T 26-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RGE_RS09975 01313a4c7d3e8e02615ec15bb18b3d65 451 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 14 35 2.0E-13 T 26-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RGE_RS09975 01313a4c7d3e8e02615ec15bb18b3d65 451 PANTHER PTHR11616 6 448 1.1E-133 T 26-04-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RGE_RS04040 e9a147e85d682dd0a18e00cd93dac46f 363 Pfam PF01761 3-dehydroquinate synthase 70 327 1.8E-106 T 26-04-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RGE_RS04040 e9a147e85d682dd0a18e00cd93dac46f 363 PANTHER PTHR21090 1 362 4.7E-187 T 26-04-2016 RGE_RS04040 e9a147e85d682dd0a18e00cd93dac46f 363 PIRSF PIRSF001455 12 360 3.0E-106 T 26-04-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RGE_RS04040 e9a147e85d682dd0a18e00cd93dac46f 363 Gene3D G3DSA:3.40.50.1970 7 175 6.3E-66 T 26-04-2016 RGE_RS04040 e9a147e85d682dd0a18e00cd93dac46f 363 Gene3D G3DSA:1.20.1090.10 176 357 3.2E-66 T 26-04-2016 RGE_RS04040 e9a147e85d682dd0a18e00cd93dac46f 363 SUPERFAMILY SSF56796 7 358 7.72E-115 T 26-04-2016 RGE_RS04040 e9a147e85d682dd0a18e00cd93dac46f 363 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 5 359 41.695 T 26-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RGE_RS04040 e9a147e85d682dd0a18e00cd93dac46f 363 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 17 346 1.2E-115 T 26-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RGE_RS01045 32f4b751badbefa39ed1c8737bbd69a1 365 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 355 5.7E-123 T 26-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS01045 32f4b751badbefa39ed1c8737bbd69a1 365 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 7 357 48.19 T 26-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS01045 32f4b751badbefa39ed1c8737bbd69a1 365 Gene3D G3DSA:3.20.20.210 2 359 1.4E-145 T 26-04-2016 RGE_RS01045 32f4b751badbefa39ed1c8737bbd69a1 365 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 23 32 - T 26-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS01045 32f4b751badbefa39ed1c8737bbd69a1 365 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 143 159 - T 26-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS01045 32f4b751badbefa39ed1c8737bbd69a1 365 PANTHER PTHR21091 6 361 7.8E-139 T 26-04-2016 RGE_RS01045 32f4b751badbefa39ed1c8737bbd69a1 365 SUPERFAMILY SSF51726 4 359 3.31E-113 T 26-04-2016 RGE_RS01045 32f4b751badbefa39ed1c8737bbd69a1 365 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 6 356 3.0E-132 T 26-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS01045 32f4b751badbefa39ed1c8737bbd69a1 365 PANTHER PTHR21091:SF2 6 361 7.8E-139 T 26-04-2016 RGE_RS04215 7cb541906849ea3735895ad9dbd9e9c2 362 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 12 362 52.853 T 26-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 RGE_RS04215 7cb541906849ea3735895ad9dbd9e9c2 362 PANTHER PTHR11751 8 359 1.3E-65 T 26-04-2016 RGE_RS04215 7cb541906849ea3735895ad9dbd9e9c2 362 SUPERFAMILY SSF53383 13 360 1.32E-71 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS04215 7cb541906849ea3735895ad9dbd9e9c2 362 Gene3D G3DSA:3.90.1150.10 264 360 9.1E-20 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS04215 7cb541906849ea3735895ad9dbd9e9c2 362 PANTHER PTHR11751:SF398 8 359 1.3E-65 T 26-04-2016 RGE_RS04215 7cb541906849ea3735895ad9dbd9e9c2 362 Pfam PF00155 Aminotransferase class I and II 39 358 8.3E-45 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS04215 7cb541906849ea3735895ad9dbd9e9c2 362 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 14 359 1.3E-91 T 26-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 RGE_RS04215 7cb541906849ea3735895ad9dbd9e9c2 362 Gene3D G3DSA:3.40.640.10 44 263 1.3E-57 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS09085 f7d419eb450d6cd0508b483dd808a6a8 236 SMART SM01207 11 192 2.0E-81 T 26-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RGE_RS09085 f7d419eb450d6cd0508b483dd808a6a8 236 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 7 202 2.7E-56 T 26-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RGE_RS09085 f7d419eb450d6cd0508b483dd808a6a8 236 PANTHER PTHR30309 1 202 8.5E-67 T 26-04-2016 RGE_RS09085 f7d419eb450d6cd0508b483dd808a6a8 236 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 8 200 20.225 T 26-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RGE_RS09085 f7d419eb450d6cd0508b483dd808a6a8 236 PANTHER PTHR30309:SF0 1 202 8.5E-67 T 26-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RGE_RS09085 f7d419eb450d6cd0508b483dd808a6a8 236 Pfam PF02660 Glycerol-3-phosphate acyltransferase 13 191 9.7E-52 T 26-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RGE_RS07635 cf11931255ed29bbdc267482dab15320 328 SUPERFAMILY SSF51735 114 290 3.35E-49 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS07635 cf11931255ed29bbdc267482dab15320 328 Pfam PF00107 Zinc-binding dehydrogenase 154 271 3.6E-30 T 26-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RGE_RS07635 cf11931255ed29bbdc267482dab15320 328 SUPERFAMILY SSF50129 1 141 7.7E-36 T 26-04-2016 IPR011032 GroES-like RGE_RS07635 cf11931255ed29bbdc267482dab15320 328 SMART SM00829 10 326 1.5E-45 T 26-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RGE_RS07635 cf11931255ed29bbdc267482dab15320 328 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 1 328 2.2E-140 T 26-04-2016 IPR014189 Quinone oxidoreductase PIG3 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- RGE_RS07635 cf11931255ed29bbdc267482dab15320 328 Gene3D G3DSA:3.40.50.720 150 265 2.1E-30 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS07635 cf11931255ed29bbdc267482dab15320 328 PANTHER PTHR11695 15 327 3.2E-127 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS07635 cf11931255ed29bbdc267482dab15320 328 PANTHER PTHR11695:SF610 15 327 3.2E-127 T 26-04-2016 RGE_RS07635 cf11931255ed29bbdc267482dab15320 328 Gene3D G3DSA:3.90.180.10 1 149 1.0E-39 T 26-04-2016 IPR011032 GroES-like RGE_RS10980 8773dcb6bd8145c8070fcb5b7ff527ac 290 Pfam PF13145 PPIC-type PPIASE domain 138 252 9.1E-9 T 26-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 RGE_RS17510 a276c1bf2794428b7646c9cb0fa784e7 74 SUPERFAMILY SSF159127 1 72 9.81E-23 T 26-04-2016 RGE_RS17510 a276c1bf2794428b7646c9cb0fa784e7 74 PANTHER PTHR35177 1 68 8.2E-20 T 26-04-2016 RGE_RS17510 a276c1bf2794428b7646c9cb0fa784e7 74 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 39 55 2.4E-20 T 26-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RGE_RS17510 a276c1bf2794428b7646c9cb0fa784e7 74 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 18 34 2.4E-20 T 26-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RGE_RS17510 a276c1bf2794428b7646c9cb0fa784e7 74 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 2.4E-20 T 26-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RGE_RS17510 a276c1bf2794428b7646c9cb0fa784e7 74 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 57 69 2.4E-20 T 26-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RGE_RS17510 a276c1bf2794428b7646c9cb0fa784e7 74 PANTHER PTHR35177:SF2 1 68 8.2E-20 T 26-04-2016 RGE_RS17510 a276c1bf2794428b7646c9cb0fa784e7 74 Pfam PF01455 HupF/HypC family 1 66 8.7E-25 T 26-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RGE_RS17510 a276c1bf2794428b7646c9cb0fa784e7 74 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 72 2.4E-21 T 26-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RGE_RS09745 fcb5674306c9b4ce7df58e227b842c4b 196 SUPERFAMILY SSF54980 131 194 4.68E-10 T 26-04-2016 IPR009022 Elongation factor G, III-V domain RGE_RS09745 fcb5674306c9b4ce7df58e227b842c4b 196 PANTHER PTHR16301 12 192 4.8E-41 T 26-04-2016 IPR023582 Impact family RGE_RS09745 fcb5674306c9b4ce7df58e227b842c4b 196 Gene3D G3DSA:3.30.70.240 130 196 5.2E-9 T 26-04-2016 IPR000640 Translation elongation factor EFG, V domain RGE_RS09745 fcb5674306c9b4ce7df58e227b842c4b 196 Pfam PF09186 Domain of unknown function (DUF1949) 134 189 9.4E-12 T 26-04-2016 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal RGE_RS09745 fcb5674306c9b4ce7df58e227b842c4b 196 Pfam PF01205 Uncharacterized protein family UPF0029 16 118 2.2E-25 T 26-04-2016 IPR001498 Impact, N-terminal RGE_RS09745 fcb5674306c9b4ce7df58e227b842c4b 196 Gene3D G3DSA:3.30.230.30 4 121 1.7E-40 T 26-04-2016 IPR001498 Impact, N-terminal RGE_RS09745 fcb5674306c9b4ce7df58e227b842c4b 196 SUPERFAMILY SSF54211 4 121 1.52E-36 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS18655 f64572b494b1dbdb5bdf931cb6d934b6 255 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 251 9.0E-31 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS18655 f64572b494b1dbdb5bdf931cb6d934b6 255 SUPERFAMILY SSF111369 43 245 4.71E-20 T 26-04-2016 RGE_RS18655 f64572b494b1dbdb5bdf931cb6d934b6 255 PANTHER PTHR30469 43 249 9.5E-27 T 26-04-2016 RGE_RS18655 f64572b494b1dbdb5bdf931cb6d934b6 255 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 245 3.0E-11 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS18655 f64572b494b1dbdb5bdf931cb6d934b6 255 Gene3D G3DSA:2.40.50.100 142 175 1.2E-8 T 26-04-2016 RGE_RS18655 f64572b494b1dbdb5bdf931cb6d934b6 255 Gene3D G3DSA:2.40.50.100 48 81 1.2E-8 T 26-04-2016 RGE_RS13080 51549a810e16da18bb6948c49cdef11c 159 Gene3D G3DSA:3.30.1330.50 1 158 1.8E-66 T 26-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13080 51549a810e16da18bb6948c49cdef11c 159 PANTHER PTHR32125 1 159 4.3E-50 T 26-04-2016 RGE_RS13080 51549a810e16da18bb6948c49cdef11c 159 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 37 52 - T 26-04-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13080 51549a810e16da18bb6948c49cdef11c 159 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4 157 7.1E-64 T 26-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13080 51549a810e16da18bb6948c49cdef11c 159 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 3 158 34.485 T 26-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13080 51549a810e16da18bb6948c49cdef11c 159 Pfam PF02542 YgbB family 3 156 4.6E-61 T 26-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS13080 51549a810e16da18bb6948c49cdef11c 159 SUPERFAMILY SSF69765 1 158 1.57E-61 T 26-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RGE_RS22460 2db993dce135c1b5de18335057e3ee2c 252 Pfam PF00005 ABC transporter 26 177 1.3E-33 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS22460 2db993dce135c1b5de18335057e3ee2c 252 PANTHER PTHR24220:SF497 11 248 1.8E-134 T 26-04-2016 RGE_RS22460 2db993dce135c1b5de18335057e3ee2c 252 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 10 252 3.6E-115 T 26-04-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 RGE_RS22460 2db993dce135c1b5de18335057e3ee2c 252 Gene3D G3DSA:3.40.50.300 9 245 3.5E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22460 2db993dce135c1b5de18335057e3ee2c 252 PANTHER PTHR24220 11 248 1.8E-134 T 26-04-2016 RGE_RS22460 2db993dce135c1b5de18335057e3ee2c 252 SUPERFAMILY SSF52540 10 248 4.76E-63 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22460 2db993dce135c1b5de18335057e3ee2c 252 SMART SM00382 34 240 6.4E-9 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS22460 2db993dce135c1b5de18335057e3ee2c 252 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 247 9.0E-8 T 26-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RGE_RS22460 2db993dce135c1b5de18335057e3ee2c 252 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS11035 608005427bb822436d9d57e6a4078a32 283 PANTHER PTHR34990 10 259 3.5E-125 T 26-04-2016 RGE_RS11035 608005427bb822436d9d57e6a4078a32 283 SUPERFAMILY SSF56300 23 141 4.27E-32 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS11035 608005427bb822436d9d57e6a4078a32 283 SUPERFAMILY SSF56300 197 256 4.27E-32 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS11035 608005427bb822436d9d57e6a4078a32 283 Pfam PF00149 Calcineurin-like phosphoesterase 24 223 4.0E-10 T 26-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RGE_RS11035 608005427bb822436d9d57e6a4078a32 283 PANTHER PTHR34990:SF2 10 259 3.5E-125 T 26-04-2016 RGE_RS11035 608005427bb822436d9d57e6a4078a32 283 Gene3D G3DSA:3.60.21.10 204 258 8.5E-31 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS11035 608005427bb822436d9d57e6a4078a32 283 Gene3D G3DSA:3.60.21.10 24 142 8.5E-31 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS00140 791fc51d8f0769007bd58c92913cbc4a 210 PANTHER PTHR38588:SF1 4 203 2.2E-18 T 26-04-2016 RGE_RS00140 791fc51d8f0769007bd58c92913cbc4a 210 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 14 148 4.6E-16 T 26-04-2016 IPR010419 Carbon monoxide dehydrogenase subunit G RGE_RS00140 791fc51d8f0769007bd58c92913cbc4a 210 SUPERFAMILY SSF55961 4 148 7.14E-27 T 26-04-2016 RGE_RS00140 791fc51d8f0769007bd58c92913cbc4a 210 Gene3D G3DSA:3.30.530.20 5 162 1.2E-34 T 26-04-2016 IPR023393 START-like domain RGE_RS00140 791fc51d8f0769007bd58c92913cbc4a 210 PANTHER PTHR38588 4 203 2.2E-18 T 26-04-2016 RGE_RS14370 2322109a75ad78cb39c0842737996f42 194 Pfam PF02417 Chromate transporter 9 189 1.8E-28 T 26-04-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 RGE_RS14370 2322109a75ad78cb39c0842737996f42 194 PANTHER PTHR33567 17 194 2.0E-17 T 26-04-2016 RGE_RS09405 8a84883dc3db0676f31e91d4afa070b2 474 Pfam PF06114 Domain of unknown function (DUF955) 192 314 9.3E-18 T 26-04-2016 IPR010359 HTH domain, IrrE-type RGE_RS09405 8a84883dc3db0676f31e91d4afa070b2 474 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 315 471 5.8E-70 T 26-04-2016 IPR018653 Domain of unknown function DUF2083,transcriptional regulator RGE_RS09405 8a84883dc3db0676f31e91d4afa070b2 474 SUPERFAMILY SSF47413 3 69 8.85E-16 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS09405 8a84883dc3db0676f31e91d4afa070b2 474 Pfam PF01381 Helix-turn-helix 10 64 7.0E-14 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS09405 8a84883dc3db0676f31e91d4afa070b2 474 PANTHER PTHR10245:SF49 6 101 3.8E-14 T 26-04-2016 RGE_RS09405 8a84883dc3db0676f31e91d4afa070b2 474 PANTHER PTHR10245 6 101 3.8E-14 T 26-04-2016 RGE_RS09405 8a84883dc3db0676f31e91d4afa070b2 474 PIRSF PIRSF019251 1 474 8.4E-188 T 26-04-2016 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 RGE_RS09405 8a84883dc3db0676f31e91d4afa070b2 474 Gene3D G3DSA:1.10.260.40 3 73 1.5E-20 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS09405 8a84883dc3db0676f31e91d4afa070b2 474 SMART SM00530 9 64 2.3E-16 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS12060 49eba6dfb4fe1ae9a4bed357190b65c2 343 PANTHER PTHR10366 11 337 1.6E-130 T 26-04-2016 RGE_RS12060 49eba6dfb4fe1ae9a4bed357190b65c2 343 SUPERFAMILY SSF51735 11 317 1.5E-86 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS12060 49eba6dfb4fe1ae9a4bed357190b65c2 343 Pfam PF16363 GDP-mannose 4,6 dehydratase 13 310 2.2E-50 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS12060 49eba6dfb4fe1ae9a4bed357190b65c2 343 Gene3D G3DSA:3.40.50.720 9 181 1.9E-49 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS12060 49eba6dfb4fe1ae9a4bed357190b65c2 343 PANTHER PTHR10366:SF399 11 337 1.6E-130 T 26-04-2016 RGE_RS12060 49eba6dfb4fe1ae9a4bed357190b65c2 343 Gene3D G3DSA:3.90.25.10 182 319 4.9E-52 T 26-04-2016 RGE_RS19150 0edeb8911826dab52c5107c4167e4f9d 718 PANTHER PTHR32552:SF13 42 714 1.9E-154 T 26-04-2016 RGE_RS19150 0edeb8911826dab52c5107c4167e4f9d 718 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 49 - T 26-04-2016 IPR010916 TonB box, conserved site RGE_RS19150 0edeb8911826dab52c5107c4167e4f9d 718 Gene3D G3DSA:2.170.130.10 34 166 2.2E-28 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS19150 0edeb8911826dab52c5107c4167e4f9d 718 Gene3D G3DSA:2.40.170.20 167 714 1.3E-91 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS19150 0edeb8911826dab52c5107c4167e4f9d 718 PANTHER PTHR32552 42 714 1.9E-154 T 26-04-2016 RGE_RS19150 0edeb8911826dab52c5107c4167e4f9d 718 Pfam PF07715 TonB-dependent Receptor Plug Domain 56 166 5.7E-20 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS19150 0edeb8911826dab52c5107c4167e4f9d 718 Pfam PF00593 TonB dependent receptor 456 712 1.0E-28 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS19150 0edeb8911826dab52c5107c4167e4f9d 718 SUPERFAMILY SSF56935 34 714 9.3E-116 T 26-04-2016 RGE_RS21235 1aebb163e119e402db94043245f55aa5 392 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 387 2.6E-39 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS21235 1aebb163e119e402db94043245f55aa5 392 Gene3D G3DSA:1.10.540.10 4 124 6.2E-46 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS21235 1aebb163e119e402db94043245f55aa5 392 Gene3D G3DSA:1.20.140.10 223 389 4.1E-61 T 26-04-2016 RGE_RS21235 1aebb163e119e402db94043245f55aa5 392 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 26-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RGE_RS21235 1aebb163e119e402db94043245f55aa5 392 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 5.5E-27 T 26-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RGE_RS21235 1aebb163e119e402db94043245f55aa5 392 PANTHER PTHR10909:SF332 7 390 2.8E-252 T 26-04-2016 RGE_RS21235 1aebb163e119e402db94043245f55aa5 392 SUPERFAMILY SSF56645 6 247 3.01E-87 T 26-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RGE_RS21235 1aebb163e119e402db94043245f55aa5 392 SUPERFAMILY SSF47203 232 389 3.22E-46 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS21235 1aebb163e119e402db94043245f55aa5 392 Gene3D G3DSA:2.40.110.10 126 222 1.6E-40 T 26-04-2016 RGE_RS21235 1aebb163e119e402db94043245f55aa5 392 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 346 365 - T 26-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RGE_RS21235 1aebb163e119e402db94043245f55aa5 392 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 123 4.2E-40 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS21235 1aebb163e119e402db94043245f55aa5 392 PANTHER PTHR10909 7 390 2.8E-252 T 26-04-2016 RGE_RS04195 081cc6268e40613b073405493783d411 86 PIRSF PIRSF003113 1 86 2.1E-21 T 26-04-2016 IPR002634 BolA protein RGE_RS04195 081cc6268e40613b073405493783d411 86 PANTHER PTHR12735 21 80 2.6E-16 T 26-04-2016 RGE_RS04195 081cc6268e40613b073405493783d411 86 SUPERFAMILY SSF82657 5 81 7.98E-27 T 26-04-2016 IPR002634 BolA protein RGE_RS04195 081cc6268e40613b073405493783d411 86 PANTHER PTHR12735:SF3 21 80 2.6E-16 T 26-04-2016 RGE_RS04195 081cc6268e40613b073405493783d411 86 Gene3D G3DSA:3.30.300.90 4 81 2.9E-27 T 26-04-2016 IPR002634 BolA protein RGE_RS04195 081cc6268e40613b073405493783d411 86 Pfam PF01722 BolA-like protein 21 76 1.1E-18 T 26-04-2016 IPR002634 BolA protein RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 Pfam PF00512 His Kinase A (phospho-acceptor) domain 205 264 1.3E-8 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 Gene3D G3DSA:1.10.287.130 193 263 2.4E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 Gene3D G3DSA:3.30.565.10 267 406 3.0E-27 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 Pfam PF00672 HAMP domain 134 196 8.2E-7 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 SMART SM00387 309 410 4.6E-23 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 SUPERFAMILY SSF47384 184 263 1.8E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 SUPERFAMILY SSF55874 273 405 2.49E-26 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 314 405 3.6E-17 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 PANTHER PTHR24423 8 16 3.6E-46 T 26-04-2016 RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 PANTHER PTHR24423 143 404 3.6E-46 T 26-04-2016 RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 SMART SM00388 201 267 2.0E-6 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 PRINTS PR00344 Bacterial sensor protein C-terminal signature 394 407 8.6E-8 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 355 8.6E-8 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11245 5a05ec88de1850a8acb806bb9c2d23e0 410 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 389 8.6E-8 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS07205 3117be072b496186bccd2cad343dcee2 257 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 77 6.9E-23 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS07205 3117be072b496186bccd2cad343dcee2 257 PANTHER PTHR11751 16 116 3.0E-26 T 26-04-2016 RGE_RS07205 3117be072b496186bccd2cad343dcee2 257 SUPERFAMILY SSF46785 9 81 3.64E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07205 3117be072b496186bccd2cad343dcee2 257 SMART SM00895 100 226 3.4E-22 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS07205 3117be072b496186bccd2cad343dcee2 257 SMART SM00345 18 77 5.4E-22 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS07205 3117be072b496186bccd2cad343dcee2 257 Gene3D G3DSA:1.20.120.530 94 234 3.8E-28 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS07205 3117be072b496186bccd2cad343dcee2 257 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 5.9E-10 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS07205 3117be072b496186bccd2cad343dcee2 257 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 5.9E-10 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS07205 3117be072b496186bccd2cad343dcee2 257 SUPERFAMILY SSF48008 97 231 9.42E-26 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS07205 3117be072b496186bccd2cad343dcee2 257 Pfam PF07729 FCD domain 100 225 8.6E-24 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS07205 3117be072b496186bccd2cad343dcee2 257 Gene3D G3DSA:1.10.10.10 13 78 1.4E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13115 14df32306930531ce6e348eb2344dc8c 130 SUPERFAMILY SSF54593 10 125 1.09E-21 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS13115 14df32306930531ce6e348eb2344dc8c 130 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 15 122 4.0E-7 T 26-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RGE_RS13115 14df32306930531ce6e348eb2344dc8c 130 PANTHER PTHR33993 1 130 3.4E-33 T 26-04-2016 RGE_RS13115 14df32306930531ce6e348eb2344dc8c 130 PANTHER PTHR33993:SF3 1 130 3.4E-33 T 26-04-2016 RGE_RS13115 14df32306930531ce6e348eb2344dc8c 130 Gene3D G3DSA:3.10.180.10 10 125 8.6E-35 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS21255 7e831cf3683faaa448883d1c9cd617d0 293 SUPERFAMILY SSF161098 6 290 4.02E-38 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS21255 7e831cf3683faaa448883d1c9cd617d0 293 Gene3D G3DSA:1.10.3720.10 13 284 4.6E-35 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS21255 7e831cf3683faaa448883d1c9cd617d0 293 PANTHER PTHR32243:SF18 2 261 7.9E-43 T 26-04-2016 RGE_RS21255 7e831cf3683faaa448883d1c9cd617d0 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 275 1.0E-8 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS21255 7e831cf3683faaa448883d1c9cd617d0 293 PANTHER PTHR32243 2 261 7.9E-43 T 26-04-2016 RGE_RS13445 c78059252dadf862b1f6f360103dde78 272 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 10 251 42.483 T 26-04-2016 IPR017689 Outer membrane protein assembly factor BamD RGE_RS13445 c78059252dadf862b1f6f360103dde78 272 PANTHER PTHR37423 1 259 2.1E-68 T 26-04-2016 RGE_RS13445 c78059252dadf862b1f6f360103dde78 272 SUPERFAMILY SSF48452 40 108 1.54E-6 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS13445 c78059252dadf862b1f6f360103dde78 272 SUPERFAMILY SSF48452 188 231 1.54E-6 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS13445 c78059252dadf862b1f6f360103dde78 272 Gene3D G3DSA:1.25.40.10 40 215 1.8E-4 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS13445 c78059252dadf862b1f6f360103dde78 272 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 14 255 1.3E-80 T 26-04-2016 IPR017689 Outer membrane protein assembly factor BamD RGE_RS13445 c78059252dadf862b1f6f360103dde78 272 Pfam PF13525 Outer membrane lipoprotein 38 242 9.9E-55 T 26-04-2016 RGE_RS14835 e16f2362267bc5e7cfe36c83e8859492 327 Pfam PF16220 Domain of unknown function (DUF4880) 15 56 2.1E-10 T 26-04-2016 IPR032623 FecR, N-terminal RGE_RS14835 e16f2362267bc5e7cfe36c83e8859492 327 PANTHER PTHR30273 6 327 3.9E-96 T 26-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RGE_RS14835 e16f2362267bc5e7cfe36c83e8859492 327 PIRSF PIRSF018266 3 326 1.5E-91 T 26-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RGE_RS14835 e16f2362267bc5e7cfe36c83e8859492 327 Pfam PF04773 FecR protein 121 214 1.1E-20 T 26-04-2016 IPR006860 FecR protein RGE_RS14835 e16f2362267bc5e7cfe36c83e8859492 327 PANTHER PTHR30273:SF3 6 327 3.9E-96 T 26-04-2016 RGE_RS04910 e47a966a4eb890a2b38f34d213c55920 290 Gene3D G3DSA:1.10.10.10 7 90 7.1E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04910 e47a966a4eb890a2b38f34d213c55920 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.6E-7 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04910 e47a966a4eb890a2b38f34d213c55920 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.6E-7 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04910 e47a966a4eb890a2b38f34d213c55920 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.6E-7 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04910 e47a966a4eb890a2b38f34d213c55920 290 Gene3D G3DSA:3.40.190.10 95 193 4.9E-21 T 26-04-2016 RGE_RS04910 e47a966a4eb890a2b38f34d213c55920 290 PANTHER PTHR30537:SF3 1 289 2.4E-74 T 26-04-2016 RGE_RS04910 e47a966a4eb890a2b38f34d213c55920 290 Pfam PF03466 LysR substrate binding domain 90 287 5.5E-28 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS04910 e47a966a4eb890a2b38f34d213c55920 290 SUPERFAMILY SSF53850 91 288 3.98E-33 T 26-04-2016 RGE_RS04910 e47a966a4eb890a2b38f34d213c55920 290 PANTHER PTHR30537 1 289 2.4E-74 T 26-04-2016 RGE_RS04910 e47a966a4eb890a2b38f34d213c55920 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.6E-16 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04910 e47a966a4eb890a2b38f34d213c55920 290 SUPERFAMILY SSF46785 5 114 1.23E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00200 e9a7922d302a1caa62c44c44348a7353 318 SUPERFAMILY SSF53335 28 214 4.59E-11 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS00200 e9a7922d302a1caa62c44c44348a7353 318 SUPERFAMILY SSF53335 271 305 4.59E-11 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS00200 e9a7922d302a1caa62c44c44348a7353 318 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 13 306 9.1E-119 T 26-04-2016 IPR017804 Methyltransferase EgtD-like RGE_RS00200 e9a7922d302a1caa62c44c44348a7353 318 Gene3D G3DSA:3.40.50.150 68 183 1.5E-5 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS00200 e9a7922d302a1caa62c44c44348a7353 318 Gene3D G3DSA:3.40.50.150 270 299 1.5E-5 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS00200 e9a7922d302a1caa62c44c44348a7353 318 PANTHER PTHR30468:SF6 20 308 3.0E-71 T 26-04-2016 RGE_RS00200 e9a7922d302a1caa62c44c44348a7353 318 PANTHER PTHR30468 20 308 3.0E-71 T 26-04-2016 RGE_RS00200 e9a7922d302a1caa62c44c44348a7353 318 PIRSF PIRSF018005 3 309 3.2E-110 T 26-04-2016 IPR017804 Methyltransferase EgtD-like RGE_RS00200 e9a7922d302a1caa62c44c44348a7353 318 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 181 304 1.2E-40 T 26-04-2016 IPR019257 Histidine-specific methyltransferase, SAM-dependent RGE_RS21540 2d521053e2982d3cc45ac17a058ebfa7 108 Gene3D G3DSA:3.40.30.10 5 103 6.8E-33 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS21540 2d521053e2982d3cc45ac17a058ebfa7 108 SUPERFAMILY SSF52833 4 103 2.12E-28 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS21540 2d521053e2982d3cc45ac17a058ebfa7 108 PANTHER PTHR11780:SF12 5 103 3.5E-27 T 26-04-2016 RGE_RS21540 2d521053e2982d3cc45ac17a058ebfa7 108 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 19 89 2.9E-6 T 26-04-2016 RGE_RS21540 2d521053e2982d3cc45ac17a058ebfa7 108 PANTHER PTHR11780 5 103 3.5E-27 T 26-04-2016 RGE_RS10020 f995aa6561cd83dfff1a56e73890e0f3 170 Pfam PF02293 AmiS/UreI family transporter 1 167 1.1E-57 T 26-04-2016 IPR003211 AmiS/UreI transporter GO:0006810|GO:0016020 RGE_RS08275 2b4151508765a2a5a87bcee3ad640b58 98 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 83 96 1.0E-10 T 26-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RGE_RS08275 2b4151508765a2a5a87bcee3ad640b58 98 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 27 43 1.0E-10 T 26-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RGE_RS08275 2b4151508765a2a5a87bcee3ad640b58 98 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 62 78 1.0E-10 T 26-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RGE_RS08275 2b4151508765a2a5a87bcee3ad640b58 98 PANTHER PTHR34653 18 98 5.0E-19 T 26-04-2016 RGE_RS08275 2b4151508765a2a5a87bcee3ad640b58 98 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 4 98 14.866 T 26-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RGE_RS08275 2b4151508765a2a5a87bcee3ad640b58 98 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 26 98 1.1E-19 T 26-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RGE_RS08275 2b4151508765a2a5a87bcee3ad640b58 98 Pfam PF02049 Flagellar hook-basal body complex protein FliE 18 98 1.2E-26 T 26-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RGE_RS17415 6477438441d4fed0e611bfd3c7be30e4 193 SUPERFAMILY SSF46557 30 105 1.44E-25 T 26-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RGE_RS17415 6477438441d4fed0e611bfd3c7be30e4 193 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 30 184 3.1E-59 T 26-04-2016 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 RGE_RS17415 6477438441d4fed0e611bfd3c7be30e4 193 Gene3D G3DSA:1.10.287.180 30 101 1.1E-22 T 26-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RGE_RS17415 6477438441d4fed0e611bfd3c7be30e4 193 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 44 75 - T 26-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RGE_RS17415 6477438441d4fed0e611bfd3c7be30e4 193 Pfam PF03449 Transcription elongation factor, N-terminal 31 101 7.9E-24 T 26-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RGE_RS17415 6477438441d4fed0e611bfd3c7be30e4 193 Hamap MF_00105 Transcription elongation factor GreA [greA]. 29 182 24.949 T 26-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RGE_RS17415 6477438441d4fed0e611bfd3c7be30e4 193 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 110 183 5.9E-21 T 26-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RGE_RS17415 6477438441d4fed0e611bfd3c7be30e4 193 SUPERFAMILY SSF54534 109 183 2.88E-18 T 26-04-2016 RGE_RS17415 6477438441d4fed0e611bfd3c7be30e4 193 Gene3D G3DSA:3.10.50.30 109 184 7.0E-25 T 26-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RGE_RS17415 6477438441d4fed0e611bfd3c7be30e4 193 PANTHER PTHR30437:SF6 1 191 1.7E-55 T 26-04-2016 RGE_RS17415 6477438441d4fed0e611bfd3c7be30e4 193 Hamap MF_00930 Transcription elongation factor GreB [greB]. 28 184 48.775 T 26-04-2016 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 RGE_RS17415 6477438441d4fed0e611bfd3c7be30e4 193 PANTHER PTHR30437 1 191 1.7E-55 T 26-04-2016 RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 SUPERFAMILY SSF52743 351 674 2.36E-66 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 Gene3D G3DSA:3.40.50.200 300 674 2.4E-70 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 PANTHER PTHR10795:SF419 328 592 1.5E-47 T 26-04-2016 RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 PANTHER PTHR10795:SF419 9 15 1.5E-47 T 26-04-2016 RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 PANTHER PTHR10795:SF419 609 679 1.5E-47 T 26-04-2016 RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 SUPERFAMILY SSF89260 102 186 3.27E-6 T 26-04-2016 RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 PANTHER PTHR10795 328 592 1.5E-47 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 PANTHER PTHR10795 9 15 1.5E-47 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 PANTHER PTHR10795 609 679 1.5E-47 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 PRINTS PR00723 Subtilisin serine protease family (S8) signature 416 429 1.4E-14 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 PRINTS PR00723 Subtilisin serine protease family (S8) signature 610 626 1.4E-14 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 PRINTS PR00723 Subtilisin serine protease family (S8) signature 361 380 1.4E-14 T 26-04-2016 IPR015500 Peptidase S8, subtilisin-related RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 420 430 - T 26-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 366 377 - T 26-04-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 108 174 8.3E-7 T 26-04-2016 IPR007280 Peptidase, C-terminal, archaeal/bacterial RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 Pfam PF00082 Subtilase family 364 663 1.8E-41 T 26-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RGE_RS02450 b6683fab757b00afdfc9ad393413a83b 895 Gene3D G3DSA:2.60.120.380 66 186 1.6E-10 T 26-04-2016 RGE_RS00650 b731f7e3ab9759eb02aafc6477d4c2ab 474 Gene3D G3DSA:3.40.50.1220 299 473 1.8E-83 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS00650 b731f7e3ab9759eb02aafc6477d4c2ab 474 PANTHER PTHR10160:SF24 4 473 2.0E-221 T 26-04-2016 RGE_RS00650 b731f7e3ab9759eb02aafc6477d4c2ab 474 SUPERFAMILY SSF52467 302 473 1.43E-70 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS00650 b731f7e3ab9759eb02aafc6477d4c2ab 474 PIRSF PIRSF000204 1 474 6.4E-206 T 26-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RGE_RS00650 b731f7e3ab9759eb02aafc6477d4c2ab 474 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 471 5.0E-183 T 26-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RGE_RS00650 b731f7e3ab9759eb02aafc6477d4c2ab 474 PANTHER PTHR10160 4 473 2.0E-221 T 26-04-2016 RGE_RS18635 91dd9929e6fe1c902f392b90d154f9f4 451 SUPERFAMILY SSF51338 352 447 6.19E-6 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS18635 91dd9929e6fe1c902f392b90d154f9f4 451 Pfam PF01979 Amidohydrolase family 54 428 2.3E-30 T 26-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RGE_RS18635 91dd9929e6fe1c902f392b90d154f9f4 451 SUPERFAMILY SSF51556 55 377 2.34E-64 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS18635 91dd9929e6fe1c902f392b90d154f9f4 451 PANTHER PTHR11271:SF4 10 449 1.1E-120 T 26-04-2016 IPR010252 Formiminoglutamate deiminase RGE_RS18635 91dd9929e6fe1c902f392b90d154f9f4 451 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 7 433 1.1E-145 T 26-04-2016 IPR010252 Formiminoglutamate deiminase RGE_RS18635 91dd9929e6fe1c902f392b90d154f9f4 451 Gene3D G3DSA:3.20.20.140 57 396 1.1E-68 T 26-04-2016 RGE_RS18635 91dd9929e6fe1c902f392b90d154f9f4 451 PANTHER PTHR11271 10 449 1.1E-120 T 26-04-2016 RGE_RS16005 81988f58b5d40eb4e7d9ea3953b058c2 536 Pfam PF01039 Carboxyl transferase domain 49 523 7.5E-122 T 26-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS16005 81988f58b5d40eb4e7d9ea3953b058c2 536 SUPERFAMILY SSF52096 33 270 1.66E-60 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS16005 81988f58b5d40eb4e7d9ea3953b058c2 536 Gene3D G3DSA:3.90.226.10 279 523 2.9E-77 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS16005 81988f58b5d40eb4e7d9ea3953b058c2 536 Gene3D G3DSA:3.90.226.10 36 271 1.0E-57 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS16005 81988f58b5d40eb4e7d9ea3953b058c2 536 SUPERFAMILY SSF52096 237 515 5.27E-77 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS16005 81988f58b5d40eb4e7d9ea3953b058c2 536 PANTHER PTHR22855:SF29 6 536 6.6E-279 T 26-04-2016 RGE_RS16005 81988f58b5d40eb4e7d9ea3953b058c2 536 PANTHER PTHR22855 6 536 6.6E-279 T 26-04-2016 RGE_RS21805 ea1abc386fd7e895ec6eeeb46af092d4 192 Pfam PF14334 Domain of unknown function (DUF4390) 33 184 8.1E-47 T 26-04-2016 IPR025500 Protein of unknown function DUF4390 RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 SUPERFAMILY SSF52343 129 267 1.44E-19 T 26-04-2016 RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 PANTHER PTHR19384:SF69 23 284 2.4E-25 T 26-04-2016 RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 104 113 2.3E-14 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 140 159 2.3E-14 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 67 74 2.3E-14 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 239 247 2.3E-14 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 167 176 2.3E-14 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 Pfam PF00175 Oxidoreductase NAD-binding domain 141 250 3.7E-11 T 26-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 Gene3D G3DSA:2.40.30.10 12 124 1.8E-21 T 26-04-2016 RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 PANTHER PTHR19384 23 284 2.4E-25 T 26-04-2016 RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 SUPERFAMILY SSF63380 14 132 2.41E-23 T 26-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 Pfam PF00970 Oxidoreductase FAD-binding domain 30 127 1.9E-7 T 26-04-2016 IPR008333 Oxidoreductase, FAD-binding domain RGE_RS10260 18d0a2ff5892e8b4cad610057f2cfbbc 284 Gene3D G3DSA:3.40.50.80 125 281 6.1E-20 T 26-04-2016 RGE_RS20085 56930162300f4ad2a46f7c0ed3a6b840 327 Gene3D G3DSA:3.40.47.10 7 169 1.4E-65 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS20085 56930162300f4ad2a46f7c0ed3a6b840 327 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 5 327 69.083 T 26-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RGE_RS20085 56930162300f4ad2a46f7c0ed3a6b840 327 Gene3D G3DSA:3.40.47.10 170 325 5.8E-52 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS20085 56930162300f4ad2a46f7c0ed3a6b840 327 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 238 326 2.3E-35 T 26-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RGE_RS20085 56930162300f4ad2a46f7c0ed3a6b840 327 PANTHER PTHR18919:SF109 35 325 4.4E-122 T 26-04-2016 RGE_RS20085 56930162300f4ad2a46f7c0ed3a6b840 327 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 115 192 1.1E-33 T 26-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RGE_RS20085 56930162300f4ad2a46f7c0ed3a6b840 327 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 7 326 5.1E-119 T 26-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RGE_RS20085 56930162300f4ad2a46f7c0ed3a6b840 327 PANTHER PTHR18919 35 325 4.4E-122 T 26-04-2016 RGE_RS20085 56930162300f4ad2a46f7c0ed3a6b840 327 SUPERFAMILY SSF53901 3 325 4.2E-71 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS10370 9d7221135ea2ef5189947a80ff8295c3 131 Pfam PF02300 Fumarate reductase subunit C 9 126 2.7E-37 T 26-04-2016 IPR003510 Fumarate reductase, subunit C GO:0016020 RGE_RS10370 9d7221135ea2ef5189947a80ff8295c3 131 Gene3D G3DSA:1.20.1300.10 9 126 5.8E-35 T 26-04-2016 RGE_RS10370 9d7221135ea2ef5189947a80ff8295c3 131 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 11 108 5.0E-14 T 26-04-2016 IPR003510 Fumarate reductase, subunit C GO:0016020 RGE_RS10370 9d7221135ea2ef5189947a80ff8295c3 131 SUPERFAMILY SSF81343 8 126 3.6E-29 T 26-04-2016 RGE_RS17470 43fd1f7fa36d57427eb23a399dbb3ad2 148 PIRSF PIRSF038934 7 140 1.7E-31 T 26-04-2016 IPR010893 [NiFe]-hydrogenase maturation factor HyaE RGE_RS17470 43fd1f7fa36d57427eb23a399dbb3ad2 148 Gene3D G3DSA:3.40.30.10 24 92 4.4E-31 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS17470 43fd1f7fa36d57427eb23a399dbb3ad2 148 Gene3D G3DSA:3.40.30.10 93 128 1.0E-4 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS17470 43fd1f7fa36d57427eb23a399dbb3ad2 148 Pfam PF07449 Hydrogenase-1 expression protein HyaE 13 119 1.3E-36 T 26-04-2016 IPR010893 [NiFe]-hydrogenase maturation factor HyaE RGE_RS17470 43fd1f7fa36d57427eb23a399dbb3ad2 148 SUPERFAMILY SSF52833 11 134 1.91E-24 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS10030 67c51364031bb57ae507464fb693bd44 96 SMART SM00834 1 41 3.7E-9 T 26-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RGE_RS10030 67c51364031bb57ae507464fb693bd44 96 Pfam PF09723 Zinc ribbon domain 1 40 7.0E-9 T 26-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RGE_RS10030 67c51364031bb57ae507464fb693bd44 96 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 45 6.1E-10 T 26-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RGE_RS21005 a666cf5299e858a3c5a1642ba6bd84a8 116 Gene3D G3DSA:3.10.20.30 12 113 5.5E-27 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS21005 a666cf5299e858a3c5a1642ba6bd84a8 116 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 8 115 1.0E-39 T 26-04-2016 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 RGE_RS21005 a666cf5299e858a3c5a1642ba6bd84a8 116 SUPERFAMILY SSF54292 10 113 1.89E-25 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS21005 a666cf5299e858a3c5a1642ba6bd84a8 116 PANTHER PTHR23426 12 115 8.9E-27 T 26-04-2016 RGE_RS21005 a666cf5299e858a3c5a1642ba6bd84a8 116 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 19 96 3.3E-11 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 SUPERFAMILY SSF52172 2 127 3.84E-29 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 Gene3D G3DSA:1.10.10.10 152 208 5.4E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 SUPERFAMILY SSF46894 139 208 2.99E-18 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 202 8.2E-15 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 PANTHER PTHR26402:SF151 3 208 2.2E-53 T 26-04-2016 RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 3.5E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 3.5E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 3.5E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 PANTHER PTHR26402 3 208 2.2E-53 T 26-04-2016 RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 SMART SM00421 145 202 3.3E-15 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 SMART SM00448 3 115 5.4E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 Gene3D G3DSA:3.40.50.2300 2 151 6.9E-33 T 26-04-2016 RGE_RS19885 a47b5e1975e199dab3b075f885de9a46 213 Pfam PF00072 Response regulator receiver domain 5 115 8.6E-24 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS05120 17e3c8363796a420e4f7c3d00b9683e1 775 Pfam PF07793 Protein of unknown function (DUF1631) 9 766 1.5E-89 T 26-04-2016 IPR012434 Protein of unknown function DUF1631 RGE_RS15825 bfdd48fb559aecc4dc5d31f6732966bf 344 SUPERFAMILY SSF47413 16 74 1.01E-14 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS15825 bfdd48fb559aecc4dc5d31f6732966bf 344 Pfam PF00356 Bacterial regulatory proteins, lacI family 18 63 9.4E-13 T 26-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RGE_RS15825 bfdd48fb559aecc4dc5d31f6732966bf 344 Pfam PF13377 Periplasmic binding protein-like domain 183 344 3.0E-31 T 26-04-2016 RGE_RS15825 bfdd48fb559aecc4dc5d31f6732966bf 344 SMART SM00354 16 86 7.1E-21 T 26-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RGE_RS15825 bfdd48fb559aecc4dc5d31f6732966bf 344 SUPERFAMILY SSF53822 75 341 9.6E-55 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS15825 bfdd48fb559aecc4dc5d31f6732966bf 344 Gene3D G3DSA:3.40.50.2300 185 344 3.5E-47 T 26-04-2016 RGE_RS15825 bfdd48fb559aecc4dc5d31f6732966bf 344 Gene3D G3DSA:3.40.50.2300 73 184 3.8E-28 T 26-04-2016 RGE_RS15825 bfdd48fb559aecc4dc5d31f6732966bf 344 PANTHER PTHR30146 16 344 2.3E-123 T 26-04-2016 RGE_RS15825 bfdd48fb559aecc4dc5d31f6732966bf 344 Gene3D G3DSA:1.10.260.40 16 72 8.9E-20 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS15825 bfdd48fb559aecc4dc5d31f6732966bf 344 PANTHER PTHR30146:SF2 16 344 2.3E-123 T 26-04-2016 RGE_RS15825 bfdd48fb559aecc4dc5d31f6732966bf 344 ProSitePatterns PS00356 LacI-type HTH domain signature. 19 37 - T 26-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 RGE_RS09170 060eb9d638b48a335ac7a799a02ea205 243 Gene3D G3DSA:3.40.1010.10 2 117 1.9E-25 T 26-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RGE_RS09170 060eb9d638b48a335ac7a799a02ea205 243 PANTHER PTHR21091 1 168 4.2E-38 T 26-04-2016 RGE_RS09170 060eb9d638b48a335ac7a799a02ea205 243 SUPERFAMILY SSF53790 1 241 8.9E-53 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09170 060eb9d638b48a335ac7a799a02ea205 243 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 212 8.7E-36 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09170 060eb9d638b48a335ac7a799a02ea205 243 PANTHER PTHR21091:SF9 1 168 4.2E-38 T 26-04-2016 RGE_RS09170 060eb9d638b48a335ac7a799a02ea205 243 Gene3D G3DSA:3.30.950.10 118 231 5.8E-10 T 26-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RGE_RS09170 060eb9d638b48a335ac7a799a02ea205 243 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 5 242 9.1E-89 T 26-04-2016 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 RGE_RS04965 745f1825f7ed26333aeb08fb44d0b86d 192 Pfam PF04972 BON domain 122 188 6.6E-16 T 26-04-2016 IPR007055 BON domain RGE_RS04965 745f1825f7ed26333aeb08fb44d0b86d 192 SMART SM00749 126 189 6.0E-5 T 26-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria RGE_RS03770 d79f021f937020d06117f3648555f4b7 422 Pfam PF00501 AMP-binding enzyme 151 286 2.0E-10 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS03770 d79f021f937020d06117f3648555f4b7 422 Gene3D G3DSA:3.40.50.980 151 249 4.3E-9 T 26-04-2016 RGE_RS03770 d79f021f937020d06117f3648555f4b7 422 PANTHER PTHR36932 6 374 9.7E-70 T 26-04-2016 RGE_RS03770 d79f021f937020d06117f3648555f4b7 422 Gene3D G3DSA:3.30.300.30 325 411 3.9E-14 T 26-04-2016 RGE_RS03770 d79f021f937020d06117f3648555f4b7 422 PANTHER PTHR36932:SF1 6 374 9.7E-70 T 26-04-2016 RGE_RS03770 d79f021f937020d06117f3648555f4b7 422 Pfam PF14535 AMP-binding enzyme C-terminal domain 335 411 4.1E-6 T 26-04-2016 IPR028154 AMP-dependent ligase, C-terminal RGE_RS03770 d79f021f937020d06117f3648555f4b7 422 SUPERFAMILY SSF56801 125 392 5.49E-33 T 26-04-2016 RGE_RS08685 cbacba0429c166113e3f5114c8fa3867 210 SUPERFAMILY SSF52317 1 176 2.25E-28 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS08685 cbacba0429c166113e3f5114c8fa3867 210 Gene3D G3DSA:3.40.50.880 1 191 2.5E-48 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS08685 cbacba0429c166113e3f5114c8fa3867 210 Pfam PF01965 DJ-1/PfpI family 2 157 3.0E-12 T 26-04-2016 IPR002818 DJ-1/PfpI RGE_RS19390 69dc3f12d5fb964e4e59cffaf64371d4 327 Pfam PF08378 Nuclease-related domain 42 161 2.3E-17 T 26-04-2016 IPR011528 Nuclease-related domain, NERD RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 Pfam PF01578 Cytochrome C assembly protein 89 295 6.3E-53 T 26-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 5.7E-92 T 26-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 5.7E-92 T 26-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 5.7E-92 T 26-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 5.7E-92 T 26-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 5.7E-92 T 26-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 5.7E-92 T 26-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 5.7E-92 T 26-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 5.7E-92 T 26-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PANTHER PTHR30009:SF0 1 417 3.0E-299 T 26-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PANTHER PTHR30009:SF0 472 658 3.0E-299 T 26-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 4.4E-57 T 26-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 4.4E-57 T 26-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 633 646 4.4E-57 T 26-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 4.4E-57 T 26-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 4.4E-57 T 26-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 4.4E-57 T 26-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 4.4E-57 T 26-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 643 8.5E-235 T 26-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PANTHER PTHR30009 1 417 3.0E-299 T 26-04-2016 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 PANTHER PTHR30009 472 658 3.0E-299 T 26-04-2016 RGE_RS10775 c22b9f63618660e33ff7a88671f9a10d 662 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 640 1.1E-131 T 26-04-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal RGE_RS02635 128e3b29618dcc8d7bdc36df30b93192 299 Gene3D G3DSA:3.90.850.10 68 281 1.1E-69 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS02635 128e3b29618dcc8d7bdc36df30b93192 299 PANTHER PTHR11820 1 290 6.2E-101 T 26-04-2016 RGE_RS02635 128e3b29618dcc8d7bdc36df30b93192 299 PANTHER PTHR11820:SF6 1 290 6.2E-101 T 26-04-2016 RGE_RS02635 128e3b29618dcc8d7bdc36df30b93192 299 SUPERFAMILY SSF56529 67 279 9.68E-68 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS02635 128e3b29618dcc8d7bdc36df30b93192 299 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 76 277 1.8E-56 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS21860 7c79604d1d6e7f71963b94d10096f7d9 307 PANTHER PTHR12835 82 302 4.3E-37 T 26-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RGE_RS21860 7c79604d1d6e7f71963b94d10096f7d9 307 PANTHER PTHR12835 1 55 4.3E-37 T 26-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RGE_RS21860 7c79604d1d6e7f71963b94d10096f7d9 307 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 87 300 2.0E-35 T 26-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RGE_RS21860 7c79604d1d6e7f71963b94d10096f7d9 307 Pfam PF03099 Biotin/lipoate A/B protein ligase family 93 196 1.5E-9 T 26-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RGE_RS21860 7c79604d1d6e7f71963b94d10096f7d9 307 SUPERFAMILY SSF50037 261 301 5.49E-5 T 26-04-2016 IPR008988 Transcriptional repressor, C-terminal RGE_RS21860 7c79604d1d6e7f71963b94d10096f7d9 307 Gene3D G3DSA:3.30.930.10 23 255 3.3E-50 T 26-04-2016 RGE_RS21860 7c79604d1d6e7f71963b94d10096f7d9 307 Gene3D G3DSA:2.30.30.100 265 304 1.1E-8 T 26-04-2016 RGE_RS21860 7c79604d1d6e7f71963b94d10096f7d9 307 SUPERFAMILY SSF55681 23 59 1.82E-36 T 26-04-2016 RGE_RS21860 7c79604d1d6e7f71963b94d10096f7d9 307 SUPERFAMILY SSF55681 90 254 1.82E-36 T 26-04-2016 RGE_RS15235 a21f971eef67a46134ccd8f192c92f42 190 PANTHER PTHR10681 1 177 1.9E-28 T 26-04-2016 RGE_RS15235 a21f971eef67a46134ccd8f192c92f42 190 Pfam PF00578 AhpC/TSA family 28 156 8.5E-25 T 26-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RGE_RS15235 a21f971eef67a46134ccd8f192c92f42 190 SUPERFAMILY SSF52833 24 177 4.31E-36 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS15235 a21f971eef67a46134ccd8f192c92f42 190 Gene3D G3DSA:3.40.30.10 24 177 3.6E-35 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS12085 131d2107a6fc90a51e4afd0641fb449b 318 SUPERFAMILY SSF53756 24 316 8.07E-23 T 26-04-2016 RGE_RS12085 131d2107a6fc90a51e4afd0641fb449b 318 Gene3D G3DSA:3.40.50.2000 200 293 3.9E-8 T 26-04-2016 RGE_RS12085 131d2107a6fc90a51e4afd0641fb449b 318 PANTHER PTHR12526 204 317 3.3E-15 T 26-04-2016 RGE_RS12085 131d2107a6fc90a51e4afd0641fb449b 318 Pfam PF00534 Glycosyl transferases group 1 205 294 1.3E-7 T 26-04-2016 IPR001296 Glycosyl transferase, family 1 RGE_RS12085 131d2107a6fc90a51e4afd0641fb449b 318 PANTHER PTHR12526:SF397 204 317 3.3E-15 T 26-04-2016 RGE_RS22720 9a576e6c8a64f5903a9c1f781dca1830 386 PIRSF PIRSF001554 1 386 3.5E-150 T 26-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RGE_RS22720 9a576e6c8a64f5903a9c1f781dca1830 386 PANTHER PTHR11815 1 386 8.3E-223 T 26-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RGE_RS22720 9a576e6c8a64f5903a9c1f781dca1830 386 Gene3D G3DSA:3.40.50.261 241 383 4.8E-65 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS22720 9a576e6c8a64f5903a9c1f781dca1830 386 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 41.497 T 26-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RGE_RS22720 9a576e6c8a64f5903a9c1f781dca1830 386 Gene3D G3DSA:3.30.470.20 96 239 1.1E-55 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS22720 9a576e6c8a64f5903a9c1f781dca1830 386 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 7.1E-158 T 26-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RGE_RS22720 9a576e6c8a64f5903a9c1f781dca1830 386 SUPERFAMILY SSF52210 239 385 9.42E-55 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS22720 9a576e6c8a64f5903a9c1f781dca1830 386 Gene3D G3DSA:3.30.1490.20 22 95 4.9E-35 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS22720 9a576e6c8a64f5903a9c1f781dca1830 386 SUPERFAMILY SSF56059 1 238 1.66E-82 T 26-04-2016 RGE_RS22720 9a576e6c8a64f5903a9c1f781dca1830 386 Pfam PF08442 ATP-grasp domain 2 202 1.0E-78 T 26-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS22720 9a576e6c8a64f5903a9c1f781dca1830 386 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 26-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS22720 9a576e6c8a64f5903a9c1f781dca1830 386 Pfam PF00549 CoA-ligase 262 380 3.6E-26 T 26-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 PIRSF PIRSF000171 2 578 3.6E-37 T 26-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 SUPERFAMILY SSF46977 455 597 1.16E-39 T 26-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 SUPERFAMILY SSF51905 361 435 6.05E-79 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 SUPERFAMILY SSF51905 7 262 6.05E-79 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 12 34 9.3E-6 T 26-04-2016 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 385 392 9.3E-6 T 26-04-2016 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 46 55 - T 26-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 Gene3D G3DSA:3.90.700.10 246 352 1.2E-40 T 26-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 Pfam PF00890 FAD binding domain 12 407 3.3E-114 T 26-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 Pfam PF02910 Fumarate reductase flavoprotein C-term 464 596 1.9E-36 T 26-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 Gene3D G3DSA:3.50.50.60 7 245 1.9E-119 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 Gene3D G3DSA:3.50.50.60 353 427 1.9E-119 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 PANTHER PTHR11632 6 592 3.7E-304 T 26-04-2016 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 SUPERFAMILY SSF56425 239 357 1.36E-41 T 26-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 9 597 1.1E-274 T 26-04-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 PANTHER PTHR11632:SF5 6 592 3.7E-304 T 26-04-2016 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 Gene3D G3DSA:4.10.80.40 565 597 8.3E-22 T 26-04-2016 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 Gene3D G3DSA:1.20.58.100 449 564 1.8E-32 T 26-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RGE_RS06005 eba6f25e4a530a786ef6a7731cb83a05 597 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 12 596 6.8E-233 T 26-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RGE_RS20250 d5d1194ea3f05c1e219ff8eea89ff40a 195 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 32 65 1.7E-8 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS20250 d5d1194ea3f05c1e219ff8eea89ff40a 195 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 104 135 2.5E-5 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS20250 d5d1194ea3f05c1e219ff8eea89ff40a 195 PANTHER PTHR23416 17 162 5.2E-48 T 26-04-2016 RGE_RS20250 d5d1194ea3f05c1e219ff8eea89ff40a 195 PANTHER PTHR23416:SF53 17 162 5.2E-48 T 26-04-2016 RGE_RS20250 d5d1194ea3f05c1e219ff8eea89ff40a 195 Gene3D G3DSA:2.160.10.10 2 156 1.6E-42 T 26-04-2016 RGE_RS20250 d5d1194ea3f05c1e219ff8eea89ff40a 195 SUPERFAMILY SSF51161 3 166 5.58E-45 T 26-04-2016 IPR011004 Trimeric LpxA-like RGE_RS01500 b68bef8c19168e7b4363352f2558bf5b 344 SUPERFAMILY SSF47648 6 72 1.27E-16 T 26-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RGE_RS01500 b68bef8c19168e7b4363352f2558bf5b 344 Gene3D G3DSA:1.20.970.10 7 72 7.6E-27 T 26-04-2016 RGE_RS01500 b68bef8c19168e7b4363352f2558bf5b 344 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 10 336 3.0E-128 T 26-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 RGE_RS01500 b68bef8c19168e7b4363352f2558bf5b 344 PANTHER PTHR11922 1 340 5.1E-116 T 26-04-2016 RGE_RS01500 b68bef8c19168e7b4363352f2558bf5b 344 Gene3D G3DSA:3.40.1030.10 76 339 1.3E-110 T 26-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RGE_RS01500 b68bef8c19168e7b4363352f2558bf5b 344 SUPERFAMILY SSF52418 78 340 5.76E-99 T 26-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RGE_RS01500 b68bef8c19168e7b4363352f2558bf5b 344 Pfam PF00591 Glycosyl transferase family, a/b domain 78 327 3.2E-96 T 26-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RGE_RS01500 b68bef8c19168e7b4363352f2558bf5b 344 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 68 1.7E-12 T 26-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RGE_RS01500 b68bef8c19168e7b4363352f2558bf5b 344 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 7 337 37.642 T 26-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 RGE_RS01500 b68bef8c19168e7b4363352f2558bf5b 344 PANTHER PTHR11922:SF5 1 340 5.1E-116 T 26-04-2016 RGE_RS12415 6bea7c38d3082e0d264bfc22065b431a 233 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 222 8.3E-15 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12415 6bea7c38d3082e0d264bfc22065b431a 233 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 23 116 6.8E-25 T 26-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RGE_RS12415 6bea7c38d3082e0d264bfc22065b431a 233 PANTHER PTHR30614 1 228 6.2E-76 T 26-04-2016 RGE_RS12415 6bea7c38d3082e0d264bfc22065b431a 233 SUPERFAMILY SSF161098 21 208 1.7E-41 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12415 6bea7c38d3082e0d264bfc22065b431a 233 Gene3D G3DSA:1.10.3720.10 22 223 8.7E-46 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS22840 f9cbcf80c7ef7878e99b446afa88ddc7 312 Gene3D G3DSA:1.10.3720.10 88 307 7.2E-22 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS22840 f9cbcf80c7ef7878e99b446afa88ddc7 312 PANTHER PTHR30465:SF24 1 311 6.4E-96 T 26-04-2016 RGE_RS22840 f9cbcf80c7ef7878e99b446afa88ddc7 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 309 6.9E-38 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS22840 f9cbcf80c7ef7878e99b446afa88ddc7 312 SUPERFAMILY SSF161098 89 297 8.37E-19 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS22840 f9cbcf80c7ef7878e99b446afa88ddc7 312 PANTHER PTHR30465 1 311 6.4E-96 T 26-04-2016 RGE_RS22175 62a69ec637ec81ef6c421741ef84e1d7 384 Gene3D G3DSA:3.40.50.1820 232 367 1.3E-35 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS22175 62a69ec637ec81ef6c421741ef84e1d7 384 Gene3D G3DSA:3.40.50.1820 25 200 1.3E-35 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS22175 62a69ec637ec81ef6c421741ef84e1d7 384 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 15 367 2.2E-135 T 26-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 RGE_RS22175 62a69ec637ec81ef6c421741ef84e1d7 384 PANTHER PTHR32268:SF11 3 374 5.0E-167 T 26-04-2016 RGE_RS22175 62a69ec637ec81ef6c421741ef84e1d7 384 Hamap MF_00296 Homoserine O-acetyltransferase [metX]. 2 369 47.904 T 26-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 RGE_RS22175 62a69ec637ec81ef6c421741ef84e1d7 384 SUPERFAMILY SSF53474 8 368 3.07E-101 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS22175 62a69ec637ec81ef6c421741ef84e1d7 384 Pfam PF00561 alpha/beta hydrolase fold 45 356 5.1E-35 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS22175 62a69ec637ec81ef6c421741ef84e1d7 384 PANTHER PTHR32268 3 374 5.0E-167 T 26-04-2016 RGE_RS22175 62a69ec637ec81ef6c421741ef84e1d7 384 PIRSF PIRSF000443 1 375 1.3E-133 T 26-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 PANTHER PTHR10584:SF166 15 314 6.6E-87 T 26-04-2016 RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 Gene3D G3DSA:3.40.1190.20 15 313 9.4E-90 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 75 - T 26-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 260 273 - T 26-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 Pfam PF00294 pfkB family carbohydrate kinase 16 308 3.2E-68 T 26-04-2016 IPR011611 Carbohydrate kinase PfkB RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 PANTHER PTHR10584 15 314 6.6E-87 T 26-04-2016 RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 PRINTS PR00990 Ribokinase signature 118 131 1.4E-29 T 26-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 PRINTS PR00990 Ribokinase signature 186 201 1.4E-29 T 26-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 PRINTS PR00990 Ribokinase signature 19 40 1.4E-29 T 26-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 PRINTS PR00990 Ribokinase signature 230 241 1.4E-29 T 26-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 PRINTS PR00990 Ribokinase signature 46 65 1.4E-29 T 26-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 17 310 1.5E-92 T 26-04-2016 IPR011877 Ribokinase, bacterial type GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|UniPathway: UPA00916 RGE_RS08700 c29609920d90a0c2f424d770f1c3de37 336 SUPERFAMILY SSF53613 16 311 5.46E-80 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS18195 274f12152d9935cbd3e65d2d3598c843 296 Gene3D G3DSA:3.40.50.620 148 291 7.7E-24 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS18195 274f12152d9935cbd3e65d2d3598c843 296 Gene3D G3DSA:3.40.50.620 5 147 1.4E-30 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS18195 274f12152d9935cbd3e65d2d3598c843 296 PANTHER PTHR31964 7 163 2.2E-24 T 26-04-2016 RGE_RS18195 274f12152d9935cbd3e65d2d3598c843 296 PANTHER PTHR31964:SF26 7 163 2.2E-24 T 26-04-2016 RGE_RS18195 274f12152d9935cbd3e65d2d3598c843 296 SUPERFAMILY SSF52402 152 291 1.0E-22 T 26-04-2016 RGE_RS18195 274f12152d9935cbd3e65d2d3598c843 296 SUPERFAMILY SSF52402 7 146 2.6E-29 T 26-04-2016 RGE_RS18195 274f12152d9935cbd3e65d2d3598c843 296 Pfam PF00582 Universal stress protein family 152 291 1.3E-18 T 26-04-2016 IPR006016 UspA GO:0006950 RGE_RS18195 274f12152d9935cbd3e65d2d3598c843 296 Pfam PF00582 Universal stress protein family 7 145 3.9E-25 T 26-04-2016 IPR006016 UspA GO:0006950 RGE_RS18195 274f12152d9935cbd3e65d2d3598c843 296 PRINTS PR01438 Universal stress protein signature 123 145 1.6E-12 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS18195 274f12152d9935cbd3e65d2d3598c843 296 PRINTS PR01438 Universal stress protein signature 105 117 1.6E-12 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS18195 274f12152d9935cbd3e65d2d3598c843 296 PRINTS PR01438 Universal stress protein signature 4 22 1.6E-12 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS18070 0ce2196d214c79ec4cf356e7924c9a3b 183 Pfam PF13511 Domain of unknown function (DUF4124) 10 54 2.6E-8 T 26-04-2016 IPR025392 Domain of unknown function DUF4124 RGE_RS02725 3dc9cf674c152a9cc3800ee000c07506 138 SUPERFAMILY SSF47175 15 136 1.07E-23 T 26-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RGE_RS02725 3dc9cf674c152a9cc3800ee000c07506 138 PIRSF PIRSF000027 1 137 1.1E-21 T 26-04-2016 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 RGE_RS02725 3dc9cf674c152a9cc3800ee000c07506 138 Gene3D G3DSA:1.20.120.10 15 136 6.8E-23 T 26-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RGE_RS02725 3dc9cf674c152a9cc3800ee000c07506 138 Pfam PF01322 Cytochrome C' 16 135 6.7E-23 T 26-04-2016 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 ProSitePatterns PS01053 Arginase family signature. 229 250 - T 26-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 TIGRFAM TIGR01229 rocF_arginase: arginase 9 303 1.6E-87 T 26-04-2016 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: REACT_13|UniPathway: UPA00158 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 PRINTS PR00116 Arginase signature 97 112 2.7E-46 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 PRINTS PR00116 Arginase signature 226 255 2.7E-46 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 PRINTS PR00116 Arginase signature 261 275 2.7E-46 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 PRINTS PR00116 Arginase signature 178 196 2.7E-46 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 PRINTS PR00116 Arginase signature 124 151 2.7E-46 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 Pfam PF00491 Arginase family 7 299 4.3E-76 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 PIRSF PIRSF036979 3 303 9.9E-31 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 PANTHER PTHR11358 6 301 1.2E-109 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 SUPERFAMILY SSF52768 7 302 1.48E-89 T 26-04-2016 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 PANTHER PTHR11358:SF2 6 301 1.2E-109 T 26-04-2016 RGE_RS18400 38505358dc16aad070cf21c7bf3a20cf 309 Gene3D G3DSA:3.40.800.10 7 301 2.4E-86 T 26-04-2016 IPR023696 Ureohydrolase domain RGE_RS07160 e6632925e22b356d0f664b6de80b24cc 409 Gene3D G3DSA:1.20.1250.20 21 200 1.4E-27 T 26-04-2016 RGE_RS07160 e6632925e22b356d0f664b6de80b24cc 409 Gene3D G3DSA:1.20.1250.20 219 402 2.4E-7 T 26-04-2016 RGE_RS07160 e6632925e22b356d0f664b6de80b24cc 409 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 17 397 8.4E-64 T 26-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 RGE_RS07160 e6632925e22b356d0f664b6de80b24cc 409 PANTHER PTHR23502:SF19 2 403 3.2E-70 T 26-04-2016 RGE_RS07160 e6632925e22b356d0f664b6de80b24cc 409 SUPERFAMILY SSF103473 8 403 3.4E-53 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS07160 e6632925e22b356d0f664b6de80b24cc 409 PANTHER PTHR23502 2 403 3.2E-70 T 26-04-2016 RGE_RS07160 e6632925e22b356d0f664b6de80b24cc 409 Pfam PF07690 Major Facilitator Superfamily 24 362 1.7E-37 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS10295 3f2b22efa48597ce903d17e90d1a4726 457 PANTHER PTHR37419 45 451 6.2E-70 T 26-04-2016 RGE_RS10295 3f2b22efa48597ce903d17e90d1a4726 457 Pfam PF07805 HipA-like N-terminal domain 219 299 8.6E-8 T 26-04-2016 IPR012894 HipA, N-terminal subdomain 2 RGE_RS10295 3f2b22efa48597ce903d17e90d1a4726 457 PANTHER PTHR37419:SF2 45 451 6.2E-70 T 26-04-2016 RGE_RS04745 90a1bb08ac6545aa439e9ddbe2024b25 638 SUPERFAMILY SSF52242 214 308 7.59E-6 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS04745 90a1bb08ac6545aa439e9ddbe2024b25 638 PANTHER PTHR11918 204 533 6.3E-28 T 26-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RGE_RS04745 90a1bb08ac6545aa439e9ddbe2024b25 638 Pfam PF02310 B12 binding domain 210 292 5.0E-7 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS04745 90a1bb08ac6545aa439e9ddbe2024b25 638 SUPERFAMILY SSF102114 347 533 2.16E-21 T 26-04-2016 RGE_RS04745 90a1bb08ac6545aa439e9ddbe2024b25 638 Gene3D G3DSA:3.80.30.20 369 554 9.5E-21 T 26-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RGE_RS04745 90a1bb08ac6545aa439e9ddbe2024b25 638 SMART SM00729 365 578 2.0E-8 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS04745 90a1bb08ac6545aa439e9ddbe2024b25 638 Pfam PF04055 Radical SAM superfamily 368 529 1.1E-7 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS17275 044d346fdfc75525d8ac5ec914816e58 242 Pfam PF00990 Diguanylate cyclase, GGDEF domain 55 213 8.5E-47 T 26-04-2016 IPR000160 GGDEF domain RGE_RS17275 044d346fdfc75525d8ac5ec914816e58 242 SUPERFAMILY SSF55073 59 215 3.77E-46 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS17275 044d346fdfc75525d8ac5ec914816e58 242 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 53 215 2.0E-48 T 26-04-2016 IPR000160 GGDEF domain RGE_RS17275 044d346fdfc75525d8ac5ec914816e58 242 PANTHER PTHR10799:SF750 36 214 8.5E-26 T 26-04-2016 RGE_RS17275 044d346fdfc75525d8ac5ec914816e58 242 Gene3D G3DSA:3.30.70.270 56 216 3.4E-52 T 26-04-2016 RGE_RS17275 044d346fdfc75525d8ac5ec914816e58 242 SMART SM00267 43 217 8.0E-57 T 26-04-2016 IPR000160 GGDEF domain RGE_RS17275 044d346fdfc75525d8ac5ec914816e58 242 PANTHER PTHR10799 36 214 8.5E-26 T 26-04-2016 RGE_RS10235 685995da9bae7a9a72627762b004d1e3 381 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 10 341 9.7E-86 T 26-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 RGE_RS10235 685995da9bae7a9a72627762b004d1e3 381 PANTHER PTHR30578:SF0 1 348 9.0E-83 T 26-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 RGE_RS10235 685995da9bae7a9a72627762b004d1e3 381 Pfam PF03116 NQR2, RnfD, RnfE family 8 340 1.5E-93 T 26-04-2016 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 RGE_RS10235 685995da9bae7a9a72627762b004d1e3 381 Hamap MF_00462 Electron transport complex subunit RsxD [rsxD]. 5 342 21.876 T 26-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 RGE_RS10235 685995da9bae7a9a72627762b004d1e3 381 PANTHER PTHR30578 1 348 9.0E-83 T 26-04-2016 RGE_RS22055 ae5fbcc5995d5a8cf93586988341c1a5 253 SUPERFAMILY SSF55347 114 223 3.49E-37 T 26-04-2016 RGE_RS22055 ae5fbcc5995d5a8cf93586988341c1a5 253 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 137 154 - T 26-04-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS22055 ae5fbcc5995d5a8cf93586988341c1a5 253 PIRSF PIRSF000161 1 253 7.2E-80 T 26-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS22055 ae5fbcc5995d5a8cf93586988341c1a5 253 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 115 251 3.7E-43 T 26-04-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS22055 ae5fbcc5995d5a8cf93586988341c1a5 253 Gene3D G3DSA:3.40.50.720 1 150 9.2E-53 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22055 ae5fbcc5995d5a8cf93586988341c1a5 253 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 1 112 6.0E-33 T 26-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS22055 ae5fbcc5995d5a8cf93586988341c1a5 253 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 252 2.0E-89 T 26-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS22055 ae5fbcc5995d5a8cf93586988341c1a5 253 SUPERFAMILY SSF51735 223 253 7.44E-42 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22055 ae5fbcc5995d5a8cf93586988341c1a5 253 SUPERFAMILY SSF51735 1 113 7.44E-42 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22055 ae5fbcc5995d5a8cf93586988341c1a5 253 PANTHER PTHR20836 1 253 1.1E-87 T 26-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS22055 ae5fbcc5995d5a8cf93586988341c1a5 253 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 252 31.267 T 26-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RGE_RS11415 5780d17483f6723902c8d0844884c566 246 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 198 2.0E-41 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS11415 5780d17483f6723902c8d0844884c566 246 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 7 21 - T 26-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RGE_RS11415 5780d17483f6723902c8d0844884c566 246 PANTHER PTHR21091 1 197 4.7E-49 T 26-04-2016 RGE_RS11415 5780d17483f6723902c8d0844884c566 246 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 2 225 6.6E-67 T 26-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RGE_RS11415 5780d17483f6723902c8d0844884c566 246 PANTHER PTHR21091:SF16 1 197 4.7E-49 T 26-04-2016 RGE_RS11415 5780d17483f6723902c8d0844884c566 246 Gene3D G3DSA:3.30.950.10 117 228 3.9E-22 T 26-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RGE_RS11415 5780d17483f6723902c8d0844884c566 246 Gene3D G3DSA:3.40.1010.10 1 116 8.3E-39 T 26-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RGE_RS11415 5780d17483f6723902c8d0844884c566 246 SUPERFAMILY SSF53790 1 226 9.03E-58 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS17205 40fef229e970b393959f592de5d1e9cb 466 Pfam PF01515 Phosphate acetyl/butaryl transferase 246 457 2.5E-40 T 26-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RGE_RS17205 40fef229e970b393959f592de5d1e9cb 466 Gene3D G3DSA:3.40.50.10750 279 434 7.2E-47 T 26-04-2016 RGE_RS17205 40fef229e970b393959f592de5d1e9cb 466 PANTHER PTHR13078 15 144 7.7E-24 T 26-04-2016 RGE_RS17205 40fef229e970b393959f592de5d1e9cb 466 Pfam PF01575 MaoC like domain 27 117 3.7E-17 T 26-04-2016 IPR002539 MaoC-like domain RGE_RS17205 40fef229e970b393959f592de5d1e9cb 466 Gene3D G3DSA:3.10.129.10 14 144 1.5E-38 T 26-04-2016 IPR029069 HotDog domain RGE_RS17205 40fef229e970b393959f592de5d1e9cb 466 PRINTS PR01483 Fatty acid synthase signature 157 180 5.4E-8 T 26-04-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 RGE_RS17205 40fef229e970b393959f592de5d1e9cb 466 PRINTS PR01483 Fatty acid synthase signature 32 54 5.4E-8 T 26-04-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 RGE_RS17205 40fef229e970b393959f592de5d1e9cb 466 PRINTS PR01483 Fatty acid synthase signature 54 75 5.4E-8 T 26-04-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 RGE_RS17205 40fef229e970b393959f592de5d1e9cb 466 SUPERFAMILY SSF53659 172 461 2.67E-62 T 26-04-2016 RGE_RS17205 40fef229e970b393959f592de5d1e9cb 466 SUPERFAMILY SSF54637 12 149 8.54E-33 T 26-04-2016 IPR029069 HotDog domain RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 SUPERFAMILY SSF46894 138 211 2.58E-18 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 PANTHER PTHR26402 4 219 2.8E-73 T 26-04-2016 RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 Pfam PF00072 Response regulator receiver domain 6 117 3.8E-29 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 Gene3D G3DSA:1.10.10.10 152 209 8.5E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 Gene3D G3DSA:3.40.50.2300 1 151 1.1E-37 T 26-04-2016 RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 203 4.0E-15 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 PANTHER PTHR26402:SF210 4 219 2.8E-73 T 26-04-2016 RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 SMART SM00448 4 117 2.1E-31 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 SUPERFAMILY SSF52172 3 129 1.99E-33 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 SMART SM00421 147 204 4.6E-18 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.3E-8 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.3E-8 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11380 e0f1f5c27a60e186e17c1f1583cdce6c 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.3E-8 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS18145 ef830ed598c5d018003ea94b5c30dbd9 73 Gene3D G3DSA:3.10.290.10 1 69 1.8E-28 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS18145 ef830ed598c5d018003ea94b5c30dbd9 73 PANTHER PTHR32319 7 70 1.7E-23 T 26-04-2016 RGE_RS18145 ef830ed598c5d018003ea94b5c30dbd9 73 SUPERFAMILY SSF55174 2 69 3.93E-21 T 26-04-2016 RGE_RS18145 ef830ed598c5d018003ea94b5c30dbd9 73 Pfam PF13275 S4 domain 7 69 7.2E-26 T 26-04-2016 RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 SUPERFAMILY SSF51735 4 237 3.33E-67 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 1.1E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 1.1E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 1.1E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 Gene3D G3DSA:3.40.50.720 5 237 5.1E-71 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 1.1E-27 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.1E-27 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 1.1E-27 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 1.1E-27 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 1.1E-27 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 PANTHER PTHR24322 149 182 3.0E-58 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 PANTHER PTHR24322 8 133 3.0E-58 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 171 0.0025 T 26-04-2016 RGE_RS18780 4fb8ea36b1244623e9ec1641a14ff0f5 279 Pfam PF00106 short chain dehydrogenase 7 190 4.7E-54 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS03690 754efdca103360e564c58954fb83d713 234 Gene3D G3DSA:3.40.50.1820 4 233 2.8E-41 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS03690 754efdca103360e564c58954fb83d713 234 PANTHER PTHR10992 2 234 3.1E-32 T 26-04-2016 RGE_RS03690 754efdca103360e564c58954fb83d713 234 PRINTS PR00111 Alpha/beta hydrolase fold signature 178 192 4.8E-10 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS03690 754efdca103360e564c58954fb83d713 234 PRINTS PR00111 Alpha/beta hydrolase fold signature 58 71 4.8E-10 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS03690 754efdca103360e564c58954fb83d713 234 PRINTS PR00111 Alpha/beta hydrolase fold signature 72 85 4.8E-10 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS03690 754efdca103360e564c58954fb83d713 234 SUPERFAMILY SSF53474 5 233 6.16E-45 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS03690 754efdca103360e564c58954fb83d713 234 Pfam PF12697 Alpha/beta hydrolase family 33 227 1.8E-12 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS18020 64a63421d63b8df58df80a7a2f052cd2 410 Pfam PF11871 Domain of unknown function (DUF3391) 2 130 1.4E-34 T 26-04-2016 IPR021812 Protein of unknown function DUF3391 RGE_RS18020 64a63421d63b8df58df80a7a2f052cd2 410 SUPERFAMILY SSF109604 155 320 1.51E-33 T 26-04-2016 RGE_RS18020 64a63421d63b8df58df80a7a2f052cd2 410 Pfam PF01966 HD domain 163 284 1.0E-13 T 26-04-2016 IPR006674 HD domain RGE_RS18020 64a63421d63b8df58df80a7a2f052cd2 410 SMART SM00471 158 294 2.0E-10 T 26-04-2016 IPR003607 HD/PDEase domain RGE_RS18020 64a63421d63b8df58df80a7a2f052cd2 410 Gene3D G3DSA:1.10.3210.10 153 321 9.2E-26 T 26-04-2016 IPR006674 HD domain RGE_RS18020 64a63421d63b8df58df80a7a2f052cd2 410 TIGRFAM TIGR00277 HDIG: HDIG domain 162 252 2.0E-7 T 26-04-2016 IPR006675 HDIG domain RGE_RS14110 68b051efd9df5ef8cdd1eac33a860e2b 104 Gene3D G3DSA:2.60.40.10 5 103 1.2E-32 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS14110 68b051efd9df5ef8cdd1eac33a860e2b 104 Pfam PF08770 Sulphur oxidation protein SoxZ 8 101 3.2E-31 T 26-04-2016 IPR014880 Sulphur oxidation protein SoxZ RGE_RS14110 68b051efd9df5ef8cdd1eac33a860e2b 104 TIGRFAM TIGR04490 SoxZ_true: thiosulfate oxidation carrier complex protein SoxZ 8 102 4.0E-33 T 26-04-2016 IPR030995 Thiosulfate oxidation carrier complex protein SoxZ RGE_RS14110 68b051efd9df5ef8cdd1eac33a860e2b 104 SUPERFAMILY SSF81296 6 103 1.68E-27 T 26-04-2016 IPR014756 Immunoglobulin E-set RGE_RS10745 cdb84b2b20bbc59fc33bfe048fb06ebb 101 Gene3D G3DSA:1.10.760.10 21 100 2.7E-18 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10745 cdb84b2b20bbc59fc33bfe048fb06ebb 101 Pfam PF00034 Cytochrome c 22 100 2.9E-5 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10745 cdb84b2b20bbc59fc33bfe048fb06ebb 101 SUPERFAMILY SSF46626 21 100 2.58E-9 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10745 cdb84b2b20bbc59fc33bfe048fb06ebb 101 PRINTS PR00606 Class ID cytochrome C signature 23 36 7.2E-6 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS10745 cdb84b2b20bbc59fc33bfe048fb06ebb 101 PRINTS PR00606 Class ID cytochrome C signature 90 100 7.2E-6 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS10745 cdb84b2b20bbc59fc33bfe048fb06ebb 101 PRINTS PR00606 Class ID cytochrome C signature 38 51 7.2E-6 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS04455 8226761d3563b927877e02f4bfe9e753 219 Gene3D G3DSA:1.10.10.10 66 167 3.8E-27 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04455 8226761d3563b927877e02f4bfe9e753 219 SUPERFAMILY SSF46785 75 167 1.19E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04455 8226761d3563b927877e02f4bfe9e753 219 PANTHER PTHR33169:SF2 62 218 6.7E-23 T 26-04-2016 RGE_RS04455 8226761d3563b927877e02f4bfe9e753 219 PANTHER PTHR33169 62 218 6.7E-23 T 26-04-2016 RGE_RS04455 8226761d3563b927877e02f4bfe9e753 219 Pfam PF03551 Transcriptional regulator PadR-like family 81 149 2.2E-17 T 26-04-2016 IPR005149 Transcription regulator PadR, N-terminal RGE_RS03720 3bad09841f916bbdf2629d532d7d7168 142 PANTHER PTHR11545 1 142 2.8E-72 T 26-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RGE_RS03720 3bad09841f916bbdf2629d532d7d7168 142 SUPERFAMILY SSF52161 1 139 1.05E-58 T 26-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 RGE_RS03720 3bad09841f916bbdf2629d532d7d7168 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 27.22 T 26-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RGE_RS03720 3bad09841f916bbdf2629d532d7d7168 142 Pfam PF00572 Ribosomal protein L13 14 138 6.6E-55 T 26-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RGE_RS03720 3bad09841f916bbdf2629d532d7d7168 142 Gene3D G3DSA:3.90.1180.10 3 140 3.0E-62 T 26-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 RGE_RS03720 3bad09841f916bbdf2629d532d7d7168 142 PIRSF PIRSF002181 1 142 6.1E-48 T 26-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RGE_RS03720 3bad09841f916bbdf2629d532d7d7168 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 5 140 7.8E-62 T 26-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 RGE_RS08415 fbfd5bde33d10005f8b3c8b205d13bf4 692 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 143 166 - T 26-04-2016 IPR025505 FHIPEP conserved site RGE_RS08415 fbfd5bde33d10005f8b3c8b205d13bf4 692 PANTHER PTHR30161 1 691 0.0 T 26-04-2016 RGE_RS08415 fbfd5bde33d10005f8b3c8b205d13bf4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 138 154 1.7E-54 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS08415 fbfd5bde33d10005f8b3c8b205d13bf4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 157 175 1.7E-54 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS08415 fbfd5bde33d10005f8b3c8b205d13bf4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 238 252 1.7E-54 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS08415 fbfd5bde33d10005f8b3c8b205d13bf4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 71 90 1.7E-54 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS08415 fbfd5bde33d10005f8b3c8b205d13bf4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 34 47 1.7E-54 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS08415 fbfd5bde33d10005f8b3c8b205d13bf4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 187 204 1.7E-54 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS08415 fbfd5bde33d10005f8b3c8b205d13bf4 692 Pfam PF00771 FHIPEP family 27 679 2.2E-256 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS08415 fbfd5bde33d10005f8b3c8b205d13bf4 692 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 16 685 1.2E-254 T 26-04-2016 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 RGE_RS08415 fbfd5bde33d10005f8b3c8b205d13bf4 692 PANTHER PTHR30161:SF1 1 691 0.0 T 26-04-2016 RGE_RS08415 fbfd5bde33d10005f8b3c8b205d13bf4 692 PIRSF PIRSF005419 2 691 1.9E-239 T 26-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RGE_RS05980 8adeee252963504df61dfc5710ef0b36 337 Gene3D G3DSA:3.20.20.60 32 268 2.0E-43 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS05980 8adeee252963504df61dfc5710ef0b36 337 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 53 257 2.9E-9 T 26-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RGE_RS05980 8adeee252963504df61dfc5710ef0b36 337 SUPERFAMILY SSF51621 47 267 1.41E-38 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS05980 8adeee252963504df61dfc5710ef0b36 337 PANTHER PTHR11105 1 314 4.0E-32 T 26-04-2016 RGE_RS05980 8adeee252963504df61dfc5710ef0b36 337 PANTHER PTHR11105:SF0 1 314 4.0E-32 T 26-04-2016 RGE_RS12750 0b78b4b255d4e336962d11c456941617 435 SUPERFAMILY SSF53383 3 434 1.36E-127 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS12750 0b78b4b255d4e336962d11c456941617 435 Pfam PF00202 Aminotransferase class-III 19 431 1.9E-121 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS12750 0b78b4b255d4e336962d11c456941617 435 Gene3D G3DSA:3.90.1150.10 3 57 7.5E-44 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS12750 0b78b4b255d4e336962d11c456941617 435 Gene3D G3DSA:3.90.1150.10 337 434 7.5E-44 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS12750 0b78b4b255d4e336962d11c456941617 435 PANTHER PTHR11986 1 434 6.0E-259 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS12750 0b78b4b255d4e336962d11c456941617 435 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 245 282 - T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS12750 0b78b4b255d4e336962d11c456941617 435 PANTHER PTHR11986:SF80 1 434 6.0E-259 T 26-04-2016 RGE_RS12750 0b78b4b255d4e336962d11c456941617 435 Gene3D G3DSA:3.40.640.10 58 335 3.6E-89 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS21355 d96ff169eac351eb7211d259b3058e05 599 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 423 587 2.0E-43 T 26-04-2016 IPR000160 GGDEF domain RGE_RS21355 d96ff169eac351eb7211d259b3058e05 599 SUPERFAMILY SSF48452 133 266 1.82E-9 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS21355 d96ff169eac351eb7211d259b3058e05 599 SUPERFAMILY SSF55073 432 587 3.53E-41 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS21355 d96ff169eac351eb7211d259b3058e05 599 SMART SM00267 416 589 1.1E-49 T 26-04-2016 IPR000160 GGDEF domain RGE_RS21355 d96ff169eac351eb7211d259b3058e05 599 PANTHER PTHR10799 460 587 1.8E-19 T 26-04-2016 RGE_RS21355 d96ff169eac351eb7211d259b3058e05 599 PANTHER PTHR10799 358 363 1.8E-19 T 26-04-2016 RGE_RS21355 d96ff169eac351eb7211d259b3058e05 599 Gene3D G3DSA:1.25.40.10 97 407 1.0E-7 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS21355 d96ff169eac351eb7211d259b3058e05 599 Pfam PF00990 Diguanylate cyclase, GGDEF domain 427 585 6.8E-39 T 26-04-2016 IPR000160 GGDEF domain RGE_RS21355 d96ff169eac351eb7211d259b3058e05 599 Gene3D G3DSA:3.30.70.270 429 587 7.7E-47 T 26-04-2016 RGE_RS12310 601dd684cb265ab5648ac6a26a371785 147 PANTHER PTHR30574 5 139 1.2E-19 T 26-04-2016 RGE_RS12310 601dd684cb265ab5648ac6a26a371785 147 PANTHER PTHR30574:SF1 5 139 1.2E-19 T 26-04-2016 RGE_RS11480 69292894b613cca9f8e0aeaca3fc9e76 256 PANTHER PTHR10788 26 253 3.7E-15 T 26-04-2016 RGE_RS11480 69292894b613cca9f8e0aeaca3fc9e76 256 Gene3D G3DSA:3.40.50.1000 26 98 1.6E-31 T 26-04-2016 IPR023214 HAD-like domain RGE_RS11480 69292894b613cca9f8e0aeaca3fc9e76 256 Gene3D G3DSA:3.40.50.1000 171 251 1.6E-31 T 26-04-2016 IPR023214 HAD-like domain RGE_RS11480 69292894b613cca9f8e0aeaca3fc9e76 256 Pfam PF02358 Trehalose-phosphatase 29 213 2.6E-22 T 26-04-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 RGE_RS11480 69292894b613cca9f8e0aeaca3fc9e76 256 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 25 249 5.9E-29 T 26-04-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 RGE_RS11480 69292894b613cca9f8e0aeaca3fc9e76 256 SUPERFAMILY SSF56784 26 249 6.01E-29 T 26-04-2016 IPR023214 HAD-like domain RGE_RS04190 a61964da4d73abb23365730c9d8d414f 201 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 116 129 - T 26-04-2016 IPR033135 ClpP, histidine active site RGE_RS04190 a61964da4d73abb23365730c9d8d414f 201 Gene3D G3DSA:3.90.226.10 29 198 1.1E-59 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS04190 a61964da4d73abb23365730c9d8d414f 201 PANTHER PTHR10381 31 199 6.3E-59 T 26-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RGE_RS04190 a61964da4d73abb23365730c9d8d414f 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 197 31.162 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS04190 a61964da4d73abb23365730c9d8d414f 201 SUPERFAMILY SSF52096 29 197 2.02E-54 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS04190 a61964da4d73abb23365730c9d8d414f 201 PRINTS PR00127 Clp protease catalytic subunit P signature 43 58 1.1E-27 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS04190 a61964da4d73abb23365730c9d8d414f 201 PRINTS PR00127 Clp protease catalytic subunit P signature 115 134 1.1E-27 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS04190 a61964da4d73abb23365730c9d8d414f 201 PRINTS PR00127 Clp protease catalytic subunit P signature 172 191 1.1E-27 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS04190 a61964da4d73abb23365730c9d8d414f 201 PRINTS PR00127 Clp protease catalytic subunit P signature 94 111 1.1E-27 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS04190 a61964da4d73abb23365730c9d8d414f 201 PRINTS PR00127 Clp protease catalytic subunit P signature 63 83 1.1E-27 T 26-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RGE_RS04190 a61964da4d73abb23365730c9d8d414f 201 Pfam PF00574 Clp protease 30 196 2.3E-61 T 26-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RGE_RS04190 a61964da4d73abb23365730c9d8d414f 201 PANTHER PTHR10381:SF22 31 199 6.3E-59 T 26-04-2016 RGE_RS12095 ca3fc26e441e04aa9de5cb4ce4b103b6 341 Gene3D G3DSA:3.90.550.10 16 244 3.8E-44 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS12095 ca3fc26e441e04aa9de5cb4ce4b103b6 341 PANTHER PTHR22916 9 330 7.6E-40 T 26-04-2016 RGE_RS12095 ca3fc26e441e04aa9de5cb4ce4b103b6 341 SUPERFAMILY SSF53448 13 259 2.25E-51 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS12095 ca3fc26e441e04aa9de5cb4ce4b103b6 341 Pfam PF00535 Glycosyl transferase family 2 19 178 1.6E-28 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS10675 d2510bf2de43baf6bb357b7c7059b6b4 272 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 36 221 5.0E-41 T 26-04-2016 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN RGE_RS10675 d2510bf2de43baf6bb357b7c7059b6b4 272 SUPERFAMILY SSF159501 35 250 1.67E-52 T 26-04-2016 RGE_RS21535 f6a65f3e6af22e887fcbd79ed14cc397 205 PANTHER PTHR12277:SF79 1 200 1.9E-32 T 26-04-2016 RGE_RS21535 f6a65f3e6af22e887fcbd79ed14cc397 205 Gene3D G3DSA:3.40.50.1820 10 203 7.6E-43 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS21535 f6a65f3e6af22e887fcbd79ed14cc397 205 PANTHER PTHR12277 1 200 1.9E-32 T 26-04-2016 RGE_RS21535 f6a65f3e6af22e887fcbd79ed14cc397 205 Pfam PF12146 Serine aminopeptidase, S33 40 140 1.1E-9 T 26-04-2016 IPR022742 Serine aminopeptidase, S33 RGE_RS21535 f6a65f3e6af22e887fcbd79ed14cc397 205 SUPERFAMILY SSF53474 3 200 2.34E-38 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS04325 c14944b683d7034e849ad43056628bd6 291 PANTHER PTHR20275 4 286 3.7E-92 T 26-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RGE_RS04325 c14944b683d7034e849ad43056628bd6 291 Hamap MF_00361 NAD kinase [nadK]. 6 286 31.029 T 26-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RGE_RS04325 c14944b683d7034e849ad43056628bd6 291 SUPERFAMILY SSF111331 8 287 1.44E-84 T 26-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain RGE_RS04325 c14944b683d7034e849ad43056628bd6 291 Pfam PF01513 ATP-NAD kinase 56 269 7.7E-57 T 26-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RGE_RS04325 c14944b683d7034e849ad43056628bd6 291 Gene3D G3DSA:3.40.50.10330 3 149 7.4E-39 T 26-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RGE_RS04325 c14944b683d7034e849ad43056628bd6 291 Gene3D G3DSA:2.60.200.30 150 260 3.1E-41 T 26-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RGE_RS10130 e3166c04985e412b9079d40efe3b54a4 168 PANTHER PTHR11717:SF18 3 163 2.6E-32 T 26-04-2016 RGE_RS10130 e3166c04985e412b9079d40efe3b54a4 168 Gene3D G3DSA:3.40.50.270 2 145 2.9E-34 T 26-04-2016 RGE_RS10130 e3166c04985e412b9079d40efe3b54a4 168 PANTHER PTHR11717 3 163 2.6E-32 T 26-04-2016 RGE_RS10130 e3166c04985e412b9079d40efe3b54a4 168 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 145 2.3E-18 T 26-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RGE_RS10130 e3166c04985e412b9079d40efe3b54a4 168 SUPERFAMILY SSF52788 3 145 4.06E-32 T 26-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RGE_RS10130 e3166c04985e412b9079d40efe3b54a4 168 SMART SM00226 3 147 8.0E-33 T 26-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RGE_RS17485 74fc7dbc49a073a2875be0fdafed96a5 151 ProDom PD008308 HUPJ HYDROGENASE EXPRESSION/FORMATION HYDROGENASE-2 HYBE COMPONENT OPERON ELECTRON METAL-BINDING IRON 7 125 4.0E-21 T 26-04-2016 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE RGE_RS17485 74fc7dbc49a073a2875be0fdafed96a5 151 TIGRFAM TIGR03993 hydrog_HybE: [NiFe] hydrogenase assembly chaperone, HybE family 6 146 9.8E-40 T 26-04-2016 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE RGE_RS17485 74fc7dbc49a073a2875be0fdafed96a5 151 Pfam PF11939 Protein of unknown function (DUF3457) 3 148 2.2E-46 T 26-04-2016 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE RGE_RS10755 f4c49a139308ec6eadc6ac71898835e8 222 PANTHER PTHR30070 2 222 2.0E-53 T 26-04-2016 RGE_RS10755 f4c49a139308ec6eadc6ac71898835e8 222 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 10 218 2.7E-70 T 26-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria RGE_RS10755 f4c49a139308ec6eadc6ac71898835e8 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 29 50 5.7E-60 T 26-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10755 f4c49a139308ec6eadc6ac71898835e8 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 195 218 5.7E-60 T 26-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10755 f4c49a139308ec6eadc6ac71898835e8 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 55 72 5.7E-60 T 26-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10755 f4c49a139308ec6eadc6ac71898835e8 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 134 157 5.7E-60 T 26-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10755 f4c49a139308ec6eadc6ac71898835e8 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 78 101 5.7E-60 T 26-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10755 f4c49a139308ec6eadc6ac71898835e8 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 103 121 5.7E-60 T 26-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10755 f4c49a139308ec6eadc6ac71898835e8 222 PANTHER PTHR30070:SF1 2 222 2.0E-53 T 26-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10755 f4c49a139308ec6eadc6ac71898835e8 222 Pfam PF03379 CcmB protein 8 219 7.5E-71 T 26-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10755 f4c49a139308ec6eadc6ac71898835e8 222 PIRSF PIRSF002764 1 222 6.1E-73 T 26-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria RGE_RS19460 a35eb0b012a0938bde75e07fb561fea2 235 Gene3D G3DSA:1.20.120.530 83 221 1.6E-32 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS19460 a35eb0b012a0938bde75e07fb561fea2 235 SUPERFAMILY SSF46785 17 84 2.99E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19460 a35eb0b012a0938bde75e07fb561fea2 235 SUPERFAMILY SSF48008 85 220 2.88E-28 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS19460 a35eb0b012a0938bde75e07fb561fea2 235 PANTHER PTHR11751 17 107 1.6E-22 T 26-04-2016 RGE_RS19460 a35eb0b012a0938bde75e07fb561fea2 235 SMART SM00895 90 213 1.4E-19 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS19460 a35eb0b012a0938bde75e07fb561fea2 235 SMART SM00345 22 80 6.7E-15 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS19460 a35eb0b012a0938bde75e07fb561fea2 235 Gene3D G3DSA:1.10.10.10 9 81 8.4E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19460 a35eb0b012a0938bde75e07fb561fea2 235 Pfam PF07729 FCD domain 90 211 2.4E-25 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS19460 a35eb0b012a0938bde75e07fb561fea2 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 80 1.3E-19 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS19030 15398735846f44e8db1bd003c1ac7879 161 PANTHER PTHR30093 15 81 4.5E-18 T 26-04-2016 RGE_RS19030 15398735846f44e8db1bd003c1ac7879 161 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 38 130 3.2E-17 T 26-04-2016 IPR031982 Type IV minor pilin ComP RGE_RS19030 15398735846f44e8db1bd003c1ac7879 161 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 15 35 - T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS19030 15398735846f44e8db1bd003c1ac7879 161 Gene3D G3DSA:3.30.700.10 17 116 1.3E-15 T 26-04-2016 RGE_RS19030 15398735846f44e8db1bd003c1ac7879 161 Pfam PF07963 Prokaryotic N-terminal methylation motif 15 33 1.5E-5 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS19030 15398735846f44e8db1bd003c1ac7879 161 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 15 37 4.7E-7 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS19030 15398735846f44e8db1bd003c1ac7879 161 SUPERFAMILY SSF54523 17 119 2.93E-20 T 26-04-2016 RGE_RS19030 15398735846f44e8db1bd003c1ac7879 161 PRINTS PR00813 Bacterial general secretion pathway protein G signature 52 70 1.6E-10 T 26-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RGE_RS19030 15398735846f44e8db1bd003c1ac7879 161 PRINTS PR00813 Bacterial general secretion pathway protein G signature 16 41 1.6E-10 T 26-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 TIGRFAM TIGR02915 PEP_resp_reg: PEP-CTERM-box response regulator transcription factor 11 457 6.7E-212 T 26-04-2016 IPR014264 Signal transduction response regulator, PEP-CTERM system, putative RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 SMART SM00382 171 313 1.8E-12 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 PANTHER PTHR32071 10 456 1.2E-164 T 26-04-2016 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 Gene3D G3DSA:3.40.50.300 148 321 3.2E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 175 188 - T 26-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 SUPERFAMILY SSF52172 10 195 2.13E-32 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 Pfam PF02954 Bacterial regulatory protein, Fis family 414 448 3.3E-9 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 SMART SM00448 9 123 1.6E-18 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 SUPERFAMILY SSF52540 152 391 7.27E-70 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 236 251 - T 26-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 Gene3D G3DSA:1.10.10.60 402 456 4.2E-11 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 Gene3D G3DSA:1.10.8.60 322 397 6.7E-22 T 26-04-2016 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 SUPERFAMILY SSF46689 363 455 2.93E-11 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 Pfam PF00072 Response regulator receiver domain 11 119 1.5E-18 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 363 372 - T 26-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 Pfam PF00158 Sigma-54 interaction domain 152 316 1.7E-67 T 26-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 Gene3D G3DSA:3.40.50.2300 10 138 5.8E-26 T 26-04-2016 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 420 437 8.3E-5 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS01985 0893520d1c77986cf746c3eeeb92a7e0 457 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 437 457 8.3E-5 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS16530 338074e3d557de7a5b9f33bb8b5b6ee7 325 PANTHER PTHR11911 6 150 1.2E-120 T 26-04-2016 RGE_RS16530 338074e3d557de7a5b9f33bb8b5b6ee7 325 PANTHER PTHR11911 168 313 1.2E-120 T 26-04-2016 RGE_RS16530 338074e3d557de7a5b9f33bb8b5b6ee7 325 Hamap MF_01511 GMP reductase [guaC]. 1 323 62.525 T 26-04-2016 IPR005994 Guanosine monophosphate reductase, type2 GO:0003920|GO:0006163|GO:1902560 KEGG: 00230+1.7.1.7 RGE_RS16530 338074e3d557de7a5b9f33bb8b5b6ee7 325 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 163 175 - T 26-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 RGE_RS16530 338074e3d557de7a5b9f33bb8b5b6ee7 325 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 5 309 6.8E-65 T 26-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 RGE_RS16530 338074e3d557de7a5b9f33bb8b5b6ee7 325 PANTHER PTHR11911:SF97 6 150 1.2E-120 T 26-04-2016 RGE_RS16530 338074e3d557de7a5b9f33bb8b5b6ee7 325 PANTHER PTHR11911:SF97 168 313 1.2E-120 T 26-04-2016 RGE_RS16530 338074e3d557de7a5b9f33bb8b5b6ee7 325 TIGRFAM TIGR01306 GMP_reduct_2: guanosine monophosphate reductase 3 314 5.1E-156 T 26-04-2016 IPR005994 Guanosine monophosphate reductase, type2 GO:0003920|GO:0006163|GO:1902560 KEGG: 00230+1.7.1.7 RGE_RS16530 338074e3d557de7a5b9f33bb8b5b6ee7 325 SUPERFAMILY SSF51412 3 311 5.36E-87 T 26-04-2016 RGE_RS16530 338074e3d557de7a5b9f33bb8b5b6ee7 325 Gene3D G3DSA:3.20.20.70 3 313 1.0E-79 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS16530 338074e3d557de7a5b9f33bb8b5b6ee7 325 SMART SM01240 2 322 2.9E-99 T 26-04-2016 RGE_RS16530 338074e3d557de7a5b9f33bb8b5b6ee7 325 PIRSF PIRSF036500 1 319 1.0E-162 T 26-04-2016 IPR005994 Guanosine monophosphate reductase, type2 GO:0003920|GO:0006163|GO:1902560 KEGG: 00230+1.7.1.7 RGE_RS06515 c7a210f63c63ff3aa6d21d85e9d5df10 175 Gene3D G3DSA:3.40.430.10 4 172 3.9E-32 T 26-04-2016 IPR024072 Dihydrofolate reductase-like domain RGE_RS06515 c7a210f63c63ff3aa6d21d85e9d5df10 175 PANTHER PTHR38011:SF1 65 145 2.3E-16 T 26-04-2016 RGE_RS06515 c7a210f63c63ff3aa6d21d85e9d5df10 175 PANTHER PTHR38011 65 145 2.3E-16 T 26-04-2016 RGE_RS06515 c7a210f63c63ff3aa6d21d85e9d5df10 175 Pfam PF01872 RibD C-terminal domain 68 164 1.6E-13 T 26-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RGE_RS06515 c7a210f63c63ff3aa6d21d85e9d5df10 175 SUPERFAMILY SSF53597 4 172 3.01E-36 T 26-04-2016 IPR024072 Dihydrofolate reductase-like domain RGE_RS11225 d73729b7b16b744bbe9b1210bdd73135 670 Pfam PF13087 AAA domain 386 574 2.9E-16 T 26-04-2016 RGE_RS11225 d73729b7b16b744bbe9b1210bdd73135 670 Gene3D G3DSA:3.40.50.300 159 246 4.6E-30 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11225 d73729b7b16b744bbe9b1210bdd73135 670 Gene3D G3DSA:3.40.50.300 309 431 4.6E-30 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11225 d73729b7b16b744bbe9b1210bdd73135 670 SMART SM00382 169 389 5.9E-4 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11225 d73729b7b16b744bbe9b1210bdd73135 670 SUPERFAMILY SSF52540 157 581 2.66E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11225 d73729b7b16b744bbe9b1210bdd73135 670 PANTHER PTHR10887:SF340 173 575 5.8E-50 T 26-04-2016 RGE_RS11225 d73729b7b16b744bbe9b1210bdd73135 670 Pfam PF13245 Part of AAA domain 170 214 2.4E-7 T 26-04-2016 RGE_RS11225 d73729b7b16b744bbe9b1210bdd73135 670 PANTHER PTHR10887 173 575 5.8E-50 T 26-04-2016 RGE_RS11225 d73729b7b16b744bbe9b1210bdd73135 670 Gene3D G3DSA:3.40.50.300 457 587 7.3E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05240 ef518f50c59ea1afcc76e5dd8d4c37f8 252 Gene3D G3DSA:3.10.560.10 168 248 3.7E-12 T 26-04-2016 RGE_RS05240 ef518f50c59ea1afcc76e5dd8d4c37f8 252 TIGRFAM TIGR03028 EpsE: polysaccharide export protein EpsE 13 252 2.0E-106 T 26-04-2016 IPR017478 Polysaccharide export EpsE RGE_RS05240 ef518f50c59ea1afcc76e5dd8d4c37f8 252 Pfam PF02563 Polysaccharide biosynthesis/export protein 10 85 6.5E-20 T 26-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 RGE_RS05240 ef518f50c59ea1afcc76e5dd8d4c37f8 252 Gene3D G3DSA:3.30.1950.10 19 84 8.9E-18 T 26-04-2016 RGE_RS05240 ef518f50c59ea1afcc76e5dd8d4c37f8 252 Gene3D G3DSA:3.10.560.10 85 167 8.5E-17 T 26-04-2016 RGE_RS05240 ef518f50c59ea1afcc76e5dd8d4c37f8 252 PANTHER PTHR33619 6 252 5.1E-44 T 26-04-2016 RGE_RS05240 ef518f50c59ea1afcc76e5dd8d4c37f8 252 Pfam PF10531 SLBB domain 178 231 4.5E-10 T 26-04-2016 IPR019554 Soluble ligand binding domain RGE_RS05240 ef518f50c59ea1afcc76e5dd8d4c37f8 252 Pfam PF10531 SLBB domain 92 134 1.5E-6 T 26-04-2016 IPR019554 Soluble ligand binding domain RGE_RS13350 640fbbaa3f844e66790628ef0e154574 446 SUPERFAMILY SSF52540 12 444 2.44E-168 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13350 640fbbaa3f844e66790628ef0e154574 446 Gene3D G3DSA:3.90.170.10 278 440 5.9E-64 T 26-04-2016 RGE_RS13350 640fbbaa3f844e66790628ef0e154574 446 Pfam PF00709 Adenylosuccinate synthetase 13 438 3.9E-169 T 26-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RGE_RS13350 640fbbaa3f844e66790628ef0e154574 446 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 144 155 - T 26-04-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 RGE_RS13350 640fbbaa3f844e66790628ef0e154574 446 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 446 203.324 T 26-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RGE_RS13350 640fbbaa3f844e66790628ef0e154574 446 SMART SM00788 12 439 7.0E-281 T 26-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RGE_RS13350 640fbbaa3f844e66790628ef0e154574 446 PANTHER PTHR11846 5 443 3.7E-225 T 26-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RGE_RS13350 640fbbaa3f844e66790628ef0e154574 446 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 14 444 1.2E-162 T 26-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RGE_RS13350 640fbbaa3f844e66790628ef0e154574 446 Gene3D G3DSA:3.40.440.10 208 277 1.5E-66 T 26-04-2016 RGE_RS13350 640fbbaa3f844e66790628ef0e154574 446 Gene3D G3DSA:3.40.440.10 12 102 1.5E-66 T 26-04-2016 RGE_RS13350 640fbbaa3f844e66790628ef0e154574 446 Gene3D G3DSA:1.10.300.10 111 207 8.5E-33 T 26-04-2016 RGE_RS13350 640fbbaa3f844e66790628ef0e154574 446 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 19 26 - T 26-04-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RGE_RS03380 7f4cbfa2254e95b67536d91abb286cf8 205 SUPERFAMILY SSF117987 1 79 1.91E-16 T 26-04-2016 RGE_RS03380 7f4cbfa2254e95b67536d91abb286cf8 205 SUPERFAMILY SSF117987 95 204 2.25E-27 T 26-04-2016 RGE_RS03380 7f4cbfa2254e95b67536d91abb286cf8 205 TIGRFAM TIGR01907 casE_Cse3: CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI 19 204 3.6E-23 T 26-04-2016 IPR010179 CRISPR-associated protein Cse3 RGE_RS03380 7f4cbfa2254e95b67536d91abb286cf8 205 Pfam PF08798 CRISPR associated protein 1 204 9.3E-48 T 26-04-2016 IPR010179 CRISPR-associated protein Cse3 RGE_RS03380 7f4cbfa2254e95b67536d91abb286cf8 205 Gene3D G3DSA:3.30.70.1200 1 85 4.8E-22 T 26-04-2016 RGE_RS03380 7f4cbfa2254e95b67536d91abb286cf8 205 SMART SM01101 1 204 4.0E-59 T 26-04-2016 IPR010179 CRISPR-associated protein Cse3 RGE_RS03380 7f4cbfa2254e95b67536d91abb286cf8 205 Gene3D G3DSA:3.30.70.1210 95 203 9.1E-27 T 26-04-2016 RGE_RS02700 cd9862fa11420a12ba4143ccb58179fd 280 PANTHER PTHR38461 1 280 5.6E-142 T 26-04-2016 RGE_RS02700 cd9862fa11420a12ba4143ccb58179fd 280 Gene3D G3DSA:2.60.120.500 135 280 2.7E-74 T 26-04-2016 IPR027447 5-keto-4-deoxyuronate isomerase, C-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 RGE_RS02700 cd9862fa11420a12ba4143ccb58179fd 280 SUPERFAMILY SSF51182 1 264 1.39E-101 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS02700 cd9862fa11420a12ba4143ccb58179fd 280 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 280 52.061 T 26-04-2016 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 RGE_RS02700 cd9862fa11420a12ba4143ccb58179fd 280 PIRSF PIRSF006625 1 280 1.6E-124 T 26-04-2016 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 RGE_RS02700 cd9862fa11420a12ba4143ccb58179fd 280 Pfam PF04962 KduI/IolB family 58 275 2.9E-31 T 26-04-2016 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 RGE_RS02700 cd9862fa11420a12ba4143ccb58179fd 280 Gene3D G3DSA:2.60.120.520 21 134 2.1E-47 T 26-04-2016 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 RGE_RS23370 4c1a461f02c5342b2895652725611a91 487 Pfam PF05235 CHAD domain 227 441 1.3E-31 T 26-04-2016 IPR007899 CHAD domain RGE_RS23370 4c1a461f02c5342b2895652725611a91 487 SUPERFAMILY SSF55154 1 209 5.89E-36 T 26-04-2016 IPR033469 CYTH-like domain RGE_RS23370 4c1a461f02c5342b2895652725611a91 487 PANTHER PTHR39569 1 305 1.7E-31 T 26-04-2016 RGE_RS23370 4c1a461f02c5342b2895652725611a91 487 Gene3D G3DSA:2.40.320.10 1 207 3.7E-26 T 26-04-2016 IPR023577 CYTH domain RGE_RS23370 4c1a461f02c5342b2895652725611a91 487 SMART SM00880 226 474 8.4E-38 T 26-04-2016 IPR007899 CHAD domain RGE_RS23370 4c1a461f02c5342b2895652725611a91 487 Pfam PF01928 CYTH domain 1 193 6.2E-21 T 26-04-2016 IPR023577 CYTH domain RGE_RS23370 4c1a461f02c5342b2895652725611a91 487 SMART SM01118 1 200 7.7E-32 T 26-04-2016 IPR023577 CYTH domain RGE_RS23370 4c1a461f02c5342b2895652725611a91 487 PANTHER PTHR39569:SF1 1 305 1.7E-31 T 26-04-2016 RGE_RS20310 0af6a7b8daa84a61cc52682d1871d5f4 280 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 13 268 3.2E-91 T 26-04-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RGE_RS20310 0af6a7b8daa84a61cc52682d1871d5f4 280 PANTHER PTHR20858:SF17 2 280 4.2E-116 T 26-04-2016 RGE_RS20310 0af6a7b8daa84a61cc52682d1871d5f4 280 Pfam PF08543 Phosphomethylpyrimidine kinase 20 267 1.3E-91 T 26-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 RGE_RS20310 0af6a7b8daa84a61cc52682d1871d5f4 280 Gene3D G3DSA:3.40.1190.20 12 268 2.2E-102 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS20310 0af6a7b8daa84a61cc52682d1871d5f4 280 SUPERFAMILY SSF53613 10 268 2.03E-80 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS20310 0af6a7b8daa84a61cc52682d1871d5f4 280 PANTHER PTHR20858 2 280 4.2E-116 T 26-04-2016 RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 394 412 6.0E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 362 376 6.0E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 390 6.0E-9 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 325 432 3.3E-17 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 Pfam PF00512 His Kinase A (phospho-acceptor) domain 216 280 2.4E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 SMART SM00388 215 280 6.8E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 SMART SM00387 325 434 4.9E-31 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 SUPERFAMILY SSF55874 269 432 4.58E-38 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 Gene3D G3DSA:3.30.565.10 288 432 1.6E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 Pfam PF08521 Two-component sensor kinase N-terminal 16 135 3.1E-6 T 26-04-2016 IPR013727 Two-component sensor kinase, N-terminal RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 PANTHER PTHR24423 156 433 7.1E-67 T 26-04-2016 RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 SUPERFAMILY SSF47384 198 280 1.0E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 PANTHER PTHR24423:SF474 156 433 7.1E-67 T 26-04-2016 RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 Pfam PF00672 HAMP domain 152 209 4.7E-8 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS03620 d054505a4634c8f4befd38a1d735cf09 434 Gene3D G3DSA:1.10.287.130 208 276 3.3E-11 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS07235 c261f41d2bbdc7a15aadae798061d446 413 Gene3D G3DSA:3.20.20.190 71 404 4.1E-54 T 26-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RGE_RS07235 c261f41d2bbdc7a15aadae798061d446 413 PANTHER PTHR23344 65 351 1.9E-65 T 26-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RGE_RS07235 c261f41d2bbdc7a15aadae798061d446 413 PANTHER PTHR23344 370 413 1.9E-65 T 26-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RGE_RS07235 c261f41d2bbdc7a15aadae798061d446 413 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 73 356 3.7E-19 T 26-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RGE_RS07235 c261f41d2bbdc7a15aadae798061d446 413 SUPERFAMILY SSF51695 71 404 1.39E-59 T 26-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RGE_RS07235 c261f41d2bbdc7a15aadae798061d446 413 PANTHER PTHR23344:SF7 65 351 1.9E-65 T 26-04-2016 RGE_RS07235 c261f41d2bbdc7a15aadae798061d446 413 PANTHER PTHR23344:SF7 370 413 1.9E-65 T 26-04-2016 RGE_RS14645 af8a703b3f3849d06ffe70190d7ad10d 824 PANTHER PTHR32552 19 341 8.9E-28 T 26-04-2016 RGE_RS14645 af8a703b3f3849d06ffe70190d7ad10d 824 PANTHER PTHR32552:SF16 405 823 8.9E-28 T 26-04-2016 RGE_RS14645 af8a703b3f3849d06ffe70190d7ad10d 824 Gene3D G3DSA:2.170.130.10 56 158 1.7E-13 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14645 af8a703b3f3849d06ffe70190d7ad10d 824 Gene3D G3DSA:2.40.170.20 159 455 1.9E-69 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14645 af8a703b3f3849d06ffe70190d7ad10d 824 Gene3D G3DSA:2.40.170.20 494 821 1.9E-69 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14645 af8a703b3f3849d06ffe70190d7ad10d 824 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 155 1.6E-11 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14645 af8a703b3f3849d06ffe70190d7ad10d 824 SUPERFAMILY SSF56935 23 435 4.07E-92 T 26-04-2016 RGE_RS14645 af8a703b3f3849d06ffe70190d7ad10d 824 SUPERFAMILY SSF56935 464 821 4.07E-92 T 26-04-2016 RGE_RS14645 af8a703b3f3849d06ffe70190d7ad10d 824 PANTHER PTHR32552:SF16 19 341 8.9E-28 T 26-04-2016 RGE_RS14645 af8a703b3f3849d06ffe70190d7ad10d 824 PANTHER PTHR32552 405 823 8.9E-28 T 26-04-2016 RGE_RS14645 af8a703b3f3849d06ffe70190d7ad10d 824 Pfam PF00593 TonB dependent receptor 555 821 6.3E-28 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14645 af8a703b3f3849d06ffe70190d7ad10d 824 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 32 822 7.3E-174 T 26-04-2016 IPR010104 Bacterial TonB-dependent receptor RGE_RS05055 634591e6c7ee8a042c887c063c3d568b 218 PANTHER PTHR39323 3 211 3.2E-32 T 26-04-2016 RGE_RS05055 634591e6c7ee8a042c887c063c3d568b 218 SUPERFAMILY SSF56300 27 159 1.27E-12 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS05055 634591e6c7ee8a042c887c063c3d568b 218 Pfam PF00149 Calcineurin-like phosphoesterase 27 119 2.6E-4 T 26-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RGE_RS05055 634591e6c7ee8a042c887c063c3d568b 218 PANTHER PTHR39323:SF1 3 211 3.2E-32 T 26-04-2016 RGE_RS05055 634591e6c7ee8a042c887c063c3d568b 218 Gene3D G3DSA:3.60.21.10 27 142 2.2E-8 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS05055 634591e6c7ee8a042c887c063c3d568b 218 TIGRFAM TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated 4 210 3.5E-66 T 26-04-2016 IPR026336 Metallophosphoesterase, DNA ligase-associated RGE_RS05055 634591e6c7ee8a042c887c063c3d568b 218 PIRSF PIRSF000887 4 201 2.1E-42 T 26-04-2016 IPR024173 Phosphoesterase, MJ0037 RGE_RS00405 2a3962638c631f8551585623e8da8760 999 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 781 792 - T 26-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RGE_RS00405 2a3962638c631f8551585623e8da8760 999 Gene3D G3DSA:3.20.20.220 167 495 8.4E-96 T 26-04-2016 IPR029041 FAD-linked oxidoreductase-like RGE_RS00405 2a3962638c631f8551585623e8da8760 999 Gene3D G3DSA:3.40.309.10 769 959 1.3E-44 T 26-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RGE_RS00405 2a3962638c631f8551585623e8da8760 999 SUPERFAMILY SSF81935 12 166 2.75E-35 T 26-04-2016 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RGE_RS00405 2a3962638c631f8551585623e8da8760 999 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 58 164 1.5E-26 T 26-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RGE_RS00405 2a3962638c631f8551585623e8da8760 999 Gene3D G3DSA:1.10.2060.10 54 165 9.3E-27 T 26-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RGE_RS00405 2a3962638c631f8551585623e8da8760 999 Pfam PF00171 Aldehyde dehydrogenase family 534 977 2.6E-108 T 26-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RGE_RS00405 2a3962638c631f8551585623e8da8760 999 Gene3D G3DSA:3.40.605.10 534 768 2.1E-66 T 26-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RGE_RS00405 2a3962638c631f8551585623e8da8760 999 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 533 976 2.4E-176 T 26-04-2016 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RGE_RS00405 2a3962638c631f8551585623e8da8760 999 SUPERFAMILY SSF51730 167 509 3.1E-99 T 26-04-2016 IPR029041 FAD-linked oxidoreductase-like RGE_RS00405 2a3962638c631f8551585623e8da8760 999 PANTHER PTHR11699:SF18 538 983 3.5E-148 T 26-04-2016 RGE_RS00405 2a3962638c631f8551585623e8da8760 999 Pfam PF01619 Proline dehydrogenase 175 474 3.1E-90 T 26-04-2016 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|UniPathway: UPA00261 RGE_RS00405 2a3962638c631f8551585623e8da8760 999 SUPERFAMILY SSF53720 535 983 1.23E-119 T 26-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RGE_RS00405 2a3962638c631f8551585623e8da8760 999 PANTHER PTHR11699 538 983 3.5E-148 T 26-04-2016 RGE_RS10555 ad78d008d0a7e902e5e18446944269b3 356 SUPERFAMILY SSF52540 29 313 5.89E-48 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10555 ad78d008d0a7e902e5e18446944269b3 356 Gene3D G3DSA:3.40.50.300 43 205 6.5E-46 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10555 ad78d008d0a7e902e5e18446944269b3 356 PANTHER PTHR11603:SF153 32 342 3.5E-128 T 26-04-2016 RGE_RS10555 ad78d008d0a7e902e5e18446944269b3 356 PIRSF PIRSF002849 5 343 9.9E-132 T 26-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted RGE_RS10555 ad78d008d0a7e902e5e18446944269b3 356 Gene3D G3DSA:1.10.8.300 226 337 9.0E-37 T 26-04-2016 RGE_RS10555 ad78d008d0a7e902e5e18446944269b3 356 PANTHER PTHR11603 32 342 3.5E-128 T 26-04-2016 RGE_RS10555 ad78d008d0a7e902e5e18446944269b3 356 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 62 192 7.3E-65 T 26-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RGE_RS02255 31e35d5da7086f903bb7fc06c9c61608 313 SUPERFAMILY SSF50486 210 312 3.34E-30 T 26-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 RGE_RS02255 31e35d5da7086f903bb7fc06c9c61608 313 Gene3D G3DSA:3.40.50.170 2 210 9.4E-75 T 26-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS02255 31e35d5da7086f903bb7fc06c9c61608 313 SUPERFAMILY SSF53328 1 211 5.23E-62 T 26-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS02255 31e35d5da7086f903bb7fc06c9c61608 313 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 307 35.422 T 26-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS02255 31e35d5da7086f903bb7fc06c9c61608 313 Gene3D G3DSA:3.10.25.10 212 313 7.8E-33 T 26-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS02255 31e35d5da7086f903bb7fc06c9c61608 313 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 140 163 - T 26-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS02255 31e35d5da7086f903bb7fc06c9c61608 313 Pfam PF00551 Formyl transferase 6 188 2.8E-41 T 26-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS02255 31e35d5da7086f903bb7fc06c9c61608 313 PANTHER PTHR11138 1 304 1.3E-107 T 26-04-2016 RGE_RS02255 31e35d5da7086f903bb7fc06c9c61608 313 Pfam PF02911 Formyl transferase, C-terminal domain 209 304 2.9E-27 T 26-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS02255 31e35d5da7086f903bb7fc06c9c61608 313 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 2 303 1.2E-81 T 26-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RGE_RS02605 8062010121a8db1d7027453d35f4e196 472 Gene3D G3DSA:1.20.1250.20 41 218 2.9E-31 T 26-04-2016 RGE_RS02605 8062010121a8db1d7027453d35f4e196 472 SUPERFAMILY SSF103473 28 470 2.35E-85 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS02605 8062010121a8db1d7027453d35f4e196 472 Gene3D G3DSA:1.20.1250.20 277 468 1.2E-21 T 26-04-2016 RGE_RS02605 8062010121a8db1d7027453d35f4e196 472 PANTHER PTHR24064 26 471 8.8E-85 T 26-04-2016 RGE_RS02605 8062010121a8db1d7027453d35f4e196 472 Pfam PF00083 Sugar (and other) transporter 74 471 2.8E-53 T 26-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RGE_RS02605 8062010121a8db1d7027453d35f4e196 472 PANTHER PTHR24064:SF168 26 471 8.8E-85 T 26-04-2016 RGE_RS02605 8062010121a8db1d7027453d35f4e196 472 ProSitePatterns PS00217 Sugar transport proteins signature 2. 135 160 - T 26-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RGE_RS20935 3e82a1daf9e7f5328b894676952851a6 468 PANTHER PTHR33712 6 468 1.8E-213 T 26-04-2016 RGE_RS20935 3e82a1daf9e7f5328b894676952851a6 468 Gene3D G3DSA:3.40.50.1980 182 290 7.0E-46 T 26-04-2016 RGE_RS20935 3e82a1daf9e7f5328b894676952851a6 468 PANTHER PTHR33712:SF6 6 468 1.8E-213 T 26-04-2016 RGE_RS20935 3e82a1daf9e7f5328b894676952851a6 468 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 130 144 - T 26-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RGE_RS20935 3e82a1daf9e7f5328b894676952851a6 468 SUPERFAMILY SSF53807 20 460 4.25E-141 T 26-04-2016 RGE_RS20935 3e82a1daf9e7f5328b894676952851a6 468 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 46 445 4.2E-108 T 26-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RGE_RS20935 3e82a1daf9e7f5328b894676952851a6 468 Gene3D G3DSA:3.40.50.1980 324 461 2.4E-51 T 26-04-2016 RGE_RS20935 3e82a1daf9e7f5328b894676952851a6 468 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 64 71 - T 26-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RGE_RS20935 3e82a1daf9e7f5328b894676952851a6 468 Gene3D G3DSA:3.40.50.1980 46 181 1.8E-45 T 26-04-2016 RGE_RS20935 3e82a1daf9e7f5328b894676952851a6 468 TIGRFAM TIGR01283 nifE: nitrogenase MoFe cofactor biosynthesis protein NifE 7 459 1.7E-198 T 26-04-2016 IPR005973 Nitrogenase MoFe cofactor biosynthesis protein NifE GO:0006461|GO:0009399 UniPathway: UPA00782 RGE_RS04355 a1c3fb5b2234855a81665ecf67ebc5a5 128 Gene3D G3DSA:3.10.180.10 11 125 2.4E-21 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS04355 a1c3fb5b2234855a81665ecf67ebc5a5 128 SUPERFAMILY SSF54593 4 125 5.24E-22 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS15815 cf170f9674bf860f0c002395658244e2 165 PANTHER PTHR35011:SF3 1 149 2.1E-24 T 26-04-2016 RGE_RS15815 cf170f9674bf860f0c002395658244e2 165 PANTHER PTHR35011 1 149 2.1E-24 T 26-04-2016 RGE_RS15815 cf170f9674bf860f0c002395658244e2 165 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 21 150 7.7E-20 T 26-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RGE_RS00440 82b2c4eafe85fa65ad326190e5624638 167 Pfam PF00210 Ferritin-like domain 29 166 2.7E-28 T 26-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RGE_RS00440 82b2c4eafe85fa65ad326190e5624638 167 PIRSF PIRSF005900 5 167 5.5E-42 T 26-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RGE_RS00440 82b2c4eafe85fa65ad326190e5624638 167 ProSitePatterns PS00819 Dps protein family signature 2. 73 87 - T 26-04-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 RGE_RS00440 82b2c4eafe85fa65ad326190e5624638 167 PANTHER PTHR30295:SF6 5 167 6.8E-61 T 26-04-2016 RGE_RS00440 82b2c4eafe85fa65ad326190e5624638 167 PANTHER PTHR30295 5 167 6.8E-61 T 26-04-2016 RGE_RS00440 82b2c4eafe85fa65ad326190e5624638 167 SUPERFAMILY SSF47240 14 166 3.92E-48 T 26-04-2016 IPR009078 Ferritin-like superfamily RGE_RS00440 82b2c4eafe85fa65ad326190e5624638 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 143 161 2.8E-10 T 26-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RGE_RS00440 82b2c4eafe85fa65ad326190e5624638 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 71 87 2.8E-10 T 26-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RGE_RS00440 82b2c4eafe85fa65ad326190e5624638 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 47 63 2.8E-10 T 26-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RGE_RS00440 82b2c4eafe85fa65ad326190e5624638 167 Gene3D G3DSA:1.20.1260.10 4 166 1.6E-64 T 26-04-2016 IPR012347 Ferritin-related RGE_RS18465 46d1e82caa70c28b42056093788d41ca 563 SUPERFAMILY SSF52091 427 535 1.31E-10 T 26-04-2016 IPR002645 STAS domain RGE_RS18465 46d1e82caa70c28b42056093788d41ca 563 PANTHER PTHR11814 16 540 1.6E-104 T 26-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 RGE_RS18465 46d1e82caa70c28b42056093788d41ca 563 PANTHER PTHR11814:SF71 16 540 1.6E-104 T 26-04-2016 RGE_RS18465 46d1e82caa70c28b42056093788d41ca 563 Pfam PF00916 Sulfate permease family 25 160 2.7E-33 T 26-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RGE_RS18465 46d1e82caa70c28b42056093788d41ca 563 Pfam PF00916 Sulfate permease family 165 369 4.6E-30 T 26-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RGE_RS18465 46d1e82caa70c28b42056093788d41ca 563 Gene3D G3DSA:3.30.750.24 427 535 3.6E-8 T 26-04-2016 IPR002645 STAS domain RGE_RS18465 46d1e82caa70c28b42056093788d41ca 563 Pfam PF01740 STAS domain 429 531 3.3E-7 T 26-04-2016 IPR002645 STAS domain RGE_RS03315 424aed6402ed42624d36d11a8798e4a9 254 Gene3D G3DSA:3.40.50.1820 12 251 1.5E-40 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS03315 424aed6402ed42624d36d11a8798e4a9 254 PANTHER PTHR10992 12 251 1.8E-16 T 26-04-2016 RGE_RS03315 424aed6402ed42624d36d11a8798e4a9 254 SUPERFAMILY SSF53474 11 251 1.65E-35 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS03315 424aed6402ed42624d36d11a8798e4a9 254 Pfam PF12697 Alpha/beta hydrolase family 17 248 1.3E-14 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 10 204 6.1E-63 T 26-04-2016 IPR006328 Haloacid dehalogenase, type II GO:0008152|GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 159 3.04E-31 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 161 181 3.04E-31 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 35 48 3.04E-31 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 188 201 3.04E-31 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 3.04E-31 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 112 125 3.04E-31 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 49 62 3.04E-31 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 Gene3D G3DSA:3.40.50.1000 92 226 4.6E-34 T 26-04-2016 IPR023214 HAD-like domain RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 PANTHER PTHR12725 12 203 1.5E-23 T 26-04-2016 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 Gene3D G3DSA:1.10.150.240 23 91 4.7E-29 T 26-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 11 190 4.9E-25 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 PANTHER PTHR12725:SF58 12 203 1.5E-23 T 26-04-2016 RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 Pfam PF13419 Haloacid dehalogenase-like hydrolase 94 199 1.2E-10 T 26-04-2016 IPR023214 HAD-like domain RGE_RS22415 e8d7968928363450d5a5ac89b1c5056a 229 SUPERFAMILY SSF56784 8 227 2.5E-45 T 26-04-2016 IPR023214 HAD-like domain RGE_RS04595 85b60f929b9325deb7ea6e2a1cf44ec4 390 Pfam PF00990 Diguanylate cyclase, GGDEF domain 220 378 1.5E-38 T 26-04-2016 IPR000160 GGDEF domain RGE_RS04595 85b60f929b9325deb7ea6e2a1cf44ec4 390 SUPERFAMILY SSF55073 225 382 2.43E-42 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS04595 85b60f929b9325deb7ea6e2a1cf44ec4 390 Gene3D G3DSA:3.30.70.270 222 385 5.0E-48 T 26-04-2016 RGE_RS04595 85b60f929b9325deb7ea6e2a1cf44ec4 390 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 216 381 2.6E-42 T 26-04-2016 IPR000160 GGDEF domain RGE_RS04595 85b60f929b9325deb7ea6e2a1cf44ec4 390 SMART SM00267 209 382 3.2E-49 T 26-04-2016 IPR000160 GGDEF domain RGE_RS04595 85b60f929b9325deb7ea6e2a1cf44ec4 390 PANTHER PTHR10799 210 383 6.3E-29 T 26-04-2016 RGE_RS04595 85b60f929b9325deb7ea6e2a1cf44ec4 390 PANTHER PTHR10799:SF750 210 383 6.3E-29 T 26-04-2016 RGE_RS21070 f8757c92bea2d991a297293ff10e5af7 203 PANTHER PTHR33751 25 203 4.5E-50 T 26-04-2016 RGE_RS21070 f8757c92bea2d991a297293ff10e5af7 203 SUPERFAMILY SSF46626 115 201 6.21E-22 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS21070 f8757c92bea2d991a297293ff10e5af7 203 PIRSF PIRSF000005 1 203 1.0E-58 T 26-04-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 RGE_RS21070 f8757c92bea2d991a297293ff10e5af7 203 SUPERFAMILY SSF46626 2 108 4.34E-20 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS21070 f8757c92bea2d991a297293ff10e5af7 203 PANTHER PTHR33751:SF3 25 203 4.5E-50 T 26-04-2016 RGE_RS21070 f8757c92bea2d991a297293ff10e5af7 203 Gene3D G3DSA:1.10.760.10 32 103 2.5E-25 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS21070 f8757c92bea2d991a297293ff10e5af7 203 Gene3D G3DSA:1.10.760.10 129 203 1.1E-27 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS21070 f8757c92bea2d991a297293ff10e5af7 203 Pfam PF00034 Cytochrome c 135 201 2.8E-8 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS21070 f8757c92bea2d991a297293ff10e5af7 203 Pfam PF00034 Cytochrome c 35 103 4.3E-5 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS21070 f8757c92bea2d991a297293ff10e5af7 203 PRINTS PR00605 Class IC cytochrome C signature 177 199 1.5E-5 T 26-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 RGE_RS21070 f8757c92bea2d991a297293ff10e5af7 203 PRINTS PR00605 Class IC cytochrome C signature 37 48 1.5E-5 T 26-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 Pfam PF01063 Amino-transferase class IV 405 609 3.8E-37 T 26-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 PANTHER PTHR11236:SF18 117 481 1.2E-122 T 26-04-2016 RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 78 396 6.1E-101 T 26-04-2016 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543|UniPathway: UPA00077 RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 SUPERFAMILY SSF56322 18 397 1.3E-94 T 26-04-2016 IPR005801 ADC synthase GO:0009058 RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 Gene3D G3DSA:3.20.10.10 484 610 1.1E-25 T 26-04-2016 RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 SUPERFAMILY SSF56752 344 610 1.2E-47 T 26-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 Gene3D G3DSA:3.30.470.10 399 466 8.9E-7 T 26-04-2016 RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 PRINTS PR00095 Anthranilate synthase component I signature 322 336 3.7E-9 T 26-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 PRINTS PR00095 Anthranilate synthase component I signature 228 241 3.7E-9 T 26-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 PRINTS PR00095 Anthranilate synthase component I signature 242 255 3.7E-9 T 26-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 PANTHER PTHR11236 117 481 1.2E-122 T 26-04-2016 RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 Pfam PF00425 chorismate binding enzyme 122 392 2.3E-79 T 26-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal RGE_RS19745 885c5bf01a74e638b031b0cd3e8dfa01 620 Gene3D G3DSA:3.60.120.10 13 398 1.5E-115 T 26-04-2016 IPR005801 ADC synthase GO:0009058 RGE_RS06465 5b8e201a0976aced267924837e987d02 451 SUPERFAMILY SSF56281 1 450 8.39E-124 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS06465 5b8e201a0976aced267924837e987d02 451 Pfam PF10996 Beta-Casp domain 246 365 3.6E-23 T 26-04-2016 IPR022712 Beta-Casp domain RGE_RS06465 5b8e201a0976aced267924837e987d02 451 PANTHER PTHR11203:SF11 1 451 2.0E-100 T 26-04-2016 RGE_RS06465 5b8e201a0976aced267924837e987d02 451 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 379 443 2.6E-17 T 26-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain RGE_RS06465 5b8e201a0976aced267924837e987d02 451 SMART SM00849 13 234 5.3E-13 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS06465 5b8e201a0976aced267924837e987d02 451 SMART SM01027 246 366 1.4E-43 T 26-04-2016 IPR022712 Beta-Casp domain RGE_RS06465 5b8e201a0976aced267924837e987d02 451 Gene3D G3DSA:3.60.15.10 135 251 8.3E-43 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS06465 5b8e201a0976aced267924837e987d02 451 Gene3D G3DSA:3.60.15.10 3 100 8.3E-43 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS06465 5b8e201a0976aced267924837e987d02 451 Pfam PF00753 Metallo-beta-lactamase superfamily 22 193 7.9E-14 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS06465 5b8e201a0976aced267924837e987d02 451 PANTHER PTHR11203 1 451 2.0E-100 T 26-04-2016 RGE_RS05355 19651c582efd6328db28a2e6c603fdf3 212 PANTHER PTHR31876 1 207 3.5E-56 T 26-04-2016 RGE_RS05355 19651c582efd6328db28a2e6c603fdf3 212 Pfam PF04367 Protein of unknown function (DUF502) 65 169 4.2E-38 T 26-04-2016 IPR007462 Protein of unknown function DUF502 RGE_RS16405 418f4fff4302163342d8f40231d6d3bb 48 SUPERFAMILY SSF56918 2 48 3.14E-20 T 26-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS16405 418f4fff4302163342d8f40231d6d3bb 48 ProSitePatterns PS00969 Antenna complexes beta subunits signature. 15 46 - T 26-04-2016 IPR023623 Antenna complex, beta subunit, conserved site RGE_RS16405 418f4fff4302163342d8f40231d6d3bb 48 PRINTS PR00674 Light harvesting protein B chain signature 10 30 3.2E-14 T 26-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS16405 418f4fff4302163342d8f40231d6d3bb 48 PRINTS PR00674 Light harvesting protein B chain signature 30 47 3.2E-14 T 26-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS16405 418f4fff4302163342d8f40231d6d3bb 48 Gene3D G3DSA:1.20.5.250 9 48 3.1E-22 T 26-04-2016 RGE_RS16405 418f4fff4302163342d8f40231d6d3bb 48 Pfam PF00556 Antenna complex alpha/beta subunit 14 48 9.4E-12 T 26-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS16405 418f4fff4302163342d8f40231d6d3bb 48 PIRSF PIRSF002900 1 48 1.5E-26 T 26-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS07515 95539dc94b142dfea1fcc81a34576656 332 Pfam PF08448 PAS fold 33 125 1.3E-8 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS07515 95539dc94b142dfea1fcc81a34576656 332 Gene3D G3DSA:3.30.70.270 166 324 2.7E-30 T 26-04-2016 RGE_RS07515 95539dc94b142dfea1fcc81a34576656 332 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 160 324 7.0E-24 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07515 95539dc94b142dfea1fcc81a34576656 332 SUPERFAMILY SSF55785 35 126 3.07E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS07515 95539dc94b142dfea1fcc81a34576656 332 SUPERFAMILY SSF55073 170 324 1.96E-26 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS07515 95539dc94b142dfea1fcc81a34576656 332 Pfam PF00990 Diguanylate cyclase, GGDEF domain 164 320 4.9E-22 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07515 95539dc94b142dfea1fcc81a34576656 332 Gene3D G3DSA:3.30.450.20 32 109 6.7E-10 T 26-04-2016 RGE_RS07515 95539dc94b142dfea1fcc81a34576656 332 SMART SM00267 153 325 1.6E-22 T 26-04-2016 IPR000160 GGDEF domain RGE_RS22710 b1aae2d335f2ec082fcc8f7df9022875 277 SUPERFAMILY SSF103481 37 132 2.35E-11 T 26-04-2016 RGE_RS22710 b1aae2d335f2ec082fcc8f7df9022875 277 Pfam PF00892 EamA-like transporter family 141 274 7.9E-13 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS22710 b1aae2d335f2ec082fcc8f7df9022875 277 SUPERFAMILY SSF103481 177 275 1.14E-15 T 26-04-2016 RGE_RS22710 b1aae2d335f2ec082fcc8f7df9022875 277 PANTHER PTHR22911:SF61 6 276 5.6E-76 T 26-04-2016 RGE_RS22710 b1aae2d335f2ec082fcc8f7df9022875 277 PANTHER PTHR22911 6 276 5.6E-76 T 26-04-2016 RGE_RS03565 75bb4c4bd628b3792bda83509a3359ab 207 SUPERFAMILY SSF48498 91 204 9.53E-19 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS03565 75bb4c4bd628b3792bda83509a3359ab 207 SUPERFAMILY SSF46689 13 86 2.05E-16 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS03565 75bb4c4bd628b3792bda83509a3359ab 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 8.5E-7 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS03565 75bb4c4bd628b3792bda83509a3359ab 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 8.5E-7 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS03565 75bb4c4bd628b3792bda83509a3359ab 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 70 2.6E-11 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS03565 75bb4c4bd628b3792bda83509a3359ab 207 Pfam PF13305 WHG domain 98 177 1.7E-15 T 26-04-2016 IPR025996 WHG domain RGE_RS03565 75bb4c4bd628b3792bda83509a3359ab 207 Gene3D G3DSA:1.10.357.10 11 205 4.4E-40 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS03565 75bb4c4bd628b3792bda83509a3359ab 207 PANTHER PTHR30055:SF23 21 195 1.0E-25 T 26-04-2016 RGE_RS03565 75bb4c4bd628b3792bda83509a3359ab 207 PANTHER PTHR30055 21 195 1.0E-25 T 26-04-2016 RGE_RS21775 98e2f9d5cf5ab024a9ffcb705b2935a1 324 SUPERFAMILY SSF81345 3 322 5.89E-66 T 26-04-2016 IPR029022 ABC transporter, BtuC-like RGE_RS21775 98e2f9d5cf5ab024a9ffcb705b2935a1 324 PANTHER PTHR30472:SF3 1 324 2.1E-90 T 26-04-2016 RGE_RS21775 98e2f9d5cf5ab024a9ffcb705b2935a1 324 Pfam PF01032 FecCD transport family 14 321 1.4E-76 T 26-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RGE_RS21775 98e2f9d5cf5ab024a9ffcb705b2935a1 324 PANTHER PTHR30472 1 324 2.1E-90 T 26-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RGE_RS21775 98e2f9d5cf5ab024a9ffcb705b2935a1 324 Gene3D G3DSA:1.10.3470.10 2 323 1.0E-85 T 26-04-2016 IPR029022 ABC transporter, BtuC-like RGE_RS11900 9ffda8adfda59a9b453d29e7b452e492 336 SMART SM00829 16 333 2.5E-6 T 26-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RGE_RS11900 9ffda8adfda59a9b453d29e7b452e492 336 Gene3D G3DSA:3.90.180.10 1 140 9.7E-55 T 26-04-2016 IPR011032 GroES-like RGE_RS11900 9ffda8adfda59a9b453d29e7b452e492 336 PANTHER PTHR11695:SF528 21 334 9.9E-115 T 26-04-2016 RGE_RS11900 9ffda8adfda59a9b453d29e7b452e492 336 SUPERFAMILY SSF51735 123 300 2.55E-42 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11900 9ffda8adfda59a9b453d29e7b452e492 336 PANTHER PTHR11695 21 334 9.9E-115 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS11900 9ffda8adfda59a9b453d29e7b452e492 336 Pfam PF00107 Zinc-binding dehydrogenase 158 294 2.3E-21 T 26-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RGE_RS11900 9ffda8adfda59a9b453d29e7b452e492 336 SUPERFAMILY SSF50129 289 334 2.02E-5 T 26-04-2016 IPR011032 GroES-like RGE_RS11900 9ffda8adfda59a9b453d29e7b452e492 336 Pfam PF16884 N-terminal domain of oxidoreductase 5 106 3.5E-42 T 26-04-2016 RGE_RS11900 9ffda8adfda59a9b453d29e7b452e492 336 SUPERFAMILY SSF50129 2 139 5.14E-41 T 26-04-2016 IPR011032 GroES-like RGE_RS11900 9ffda8adfda59a9b453d29e7b452e492 336 Gene3D G3DSA:3.40.50.720 141 303 3.9E-60 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS13815 4fa84c076535dc532a9b7a6649fe1087 196 SMART SM00857 6 147 7.3E-51 T 26-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RGE_RS13815 4fa84c076535dc532a9b7a6649fe1087 196 Gene3D G3DSA:1.10.10.60 149 191 3.9E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS13815 4fa84c076535dc532a9b7a6649fe1087 196 PANTHER PTHR30461:SF9 3 196 1.8E-47 T 26-04-2016 RGE_RS13815 4fa84c076535dc532a9b7a6649fe1087 196 ProSitePatterns PS00397 Site-specific recombinases active site. 9 17 - T 26-04-2016 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 RGE_RS13815 4fa84c076535dc532a9b7a6649fe1087 196 SUPERFAMILY SSF53041 5 147 5.1E-38 T 26-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RGE_RS13815 4fa84c076535dc532a9b7a6649fe1087 196 Pfam PF02796 Helix-turn-helix domain of resolvase 149 189 2.9E-7 T 26-04-2016 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 RGE_RS13815 4fa84c076535dc532a9b7a6649fe1087 196 ProSitePatterns PS00398 Site-specific recombinases signature 2. 65 77 - T 26-04-2016 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 RGE_RS13815 4fa84c076535dc532a9b7a6649fe1087 196 Gene3D G3DSA:3.40.50.1390 5 130 4.2E-35 T 26-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RGE_RS13815 4fa84c076535dc532a9b7a6649fe1087 196 PANTHER PTHR30461 3 196 1.8E-47 T 26-04-2016 RGE_RS13815 4fa84c076535dc532a9b7a6649fe1087 196 Pfam PF00239 Resolvase, N terminal domain 6 147 1.5E-38 T 26-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RGE_RS13925 d88d03d95273126b08a3755a0ab99634 480 SUPERFAMILY SSF56024 100 309 4.08E-37 T 26-04-2016 RGE_RS13925 d88d03d95273126b08a3755a0ab99634 480 Gene3D G3DSA:3.30.870.10 102 311 1.4E-36 T 26-04-2016 RGE_RS13925 d88d03d95273126b08a3755a0ab99634 480 SMART SM00155 209 236 0.063 T 26-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RGE_RS13925 d88d03d95273126b08a3755a0ab99634 480 SMART SM00155 393 420 4.5E-5 T 26-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RGE_RS13925 d88d03d95273126b08a3755a0ab99634 480 Gene3D G3DSA:3.30.870.10 316 456 2.0E-38 T 26-04-2016 RGE_RS13925 d88d03d95273126b08a3755a0ab99634 480 PANTHER PTHR21248:SF5 101 478 6.0E-89 T 26-04-2016 RGE_RS13925 d88d03d95273126b08a3755a0ab99634 480 SUPERFAMILY SSF56024 297 467 1.91E-45 T 26-04-2016 RGE_RS13925 d88d03d95273126b08a3755a0ab99634 480 Pfam PF13091 PLD-like domain 321 447 3.4E-27 T 26-04-2016 IPR025202 Phospholipase D-like domain RGE_RS13925 d88d03d95273126b08a3755a0ab99634 480 Pfam PF13091 PLD-like domain 125 234 8.1E-7 T 26-04-2016 IPR025202 Phospholipase D-like domain RGE_RS13925 d88d03d95273126b08a3755a0ab99634 480 PANTHER PTHR21248 101 478 6.0E-89 T 26-04-2016 RGE_RS05865 866d340377cd7f20af14f745a854cf6f 230 PRINTS PR01837 MgtC/SapB protein signature 34 52 1.1E-40 T 26-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RGE_RS05865 866d340377cd7f20af14f745a854cf6f 230 PRINTS PR01837 MgtC/SapB protein signature 15 34 1.1E-40 T 26-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RGE_RS05865 866d340377cd7f20af14f745a854cf6f 230 PRINTS PR01837 MgtC/SapB protein signature 97 121 1.1E-40 T 26-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RGE_RS05865 866d340377cd7f20af14f745a854cf6f 230 PRINTS PR01837 MgtC/SapB protein signature 70 92 1.1E-40 T 26-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RGE_RS05865 866d340377cd7f20af14f745a854cf6f 230 Pfam PF02308 MgtC family 12 143 8.5E-39 T 26-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RGE_RS05865 866d340377cd7f20af14f745a854cf6f 230 PANTHER PTHR33778 12 225 1.9E-52 T 26-04-2016 RGE_RS13395 b2ad267ca943ceac7f05399fa0b4a9c4 226 Pfam PF09976 Tetratricopeptide repeat-like domain 17 210 9.2E-61 T 26-04-2016 IPR018704 Tetratricopeptide repeat-like domain RGE_RS13395 b2ad267ca943ceac7f05399fa0b4a9c4 226 PIRSF PIRSF006170 3 215 1.6E-56 T 26-04-2016 IPR026039 Uncharacterised protein family UPF0070 RGE_RS13395 b2ad267ca943ceac7f05399fa0b4a9c4 226 SUPERFAMILY SSF48452 98 199 1.52E-7 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS13395 b2ad267ca943ceac7f05399fa0b4a9c4 226 Gene3D G3DSA:1.25.40.10 99 197 2.4E-4 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS13395 b2ad267ca943ceac7f05399fa0b4a9c4 226 PANTHER PTHR38035 4 211 2.5E-37 T 26-04-2016 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 Pfam PF00342 Phosphoglucose isomerase 50 524 2.0E-176 T 26-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 PANTHER PTHR11469 1 528 1.4E-248 T 26-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 Gene3D G3DSA:1.10.1390.10 491 528 2.1E-16 T 26-04-2016 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 PRINTS PR00662 Glucose-6-phosphate isomerase signature 467 481 2.3E-53 T 26-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 PRINTS PR00662 Glucose-6-phosphate isomerase signature 135 154 2.3E-53 T 26-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 PRINTS PR00662 Glucose-6-phosphate isomerase signature 245 263 2.3E-53 T 26-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 PRINTS PR00662 Glucose-6-phosphate isomerase signature 322 343 2.3E-53 T 26-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 PRINTS PR00662 Glucose-6-phosphate isomerase signature 481 494 2.3E-53 T 26-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 PRINTS PR00662 Glucose-6-phosphate isomerase signature 449 467 2.3E-53 T 26-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 249 262 - T 26-04-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 Gene3D G3DSA:3.40.50.10490 110 274 8.4E-67 T 26-04-2016 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 SUPERFAMILY SSF53697 4 528 5.28E-189 T 26-04-2016 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 481 498 - T 26-04-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 44 508 39.663 T 26-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 Gene3D G3DSA:3.40.50.10490 7 96 5.2E-121 T 26-04-2016 RGE_RS04120 652ed9d1f3bfe9ec204b4f97d1c2fd8c 529 Gene3D G3DSA:3.40.50.10490 277 490 5.2E-121 T 26-04-2016 RGE_RS08925 0245cff55d9349611b281b63b9f042d6 457 PANTHER PTHR11963:SF13 100 457 1.6E-137 T 26-04-2016 RGE_RS08925 0245cff55d9349611b281b63b9f042d6 457 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 147 448 4.2E-97 T 26-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RGE_RS08925 0245cff55d9349611b281b63b9f042d6 457 SUPERFAMILY SSF53187 141 455 2.01E-100 T 26-04-2016 RGE_RS08925 0245cff55d9349611b281b63b9f042d6 457 PRINTS PR00481 Cytosol aminopeptidase signature 301 321 1.6E-43 T 26-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RGE_RS08925 0245cff55d9349611b281b63b9f042d6 457 PRINTS PR00481 Cytosol aminopeptidase signature 279 300 1.6E-43 T 26-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RGE_RS08925 0245cff55d9349611b281b63b9f042d6 457 PRINTS PR00481 Cytosol aminopeptidase signature 242 263 1.6E-43 T 26-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RGE_RS08925 0245cff55d9349611b281b63b9f042d6 457 PRINTS PR00481 Cytosol aminopeptidase signature 220 237 1.6E-43 T 26-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RGE_RS08925 0245cff55d9349611b281b63b9f042d6 457 PRINTS PR00481 Cytosol aminopeptidase signature 329 344 1.6E-43 T 26-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RGE_RS08925 0245cff55d9349611b281b63b9f042d6 457 PANTHER PTHR11963 100 457 1.6E-137 T 26-04-2016 RGE_RS08925 0245cff55d9349611b281b63b9f042d6 457 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 305 312 - T 26-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RGE_RS08925 0245cff55d9349611b281b63b9f042d6 457 Gene3D G3DSA:3.40.630.10 133 455 6.4E-110 T 26-04-2016 RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 PANTHER PTHR32282 445 750 5.9E-235 T 26-04-2016 RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 PANTHER PTHR32282 9 339 5.9E-235 T 26-04-2016 RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 SUPERFAMILY SSF56601 241 263 6.84E-120 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 SUPERFAMILY SSF56601 446 753 6.84E-120 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 SUPERFAMILY SSF56601 291 342 6.84E-120 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 Gene3D G3DSA:1.10.3810.10 87 262 6.6E-74 T 26-04-2016 RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 Pfam PF00912 Transglycosylase 86 259 6.4E-64 T 26-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 SUPERFAMILY SSF53955 73 281 2.81E-74 T 26-04-2016 IPR023346 Lysozyme-like domain RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 Gene3D G3DSA:2.40.50.140 376 445 2.9E-22 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 96 734 5.3E-188 T 26-04-2016 RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 Pfam PF00905 Penicillin binding protein transpeptidase domain 451 706 2.6E-38 T 26-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 PANTHER PTHR32282:SF5 445 750 5.9E-235 T 26-04-2016 RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 PANTHER PTHR32282:SF5 9 339 5.9E-235 T 26-04-2016 RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 Pfam PF17092 Penicillin-binding protein OB-like domain 345 449 8.2E-21 T 26-04-2016 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00230+2.4.2.-|KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00514+2.4.2.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00219 RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 Gene3D G3DSA:3.40.710.10 263 342 2.3E-128 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS04000 8837cb05f22aba0c3e7b333a6d1cd239 793 Gene3D G3DSA:3.40.710.10 446 754 2.3E-128 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS14860 e8bb41591b2533b9ccedfca0d59840c0 809 Gene3D G3DSA:2.40.170.20 283 809 2.4E-141 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14860 e8bb41591b2533b9ccedfca0d59840c0 809 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 168 808 3.0E-108 T 26-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 RGE_RS14860 e8bb41591b2533b9ccedfca0d59840c0 809 PANTHER PTHR32552 158 809 4.9E-154 T 26-04-2016 RGE_RS14860 e8bb41591b2533b9ccedfca0d59840c0 809 PANTHER PTHR32552 122 137 4.9E-154 T 26-04-2016 RGE_RS14860 e8bb41591b2533b9ccedfca0d59840c0 809 Gene3D G3DSA:2.170.130.10 135 280 1.5E-30 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14860 e8bb41591b2533b9ccedfca0d59840c0 809 Pfam PF07715 TonB-dependent Receptor Plug Domain 167 269 5.8E-16 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14860 e8bb41591b2533b9ccedfca0d59840c0 809 SMART SM00965 73 124 1.9E-6 T 26-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RGE_RS14860 e8bb41591b2533b9ccedfca0d59840c0 809 SUPERFAMILY SSF56935 158 809 1.93E-119 T 26-04-2016 RGE_RS14860 e8bb41591b2533b9ccedfca0d59840c0 809 Pfam PF00593 TonB dependent receptor 578 808 2.4E-27 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14860 e8bb41591b2533b9ccedfca0d59840c0 809 PANTHER PTHR32552:SF17 158 809 4.9E-154 T 26-04-2016 RGE_RS14860 e8bb41591b2533b9ccedfca0d59840c0 809 PANTHER PTHR32552:SF17 122 137 4.9E-154 T 26-04-2016 RGE_RS06370 a99237bdea70278f646e48451a2744bb 281 Pfam PF00583 Acetyltransferase (GNAT) family 188 259 2.6E-12 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS06370 a99237bdea70278f646e48451a2744bb 281 SUPERFAMILY SSF54593 2 140 2.89E-21 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS06370 a99237bdea70278f646e48451a2744bb 281 PANTHER PTHR35006 1 128 2.7E-36 T 26-04-2016 RGE_RS06370 a99237bdea70278f646e48451a2744bb 281 Gene3D G3DSA:3.40.630.30 138 259 1.2E-23 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06370 a99237bdea70278f646e48451a2744bb 281 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 124 5.0E-8 T 26-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RGE_RS06370 a99237bdea70278f646e48451a2744bb 281 Gene3D G3DSA:3.10.180.10 2 127 1.4E-27 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS06370 a99237bdea70278f646e48451a2744bb 281 SUPERFAMILY SSF55729 144 263 1.41E-23 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS07695 620466ea98cc18810067a29873bb1e2c 165 PANTHER PTHR10849 5 165 1.1E-87 T 26-04-2016 RGE_RS07695 620466ea98cc18810067a29873bb1e2c 165 PANTHER PTHR10849:SF20 5 165 1.1E-87 T 26-04-2016 RGE_RS07695 620466ea98cc18810067a29873bb1e2c 165 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 13 162 28.738 T 26-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RGE_RS07695 620466ea98cc18810067a29873bb1e2c 165 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 22 143 6.2E-46 T 26-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RGE_RS07695 620466ea98cc18810067a29873bb1e2c 165 SUPERFAMILY SSF54862 39 147 5.02E-26 T 26-04-2016 RGE_RS07695 620466ea98cc18810067a29873bb1e2c 165 Gene3D G3DSA:1.10.1060.10 18 131 7.5E-23 T 26-04-2016 RGE_RS07695 620466ea98cc18810067a29873bb1e2c 165 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 66 77 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS07695 620466ea98cc18810067a29873bb1e2c 165 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 105 116 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS07695 620466ea98cc18810067a29873bb1e2c 165 Pfam PF12838 4Fe-4S dicluster domain 65 118 2.0E-11 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS21705 f85ab909594b232daba3e563888a1c49 271 Pfam PF06738 Putative threonine/serine exporter 27 265 8.8E-57 T 26-04-2016 IPR010619 Putative threonine/serine exporter RGE_RS21705 f85ab909594b232daba3e563888a1c49 271 PANTHER PTHR34390:SF2 22 270 1.4E-82 T 26-04-2016 RGE_RS21705 f85ab909594b232daba3e563888a1c49 271 PANTHER PTHR34390 22 270 1.4E-82 T 26-04-2016 RGE_RS11545 3921b876643fd77cb3fbbfd8e12be03e 472 Gene3D G3DSA:3.30.70.270 75 224 6.7E-6 T 26-04-2016 RGE_RS11545 3921b876643fd77cb3fbbfd8e12be03e 472 Pfam PF00563 EAL domain 243 467 3.5E-30 T 26-04-2016 IPR001633 EAL domain RGE_RS11545 3921b876643fd77cb3fbbfd8e12be03e 472 SMART SM00267 62 228 1.1E-4 T 26-04-2016 IPR000160 GGDEF domain RGE_RS11545 3921b876643fd77cb3fbbfd8e12be03e 472 SUPERFAMILY SSF141868 243 466 5.75E-27 T 26-04-2016 IPR001633 EAL domain RGE_RS11545 3921b876643fd77cb3fbbfd8e12be03e 472 Gene3D G3DSA:3.20.20.450 240 467 1.9E-26 T 26-04-2016 IPR001633 EAL domain RGE_RS11545 3921b876643fd77cb3fbbfd8e12be03e 472 SMART SM00052 236 472 1.5E-5 T 26-04-2016 IPR001633 EAL domain RGE_RS11545 3921b876643fd77cb3fbbfd8e12be03e 472 Pfam PF00990 Diguanylate cyclase, GGDEF domain 73 221 4.8E-5 T 26-04-2016 IPR000160 GGDEF domain RGE_RS22020 972a9a5b1836ddf9d22a6de12b2abc4a 259 SUPERFAMILY SSF109604 40 226 8.85E-38 T 26-04-2016 RGE_RS22020 972a9a5b1836ddf9d22a6de12b2abc4a 259 Pfam PF01966 HD domain 65 187 1.2E-17 T 26-04-2016 IPR006674 HD domain RGE_RS22020 972a9a5b1836ddf9d22a6de12b2abc4a 259 Gene3D G3DSA:1.10.3210.10 60 228 3.8E-19 T 26-04-2016 IPR006674 HD domain RGE_RS22020 972a9a5b1836ddf9d22a6de12b2abc4a 259 SMART SM00471 60 197 5.1E-7 T 26-04-2016 IPR003607 HD/PDEase domain RGE_RS03860 251915b7f5d9e85cb7e0bc1545fe6a82 603 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 432 594 4.6E-35 T 26-04-2016 IPR000160 GGDEF domain RGE_RS03860 251915b7f5d9e85cb7e0bc1545fe6a82 603 Gene3D G3DSA:3.30.70.270 438 595 2.0E-52 T 26-04-2016 RGE_RS03860 251915b7f5d9e85cb7e0bc1545fe6a82 603 SMART SM00267 425 596 3.0E-53 T 26-04-2016 IPR000160 GGDEF domain RGE_RS03860 251915b7f5d9e85cb7e0bc1545fe6a82 603 SUPERFAMILY SSF55073 441 595 1.96E-45 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS03860 251915b7f5d9e85cb7e0bc1545fe6a82 603 Pfam PF07696 7TMR-DISM extracellular 2 65 196 3.5E-29 T 26-04-2016 IPR011622 7TM-DISM receptor, extracellular domain, type 2 RGE_RS03860 251915b7f5d9e85cb7e0bc1545fe6a82 603 Pfam PF00990 Diguanylate cyclase, GGDEF domain 436 591 6.0E-43 T 26-04-2016 IPR000160 GGDEF domain RGE_RS03860 251915b7f5d9e85cb7e0bc1545fe6a82 603 PANTHER PTHR10799:SF774 407 591 2.1E-35 T 26-04-2016 RGE_RS03860 251915b7f5d9e85cb7e0bc1545fe6a82 603 Pfam PF07695 7TM diverse intracellular signalling 209 405 1.5E-25 T 26-04-2016 IPR011623 7TM-DISM receptor, extracellular domain, type 1 RGE_RS03860 251915b7f5d9e85cb7e0bc1545fe6a82 603 PANTHER PTHR10799 407 591 2.1E-35 T 26-04-2016 RGE_RS11155 3cb218421a1c620f8952e319dc6c9359 324 PANTHER PTHR30349 5 291 2.6E-59 T 26-04-2016 RGE_RS11155 3cb218421a1c620f8952e319dc6c9359 324 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 47 319 7.1E-54 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS11155 3cb218421a1c620f8952e319dc6c9359 324 PIRSF PIRSF017082 1 324 4.4E-59 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS11155 3cb218421a1c620f8952e319dc6c9359 324 PANTHER PTHR30349:SF1 5 291 2.6E-59 T 26-04-2016 RGE_RS11155 3cb218421a1c620f8952e319dc6c9359 324 SUPERFAMILY SSF53850 113 284 1.14E-5 T 26-04-2016 RGE_RS13210 7a50700005ee1f5041f1679798f8f9f1 96 TIGRFAM TIGR00165 S18: ribosomal protein bS18 25 92 8.7E-33 T 26-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13210 7a50700005ee1f5041f1679798f8f9f1 96 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 22 93 19.832 T 26-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13210 7a50700005ee1f5041f1679798f8f9f1 96 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 41 93 1.0E-20 T 26-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13210 7a50700005ee1f5041f1679798f8f9f1 96 PRINTS PR00974 Ribosomal protein S18 family signature 48 58 2.6E-16 T 26-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13210 7a50700005ee1f5041f1679798f8f9f1 96 PRINTS PR00974 Ribosomal protein S18 family signature 66 80 2.6E-16 T 26-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13210 7a50700005ee1f5041f1679798f8f9f1 96 PRINTS PR00974 Ribosomal protein S18 family signature 58 65 2.6E-16 T 26-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13210 7a50700005ee1f5041f1679798f8f9f1 96 PRINTS PR00974 Ribosomal protein S18 family signature 80 90 2.6E-16 T 26-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13210 7a50700005ee1f5041f1679798f8f9f1 96 Pfam PF01084 Ribosomal protein S18 38 88 1.2E-22 T 26-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13210 7a50700005ee1f5041f1679798f8f9f1 96 PANTHER PTHR13479 23 90 4.0E-24 T 26-04-2016 RGE_RS13210 7a50700005ee1f5041f1679798f8f9f1 96 SUPERFAMILY SSF46911 21 94 3.79E-26 T 26-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13210 7a50700005ee1f5041f1679798f8f9f1 96 Gene3D G3DSA:4.10.640.10 28 94 7.7E-29 T 26-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13210 7a50700005ee1f5041f1679798f8f9f1 96 ProSitePatterns PS00057 Ribosomal protein S18 signature. 41 64 - T 26-04-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS19025 5600c57f0c83d313a94e6eb2d530c2ec 178 SUPERFAMILY SSF54523 19 110 4.24E-8 T 26-04-2016 RGE_RS19025 5600c57f0c83d313a94e6eb2d530c2ec 178 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 16 36 - T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS19025 5600c57f0c83d313a94e6eb2d530c2ec 178 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 16 38 0.0014 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS19025 5600c57f0c83d313a94e6eb2d530c2ec 178 Pfam PF12019 Type II transport protein GspH 54 161 1.7E-5 T 26-04-2016 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 RGE_RS08305 7b2a8f3e80757f89f8018066436a26e7 144 TIGRFAM TIGR00208 fliS: flagellar protein FliS 15 133 4.0E-27 T 26-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RGE_RS08305 7b2a8f3e80757f89f8018066436a26e7 144 Pfam PF02561 Flagellar protein FliS 16 133 1.8E-33 T 26-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RGE_RS08305 7b2a8f3e80757f89f8018066436a26e7 144 Gene3D G3DSA:1.20.120.340 16 137 7.1E-35 T 26-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RGE_RS08305 7b2a8f3e80757f89f8018066436a26e7 144 PIRSF PIRSF039090 10 138 3.0E-36 T 26-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RGE_RS08305 7b2a8f3e80757f89f8018066436a26e7 144 PANTHER PTHR34773 7 135 2.2E-29 T 26-04-2016 RGE_RS08305 7b2a8f3e80757f89f8018066436a26e7 144 SUPERFAMILY SSF101116 16 137 6.28E-32 T 26-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 SMART SM00091 8 75 0.0034 T 26-04-2016 IPR000014 PAS domain RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 SMART SM00304 212 264 5.4E-7 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 1.2E-47 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 1.2E-47 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 1.2E-47 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 1.2E-47 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 PANTHER PTHR32089:SF63 199 515 4.9E-125 T 26-04-2016 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 SMART SM00283 265 512 8.1E-77 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 Pfam PF00672 HAMP domain 194 259 2.5E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 SMART SM00086 80 121 0.0011 T 26-04-2016 IPR001610 PAC motif RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 Gene3D G3DSA:3.30.450.20 20 114 5.1E-25 T 26-04-2016 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 PANTHER PTHR32089 199 515 4.9E-125 T 26-04-2016 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 Gene3D G3DSA:1.10.287.950 280 484 1.3E-55 T 26-04-2016 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 SUPERFAMILY SSF58104 232 513 1.44E-68 T 26-04-2016 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 Pfam PF08447 PAS fold 30 114 9.3E-16 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 114 3.8E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 SUPERFAMILY SSF55785 21 114 6.81E-27 T 26-04-2016 IPR000014 PAS domain RGE_RS16785 e159607ba2450152d9a2e56807681ad6 549 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 320 511 4.9E-52 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS01275 303881ef3902b539e354a766cabaf449 517 Gene3D G3DSA:3.10.650.10 204 270 8.2E-20 T 26-04-2016 RGE_RS01275 303881ef3902b539e354a766cabaf449 517 Gene3D G3DSA:1.20.58.370 5 90 1.5E-24 T 26-04-2016 RGE_RS01275 303881ef3902b539e354a766cabaf449 517 SUPERFAMILY SSF161098 263 502 1.19E-53 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS01275 303881ef3902b539e354a766cabaf449 517 Gene3D G3DSA:1.10.3720.10 277 511 4.2E-56 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS01275 303881ef3902b539e354a766cabaf449 517 PANTHER PTHR30193:SF22 261 516 9.9E-125 T 26-04-2016 RGE_RS01275 303881ef3902b539e354a766cabaf449 517 PANTHER PTHR30193:SF22 54 100 9.9E-125 T 26-04-2016 RGE_RS01275 303881ef3902b539e354a766cabaf449 517 SUPERFAMILY SSF160964 9 262 1.22E-55 T 26-04-2016 RGE_RS01275 303881ef3902b539e354a766cabaf449 517 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 310 505 5.8E-15 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS01275 303881ef3902b539e354a766cabaf449 517 Gene3D G3DSA:2.40.430.10 115 203 3.0E-19 T 26-04-2016 RGE_RS01275 303881ef3902b539e354a766cabaf449 517 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 95 262 1.6E-39 T 26-04-2016 IPR029345 Maltose transport system permease protein MalF, P2 domain RGE_RS01275 303881ef3902b539e354a766cabaf449 517 PANTHER PTHR30193 261 516 9.9E-125 T 26-04-2016 RGE_RS01275 303881ef3902b539e354a766cabaf449 517 PANTHER PTHR30193 54 100 9.9E-125 T 26-04-2016 RGE_RS16650 4a87a63aea37af55ce684539769c892b 77 Gene3D G3DSA:2.30.170.40 2 76 6.5E-37 T 26-04-2016 RGE_RS16650 4a87a63aea37af55ce684539769c892b 77 Pfam PF00830 Ribosomal L28 family 3 61 3.3E-28 T 26-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 RGE_RS16650 4a87a63aea37af55ce684539769c892b 77 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 3.4E-28 T 26-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS16650 4a87a63aea37af55ce684539769c892b 77 PANTHER PTHR13528 1 69 5.7E-33 T 26-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 RGE_RS16650 4a87a63aea37af55ce684539769c892b 77 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.907 T 26-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS16650 4a87a63aea37af55ce684539769c892b 77 SUPERFAMILY SSF143800 1 76 6.67E-31 T 26-04-2016 RGE_RS21780 a2c41db9a9e5b60af3d6c3bddc46b280 245 PANTHER PTHR24220 10 234 1.6E-64 T 26-04-2016 RGE_RS21780 a2c41db9a9e5b60af3d6c3bddc46b280 245 PANTHER PTHR24220:SF558 10 234 1.6E-64 T 26-04-2016 RGE_RS21780 a2c41db9a9e5b60af3d6c3bddc46b280 245 SMART SM00382 33 205 2.3E-7 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21780 a2c41db9a9e5b60af3d6c3bddc46b280 245 Pfam PF00005 ABC transporter 27 158 7.3E-24 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS21780 a2c41db9a9e5b60af3d6c3bddc46b280 245 Gene3D G3DSA:3.40.50.300 10 221 8.5E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21780 a2c41db9a9e5b60af3d6c3bddc46b280 245 SUPERFAMILY SSF52540 7 220 2.96E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21780 a2c41db9a9e5b60af3d6c3bddc46b280 245 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS13200 b08703771eca9323fa9174ed6071228c 469 Pfam PF00772 DnaB-like helicase N terminal domain 23 124 3.3E-33 T 26-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RGE_RS13200 b08703771eca9323fa9174ed6071228c 469 SUPERFAMILY SSF52540 200 451 1.29E-51 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13200 b08703771eca9323fa9174ed6071228c 469 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 23 461 2.6E-175 T 26-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 RGE_RS13200 b08703771eca9323fa9174ed6071228c 469 Gene3D G3DSA:1.10.860.10 23 125 5.2E-36 T 26-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RGE_RS13200 b08703771eca9323fa9174ed6071228c 469 PANTHER PTHR30153 7 469 9.5E-205 T 26-04-2016 RGE_RS13200 b08703771eca9323fa9174ed6071228c 469 Gene3D G3DSA:3.40.50.300 195 461 1.0E-103 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13200 b08703771eca9323fa9174ed6071228c 469 SMART SM00382 219 419 3.0E-5 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS13200 b08703771eca9323fa9174ed6071228c 469 Pfam PF03796 DnaB-like helicase C terminal domain 202 459 3.6E-116 T 26-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 RGE_RS13200 b08703771eca9323fa9174ed6071228c 469 SUPERFAMILY SSF48024 21 132 1.01E-35 T 26-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RGE_RS13200 b08703771eca9323fa9174ed6071228c 469 TIGRFAM TIGR03600 phage_DnaB: phage replicative helicase, DnaB family 27 450 2.4E-150 T 26-04-2016 IPR019889 DNA helicase, DnaB-like, phage RGE_RS21230 3fe4729a124e49aa7073840edc82c5ca 220 Gene3D G3DSA:3.40.1050.10 3 216 5.3E-73 T 26-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RGE_RS21230 3fe4729a124e49aa7073840edc82c5ca 220 Pfam PF00484 Carbonic anhydrase 38 188 3.0E-48 T 26-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RGE_RS21230 3fe4729a124e49aa7073840edc82c5ca 220 PANTHER PTHR11002:SF20 3 208 1.8E-103 T 26-04-2016 RGE_RS21230 3fe4729a124e49aa7073840edc82c5ca 220 SMART SM00947 31 193 4.3E-63 T 26-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RGE_RS21230 3fe4729a124e49aa7073840edc82c5ca 220 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 43 50 - T 26-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RGE_RS21230 3fe4729a124e49aa7073840edc82c5ca 220 PANTHER PTHR11002 3 208 1.8E-103 T 26-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RGE_RS21230 3fe4729a124e49aa7073840edc82c5ca 220 SUPERFAMILY SSF53056 2 205 2.88E-71 T 26-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RGE_RS21230 3fe4729a124e49aa7073840edc82c5ca 220 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 83 103 - T 26-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RGE_RS06365 66f00e250895c075d05e197fe14c435f 180 SUPERFAMILY SSF52540 1 123 7.3E-14 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06365 66f00e250895c075d05e197fe14c435f 180 Gene3D G3DSA:3.40.50.300 1 126 2.0E-12 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06365 66f00e250895c075d05e197fe14c435f 180 PANTHER PTHR37816:SF1 1 180 8.6E-37 T 26-04-2016 RGE_RS06365 66f00e250895c075d05e197fe14c435f 180 Pfam PF13671 AAA domain 3 35 2.7E-6 T 26-04-2016 RGE_RS06365 66f00e250895c075d05e197fe14c435f 180 PANTHER PTHR37816 1 180 8.6E-37 T 26-04-2016 RGE_RS11555 c535c89957dbd960858c2cf64ad49484 229 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 24 228 2.2E-52 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS11555 c535c89957dbd960858c2cf64ad49484 229 PANTHER PTHR11820:SF7 22 229 5.2E-85 T 26-04-2016 RGE_RS11555 c535c89957dbd960858c2cf64ad49484 229 SUPERFAMILY SSF56529 20 228 1.7E-69 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS11555 c535c89957dbd960858c2cf64ad49484 229 Gene3D G3DSA:3.90.850.10 20 228 1.7E-78 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS11555 c535c89957dbd960858c2cf64ad49484 229 PANTHER PTHR11820 22 229 5.2E-85 T 26-04-2016 RGE_RS15335 6cc41732eea846d3fd14640cbcc845fc 450 SUPERFAMILY SSF53383 52 443 6.87E-96 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS15335 6cc41732eea846d3fd14640cbcc845fc 450 Gene3D G3DSA:3.90.1150.10 334 444 2.3E-29 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS15335 6cc41732eea846d3fd14640cbcc845fc 450 Pfam PF00202 Aminotransferase class-III 52 442 2.5E-77 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS15335 6cc41732eea846d3fd14640cbcc845fc 450 PANTHER PTHR11986 30 450 4.0E-103 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS15335 6cc41732eea846d3fd14640cbcc845fc 450 Gene3D G3DSA:3.40.640.10 85 333 6.4E-67 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS15335 6cc41732eea846d3fd14640cbcc845fc 450 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 261 298 - T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS09305 2ce9110c91c5cfed4a2e4e2cc17f2166 253 SUPERFAMILY SSF53790 6 227 1.13E-22 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09305 2ce9110c91c5cfed4a2e4e2cc17f2166 253 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 7 201 3.6E-20 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09305 2ce9110c91c5cfed4a2e4e2cc17f2166 253 Gene3D G3DSA:3.40.1010.10 10 110 5.0E-7 T 26-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RGE_RS02765 a91be00d18ba14d1303774eabcc2ddb4 420 SUPERFAMILY SSF53448 53 329 7.59E-64 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS02765 a91be00d18ba14d1303774eabcc2ddb4 420 PANTHER PTHR10859 43 404 6.0E-92 T 26-04-2016 RGE_RS02765 a91be00d18ba14d1303774eabcc2ddb4 420 Gene3D G3DSA:3.90.550.10 59 301 5.7E-48 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS02765 a91be00d18ba14d1303774eabcc2ddb4 420 Pfam PF13641 Glycosyltransferase like family 2 59 281 3.1E-41 T 26-04-2016 RGE_RS02765 a91be00d18ba14d1303774eabcc2ddb4 420 PANTHER PTHR10859:SF92 43 404 6.0E-92 T 26-04-2016 RGE_RS02765 a91be00d18ba14d1303774eabcc2ddb4 420 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 18 413 3.8E-128 T 26-04-2016 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0042710 KEGG: 00051+2.4.1.-|KEGG: 00512+2.4.1.-|KEGG: 00513+2.4.1.-|KEGG: 00514+2.4.1.-|KEGG: 00522+2.4.1.-|KEGG: 00533+2.4.1.-|KEGG: 00540+2.4.1.-|KEGG: 00550+2.4.1.-|KEGG: 00561+2.4.1.-|KEGG: 00563+2.4.1.-|KEGG: 00600+2.4.1.-|KEGG: 00601+2.4.1.-|KEGG: 00603+2.4.1.-|KEGG: 00604+2.4.1.-|KEGG: 00906+2.4.1.-|KEGG: 00908+2.4.1.-|KEGG: 00941+2.4.1.-|KEGG: 00942+2.4.1.-|KEGG: 00944+2.4.1.-|KEGG: 00945+2.4.1.-|KEGG: 00965+2.4.1.- RGE_RS08610 9dc5a7b6457d1b5397d9fc002c6c4291 751 PANTHER PTHR30191:SF0 11 751 0.0 T 26-04-2016 RGE_RS08610 9dc5a7b6457d1b5397d9fc002c6c4291 751 ProSitePatterns PS00850 Glycine radical domain signature. 721 729 - T 26-04-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site RGE_RS08610 9dc5a7b6457d1b5397d9fc002c6c4291 751 Pfam PF01228 Glycine radical 626 732 1.6E-43 T 26-04-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 RGE_RS08610 9dc5a7b6457d1b5397d9fc002c6c4291 751 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 13 749 0.0 T 26-04-2016 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493|UniPathway: UPA00920 RGE_RS08610 9dc5a7b6457d1b5397d9fc002c6c4291 751 PIRSF PIRSF000379 10 751 0.0 T 26-04-2016 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493|UniPathway: UPA00920 RGE_RS08610 9dc5a7b6457d1b5397d9fc002c6c4291 751 Pfam PF02901 Pyruvate formate lyase-like 28 610 9.3E-197 T 26-04-2016 IPR004184 Pyruvate formate lyase domain GO:0003824 RGE_RS08610 9dc5a7b6457d1b5397d9fc002c6c4291 751 SUPERFAMILY SSF51998 10 749 7.94E-274 T 26-04-2016 RGE_RS08610 9dc5a7b6457d1b5397d9fc002c6c4291 751 PANTHER PTHR30191 11 751 0.0 T 26-04-2016 RGE_RS08610 9dc5a7b6457d1b5397d9fc002c6c4291 751 Gene3D G3DSA:3.20.70.20 11 748 2.3E-298 T 26-04-2016 RGE_RS12420 f0927392f6332c0a4430dd7fb6484916 249 PANTHER PTHR24220 3 242 5.5E-146 T 26-04-2016 RGE_RS12420 f0927392f6332c0a4430dd7fb6484916 249 Gene3D G3DSA:3.40.50.300 1 236 4.1E-81 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12420 f0927392f6332c0a4430dd7fb6484916 249 PANTHER PTHR24220:SF447 3 242 5.5E-146 T 26-04-2016 RGE_RS12420 f0927392f6332c0a4430dd7fb6484916 249 SUPERFAMILY SSF52540 1 235 2.1E-78 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12420 f0927392f6332c0a4430dd7fb6484916 249 SMART SM00382 26 213 1.6E-17 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS12420 f0927392f6332c0a4430dd7fb6484916 249 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS12420 f0927392f6332c0a4430dd7fb6484916 249 PIRSF PIRSF039085 1 241 2.3E-105 T 26-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RGE_RS12420 f0927392f6332c0a4430dd7fb6484916 249 Pfam PF00005 ABC transporter 19 165 9.1E-35 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS10185 0002423cc9e6dac8aa3976ff52102631 280 SMART SM00382 42 231 3.3E-17 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS10185 0002423cc9e6dac8aa3976ff52102631 280 PANTHER PTHR24220 14 235 3.8E-110 T 26-04-2016 RGE_RS10185 0002423cc9e6dac8aa3976ff52102631 280 SUPERFAMILY SSF52540 12 240 3.9E-74 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10185 0002423cc9e6dac8aa3976ff52102631 280 PANTHER PTHR24220:SF186 14 235 3.8E-110 T 26-04-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 RGE_RS10185 0002423cc9e6dac8aa3976ff52102631 280 Pfam PF00005 ABC transporter 34 182 8.4E-36 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS10185 0002423cc9e6dac8aa3976ff52102631 280 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS10185 0002423cc9e6dac8aa3976ff52102631 280 Gene3D G3DSA:3.40.50.300 11 238 9.0E-78 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01780 4ba64c01d0b83b9aa0cc1ec9cc08c452 471 PANTHER PTHR30489 7 60 2.2E-31 T 26-04-2016 RGE_RS01780 4ba64c01d0b83b9aa0cc1ec9cc08c452 471 PANTHER PTHR30489 132 471 2.2E-31 T 26-04-2016 RGE_RS01780 4ba64c01d0b83b9aa0cc1ec9cc08c452 471 Pfam PF02687 FtsX-like permease family 338 463 7.8E-15 T 26-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RGE_RS05395 0f5b8199eeedfb2015e8353f6e1d5c4d 336 PANTHER PTHR30465 192 335 1.2E-134 T 26-04-2016 RGE_RS05395 0f5b8199eeedfb2015e8353f6e1d5c4d 336 PANTHER PTHR30465 1 169 1.2E-134 T 26-04-2016 RGE_RS05395 0f5b8199eeedfb2015e8353f6e1d5c4d 336 PANTHER PTHR30465:SF0 192 335 1.2E-134 T 26-04-2016 RGE_RS05395 0f5b8199eeedfb2015e8353f6e1d5c4d 336 PANTHER PTHR30465:SF0 1 169 1.2E-134 T 26-04-2016 RGE_RS05395 0f5b8199eeedfb2015e8353f6e1d5c4d 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 334 6.8E-47 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05395 0f5b8199eeedfb2015e8353f6e1d5c4d 336 Gene3D G3DSA:1.10.3720.10 201 326 2.8E-20 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05395 0f5b8199eeedfb2015e8353f6e1d5c4d 336 Gene3D G3DSA:1.10.3720.10 90 163 2.8E-20 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05395 0f5b8199eeedfb2015e8353f6e1d5c4d 336 SUPERFAMILY SSF161098 198 317 1.23E-17 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05395 0f5b8199eeedfb2015e8353f6e1d5c4d 336 SUPERFAMILY SSF161098 93 160 1.23E-17 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 Pfam PF00271 Helicase conserved C-terminal domain 956 1066 5.4E-12 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 SUPERFAMILY SSF52540 600 846 6.8E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 SUPERFAMILY SSF52980 1150 1263 1.66E-14 T 26-04-2016 IPR011335 Restriction endonuclease type II-like RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 Gene3D G3DSA:3.40.50.300 604 799 5.3E-20 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 Gene3D G3DSA:3.40.1350.10 1143 1265 6.7E-22 T 26-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 PANTHER PTHR10799:SF734 597 858 8.0E-135 T 26-04-2016 RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 PANTHER PTHR10799:SF734 878 1106 8.0E-135 T 26-04-2016 RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 SUPERFAMILY SSF52540 749 803 3.4E-41 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 Pfam PF04471 Restriction endonuclease 1147 1263 1.8E-23 T 26-04-2016 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 SMART SM00490 984 1066 4.0E-11 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 Pfam PF00176 SNF2 family N-terminal domain 575 859 1.9E-42 T 26-04-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 PANTHER PTHR10799 597 858 8.0E-135 T 26-04-2016 RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 PANTHER PTHR10799 878 1106 8.0E-135 T 26-04-2016 RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 SUPERFAMILY SSF52540 945 1110 3.4E-41 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 Gene3D G3DSA:3.40.50.300 951 1077 1.4E-15 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08830 03dafe40b55a2a9316c23e54b595ed41 1287 SMART SM00487 602 813 4.6E-26 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS19800 552bb676c137537a9f36e5df22efedd8 95 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 28 90 1.3E-15 T 26-04-2016 IPR008792 Coenzyme PQQ synthesis D UniPathway: UPA00539 RGE_RS19800 552bb676c137537a9f36e5df22efedd8 95 Hamap MF_00655 Coenzyme PQQ synthesis protein D [pqqD]. 6 92 22.695 T 26-04-2016 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 UniPathway: UPA00539 RGE_RS19800 552bb676c137537a9f36e5df22efedd8 95 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 12 90 2.2E-34 T 26-04-2016 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 UniPathway: UPA00539 RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 Gene3D G3DSA:3.40.50.970 604 806 1.7E-21 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 11 941 0.0 T 26-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 SUPERFAMILY SSF52518 581 801 7.49E-48 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 SUPERFAMILY SSF52518 123 549 4.71E-85 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 Gene3D G3DSA:3.40.50.970 165 522 1.5E-67 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 PANTHER PTHR23152:SF4 1 951 0.0 T 26-04-2016 RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 Pfam PF00676 Dehydrogenase E1 component 217 520 1.3E-43 T 26-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 SMART SM00861 598 795 4.3E-60 T 26-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 9 46 5.0E-18 T 26-04-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 PANTHER PTHR23152 1 951 0.0 T 26-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 PIRSF PIRSF000157 1 944 0.0 T 26-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 Pfam PF02779 Transketolase, pyrimidine binding domain 598 794 1.1E-62 T 26-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RGE_RS13500 4125e16c2d3edc8ed57fe6c0654c637b 952 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 800 941 1.0E-50 T 26-04-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RGE_RS05365 58f4b8bdc3558e55b64315ad512a36e8 430 PANTHER PTHR37957 5 427 1.4E-67 T 26-04-2016 RGE_RS05365 58f4b8bdc3558e55b64315ad512a36e8 430 Pfam PF13449 Esterase-like activity of phytase 61 396 2.8E-63 T 26-04-2016 IPR027372 Phytase-like domain RGE_RS05365 58f4b8bdc3558e55b64315ad512a36e8 430 Gene3D G3DSA:2.130.10.10 232 373 8.0E-4 T 26-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RGE_RS05365 58f4b8bdc3558e55b64315ad512a36e8 430 SUPERFAMILY SSF63829 172 338 9.81E-6 T 26-04-2016 RGE_RS11775 4ccb6d6b1ce2d0d25aec9f7d71e1d49b 227 PANTHER PTHR24220 7 223 5.9E-99 T 26-04-2016 RGE_RS11775 4ccb6d6b1ce2d0d25aec9f7d71e1d49b 227 Pfam PF00005 ABC transporter 25 171 1.1E-32 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS11775 4ccb6d6b1ce2d0d25aec9f7d71e1d49b 227 SMART SM00382 34 222 2.7E-14 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11775 4ccb6d6b1ce2d0d25aec9f7d71e1d49b 227 SUPERFAMILY SSF52540 5 224 5.06E-66 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11775 4ccb6d6b1ce2d0d25aec9f7d71e1d49b 227 Gene3D G3DSA:3.40.50.300 4 224 1.5E-66 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11775 4ccb6d6b1ce2d0d25aec9f7d71e1d49b 227 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS11775 4ccb6d6b1ce2d0d25aec9f7d71e1d49b 227 PANTHER PTHR24220:SF509 7 223 5.9E-99 T 26-04-2016 RGE_RS13365 c39418a19f74fbfa3439bb6d71b3ede2 297 TIGRFAM TIGR01932 hflC: HflC protein 143 284 2.2E-46 T 26-04-2016 IPR010200 HflC GO:0016021|GO:0052547 RGE_RS13365 c39418a19f74fbfa3439bb6d71b3ede2 297 SUPERFAMILY SSF117892 54 190 5.49E-25 T 26-04-2016 IPR001107 Band 7 domain RGE_RS13365 c39418a19f74fbfa3439bb6d71b3ede2 297 SMART SM00244 20 185 8.4E-23 T 26-04-2016 IPR001107 Band 7 domain RGE_RS13365 c39418a19f74fbfa3439bb6d71b3ede2 297 PANTHER PTHR10264 3 287 1.3E-71 T 26-04-2016 IPR001972 Stomatin family GO:0016020 RGE_RS13365 c39418a19f74fbfa3439bb6d71b3ede2 297 PANTHER PTHR10264:SF80 3 287 1.3E-71 T 26-04-2016 RGE_RS13365 c39418a19f74fbfa3439bb6d71b3ede2 297 PIRSF PIRSF005651 1 291 8.3E-85 T 26-04-2016 IPR010200 HflC GO:0016021|GO:0052547 RGE_RS13365 c39418a19f74fbfa3439bb6d71b3ede2 297 Pfam PF01145 SPFH domain / Band 7 family 24 200 5.9E-29 T 26-04-2016 IPR001107 Band 7 domain RGE_RS03950 ea1c9aa1f2ac188d22527a2705942b40 360 Pfam PF02277 Phosphoribosyltransferase 11 340 3.6E-77 T 26-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RGE_RS03950 ea1c9aa1f2ac188d22527a2705942b40 360 Gene3D G3DSA:3.40.50.10210 64 324 9.7E-61 T 26-04-2016 RGE_RS03950 ea1c9aa1f2ac188d22527a2705942b40 360 PANTHER PTHR21712 8 340 1.2E-46 T 26-04-2016 RGE_RS03950 ea1c9aa1f2ac188d22527a2705942b40 360 Gene3D G3DSA:1.10.1610.10 13 63 5.3E-14 T 26-04-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RGE_RS03950 ea1c9aa1f2ac188d22527a2705942b40 360 SUPERFAMILY SSF52733 17 342 1.7E-67 T 26-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RGE_RS03950 ea1c9aa1f2ac188d22527a2705942b40 360 PANTHER PTHR21712:SF4 8 340 1.2E-46 T 26-04-2016 RGE_RS00520 d3ea3de798edc40b7c85204a205bf5e8 255 Pfam PF00149 Calcineurin-like phosphoesterase 22 218 4.4E-7 T 26-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RGE_RS00520 d3ea3de798edc40b7c85204a205bf5e8 255 SUPERFAMILY SSF56300 151 223 1.57E-22 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS00520 d3ea3de798edc40b7c85204a205bf5e8 255 SUPERFAMILY SSF56300 1 111 1.57E-22 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS00520 d3ea3de798edc40b7c85204a205bf5e8 255 PANTHER PTHR37844 1 232 5.9E-17 T 26-04-2016 RGE_RS00520 d3ea3de798edc40b7c85204a205bf5e8 255 Gene3D G3DSA:3.60.21.10 1 96 9.6E-12 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS00520 d3ea3de798edc40b7c85204a205bf5e8 255 Gene3D G3DSA:3.60.21.10 172 231 9.6E-12 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS01460 a78af1e36ed1ea96f8470b5edb0dbe43 257 PANTHER PTHR24220:SF400 8 254 2.1E-119 T 26-04-2016 RGE_RS01460 a78af1e36ed1ea96f8470b5edb0dbe43 257 PANTHER PTHR24220 8 254 2.1E-119 T 26-04-2016 RGE_RS01460 a78af1e36ed1ea96f8470b5edb0dbe43 257 SUPERFAMILY SSF52540 5 247 1.25E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01460 a78af1e36ed1ea96f8470b5edb0dbe43 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 247 2.7E-8 T 26-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RGE_RS01460 a78af1e36ed1ea96f8470b5edb0dbe43 257 Gene3D G3DSA:3.40.50.300 4 245 1.7E-65 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01460 a78af1e36ed1ea96f8470b5edb0dbe43 257 SMART SM00382 31 225 8.9E-7 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS01460 a78af1e36ed1ea96f8470b5edb0dbe43 257 Pfam PF00005 ABC transporter 23 178 2.4E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS13745 a3a6cd583a32d8c0b88b91f4c866365f 283 SUPERFAMILY SSF103481 179 277 3.53E-6 T 26-04-2016 RGE_RS13745 a3a6cd583a32d8c0b88b91f4c866365f 283 Pfam PF00892 EamA-like transporter family 142 270 1.1E-7 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS13745 a3a6cd583a32d8c0b88b91f4c866365f 283 Pfam PF00892 EamA-like transporter family 1 129 5.8E-12 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS13745 a3a6cd583a32d8c0b88b91f4c866365f 283 PANTHER PTHR22911 1 280 4.9E-25 T 26-04-2016 RGE_RS13745 a3a6cd583a32d8c0b88b91f4c866365f 283 SUPERFAMILY SSF103481 29 131 4.05E-11 T 26-04-2016 RGE_RS15040 1a03a8c07dbbd4f922d65c91b07b266e 139 Pfam PF01989 Protein of unknown function DUF126 27 105 3.0E-20 T 26-04-2016 IPR002840 Domain of unknown function DUF126 RGE_RS15040 1a03a8c07dbbd4f922d65c91b07b266e 139 Gene3D G3DSA:3.50.30.10 5 135 5.0E-27 T 26-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RGE_RS15040 1a03a8c07dbbd4f922d65c91b07b266e 139 SUPERFAMILY SSF52016 5 134 7.85E-30 T 26-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RGE_RS15580 044095ef1fd86ac4783af62dd3dea962 65 Pfam PF03966 Trm112p-like protein 4 47 3.1E-9 T 26-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 RGE_RS15580 044095ef1fd86ac4783af62dd3dea962 65 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 3 60 24.316 T 26-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 RGE_RS15580 044095ef1fd86ac4783af62dd3dea962 65 SUPERFAMILY SSF158997 1 60 6.28E-18 T 26-04-2016 RGE_RS15580 044095ef1fd86ac4783af62dd3dea962 65 Gene3D G3DSA:2.20.25.10 10 60 1.3E-22 T 26-04-2016 RGE_RS15580 044095ef1fd86ac4783af62dd3dea962 65 PANTHER PTHR33505 1 60 1.1E-17 T 26-04-2016 RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 Pfam PF01804 Penicillin amidase 38 916 4.9E-162 T 26-04-2016 IPR002692 Penicillin/cephalosporin acylase GO:0016787|GO:0017000 RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 Gene3D G3DSA:3.60.20.10 443 719 3.4E-73 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 Gene3D G3DSA:3.60.20.10 273 352 3.4E-73 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 Gene3D G3DSA:1.10.439.10 28 186 5.8E-48 T 26-04-2016 IPR023343 Penicillin amidase type, domain1 GO:0016811 RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 PANTHER PTHR34218:SF2 520 640 4.1E-112 T 26-04-2016 RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 PANTHER PTHR34218:SF2 34 385 4.1E-112 T 26-04-2016 RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 PANTHER PTHR34218:SF2 402 499 4.1E-112 T 26-04-2016 RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 PANTHER PTHR34218:SF2 677 927 4.1E-112 T 26-04-2016 RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 PIRSF PIRSF001227 8 927 1.6E-119 T 26-04-2016 IPR014395 Penicillin acylase GO:0016811 RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 PANTHER PTHR34218 520 640 4.1E-112 T 26-04-2016 RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 PANTHER PTHR34218 34 385 4.1E-112 T 26-04-2016 RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 PANTHER PTHR34218 402 499 4.1E-112 T 26-04-2016 RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 PANTHER PTHR34218 677 927 4.1E-112 T 26-04-2016 RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 SUPERFAMILY SSF56235 34 224 2.52E-141 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS15245 6765e709c89cd9877b66db692d649c6d 929 SUPERFAMILY SSF56235 265 927 2.52E-141 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS00100 94f92b0dd06499319cd47f2b497b5ea8 513 SUPERFAMILY SSF48173 230 497 7.72E-53 T 26-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain RGE_RS00100 94f92b0dd06499319cd47f2b497b5ea8 513 Gene3D G3DSA:1.25.40.80 229 313 1.3E-11 T 26-04-2016 RGE_RS00100 94f92b0dd06499319cd47f2b497b5ea8 513 Pfam PF04244 Deoxyribodipyrimidine photo-lyase-related protein 5 229 5.0E-75 T 26-04-2016 IPR007357 Deoxyribodipyrimidine photolyase-related protein RGE_RS00100 94f92b0dd06499319cd47f2b497b5ea8 513 Gene3D G3DSA:1.10.579.10 314 400 4.7E-5 T 26-04-2016 RGE_RS00100 94f92b0dd06499319cd47f2b497b5ea8 513 PANTHER PTHR38657:SF1 1 513 3.0E-204 T 26-04-2016 RGE_RS00100 94f92b0dd06499319cd47f2b497b5ea8 513 PANTHER PTHR38657 1 513 3.0E-204 T 26-04-2016 RGE_RS01355 a50715667cd4495594682217be7cacca 196 SUPERFAMILY SSF101874 34 190 8.24E-38 T 26-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RGE_RS01355 a50715667cd4495594682217be7cacca 196 PANTHER PTHR34406 5 188 1.8E-22 T 26-04-2016 RGE_RS01355 a50715667cd4495594682217be7cacca 196 Gene3D G3DSA:2.40.128.110 34 190 4.2E-38 T 26-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RGE_RS01355 a50715667cd4495594682217be7cacca 196 SMART SM00867 31 191 2.1E-42 T 26-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RGE_RS01355 a50715667cd4495594682217be7cacca 196 PANTHER PTHR34406:SF1 5 188 1.8E-22 T 26-04-2016 RGE_RS01355 a50715667cd4495594682217be7cacca 196 Pfam PF04264 YceI-like domain 34 188 2.6E-29 T 26-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RGE_RS18650 e2b7818f0ab4398c6ea09e804dcfc11f 494 PANTHER PTHR30203 47 481 5.9E-21 T 26-04-2016 RGE_RS18650 e2b7818f0ab4398c6ea09e804dcfc11f 494 Pfam PF02321 Outer membrane efflux protein 281 460 3.0E-14 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS18650 e2b7818f0ab4398c6ea09e804dcfc11f 494 Pfam PF02321 Outer membrane efflux protein 54 254 1.8E-19 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS18650 e2b7818f0ab4398c6ea09e804dcfc11f 494 Gene3D G3DSA:1.20.1600.10 339 477 2.4E-8 T 26-04-2016 RGE_RS18650 e2b7818f0ab4398c6ea09e804dcfc11f 494 Gene3D G3DSA:1.20.1600.10 48 330 2.3E-31 T 26-04-2016 RGE_RS18650 e2b7818f0ab4398c6ea09e804dcfc11f 494 SUPERFAMILY SSF56954 4 465 2.09E-54 T 26-04-2016 RGE_RS01180 b6cc551c8fcc59e9741e636e7d209b62 323 PANTHER PTHR12715:SF9 11 294 4.8E-57 T 26-04-2016 RGE_RS01180 b6cc551c8fcc59e9741e636e7d209b62 323 SUPERFAMILY SSF103481 193 289 4.18E-9 T 26-04-2016 RGE_RS01180 b6cc551c8fcc59e9741e636e7d209b62 323 Pfam PF00892 EamA-like transporter family 163 284 1.2E-14 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS01180 b6cc551c8fcc59e9741e636e7d209b62 323 Pfam PF00892 EamA-like transporter family 12 143 2.1E-9 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS01180 b6cc551c8fcc59e9741e636e7d209b62 323 SUPERFAMILY SSF103481 52 148 1.05E-7 T 26-04-2016 RGE_RS01180 b6cc551c8fcc59e9741e636e7d209b62 323 PANTHER PTHR12715 11 294 4.8E-57 T 26-04-2016 RGE_RS10345 e11946bca923e1c50452a9461b5794df 925 Gene3D G3DSA:2.40.170.20 634 730 2.2E-4 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS10345 e11946bca923e1c50452a9461b5794df 925 Gene3D G3DSA:2.40.170.20 783 869 2.2E-4 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS10345 e11946bca923e1c50452a9461b5794df 925 Pfam PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB 105 922 2.6E-96 T 26-04-2016 IPR020016 Decahaem-associated outer membrane protein, MtrB/PioB RGE_RS17465 dce113462882278ee0dbb1f14c5417c5 114 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 72 3.0E-18 T 26-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RGE_RS17465 dce113462882278ee0dbb1f14c5417c5 114 SUPERFAMILY SSF159127 1 75 6.54E-17 T 26-04-2016 RGE_RS17465 dce113462882278ee0dbb1f14c5417c5 114 PANTHER PTHR35177 1 74 1.3E-12 T 26-04-2016 RGE_RS17465 dce113462882278ee0dbb1f14c5417c5 114 PANTHER PTHR35177:SF2 1 74 1.3E-12 T 26-04-2016 RGE_RS17465 dce113462882278ee0dbb1f14c5417c5 114 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 1.0E-13 T 26-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RGE_RS17465 dce113462882278ee0dbb1f14c5417c5 114 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 59 71 1.0E-13 T 26-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RGE_RS17465 dce113462882278ee0dbb1f14c5417c5 114 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 17 33 1.0E-13 T 26-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RGE_RS17465 dce113462882278ee0dbb1f14c5417c5 114 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 38 54 1.0E-13 T 26-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RGE_RS17465 dce113462882278ee0dbb1f14c5417c5 114 Pfam PF01455 HupF/HypC family 1 63 1.0E-17 T 26-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RGE_RS06650 e8567544167c0a5ca4b16f2619575142 186 Gene3D G3DSA:3.30.420.10 9 183 3.0E-69 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS06650 e8567544167c0a5ca4b16f2619575142 186 Hamap MF_00045 Oligoribonuclease [orn]. 8 186 42.553 T 26-04-2016 IPR022894 Oligoribonuclease GO:0016788 RGE_RS06650 e8567544167c0a5ca4b16f2619575142 186 SUPERFAMILY SSF53098 9 184 6.17E-47 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS06650 e8567544167c0a5ca4b16f2619575142 186 PANTHER PTHR11046:SF1 10 184 7.4E-106 T 26-04-2016 RGE_RS06650 e8567544167c0a5ca4b16f2619575142 186 PANTHER PTHR11046 10 184 7.4E-106 T 26-04-2016 RGE_RS06650 e8567544167c0a5ca4b16f2619575142 186 SMART SM00479 12 185 1.0E-22 T 26-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RGE_RS06650 e8567544167c0a5ca4b16f2619575142 186 Pfam PF00929 Exonuclease 14 175 2.6E-34 T 26-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RGE_RS09535 28e3a7f83a2baf7deed936df61112684 259 PANTHER PTHR30065:SF1 1 251 3.0E-51 T 26-04-2016 RGE_RS09535 28e3a7f83a2baf7deed936df61112684 259 Pfam PF01311 Bacterial export proteins, family 1 14 245 1.1E-50 T 26-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RGE_RS09535 28e3a7f83a2baf7deed936df61112684 259 PANTHER PTHR30065 1 251 3.0E-51 T 26-04-2016 RGE_RS09535 28e3a7f83a2baf7deed936df61112684 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 179 201 9.6E-18 T 26-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RGE_RS09535 28e3a7f83a2baf7deed936df61112684 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 201 220 9.6E-18 T 26-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RGE_RS09535 28e3a7f83a2baf7deed936df61112684 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 9.6E-18 T 26-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RGE_RS09535 28e3a7f83a2baf7deed936df61112684 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 9.6E-18 T 26-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RGE_RS11870 7fb674a1128fc611cdb5d070a020ea7b 400 PANTHER PTHR13789:SF5 8 392 8.1E-74 T 26-04-2016 RGE_RS11870 7fb674a1128fc611cdb5d070a020ea7b 400 Pfam PF01494 FAD binding domain 7 341 4.3E-23 T 26-04-2016 IPR002938 FAD-binding domain GO:0071949 RGE_RS11870 7fb674a1128fc611cdb5d070a020ea7b 400 Gene3D G3DSA:3.50.50.60 270 359 2.5E-42 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11870 7fb674a1128fc611cdb5d070a020ea7b 400 Gene3D G3DSA:3.50.50.60 7 184 2.5E-42 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11870 7fb674a1128fc611cdb5d070a020ea7b 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 2.5E-13 T 26-04-2016 RGE_RS11870 7fb674a1128fc611cdb5d070a020ea7b 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 2.5E-13 T 26-04-2016 RGE_RS11870 7fb674a1128fc611cdb5d070a020ea7b 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 158 173 2.5E-13 T 26-04-2016 RGE_RS11870 7fb674a1128fc611cdb5d070a020ea7b 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 2.5E-13 T 26-04-2016 RGE_RS11870 7fb674a1128fc611cdb5d070a020ea7b 400 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 8 392 1.5E-109 T 26-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 RGE_RS11870 7fb674a1128fc611cdb5d070a020ea7b 400 PANTHER PTHR13789 8 392 8.1E-74 T 26-04-2016 RGE_RS11870 7fb674a1128fc611cdb5d070a020ea7b 400 SUPERFAMILY SSF51905 269 386 3.41E-58 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS11870 7fb674a1128fc611cdb5d070a020ea7b 400 SUPERFAMILY SSF51905 7 179 3.41E-58 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09195 ac45b0254a00704039685610c82a4a54 441 PANTHER PTHR21343 1 435 1.7E-124 T 26-04-2016 RGE_RS09195 ac45b0254a00704039685610c82a4a54 441 SUPERFAMILY SSF52317 244 436 1.94E-23 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS09195 ac45b0254a00704039685610c82a4a54 441 PANTHER PTHR21343:SF6 1 435 1.7E-124 T 26-04-2016 RGE_RS09195 ac45b0254a00704039685610c82a4a54 441 Gene3D G3DSA:3.40.50.300 4 198 2.2E-22 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09195 ac45b0254a00704039685610c82a4a54 441 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 3 441 38.777 T 26-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 RGE_RS09195 ac45b0254a00704039685610c82a4a54 441 SUPERFAMILY SSF52540 1 198 1.8E-40 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09195 ac45b0254a00704039685610c82a4a54 441 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 7 406 8.0E-88 T 26-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 RGE_RS09195 ac45b0254a00704039685610c82a4a54 441 Gene3D G3DSA:3.40.50.880 247 435 2.5E-16 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS09195 ac45b0254a00704039685610c82a4a54 441 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 245 436 5.5E-30 T 26-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 RGE_RS09195 ac45b0254a00704039685610c82a4a54 441 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 7 194 8.3E-17 T 26-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RGE_RS08620 c7acfd828fe144faf039b2af31e87a9d 467 PANTHER PTHR13078 14 138 7.4E-32 T 26-04-2016 RGE_RS08620 c7acfd828fe144faf039b2af31e87a9d 467 Gene3D G3DSA:3.10.129.10 14 144 1.5E-41 T 26-04-2016 IPR029069 HotDog domain RGE_RS08620 c7acfd828fe144faf039b2af31e87a9d 467 SUPERFAMILY SSF54637 11 146 7.48E-37 T 26-04-2016 IPR029069 HotDog domain RGE_RS08620 c7acfd828fe144faf039b2af31e87a9d 467 Pfam PF01575 MaoC like domain 24 121 3.1E-19 T 26-04-2016 IPR002539 MaoC-like domain RGE_RS08620 c7acfd828fe144faf039b2af31e87a9d 467 Gene3D G3DSA:3.40.50.10750 277 433 6.1E-51 T 26-04-2016 RGE_RS08620 c7acfd828fe144faf039b2af31e87a9d 467 SUPERFAMILY SSF53659 172 460 1.23E-70 T 26-04-2016 RGE_RS08620 c7acfd828fe144faf039b2af31e87a9d 467 Pfam PF01515 Phosphate acetyl/butaryl transferase 239 457 9.3E-47 T 26-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RGE_RS21885 673d10b37013cc4e19894671ed1dd2f1 327 Pfam PF00248 Aldo/keto reductase family 16 320 1.0E-73 T 26-04-2016 IPR023210 NADP-dependent oxidoreductase domain RGE_RS21885 673d10b37013cc4e19894671ed1dd2f1 327 Gene3D G3DSA:3.20.20.100 1 321 1.6E-103 T 26-04-2016 IPR023210 NADP-dependent oxidoreductase domain RGE_RS21885 673d10b37013cc4e19894671ed1dd2f1 327 SUPERFAMILY SSF51430 1 321 8.9E-96 T 26-04-2016 IPR023210 NADP-dependent oxidoreductase domain RGE_RS21885 673d10b37013cc4e19894671ed1dd2f1 327 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 115 125 7.7E-10 T 26-04-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related RGE_RS21885 673d10b37013cc4e19894671ed1dd2f1 327 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 211 217 7.7E-10 T 26-04-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related RGE_RS21885 673d10b37013cc4e19894671ed1dd2f1 327 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 275 288 7.7E-10 T 26-04-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related RGE_RS21885 673d10b37013cc4e19894671ed1dd2f1 327 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 262 274 7.7E-10 T 26-04-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related RGE_RS21885 673d10b37013cc4e19894671ed1dd2f1 327 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 166 185 7.7E-10 T 26-04-2016 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related RGE_RS21885 673d10b37013cc4e19894671ed1dd2f1 327 PANTHER PTHR11732 1 320 4.6E-137 T 26-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RGE_RS12160 60dc7f86b34889d4c17cb3c451883d3b 123 SMART SM00448 6 116 7.7E-7 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS12160 60dc7f86b34889d4c17cb3c451883d3b 123 SUPERFAMILY SSF52172 6 120 1.57E-17 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS12160 60dc7f86b34889d4c17cb3c451883d3b 123 Pfam PF00072 Response regulator receiver domain 8 89 6.5E-9 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS12160 60dc7f86b34889d4c17cb3c451883d3b 123 Gene3D G3DSA:3.40.50.2300 3 120 3.1E-15 T 26-04-2016 RGE_RS20800 ff4bf69df491abf520b5d179863028d4 251 SUPERFAMILY SSF160950 2 250 8.37E-82 T 26-04-2016 RGE_RS20800 ff4bf69df491abf520b5d179863028d4 251 Gene3D G3DSA:1.10.3900.10 10 171 7.0E-63 T 26-04-2016 RGE_RS20800 ff4bf69df491abf520b5d179863028d4 251 Gene3D G3DSA:2.60.440.10 172 250 5.9E-17 T 26-04-2016 IPR027462 Z ring-associated protein D, C-terminal domain RGE_RS20800 ff4bf69df491abf520b5d179863028d4 251 PANTHER PTHR39455 2 251 2.3E-55 T 26-04-2016 RGE_RS20800 ff4bf69df491abf520b5d179863028d4 251 Hamap MF_01092 Cell division protein ZapD [zapD]. 1 250 32.142 T 26-04-2016 IPR009777 Cell division protein ZapD RGE_RS20800 ff4bf69df491abf520b5d179863028d4 251 PANTHER PTHR39455:SF1 2 251 2.3E-55 T 26-04-2016 RGE_RS20800 ff4bf69df491abf520b5d179863028d4 251 Pfam PF07072 Protein of unknown function (DUF1342) 16 226 1.1E-78 T 26-04-2016 IPR009777 Cell division protein ZapD RGE_RS04905 17f69a45c664890d2ebf3e0eec0c3288 339 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 167 1.4E-8 T 26-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RGE_RS04905 17f69a45c664890d2ebf3e0eec0c3288 339 Gene3D G3DSA:3.40.50.720 6 311 5.4E-22 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04905 17f69a45c664890d2ebf3e0eec0c3288 339 SUPERFAMILY SSF51735 6 314 1.72E-36 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06285 3bc3b92a4695f3fb081dcc37aa6117d8 178 Pfam PF04463 Protein of unknown function (DUF523) 6 152 6.2E-37 T 26-04-2016 IPR007553 Domain of unknown function DUF523 RGE_RS06285 3bc3b92a4695f3fb081dcc37aa6117d8 178 PANTHER PTHR30087:SF1 5 165 4.1E-44 T 26-04-2016 RGE_RS06285 3bc3b92a4695f3fb081dcc37aa6117d8 178 PANTHER PTHR30087 5 165 4.1E-44 T 26-04-2016 RGE_RS04955 cacca462f10de30354fa2bd6980f5e3e 239 SUPERFAMILY SSF53474 21 235 1.09E-42 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS04955 cacca462f10de30354fa2bd6980f5e3e 239 PANTHER PTHR17630 19 237 3.4E-40 T 26-04-2016 RGE_RS04955 cacca462f10de30354fa2bd6980f5e3e 239 Gene3D G3DSA:3.40.50.1820 21 238 2.2E-48 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS04955 cacca462f10de30354fa2bd6980f5e3e 239 Pfam PF01738 Dienelactone hydrolase family 21 235 2.0E-50 T 26-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 RGE_RS22580 4407f5a20eb5f9552f742a922aa0ea02 96 PANTHER PTHR33677:SF3 6 93 8.9E-18 T 26-04-2016 RGE_RS22580 4407f5a20eb5f9552f742a922aa0ea02 96 Pfam PF02583 Metal-sensitive transcriptional repressor 10 93 2.1E-22 T 26-04-2016 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 RGE_RS22580 4407f5a20eb5f9552f742a922aa0ea02 96 PANTHER PTHR33677 6 93 8.9E-18 T 26-04-2016 RGE_RS17000 7ac4ef75451e4563696b8956aecf61f2 408 SUPERFAMILY SSF52507 7 188 2.22E-54 T 26-04-2016 IPR003382 Flavoprotein GO:0003824 RGE_RS17000 7ac4ef75451e4563696b8956aecf61f2 408 PANTHER PTHR14359:SF20 7 406 8.8E-161 T 26-04-2016 RGE_RS17000 7ac4ef75451e4563696b8956aecf61f2 408 Gene3D G3DSA:3.40.50.1950 5 192 2.8E-59 T 26-04-2016 IPR003382 Flavoprotein GO:0003824 RGE_RS17000 7ac4ef75451e4563696b8956aecf61f2 408 PANTHER PTHR14359 7 406 8.8E-161 T 26-04-2016 RGE_RS17000 7ac4ef75451e4563696b8956aecf61f2 408 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 192 374 2.6E-65 T 26-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 RGE_RS17000 7ac4ef75451e4563696b8956aecf61f2 408 Pfam PF02441 Flavoprotein 11 141 5.6E-33 T 26-04-2016 IPR003382 Flavoprotein GO:0003824 RGE_RS17000 7ac4ef75451e4563696b8956aecf61f2 408 SUPERFAMILY SSF102645 184 404 2.35E-70 T 26-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 RGE_RS17000 7ac4ef75451e4563696b8956aecf61f2 408 Gene3D G3DSA:3.40.50.10300 193 403 4.9E-81 T 26-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 RGE_RS17000 7ac4ef75451e4563696b8956aecf61f2 408 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 9 399 4.7E-122 T 26-04-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 RGE_RS15850 d8d2c9d9ae509197dfdcce99abf7b141 83 SUPERFAMILY SSF54285 1 81 6.17E-20 T 26-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RGE_RS15850 d8d2c9d9ae509197dfdcce99abf7b141 83 Gene3D G3DSA:3.10.20.30 1 83 6.4E-24 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS15850 d8d2c9d9ae509197dfdcce99abf7b141 83 Pfam PF02597 ThiS family 5 83 3.1E-17 T 26-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 RGE_RS15850 d8d2c9d9ae509197dfdcce99abf7b141 83 PANTHER PTHR33359:SF1 1 83 2.6E-19 T 26-04-2016 RGE_RS15850 d8d2c9d9ae509197dfdcce99abf7b141 83 PANTHER PTHR33359 1 83 2.6E-19 T 26-04-2016 RGE_RS08280 f7c6550637a830221fffe8e08f503812 646 Gene3D G3DSA:3.20.20.450 393 634 2.9E-92 T 26-04-2016 IPR001633 EAL domain RGE_RS08280 f7c6550637a830221fffe8e08f503812 646 SMART SM00052 389 632 6.5E-101 T 26-04-2016 IPR001633 EAL domain RGE_RS08280 f7c6550637a830221fffe8e08f503812 646 SUPERFAMILY SSF55073 227 380 1.26E-39 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS08280 f7c6550637a830221fffe8e08f503812 646 PANTHER PTHR10799:SF657 252 489 2.6E-78 T 26-04-2016 RGE_RS08280 f7c6550637a830221fffe8e08f503812 646 SUPERFAMILY SSF141868 396 634 2.75E-86 T 26-04-2016 IPR001633 EAL domain RGE_RS08280 f7c6550637a830221fffe8e08f503812 646 Pfam PF00990 Diguanylate cyclase, GGDEF domain 223 374 1.5E-35 T 26-04-2016 IPR000160 GGDEF domain RGE_RS08280 f7c6550637a830221fffe8e08f503812 646 Pfam PF00563 EAL domain 395 627 1.3E-73 T 26-04-2016 IPR001633 EAL domain RGE_RS08280 f7c6550637a830221fffe8e08f503812 646 PANTHER PTHR10799 252 489 2.6E-78 T 26-04-2016 RGE_RS08280 f7c6550637a830221fffe8e08f503812 646 SMART SM00267 211 379 1.6E-41 T 26-04-2016 IPR000160 GGDEF domain RGE_RS08280 f7c6550637a830221fffe8e08f503812 646 Gene3D G3DSA:3.30.70.270 223 387 5.5E-47 T 26-04-2016 RGE_RS08280 f7c6550637a830221fffe8e08f503812 646 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 222 377 4.5E-30 T 26-04-2016 IPR000160 GGDEF domain RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PANTHER PTHR23504 1 390 2.4E-109 T 26-04-2016 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 Gene3D G3DSA:1.20.1250.20 3 181 8.3E-40 T 26-04-2016 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 Gene3D G3DSA:1.20.1250.20 204 381 4.9E-17 T 26-04-2016 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 ProSitePatterns PS00216 Sugar transport proteins signature 1. 57 73 - T 26-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 SUPERFAMILY SSF103473 3 383 9.55E-64 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PRINTS PR01035 Tetracycline resistance protein signature 39 58 1.2E-107 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PRINTS PR01035 Tetracycline resistance protein signature 270 291 1.2E-107 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PRINTS PR01035 Tetracycline resistance protein signature 10 26 1.2E-107 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PRINTS PR01035 Tetracycline resistance protein signature 330 353 1.2E-107 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PRINTS PR01035 Tetracycline resistance protein signature 295 315 1.2E-107 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PRINTS PR01035 Tetracycline resistance protein signature 97 118 1.2E-107 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PRINTS PR01035 Tetracycline resistance protein signature 213 230 1.2E-107 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PRINTS PR01035 Tetracycline resistance protein signature 242 262 1.2E-107 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PRINTS PR01035 Tetracycline resistance protein signature 127 149 1.2E-107 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PRINTS PR01035 Tetracycline resistance protein signature 70 94 1.2E-107 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PRINTS PR01035 Tetracycline resistance protein signature 360 379 1.2E-107 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PRINTS PR01035 Tetracycline resistance protein signature 155 175 1.2E-107 T 26-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 Pfam PF07690 Major Facilitator Superfamily 4 248 5.7E-36 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS14495 bb1536738db9917d460a9f26b56f11cc 393 PANTHER PTHR23504:SF18 1 390 2.4E-109 T 26-04-2016 RGE_RS07310 dfb78a1ee9ae1f013d5f51634a6852e5 314 SUPERFAMILY SSF56935 19 314 2.08E-63 T 26-04-2016 RGE_RS07310 dfb78a1ee9ae1f013d5f51634a6852e5 314 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 170 182 1.8E-9 T 26-04-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 RGE_RS07310 dfb78a1ee9ae1f013d5f51634a6852e5 314 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 145 156 1.8E-9 T 26-04-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 RGE_RS07310 dfb78a1ee9ae1f013d5f51634a6852e5 314 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 265 282 1.8E-9 T 26-04-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 RGE_RS07310 dfb78a1ee9ae1f013d5f51634a6852e5 314 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 47 58 1.8E-9 T 26-04-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 RGE_RS07310 dfb78a1ee9ae1f013d5f51634a6852e5 314 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 89 99 1.8E-9 T 26-04-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 RGE_RS07310 dfb78a1ee9ae1f013d5f51634a6852e5 314 Gene3D G3DSA:2.40.160.10 19 314 3.1E-68 T 26-04-2016 IPR023614 Porin domain RGE_RS07310 dfb78a1ee9ae1f013d5f51634a6852e5 314 PRINTS PR00184 Neisseria sp. porin signature 87 106 2.5E-12 T 26-04-2016 IPR002299 Porin, Neisseria sp. type GO:0006810|GO:0015288|GO:0016020 RGE_RS07310 dfb78a1ee9ae1f013d5f51634a6852e5 314 PRINTS PR00184 Neisseria sp. porin signature 49 74 2.5E-12 T 26-04-2016 IPR002299 Porin, Neisseria sp. type GO:0006810|GO:0015288|GO:0016020 RGE_RS07310 dfb78a1ee9ae1f013d5f51634a6852e5 314 PRINTS PR00184 Neisseria sp. porin signature 262 286 2.5E-12 T 26-04-2016 IPR002299 Porin, Neisseria sp. type GO:0006810|GO:0015288|GO:0016020 RGE_RS07310 dfb78a1ee9ae1f013d5f51634a6852e5 314 PRINTS PR00184 Neisseria sp. porin signature 144 161 2.5E-12 T 26-04-2016 IPR002299 Porin, Neisseria sp. type GO:0006810|GO:0015288|GO:0016020 RGE_RS07310 dfb78a1ee9ae1f013d5f51634a6852e5 314 Pfam PF13609 Gram-negative porin 7 290 1.2E-54 T 26-04-2016 RGE_RS16090 7e132511c440b37816d48b663b87f7f7 428 Gene3D G3DSA:3.30.565.10 296 361 7.2E-6 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16090 7e132511c440b37816d48b663b87f7f7 428 Pfam PF14501 GHKL domain 328 428 4.7E-14 T 26-04-2016 IPR032834 Sensor histidine kinase NatK, C-terminal domain RGE_RS16090 7e132511c440b37816d48b663b87f7f7 428 SUPERFAMILY SSF55874 295 418 5.11E-6 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 SUPERFAMILY SSF46689 67 112 3.81E-9 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 11 55 - T 26-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 PANTHER PTHR40055:SF1 6 295 2.8E-36 T 26-04-2016 RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 Gene3D G3DSA:1.10.10.60 8 62 3.3E-18 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 SUPERFAMILY SSF55136 145 295 8.5E-31 T 26-04-2016 IPR011256 Regulatory factor, effector binding domain RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 63 106 - T 26-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 SUPERFAMILY SSF46689 10 60 3.27E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 Gene3D G3DSA:1.10.10.60 63 114 2.3E-13 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 Pfam PF12833 Helix-turn-helix domain 32 111 6.2E-20 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 PANTHER PTHR40055 6 295 2.8E-36 T 26-04-2016 RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 SMART SM00871 144 295 2.3E-26 T 26-04-2016 IPR010499 Bacterial transcription activator, effector binding RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 SMART SM00342 26 110 2.0E-22 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 Gene3D G3DSA:3.20.80.10 145 295 3.0E-34 T 26-04-2016 IPR011256 Regulatory factor, effector binding domain RGE_RS06655 6701084e2d7cb908a8f60ab7ef6c2562 297 Pfam PF06445 GyrI-like small molecule binding domain 145 294 9.2E-25 T 26-04-2016 IPR029442 GyrI-like small molecule binding domain RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 Gene3D G3DSA:3.40.50.720 76 319 3.5E-74 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PANTHER PTHR24322:SF105 85 213 5.8E-66 T 26-04-2016 RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PANTHER PTHR24322:SF105 229 261 5.8E-66 T 26-04-2016 RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 216 244 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 219 1.9E-35 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 250 267 1.9E-35 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 284 304 1.9E-35 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 99 1.9E-35 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 168 1.9E-35 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 229 248 1.9E-35 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 229 248 4.3E-10 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 209 217 4.3E-10 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 168 4.3E-10 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 SUPERFAMILY SSF51735 83 319 1.45E-71 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 87 319 8.3E-56 T 26-04-2016 RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PANTHER PTHR24322 85 213 5.8E-66 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12170 166bfd62a1d4cf5db8ecffbd9d24f61a 324 PANTHER PTHR24322 229 261 5.8E-66 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS06885 0e5b4cb2261172c7f5847dbd52510967 285 Pfam PF06629 MltA-interacting protein MipA 53 285 5.5E-31 T 26-04-2016 IPR010583 MltA-interacting MipA RGE_RS06885 0e5b4cb2261172c7f5847dbd52510967 285 SUPERFAMILY SSF56935 87 285 1.14E-7 T 26-04-2016 RGE_RS05645 baf1361bf4b5e659978e1a0fad05fff7 335 Pfam PF13602 Zinc-binding dehydrogenase 192 332 3.9E-19 T 26-04-2016 RGE_RS05645 baf1361bf4b5e659978e1a0fad05fff7 335 PANTHER PTHR11695 19 332 8.0E-115 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS05645 baf1361bf4b5e659978e1a0fad05fff7 335 Gene3D G3DSA:3.40.50.720 157 245 2.3E-14 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05645 baf1361bf4b5e659978e1a0fad05fff7 335 SMART SM00829 14 332 2.1E-9 T 26-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RGE_RS05645 baf1361bf4b5e659978e1a0fad05fff7 335 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 89 2.4E-9 T 26-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RGE_RS05645 baf1361bf4b5e659978e1a0fad05fff7 335 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 335 2.7E-150 T 26-04-2016 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 RGE_RS05645 baf1361bf4b5e659978e1a0fad05fff7 335 SUPERFAMILY SSF50129 1 143 1.42E-35 T 26-04-2016 IPR011032 GroES-like RGE_RS05645 baf1361bf4b5e659978e1a0fad05fff7 335 Gene3D G3DSA:3.90.180.10 1 156 3.5E-38 T 26-04-2016 IPR011032 GroES-like RGE_RS05645 baf1361bf4b5e659978e1a0fad05fff7 335 SUPERFAMILY SSF51735 116 283 2.52E-32 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05645 baf1361bf4b5e659978e1a0fad05fff7 335 PANTHER PTHR11695:SF558 19 332 8.0E-115 T 26-04-2016 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 SMART SM00283 268 515 9.5E-92 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 SUPERFAMILY SSF58104 248 516 2.35E-70 T 26-04-2016 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 514 5.6E-59 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 PANTHER PTHR32089:SF63 179 518 1.1E-134 T 26-04-2016 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 Gene3D G3DSA:1.10.287.950 285 487 1.1E-60 T 26-04-2016 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 443 472 4.9E-56 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 395 424 4.9E-56 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 189 209 4.9E-56 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 366 393 4.9E-56 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 4 29 4.9E-56 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 289 318 4.9E-56 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 PANTHER PTHR32089 179 518 1.1E-134 T 26-04-2016 RGE_RS03450 c34205d454e1dcb128faf0653c95c73f 521 Pfam PF05227 CHASE3 domain 39 179 3.8E-33 T 26-04-2016 IPR007891 CHASE3 RGE_RS01320 52821f8c613241a7254a988ae2418e04 482 SMART SM00387 374 471 2.4E-12 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS01320 52821f8c613241a7254a988ae2418e04 482 SUPERFAMILY SSF55874 344 468 5.63E-19 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS01320 52821f8c613241a7254a988ae2418e04 482 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 378 469 1.8E-6 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS01320 52821f8c613241a7254a988ae2418e04 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 468 9.9E-7 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS01320 52821f8c613241a7254a988ae2418e04 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 425 9.9E-7 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS01320 52821f8c613241a7254a988ae2418e04 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 446 9.9E-7 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS01320 52821f8c613241a7254a988ae2418e04 482 Gene3D G3DSA:3.30.565.10 371 469 6.8E-16 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS01320 52821f8c613241a7254a988ae2418e04 482 PANTHER PTHR34220:SF3 265 475 3.7E-53 T 26-04-2016 RGE_RS01320 52821f8c613241a7254a988ae2418e04 482 PANTHER PTHR34220 265 475 3.7E-53 T 26-04-2016 RGE_RS01320 52821f8c613241a7254a988ae2418e04 482 Pfam PF06580 Histidine kinase 276 359 1.0E-20 T 26-04-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 RGE_RS02385 756928542fba393bbea902cb0dc92ce3 311 PANTHER PTHR11807:SF16 1 273 7.5E-106 T 26-04-2016 RGE_RS02385 756928542fba393bbea902cb0dc92ce3 311 PIRSF PIRSF004976 3 281 2.3E-68 T 26-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 RGE_RS02385 756928542fba393bbea902cb0dc92ce3 311 PANTHER PTHR11807 1 273 7.5E-106 T 26-04-2016 RGE_RS02385 756928542fba393bbea902cb0dc92ce3 311 SUPERFAMILY SSF52402 24 243 1.15E-50 T 26-04-2016 RGE_RS02385 756928542fba393bbea902cb0dc92ce3 311 Pfam PF01171 PP-loop family 49 210 1.2E-14 T 26-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal RGE_RS02385 756928542fba393bbea902cb0dc92ce3 311 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 17 278 54.854 T 26-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 RGE_RS02385 756928542fba393bbea902cb0dc92ce3 311 Gene3D G3DSA:3.40.50.620 31 213 4.7E-18 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS20965 1a672ea0fb5e690108cee93f3feaa12d 134 Pfam PF04891 NifQ 11 121 6.9E-45 T 26-04-2016 IPR006975 NifQ GO:0009399|GO:0030151 RGE_RS20780 9a7f5f1ea5c62ad801cf53c4133fff70 574 PANTHER PTHR30258:SF1 4 574 1.7E-227 T 26-04-2016 RGE_RS20780 9a7f5f1ea5c62ad801cf53c4133fff70 574 Pfam PF00437 Type II/IV secretion system protein 198 464 6.0E-85 T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS20780 9a7f5f1ea5c62ad801cf53c4133fff70 574 SUPERFAMILY SSF160246 12 148 3.4E-28 T 26-04-2016 RGE_RS20780 9a7f5f1ea5c62ad801cf53c4133fff70 574 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 17 573 4.0E-242 T 26-04-2016 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 RGE_RS20780 9a7f5f1ea5c62ad801cf53c4133fff70 574 Gene3D G3DSA:3.40.50.300 305 572 3.9E-93 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20780 9a7f5f1ea5c62ad801cf53c4133fff70 574 SUPERFAMILY SSF52540 172 571 1.24E-97 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20780 9a7f5f1ea5c62ad801cf53c4133fff70 574 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 51 146 1.0E-14 T 26-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 RGE_RS20780 9a7f5f1ea5c62ad801cf53c4133fff70 574 SMART SM00382 325 446 0.0014 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS20780 9a7f5f1ea5c62ad801cf53c4133fff70 574 PANTHER PTHR30258 4 574 1.7E-227 T 26-04-2016 RGE_RS20780 9a7f5f1ea5c62ad801cf53c4133fff70 574 Gene3D G3DSA:3.30.450.90 174 297 1.5E-51 T 26-04-2016 RGE_RS20780 9a7f5f1ea5c62ad801cf53c4133fff70 574 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 392 406 - T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS14035 3aaa326a0389ab8855007da7dd07a495 318 Pfam PF05067 Manganese containing catalase 1 287 3.1E-89 T 26-04-2016 IPR007760 Manganese catalase RGE_RS14035 3aaa326a0389ab8855007da7dd07a495 318 SUPERFAMILY SSF47240 1 255 7.45E-85 T 26-04-2016 IPR009078 Ferritin-like superfamily RGE_RS14035 3aaa326a0389ab8855007da7dd07a495 318 PANTHER PTHR30565:SF3 2 276 6.7E-129 T 26-04-2016 RGE_RS14035 3aaa326a0389ab8855007da7dd07a495 318 PANTHER PTHR30565 2 276 6.7E-129 T 26-04-2016 RGE_RS14035 3aaa326a0389ab8855007da7dd07a495 318 Gene3D G3DSA:1.20.1260.10 1 199 4.6E-76 T 26-04-2016 IPR012347 Ferritin-related RGE_RS00215 1d24f59ac572957fe6df96deeaaeff0c 257 Pfam PF07589 PEP-CTERM motif 229 252 2.8E-7 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS00215 1d24f59ac572957fe6df96deeaaeff0c 257 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 230 253 3.0E-4 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS05405 7821fbd05ee3823bc91a76b597786781 323 PANTHER PTHR24220 5 319 2.2E-156 T 26-04-2016 RGE_RS05405 7821fbd05ee3823bc91a76b597786781 323 SUPERFAMILY SSF52540 34 299 1.14E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05405 7821fbd05ee3823bc91a76b597786781 323 Pfam PF00005 ABC transporter 24 181 1.5E-25 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS05405 7821fbd05ee3823bc91a76b597786781 323 SMART SM00382 32 231 8.0E-12 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS05405 7821fbd05ee3823bc91a76b597786781 323 PANTHER PTHR24220:SF576 5 319 2.2E-156 T 26-04-2016 RGE_RS05405 7821fbd05ee3823bc91a76b597786781 323 Gene3D G3DSA:3.40.50.300 2 254 8.5E-71 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05405 7821fbd05ee3823bc91a76b597786781 323 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 1.5E-18 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS05405 7821fbd05ee3823bc91a76b597786781 323 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS05405 7821fbd05ee3823bc91a76b597786781 323 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 304 3.6E-22 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS14960 2204d3e5144d0dac2cb434e30dae2628 600 PANTHER PTHR21716 6 365 4.2E-44 T 26-04-2016 IPR002549 Transmembrane protein TqsA-like RGE_RS14960 2204d3e5144d0dac2cb434e30dae2628 600 Pfam PF01594 Domain of unknown function DUF20 17 339 1.1E-38 T 26-04-2016 IPR002549 Transmembrane protein TqsA-like RGE_RS10500 ea86da91b86ef0717eec52c61fba740d 254 PANTHER PTHR26402:SF524 4 122 5.8E-42 T 26-04-2016 RGE_RS10500 ea86da91b86ef0717eec52c61fba740d 254 Pfam PF04397 LytTr DNA-binding domain 160 252 6.3E-19 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS10500 ea86da91b86ef0717eec52c61fba740d 254 Gene3D G3DSA:2.40.50.40 150 215 1.8E-13 T 26-04-2016 RGE_RS10500 ea86da91b86ef0717eec52c61fba740d 254 SUPERFAMILY SSF52172 1 147 2.85E-29 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS10500 ea86da91b86ef0717eec52c61fba740d 254 PANTHER PTHR26402 4 122 5.8E-42 T 26-04-2016 RGE_RS10500 ea86da91b86ef0717eec52c61fba740d 254 SMART SM00448 4 113 1.9E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS10500 ea86da91b86ef0717eec52c61fba740d 254 Pfam PF00072 Response regulator receiver domain 7 113 5.7E-18 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS10500 ea86da91b86ef0717eec52c61fba740d 254 Gene3D G3DSA:3.40.50.2300 2 125 2.4E-26 T 26-04-2016 RGE_RS10500 ea86da91b86ef0717eec52c61fba740d 254 SMART SM00850 158 252 6.7E-19 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS08470 5f8ba251475043ff46a6e781d8d303c9 214 Pfam PF13860 FlgD Ig-like domain 111 169 2.5E-14 T 26-04-2016 IPR025965 FlgD Ig-like domain RGE_RS08470 5f8ba251475043ff46a6e781d8d303c9 214 Pfam PF13861 FlgD Tudor-like domain 82 211 3.6E-15 T 26-04-2016 IPR025963 FlgD Tudor-like domain RGE_RS08470 5f8ba251475043ff46a6e781d8d303c9 214 Pfam PF03963 Flagellar hook capping protein - N-terminal region 12 73 2.9E-24 T 26-04-2016 IPR005648 Flagellar hook capping protein RGE_RS08470 5f8ba251475043ff46a6e781d8d303c9 214 PANTHER PTHR30435:SF15 12 152 1.6E-38 T 26-04-2016 RGE_RS08470 5f8ba251475043ff46a6e781d8d303c9 214 PANTHER PTHR30435 12 152 1.6E-38 T 26-04-2016 RGE_RS11195 00fdfadc51b16bf49f2eb086c220b1b0 280 PANTHER PTHR10992 2 271 2.3E-36 T 26-04-2016 RGE_RS11195 00fdfadc51b16bf49f2eb086c220b1b0 280 Pfam PF00561 alpha/beta hydrolase fold 29 126 8.7E-14 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS11195 00fdfadc51b16bf49f2eb086c220b1b0 280 SUPERFAMILY SSF53474 12 270 2.01E-34 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS11195 00fdfadc51b16bf49f2eb086c220b1b0 280 PANTHER PTHR10992:SF877 2 271 2.3E-36 T 26-04-2016 RGE_RS11195 00fdfadc51b16bf49f2eb086c220b1b0 280 PRINTS PR00412 Epoxide hydrolase signature 97 110 2.5E-6 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS11195 00fdfadc51b16bf49f2eb086c220b1b0 280 PRINTS PR00412 Epoxide hydrolase signature 34 52 2.5E-6 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS11195 00fdfadc51b16bf49f2eb086c220b1b0 280 PRINTS PR00412 Epoxide hydrolase signature 246 268 2.5E-6 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS11195 00fdfadc51b16bf49f2eb086c220b1b0 280 PRINTS PR00412 Epoxide hydrolase signature 111 124 2.5E-6 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS11195 00fdfadc51b16bf49f2eb086c220b1b0 280 Gene3D G3DSA:3.40.50.1820 3 271 7.6E-37 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 172 5.4E-8 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 SUPERFAMILY SSF58104 240 513 1.03E-72 T 26-04-2016 RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 Gene3D G3DSA:1.10.287.950 279 484 2.1E-59 T 26-04-2016 RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 PANTHER PTHR32089 160 515 6.0E-148 T 26-04-2016 RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 317 511 1.9E-58 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 SMART SM00304 211 264 3.2E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 Pfam PF00672 HAMP domain 192 260 1.4E-12 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 2.5E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 2.5E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 2.5E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 2.5E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 2.5E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 PANTHER PTHR32089:SF63 160 515 6.0E-148 T 26-04-2016 RGE_RS03885 be249007acc2dc7f69e7c55e07764d27 525 SMART SM00283 265 512 1.4E-91 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 508 701 2.0E-27 T 26-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 SUPERFAMILY SSF54862 785 825 1.26E-11 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 SUPERFAMILY SSF54862 923 952 1.26E-11 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Gene3D G3DSA:3.40.50.920 305 460 7.9E-38 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 SUPERFAMILY SSF52922 305 450 4.71E-23 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 1589 1642 1.5E-6 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 SUPERFAMILY SSF52518 31 298 3.83E-50 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Gene3D G3DSA:3.40.50.970 28 298 1.0E-72 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 SUPERFAMILY SSF52518 1132 1440 7.78E-42 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Gene3D G3DSA:3.30.70.20 921 960 2.8E-15 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Gene3D G3DSA:3.30.70.20 789 841 2.8E-15 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 SUPERFAMILY SSF53323 500 707 4.71E-39 T 26-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Gene3D G3DSA:3.40.920.10 500 706 2.5E-52 T 26-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 799 810 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Gene3D G3DSA:3.40.50.970 998 1025 1.8E-82 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Gene3D G3DSA:3.40.50.970 1125 1471 1.8E-82 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Gene3D G3DSA:3.30.70.20 1587 1642 2.3E-7 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Pfam PF12837 4Fe-4S binding domain 792 813 1.1E-6 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 PANTHER PTHR32154 864 903 1.7E-112 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 PANTHER PTHR32154 731 812 1.7E-112 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 PANTHER PTHR32154 27 222 1.7E-112 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 PANTHER PTHR32154 922 1028 1.7E-112 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 PANTHER PTHR32154 1133 1379 1.7E-112 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 PANTHER PTHR32154 418 464 1.7E-112 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 PANTHER PTHR32154 484 712 1.7E-112 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 PANTHER PTHR32154 239 395 1.7E-112 T 26-04-2016 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 1227 1340 9.0E-7 T 26-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 309 391 4.6E-16 T 26-04-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II RGE_RS10225 99c4f6e3cfefce551f7e29f3def22053 1665 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 44 275 3.2E-44 T 26-04-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 RGE_RS05605 a4859b76b527486bb5a11d038ed7f972 311 PANTHER PTHR37689 1 307 2.1E-62 T 26-04-2016 RGE_RS05605 a4859b76b527486bb5a11d038ed7f972 311 Gene3D G3DSA:3.90.1670.10 21 302 3.4E-89 T 26-04-2016 IPR024064 FdhE-like RGE_RS05605 a4859b76b527486bb5a11d038ed7f972 311 Pfam PF04216 Protein involved in formate dehydrogenase formation 18 301 2.9E-103 T 26-04-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 RGE_RS05605 a4859b76b527486bb5a11d038ed7f972 311 SUPERFAMILY SSF144020 22 302 1.24E-79 T 26-04-2016 IPR024064 FdhE-like RGE_RS05605 a4859b76b527486bb5a11d038ed7f972 311 Hamap MF_00611 Protein FdhE [fdhE]. 2 304 33.315 T 26-04-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 RGE_RS05605 a4859b76b527486bb5a11d038ed7f972 311 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 3 302 2.0E-83 T 26-04-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 RGE_RS05605 a4859b76b527486bb5a11d038ed7f972 311 PIRSF PIRSF018296 1 307 1.4E-93 T 26-04-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 RGE_RS05605 a4859b76b527486bb5a11d038ed7f972 311 PANTHER PTHR37689:SF1 1 307 2.1E-62 T 26-04-2016 RGE_RS01075 09787f2da2e9124dd7096f36c073dd66 336 Pfam PF02625 XdhC and CoxI family 15 83 1.6E-23 T 26-04-2016 IPR003777 XdhC- CoxI RGE_RS01075 09787f2da2e9124dd7096f36c073dd66 336 Pfam PF13478 XdhC Rossmann domain 165 307 3.2E-38 T 26-04-2016 IPR027051 XdhC Rossmann domain RGE_RS01075 09787f2da2e9124dd7096f36c073dd66 336 PANTHER PTHR30388:SF4 5 314 5.5E-88 T 26-04-2016 RGE_RS01075 09787f2da2e9124dd7096f36c073dd66 336 PANTHER PTHR30388 5 314 5.5E-88 T 26-04-2016 RGE_RS01075 09787f2da2e9124dd7096f36c073dd66 336 Gene3D G3DSA:3.40.50.20 165 197 2.8E-5 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS00370 44502bb3c8f571e6cd820515e6f06b45 296 PIRSF PIRSF000103 5 296 3.6E-69 T 26-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 RGE_RS00370 44502bb3c8f571e6cd820515e6f06b45 296 SUPERFAMILY SSF51735 12 173 9.07E-49 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00370 44502bb3c8f571e6cd820515e6f06b45 296 Gene3D G3DSA:1.10.1040.10 177 295 1.4E-42 T 26-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RGE_RS00370 44502bb3c8f571e6cd820515e6f06b45 296 Gene3D G3DSA:3.40.50.720 11 176 5.3E-52 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00370 44502bb3c8f571e6cd820515e6f06b45 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 13 170 2.3E-46 T 26-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 RGE_RS00370 44502bb3c8f571e6cd820515e6f06b45 296 PANTHER PTHR22981:SF49 13 296 8.3E-155 T 26-04-2016 RGE_RS00370 44502bb3c8f571e6cd820515e6f06b45 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 175 294 1.1E-34 T 26-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RGE_RS00370 44502bb3c8f571e6cd820515e6f06b45 296 PANTHER PTHR22981 13 296 8.3E-155 T 26-04-2016 RGE_RS00370 44502bb3c8f571e6cd820515e6f06b45 296 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 15 28 - T 26-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 RGE_RS00370 44502bb3c8f571e6cd820515e6f06b45 296 SUPERFAMILY SSF48179 173 295 2.27E-40 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS04180 bd1a15f3fa2c45eedd7f899311ea667c 301 SMART SM00382 32 212 2.5E-13 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS04180 bd1a15f3fa2c45eedd7f899311ea667c 301 Pfam PF00005 ABC transporter 23 165 6.8E-32 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS04180 bd1a15f3fa2c45eedd7f899311ea667c 301 PANTHER PTHR24220 5 225 6.9E-95 T 26-04-2016 RGE_RS04180 bd1a15f3fa2c45eedd7f899311ea667c 301 SUPERFAMILY SSF52540 3 231 6.58E-63 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04180 bd1a15f3fa2c45eedd7f899311ea667c 301 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS04180 bd1a15f3fa2c45eedd7f899311ea667c 301 PANTHER PTHR24220:SF305 5 225 6.9E-95 T 26-04-2016 RGE_RS04180 bd1a15f3fa2c45eedd7f899311ea667c 301 Gene3D G3DSA:3.40.50.300 2 226 2.7E-67 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 Pfam PF08264 Anticodon-binding domain of tRNA 667 817 2.4E-37 T 26-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 SUPERFAMILY SSF52374 4 194 1.23E-130 T 26-04-2016 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 SUPERFAMILY SSF52374 590 622 1.23E-130 T 26-04-2016 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 SUPERFAMILY SSF52374 343 552 1.23E-130 T 26-04-2016 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 SUPERFAMILY SSF46589 876 940 2.3E-16 T 26-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 PANTHER PTHR11946:SF5 589 850 0.0 T 26-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 PANTHER PTHR11946:SF5 872 935 0.0 T 26-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 PANTHER PTHR11946:SF5 1 551 0.0 T 26-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 PRINTS PR00986 Valyl-tRNA synthetase signature 456 477 1.2E-34 T 26-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 PRINTS PR00986 Valyl-tRNA synthetase signature 348 361 1.2E-34 T 26-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 PRINTS PR00986 Valyl-tRNA synthetase signature 487 505 1.2E-34 T 26-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 PRINTS PR00986 Valyl-tRNA synthetase signature 38 49 1.2E-34 T 26-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 PRINTS PR00986 Valyl-tRNA synthetase signature 232 249 1.2E-34 T 26-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 Gene3D G3DSA:3.90.740.10 197 340 2.6E-49 T 26-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 876 940 1.5E-18 T 26-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 Hamap MF_02004 Valine--tRNA ligase [valS]. 4 941 15.426 T 26-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 Gene3D G3DSA:1.10.287.380 871 940 2.9E-8 T 26-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 TIGRFAM TIGR00422 valS: valine--tRNA ligase 5 923 0.0 T 26-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 45 56 - T 26-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 Gene3D G3DSA:1.10.730.10 612 810 4.2E-60 T 26-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 SUPERFAMILY SSF47323 623 891 9.91E-56 T 26-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 PANTHER PTHR11946 589 850 0.0 T 26-04-2016 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 PANTHER PTHR11946 872 935 0.0 T 26-04-2016 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 PANTHER PTHR11946 1 551 0.0 T 26-04-2016 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 SUPERFAMILY SSF50677 193 344 3.53E-61 T 26-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 Gene3D G3DSA:3.40.50.620 343 552 9.4E-137 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 Gene3D G3DSA:3.40.50.620 6 195 9.4E-137 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 Gene3D G3DSA:3.40.50.620 590 611 9.4E-137 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS16545 4f033b7f6870611473a8eb5f16b377c8 944 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 20 612 1.3E-202 T 26-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS20590 9b59e6bcf2298a53a415fb17b5ae7353 150 Pfam PF00364 Biotin-requiring enzyme 76 148 3.6E-22 T 26-04-2016 IPR000089 Biotin/lipoyl attachment RGE_RS20590 9b59e6bcf2298a53a415fb17b5ae7353 150 PANTHER PTHR23151 1 150 1.9E-41 T 26-04-2016 RGE_RS20590 9b59e6bcf2298a53a415fb17b5ae7353 150 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 150 5.4E-55 T 26-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RGE_RS20590 9b59e6bcf2298a53a415fb17b5ae7353 150 Gene3D G3DSA:2.40.50.100 73 150 1.7E-30 T 26-04-2016 RGE_RS20590 9b59e6bcf2298a53a415fb17b5ae7353 150 SUPERFAMILY SSF51230 75 150 3.4E-24 T 26-04-2016 IPR011053 Single hybrid motif RGE_RS20590 9b59e6bcf2298a53a415fb17b5ae7353 150 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 96 110 3.3E-17 T 26-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RGE_RS20590 9b59e6bcf2298a53a415fb17b5ae7353 150 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 79 92 3.3E-17 T 26-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RGE_RS20590 9b59e6bcf2298a53a415fb17b5ae7353 150 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 111 124 3.3E-17 T 26-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RGE_RS15025 8b34a2b79bc24f793d3f9bca65266270 218 SUPERFAMILY SSF161098 8 207 4.06E-45 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15025 8b34a2b79bc24f793d3f9bca65266270 218 PANTHER PTHR30450 1 218 1.5E-95 T 26-04-2016 RGE_RS15025 8b34a2b79bc24f793d3f9bca65266270 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 214 1.1E-21 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15025 8b34a2b79bc24f793d3f9bca65266270 218 Gene3D G3DSA:1.10.3720.10 6 216 3.1E-41 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15025 8b34a2b79bc24f793d3f9bca65266270 218 PANTHER PTHR30450:SF1 1 218 1.5E-95 T 26-04-2016 RGE_RS02445 5eb77c61750cae5e52b66f43165ce089 199 PIRSF PIRSF006806 10 192 2.1E-30 T 26-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RGE_RS02445 5eb77c61750cae5e52b66f43165ce089 199 PANTHER PTHR23407 8 192 2.6E-30 T 26-04-2016 RGE_RS02445 5eb77c61750cae5e52b66f43165ce089 199 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 15 189 3.1E-26 T 26-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RGE_RS02445 5eb77c61750cae5e52b66f43165ce089 199 Gene3D G3DSA:3.40.50.10420 14 194 1.4E-45 T 26-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RGE_RS02445 5eb77c61750cae5e52b66f43165ce089 199 SUPERFAMILY SSF100950 14 195 1.53E-43 T 26-04-2016 RGE_RS02445 5eb77c61750cae5e52b66f43165ce089 199 PANTHER PTHR23407:SF1 8 192 2.6E-30 T 26-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RGE_RS02445 5eb77c61750cae5e52b66f43165ce089 199 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 15 189 1.1E-37 T 26-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RGE_RS14245 ab5045e948e765abd3d169104826018b 230 Gene3D G3DSA:1.20.1050.10 83 200 3.2E-52 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS14245 ab5045e948e765abd3d169104826018b 230 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 79 1.7E-13 T 26-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RGE_RS14245 ab5045e948e765abd3d169104826018b 230 Gene3D G3DSA:3.40.30.10 1 82 1.6E-28 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS14245 ab5045e948e765abd3d169104826018b 230 PANTHER PTHR11260:SF178 2 201 3.1E-78 T 26-04-2016 RGE_RS14245 ab5045e948e765abd3d169104826018b 230 SUPERFAMILY SSF52833 1 83 1.66E-22 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS14245 ab5045e948e765abd3d169104826018b 230 SUPERFAMILY SSF47616 77 203 1.64E-37 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS14245 ab5045e948e765abd3d169104826018b 230 Pfam PF00043 Glutathione S-transferase, C-terminal domain 109 196 1.0E-13 T 26-04-2016 IPR004046 Glutathione S-transferase, C-terminal RGE_RS14245 ab5045e948e765abd3d169104826018b 230 PANTHER PTHR11260 2 201 3.1E-78 T 26-04-2016 RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 Gene3D G3DSA:1.10.1040.10 484 574 2.7E-20 T 26-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 SUPERFAMILY SSF51735 298 477 8.83E-56 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 Gene3D G3DSA:1.10.1040.10 616 700 2.3E-13 T 26-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 92 112 - T 26-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 SUPERFAMILY SSF48179 605 700 2.21E-21 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 SUPERFAMILY SSF52096 3 293 7.76E-58 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 SUPERFAMILY SSF48179 481 623 4.25E-26 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 PANTHER PTHR23309:SF9 1 700 4.2E-294 T 26-04-2016 RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 Gene3D G3DSA:3.40.50.720 298 483 1.3E-56 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 301 477 1.0E-61 T 26-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 Gene3D G3DSA:3.90.226.10 221 284 5.3E-56 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 Gene3D G3DSA:3.90.226.10 3 189 5.3E-56 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 PANTHER PTHR23309 1 700 4.2E-294 T 26-04-2016 RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 161 1.5E-32 T 26-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 482 574 1.8E-23 T 26-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RGE_RS11875 89c9ea1bb11b0751b586b34a6b66e2cb 702 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 610 698 6.3E-5 T 26-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RGE_RS03600 0e8213d5c2a6b4958307b608a50a1cb8 484 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 1 271 3.3E-64 T 26-04-2016 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 RGE_RS03600 0e8213d5c2a6b4958307b608a50a1cb8 484 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 1 464 2.1E-122 T 26-04-2016 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 RGE_RS03600 0e8213d5c2a6b4958307b608a50a1cb8 484 Pfam PF06974 Protein of unknown function (DUF1298) 316 461 2.4E-25 T 26-04-2016 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 RGE_RS03600 0e8213d5c2a6b4958307b608a50a1cb8 484 PANTHER PTHR31650 1 479 7.0E-93 T 26-04-2016 RGE_RS03600 0e8213d5c2a6b4958307b608a50a1cb8 484 SUPERFAMILY SSF52777 39 154 4.89E-7 T 26-04-2016 RGE_RS03600 0e8213d5c2a6b4958307b608a50a1cb8 484 PANTHER PTHR31650:SF3 1 479 7.0E-93 T 26-04-2016 RGE_RS14180 79edf3e6e06feb5063cd847b7c9eeca5 374 Gene3D G3DSA:3.40.50.2300 21 222 4.6E-64 T 26-04-2016 RGE_RS14180 79edf3e6e06feb5063cd847b7c9eeca5 374 PANTHER PTHR30483 1 373 2.0E-77 T 26-04-2016 RGE_RS14180 79edf3e6e06feb5063cd847b7c9eeca5 374 Pfam PF13458 Periplasmic binding protein 21 365 6.9E-60 T 26-04-2016 IPR028081 Leucine-binding protein domain RGE_RS14180 79edf3e6e06feb5063cd847b7c9eeca5 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 43 59 1.3E-7 T 26-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RGE_RS14180 79edf3e6e06feb5063cd847b7c9eeca5 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 21 37 1.3E-7 T 26-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RGE_RS14180 79edf3e6e06feb5063cd847b7c9eeca5 374 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 332 347 1.3E-7 T 26-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RGE_RS14180 79edf3e6e06feb5063cd847b7c9eeca5 374 PANTHER PTHR30483:SF20 1 373 2.0E-77 T 26-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RGE_RS14180 79edf3e6e06feb5063cd847b7c9eeca5 374 SUPERFAMILY SSF53822 21 366 2.06E-89 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS15080 bfc5a92af611c61ca4a519337f9b80b5 90 Gene3D G3DSA:3.10.20.280 1 85 4.0E-27 T 26-04-2016 IPR005346 RnfH protein RGE_RS15080 bfc5a92af611c61ca4a519337f9b80b5 90 PANTHER PTHR37483 1 85 7.0E-22 T 26-04-2016 RGE_RS15080 bfc5a92af611c61ca4a519337f9b80b5 90 SUPERFAMILY SSF54285 1 75 1.6E-17 T 26-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RGE_RS15080 bfc5a92af611c61ca4a519337f9b80b5 90 Pfam PF03658 RnfH family Ubiquitin 1 83 1.7E-26 T 26-04-2016 IPR005346 RnfH protein RGE_RS15080 bfc5a92af611c61ca4a519337f9b80b5 90 Hamap MF_00460 Protein RnfH [rnfH]. 1 88 20.482 T 26-04-2016 IPR005346 RnfH protein RGE_RS15080 bfc5a92af611c61ca4a519337f9b80b5 90 PANTHER PTHR37483:SF1 1 85 7.0E-22 T 26-04-2016 RGE_RS17920 ed7d2bf2297aad2cba2996ffb9de7a5b 319 SUPERFAMILY SSF53850 89 296 6.15E-25 T 26-04-2016 RGE_RS17920 ed7d2bf2297aad2cba2996ffb9de7a5b 319 PANTHER PTHR30419 1 312 2.0E-48 T 26-04-2016 RGE_RS17920 ed7d2bf2297aad2cba2996ffb9de7a5b 319 SUPERFAMILY SSF46785 4 103 1.46E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17920 ed7d2bf2297aad2cba2996ffb9de7a5b 319 PANTHER PTHR30419:SF4 1 312 2.0E-48 T 26-04-2016 RGE_RS17920 ed7d2bf2297aad2cba2996ffb9de7a5b 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.4E-14 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS17920 ed7d2bf2297aad2cba2996ffb9de7a5b 319 Gene3D G3DSA:3.40.190.10 89 196 2.1E-11 T 26-04-2016 RGE_RS17920 ed7d2bf2297aad2cba2996ffb9de7a5b 319 Pfam PF03466 LysR substrate binding domain 88 294 1.5E-24 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS17920 ed7d2bf2297aad2cba2996ffb9de7a5b 319 Gene3D G3DSA:1.10.10.10 4 85 2.0E-20 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17920 ed7d2bf2297aad2cba2996ffb9de7a5b 319 Gene3D G3DSA:3.40.190.10 197 266 6.5E-12 T 26-04-2016 RGE_RS17920 ed7d2bf2297aad2cba2996ffb9de7a5b 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.9E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS17920 ed7d2bf2297aad2cba2996ffb9de7a5b 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.9E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS17920 ed7d2bf2297aad2cba2996ffb9de7a5b 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.9E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS21495 549c99b2e50fc809110da8c072a010c6 149 PANTHER PTHR33799 2 134 1.1E-17 T 26-04-2016 RGE_RS21495 549c99b2e50fc809110da8c072a010c6 149 SUPERFAMILY SSF53062 1 125 1.31E-26 T 26-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RGE_RS21495 549c99b2e50fc809110da8c072a010c6 149 Gene3D G3DSA:3.40.50.510 1 127 2.5E-32 T 26-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RGE_RS21495 549c99b2e50fc809110da8c072a010c6 149 Pfam PF03610 PTS system fructose IIA component 4 113 1.2E-14 T 26-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RGE_RS12990 bbe6d09f12e6e8e9d6063c54fea38328 278 Pfam PF07848 PaaX-like protein 5 64 1.6E-7 T 26-04-2016 IPR012906 PaaX-like, N-terminal UniPathway: UPA00930 RGE_RS12990 bbe6d09f12e6e8e9d6063c54fea38328 278 Pfam PF08223 PaaX-like protein C-terminal domain 89 250 5.5E-20 T 26-04-2016 IPR013225 PaaX-like, C-terminal UniPathway: UPA00930 RGE_RS01890 c3395d3b6cf70278a5038fdf647dd36f 150 Gene3D G3DSA:3.30.1050.10 63 143 3.9E-5 T 26-04-2016 IPR003033 SCP2 sterol-binding domain RGE_RS01890 c3395d3b6cf70278a5038fdf647dd36f 150 Pfam PF02036 SCP-2 sterol transfer family 55 142 3.8E-9 T 26-04-2016 IPR003033 SCP2 sterol-binding domain RGE_RS01890 c3395d3b6cf70278a5038fdf647dd36f 150 SUPERFAMILY SSF55718 52 145 8.54E-12 T 26-04-2016 IPR003033 SCP2 sterol-binding domain RGE_RS03150 8f3e53683720abf4bc7e519125ec9088 274 PANTHER PTHR10108:SF705 55 171 1.3E-22 T 26-04-2016 RGE_RS03150 8f3e53683720abf4bc7e519125ec9088 274 Pfam PF08241 Methyltransferase domain 56 150 2.1E-20 T 26-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RGE_RS03150 8f3e53683720abf4bc7e519125ec9088 274 SUPERFAMILY SSF53335 46 260 7.52E-29 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS03150 8f3e53683720abf4bc7e519125ec9088 274 PANTHER PTHR10108 55 171 1.3E-22 T 26-04-2016 RGE_RS03150 8f3e53683720abf4bc7e519125ec9088 274 Gene3D G3DSA:3.40.50.150 50 208 2.1E-26 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS06145 fa11ac475188b615561612b381074504 427 PANTHER PTHR11136 16 427 1.4E-103 T 26-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RGE_RS06145 fa11ac475188b615561612b381074504 427 Gene3D G3DSA:3.40.1190.10 7 285 1.0E-86 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS06145 fa11ac475188b615561612b381074504 427 SUPERFAMILY SSF53244 286 415 3.11E-29 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS06145 fa11ac475188b615561612b381074504 427 Gene3D G3DSA:3.90.190.20 288 414 1.9E-37 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS06145 fa11ac475188b615561612b381074504 427 PIRSF PIRSF001563 2 417 2.1E-95 T 26-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RGE_RS06145 fa11ac475188b615561612b381074504 427 TIGRFAM TIGR01499 folC: bifunctional protein FolC 27 414 4.6E-88 T 26-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RGE_RS06145 fa11ac475188b615561612b381074504 427 Pfam PF08245 Mur ligase middle domain 48 185 1.1E-6 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS06145 fa11ac475188b615561612b381074504 427 SUPERFAMILY SSF53623 6 283 6.87E-77 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS16135 d19354379b176fa99307e70dec0393e9 237 PANTHER PTHR26402 2 228 7.0E-107 T 26-04-2016 RGE_RS16135 d19354379b176fa99307e70dec0393e9 237 SMART SM00448 2 115 7.1E-43 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS16135 d19354379b176fa99307e70dec0393e9 237 SUPERFAMILY SSF46894 128 229 2.75E-26 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS16135 d19354379b176fa99307e70dec0393e9 237 Pfam PF00072 Response regulator receiver domain 4 115 2.0E-25 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS16135 d19354379b176fa99307e70dec0393e9 237 Gene3D G3DSA:1.10.10.10 129 230 8.7E-33 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS16135 d19354379b176fa99307e70dec0393e9 237 PANTHER PTHR26402:SF576 2 228 7.0E-107 T 26-04-2016 RGE_RS16135 d19354379b176fa99307e70dec0393e9 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 228 2.9E-26 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS16135 d19354379b176fa99307e70dec0393e9 237 Gene3D G3DSA:3.40.50.2300 2 125 7.0E-41 T 26-04-2016 RGE_RS16135 d19354379b176fa99307e70dec0393e9 237 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 3 228 2.1E-101 T 26-04-2016 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 RGE_RS16135 d19354379b176fa99307e70dec0393e9 237 SUPERFAMILY SSF52172 2 123 5.27E-42 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS16135 d19354379b176fa99307e70dec0393e9 237 SMART SM00862 153 228 3.0E-24 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS16775 73a3d64a3598f43eedfee4a594d228a2 398 Gene3D G3DSA:1.25.40.10 249 378 9.4E-8 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS16775 73a3d64a3598f43eedfee4a594d228a2 398 Gene3D G3DSA:1.25.40.10 33 154 9.4E-8 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS20120 f2974dd971b354f70fe8c727b5556a2b 313 Gene3D G3DSA:3.40.1190.20 2 306 2.2E-57 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS20120 f2974dd971b354f70fe8c727b5556a2b 313 Pfam PF00294 pfkB family carbohydrate kinase 2 300 1.3E-39 T 26-04-2016 IPR011611 Carbohydrate kinase PfkB RGE_RS20120 f2974dd971b354f70fe8c727b5556a2b 313 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 244 257 - T 26-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RGE_RS20120 f2974dd971b354f70fe8c727b5556a2b 313 PANTHER PTHR10584 2 306 4.4E-55 T 26-04-2016 RGE_RS20120 f2974dd971b354f70fe8c727b5556a2b 313 PANTHER PTHR10584:SF161 2 306 4.4E-55 T 26-04-2016 RGE_RS20120 f2974dd971b354f70fe8c727b5556a2b 313 SUPERFAMILY SSF53613 2 306 3.59E-57 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS00485 74f7c8af3cf683c14441ad30ea4f0dd6 376 PANTHER PTHR21148 1 373 1.6E-168 T 26-04-2016 RGE_RS00485 74f7c8af3cf683c14441ad30ea4f0dd6 376 SUPERFAMILY SSF51713 1 368 4.45E-155 T 26-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS00485 74f7c8af3cf683c14441ad30ea4f0dd6 376 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 4 369 6.8E-162 T 26-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS00485 74f7c8af3cf683c14441ad30ea4f0dd6 376 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 4 369 1.9E-152 T 26-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS00485 74f7c8af3cf683c14441ad30ea4f0dd6 376 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 2 365 55.063 T 26-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS00485 74f7c8af3cf683c14441ad30ea4f0dd6 376 Gene3D G3DSA:3.20.20.105 1 370 4.8E-167 T 26-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS00485 74f7c8af3cf683c14441ad30ea4f0dd6 376 Pfam PF01702 Queuine tRNA-ribosyltransferase 128 367 3.5E-93 T 26-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS00485 74f7c8af3cf683c14441ad30ea4f0dd6 376 PANTHER PTHR21148:SF26 1 373 1.6E-168 T 26-04-2016 RGE_RS13000 d3e09bd6ba376a93348c703cdde7028d 127 Gene3D G3DSA:3.10.180.10 3 126 5.8E-23 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS13000 d3e09bd6ba376a93348c703cdde7028d 127 SUPERFAMILY SSF54593 1 126 6.31E-21 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS13000 d3e09bd6ba376a93348c703cdde7028d 127 PANTHER PTHR36113 3 126 5.0E-20 T 26-04-2016 RGE_RS13000 d3e09bd6ba376a93348c703cdde7028d 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 125 1.2E-6 T 26-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RGE_RS13000 d3e09bd6ba376a93348c703cdde7028d 127 PANTHER PTHR36113:SF1 3 126 5.0E-20 T 26-04-2016 RGE_RS00560 0f909a4c756665a073eb4a582016973e 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 255 1.4E-20 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS00560 0f909a4c756665a073eb4a582016973e 270 SUPERFAMILY SSF161098 65 248 1.18E-27 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS00560 0f909a4c756665a073eb4a582016973e 270 PANTHER PTHR30151:SF18 44 270 6.9E-97 T 26-04-2016 RGE_RS00560 0f909a4c756665a073eb4a582016973e 270 PANTHER PTHR30151 44 270 6.9E-97 T 26-04-2016 RGE_RS00560 0f909a4c756665a073eb4a582016973e 270 Gene3D G3DSA:1.10.3720.10 63 259 1.3E-18 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS06955 ba665925419ea2847a1805dd40ce19e5 383 Pfam PF14559 Tetratricopeptide repeat 306 370 3.0E-8 T 26-04-2016 RGE_RS06955 ba665925419ea2847a1805dd40ce19e5 383 Gene3D G3DSA:1.25.40.10 195 362 8.7E-20 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS06955 ba665925419ea2847a1805dd40ce19e5 383 PANTHER PTHR23083 194 371 2.2E-18 T 26-04-2016 RGE_RS06955 ba665925419ea2847a1805dd40ce19e5 383 SMART SM00028 330 363 180.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS06955 ba665925419ea2847a1805dd40ce19e5 383 SMART SM00028 228 261 30.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS06955 ba665925419ea2847a1805dd40ce19e5 383 SMART SM00028 194 227 30.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS06955 ba665925419ea2847a1805dd40ce19e5 383 SUPERFAMILY SSF48452 195 362 1.48E-20 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS06955 ba665925419ea2847a1805dd40ce19e5 383 Pfam PF13432 Tetratricopeptide repeat 234 281 0.0018 T 26-04-2016 RGE_RS17370 004d98367aae917ef64415d44a9087bc 109 PANTHER PTHR35024 12 104 5.9E-20 T 26-04-2016 RGE_RS17370 004d98367aae917ef64415d44a9087bc 109 PANTHER PTHR35024:SF2 12 104 5.9E-20 T 26-04-2016 RGE_RS17370 004d98367aae917ef64415d44a9087bc 109 Pfam PF04519 Polymer-forming cytoskeletal 12 106 3.3E-22 T 26-04-2016 IPR007607 Protein of unknown function DUF583 RGE_RS08795 838cdc3f987c3886b4dbb39f27730919 801 Pfam PF05099 Tellurite resistance protein TerB 533 641 1.6E-10 T 26-04-2016 IPR007791 Co-chaperone DjlA, N-terminal RGE_RS08795 838cdc3f987c3886b4dbb39f27730919 801 Gene3D G3DSA:1.10.3680.10 532 648 6.0E-21 T 26-04-2016 IPR029024 TerB-like RGE_RS08795 838cdc3f987c3886b4dbb39f27730919 801 SUPERFAMILY SSF158682 534 648 1.57E-19 T 26-04-2016 IPR029024 TerB-like RGE_RS08795 838cdc3f987c3886b4dbb39f27730919 801 Pfam PF13208 TerB N-terminal domain 124 330 3.1E-68 T 26-04-2016 IPR025266 TerB, N-terminal RGE_RS08795 838cdc3f987c3886b4dbb39f27730919 801 Pfam PF15615 TerB-C domain 658 799 1.6E-33 T 26-04-2016 IPR028932 TerB-C domain RGE_RS20550 cfc0e0ae9faae3d3d050fafed1e95b86 196 PANTHER PTHR35602 2 195 4.6E-52 T 26-04-2016 RGE_RS20550 cfc0e0ae9faae3d3d050fafed1e95b86 196 SUPERFAMILY SSF53474 8 192 5.07E-17 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS20550 cfc0e0ae9faae3d3d050fafed1e95b86 196 PANTHER PTHR35602:SF3 2 195 4.6E-52 T 26-04-2016 RGE_RS20550 cfc0e0ae9faae3d3d050fafed1e95b86 196 Gene3D G3DSA:3.40.50.1820 133 186 2.5E-17 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS20550 cfc0e0ae9faae3d3d050fafed1e95b86 196 Gene3D G3DSA:3.40.50.1820 5 100 2.5E-17 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS20550 cfc0e0ae9faae3d3d050fafed1e95b86 196 Pfam PF05728 Uncharacterised protein family (UPF0227) 8 191 2.1E-42 T 26-04-2016 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA RGE_RS03165 9b9f16b6ba74e8f29427177b023d1815 329 Gene3D G3DSA:3.40.630.30 13 144 4.4E-30 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS03165 9b9f16b6ba74e8f29427177b023d1815 329 SUPERFAMILY SSF56784 168 309 1.51E-27 T 26-04-2016 IPR023214 HAD-like domain RGE_RS03165 9b9f16b6ba74e8f29427177b023d1815 329 Gene3D G3DSA:3.40.50.1000 190 311 2.2E-29 T 26-04-2016 IPR023214 HAD-like domain RGE_RS03165 9b9f16b6ba74e8f29427177b023d1815 329 PANTHER PTHR12725 196 304 2.1E-20 T 26-04-2016 RGE_RS03165 9b9f16b6ba74e8f29427177b023d1815 329 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 223 293 5.9E-6 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS03165 9b9f16b6ba74e8f29427177b023d1815 329 SUPERFAMILY SSF55729 13 144 3.54E-28 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS03165 9b9f16b6ba74e8f29427177b023d1815 329 Pfam PF00583 Acetyltransferase (GNAT) family 52 135 3.0E-13 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS03165 9b9f16b6ba74e8f29427177b023d1815 329 Pfam PF13419 Haloacid dehalogenase-like hydrolase 195 298 1.1E-11 T 26-04-2016 IPR023214 HAD-like domain RGE_RS13990 21db23d86712e96e9412e93063346131 782 SMART SM00091 453 519 2.6E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS13990 21db23d86712e96e9412e93063346131 782 SMART SM00091 10 79 0.13 T 26-04-2016 IPR000014 PAS domain RGE_RS13990 21db23d86712e96e9412e93063346131 782 SUPERFAMILY SSF55785 15 118 1.38E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS13990 21db23d86712e96e9412e93063346131 782 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 456 559 2.2E-12 T 26-04-2016 IPR000014 PAS domain RGE_RS13990 21db23d86712e96e9412e93063346131 782 SUPERFAMILY SSF55781 141 298 1.55E-6 T 26-04-2016 IPR029016 GAF domain-like RGE_RS13990 21db23d86712e96e9412e93063346131 782 Gene3D G3DSA:3.30.450.20 454 560 3.3E-14 T 26-04-2016 RGE_RS13990 21db23d86712e96e9412e93063346131 782 Pfam PF08448 PAS fold 16 124 1.5E-7 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS13990 21db23d86712e96e9412e93063346131 782 Gene3D G3DSA:3.30.450.40 132 279 2.6E-4 T 26-04-2016 IPR029016 GAF domain-like RGE_RS13990 21db23d86712e96e9412e93063346131 782 Gene3D G3DSA:3.30.450.40 293 448 6.7E-10 T 26-04-2016 IPR029016 GAF domain-like RGE_RS13990 21db23d86712e96e9412e93063346131 782 Pfam PF00989 PAS fold 457 545 4.3E-9 T 26-04-2016 IPR013767 PAS fold GO:0006355 RGE_RS13990 21db23d86712e96e9412e93063346131 782 SUPERFAMILY SSF55781 294 450 2.4E-12 T 26-04-2016 IPR029016 GAF domain-like RGE_RS13990 21db23d86712e96e9412e93063346131 782 SUPERFAMILY SSF55785 456 549 2.97E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS13990 21db23d86712e96e9412e93063346131 782 Gene3D G3DSA:3.30.450.20 14 124 2.5E-7 T 26-04-2016 RGE_RS18815 c244b6b53bf84872be048f0822c94e25 223 Gene3D G3DSA:3.30.460.10 2 106 2.6E-32 T 26-04-2016 RGE_RS18815 c244b6b53bf84872be048f0822c94e25 223 PANTHER PTHR21043 1 106 3.1E-29 T 26-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RGE_RS18815 c244b6b53bf84872be048f0822c94e25 223 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 2.4E-30 T 26-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RGE_RS18815 c244b6b53bf84872be048f0822c94e25 223 Pfam PF02410 Ribosomal silencing factor during starvation 9 104 4.5E-22 T 26-04-2016 RGE_RS18815 c244b6b53bf84872be048f0822c94e25 223 SUPERFAMILY SSF81301 1 107 9.16E-32 T 26-04-2016 RGE_RS18815 c244b6b53bf84872be048f0822c94e25 223 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 21.339 T 26-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RGE_RS01970 9c35e11ca5683efbb12e1926342ea68c 305 Gene3D G3DSA:3.40.50.300 115 184 2.1E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01970 9c35e11ca5683efbb12e1926342ea68c 305 TIGRFAM TIGR04352 HprK_rel_A: HprK-related kinase A 21 299 1.4E-108 T 26-04-2016 IPR027600 HprK-related kinase A RGE_RS01970 9c35e11ca5683efbb12e1926342ea68c 305 SUPERFAMILY SSF53795 115 276 4.27E-13 T 26-04-2016 RGE_RS18000 5cf3a1fc413aa08562a1ad95418e4129 191 Pfam PF00881 Nitroreductase family 13 150 2.7E-12 T 26-04-2016 IPR029479 Nitroreductase RGE_RS18000 5cf3a1fc413aa08562a1ad95418e4129 191 PANTHER PTHR23026:SF110 1 187 4.9E-77 T 26-04-2016 RGE_RS18000 5cf3a1fc413aa08562a1ad95418e4129 191 Gene3D G3DSA:3.40.109.10 4 189 5.6E-36 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS18000 5cf3a1fc413aa08562a1ad95418e4129 191 SUPERFAMILY SSF55469 6 189 2.22E-40 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS18000 5cf3a1fc413aa08562a1ad95418e4129 191 Hamap MF_01204 Probable malonic semialdehyde reductase RutE [rutE]. 1 191 42.828 T 26-04-2016 IPR023936 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE GO:0016491|GO:0055114 RGE_RS18000 5cf3a1fc413aa08562a1ad95418e4129 191 PANTHER PTHR23026 1 187 4.9E-77 T 26-04-2016 RGE_RS05510 a3b4a592a0884ef6abe8adeb4fc9d08c 463 Pfam PF01565 FAD binding domain 55 186 5.1E-25 T 26-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RGE_RS05510 a3b4a592a0884ef6abe8adeb4fc9d08c 463 SUPERFAMILY SSF56176 37 217 3.54E-42 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS05510 a3b4a592a0884ef6abe8adeb4fc9d08c 463 Gene3D G3DSA:3.30.43.10 43 108 2.0E-16 T 26-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RGE_RS05510 a3b4a592a0884ef6abe8adeb4fc9d08c 463 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 77 87 - T 26-04-2016 IPR019793 Peroxidases heam-ligand binding site RGE_RS05510 a3b4a592a0884ef6abe8adeb4fc9d08c 463 Gene3D G3DSA:3.30.465.10 109 217 1.5E-27 T 26-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RGE_RS05510 a3b4a592a0884ef6abe8adeb4fc9d08c 463 Pfam PF04030 D-arabinono-1,4-lactone oxidase 212 458 1.5E-46 T 26-04-2016 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 RGE_RS05510 a3b4a592a0884ef6abe8adeb4fc9d08c 463 PANTHER PTHR13878:SF63 44 462 6.0E-82 T 26-04-2016 RGE_RS05510 a3b4a592a0884ef6abe8adeb4fc9d08c 463 TIGRFAM TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase 44 461 2.4E-137 T 26-04-2016 RGE_RS05510 a3b4a592a0884ef6abe8adeb4fc9d08c 463 SUPERFAMILY SSF55103 198 451 1.79E-5 T 26-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RGE_RS05510 a3b4a592a0884ef6abe8adeb4fc9d08c 463 PANTHER PTHR13878 44 462 6.0E-82 T 26-04-2016 RGE_RS05385 46ae131bb461e5eb7aa2f24db0266ea1 425 Gene3D G3DSA:3.30.870.10 247 391 7.9E-39 T 26-04-2016 RGE_RS05385 46ae131bb461e5eb7aa2f24db0266ea1 425 SMART SM00155 329 356 0.0018 T 26-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RGE_RS05385 46ae131bb461e5eb7aa2f24db0266ea1 425 SMART SM00155 125 152 0.0023 T 26-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RGE_RS05385 46ae131bb461e5eb7aa2f24db0266ea1 425 PANTHER PTHR21248:SF5 24 422 6.4E-89 T 26-04-2016 RGE_RS05385 46ae131bb461e5eb7aa2f24db0266ea1 425 PANTHER PTHR21248 24 422 6.4E-89 T 26-04-2016 RGE_RS05385 46ae131bb461e5eb7aa2f24db0266ea1 425 SUPERFAMILY SSF56024 236 390 5.16E-41 T 26-04-2016 RGE_RS05385 46ae131bb461e5eb7aa2f24db0266ea1 425 Pfam PF13091 PLD-like domain 257 380 2.2E-28 T 26-04-2016 IPR025202 Phospholipase D-like domain RGE_RS05385 46ae131bb461e5eb7aa2f24db0266ea1 425 Pfam PF13091 PLD-like domain 41 149 6.4E-14 T 26-04-2016 IPR025202 Phospholipase D-like domain RGE_RS05385 46ae131bb461e5eb7aa2f24db0266ea1 425 SUPERFAMILY SSF56024 15 190 2.29E-40 T 26-04-2016 RGE_RS05385 46ae131bb461e5eb7aa2f24db0266ea1 425 Gene3D G3DSA:3.30.870.10 21 192 2.4E-37 T 26-04-2016 RGE_RS05385 46ae131bb461e5eb7aa2f24db0266ea1 425 Hamap MF_01917 Cardiolipin synthase B [clsB]. 18 425 44.728 T 26-04-2016 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 RGE_RS06210 9110b0464ff4bf2705698a3e7b53ebeb 140 PANTHER PTHR41377 1 136 1.2E-45 T 26-04-2016 RGE_RS06210 9110b0464ff4bf2705698a3e7b53ebeb 140 PANTHER PTHR41377:SF1 1 136 1.2E-45 T 26-04-2016 RGE_RS06210 9110b0464ff4bf2705698a3e7b53ebeb 140 SUPERFAMILY SSF140736 3 140 5.89E-56 T 26-04-2016 RGE_RS06210 9110b0464ff4bf2705698a3e7b53ebeb 140 Pfam PF08837 Protein of unknown function (DUF1810) 5 139 4.5E-54 T 26-04-2016 IPR014937 Protein of unknown function DUF1810 RGE_RS06210 9110b0464ff4bf2705698a3e7b53ebeb 140 PIRSF PIRSF008546 1 140 7.8E-52 T 26-04-2016 IPR014937 Protein of unknown function DUF1810 RGE_RS01120 b7173b7e1ab9cd2406f9b996391143b2 290 Pfam PF00119 ATP synthase A chain 44 283 1.5E-50 T 26-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RGE_RS01120 b7173b7e1ab9cd2406f9b996391143b2 290 Gene3D G3DSA:1.20.120.220 97 290 2.9E-45 T 26-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RGE_RS01120 b7173b7e1ab9cd2406f9b996391143b2 290 PANTHER PTHR11410:SF7 28 121 1.3E-64 T 26-04-2016 RGE_RS01120 b7173b7e1ab9cd2406f9b996391143b2 290 PANTHER PTHR11410:SF7 139 290 1.3E-64 T 26-04-2016 RGE_RS01120 b7173b7e1ab9cd2406f9b996391143b2 290 Hamap MF_01393 ATP synthase subunit a [atpB]. 33 290 13.893 T 26-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RGE_RS01120 b7173b7e1ab9cd2406f9b996391143b2 290 ProSitePatterns PS00449 ATP synthase a subunit signature. 214 223 - T 26-04-2016 IPR023011 ATPase, F0 complex, subunit A, active site RGE_RS01120 b7173b7e1ab9cd2406f9b996391143b2 290 PANTHER PTHR11410 28 121 1.3E-64 T 26-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RGE_RS01120 b7173b7e1ab9cd2406f9b996391143b2 290 PANTHER PTHR11410 139 290 1.3E-64 T 26-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RGE_RS01120 b7173b7e1ab9cd2406f9b996391143b2 290 SUPERFAMILY SSF81336 97 284 5.23E-35 T 26-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RGE_RS01120 b7173b7e1ab9cd2406f9b996391143b2 290 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 39 285 4.7E-37 T 26-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RGE_RS22085 b1ba7cffc4be3e2ca218097fdbc1d8b7 288 SUPERFAMILY SSF52283 1 115 1.19E-6 T 26-04-2016 RGE_RS22085 b1ba7cffc4be3e2ca218097fdbc1d8b7 288 Gene3D G3DSA:3.40.50.720 1 119 4.5E-23 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22085 b1ba7cffc4be3e2ca218097fdbc1d8b7 288 SUPERFAMILY SSF51735 87 254 7.81E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22085 b1ba7cffc4be3e2ca218097fdbc1d8b7 288 Gene3D G3DSA:3.40.50.720 170 257 1.6E-16 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22085 b1ba7cffc4be3e2ca218097fdbc1d8b7 288 PANTHER PTHR10996 13 284 3.5E-71 T 26-04-2016 RGE_RS22085 b1ba7cffc4be3e2ca218097fdbc1d8b7 288 Gene3D G3DSA:3.40.50.720 120 169 1.5E-6 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22085 b1ba7cffc4be3e2ca218097fdbc1d8b7 288 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 95 253 3.6E-36 T 26-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RGE_RS22085 b1ba7cffc4be3e2ca218097fdbc1d8b7 288 PANTHER PTHR10996:SF114 13 284 3.5E-71 T 26-04-2016 RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 Gene3D G3DSA:3.40.50.970 10 327 4.3E-128 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 PANTHER PTHR11624:SF1 5 315 0.0 T 26-04-2016 RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 PANTHER PTHR11624:SF1 334 675 0.0 T 26-04-2016 RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 ProSitePatterns PS00801 Transketolase signature 1. 17 37 - T 26-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 SUPERFAMILY SSF52922 541 674 7.2E-41 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 PANTHER PTHR11624 5 315 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 PANTHER PTHR11624 334 675 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 Gene3D G3DSA:3.40.50.920 546 674 6.1E-43 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 Pfam PF02780 Transketolase, C-terminal domain 560 665 1.1E-14 T 26-04-2016 IPR033248 Transketolase, C-terminal domain RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 11 339 2.4E-155 T 26-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 SUPERFAMILY SSF52518 351 536 6.58E-65 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 TIGRFAM TIGR00232 tktlase_bact: transketolase 12 673 6.8E-281 T 26-04-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 Pfam PF02779 Transketolase, pyrimidine binding domain 359 534 8.7E-47 T 26-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 SMART SM00861 360 535 2.4E-68 T 26-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 SUPERFAMILY SSF52518 11 335 6.7E-120 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS21875 31b782e7ece5565eec10fb7923bbebf1 675 Gene3D G3DSA:3.40.50.970 332 543 2.2E-77 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS22190 4dc5c3f1c1d832aaab0ef12ac3017fdf 465 PANTHER PTHR39329 1 465 4.2E-274 T 26-04-2016 RGE_RS22190 4dc5c3f1c1d832aaab0ef12ac3017fdf 465 PIRSF PIRSF018788 1 460 4.3E-229 T 26-04-2016 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 RGE_RS22190 4dc5c3f1c1d832aaab0ef12ac3017fdf 465 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 13 445 5.7E-216 T 26-04-2016 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 RGE_RS22190 4dc5c3f1c1d832aaab0ef12ac3017fdf 465 Gene3D G3DSA:3.20.20.70 143 447 3.5E-159 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS22190 4dc5c3f1c1d832aaab0ef12ac3017fdf 465 Gene3D G3DSA:2.30.170.30 1 54 4.9E-22 T 26-04-2016 RGE_RS22190 4dc5c3f1c1d832aaab0ef12ac3017fdf 465 PANTHER PTHR39329:SF1 1 465 4.2E-274 T 26-04-2016 RGE_RS22190 4dc5c3f1c1d832aaab0ef12ac3017fdf 465 Gene3D G3DSA:1.10.220.70 55 141 1.1E-40 T 26-04-2016 RGE_RS20225 fc650b16d2b9356dbda2481254355ef0 403 Pfam PF13579 Glycosyl transferase 4-like domain 16 197 3.5E-22 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS20225 fc650b16d2b9356dbda2481254355ef0 403 Gene3D G3DSA:3.40.50.2000 11 194 2.0E-5 T 26-04-2016 RGE_RS20225 fc650b16d2b9356dbda2481254355ef0 403 Gene3D G3DSA:3.40.50.2000 195 382 5.2E-11 T 26-04-2016 RGE_RS20225 fc650b16d2b9356dbda2481254355ef0 403 PANTHER PTHR12526 83 403 9.8E-20 T 26-04-2016 RGE_RS20225 fc650b16d2b9356dbda2481254355ef0 403 SUPERFAMILY SSF53756 6 402 7.73E-44 T 26-04-2016 RGE_RS20225 fc650b16d2b9356dbda2481254355ef0 403 Pfam PF13692 Glycosyl transferases group 1 227 367 2.9E-14 T 26-04-2016 RGE_RS14490 4f5ee12c33261befd3276ec56e33fa6e 475 SUPERFAMILY SSF56954 2 463 2.49E-82 T 26-04-2016 RGE_RS14490 4f5ee12c33261befd3276ec56e33fa6e 475 Gene3D G3DSA:1.20.1600.10 54 464 2.6E-78 T 26-04-2016 RGE_RS14490 4f5ee12c33261befd3276ec56e33fa6e 475 PANTHER PTHR30203:SF3 14 470 1.1E-56 T 26-04-2016 RGE_RS14490 4f5ee12c33261befd3276ec56e33fa6e 475 Pfam PF02321 Outer membrane efflux protein 66 245 2.6E-16 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS14490 4f5ee12c33261befd3276ec56e33fa6e 475 Pfam PF02321 Outer membrane efflux protein 279 459 1.2E-24 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS14490 4f5ee12c33261befd3276ec56e33fa6e 475 PANTHER PTHR30203 14 470 1.1E-56 T 26-04-2016 RGE_RS14490 4f5ee12c33261befd3276ec56e33fa6e 475 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 15 461 2.3E-92 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS00765 0a3737929555a386f371ee0b17f7174e 150 Gene3D G3DSA:3.10.450.50 15 135 7.6E-37 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS00765 0a3737929555a386f371ee0b17f7174e 150 SUPERFAMILY SSF54427 15 132 1.15E-31 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS00765 0a3737929555a386f371ee0b17f7174e 150 PANTHER PTHR34957 19 131 1.3E-15 T 26-04-2016 RGE_RS00765 0a3737929555a386f371ee0b17f7174e 150 Pfam PF13474 SnoaL-like domain 20 131 6.6E-19 T 26-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RGE_RS09795 2e6dfd8ca48af29b80eddd125fdafd60 159 Pfam PF00581 Rhodanese-like domain 38 134 8.5E-11 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS09795 2e6dfd8ca48af29b80eddd125fdafd60 159 SMART SM00450 35 142 1.1E-7 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS09795 2e6dfd8ca48af29b80eddd125fdafd60 159 Gene3D G3DSA:3.40.250.10 30 158 8.2E-33 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS09795 2e6dfd8ca48af29b80eddd125fdafd60 159 SUPERFAMILY SSF52821 17 157 1.19E-20 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS09795 2e6dfd8ca48af29b80eddd125fdafd60 159 PANTHER PTHR12231 50 134 1.8E-12 T 26-04-2016 RGE_RS22935 10e8bb6679cedfad14ef01084ad2d686 179 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 7 175 8.0E-67 T 26-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 RGE_RS22935 10e8bb6679cedfad14ef01084ad2d686 179 Gene3D G3DSA:3.40.50.2020 5 177 9.1E-66 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS22935 10e8bb6679cedfad14ef01084ad2d686 179 SUPERFAMILY SSF53271 7 175 1.84E-51 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS22935 10e8bb6679cedfad14ef01084ad2d686 179 Pfam PF00156 Phosphoribosyl transferase domain 45 156 1.9E-14 T 26-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RGE_RS22935 10e8bb6679cedfad14ef01084ad2d686 179 PANTHER PTHR32315 5 179 3.0E-83 T 26-04-2016 RGE_RS22935 10e8bb6679cedfad14ef01084ad2d686 179 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 7 176 37.044 T 26-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 RGE_RS22910 22963d598269853d14641b8560be8f0e 260 PANTHER PTHR24322:SF631 153 185 4.3E-37 T 26-04-2016 RGE_RS22910 22963d598269853d14641b8560be8f0e 260 PANTHER PTHR24322:SF631 8 137 4.3E-37 T 26-04-2016 RGE_RS22910 22963d598269853d14641b8560be8f0e 260 SUPERFAMILY SSF51735 5 247 5.52E-56 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22910 22963d598269853d14641b8560be8f0e 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS22910 22963d598269853d14641b8560be8f0e 260 Gene3D G3DSA:3.40.50.720 5 241 3.7E-53 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22910 22963d598269853d14641b8560be8f0e 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.0E-6 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS22910 22963d598269853d14641b8560be8f0e 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 3.0E-6 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS22910 22963d598269853d14641b8560be8f0e 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 3.0E-6 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS22910 22963d598269853d14641b8560be8f0e 260 PANTHER PTHR24322 153 185 4.3E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS22910 22963d598269853d14641b8560be8f0e 260 PANTHER PTHR24322 8 137 4.3E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS22910 22963d598269853d14641b8560be8f0e 260 Pfam PF00106 short chain dehydrogenase 6 193 3.9E-37 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS22910 22963d598269853d14641b8560be8f0e 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.5E-22 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS22910 22963d598269853d14641b8560be8f0e 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.5E-22 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS22910 22963d598269853d14641b8560be8f0e 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.5E-22 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS22910 22963d598269853d14641b8560be8f0e 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.5E-22 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS22910 22963d598269853d14641b8560be8f0e 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.5E-22 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PANTHER PTHR30477:SF16 6 303 6.5E-76 T 26-04-2016 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 Pfam PF01297 Zinc-uptake complex component A periplasmic 31 298 4.7E-68 T 26-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 Gene3D G3DSA:3.40.50.1980 25 180 1.9E-45 T 26-04-2016 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00691 Adhesin B signature 28 49 8.5E-25 T 26-04-2016 IPR006129 Adhesin B GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00691 Adhesin B signature 72 91 8.5E-25 T 26-04-2016 IPR006129 Adhesin B GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00691 Adhesin B signature 130 149 8.5E-25 T 26-04-2016 IPR006129 Adhesin B GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00691 Adhesin B signature 53 71 8.5E-25 T 26-04-2016 IPR006129 Adhesin B GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00691 Adhesin B signature 188 205 8.5E-25 T 26-04-2016 IPR006129 Adhesin B GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00691 Adhesin B signature 237 254 8.5E-25 T 26-04-2016 IPR006129 Adhesin B GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00691 Adhesin B signature 259 277 8.5E-25 T 26-04-2016 IPR006129 Adhesin B GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00691 Adhesin B signature 280 298 8.5E-25 T 26-04-2016 IPR006129 Adhesin B GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PANTHER PTHR30477 6 303 6.5E-76 T 26-04-2016 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00690 Adhesin family signature 72 89 9.1E-28 T 26-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00690 Adhesin family signature 188 209 9.1E-28 T 26-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00690 Adhesin family signature 241 259 9.1E-28 T 26-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00690 Adhesin family signature 267 286 9.1E-28 T 26-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00690 Adhesin family signature 59 72 9.1E-28 T 26-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 PRINTS PR00690 Adhesin family signature 28 46 9.1E-28 T 26-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 SUPERFAMILY SSF53807 27 302 2.55E-78 T 26-04-2016 RGE_RS02885 9791d1ffefb25402cac5bbca769c2df7 304 Gene3D G3DSA:3.40.50.1980 181 302 1.3E-37 T 26-04-2016 RGE_RS06580 5873eaccac674bd7be455e60b8a61a90 157 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 131 2.5E-39 T 26-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RGE_RS06580 5873eaccac674bd7be455e60b8a61a90 157 PANTHER PTHR20941 1 139 2.8E-53 T 26-04-2016 RGE_RS06580 5873eaccac674bd7be455e60b8a61a90 157 SUPERFAMILY SSF55083 2 140 1.24E-48 T 26-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RGE_RS06580 5873eaccac674bd7be455e60b8a61a90 157 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 86 97 - T 26-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RGE_RS06580 5873eaccac674bd7be455e60b8a61a90 157 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 4 131 1.0E-34 T 26-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RGE_RS06580 5873eaccac674bd7be455e60b8a61a90 157 Gene3D G3DSA:3.30.70.560 2 142 7.7E-50 T 26-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RGE_RS11815 6ff6a4ed183a70232132d7d0733df560 466 Pfam PF00271 Helicase conserved C-terminal domain 234 342 2.2E-27 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS11815 6ff6a4ed183a70232132d7d0733df560 466 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 156 164 - T 26-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RGE_RS11815 6ff6a4ed183a70232132d7d0733df560 466 Gene3D G3DSA:3.40.50.300 1 214 1.8E-79 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11815 6ff6a4ed183a70232132d7d0733df560 466 PANTHER PTHR24031 1 372 9.7E-176 T 26-04-2016 RGE_RS11815 6ff6a4ed183a70232132d7d0733df560 466 Gene3D G3DSA:3.40.50.300 215 373 5.3E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11815 6ff6a4ed183a70232132d7d0733df560 466 SMART SM00487 20 225 2.0E-60 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS11815 6ff6a4ed183a70232132d7d0733df560 466 PANTHER PTHR24031:SF261 1 372 9.7E-176 T 26-04-2016 RGE_RS11815 6ff6a4ed183a70232132d7d0733df560 466 SUPERFAMILY SSF52540 78 362 3.31E-73 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11815 6ff6a4ed183a70232132d7d0733df560 466 SMART SM00490 261 342 7.8E-33 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS11815 6ff6a4ed183a70232132d7d0733df560 466 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 464 50.87 T 26-04-2016 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 RGE_RS11815 6ff6a4ed183a70232132d7d0733df560 466 Pfam PF00270 DEAD/DEAH box helicase 25 198 4.0E-50 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS05185 99927a489e432e6ce4097bf2b17a73e2 250 PANTHER PTHR23344 3 241 2.6E-55 T 26-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RGE_RS05185 99927a489e432e6ce4097bf2b17a73e2 250 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 12 239 6.0E-38 T 26-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RGE_RS05185 99927a489e432e6ce4097bf2b17a73e2 250 SUPERFAMILY SSF51695 5 241 9.68E-60 T 26-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RGE_RS05185 99927a489e432e6ce4097bf2b17a73e2 250 Gene3D G3DSA:3.20.20.190 3 241 8.8E-57 T 26-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RGE_RS21910 461ca1c8104fc8fd295e8ee64b33a9de 299 SUPERFAMILY SSF103481 48 148 6.02E-10 T 26-04-2016 RGE_RS21910 461ca1c8104fc8fd295e8ee64b33a9de 299 Pfam PF00892 EamA-like transporter family 161 297 2.2E-17 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS21910 461ca1c8104fc8fd295e8ee64b33a9de 299 Pfam PF00892 EamA-like transporter family 14 145 1.9E-14 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS21910 461ca1c8104fc8fd295e8ee64b33a9de 299 SUPERFAMILY SSF103481 196 298 2.48E-13 T 26-04-2016 RGE_RS21910 461ca1c8104fc8fd295e8ee64b33a9de 299 PANTHER PTHR22911:SF63 14 298 9.4E-81 T 26-04-2016 RGE_RS21910 461ca1c8104fc8fd295e8ee64b33a9de 299 PANTHER PTHR22911 14 298 9.4E-81 T 26-04-2016 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 Pfam PF13365 Trypsin-like peptidase domain 79 217 1.5E-37 T 26-04-2016 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 PANTHER PTHR22939 12 358 1.9E-126 T 26-04-2016 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 Gene3D G3DSA:2.40.10.10 35 145 4.8E-31 T 26-04-2016 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 PRINTS PR00834 HtrA/DegQ protease family signature 88 100 1.3E-44 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 PRINTS PR00834 HtrA/DegQ protease family signature 188 205 1.3E-44 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 PRINTS PR00834 HtrA/DegQ protease family signature 303 315 1.3E-44 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 PRINTS PR00834 HtrA/DegQ protease family signature 109 129 1.3E-44 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 PRINTS PR00834 HtrA/DegQ protease family signature 151 175 1.3E-44 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 PRINTS PR00834 HtrA/DegQ protease family signature 210 227 1.3E-44 T 26-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 PANTHER PTHR22939:SF81 12 358 1.9E-126 T 26-04-2016 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 SUPERFAMILY SSF50494 45 252 3.09E-61 T 26-04-2016 IPR009003 Peptidase S1, PA clan RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 Gene3D G3DSA:2.40.10.10 146 258 2.5E-45 T 26-04-2016 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 Gene3D G3DSA:2.30.42.10 259 357 3.0E-23 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 SUPERFAMILY SSF50156 240 354 2.1E-17 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 SMART SM00228 229 345 9.4E-7 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS16035 ed652796f4d53843c9f6d283b7c17704 358 Pfam PF13180 PDZ domain 256 354 4.1E-18 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS18730 454d1c9860ec76f4d6f28c60af242584 265 SUPERFAMILY SSF46785 22 93 1.07E-12 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18730 454d1c9860ec76f4d6f28c60af242584 265 Gene3D G3DSA:1.10.10.10 18 91 2.8E-17 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18730 454d1c9860ec76f4d6f28c60af242584 265 SUPERFAMILY SSF55781 93 259 5.49E-42 T 26-04-2016 IPR029016 GAF domain-like RGE_RS18730 454d1c9860ec76f4d6f28c60af242584 265 SMART SM00346 22 110 5.6E-15 T 26-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RGE_RS18730 454d1c9860ec76f4d6f28c60af242584 265 PANTHER PTHR30136:SF17 1 240 4.5E-60 T 26-04-2016 RGE_RS18730 454d1c9860ec76f4d6f28c60af242584 265 Pfam PF01614 Bacterial transcriptional regulator 136 246 1.3E-27 T 26-04-2016 IPR014757 Transcription regulator IclR, C-terminal RGE_RS18730 454d1c9860ec76f4d6f28c60af242584 265 PANTHER PTHR30136 1 240 4.5E-60 T 26-04-2016 RGE_RS18730 454d1c9860ec76f4d6f28c60af242584 265 Gene3D G3DSA:3.30.450.40 92 262 7.0E-47 T 26-04-2016 IPR029016 GAF domain-like RGE_RS18730 454d1c9860ec76f4d6f28c60af242584 265 Pfam PF09339 IclR helix-turn-helix domain 25 71 5.2E-12 T 26-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 Pfam PF09330 D-lactate dehydrogenase, membrane binding 273 561 2.0E-132 T 26-04-2016 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 SUPERFAMILY SSF56176 5 268 5.14E-68 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 Gene3D G3DSA:3.30.1370.20 429 513 4.1E-42 T 26-04-2016 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 Gene3D G3DSA:3.30.70.610 265 305 1.4E-35 T 26-04-2016 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 Gene3D G3DSA:3.30.70.610 370 428 1.4E-35 T 26-04-2016 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 SUPERFAMILY SSF55103 272 561 1.4E-105 T 26-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 Gene3D G3DSA:3.30.43.10 4 86 1.3E-6 T 26-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 PIRSF PIRSF000101 1 563 2.6E-267 T 26-04-2016 IPR012256 D-lactate dehydrogenase GO:0004457|GO:0005887|GO:0006089|GO:0050660|GO:0051287 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 PANTHER PTHR11748 7 186 1.0E-49 T 26-04-2016 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 PANTHER PTHR11748 238 318 1.0E-49 T 26-04-2016 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 PANTHER PTHR11748:SF82 7 186 1.0E-49 T 26-04-2016 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 PANTHER PTHR11748:SF82 238 318 1.0E-49 T 26-04-2016 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 Gene3D G3DSA:3.30.465.10 102 264 1.0E-79 T 26-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RGE_RS17335 408f58d6b29392e14842de0fbd9e312b 581 Pfam PF01565 FAD binding domain 42 175 4.4E-8 T 26-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RGE_RS18755 a1d8a48fb179560cf933e05beac1ec08 473 SMART SM00487 30 229 8.2E-59 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS18755 a1d8a48fb179560cf933e05beac1ec08 473 PANTHER PTHR24031:SF180 12 456 4.6E-224 T 26-04-2016 RGE_RS18755 a1d8a48fb179560cf933e05beac1ec08 473 PANTHER PTHR24031 12 456 4.6E-224 T 26-04-2016 RGE_RS18755 a1d8a48fb179560cf933e05beac1ec08 473 Gene3D G3DSA:3.40.50.300 7 213 1.4E-77 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18755 a1d8a48fb179560cf933e05beac1ec08 473 SUPERFAMILY SSF52540 81 360 7.79E-66 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18755 a1d8a48fb179560cf933e05beac1ec08 473 SMART SM00490 265 346 1.4E-22 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS18755 a1d8a48fb179560cf933e05beac1ec08 473 Gene3D G3DSA:3.40.50.300 214 377 7.1E-39 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18755 a1d8a48fb179560cf933e05beac1ec08 473 Pfam PF00270 DEAD/DEAH box helicase 35 204 2.1E-49 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS18755 a1d8a48fb179560cf933e05beac1ec08 473 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 159 167 - T 26-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RGE_RS18755 a1d8a48fb179560cf933e05beac1ec08 473 Pfam PF00271 Helicase conserved C-terminal domain 247 346 1.2E-23 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS18755 a1d8a48fb179560cf933e05beac1ec08 473 Pfam PF03880 DbpA RNA binding domain 401 471 2.3E-20 T 26-04-2016 IPR005580 DbpA, RNA-binding domain RGE_RS07505 fed09f36cf5e2963e6a346a623257a06 70 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 1.2E-23 T 26-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RGE_RS07505 fed09f36cf5e2963e6a346a623257a06 70 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 26-04-2016 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS07505 fed09f36cf5e2963e6a346a623257a06 70 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.511 T 26-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RGE_RS07505 fed09f36cf5e2963e6a346a623257a06 70 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 4.6E-15 T 26-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RGE_RS07505 fed09f36cf5e2963e6a346a623257a06 70 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 4.6E-15 T 26-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RGE_RS07505 fed09f36cf5e2963e6a346a623257a06 70 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 4.6E-15 T 26-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RGE_RS07505 fed09f36cf5e2963e6a346a623257a06 70 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 4.6E-15 T 26-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RGE_RS07505 fed09f36cf5e2963e6a346a623257a06 70 PANTHER PTHR21109 1 59 4.8E-22 T 26-04-2016 RGE_RS07505 fed09f36cf5e2963e6a346a623257a06 70 Pfam PF01165 Ribosomal protein S21 3 57 1.5E-20 T 26-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RGE_RS07505 fed09f36cf5e2963e6a346a623257a06 70 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 42 9.0E-8 T 26-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RGE_RS07765 c582f88a5360270e0e030d7d428a298a 432 PIRSF PIRSF006066 1 432 5.4E-118 T 26-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RGE_RS07765 c582f88a5360270e0e030d7d428a298a 432 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 421 1.4E-92 T 26-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RGE_RS07765 c582f88a5360270e0e030d7d428a298a 432 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 427 6.6E-99 T 26-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RGE_RS07765 c582f88a5360270e0e030d7d428a298a 432 PANTHER PTHR33362 1 431 2.6E-97 T 26-04-2016 RGE_RS07765 c582f88a5360270e0e030d7d428a298a 432 PANTHER PTHR33362:SF2 1 431 2.6E-97 T 26-04-2016 RGE_RS09725 8581cf0594dcf8c04be660df0a25442e 633 Gene3D G3DSA:3.40.640.10 258 506 9.2E-88 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS09725 8581cf0594dcf8c04be660df0a25442e 633 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 439 458 - T 26-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RGE_RS09725 8581cf0594dcf8c04be660df0a25442e 633 SUPERFAMILY SSF53383 226 624 1.32E-122 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS09725 8581cf0594dcf8c04be660df0a25442e 633 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 229 623 1.2E-167 T 26-04-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RGE_RS09725 8581cf0594dcf8c04be660df0a25442e 633 PANTHER PTHR11601 228 622 5.6E-176 T 26-04-2016 RGE_RS09725 8581cf0594dcf8c04be660df0a25442e 633 Pfam PF00266 Aminotransferase class-V 247 616 1.1E-143 T 26-04-2016 IPR000192 Aminotransferase class V domain RGE_RS09725 8581cf0594dcf8c04be660df0a25442e 633 Gene3D G3DSA:3.90.1150.10 507 622 2.1E-26 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS09725 8581cf0594dcf8c04be660df0a25442e 633 PANTHER PTHR11601:SF17 228 622 5.6E-176 T 26-04-2016 RGE_RS10310 06c244358cbb2c15e0ae8af81aad7ce6 107 Gene3D G3DSA:3.30.70.20 4 91 6.0E-22 T 26-04-2016 RGE_RS10310 06c244358cbb2c15e0ae8af81aad7ce6 107 PANTHER PTHR11938 1 85 3.4E-41 T 26-04-2016 RGE_RS10310 06c244358cbb2c15e0ae8af81aad7ce6 107 SUPERFAMILY SSF54862 3 86 3.4E-24 T 26-04-2016 RGE_RS10310 06c244358cbb2c15e0ae8af81aad7ce6 107 Pfam PF11953 Domain of unknown function (DUF3470) 66 107 1.6E-14 T 26-04-2016 IPR022569 Ferredoxin, C-terminal RGE_RS10310 06c244358cbb2c15e0ae8af81aad7ce6 107 PANTHER PTHR11938:SF101 1 85 3.4E-41 T 26-04-2016 RGE_RS10310 06c244358cbb2c15e0ae8af81aad7ce6 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS10310 06c244358cbb2c15e0ae8af81aad7ce6 107 Pfam PF13187 4Fe-4S dicluster domain 9 55 7.3E-7 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS10310 06c244358cbb2c15e0ae8af81aad7ce6 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 3.4E-13 T 26-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RGE_RS10310 06c244358cbb2c15e0ae8af81aad7ce6 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 3.4E-13 T 26-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RGE_RS10310 06c244358cbb2c15e0ae8af81aad7ce6 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 3.4E-13 T 26-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RGE_RS21530 636eabb04d7297eec54cde64b35742aa 381 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 276 363 6.6E-20 T 26-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS21530 636eabb04d7297eec54cde64b35742aa 381 SMART SM00936 274 365 4.6E-28 T 26-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS21530 636eabb04d7297eec54cde64b35742aa 381 PANTHER PTHR21581 11 381 3.8E-96 T 26-04-2016 RGE_RS21530 636eabb04d7297eec54cde64b35742aa 381 PANTHER PTHR21581:SF3 11 381 3.8E-96 T 26-04-2016 RGE_RS21530 636eabb04d7297eec54cde64b35742aa 381 SUPERFAMILY SSF56601 4 272 1.44E-76 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS21530 636eabb04d7297eec54cde64b35742aa 381 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 21 253 2.0E-76 T 26-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RGE_RS21530 636eabb04d7297eec54cde64b35742aa 381 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 54 65 8.4E-18 T 26-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RGE_RS21530 636eabb04d7297eec54cde64b35742aa 381 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 110 127 8.4E-18 T 26-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RGE_RS21530 636eabb04d7297eec54cde64b35742aa 381 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 137 150 8.4E-18 T 26-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RGE_RS21530 636eabb04d7297eec54cde64b35742aa 381 Gene3D G3DSA:2.60.410.10 275 363 5.7E-23 T 26-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS21530 636eabb04d7297eec54cde64b35742aa 381 SUPERFAMILY SSF69189 274 367 6.08E-20 T 26-04-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS21530 636eabb04d7297eec54cde64b35742aa 381 Gene3D G3DSA:3.40.710.10 18 272 5.0E-95 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS20270 f564fe85f76714da4fa849a22b644da0 371 SUPERFAMILY SSF51735 2 351 5.63E-86 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20270 f564fe85f76714da4fa849a22b644da0 371 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 345 2.6E-160 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20270 f564fe85f76714da4fa849a22b644da0 371 PANTHER PTHR10366:SF32 4 282 6.5E-214 T 26-04-2016 RGE_RS20270 f564fe85f76714da4fa849a22b644da0 371 PANTHER PTHR10366:SF32 309 356 6.5E-214 T 26-04-2016 RGE_RS20270 f564fe85f76714da4fa849a22b644da0 371 Gene3D G3DSA:3.90.25.10 203 247 3.0E-53 T 26-04-2016 RGE_RS20270 f564fe85f76714da4fa849a22b644da0 371 Gene3D G3DSA:3.90.25.10 303 359 3.0E-53 T 26-04-2016 RGE_RS20270 f564fe85f76714da4fa849a22b644da0 371 Gene3D G3DSA:3.40.50.720 3 202 4.5E-44 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20270 f564fe85f76714da4fa849a22b644da0 371 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 355 57.158 T 26-04-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 RGE_RS20270 f564fe85f76714da4fa849a22b644da0 371 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 3 351 1.6E-178 T 26-04-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 RGE_RS20270 f564fe85f76714da4fa849a22b644da0 371 PANTHER PTHR10366 4 282 6.5E-214 T 26-04-2016 RGE_RS20270 f564fe85f76714da4fa849a22b644da0 371 PANTHER PTHR10366 309 356 6.5E-214 T 26-04-2016 RGE_RS21945 d6edcc043ae49fe8d84c863c924d3f20 256 PANTHER PTHR33973 10 250 1.3E-43 T 26-04-2016 RGE_RS21945 d6edcc043ae49fe8d84c863c924d3f20 256 Pfam PF07103 Protein of unknown function (DUF1365) 15 249 3.1E-67 T 26-04-2016 IPR010775 Protein of unknown function DUF1365 RGE_RS04410 a4060918ce52275b105a235083e263df 296 SUPERFAMILY SSF56281 46 268 2.52E-33 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS04410 a4060918ce52275b105a235083e263df 296 Pfam PF00753 Metallo-beta-lactamase superfamily 47 230 4.7E-8 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS04410 a4060918ce52275b105a235083e263df 296 PANTHER PTHR11935 48 295 1.7E-59 T 26-04-2016 RGE_RS04410 a4060918ce52275b105a235083e263df 296 SMART SM00849 43 230 3.8E-16 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS04410 a4060918ce52275b105a235083e263df 296 Gene3D G3DSA:3.60.15.10 47 258 3.5E-32 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS04410 a4060918ce52275b105a235083e263df 296 PANTHER PTHR11935:SF5 48 295 1.7E-59 T 26-04-2016 RGE_RS04410 a4060918ce52275b105a235083e263df 296 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 2 25 0.0013 T 26-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RGE_RS07465 bc4eae4bd2e594cc7b101109b477a956 196 Gene3D G3DSA:3.40.980.10 6 189 7.6E-51 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS07465 bc4eae4bd2e594cc7b101109b477a956 196 SMART SM00852 10 156 3.0E-26 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS07465 bc4eae4bd2e594cc7b101109b477a956 196 PANTHER PTHR10192 2 192 2.8E-83 T 26-04-2016 RGE_RS07465 bc4eae4bd2e594cc7b101109b477a956 196 SUPERFAMILY SSF53218 6 189 2.36E-47 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS07465 bc4eae4bd2e594cc7b101109b477a956 196 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 72 85 - T 26-04-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 RGE_RS07465 bc4eae4bd2e594cc7b101109b477a956 196 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 7 148 2.0E-37 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS07465 bc4eae4bd2e594cc7b101109b477a956 196 Pfam PF00994 Probable molybdopterin binding domain 11 149 1.8E-28 T 26-04-2016 IPR001453 MoaB/Mog domain RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 Gene3D G3DSA:3.90.190.20 316 468 1.8E-52 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 408 8.4E-19 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 PANTHER PTHR23135:SF5 1 458 4.2E-190 T 26-04-2016 RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 Gene3D G3DSA:3.40.1190.10 94 315 1.6E-76 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 Gene3D G3DSA:3.40.50.720 6 92 7.0E-35 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 Pfam PF01225 Mur ligase family, catalytic domain 7 105 1.6E-25 T 26-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 SUPERFAMILY SSF53623 91 311 2.49E-65 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 Pfam PF08245 Mur ligase middle domain 110 294 1.7E-24 T 26-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 SUPERFAMILY SSF53244 313 466 4.12E-45 T 26-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 SUPERFAMILY SSF51984 6 92 8.89E-29 T 26-04-2016 RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 PANTHER PTHR23135 1 458 4.2E-190 T 26-04-2016 RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 7 464 1.0E-158 T 26-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04690 91997958c99dffd53f1bdc4b65d7317d 474 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 5 470 41.804 T 26-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04650 9f81d400e86cf37c9a8c0d37639bbb91 96 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 1 84 2.2E-17 T 26-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 RGE_RS04650 9f81d400e86cf37c9a8c0d37639bbb91 96 Pfam PF04999 Cell division protein FtsL 4 84 1.4E-14 T 26-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 RGE_RS04650 9f81d400e86cf37c9a8c0d37639bbb91 96 Hamap MF_00910 Cell division protein FtsL [ftsL]. 1 84 12.813 T 26-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 RGE_RS12340 7c43995d4baa1be2e40824dcef191e74 277 Gene3D G3DSA:1.10.3720.10 72 270 2.0E-29 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12340 7c43995d4baa1be2e40824dcef191e74 277 PANTHER PTHR30151:SF0 27 274 9.4E-105 T 26-04-2016 RGE_RS12340 7c43995d4baa1be2e40824dcef191e74 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 268 1.8E-23 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12340 7c43995d4baa1be2e40824dcef191e74 277 SUPERFAMILY SSF161098 76 261 3.92E-36 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12340 7c43995d4baa1be2e40824dcef191e74 277 PANTHER PTHR30151 27 274 9.4E-105 T 26-04-2016 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 SMART SM00387 405 521 7.2E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 Gene3D G3DSA:3.40.50.2300 547 668 4.6E-37 T 26-04-2016 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 Pfam PF00072 Response regulator receiver domain 553 663 1.3E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 Pfam PF00072 Response regulator receiver domain 15 123 3.3E-11 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 405 520 8.8E-30 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 Gene3D G3DSA:3.30.565.10 360 524 6.8E-47 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 SMART SM00448 13 125 2.5E-6 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 SMART SM00448 551 664 1.4E-28 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 147 271 2.8E-18 T 26-04-2016 IPR000014 PAS domain RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 SUPERFAMILY SSF55874 348 517 3.8E-45 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 Gene3D G3DSA:3.30.450.20 145 262 6.1E-19 T 26-04-2016 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 Gene3D G3DSA:1.10.287.130 287 355 9.4E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 SUPERFAMILY SSF55785 138 262 1.92E-17 T 26-04-2016 IPR000014 PAS domain RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 518 1.1E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 499 1.1E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 460 1.1E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 PRINTS PR00344 Bacterial sensor protein C-terminal signature 464 474 1.1E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 SMART SM00091 150 215 2.9E-7 T 26-04-2016 IPR000014 PAS domain RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 Gene3D G3DSA:3.40.50.2300 14 144 4.9E-18 T 26-04-2016 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 Pfam PF08448 PAS fold 159 266 2.0E-12 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 PANTHER PTHR24423 131 669 8.0E-165 T 26-04-2016 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 SUPERFAMILY SSF47384 281 360 6.28E-21 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 SUPERFAMILY SSF52172 14 159 3.56E-21 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 SMART SM00388 295 359 2.4E-24 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 SUPERFAMILY SSF52172 549 669 1.85E-35 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 PANTHER PTHR24423:SF382 131 669 8.0E-165 T 26-04-2016 RGE_RS11085 4c5aaff4316eac7d37350f946e4d7a89 678 Pfam PF00512 His Kinase A (phospho-acceptor) domain 296 359 9.2E-21 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS09040 c8e8c44b633c0c61822eb7f691f8fbe4 310 Pfam PF03462 PCRF domain 2 164 2.1E-47 T 26-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RGE_RS09040 c8e8c44b633c0c61822eb7f691f8fbe4 310 Gene3D G3DSA:1.20.58.410 1 61 5.8E-10 T 26-04-2016 RGE_RS09040 c8e8c44b633c0c61822eb7f691f8fbe4 310 PANTHER PTHR11075:SF6 3 308 2.3E-141 T 26-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RGE_RS09040 c8e8c44b633c0c61822eb7f691f8fbe4 310 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 190 206 - T 26-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RGE_RS09040 c8e8c44b633c0c61822eb7f691f8fbe4 310 Gene3D G3DSA:3.30.160.20 173 250 5.8E-37 T 26-04-2016 IPR014720 Double-stranded RNA-binding domain RGE_RS09040 c8e8c44b633c0c61822eb7f691f8fbe4 310 PANTHER PTHR11075 3 308 2.3E-141 T 26-04-2016 RGE_RS09040 c8e8c44b633c0c61822eb7f691f8fbe4 310 SUPERFAMILY SSF75620 3 307 2.75E-122 T 26-04-2016 RGE_RS09040 c8e8c44b633c0c61822eb7f691f8fbe4 310 Pfam PF00472 RF-1 domain 174 282 1.1E-39 T 26-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RGE_RS09040 c8e8c44b633c0c61822eb7f691f8fbe4 310 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 3 308 2.8E-138 T 26-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RGE_RS09040 c8e8c44b633c0c61822eb7f691f8fbe4 310 SMART SM00937 30 140 8.2E-54 T 26-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RGE_RS23105 34d104b91720d40dea979d03ed5bc45b 964 SUPERFAMILY SSF53335 726 900 4.89E-16 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS23105 34d104b91720d40dea979d03ed5bc45b 964 Pfam PF00777 Glycosyltransferase family 29 (sialyltransferase) 354 399 3.0E-5 T 26-04-2016 IPR001675 Glycosyl transferase family 29 GO:0006486|GO:0008373 RGE_RS23105 34d104b91720d40dea979d03ed5bc45b 964 Pfam PF13489 Methyltransferase domain 758 897 3.5E-8 T 26-04-2016 RGE_RS23105 34d104b91720d40dea979d03ed5bc45b 964 Pfam PF08241 Methyltransferase domain 556 635 7.4E-10 T 26-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RGE_RS23105 34d104b91720d40dea979d03ed5bc45b 964 Gene3D G3DSA:3.40.50.150 543 636 1.7E-15 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS23105 34d104b91720d40dea979d03ed5bc45b 964 Gene3D G3DSA:3.40.50.150 749 898 1.6E-15 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS23105 34d104b91720d40dea979d03ed5bc45b 964 SUPERFAMILY SSF53335 542 644 7.21E-18 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS00045 1ad110baf755a10045acf7bd1626fffb 394 SUPERFAMILY SSF52200 181 263 3.53E-9 T 26-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 RGE_RS00045 1ad110baf755a10045acf7bd1626fffb 394 Pfam PF13676 TIR domain 183 268 4.0E-9 T 26-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 RGE_RS00045 1ad110baf755a10045acf7bd1626fffb 394 Gene3D G3DSA:3.40.50.10140 182 261 1.5E-5 T 26-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 1.5E-47 T 26-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 9 305 1.5E-109 T 26-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 PANTHER PTHR11405:SF1 8 305 2.0E-131 T 26-04-2016 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 9 149 4.6E-46 T 26-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 PANTHER PTHR11405 8 305 2.0E-131 T 26-04-2016 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 PRINTS PR00102 Ornithine carbamoyltransferase signature 125 139 2.2E-29 T 26-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 PRINTS PR00102 Ornithine carbamoyltransferase signature 222 232 2.2E-29 T 26-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 PRINTS PR00102 Ornithine carbamoyltransferase signature 284 295 2.2E-29 T 26-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 PRINTS PR00102 Ornithine carbamoyltransferase signature 85 98 2.2E-29 T 26-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 PRINTS PR00102 Ornithine carbamoyltransferase signature 52 66 2.2E-29 T 26-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 Gene3D G3DSA:3.40.50.1370 8 145 3.7E-54 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 Gene3D G3DSA:3.40.50.1370 146 292 1.8E-58 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 8 306 77.633 T 26-04-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 258 267 1.4E-27 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 136 147 1.4E-27 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 1.4E-27 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 54 73 1.4E-27 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 54 61 - T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS06535 421f14630c1d46b51973d0d9b3e3559e 310 SUPERFAMILY SSF53671 7 305 1.1E-101 T 26-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 166 1.0E-12 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 438 467 2.2E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 361 388 2.2E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 284 313 2.2E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 390 419 2.2E-55 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 Gene3D G3DSA:1.10.287.950 278 482 3.5E-60 T 26-04-2016 RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 PANTHER PTHR32089:SF63 94 513 2.9E-144 T 26-04-2016 RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 PANTHER PTHR32089 94 513 2.9E-144 T 26-04-2016 RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 Pfam PF00672 HAMP domain 191 258 3.4E-12 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 SUPERFAMILY SSF58104 230 511 3.27E-72 T 26-04-2016 RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 SMART SM00283 263 510 4.6E-89 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 SMART SM00304 210 262 1.3E-9 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS04470 f8edbd0956192b3648231c78dbe6ebad 584 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 319 509 2.7E-58 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03795 eba2edabeeca252a6a05c4d321b27935 309 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 293 4.3E-30 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS03795 eba2edabeeca252a6a05c4d321b27935 309 PANTHER PTHR11795:SF398 1 309 5.7E-61 T 26-04-2016 RGE_RS03795 eba2edabeeca252a6a05c4d321b27935 309 PANTHER PTHR11795 1 309 5.7E-61 T 26-04-2016 RGE_RS18510 26808d49c9f614c596d13b195ee42b8f 279 PANTHER PTHR32243:SF18 1 279 1.7E-99 T 26-04-2016 RGE_RS18510 26808d49c9f614c596d13b195ee42b8f 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 272 4.8E-15 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS18510 26808d49c9f614c596d13b195ee42b8f 279 Gene3D G3DSA:1.10.3720.10 3 265 3.7E-59 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS18510 26808d49c9f614c596d13b195ee42b8f 279 SUPERFAMILY SSF161098 4 279 3.55E-67 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS18510 26808d49c9f614c596d13b195ee42b8f 279 PANTHER PTHR32243 1 279 1.7E-99 T 26-04-2016 RGE_RS12300 cf6f7fe8cc8aaa2628e695eed5b1404b 742 PANTHER PTHR10342 294 349 6.4E-192 T 26-04-2016 RGE_RS12300 cf6f7fe8cc8aaa2628e695eed5b1404b 742 PANTHER PTHR10342 397 578 6.4E-192 T 26-04-2016 RGE_RS12300 cf6f7fe8cc8aaa2628e695eed5b1404b 742 PANTHER PTHR10342 15 261 6.4E-192 T 26-04-2016 RGE_RS12300 cf6f7fe8cc8aaa2628e695eed5b1404b 742 Gene3D G3DSA:3.40.720.10 41 480 6.3E-109 T 26-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RGE_RS12300 cf6f7fe8cc8aaa2628e695eed5b1404b 742 ProSitePatterns PS00523 Sulfatases signature 1. 87 99 - T 26-04-2016 IPR024607 Sulfatase, conserved site RGE_RS12300 cf6f7fe8cc8aaa2628e695eed5b1404b 742 ProSitePatterns PS00149 Sulfatases signature 2. 139 149 - T 26-04-2016 IPR024607 Sulfatase, conserved site RGE_RS12300 cf6f7fe8cc8aaa2628e695eed5b1404b 742 Gene3D G3DSA:3.30.1120.10 482 564 9.3E-25 T 26-04-2016 RGE_RS12300 cf6f7fe8cc8aaa2628e695eed5b1404b 742 PANTHER PTHR10342:SF201 294 349 6.4E-192 T 26-04-2016 RGE_RS12300 cf6f7fe8cc8aaa2628e695eed5b1404b 742 PANTHER PTHR10342:SF201 397 578 6.4E-192 T 26-04-2016 RGE_RS12300 cf6f7fe8cc8aaa2628e695eed5b1404b 742 PANTHER PTHR10342:SF201 15 261 6.4E-192 T 26-04-2016 RGE_RS12300 cf6f7fe8cc8aaa2628e695eed5b1404b 742 Pfam PF00884 Sulfatase 43 451 8.0E-82 T 26-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RGE_RS12300 cf6f7fe8cc8aaa2628e695eed5b1404b 742 SUPERFAMILY SSF53649 43 558 2.91E-135 T 26-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RGE_RS15460 220b6f938add542f710f23eecf05cc61 283 Gene3D G3DSA:3.20.20.370 5 269 3.1E-47 T 26-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RGE_RS15460 220b6f938add542f710f23eecf05cc61 283 Pfam PF04794 YdjC-like protein 6 263 6.6E-46 T 26-04-2016 IPR006879 Chitooligosaccharide deacetylase ChbG-like RGE_RS15460 220b6f938add542f710f23eecf05cc61 283 SUPERFAMILY SSF88713 5 269 9.12E-47 T 26-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RGE_RS15460 220b6f938add542f710f23eecf05cc61 283 PANTHER PTHR31609 1 270 4.0E-33 T 26-04-2016 RGE_RS21050 600819d7dcf92e16c2cf41bbffa3930b 96 PRINTS PR00297 10kDa chaperonin signature 3 18 3.0E-33 T 26-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RGE_RS21050 600819d7dcf92e16c2cf41bbffa3930b 96 PRINTS PR00297 10kDa chaperonin signature 60 72 3.0E-33 T 26-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RGE_RS21050 600819d7dcf92e16c2cf41bbffa3930b 96 PRINTS PR00297 10kDa chaperonin signature 81 94 3.0E-33 T 26-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RGE_RS21050 600819d7dcf92e16c2cf41bbffa3930b 96 PRINTS PR00297 10kDa chaperonin signature 25 46 3.0E-33 T 26-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RGE_RS21050 600819d7dcf92e16c2cf41bbffa3930b 96 Gene3D G3DSA:2.30.33.40 1 95 1.7E-38 T 26-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RGE_RS21050 600819d7dcf92e16c2cf41bbffa3930b 96 SMART SM00883 2 94 1.5E-57 T 26-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RGE_RS21050 600819d7dcf92e16c2cf41bbffa3930b 96 Pfam PF00166 Chaperonin 10 Kd subunit 2 94 9.8E-36 T 26-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RGE_RS21050 600819d7dcf92e16c2cf41bbffa3930b 96 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 26.87 T 26-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RGE_RS21050 600819d7dcf92e16c2cf41bbffa3930b 96 PANTHER PTHR10772 1 95 8.8E-43 T 26-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RGE_RS21050 600819d7dcf92e16c2cf41bbffa3930b 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 26-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RGE_RS21050 600819d7dcf92e16c2cf41bbffa3930b 96 SUPERFAMILY SSF50129 1 95 6.32E-35 T 26-04-2016 IPR011032 GroES-like RGE_RS03920 cda29a70124923c7abbe023d8a0391a4 321 Pfam PF03934 Type II secretion system (T2SS), protein K 33 301 3.6E-65 T 26-04-2016 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 RGE_RS03920 cda29a70124923c7abbe023d8a0391a4 321 SUPERFAMILY SSF54523 272 301 6.43E-5 T 26-04-2016 RGE_RS03920 cda29a70124923c7abbe023d8a0391a4 321 SUPERFAMILY SSF54523 47 118 6.43E-5 T 26-04-2016 RGE_RS03920 cda29a70124923c7abbe023d8a0391a4 321 SUPERFAMILY SSF158544 119 210 6.02E-7 T 26-04-2016 RGE_RS03920 cda29a70124923c7abbe023d8a0391a4 321 PIRSF PIRSF002786 3 314 8.9E-72 T 26-04-2016 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 RGE_RS17080 95cfcfe856a15aef0510877c720424a6 285 PANTHER PTHR30622:SF3 2 284 4.2E-116 T 26-04-2016 RGE_RS17080 95cfcfe856a15aef0510877c720424a6 285 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 276 17.113 T 26-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RGE_RS17080 95cfcfe856a15aef0510877c720424a6 285 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 269 6.6E-68 T 26-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RGE_RS17080 95cfcfe856a15aef0510877c720424a6 285 PANTHER PTHR30622 2 284 4.2E-116 T 26-04-2016 RGE_RS17080 95cfcfe856a15aef0510877c720424a6 285 Pfam PF02673 Bacitracin resistance protein BacA 9 270 3.7E-77 T 26-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RGE_RS08375 1ffa7713edeb61316a3ee9299d132adf 107 SUPERFAMILY SSF63592 1 101 4.58E-32 T 26-04-2016 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 RGE_RS08375 1ffa7713edeb61316a3ee9299d132adf 107 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 1 107 23.861 T 26-04-2016 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 RGE_RS08375 1ffa7713edeb61316a3ee9299d132adf 107 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 10 100 4.0E-31 T 26-04-2016 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 RGE_RS08375 1ffa7713edeb61316a3ee9299d132adf 107 Pfam PF05247 Flagellar transcriptional activator (FlhD) 1 105 1.1E-40 T 26-04-2016 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 RGE_RS02275 1b2a0a873f7c82cbee0711824ac28971 113 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 11 108 1.5E-26 T 26-04-2016 IPR008407 Branched-chain amino acid transport, AzlD RGE_RS03655 6dcb7ac7b005ac34b8182623a0f2bce0 301 PANTHER PTHR10992 31 301 1.7E-16 T 26-04-2016 RGE_RS03655 6dcb7ac7b005ac34b8182623a0f2bce0 301 SUPERFAMILY SSF53474 32 300 1.91E-31 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS03655 6dcb7ac7b005ac34b8182623a0f2bce0 301 Pfam PF12697 Alpha/beta hydrolase family 43 292 7.8E-10 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS03655 6dcb7ac7b005ac34b8182623a0f2bce0 301 Gene3D G3DSA:3.40.50.1820 33 301 7.5E-32 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS21140 a8df0d3ee273f7909e044c5a9ebd8aec 102 Pfam PF04341 Protein of unknown function, DUF485 11 97 1.9E-36 T 26-04-2016 IPR007436 Protein of unknown function DUF485 RGE_RS21140 a8df0d3ee273f7909e044c5a9ebd8aec 102 PANTHER PTHR38598 2 100 3.6E-38 T 26-04-2016 RGE_RS10410 81b72f7c3f2c063fb2f3c4daf45fdb70 171 PANTHER PTHR33337 7 160 2.9E-35 T 26-04-2016 RGE_RS10410 81b72f7c3f2c063fb2f3c4daf45fdb70 171 Gene3D G3DSA:3.90.1590.10 2 154 1.6E-44 T 26-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RGE_RS10410 81b72f7c3f2c063fb2f3c4daf45fdb70 171 SUPERFAMILY SSF51316 4 151 3.24E-42 T 26-04-2016 IPR011057 Mss4-like RGE_RS10410 81b72f7c3f2c063fb2f3c4daf45fdb70 171 PANTHER PTHR33337:SF10 7 160 2.9E-35 T 26-04-2016 RGE_RS10410 81b72f7c3f2c063fb2f3c4daf45fdb70 171 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 29 120 8.1E-21 T 26-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RGE_RS02555 bc48ce805971e1342956320e5794c808 163 SMART SM00344 9 118 1.4E-32 T 26-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RGE_RS02555 bc48ce805971e1342956320e5794c808 163 PANTHER PTHR30154 1 162 1.2E-50 T 26-04-2016 RGE_RS02555 bc48ce805971e1342956320e5794c808 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 36 55 1.2E-6 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS02555 bc48ce805971e1342956320e5794c808 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 9 25 1.2E-6 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS02555 bc48ce805971e1342956320e5794c808 163 SUPERFAMILY SSF54909 70 151 5.23E-13 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS02555 bc48ce805971e1342956320e5794c808 163 Gene3D G3DSA:1.10.10.10 7 60 5.8E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02555 bc48ce805971e1342956320e5794c808 163 Pfam PF13412 Winged helix-turn-helix DNA-binding 9 56 2.3E-14 T 26-04-2016 RGE_RS02555 bc48ce805971e1342956320e5794c808 163 Gene3D G3DSA:3.30.70.920 62 146 4.9E-22 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS02555 bc48ce805971e1342956320e5794c808 163 PANTHER PTHR30154:SF28 1 162 1.2E-50 T 26-04-2016 RGE_RS02555 bc48ce805971e1342956320e5794c808 163 Pfam PF01037 Lrp/AsnC ligand binding domain 75 148 3.3E-14 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS02555 bc48ce805971e1342956320e5794c808 163 SUPERFAMILY SSF46785 6 94 3.25E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11935 f62164423ec951f277cfa07ff836657c 506 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 29 502 1.7E-182 T 26-04-2016 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 UniPathway: UPA00637 RGE_RS11935 f62164423ec951f277cfa07ff836657c 506 PANTHER PTHR30504 4 505 2.9E-180 T 26-04-2016 RGE_RS11935 f62164423ec951f277cfa07ff836657c 506 SUPERFAMILY SSF81296 397 505 2.52E-27 T 26-04-2016 IPR014756 Immunoglobulin E-set RGE_RS11935 f62164423ec951f277cfa07ff836657c 506 SUPERFAMILY SSF74650 29 396 1.79E-144 T 26-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 RGE_RS11935 f62164423ec951f277cfa07ff836657c 506 PIRSF PIRSF006281 2 506 1.1E-181 T 26-04-2016 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D UniPathway: UPA00637 RGE_RS11935 f62164423ec951f277cfa07ff836657c 506 Gene3D G3DSA:2.60.40.10 399 505 4.7E-31 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS11935 f62164423ec951f277cfa07ff836657c 506 Gene3D G3DSA:2.70.98.10 28 397 1.4E-150 T 26-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 RGE_RS00785 19ef082bf86a4670c14506d0193d7d7e 136 SUPERFAMILY SSF53850 18 132 9.77E-10 T 26-04-2016 RGE_RS00785 19ef082bf86a4670c14506d0193d7d7e 136 Gene3D G3DSA:3.40.190.10 23 133 6.9E-6 T 26-04-2016 RGE_RS20745 ff1e3e473882c33b4760fe0820b1975b 103 SUPERFAMILY SSF141091 1 102 3.66E-37 T 26-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 RGE_RS20745 ff1e3e473882c33b4760fe0820b1975b 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 9.2E-36 T 26-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS20745 ff1e3e473882c33b4760fe0820b1975b 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 3.8E-39 T 26-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 RGE_RS20745 ff1e3e473882c33b4760fe0820b1975b 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 26-04-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS20745 ff1e3e473882c33b4760fe0820b1975b 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 26.415 T 26-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS20745 ff1e3e473882c33b4760fe0820b1975b 103 PANTHER PTHR21349 1 98 2.0E-40 T 26-04-2016 RGE_RS15190 7087d547abbffa4b01f76dcad2438a19 301 Gene3D G3DSA:3.40.50.300 97 249 9.0E-18 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15190 7087d547abbffa4b01f76dcad2438a19 301 Gene3D G3DSA:3.40.50.300 5 45 9.0E-18 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15190 7087d547abbffa4b01f76dcad2438a19 301 SUPERFAMILY SSF52540 4 37 3.57E-24 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15190 7087d547abbffa4b01f76dcad2438a19 301 SUPERFAMILY SSF52540 107 246 3.57E-24 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15190 7087d547abbffa4b01f76dcad2438a19 301 Pfam PF13469 Sulfotransferase family 4 227 4.5E-32 T 26-04-2016 RGE_RS16140 bb3ef37f938cfb87c5179dd8525e96a0 235 PANTHER PTHR10010 1 228 2.7E-62 T 26-04-2016 RGE_RS16140 bb3ef37f938cfb87c5179dd8525e96a0 235 Pfam PF01895 PhoU domain 132 212 8.3E-15 T 26-04-2016 IPR026022 PhoU domain RGE_RS16140 bb3ef37f938cfb87c5179dd8525e96a0 235 Pfam PF01895 PhoU domain 22 108 1.3E-18 T 26-04-2016 IPR026022 PhoU domain RGE_RS16140 bb3ef37f938cfb87c5179dd8525e96a0 235 PIRSF PIRSF003107 3 227 2.6E-56 T 26-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RGE_RS16140 bb3ef37f938cfb87c5179dd8525e96a0 235 PANTHER PTHR10010:SF14 1 228 2.7E-62 T 26-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RGE_RS16140 bb3ef37f938cfb87c5179dd8525e96a0 235 SUPERFAMILY SSF109755 8 230 1.26E-64 T 26-04-2016 RGE_RS16140 bb3ef37f938cfb87c5179dd8525e96a0 235 Gene3D G3DSA:1.20.58.220 133 233 7.5E-30 T 26-04-2016 RGE_RS16140 bb3ef37f938cfb87c5179dd8525e96a0 235 Gene3D G3DSA:1.20.58.220 5 115 2.6E-30 T 26-04-2016 RGE_RS16140 bb3ef37f938cfb87c5179dd8525e96a0 235 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 8 222 5.7E-63 T 26-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RGE_RS00455 5692048892fe5de37d89537bca76fab0 489 PANTHER PTHR33693 145 484 5.4E-127 T 26-04-2016 RGE_RS00455 5692048892fe5de37d89537bca76fab0 489 SMART SM00987 318 473 6.0E-39 T 26-04-2016 RGE_RS00455 5692048892fe5de37d89537bca76fab0 489 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 304 469 1.2E-40 T 26-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain RGE_RS00455 5692048892fe5de37d89537bca76fab0 489 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 8 240 4.2E-59 T 26-04-2016 IPR023875 DNA metabolism protein, putative RGE_RS00455 5692048892fe5de37d89537bca76fab0 489 PANTHER PTHR33693:SF3 145 484 5.4E-127 T 26-04-2016 RGE_RS00455 5692048892fe5de37d89537bca76fab0 489 Pfam PF03167 Uracil DNA glycosylase superfamily 318 472 4.5E-39 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS00455 5692048892fe5de37d89537bca76fab0 489 TIGRFAM TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain 242 478 2.3E-84 T 26-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain RGE_RS00455 5692048892fe5de37d89537bca76fab0 489 Gene3D G3DSA:3.40.470.10 294 481 9.6E-61 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS00455 5692048892fe5de37d89537bca76fab0 489 SUPERFAMILY SSF52141 294 471 1.24E-51 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS00455 5692048892fe5de37d89537bca76fab0 489 SMART SM00986 318 473 6.0E-39 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS00455 5692048892fe5de37d89537bca76fab0 489 Pfam PF13566 Domain of unknown function (DUF4130 81 239 1.9E-35 T 26-04-2016 IPR025404 Domain of unknown function DUF4130 RGE_RS12505 3a21e32f44bc1ae48b217ed4ff72652a 356 PANTHER PTHR35564:SF2 4 348 1.1E-49 T 26-04-2016 RGE_RS12505 3a21e32f44bc1ae48b217ed4ff72652a 356 PANTHER PTHR35564 4 348 1.1E-49 T 26-04-2016 RGE_RS12505 3a21e32f44bc1ae48b217ed4ff72652a 356 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 19 336 2.1E-93 T 26-04-2016 IPR010732 Type VI secretion, TssG-like RGE_RS12505 3a21e32f44bc1ae48b217ed4ff72652a 356 Pfam PF06996 Type VI secretion, VasB, ImpH, VC_A0111 19 336 6.2E-90 T 26-04-2016 IPR010732 Type VI secretion, TssG-like RGE_RS01480 3fb30d9708cbbf41d4d934027b0f311b 223 PANTHER PTHR18901 6 222 2.6E-54 T 26-04-2016 RGE_RS01480 3fb30d9708cbbf41d4d934027b0f311b 223 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 107 187 1.9E-9 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS01480 3fb30d9708cbbf41d4d934027b0f311b 223 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 64 193 1.5E-12 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS01480 3fb30d9708cbbf41d4d934027b0f311b 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 182 195 7.7E-8 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS01480 3fb30d9708cbbf41d4d934027b0f311b 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 7.7E-8 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS01480 3fb30d9708cbbf41d4d934027b0f311b 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 7.7E-8 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS01480 3fb30d9708cbbf41d4d934027b0f311b 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 7.7E-8 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS01480 3fb30d9708cbbf41d4d934027b0f311b 223 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 13 222 1.1E-62 T 26-04-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 RGE_RS01480 3fb30d9708cbbf41d4d934027b0f311b 223 SUPERFAMILY SSF56784 9 222 4.88E-60 T 26-04-2016 IPR023214 HAD-like domain RGE_RS01480 3fb30d9708cbbf41d4d934027b0f311b 223 Gene3D G3DSA:1.10.150.240 26 81 1.1E-8 T 26-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RGE_RS01480 3fb30d9708cbbf41d4d934027b0f311b 223 Gene3D G3DSA:3.40.50.1000 82 222 6.2E-46 T 26-04-2016 IPR023214 HAD-like domain RGE_RS01480 3fb30d9708cbbf41d4d934027b0f311b 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 193 4.7E-32 T 26-04-2016 IPR023214 HAD-like domain RGE_RS20070 e848cf41cb2f622dc64a1ee5414a2611 79 SUPERFAMILY SSF47336 1 77 3.53E-23 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS20070 e848cf41cb2f622dc64a1ee5414a2611 79 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 1.0E-10 T 26-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RGE_RS20070 e848cf41cb2f622dc64a1ee5414a2611 79 Gene3D G3DSA:1.10.1200.10 3 76 8.6E-34 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS20070 e848cf41cb2f622dc64a1ee5414a2611 79 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 26-04-2016 IPR006162 Phosphopantetheine attachment site RGE_RS20070 e848cf41cb2f622dc64a1ee5414a2611 79 Pfam PF00550 Phosphopantetheine attachment site 7 68 1.9E-16 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS20070 e848cf41cb2f622dc64a1ee5414a2611 79 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 73 1.0E-33 T 26-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RGE_RS20070 e848cf41cb2f622dc64a1ee5414a2611 79 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 21.553 T 26-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RGE_RS20070 e848cf41cb2f622dc64a1ee5414a2611 79 SMART SM00823 Phosphopantetheine attachment site 5 63 0.0012 T 26-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 RGE_RS20070 e848cf41cb2f622dc64a1ee5414a2611 79 PANTHER PTHR20863 3 73 2.6E-29 T 26-04-2016 RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 567 580 9.3E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 543 561 9.3E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 508 522 9.3E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 PRINTS PR00344 Bacterial sensor protein C-terminal signature 526 536 9.3E-16 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 SUPERFAMILY SSF55874 415 583 3.54E-48 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 Gene3D G3DSA:1.10.287.130 353 421 5.9E-19 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 SUPERFAMILY SSF47384 347 426 1.92E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 Pfam PF00512 His Kinase A (phospho-acceptor) domain 360 425 1.9E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 PANTHER PTHR24423 168 210 4.0E-87 T 26-04-2016 RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 PANTHER PTHR24423 339 584 4.0E-87 T 26-04-2016 RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 PANTHER PTHR24423 7 18 4.0E-87 T 26-04-2016 RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 SMART SM00387 472 583 9.7E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 Gene3D G3DSA:3.30.565.10 426 586 2.2E-46 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 473 580 2.0E-25 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS03610 7835d9b98908c410d2524e83be60ad94 598 SMART SM00388 360 425 7.5E-21 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 Pfam PF00873 AcrB/AcrD/AcrF family 4 1004 7.6E-246 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 SUPERFAMILY SSF82693 42 134 5.23E-23 T 26-04-2016 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 SUPERFAMILY SSF82693 267 321 2.27E-16 T 26-04-2016 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 SUPERFAMILY SSF82693 135 181 2.27E-16 T 26-04-2016 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 SUPERFAMILY SSF82866 787 1004 1.24E-49 T 26-04-2016 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 PANTHER PTHR32063 1 1052 0.0 T 26-04-2016 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 SUPERFAMILY SSF82866 290 489 2.09E-48 T 26-04-2016 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 Gene3D G3DSA:3.30.2090.10 182 265 2.1E-15 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 SUPERFAMILY SSF82714 702 788 4.32E-13 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 Gene3D G3DSA:1.10.3850.10 793 1006 1.1E-62 T 26-04-2016 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 Gene3D G3DSA:1.20.1640.10 285 495 3.6E-57 T 26-04-2016 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 SUPERFAMILY SSF82714 183 265 4.05E-13 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 8.8E-55 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 8.8E-55 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 PRINTS PR00702 Acriflavin resistance protein family signature 548 565 8.8E-55 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 8.8E-55 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 8.8E-55 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 8.8E-55 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 8.8E-55 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 PRINTS PR00702 Acriflavin resistance protein family signature 608 622 8.8E-55 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 8.8E-55 T 26-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 Gene3D G3DSA:3.30.2090.10 701 790 1.3E-12 T 26-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 SUPERFAMILY SSF82693 562 647 8.89E-5 T 26-04-2016 RGE_RS10655 f18943245b89ce3fcbb8552e2074bb05 1058 Gene3D G3DSA:3.30.70.1430 42 140 2.3E-27 T 26-04-2016 RGE_RS09495 f883b316a8f7337fd1eda61177c4e2a2 303 SUPERFAMILY SSF64518 1 302 5.1E-72 T 26-04-2016 RGE_RS09495 f883b316a8f7337fd1eda61177c4e2a2 303 PANTHER PTHR30244 2 302 2.1E-89 T 26-04-2016 RGE_RS09495 f883b316a8f7337fd1eda61177c4e2a2 303 PANTHER PTHR30244:SF1 2 302 2.1E-89 T 26-04-2016 RGE_RS09495 f883b316a8f7337fd1eda61177c4e2a2 303 Gene3D G3DSA:1.20.1330.10 54 258 5.8E-45 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS09495 f883b316a8f7337fd1eda61177c4e2a2 303 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 138 4.0E-34 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS09495 f883b316a8f7337fd1eda61177c4e2a2 303 Pfam PF00700 Bacterial flagellin C-terminal helical region 217 302 1.7E-22 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS09495 f883b316a8f7337fd1eda61177c4e2a2 303 PRINTS PR00207 Flagellin signature 75 94 2.5E-18 T 26-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RGE_RS09495 f883b316a8f7337fd1eda61177c4e2a2 303 PRINTS PR00207 Flagellin signature 36 53 2.5E-18 T 26-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RGE_RS09495 f883b316a8f7337fd1eda61177c4e2a2 303 PRINTS PR00207 Flagellin signature 110 133 2.5E-18 T 26-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RGE_RS19655 e453a71b284e63b4b5a92e0cc5f27586 333 SUPERFAMILY SSF56199 15 329 3.92E-110 T 26-04-2016 RGE_RS19655 e453a71b284e63b4b5a92e0cc5f27586 333 Gene3D G3DSA:3.10.340.11 105 184 6.0E-33 T 26-04-2016 RGE_RS19655 e453a71b284e63b4b5a92e0cc5f27586 333 Gene3D G3DSA:3.10.340.11 15 56 6.0E-33 T 26-04-2016 RGE_RS19655 e453a71b284e63b4b5a92e0cc5f27586 333 Pfam PF02289 Cyclohydrolase (MCH) 16 327 1.4E-119 T 26-04-2016 IPR003209 Methenyltetrahydromethanopterin cyclohydrolase GO:0006730|GO:0018759 KEGG: 00680+3.5.4.27|MetaCyc: PWY-1723 RGE_RS19655 e453a71b284e63b4b5a92e0cc5f27586 333 TIGRFAM TIGR03120 one_C_mch: methenyltetrahydromethanopterin cyclohydrolase 16 327 3.5E-107 T 26-04-2016 IPR003209 Methenyltetrahydromethanopterin cyclohydrolase GO:0006730|GO:0018759 KEGG: 00680+3.5.4.27|MetaCyc: PWY-1723 RGE_RS19655 e453a71b284e63b4b5a92e0cc5f27586 333 Hamap MF_00486 Methenyltetrahydromethanopterin cyclohydrolase [mch]. 1 333 128.038 T 26-04-2016 IPR003209 Methenyltetrahydromethanopterin cyclohydrolase GO:0006730|GO:0018759 KEGG: 00680+3.5.4.27|MetaCyc: PWY-1723 RGE_RS19655 e453a71b284e63b4b5a92e0cc5f27586 333 Gene3D G3DSA:3.30.1030.10 185 329 1.2E-75 T 26-04-2016 RGE_RS19655 e453a71b284e63b4b5a92e0cc5f27586 333 Gene3D G3DSA:3.30.1030.10 57 104 1.2E-75 T 26-04-2016 RGE_RS17380 a5f9be45b09cd08a17feff254a24e7e0 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 26-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RGE_RS17380 a5f9be45b09cd08a17feff254a24e7e0 506 Pfam PF00171 Aldehyde dehydrogenase family 30 493 1.9E-162 T 26-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RGE_RS17380 a5f9be45b09cd08a17feff254a24e7e0 506 SUPERFAMILY SSF53720 11 499 1.7E-162 T 26-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RGE_RS17380 a5f9be45b09cd08a17feff254a24e7e0 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 26-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RGE_RS17380 a5f9be45b09cd08a17feff254a24e7e0 506 Gene3D G3DSA:3.40.309.10 271 469 9.2E-60 T 26-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RGE_RS17380 a5f9be45b09cd08a17feff254a24e7e0 506 Gene3D G3DSA:3.40.605.10 18 270 5.7E-92 T 26-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RGE_RS17380 a5f9be45b09cd08a17feff254a24e7e0 506 PANTHER PTHR11699 1 506 0.0 T 26-04-2016 RGE_RS17380 a5f9be45b09cd08a17feff254a24e7e0 506 PANTHER PTHR11699:SF97 1 506 0.0 T 26-04-2016 RGE_RS09485 e660d3e4bc0f93a12447742ec46b0fd2 164 SUPERFAMILY SSF54637 4 151 6.31E-44 T 26-04-2016 IPR029069 HotDog domain RGE_RS09485 e660d3e4bc0f93a12447742ec46b0fd2 164 Gene3D G3DSA:3.10.129.10 6 152 2.5E-54 T 26-04-2016 IPR029069 HotDog domain RGE_RS09485 e660d3e4bc0f93a12447742ec46b0fd2 164 Pfam PF03061 Thioesterase superfamily 23 96 2.4E-16 T 26-04-2016 IPR006683 Thioesterase domain RGE_RS09485 e660d3e4bc0f93a12447742ec46b0fd2 164 PANTHER PTHR11049 7 158 1.6E-63 T 26-04-2016 RGE_RS09645 c84dce9b1cf4b8e10c86279c0501e436 227 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 90 218 2.8E-32 T 26-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RGE_RS09645 c84dce9b1cf4b8e10c86279c0501e436 227 PANTHER PTHR36307 1 218 4.2E-26 T 26-04-2016 RGE_RS09645 c84dce9b1cf4b8e10c86279c0501e436 227 SMART SM00858 97 158 2.1E-6 T 26-04-2016 IPR013974 SAF domain RGE_RS09645 c84dce9b1cf4b8e10c86279c0501e436 227 Pfam PF13144 Chaperone for flagella basal body P-ring formation 22 218 2.2E-37 T 26-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RGE_RS18075 3aca085634fef870ccd22fdfb855ec52 154 SUPERFAMILY SSF110087 4 122 3.53E-19 T 26-04-2016 IPR007410 DR1885-like metal-binding protein RGE_RS18075 3aca085634fef870ccd22fdfb855ec52 154 Pfam PF04314 Protein of unknown function (DUF461) 31 120 1.7E-10 T 26-04-2016 IPR007410 DR1885-like metal-binding protein RGE_RS04920 385f075757e67accaa42d036e3ee7565 352 SUPERFAMILY SSF56931 85 350 2.48E-80 T 26-04-2016 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 RGE_RS04920 385f075757e67accaa42d036e3ee7565 352 PRINTS PR01486 Bacterial phospholipase A1 protein signature 155 171 1.2E-26 T 26-04-2016 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 RGE_RS04920 385f075757e67accaa42d036e3ee7565 352 PRINTS PR01486 Bacterial phospholipase A1 protein signature 133 150 1.2E-26 T 26-04-2016 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 RGE_RS04920 385f075757e67accaa42d036e3ee7565 352 PRINTS PR01486 Bacterial phospholipase A1 protein signature 178 197 1.2E-26 T 26-04-2016 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 RGE_RS04920 385f075757e67accaa42d036e3ee7565 352 PRINTS PR01486 Bacterial phospholipase A1 protein signature 322 342 1.2E-26 T 26-04-2016 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 RGE_RS04920 385f075757e67accaa42d036e3ee7565 352 PRINTS PR01486 Bacterial phospholipase A1 protein signature 227 245 1.2E-26 T 26-04-2016 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 RGE_RS04920 385f075757e67accaa42d036e3ee7565 352 PRINTS PR01486 Bacterial phospholipase A1 protein signature 262 280 1.2E-26 T 26-04-2016 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 RGE_RS04920 385f075757e67accaa42d036e3ee7565 352 Gene3D G3DSA:2.40.230.10 82 351 9.5E-86 T 26-04-2016 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 RGE_RS04920 385f075757e67accaa42d036e3ee7565 352 Pfam PF02253 Phospholipase A1 83 349 1.2E-92 T 26-04-2016 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 RGE_RS04920 385f075757e67accaa42d036e3ee7565 352 PANTHER PTHR40457 75 352 1.7E-67 T 26-04-2016 RGE_RS16150 714727d17cdb30f57494bc3de7314e4a 276 Gene3D G3DSA:1.10.3720.10 6 274 2.8E-34 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS16150 714727d17cdb30f57494bc3de7314e4a 276 SUPERFAMILY SSF161098 16 266 6.17E-30 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS16150 714727d17cdb30f57494bc3de7314e4a 276 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 11 274 1.6E-79 T 26-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 RGE_RS16150 714727d17cdb30f57494bc3de7314e4a 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 273 3.4E-22 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS16150 714727d17cdb30f57494bc3de7314e4a 276 PANTHER PTHR30425:SF0 1 276 1.7E-110 T 26-04-2016 RGE_RS16150 714727d17cdb30f57494bc3de7314e4a 276 PANTHER PTHR30425 1 276 1.7E-110 T 26-04-2016 RGE_RS20480 68440e71f8a1b78094f62172783bce0c 136 Gene3D G3DSA:3.30.420.140 12 132 2.9E-35 T 26-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RGE_RS20480 68440e71f8a1b78094f62172783bce0c 136 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 11 135 20.595 T 26-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RGE_RS20480 68440e71f8a1b78094f62172783bce0c 136 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 14 111 2.6E-26 T 26-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RGE_RS20480 68440e71f8a1b78094f62172783bce0c 136 Pfam PF03652 Holliday junction resolvase 13 132 7.2E-32 T 26-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RGE_RS20480 68440e71f8a1b78094f62172783bce0c 136 PANTHER PTHR33317 13 131 9.5E-24 T 26-04-2016 RGE_RS20480 68440e71f8a1b78094f62172783bce0c 136 SUPERFAMILY SSF53098 12 132 1.82E-31 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS20480 68440e71f8a1b78094f62172783bce0c 136 SMART SM00732 11 110 1.0E-27 T 26-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RGE_RS15775 5d2f876a3cdac7e1e7bce6fc618ca3ad 278 SUPERFAMILY SSF46689 239 274 3.27E-5 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS15775 5d2f876a3cdac7e1e7bce6fc618ca3ad 278 Pfam PF02311 AraC-like ligand binding domain 41 106 5.1E-7 T 26-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RGE_RS15775 5d2f876a3cdac7e1e7bce6fc618ca3ad 278 SUPERFAMILY SSF51182 23 202 3.43E-16 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS15775 5d2f876a3cdac7e1e7bce6fc618ca3ad 278 Gene3D G3DSA:1.10.10.60 239 274 3.7E-7 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS15775 5d2f876a3cdac7e1e7bce6fc618ca3ad 278 PANTHER PTHR11019:SF99 7 274 6.2E-55 T 26-04-2016 RGE_RS15775 5d2f876a3cdac7e1e7bce6fc618ca3ad 278 Gene3D G3DSA:1.10.10.60 174 229 1.7E-8 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS15775 5d2f876a3cdac7e1e7bce6fc618ca3ad 278 PANTHER PTHR11019 7 274 6.2E-55 T 26-04-2016 RGE_RS15775 5d2f876a3cdac7e1e7bce6fc618ca3ad 278 Pfam PF12833 Helix-turn-helix domain 199 276 4.1E-19 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS15775 5d2f876a3cdac7e1e7bce6fc618ca3ad 278 SMART SM00342 193 275 3.3E-18 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS15775 5d2f876a3cdac7e1e7bce6fc618ca3ad 278 Gene3D G3DSA:2.60.120.10 24 102 1.4E-10 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS18975 e0c7d593c788fa63f83106feee53d9e0 618 SMART SM00382 385 576 5.6E-20 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS18975 e0c7d593c788fa63f83106feee53d9e0 618 ProSitePatterns PS00211 ABC transporters family signature. 502 516 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS18975 e0c7d593c788fa63f83106feee53d9e0 618 Gene3D G3DSA:1.20.1560.10 28 348 2.2E-32 T 26-04-2016 RGE_RS18975 e0c7d593c788fa63f83106feee53d9e0 618 SUPERFAMILY SSF52540 350 600 1.38E-86 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18975 e0c7d593c788fa63f83106feee53d9e0 618 SUPERFAMILY SSF90123 21 338 6.28E-46 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS18975 e0c7d593c788fa63f83106feee53d9e0 618 Pfam PF00005 ABC transporter 376 530 1.6E-32 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS18975 e0c7d593c788fa63f83106feee53d9e0 618 Gene3D G3DSA:3.40.50.300 360 594 6.7E-79 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18975 e0c7d593c788fa63f83106feee53d9e0 618 PANTHER PTHR24221 2 609 0.0 T 26-04-2016 RGE_RS18975 e0c7d593c788fa63f83106feee53d9e0 618 Pfam PF00664 ABC transporter transmembrane region 41 305 4.2E-13 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS18975 e0c7d593c788fa63f83106feee53d9e0 618 PANTHER PTHR24221:SF203 2 609 0.0 T 26-04-2016 RGE_RS13835 dc784d88f6c984d0838748780f6a2da0 252 SUPERFAMILY SSF88713 27 206 1.83E-42 T 26-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RGE_RS13835 dc784d88f6c984d0838748780f6a2da0 252 Gene3D G3DSA:3.20.20.370 39 201 1.6E-32 T 26-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RGE_RS13835 dc784d88f6c984d0838748780f6a2da0 252 PANTHER PTHR34216 8 235 1.2E-52 T 26-04-2016 RGE_RS13835 dc784d88f6c984d0838748780f6a2da0 252 Pfam PF01522 Polysaccharide deacetylase 64 198 7.6E-32 T 26-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 Gene3D G3DSA:3.30.43.10 154 313 2.3E-31 T 26-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 SUPERFAMILY SSF56176 163 425 4.53E-51 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 SUPERFAMILY SSF46548 814 935 4.45E-13 T 26-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 Pfam PF02913 FAD linked oxidases, C-terminal domain 456 582 1.2E-5 T 26-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 Pfam PF02913 FAD linked oxidases, C-terminal domain 693 796 8.5E-19 T 26-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 PANTHER PTHR11748 594 796 2.4E-30 T 26-04-2016 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 PANTHER PTHR11748 408 484 2.4E-30 T 26-04-2016 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 PANTHER PTHR11748 170 349 2.4E-30 T 26-04-2016 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 Pfam PF02754 Cysteine-rich domain 1174 1262 4.6E-4 T 26-04-2016 IPR004017 Cysteine-rich domain RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 Pfam PF02754 Cysteine-rich domain 1049 1138 7.5E-7 T 26-04-2016 IPR004017 Cysteine-rich domain RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 Gene3D G3DSA:1.10.1060.10 837 935 9.9E-13 T 26-04-2016 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 904 915 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 Pfam PF01565 FAD binding domain 197 341 6.3E-21 T 26-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 Pfam PF13183 4Fe-4S dicluster domain 840 918 1.6E-6 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 Pfam PF11880 Domain of unknown function (DUF3400) 1265 1312 4.0E-22 T 26-04-2016 IPR021817 Protein of unknown function DUF3400 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 Pfam PF12447 Protein of unknown function (DUF3683) 31 147 1.3E-50 T 26-04-2016 IPR022153 Protein of unknown function DUF3683 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 SUPERFAMILY SSF55103 716 796 2.8E-39 T 26-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RGE_RS05210 8168138fc93a7a7a494ec7e956e643f1 1312 SUPERFAMILY SSF55103 455 594 2.8E-39 T 26-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RGE_RS12825 5d49169459c8f3e7c8c3779f0bb21c6f 363 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 10 358 35.852 T 26-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RGE_RS12825 5d49169459c8f3e7c8c3779f0bb21c6f 363 Gene3D G3DSA:1.20.120.420 15 161 8.1E-45 T 26-04-2016 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RGE_RS12825 5d49169459c8f3e7c8c3779f0bb21c6f 363 Pfam PF01008 Initiation factor 2 subunit family 53 348 2.1E-55 T 26-04-2016 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RGE_RS12825 5d49169459c8f3e7c8c3779f0bb21c6f 363 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 18 347 3.0E-123 T 26-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RGE_RS12825 5d49169459c8f3e7c8c3779f0bb21c6f 363 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 39 348 9.7E-86 T 26-04-2016 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RGE_RS12825 5d49169459c8f3e7c8c3779f0bb21c6f 363 Gene3D G3DSA:3.40.50.10470 162 351 1.1E-60 T 26-04-2016 RGE_RS12825 5d49169459c8f3e7c8c3779f0bb21c6f 363 PANTHER PTHR10233 17 351 2.3E-128 T 26-04-2016 RGE_RS12825 5d49169459c8f3e7c8c3779f0bb21c6f 363 SUPERFAMILY SSF100950 16 351 5.58E-109 T 26-04-2016 RGE_RS12825 5d49169459c8f3e7c8c3779f0bb21c6f 363 PANTHER PTHR10233:SF6 17 351 2.3E-128 T 26-04-2016 RGE_RS03965 4e25c8fb5125d40449b58dcdbc55e5d2 213 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 12 213 31.085 T 26-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 RGE_RS03965 4e25c8fb5125d40449b58dcdbc55e5d2 213 SUPERFAMILY SSF47240 52 186 2.55E-16 T 26-04-2016 IPR009078 Ferritin-like superfamily RGE_RS03965 4e25c8fb5125d40449b58dcdbc55e5d2 213 PANTHER PTHR11237:SF3 3 213 1.3E-94 T 26-04-2016 RGE_RS03965 4e25c8fb5125d40449b58dcdbc55e5d2 213 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 53 211 1.6E-40 T 26-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 RGE_RS03965 4e25c8fb5125d40449b58dcdbc55e5d2 213 PANTHER PTHR11237 3 213 1.3E-94 T 26-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 RGE_RS03965 4e25c8fb5125d40449b58dcdbc55e5d2 213 Gene3D G3DSA:1.20.1260.10 61 182 3.0E-9 T 26-04-2016 IPR012347 Ferritin-related RGE_RS10080 c5068b51bd44179ffd189c6eb19484d0 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 228 3.4E-22 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS10080 c5068b51bd44179ffd189c6eb19484d0 232 PANTHER PTHR26402 6 229 2.6E-91 T 26-04-2016 RGE_RS10080 c5068b51bd44179ffd189c6eb19484d0 232 Gene3D G3DSA:1.10.10.10 130 230 1.3E-31 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10080 c5068b51bd44179ffd189c6eb19484d0 232 Pfam PF00072 Response regulator receiver domain 8 117 3.4E-25 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS10080 c5068b51bd44179ffd189c6eb19484d0 232 SMART SM00862 152 228 3.0E-22 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS10080 c5068b51bd44179ffd189c6eb19484d0 232 PANTHER PTHR26402:SF399 6 229 2.6E-91 T 26-04-2016 RGE_RS10080 c5068b51bd44179ffd189c6eb19484d0 232 SUPERFAMILY SSF52172 5 183 6.64E-39 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS10080 c5068b51bd44179ffd189c6eb19484d0 232 Gene3D G3DSA:3.40.50.2300 3 128 2.4E-36 T 26-04-2016 RGE_RS10080 c5068b51bd44179ffd189c6eb19484d0 232 SMART SM00448 6 116 5.9E-37 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS09530 3923847ea8106c546cccbbad0ca32b64 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 206 224 2.5E-37 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS09530 3923847ea8106c546cccbbad0ca32b64 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 9 31 2.5E-37 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS09530 3923847ea8106c546cccbbad0ca32b64 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 270 285 2.5E-37 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS09530 3923847ea8106c546cccbbad0ca32b64 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 300 321 2.5E-37 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS09530 3923847ea8106c546cccbbad0ca32b64 378 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 226 243 2.5E-37 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS09530 3923847ea8106c546cccbbad0ca32b64 378 PANTHER PTHR30531 3 360 9.4E-101 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS09530 3923847ea8106c546cccbbad0ca32b64 378 Gene3D G3DSA:3.40.1690.10 216 354 5.5E-56 T 26-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal RGE_RS09530 3923847ea8106c546cccbbad0ca32b64 378 SUPERFAMILY SSF160544 242 349 1.44E-35 T 26-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal RGE_RS09530 3923847ea8106c546cccbbad0ca32b64 378 PANTHER PTHR30531:SF4 3 360 9.4E-101 T 26-04-2016 RGE_RS09530 3923847ea8106c546cccbbad0ca32b64 378 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 345 2.2E-110 T 26-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RGE_RS15055 a9880ecf4d73c0710c69c65db28a44a1 467 Gene3D G3DSA:3.50.50.60 2 149 8.2E-10 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15055 a9880ecf4d73c0710c69c65db28a44a1 467 SUPERFAMILY SSF51905 2 227 5.5E-19 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15055 a9880ecf4d73c0710c69c65db28a44a1 467 PANTHER PTHR40254 1 456 1.0E-66 T 26-04-2016 RGE_RS15055 a9880ecf4d73c0710c69c65db28a44a1 467 Pfam PF13454 FAD-NAD(P)-binding 5 152 4.1E-31 T 26-04-2016 RGE_RS15055 a9880ecf4d73c0710c69c65db28a44a1 467 SUPERFAMILY SSF51905 190 450 4.63E-5 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15055 a9880ecf4d73c0710c69c65db28a44a1 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 188 206 6.0E-5 T 26-04-2016 RGE_RS15055 a9880ecf4d73c0710c69c65db28a44a1 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 6.0E-5 T 26-04-2016 RGE_RS15055 a9880ecf4d73c0710c69c65db28a44a1 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 6.0E-5 T 26-04-2016 RGE_RS15055 a9880ecf4d73c0710c69c65db28a44a1 467 PANTHER PTHR40254:SF1 1 456 1.0E-66 T 26-04-2016 RGE_RS15055 a9880ecf4d73c0710c69c65db28a44a1 467 Gene3D G3DSA:3.50.50.60 150 223 6.8E-6 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS05915 764d160c8f7b6aeb5821d7e80db3301e 230 SUPERFAMILY SSF102588 8 224 1.31E-30 T 26-04-2016 IPR024078 Putative deacetylase LmbE-like domain RGE_RS05915 764d160c8f7b6aeb5821d7e80db3301e 230 Pfam PF02585 GlcNAc-PI de-N-acetylase 8 138 3.7E-13 T 26-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related RGE_RS05915 764d160c8f7b6aeb5821d7e80db3301e 230 Gene3D G3DSA:3.40.50.10320 8 213 1.8E-22 T 26-04-2016 IPR024078 Putative deacetylase LmbE-like domain RGE_RS21370 fc277e7c1ac02c0801fcfb4b33b8d356 436 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 70 320 7.4E-20 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS21370 fc277e7c1ac02c0801fcfb4b33b8d356 436 Gene3D G3DSA:2.40.50.100 208 239 3.1E-16 T 26-04-2016 RGE_RS21370 fc277e7c1ac02c0801fcfb4b33b8d356 436 Gene3D G3DSA:2.40.50.100 83 116 3.1E-16 T 26-04-2016 RGE_RS21370 fc277e7c1ac02c0801fcfb4b33b8d356 436 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 94 114 1.2E-5 T 26-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RGE_RS21370 fc277e7c1ac02c0801fcfb4b33b8d356 436 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 394 409 1.2E-5 T 26-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RGE_RS21370 fc277e7c1ac02c0801fcfb4b33b8d356 436 PANTHER PTHR30572 25 342 1.9E-70 T 26-04-2016 RGE_RS21370 fc277e7c1ac02c0801fcfb4b33b8d356 436 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 65 343 9.7E-47 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS21370 fc277e7c1ac02c0801fcfb4b33b8d356 436 SUPERFAMILY SSF111369 70 324 1.18E-17 T 26-04-2016 RGE_RS21370 fc277e7c1ac02c0801fcfb4b33b8d356 436 PANTHER PTHR30572:SF1 25 342 1.9E-70 T 26-04-2016 RGE_RS06530 c60ad61295283b1f04208919498884ec 113 Gene3D G3DSA:3.30.160.100 1 103 4.7E-6 T 26-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RGE_RS06530 c60ad61295283b1f04208919498884ec 113 SUPERFAMILY SSF69754 7 94 5.89E-7 T 26-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RGE_RS06530 c60ad61295283b1f04208919498884ec 113 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 8 95 5.2E-7 T 26-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 358 380 1.5E-10 T 26-04-2016 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.5E-10 T 26-04-2016 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 346 367 7.2E-6 T 26-04-2016 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 7.2E-6 T 26-04-2016 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 Pfam PF00890 FAD binding domain 7 395 1.8E-111 T 26-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 579 1.5E-228 T 26-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 SUPERFAMILY SSF56425 227 356 5.53E-38 T 26-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 SUPERFAMILY SSF51905 359 415 1.26E-76 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 SUPERFAMILY SSF51905 2 250 1.26E-76 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 Gene3D G3DSA:3.90.700.10 234 350 1.9E-33 T 26-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 PIRSF PIRSF000171 1 573 3.5E-48 T 26-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 Gene3D G3DSA:4.10.80.40 550 574 6.2E-11 T 26-04-2016 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 PANTHER PTHR11632:SF50 1 582 0.0 T 26-04-2016 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 26-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 PANTHER PTHR11632 1 582 0.0 T 26-04-2016 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 Gene3D G3DSA:3.50.50.60 2 233 1.6E-106 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 Gene3D G3DSA:3.50.50.60 351 415 1.6E-106 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 SUPERFAMILY SSF46977 443 579 7.98E-44 T 26-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 Pfam PF02910 Fumarate reductase flavoprotein C-term 451 579 3.4E-38 T 26-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RGE_RS10380 a2e9111a02621f880b5cc8e32e7508d3 589 Gene3D G3DSA:1.20.58.100 438 549 8.9E-34 T 26-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RGE_RS22365 007fa1d1538c7bb5bf9da9dffcea2c34 555 Pfam PF04055 Radical SAM superfamily 201 362 1.7E-21 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS22365 007fa1d1538c7bb5bf9da9dffcea2c34 555 Pfam PF02310 B12 binding domain 14 132 5.1E-23 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS22365 007fa1d1538c7bb5bf9da9dffcea2c34 555 SMART SM00729 195 406 1.1E-31 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS22365 007fa1d1538c7bb5bf9da9dffcea2c34 555 PANTHER PTHR11918 16 526 5.8E-159 T 26-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RGE_RS22365 007fa1d1538c7bb5bf9da9dffcea2c34 555 SUPERFAMILY SSF102114 175 398 6.67E-41 T 26-04-2016 RGE_RS22365 007fa1d1538c7bb5bf9da9dffcea2c34 555 TIGRFAM TIGR02026 BchE: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 2 498 8.7E-239 T 26-04-2016 IPR011772 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase GO:0015995|GO:0016709|GO:0050661|GO:0055114 KEGG: 00130+1.14.13.-|KEGG: 00140+1.14.13.-|KEGG: 00232+1.14.13.-|KEGG: 00261+1.14.13.-|KEGG: 00340+1.14.13.-|KEGG: 00360+1.14.13.-|KEGG: 00361+1.14.13.-|KEGG: 00362+1.14.13.-|KEGG: 00363+1.14.13.-|KEGG: 00380+1.14.13.-|KEGG: 00403+1.14.13.-|KEGG: 00590+1.14.13.-|KEGG: 00591+1.14.13.-|KEGG: 00622+1.14.13.-|KEGG: 00623+1.14.13.-|KEGG: 00624+1.14.13.-|KEGG: 00625+1.14.13.-|KEGG: 00626+1.14.13.-|KEGG: 00627+1.14.13.-|KEGG: 00640+1.14.13.-|KEGG: 00643+1.14.13.-|KEGG: 00830+1.14.13.-|KEGG: 00903+1.14.13.-|KEGG: 00904+1.14.13.-|KEGG: 00905+1.14.13.-|KEGG: 00906+1.14.13.-|KEGG: 00930+1.14.13.-|KEGG: 00940+1.14.13.-|KEGG: 00941+1.14.13.-|KEGG: 00943+1.14.13.-|KEGG: 00945+1.14.13.-|KEGG: 00950+1.14.13.-|KEGG: 00966+1.14.13.-|KEGG: 00980+1.14.13.-|KEGG: 00982+1.14.13.-|KEGG: 00983+1.14.13.- RGE_RS22365 007fa1d1538c7bb5bf9da9dffcea2c34 555 Gene3D G3DSA:3.80.30.20 201 392 1.8E-37 T 26-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RGE_RS22365 007fa1d1538c7bb5bf9da9dffcea2c34 555 PANTHER PTHR11918:SF70 16 526 5.8E-159 T 26-04-2016 RGE_RS19420 f4a5fdc52d185f1558705cbf0ee3c0bd 159 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 9 102 3.4E-14 T 26-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 RGE_RS19420 f4a5fdc52d185f1558705cbf0ee3c0bd 159 Gene3D G3DSA:3.40.140.10 4 158 2.4E-33 T 26-04-2016 RGE_RS19420 f4a5fdc52d185f1558705cbf0ee3c0bd 159 PANTHER PTHR11079 5 140 8.2E-23 T 26-04-2016 RGE_RS19420 f4a5fdc52d185f1558705cbf0ee3c0bd 159 SUPERFAMILY SSF53927 4 158 9.74E-32 T 26-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RGE_RS19420 f4a5fdc52d185f1558705cbf0ee3c0bd 159 PANTHER PTHR11079:SF69 5 140 8.2E-23 T 26-04-2016 RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 SUPERFAMILY SSF63411 732 912 1.59E-30 T 26-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 PANTHER PTHR11851:SF136 37 852 1.7E-188 T 26-04-2016 RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 Gene3D G3DSA:3.30.830.10 42 252 9.7E-50 T 26-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 SUPERFAMILY SSF63411 40 255 5.5E-51 T 26-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 PANTHER PTHR11851 37 852 1.7E-188 T 26-04-2016 RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 Pfam PF00675 Insulinase (Peptidase family M16) 53 197 1.7E-18 T 26-04-2016 IPR011765 Peptidase M16, N-terminal RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 Gene3D G3DSA:3.30.830.10 284 442 1.5E-16 T 26-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 Gene3D G3DSA:3.30.830.10 733 911 9.9E-25 T 26-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 Gene3D G3DSA:3.30.830.10 495 708 2.0E-22 T 26-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 SUPERFAMILY SSF63411 267 452 1.23E-27 T 26-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 Pfam PF05193 Peptidase M16 inactive domain 661 843 4.6E-26 T 26-04-2016 IPR007863 Peptidase M16, C-terminal RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 Pfam PF05193 Peptidase M16 inactive domain 208 379 2.4E-21 T 26-04-2016 IPR007863 Peptidase M16, C-terminal RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 72 95 - T 26-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RGE_RS03815 2a5c3613c502267c8dc8315aa59ac372 915 SUPERFAMILY SSF63411 483 710 5.76E-25 T 26-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RGE_RS19985 0890c9c555aedcc2f08c0a753b2ec80d 967 Pfam PF00575 S1 RNA binding domain 36 117 9.1E-13 T 26-04-2016 IPR003029 S1 domain GO:0003676 RGE_RS19985 0890c9c555aedcc2f08c0a753b2ec80d 967 Pfam PF10150 Ribonuclease E/G family 120 389 1.2E-95 T 26-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RGE_RS19985 0890c9c555aedcc2f08c0a753b2ec80d 967 Gene3D G3DSA:2.40.50.140 32 124 7.9E-34 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS19985 0890c9c555aedcc2f08c0a753b2ec80d 967 SMART SM00316 37 118 7.6E-12 T 26-04-2016 IPR022967 RNA-binding domain, S1 RGE_RS19985 0890c9c555aedcc2f08c0a753b2ec80d 967 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 423 7.5E-160 T 26-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 RGE_RS19985 0890c9c555aedcc2f08c0a753b2ec80d 967 Hamap MF_00970 Ribonuclease E [rne]. 1 959 32.884 T 26-04-2016 IPR028878 Ribonuclease E GO:0006396|GO:0008995 RGE_RS19985 0890c9c555aedcc2f08c0a753b2ec80d 967 SUPERFAMILY SSF50249 39 124 8.29E-19 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS19985 0890c9c555aedcc2f08c0a753b2ec80d 967 PANTHER PTHR30001 1 856 1.3E-302 T 26-04-2016 RGE_RS19985 0890c9c555aedcc2f08c0a753b2ec80d 967 PANTHER PTHR30001:SF1 1 856 1.3E-302 T 26-04-2016 RGE_RS11305 997d37457dd91e230e181b51395173d6 234 Gene3D G3DSA:1.10.10.10 173 210 3.7E-6 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11305 997d37457dd91e230e181b51395173d6 234 PANTHER PTHR26402:SF550 5 143 7.0E-56 T 26-04-2016 RGE_RS11305 997d37457dd91e230e181b51395173d6 234 Gene3D G3DSA:3.40.50.2300 4 128 3.5E-25 T 26-04-2016 RGE_RS11305 997d37457dd91e230e181b51395173d6 234 SUPERFAMILY SSF52172 4 134 1.85E-29 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11305 997d37457dd91e230e181b51395173d6 234 SMART SM00448 5 118 5.1E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11305 997d37457dd91e230e181b51395173d6 234 Pfam PF00072 Response regulator receiver domain 7 118 4.4E-20 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11305 997d37457dd91e230e181b51395173d6 234 SUPERFAMILY SSF46785 166 209 2.05E-6 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11305 997d37457dd91e230e181b51395173d6 234 Pfam PF09339 IclR helix-turn-helix domain 170 208 6.1E-6 T 26-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RGE_RS11305 997d37457dd91e230e181b51395173d6 234 PIRSF PIRSF006171 4 228 1.9E-71 T 26-04-2016 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 RGE_RS11305 997d37457dd91e230e181b51395173d6 234 PANTHER PTHR26402 5 143 7.0E-56 T 26-04-2016 RGE_RS11060 e7b2085e6f73fd59c5ff4cd0a8a25314 416 PANTHER PTHR12126:SF1 1 315 9.8E-51 T 26-04-2016 RGE_RS11060 e7b2085e6f73fd59c5ff4cd0a8a25314 416 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 192 1.7E-11 T 26-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RGE_RS11060 e7b2085e6f73fd59c5ff4cd0a8a25314 416 SUPERFAMILY SSF51735 1 272 1.19E-44 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11060 e7b2085e6f73fd59c5ff4cd0a8a25314 416 PANTHER PTHR12126 1 315 9.8E-51 T 26-04-2016 RGE_RS11060 e7b2085e6f73fd59c5ff4cd0a8a25314 416 Gene3D G3DSA:3.40.50.720 1 215 5.0E-39 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11060 e7b2085e6f73fd59c5ff4cd0a8a25314 416 Pfam PF13781 DoxX-like family 309 408 7.9E-27 T 26-04-2016 IPR025695 DoxX-like family RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 PANTHER PTHR11670 305 861 0.0 T 26-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 855 0.0 T 26-04-2016 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 SUPERFAMILY SSF52016 162 372 2.75E-62 T 26-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 Pfam PF11791 Aconitate B N-terminal domain 4 156 2.8E-64 T 26-04-2016 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 SUPERFAMILY SSF53732 378 857 7.32E-145 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 Gene3D G3DSA:3.30.499.10 687 860 2.7E-50 T 26-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 PIRSF PIRSF036687 1 861 0.0 T 26-04-2016 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 1.7E-92 T 26-04-2016 IPR015929 Aconitase B, N-terminal GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 Gene3D G3DSA:3.30.499.10 405 522 2.7E-61 T 26-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 Pfam PF00330 Aconitase family (aconitate hydratase) 467 817 5.9E-41 T 26-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 ProSitePatterns PS00450 Aconitase family signature 1. 705 722 - T 26-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 Gene3D G3DSA:3.20.19.10 162 361 2.3E-85 T 26-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 SUPERFAMILY SSF74778 2 160 3.4E-67 T 26-04-2016 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 Gene3D G3DSA:3.40.1060.10 523 685 8.5E-86 T 26-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 ProSitePatterns PS01244 Aconitase family signature 2. 763 776 - T 26-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS05975 d168c1c0ec1705bc96c6d4c32c25ac13 863 PANTHER PTHR11670:SF39 305 861 0.0 T 26-04-2016 RGE_RS13390 e5d4a90783a0b3089ab68a5fa3f36d66 368 SMART SM00564 52 84 31.0 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS13390 e5d4a90783a0b3089ab68a5fa3f36d66 368 SMART SM00564 305 336 6.5 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS13390 e5d4a90783a0b3089ab68a5fa3f36d66 368 SMART SM00564 131 162 30.0 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS13390 e5d4a90783a0b3089ab68a5fa3f36d66 368 SMART SM00564 263 295 380.0 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS13390 e5d4a90783a0b3089ab68a5fa3f36d66 368 PANTHER PTHR32303:SF8 22 345 1.9E-13 T 26-04-2016 RGE_RS13390 e5d4a90783a0b3089ab68a5fa3f36d66 368 SUPERFAMILY SSF50998 23 359 1.08E-53 T 26-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RGE_RS13390 e5d4a90783a0b3089ab68a5fa3f36d66 368 PANTHER PTHR32303 22 345 1.9E-13 T 26-04-2016 RGE_RS13390 e5d4a90783a0b3089ab68a5fa3f36d66 368 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 1 367 25.275 T 26-04-2016 IPR017687 Outer membrane protein assembly factor BamB RGE_RS13390 e5d4a90783a0b3089ab68a5fa3f36d66 368 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 3 366 1.1E-90 T 26-04-2016 IPR017687 Outer membrane protein assembly factor BamB RGE_RS13390 e5d4a90783a0b3089ab68a5fa3f36d66 368 Gene3D G3DSA:2.140.10.10 1 367 3.9E-44 T 26-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RGE_RS13390 e5d4a90783a0b3089ab68a5fa3f36d66 368 Pfam PF13360 PQQ-like domain 66 294 3.0E-39 T 26-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RGE_RS13975 e0e2ce6b6a1488aaf6f85e3eda129678 328 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 74 237 5.3E-21 T 26-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RGE_RS13975 e0e2ce6b6a1488aaf6f85e3eda129678 328 Gene3D G3DSA:3.40.50.970 30 323 1.7E-65 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS13975 e0e2ce6b6a1488aaf6f85e3eda129678 328 PANTHER PTHR32154 32 328 6.5E-103 T 26-04-2016 RGE_RS13975 e0e2ce6b6a1488aaf6f85e3eda129678 328 SUPERFAMILY SSF52518 33 310 4.21E-68 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS07240 43e4438665bbcea457b24162db095abe 629 SMART SM00853 441 585 2.7E-49 T 26-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RGE_RS07240 43e4438665bbcea457b24162db095abe 629 Gene3D G3DSA:3.30.230.10 206 328 1.0E-35 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS07240 43e4438665bbcea457b24162db095abe 629 Pfam PF08676 MutL C terminal dimerisation domain 437 585 1.5E-43 T 26-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RGE_RS07240 43e4438665bbcea457b24162db095abe 629 SUPERFAMILY SSF55874 8 207 4.45E-51 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07240 43e4438665bbcea457b24162db095abe 629 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 100 106 - T 26-04-2016 IPR014762 DNA mismatch repair, conserved site RGE_RS07240 43e4438665bbcea457b24162db095abe 629 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 212 328 1.2E-35 T 26-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 RGE_RS07240 43e4438665bbcea457b24162db095abe 629 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 8 625 26.935 T 26-04-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 RGE_RS07240 43e4438665bbcea457b24162db095abe 629 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 9 309 9.2E-91 T 26-04-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 RGE_RS07240 43e4438665bbcea457b24162db095abe 629 Gene3D G3DSA:3.30.565.10 9 205 9.2E-70 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS07240 43e4438665bbcea457b24162db095abe 629 SMART SM01340 211 329 7.7E-53 T 26-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 RGE_RS07240 43e4438665bbcea457b24162db095abe 629 SUPERFAMILY SSF54211 194 329 1.21E-33 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS07240 43e4438665bbcea457b24162db095abe 629 PANTHER PTHR10073 10 625 1.4E-146 T 26-04-2016 RGE_RS07240 43e4438665bbcea457b24162db095abe 629 SUPERFAMILY SSF118116 436 627 7.06E-54 T 26-04-2016 RGE_RS07240 43e4438665bbcea457b24162db095abe 629 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 132 1.5E-9 T 26-04-2016 RGE_RS22345 dc3aa727f0dfcf5afc4e9bfed6420d0b 498 Pfam PF00005 ABC transporter 24 172 2.8E-31 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS22345 dc3aa727f0dfcf5afc4e9bfed6420d0b 498 Pfam PF00005 ABC transporter 264 405 2.1E-9 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS22345 dc3aa727f0dfcf5afc4e9bfed6420d0b 498 PANTHER PTHR24220:SF239 9 369 1.8E-146 T 26-04-2016 RGE_RS22345 dc3aa727f0dfcf5afc4e9bfed6420d0b 498 ProSitePatterns PS00211 ABC transporters family signature. 389 403 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS22345 dc3aa727f0dfcf5afc4e9bfed6420d0b 498 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS22345 dc3aa727f0dfcf5afc4e9bfed6420d0b 498 Gene3D G3DSA:3.40.50.300 4 232 3.2E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22345 dc3aa727f0dfcf5afc4e9bfed6420d0b 498 Gene3D G3DSA:3.40.50.300 262 469 1.1E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22345 dc3aa727f0dfcf5afc4e9bfed6420d0b 498 SUPERFAMILY SSF52540 261 469 1.93E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22345 dc3aa727f0dfcf5afc4e9bfed6420d0b 498 PANTHER PTHR24220 9 369 1.8E-146 T 26-04-2016 RGE_RS22345 dc3aa727f0dfcf5afc4e9bfed6420d0b 498 SMART SM00382 32 219 8.8E-15 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS22345 dc3aa727f0dfcf5afc4e9bfed6420d0b 498 SUPERFAMILY SSF52540 6 229 7.03E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16800 956c6b0810b30d43ffcf7bb8661e7dd9 210 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 125 138 - T 26-04-2016 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RGE_RS16800 956c6b0810b30d43ffcf7bb8661e7dd9 210 SUPERFAMILY SSF51569 6 207 1.23E-69 T 26-04-2016 RGE_RS16800 956c6b0810b30d43ffcf7bb8661e7dd9 210 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 37 46 - T 26-04-2016 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562|UniPathway: UPA00227|UniPathway: UPA00856 RGE_RS16800 956c6b0810b30d43ffcf7bb8661e7dd9 210 Pfam PF01081 KDPG and KHG aldolase 12 200 3.1E-74 T 26-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RGE_RS16800 956c6b0810b30d43ffcf7bb8661e7dd9 210 PANTHER PTHR30246:SF0 1 210 3.2E-94 T 26-04-2016 RGE_RS16800 956c6b0810b30d43ffcf7bb8661e7dd9 210 PANTHER PTHR30246 1 210 3.2E-94 T 26-04-2016 RGE_RS16800 956c6b0810b30d43ffcf7bb8661e7dd9 210 Gene3D G3DSA:3.20.20.70 10 206 3.7E-77 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS16800 956c6b0810b30d43ffcf7bb8661e7dd9 210 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 12 205 2.4E-77 T 26-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RGE_RS07680 faf0bdd39170e42f14e5fd31c5d61a18 448 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 355 435 1.8E-31 T 26-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RGE_RS07680 faf0bdd39170e42f14e5fd31c5d61a18 448 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 364 375 - T 26-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RGE_RS07680 faf0bdd39170e42f14e5fd31c5d61a18 448 SUPERFAMILY SSF142019 34 263 1.01E-80 T 26-04-2016 RGE_RS07680 faf0bdd39170e42f14e5fd31c5d61a18 448 Pfam PF10531 SLBB domain 266 313 5.2E-13 T 26-04-2016 IPR019554 Soluble ligand binding domain RGE_RS07680 faf0bdd39170e42f14e5fd31c5d61a18 448 SUPERFAMILY SSF142984 264 346 7.98E-26 T 26-04-2016 RGE_RS07680 faf0bdd39170e42f14e5fd31c5d61a18 448 SUPERFAMILY SSF140490 348 446 6.67E-38 T 26-04-2016 RGE_RS07680 faf0bdd39170e42f14e5fd31c5d61a18 448 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 71 242 4.9E-44 T 26-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain RGE_RS07680 faf0bdd39170e42f14e5fd31c5d61a18 448 PANTHER PTHR11780 34 446 6.0E-213 T 26-04-2016 RGE_RS07680 faf0bdd39170e42f14e5fd31c5d61a18 448 SMART SM00928 351 396 3.6E-26 T 26-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RGE_RS07680 faf0bdd39170e42f14e5fd31c5d61a18 448 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 34 437 6.1E-187 T 26-04-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 RGE_RS07680 faf0bdd39170e42f14e5fd31c5d61a18 448 PANTHER PTHR11780:SF10 34 446 6.0E-213 T 26-04-2016 RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 8.3E-12 T 26-04-2016 IPR027399 Alcohol dehydrogenase GroES-associated RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 Pfam PF00107 Zinc-binding dehydrogenase 196 274 7.4E-12 T 26-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 Gene3D G3DSA:3.40.50.720 188 331 1.8E-36 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 PANTHER PTHR11695:SF281 126 262 5.0E-152 T 26-04-2016 RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 PANTHER PTHR11695:SF281 12 106 5.0E-152 T 26-04-2016 RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 PANTHER PTHR11695:SF281 288 389 5.0E-152 T 26-04-2016 RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 150 3.4E-30 T 26-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 Gene3D G3DSA:3.90.180.10 1 187 6.6E-53 T 26-04-2016 IPR011032 GroES-like RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 SUPERFAMILY SSF50129 1 202 1.0E-58 T 26-04-2016 IPR011032 GroES-like RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 SUPERFAMILY SSF51735 163 351 3.48E-64 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 PANTHER PTHR11695 126 262 5.0E-152 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 PANTHER PTHR11695 12 106 5.0E-152 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS11045 e10d75c0ae01fe7d6b5de952371c1ca8 389 PANTHER PTHR11695 288 389 5.0E-152 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS20145 018c0eba2711a2f7f0ad82f8d5abfc8e 373 Pfam PF16363 GDP-mannose 4,6 dehydratase 8 347 7.5E-161 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20145 018c0eba2711a2f7f0ad82f8d5abfc8e 373 PANTHER PTHR10366 6 284 9.6E-214 T 26-04-2016 RGE_RS20145 018c0eba2711a2f7f0ad82f8d5abfc8e 373 PANTHER PTHR10366 311 358 9.6E-214 T 26-04-2016 RGE_RS20145 018c0eba2711a2f7f0ad82f8d5abfc8e 373 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 5 357 57.107 T 26-04-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 RGE_RS20145 018c0eba2711a2f7f0ad82f8d5abfc8e 373 SUPERFAMILY SSF51735 8 353 7.68E-85 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20145 018c0eba2711a2f7f0ad82f8d5abfc8e 373 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 5 353 1.5E-178 T 26-04-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 RGE_RS20145 018c0eba2711a2f7f0ad82f8d5abfc8e 373 Gene3D G3DSA:3.90.25.10 195 249 3.1E-53 T 26-04-2016 RGE_RS20145 018c0eba2711a2f7f0ad82f8d5abfc8e 373 Gene3D G3DSA:3.90.25.10 305 361 3.1E-53 T 26-04-2016 RGE_RS20145 018c0eba2711a2f7f0ad82f8d5abfc8e 373 Gene3D G3DSA:3.40.50.720 3 192 3.1E-44 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20145 018c0eba2711a2f7f0ad82f8d5abfc8e 373 PANTHER PTHR10366:SF32 6 284 9.6E-214 T 26-04-2016 RGE_RS20145 018c0eba2711a2f7f0ad82f8d5abfc8e 373 PANTHER PTHR10366:SF32 311 358 9.6E-214 T 26-04-2016 RGE_RS16510 cb1adfe84214891aa4a8787b25a52d6b 326 Gene3D G3DSA:3.30.200.20 2 103 9.6E-36 T 26-04-2016 RGE_RS16510 cb1adfe84214891aa4a8787b25a52d6b 326 Gene3D G3DSA:3.90.1200.10 105 315 7.9E-59 T 26-04-2016 RGE_RS16510 cb1adfe84214891aa4a8787b25a52d6b 326 SUPERFAMILY SSF56112 6 315 6.12E-72 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS16510 cb1adfe84214891aa4a8787b25a52d6b 326 PANTHER PTHR21064 9 294 1.4E-38 T 26-04-2016 RGE_RS16510 cb1adfe84214891aa4a8787b25a52d6b 326 Hamap MF_00301 Homoserine kinase [thrB]. 1 326 149.139 T 26-04-2016 IPR005280 Homoserine kinase ThrB GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 RGE_RS16510 cb1adfe84214891aa4a8787b25a52d6b 326 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 2 311 1.5E-92 T 26-04-2016 IPR005280 Homoserine kinase ThrB GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 RGE_RS16510 cb1adfe84214891aa4a8787b25a52d6b 326 Pfam PF01636 Phosphotransferase enzyme family 27 258 1.9E-36 T 26-04-2016 IPR002575 Aminoglycoside phosphotransferase RGE_RS09470 5cff4a2bb9f090756c021b0daccf72c5 281 PANTHER PTHR21299:SF1 1 280 3.9E-100 T 26-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RGE_RS09470 5cff4a2bb9f090756c021b0daccf72c5 281 Hamap MF_00158 Pantothenate synthetase [panC]. 2 281 35.214 T 26-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RGE_RS09470 5cff4a2bb9f090756c021b0daccf72c5 281 PANTHER PTHR21299 1 280 3.9E-100 T 26-04-2016 RGE_RS09470 5cff4a2bb9f090756c021b0daccf72c5 281 SUPERFAMILY SSF52374 1 280 3.08E-89 T 26-04-2016 RGE_RS09470 5cff4a2bb9f090756c021b0daccf72c5 281 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 279 5.5E-74 T 26-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RGE_RS09470 5cff4a2bb9f090756c021b0daccf72c5 281 Gene3D G3DSA:3.30.1300.10 172 280 4.7E-26 T 26-04-2016 RGE_RS09470 5cff4a2bb9f090756c021b0daccf72c5 281 Pfam PF02569 Pantoate-beta-alanine ligase 3 279 2.5E-88 T 26-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RGE_RS09470 5cff4a2bb9f090756c021b0daccf72c5 281 Gene3D G3DSA:3.40.50.620 1 169 5.9E-65 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS17580 fd9389afbf4d683f81e086e4a654f63b 225 SUPERFAMILY SSF51366 2 216 2.69E-74 T 26-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RGE_RS17580 fd9389afbf4d683f81e086e4a654f63b 225 Pfam PF00834 Ribulose-phosphate 3 epimerase family 4 200 5.3E-89 T 26-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RGE_RS17580 fd9389afbf4d683f81e086e4a654f63b 225 PIRSF PIRSF001461 1 225 5.5E-101 T 26-04-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RGE_RS17580 fd9389afbf4d683f81e086e4a654f63b 225 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 4 213 2.7E-96 T 26-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RGE_RS17580 fd9389afbf4d683f81e086e4a654f63b 225 PANTHER PTHR11749:SF7 2 225 1.8E-120 T 26-04-2016 RGE_RS17580 fd9389afbf4d683f81e086e4a654f63b 225 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 133 155 - T 26-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RGE_RS17580 fd9389afbf4d683f81e086e4a654f63b 225 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 31 45 - T 26-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RGE_RS17580 fd9389afbf4d683f81e086e4a654f63b 225 Gene3D G3DSA:3.20.20.70 3 222 2.6E-95 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS17580 fd9389afbf4d683f81e086e4a654f63b 225 PANTHER PTHR11749 2 225 1.8E-120 T 26-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RGE_RS15410 7c51d49d44dde30cb14e8bb6d31fb5b5 166 PANTHER PTHR23083 28 155 1.5E-17 T 26-04-2016 RGE_RS15410 7c51d49d44dde30cb14e8bb6d31fb5b5 166 Gene3D G3DSA:1.25.40.10 24 151 1.4E-23 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS15410 7c51d49d44dde30cb14e8bb6d31fb5b5 166 SUPERFAMILY SSF48452 25 133 3.13E-21 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS15410 7c51d49d44dde30cb14e8bb6d31fb5b5 166 Pfam PF14559 Tetratricopeptide repeat 62 122 6.5E-8 T 26-04-2016 RGE_RS15410 7c51d49d44dde30cb14e8bb6d31fb5b5 166 SMART SM00028 86 119 3.2E-4 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS15410 7c51d49d44dde30cb14e8bb6d31fb5b5 166 SMART SM00028 52 85 130.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS07575 67eb91f405c302ff9f4f02348f30cf37 404 PIRSF PIRSF005572 4 384 6.1E-127 T 26-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RGE_RS07575 67eb91f405c302ff9f4f02348f30cf37 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 26-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RGE_RS07575 67eb91f405c302ff9f4f02348f30cf37 404 SUPERFAMILY SSF53383 6 390 4.65E-111 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS07575 67eb91f405c302ff9f4f02348f30cf37 404 Gene3D G3DSA:3.90.1150.10 254 374 8.0E-48 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS07575 67eb91f405c302ff9f4f02348f30cf37 404 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 5 404 1.4E-216 T 26-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 RGE_RS07575 67eb91f405c302ff9f4f02348f30cf37 404 PANTHER PTHR11601 6 404 9.8E-229 T 26-04-2016 RGE_RS07575 67eb91f405c302ff9f4f02348f30cf37 404 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 3 395 52.832 T 26-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 RGE_RS07575 67eb91f405c302ff9f4f02348f30cf37 404 Pfam PF00266 Aminotransferase class-V 7 368 1.9E-81 T 26-04-2016 IPR000192 Aminotransferase class V domain RGE_RS07575 67eb91f405c302ff9f4f02348f30cf37 404 PANTHER PTHR11601:SF34 6 404 9.8E-229 T 26-04-2016 RGE_RS07575 67eb91f405c302ff9f4f02348f30cf37 404 Gene3D G3DSA:3.40.640.10 19 253 6.3E-96 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS00885 7326f5e0ea3ce36f25772c1de924f4b8 324 Pfam PF00005 ABC transporter 27 184 2.8E-27 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS00885 7326f5e0ea3ce36f25772c1de924f4b8 324 PANTHER PTHR24220 9 323 2.1E-129 T 26-04-2016 RGE_RS00885 7326f5e0ea3ce36f25772c1de924f4b8 324 SUPERFAMILY SSF52540 36 306 4.69E-62 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00885 7326f5e0ea3ce36f25772c1de924f4b8 324 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS00885 7326f5e0ea3ce36f25772c1de924f4b8 324 Gene3D G3DSA:3.40.50.300 7 258 1.6E-70 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00885 7326f5e0ea3ce36f25772c1de924f4b8 324 PANTHER PTHR24220:SF586 9 323 2.1E-129 T 26-04-2016 RGE_RS00885 7326f5e0ea3ce36f25772c1de924f4b8 324 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 301 1.2E-18 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS00885 7326f5e0ea3ce36f25772c1de924f4b8 324 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 320 1.3E-21 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS00885 7326f5e0ea3ce36f25772c1de924f4b8 324 SMART SM00382 36 241 1.1E-13 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11770 5a2b4a99b374da62ef0d4205d1e12fc8 214 PANTHER PTHR30383 1 214 9.0E-40 T 26-04-2016 RGE_RS11770 5a2b4a99b374da62ef0d4205d1e12fc8 214 Gene3D G3DSA:3.40.50.1110 31 213 2.8E-50 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS11770 5a2b4a99b374da62ef0d4205d1e12fc8 214 SUPERFAMILY SSF52266 31 213 3.36E-46 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS11770 5a2b4a99b374da62ef0d4205d1e12fc8 214 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 35 196 2.3E-23 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS08765 d9bde6fe19252800e7f78414b6a671a7 448 Pfam PF06527 TniQ 19 155 9.9E-18 T 26-04-2016 IPR009492 TniQ RGE_RS08765 d9bde6fe19252800e7f78414b6a671a7 448 Gene3D G3DSA:1.10.260.40 244 290 3.7E-4 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS22370 6e4560665c3372273752a3b8cfe59491 195 Pfam PF02830 V4R domain 136 193 1.3E-17 T 26-04-2016 IPR004096 4-vinyl reductase, 4VR RGE_RS22370 6e4560665c3372273752a3b8cfe59491 195 SMART SM00989 134 195 1.1E-18 T 26-04-2016 IPR004096 4-vinyl reductase, 4VR RGE_RS22370 6e4560665c3372273752a3b8cfe59491 195 SUPERFAMILY SSF111126 75 195 3.35E-24 T 26-04-2016 IPR024096 NO signalling/Golgi transport ligand-binding domain RGE_RS22370 6e4560665c3372273752a3b8cfe59491 195 TIGRFAM TIGR02019 BchJ: bacteriochlorophyll 4-vinyl reductase 6 193 5.5E-60 T 26-04-2016 IPR010249 Bacteriochlorophyll 4-vinyl reductase GO:0015979|GO:0030494 UniPathway: UPA00671 RGE_RS22370 6e4560665c3372273752a3b8cfe59491 195 Gene3D G3DSA:3.30.1380.20 50 194 1.5E-20 T 26-04-2016 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 PRINTS PR01607 Apyrase family signature 601 620 3.8E-17 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 PRINTS PR01607 Apyrase family signature 271 288 3.8E-17 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 PRINTS PR01607 Apyrase family signature 300 323 3.8E-17 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 PRINTS PR01607 Apyrase family signature 56 74 3.8E-17 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 PRINTS PR01607 Apyrase family signature 343 363 3.8E-17 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 PANTHER PTHR11575:SF6 552 673 6.7E-142 T 26-04-2016 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 PANTHER PTHR11575:SF6 57 532 6.7E-142 T 26-04-2016 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 Gene3D G3DSA:3.60.21.10 50 416 9.9E-79 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 Pfam PF02872 5'-nucleotidase, C-terminal domain 420 619 1.8E-20 T 26-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 SUPERFAMILY SSF55816 558 658 1.29E-26 T 26-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 SUPERFAMILY SSF55816 419 531 1.29E-26 T 26-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 Pfam PF00149 Calcineurin-like phosphoesterase 61 317 7.5E-10 T 26-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 ProSitePatterns PS00786 5'-nucleotidase signature 2. 144 155 - T 26-04-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 PANTHER PTHR11575 552 673 6.7E-142 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 PANTHER PTHR11575 57 532 6.7E-142 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 SUPERFAMILY SSF56300 53 416 1.21E-68 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS15735 3223ddf03a3fc60ba17041b784b7a9da 723 Gene3D G3DSA:3.90.780.10 419 662 6.5E-30 T 26-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RGE_RS08575 574c86e1adcf37640f278d5f69669fed 549 PANTHER PTHR10799:SF750 421 545 2.4E-23 T 26-04-2016 RGE_RS08575 574c86e1adcf37640f278d5f69669fed 549 Pfam PF00990 Diguanylate cyclase, GGDEF domain 387 545 4.5E-40 T 26-04-2016 IPR000160 GGDEF domain RGE_RS08575 574c86e1adcf37640f278d5f69669fed 549 SUPERFAMILY SSF55073 391 547 5.49E-41 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS08575 574c86e1adcf37640f278d5f69669fed 549 SMART SM00267 375 549 2.7E-51 T 26-04-2016 IPR000160 GGDEF domain RGE_RS08575 574c86e1adcf37640f278d5f69669fed 549 Gene3D G3DSA:3.30.70.270 388 547 3.7E-48 T 26-04-2016 RGE_RS08575 574c86e1adcf37640f278d5f69669fed 549 PANTHER PTHR10799 421 545 2.4E-23 T 26-04-2016 RGE_RS08575 574c86e1adcf37640f278d5f69669fed 549 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 387 547 3.4E-41 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07785 71e1c6e0b088d256309ed49b9a331652 153 Pfam PF00571 CBS domain 71 124 2.6E-8 T 26-04-2016 IPR000644 CBS domain RGE_RS07785 71e1c6e0b088d256309ed49b9a331652 153 Pfam PF00571 CBS domain 15 60 6.2E-7 T 26-04-2016 IPR000644 CBS domain RGE_RS07785 71e1c6e0b088d256309ed49b9a331652 153 Gene3D G3DSA:3.10.580.10 1 125 2.8E-24 T 26-04-2016 RGE_RS07785 71e1c6e0b088d256309ed49b9a331652 153 SUPERFAMILY SSF54631 1 142 5.68E-26 T 26-04-2016 RGE_RS07785 71e1c6e0b088d256309ed49b9a331652 153 SMART SM00116 78 125 4.5 T 26-04-2016 IPR000644 CBS domain RGE_RS07785 71e1c6e0b088d256309ed49b9a331652 153 SMART SM00116 13 60 8.3E-7 T 26-04-2016 IPR000644 CBS domain RGE_RS07785 71e1c6e0b088d256309ed49b9a331652 153 PANTHER PTHR11911 15 139 1.4E-21 T 26-04-2016 RGE_RS16395 5ac00c3ac55ea64d8e58cf72233924a7 67 Gene3D G3DSA:1.20.5.890 1 43 2.6E-22 T 26-04-2016 RGE_RS16395 5ac00c3ac55ea64d8e58cf72233924a7 67 PRINTS PR00673 Light harvesting protein A chain signature 3 10 1.7E-8 T 26-04-2016 IPR018332 Antenna complex, alpha subunit RGE_RS16395 5ac00c3ac55ea64d8e58cf72233924a7 67 PRINTS PR00673 Light harvesting protein A chain signature 10 29 1.7E-8 T 26-04-2016 IPR018332 Antenna complex, alpha subunit RGE_RS16395 5ac00c3ac55ea64d8e58cf72233924a7 67 PRINTS PR00673 Light harvesting protein A chain signature 29 40 1.7E-8 T 26-04-2016 IPR018332 Antenna complex, alpha subunit RGE_RS16395 5ac00c3ac55ea64d8e58cf72233924a7 67 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 23 41 - T 26-04-2016 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 RGE_RS16395 5ac00c3ac55ea64d8e58cf72233924a7 67 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 1.8E-14 T 26-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS16395 5ac00c3ac55ea64d8e58cf72233924a7 67 SUPERFAMILY SSF56918 1 49 1.08E-18 T 26-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS19695 bef5b8fb2e97dafb2dd4c36c0629e596 231 PIRSF PIRSF015957 1 231 7.3E-39 T 26-04-2016 IPR007565 (5-formylfuran-3-yl)methyl phosphate synthase KEGG: 00680+4.2.3.153|KEGG: 00902+4.2.3.15|MetaCyc: PWY-3041|MetaCyc: PWY-5423|MetaCyc: PWY-7410 RGE_RS19695 bef5b8fb2e97dafb2dd4c36c0629e596 231 Pfam PF04476 Putative methanogenic enzyme for methanofuran 3 218 2.3E-53 T 26-04-2016 IPR007565 (5-formylfuran-3-yl)methyl phosphate synthase KEGG: 00680+4.2.3.153|KEGG: 00902+4.2.3.15|MetaCyc: PWY-3041|MetaCyc: PWY-5423|MetaCyc: PWY-7410 RGE_RS09550 7428c4a04c167f367336a5bdc8ffa2c3 113 PRINTS PR00956 Flagellar motor switch protein FliN signature 80 95 6.4E-15 T 26-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RGE_RS09550 7428c4a04c167f367336a5bdc8ffa2c3 113 PRINTS PR00956 Flagellar motor switch protein FliN signature 51 67 6.4E-15 T 26-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RGE_RS09550 7428c4a04c167f367336a5bdc8ffa2c3 113 PRINTS PR00956 Flagellar motor switch protein FliN signature 67 80 6.4E-15 T 26-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RGE_RS09550 7428c4a04c167f367336a5bdc8ffa2c3 113 PRINTS PR00956 Flagellar motor switch protein FliN signature 34 50 6.4E-15 T 26-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RGE_RS09550 7428c4a04c167f367336a5bdc8ffa2c3 113 Gene3D G3DSA:2.30.330.10 29 104 6.0E-23 T 26-04-2016 RGE_RS09550 7428c4a04c167f367336a5bdc8ffa2c3 113 SUPERFAMILY SSF101801 31 104 5.36E-19 T 26-04-2016 IPR001543 Surface presentation of antigen (SpoA) RGE_RS09550 7428c4a04c167f367336a5bdc8ffa2c3 113 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 35 103 1.9E-20 T 26-04-2016 IPR001543 Surface presentation of antigen (SpoA) RGE_RS16200 7760e96fb6f4f7cfb57fae1a65915187 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 26-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RGE_RS16200 7760e96fb6f4f7cfb57fae1a65915187 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 2.0E-29 T 26-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RGE_RS16200 7760e96fb6f4f7cfb57fae1a65915187 158 SUPERFAMILY SSF46557 3 78 3.14E-28 T 26-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RGE_RS16200 7760e96fb6f4f7cfb57fae1a65915187 158 SUPERFAMILY SSF54534 83 157 1.7E-24 T 26-04-2016 RGE_RS16200 7760e96fb6f4f7cfb57fae1a65915187 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 5.4E-59 T 26-04-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 RGE_RS16200 7760e96fb6f4f7cfb57fae1a65915187 158 Gene3D G3DSA:3.10.50.30 82 157 2.5E-32 T 26-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RGE_RS16200 7760e96fb6f4f7cfb57fae1a65915187 158 Gene3D G3DSA:1.10.287.180 1 75 5.1E-34 T 26-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RGE_RS16200 7760e96fb6f4f7cfb57fae1a65915187 158 PIRSF PIRSF006092 1 158 2.8E-54 T 26-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RGE_RS16200 7760e96fb6f4f7cfb57fae1a65915187 158 PANTHER PTHR30437 1 157 4.9E-70 T 26-04-2016 RGE_RS16200 7760e96fb6f4f7cfb57fae1a65915187 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.847 T 26-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RGE_RS16200 7760e96fb6f4f7cfb57fae1a65915187 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 26-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RGE_RS16200 7760e96fb6f4f7cfb57fae1a65915187 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 7.1E-32 T 26-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RGE_RS00030 9070aef4f4b35a559f5c829257d3ff5e 222 SUPERFAMILY SSF52141 17 203 1.28E-30 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS00030 9070aef4f4b35a559f5c829257d3ff5e 222 Pfam PF03167 Uracil DNA glycosylase superfamily 104 198 7.4E-9 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS00030 9070aef4f4b35a559f5c829257d3ff5e 222 Gene3D G3DSA:3.40.470.10 31 202 3.2E-8 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS20005 ccf8b319517da3c5543337659c5740e5 260 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 16 255 1.2E-67 T 26-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RGE_RS20005 ccf8b319517da3c5543337659c5740e5 260 SUPERFAMILY SSF63892 15 256 2.35E-82 T 26-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RGE_RS20005 ccf8b319517da3c5543337659c5740e5 260 PANTHER PTHR30456:SF0 13 260 2.8E-97 T 26-04-2016 RGE_RS20005 ccf8b319517da3c5543337659c5740e5 260 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 16 253 5.5E-88 T 26-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RGE_RS20005 ccf8b319517da3c5543337659c5740e5 260 Gene3D G3DSA:3.20.20.70 15 257 1.0E-90 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS20005 ccf8b319517da3c5543337659c5740e5 260 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 259 83.323 T 26-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RGE_RS20005 ccf8b319517da3c5543337659c5740e5 260 PANTHER PTHR30456 13 260 2.8E-97 T 26-04-2016 RGE_RS15050 108b85dce390e519d650d612b511b8fe 328 SUPERFAMILY SSF53850 118 290 3.88E-12 T 26-04-2016 RGE_RS15050 108b85dce390e519d650d612b511b8fe 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 51 322 1.6E-88 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS15050 108b85dce390e519d650d612b511b8fe 328 PANTHER PTHR30349:SF16 12 285 4.6E-92 T 26-04-2016 RGE_RS15050 108b85dce390e519d650d612b511b8fe 328 PIRSF PIRSF017082 5 327 9.8E-83 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS15050 108b85dce390e519d650d612b511b8fe 328 PANTHER PTHR30349 12 285 4.6E-92 T 26-04-2016 RGE_RS13250 3efcf56471cb182669dc99bf3b754b65 378 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 4 368 3.7E-96 T 26-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RGE_RS13250 3efcf56471cb182669dc99bf3b754b65 378 Gene3D G3DSA:3.40.50.2000 155 284 1.2E-7 T 26-04-2016 RGE_RS13250 3efcf56471cb182669dc99bf3b754b65 378 SUPERFAMILY SSF53756 1 374 4.03E-30 T 26-04-2016 RGE_RS13250 3efcf56471cb182669dc99bf3b754b65 378 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 1 375 35.418 T 26-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RGE_RS13250 3efcf56471cb182669dc99bf3b754b65 378 PANTHER PTHR30372 1 377 4.7E-103 T 26-04-2016 RGE_RS13250 3efcf56471cb182669dc99bf3b754b65 378 Pfam PF02684 Lipid-A-disaccharide synthetase 4 365 1.8E-95 T 26-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RGE_RS13250 3efcf56471cb182669dc99bf3b754b65 378 PANTHER PTHR30372:SF0 1 377 4.7E-103 T 26-04-2016 RGE_RS11645 b583ff0b95c51399ea4b0d767b6863fa 307 Gene3D G3DSA:3.40.190.10 98 180 1.5E-32 T 26-04-2016 RGE_RS11645 b583ff0b95c51399ea4b0d767b6863fa 307 Gene3D G3DSA:3.40.190.10 279 306 1.5E-32 T 26-04-2016 RGE_RS11645 b583ff0b95c51399ea4b0d767b6863fa 307 SUPERFAMILY SSF53850 98 300 5.43E-43 T 26-04-2016 RGE_RS11645 b583ff0b95c51399ea4b0d767b6863fa 307 PANTHER PTHR30118:SF7 5 304 1.1E-113 T 26-04-2016 RGE_RS11645 b583ff0b95c51399ea4b0d767b6863fa 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 74 9.9E-16 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS11645 b583ff0b95c51399ea4b0d767b6863fa 307 Gene3D G3DSA:3.40.190.10 181 275 8.1E-26 T 26-04-2016 RGE_RS11645 b583ff0b95c51399ea4b0d767b6863fa 307 Gene3D G3DSA:1.10.10.10 10 94 2.8E-27 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11645 b583ff0b95c51399ea4b0d767b6863fa 307 PANTHER PTHR30118 5 304 1.1E-113 T 26-04-2016 RGE_RS11645 b583ff0b95c51399ea4b0d767b6863fa 307 SUPERFAMILY SSF46785 12 92 3.98E-17 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11645 b583ff0b95c51399ea4b0d767b6863fa 307 Pfam PF03466 LysR substrate binding domain 103 303 6.4E-32 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS11645 b583ff0b95c51399ea4b0d767b6863fa 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 52 7.5E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS11645 b583ff0b95c51399ea4b0d767b6863fa 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 42 7.5E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS09125 6ef868502a6c84a60b632822cff9cc6a 268 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 259 2.9E-80 T 26-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RGE_RS09125 6ef868502a6c84a60b632822cff9cc6a 268 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 4 260 3.7E-82 T 26-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RGE_RS09125 6ef868502a6c84a60b632822cff9cc6a 268 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 264 19.281 T 26-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RGE_RS09125 6ef868502a6c84a60b632822cff9cc6a 268 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 141 153 - T 26-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RGE_RS09125 6ef868502a6c84a60b632822cff9cc6a 268 PANTHER PTHR30589 1 262 3.2E-98 T 26-04-2016 RGE_RS09125 6ef868502a6c84a60b632822cff9cc6a 268 PANTHER PTHR30589:SF0 1 262 3.2E-98 T 26-04-2016 RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 SMART SM00448 2 115 1.3E-13 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 PANTHER PTHR26402:SF151 2 212 3.7E-46 T 26-04-2016 RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 5.9E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 5.9E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 5.9E-9 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 Pfam PF00072 Response regulator receiver domain 4 114 5.2E-15 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 Gene3D G3DSA:3.40.50.2300 2 120 4.6E-20 T 26-04-2016 RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 Gene3D G3DSA:1.10.10.10 121 213 1.5E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 SUPERFAMILY SSF46894 145 213 1.16E-18 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 SMART SM00421 150 207 2.1E-17 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 SUPERFAMILY SSF52172 1 134 4.27E-22 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 6.6E-15 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS21585 1f4cf18d30f8c0c97a6c9070abc72e71 214 PANTHER PTHR26402 2 212 3.7E-46 T 26-04-2016 RGE_RS18680 0a45600de66c3dd719cde2636321bbf4 416 PANTHER PTHR35004 2 407 1.4E-78 T 26-04-2016 RGE_RS18680 0a45600de66c3dd719cde2636321bbf4 416 Pfam PF00665 Integrase core domain 116 244 3.2E-20 T 26-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RGE_RS18680 0a45600de66c3dd719cde2636321bbf4 416 PANTHER PTHR35004:SF2 2 407 1.4E-78 T 26-04-2016 RGE_RS18680 0a45600de66c3dd719cde2636321bbf4 416 SUPERFAMILY SSF53098 116 286 3.98E-16 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS18680 0a45600de66c3dd719cde2636321bbf4 416 SUPERFAMILY SSF46689 8 96 5.47E-7 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS18680 0a45600de66c3dd719cde2636321bbf4 416 Gene3D G3DSA:1.10.10.60 9 34 9.4E-4 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS18680 0a45600de66c3dd719cde2636321bbf4 416 Gene3D G3DSA:3.30.420.10 116 281 1.4E-16 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS08020 0a45600de66c3dd719cde2636321bbf4 416 PANTHER PTHR35004 2 407 1.4E-78 T 26-04-2016 RGE_RS08020 0a45600de66c3dd719cde2636321bbf4 416 Pfam PF00665 Integrase core domain 116 244 3.2E-20 T 26-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RGE_RS08020 0a45600de66c3dd719cde2636321bbf4 416 PANTHER PTHR35004:SF2 2 407 1.4E-78 T 26-04-2016 RGE_RS08020 0a45600de66c3dd719cde2636321bbf4 416 SUPERFAMILY SSF53098 116 286 3.98E-16 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS08020 0a45600de66c3dd719cde2636321bbf4 416 SUPERFAMILY SSF46689 8 96 5.47E-7 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS08020 0a45600de66c3dd719cde2636321bbf4 416 Gene3D G3DSA:1.10.10.60 9 34 9.4E-4 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS08020 0a45600de66c3dd719cde2636321bbf4 416 Gene3D G3DSA:3.30.420.10 116 281 1.4E-16 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS08740 0a45600de66c3dd719cde2636321bbf4 416 PANTHER PTHR35004 2 407 1.4E-78 T 26-04-2016 RGE_RS08740 0a45600de66c3dd719cde2636321bbf4 416 Pfam PF00665 Integrase core domain 116 244 3.2E-20 T 26-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RGE_RS08740 0a45600de66c3dd719cde2636321bbf4 416 PANTHER PTHR35004:SF2 2 407 1.4E-78 T 26-04-2016 RGE_RS08740 0a45600de66c3dd719cde2636321bbf4 416 SUPERFAMILY SSF53098 116 286 3.98E-16 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS08740 0a45600de66c3dd719cde2636321bbf4 416 SUPERFAMILY SSF46689 8 96 5.47E-7 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS08740 0a45600de66c3dd719cde2636321bbf4 416 Gene3D G3DSA:1.10.10.60 9 34 9.4E-4 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS08740 0a45600de66c3dd719cde2636321bbf4 416 Gene3D G3DSA:3.30.420.10 116 281 1.4E-16 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS03360 0a45600de66c3dd719cde2636321bbf4 416 PANTHER PTHR35004 2 407 1.4E-78 T 26-04-2016 RGE_RS03360 0a45600de66c3dd719cde2636321bbf4 416 Pfam PF00665 Integrase core domain 116 244 3.2E-20 T 26-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RGE_RS03360 0a45600de66c3dd719cde2636321bbf4 416 PANTHER PTHR35004:SF2 2 407 1.4E-78 T 26-04-2016 RGE_RS03360 0a45600de66c3dd719cde2636321bbf4 416 SUPERFAMILY SSF53098 116 286 3.98E-16 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS03360 0a45600de66c3dd719cde2636321bbf4 416 SUPERFAMILY SSF46689 8 96 5.47E-7 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS03360 0a45600de66c3dd719cde2636321bbf4 416 Gene3D G3DSA:1.10.10.60 9 34 9.4E-4 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS03360 0a45600de66c3dd719cde2636321bbf4 416 Gene3D G3DSA:3.30.420.10 116 281 1.4E-16 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS08605 bd7005c4327c423ea5bf72f483ebabf7 604 PANTHER PTHR30252 3 550 6.2E-233 T 26-04-2016 RGE_RS08605 bd7005c4327c423ea5bf72f483ebabf7 604 PANTHER PTHR30252:SF3 3 550 6.2E-233 T 26-04-2016 RGE_RS08605 bd7005c4327c423ea5bf72f483ebabf7 604 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 417 538 4.6E-27 T 26-04-2016 IPR025299 CstA, C-terminal domain RGE_RS08605 bd7005c4327c423ea5bf72f483ebabf7 604 Pfam PF02554 Carbon starvation protein CstA 4 368 1.2E-136 T 26-04-2016 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 RGE_RS07795 899abe0a9249137b71d7ce3981d5f60d 395 PIRSF PIRSF004925 3 394 6.3E-87 T 26-04-2016 IPR026032 Probable 3-phenylpropionic acid transporter RGE_RS07795 899abe0a9249137b71d7ce3981d5f60d 395 SUPERFAMILY SSF103473 9 381 7.72E-41 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS07795 899abe0a9249137b71d7ce3981d5f60d 395 Pfam PF12832 MFS_1 like family 13 365 7.2E-55 T 26-04-2016 IPR024989 Major facilitator superfamily associated domain RGE_RS07795 899abe0a9249137b71d7ce3981d5f60d 395 Gene3D G3DSA:1.20.1250.20 9 184 2.0E-15 T 26-04-2016 RGE_RS07795 899abe0a9249137b71d7ce3981d5f60d 395 Gene3D G3DSA:1.20.1250.20 200 379 5.1E-23 T 26-04-2016 RGE_RS07795 899abe0a9249137b71d7ce3981d5f60d 395 PANTHER PTHR23522:SF3 1 382 2.2E-63 T 26-04-2016 RGE_RS07795 899abe0a9249137b71d7ce3981d5f60d 395 PANTHER PTHR23522 1 382 2.2E-63 T 26-04-2016 RGE_RS01545 932e42f3187f5fa6509a08a59c80e08e 192 PANTHER PTHR30265 17 192 1.2E-73 T 26-04-2016 RGE_RS01545 932e42f3187f5fa6509a08a59c80e08e 192 PRINTS PR00338 Transcription termination factor NUSG signature 150 165 1.1E-17 T 26-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RGE_RS01545 932e42f3187f5fa6509a08a59c80e08e 192 PRINTS PR00338 Transcription termination factor NUSG signature 72 84 1.1E-17 T 26-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RGE_RS01545 932e42f3187f5fa6509a08a59c80e08e 192 PRINTS PR00338 Transcription termination factor NUSG signature 168 184 1.1E-17 T 26-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RGE_RS01545 932e42f3187f5fa6509a08a59c80e08e 192 Gene3D G3DSA:2.30.30.30 131 192 5.6E-28 T 26-04-2016 IPR014722 Ribosomal protein L2 domain 2 RGE_RS01545 932e42f3187f5fa6509a08a59c80e08e 192 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 17 192 24.59 T 26-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RGE_RS01545 932e42f3187f5fa6509a08a59c80e08e 192 SUPERFAMILY SSF50104 136 192 5.01E-18 T 26-04-2016 IPR008991 Translation protein SH3-like domain RGE_RS01545 932e42f3187f5fa6509a08a59c80e08e 192 SUPERFAMILY SSF82679 18 128 5.62E-38 T 26-04-2016 IPR006645 NusG, N-terminal GO:0006355 RGE_RS01545 932e42f3187f5fa6509a08a59c80e08e 192 Pfam PF02357 Transcription termination factor nusG 18 122 1.5E-26 T 26-04-2016 IPR006645 NusG, N-terminal GO:0006355 RGE_RS01545 932e42f3187f5fa6509a08a59c80e08e 192 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 20 192 5.9E-67 T 26-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RGE_RS01545 932e42f3187f5fa6509a08a59c80e08e 192 SMART SM00738 17 126 2.1E-45 T 26-04-2016 IPR006645 NusG, N-terminal GO:0006355 RGE_RS01545 932e42f3187f5fa6509a08a59c80e08e 192 Gene3D G3DSA:3.30.70.940 18 129 5.3E-45 T 26-04-2016 IPR006645 NusG, N-terminal GO:0006355 RGE_RS20105 f5ab8f27fea9bb412da55a4563bc2ce1 196 SUPERFAMILY SSF52972 2 188 3.4E-56 T 26-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RGE_RS20105 f5ab8f27fea9bb412da55a4563bc2ce1 196 Hamap MF_00528 Septum formation protein Maf [maf]. 5 193 28.485 T 26-04-2016 IPR003697 Maf-like protein GO:0005737 RGE_RS20105 f5ab8f27fea9bb412da55a4563bc2ce1 196 Pfam PF02545 Maf-like protein 6 188 6.0E-43 T 26-04-2016 IPR003697 Maf-like protein GO:0005737 RGE_RS20105 f5ab8f27fea9bb412da55a4563bc2ce1 196 Gene3D G3DSA:3.90.950.10 4 191 1.8E-55 T 26-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RGE_RS20105 f5ab8f27fea9bb412da55a4563bc2ce1 196 TIGRFAM TIGR00172 maf: septum formation protein Maf 4 187 8.3E-45 T 26-04-2016 IPR003697 Maf-like protein GO:0005737 RGE_RS20105 f5ab8f27fea9bb412da55a4563bc2ce1 196 PANTHER PTHR11746 124 192 3.8E-22 T 26-04-2016 RGE_RS20105 f5ab8f27fea9bb412da55a4563bc2ce1 196 PANTHER PTHR11746:SF102 124 192 3.8E-22 T 26-04-2016 RGE_RS20105 f5ab8f27fea9bb412da55a4563bc2ce1 196 PIRSF PIRSF006305 1 195 2.4E-42 T 26-04-2016 IPR003697 Maf-like protein GO:0005737 RGE_RS04150 64a716989b73e36ee0e0895947dc01d6 359 Pfam PF10023 Putative aminopeptidase 25 349 1.5E-137 T 26-04-2016 IPR014553 Predicted aminopeptidase RGE_RS04150 64a716989b73e36ee0e0895947dc01d6 359 PIRSF PIRSF029285 2 356 8.4E-132 T 26-04-2016 IPR014553 Predicted aminopeptidase RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 Pfam PF00990 Diguanylate cyclase, GGDEF domain 269 428 7.0E-43 T 26-04-2016 IPR000160 GGDEF domain RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 SMART SM00267 257 433 1.5E-51 T 26-04-2016 IPR000160 GGDEF domain RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 SUPERFAMILY SSF55073 273 434 2.51E-42 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 Pfam PF13188 PAS domain 39 79 4.1E-4 T 26-04-2016 IPR000014 PAS domain RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 266 430 1.3E-39 T 26-04-2016 IPR000160 GGDEF domain RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 Gene3D G3DSA:3.30.450.20 39 144 2.8E-5 T 26-04-2016 RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 SUPERFAMILY SSF141868 448 692 3.53E-77 T 26-04-2016 IPR001633 EAL domain RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 SMART SM00052 443 685 2.5E-87 T 26-04-2016 IPR001633 EAL domain RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 Gene3D G3DSA:3.30.70.270 269 438 4.0E-51 T 26-04-2016 RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 Gene3D G3DSA:3.20.20.450 446 691 2.1E-85 T 26-04-2016 IPR001633 EAL domain RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 PANTHER PTHR10799:SF774 163 543 2.1E-76 T 26-04-2016 RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 Pfam PF00563 EAL domain 449 679 1.1E-65 T 26-04-2016 IPR001633 EAL domain RGE_RS18600 c9136bd125d54a5a3d63d33f93102fb4 703 PANTHER PTHR10799 163 543 2.1E-76 T 26-04-2016 RGE_RS17995 34504752f70be60bbeb258ba3a78aa07 256 Pfam PF01925 Sulfite exporter TauE/SafE 21 250 8.8E-26 T 26-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RGE_RS17995 34504752f70be60bbeb258ba3a78aa07 256 PANTHER PTHR30269 12 251 4.9E-21 T 26-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RGE_RS17995 34504752f70be60bbeb258ba3a78aa07 256 PANTHER PTHR30269:SF24 12 251 4.9E-21 T 26-04-2016 RGE_RS01695 2bac8adc0e0972f3997271ae5a64ec09 120 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 120 25.594 T 26-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01695 2bac8adc0e0972f3997271ae5a64ec09 120 PANTHER PTHR12899 1 120 9.1E-34 T 26-04-2016 RGE_RS01695 2bac8adc0e0972f3997271ae5a64ec09 120 SUPERFAMILY SSF53137 4 118 4.8E-48 T 26-04-2016 RGE_RS01695 2bac8adc0e0972f3997271ae5a64ec09 120 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 4 120 7.2E-35 T 26-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01695 2bac8adc0e0972f3997271ae5a64ec09 120 Gene3D G3DSA:3.30.420.100 24 120 9.4E-35 T 26-04-2016 RGE_RS01695 2bac8adc0e0972f3997271ae5a64ec09 120 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 2 120 1.8E-35 T 26-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13170 c2c84f53375bba81340c0b6468b90458 137 SMART SM00363 6 67 3.2E-7 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS13170 c2c84f53375bba81340c0b6468b90458 137 Gene3D G3DSA:3.10.290.10 4 101 2.6E-33 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS13170 c2c84f53375bba81340c0b6468b90458 137 Pfam PF01479 S4 domain 6 52 1.3E-9 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS13170 c2c84f53375bba81340c0b6468b90458 137 SUPERFAMILY SSF55174 5 102 7.07E-27 T 26-04-2016 RGE_RS13170 c2c84f53375bba81340c0b6468b90458 137 PANTHER PTHR11079 2 57 6.0E-12 T 26-04-2016 RGE_RS13170 c2c84f53375bba81340c0b6468b90458 137 PIRSF PIRSF016821 3 131 1.0E-40 T 26-04-2016 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 RGE_RS13170 c2c84f53375bba81340c0b6468b90458 137 PANTHER PTHR11079:SF70 2 57 6.0E-12 T 26-04-2016 RGE_RS21915 a3d36f3b2462ba27ef14814ee63aa13b 475 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 47 206 6.0E-16 T 26-04-2016 RGE_RS19070 1718c764e4d122a124131543b121485d 154 Gene3D G3DSA:3.40.50.960 6 151 1.6E-53 T 26-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS19070 1718c764e4d122a124131543b121485d 154 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 17 149 2.5E-37 T 26-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS19070 1718c764e4d122a124131543b121485d 154 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 12 153 26.391 T 26-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS19070 1718c764e4d122a124131543b121485d 154 SUPERFAMILY SSF52121 12 153 5.1E-51 T 26-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS19070 1718c764e4d122a124131543b121485d 154 PANTHER PTHR21058 1 153 3.2E-52 T 26-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS19070 1718c764e4d122a124131543b121485d 154 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 16 150 8.5E-48 T 26-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS20705 ff365d654de26b47b8c08b13a4148c91 104 PANTHER PTHR10293 2 104 1.6E-66 T 26-04-2016 IPR004480 Monothiol glutaredoxin-related RGE_RS20705 ff365d654de26b47b8c08b13a4148c91 104 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 102 3.0E-46 T 26-04-2016 IPR004480 Monothiol glutaredoxin-related RGE_RS20705 ff365d654de26b47b8c08b13a4148c91 104 Pfam PF00462 Glutaredoxin 17 82 5.2E-19 T 26-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RGE_RS20705 ff365d654de26b47b8c08b13a4148c91 104 PIRSF PIRSF005894 1 104 7.6E-49 T 26-04-2016 IPR014434 Monothiol glutaredoxin RGE_RS20705 ff365d654de26b47b8c08b13a4148c91 104 SUPERFAMILY SSF52833 1 103 3.45E-35 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20705 ff365d654de26b47b8c08b13a4148c91 104 Gene3D G3DSA:3.40.30.10 7 103 4.6E-35 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS00280 44ecce89d95cfcad5de547b630f2e923 252 SUPERFAMILY SSF52540 1 251 2.48E-65 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00280 44ecce89d95cfcad5de547b630f2e923 252 Gene3D G3DSA:3.40.50.300 2 250 2.4E-70 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00280 44ecce89d95cfcad5de547b630f2e923 252 PANTHER PTHR13696 1 250 1.9E-86 T 26-04-2016 RGE_RS00280 44ecce89d95cfcad5de547b630f2e923 252 Pfam PF13614 AAA domain 1 175 7.4E-61 T 26-04-2016 IPR025669 AAA domain RGE_RS00280 44ecce89d95cfcad5de547b630f2e923 252 PANTHER PTHR13696:SF52 1 250 1.9E-86 T 26-04-2016 RGE_RS00280 44ecce89d95cfcad5de547b630f2e923 252 PRINTS PR00091 Nitrogenase component II signature 30 45 8.4E-5 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS00280 44ecce89d95cfcad5de547b630f2e923 252 PRINTS PR00091 Nitrogenase component II signature 8 21 8.4E-5 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS12380 4d168508d1bc59db281530546957b045 260 SUPERFAMILY SSF52540 6 213 2.72E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12380 4d168508d1bc59db281530546957b045 260 Pfam PF00005 ABC transporter 21 155 1.9E-29 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS12380 4d168508d1bc59db281530546957b045 260 PANTHER PTHR24220 7 240 1.1E-127 T 26-04-2016 RGE_RS12380 4d168508d1bc59db281530546957b045 260 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS12380 4d168508d1bc59db281530546957b045 260 Gene3D G3DSA:3.40.50.300 5 207 1.0E-63 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12380 4d168508d1bc59db281530546957b045 260 PANTHER PTHR24220:SF365 7 240 1.1E-127 T 26-04-2016 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB GO:0005215|GO:0005524|GO:0005886|GO:0006810 RGE_RS12380 4d168508d1bc59db281530546957b045 260 SMART SM00382 30 218 1.7E-16 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS12985 ffbdac1ca2a8a83975bd3e50c7704447 550 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 185 278 1.6E-12 T 26-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RGE_RS12985 ffbdac1ca2a8a83975bd3e50c7704447 550 SUPERFAMILY SSF47203 295 447 7.41E-36 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS12985 ffbdac1ca2a8a83975bd3e50c7704447 550 SUPERFAMILY SSF56645 79 299 2.68E-33 T 26-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RGE_RS12985 ffbdac1ca2a8a83975bd3e50c7704447 550 Gene3D G3DSA:2.40.110.10 185 280 1.2E-16 T 26-04-2016 RGE_RS12985 ffbdac1ca2a8a83975bd3e50c7704447 550 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 290 444 7.9E-27 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS12985 ffbdac1ca2a8a83975bd3e50c7704447 550 Gene3D G3DSA:1.20.140.10 281 448 1.6E-34 T 26-04-2016 RGE_RS12985 ffbdac1ca2a8a83975bd3e50c7704447 550 PANTHER PTHR10909:SF289 28 464 8.3E-184 T 26-04-2016 RGE_RS12985 ffbdac1ca2a8a83975bd3e50c7704447 550 PANTHER PTHR10909 28 464 8.3E-184 T 26-04-2016 RGE_RS12985 ffbdac1ca2a8a83975bd3e50c7704447 550 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 403 422 - T 26-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 736 763 - T 26-04-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 Pfam PF01568 Molydopterin dinucleotide binding domain 700 811 3.3E-27 T 26-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 62 121 1.0E-9 T 26-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 Gene3D G3DSA:3.40.50.740 414 658 1.2E-65 T 26-04-2016 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 Gene3D G3DSA:3.40.50.740 126 204 1.2E-65 T 26-04-2016 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 Pfam PF00384 Molybdopterin oxidoreductase 124 577 1.2E-79 T 26-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 PANTHER PTHR11615 8 322 2.9E-300 T 26-04-2016 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 PANTHER PTHR11615 354 819 2.9E-300 T 26-04-2016 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 SUPERFAMILY SSF50692 645 819 8.14E-40 T 26-04-2016 IPR009010 Aspartate decarboxylase-like domain RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 Gene3D G3DSA:3.40.228.10 205 413 3.7E-65 T 26-04-2016 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 SUPERFAMILY SSF53706 61 702 2.36E-159 T 26-04-2016 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 PANTHER PTHR11615:SF128 8 322 2.9E-300 T 26-04-2016 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 PANTHER PTHR11615:SF128 354 819 2.9E-300 T 26-04-2016 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 Gene3D G3DSA:2.20.25.90 58 125 4.2E-13 T 26-04-2016 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 SMART SM00926 59 121 2.6E-6 T 26-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 17 819 0.0 T 26-04-2016 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 RGE_RS09915 f376dbbc91cd5701b3bceeabcb9b26e2 819 Gene3D G3DSA:2.40.40.20 674 819 6.8E-53 T 26-04-2016 RGE_RS16565 765539acc392d790e571c46146ae5219 185 Pfam PF14803 Nudix N-terminal 6 39 4.9E-8 T 26-04-2016 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.-+3.6.1.13|KEGG: 00332+3.6.1.-|KEGG: 00740+3.6.1.18|KEGG: 00790+3.6.1.- RGE_RS16565 765539acc392d790e571c46146ae5219 185 PANTHER PTHR22769 6 149 7.9E-21 T 26-04-2016 RGE_RS16565 765539acc392d790e571c46146ae5219 185 Gene3D G3DSA:3.90.79.10 35 166 1.6E-24 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS16565 765539acc392d790e571c46146ae5219 185 SUPERFAMILY SSF55811 6 166 9.75E-29 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS16565 765539acc392d790e571c46146ae5219 185 Gene3D G3DSA:2.20.70.10 6 34 6.9E-4 T 26-04-2016 RGE_RS16565 765539acc392d790e571c46146ae5219 185 ProSitePatterns PS00893 Nudix box signature. 78 99 - T 26-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RGE_RS16565 765539acc392d790e571c46146ae5219 185 Pfam PF00293 NUDIX domain 48 148 3.5E-13 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS21335 37eea355c62d90a774e0ee5c57d1f5bb 252 Pfam PF03309 Type III pantothenate kinase 3 204 3.9E-57 T 26-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RGE_RS21335 37eea355c62d90a774e0ee5c57d1f5bb 252 Gene3D G3DSA:3.30.420.40 90 249 7.5E-40 T 26-04-2016 RGE_RS21335 37eea355c62d90a774e0ee5c57d1f5bb 252 SUPERFAMILY SSF53067 3 116 1.46E-26 T 26-04-2016 RGE_RS21335 37eea355c62d90a774e0ee5c57d1f5bb 252 Hamap MF_01274 Type III pantothenate kinase [coaX]. 2 252 16.451 T 26-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RGE_RS21335 37eea355c62d90a774e0ee5c57d1f5bb 252 SUPERFAMILY SSF53067 125 248 5.92E-28 T 26-04-2016 RGE_RS21335 37eea355c62d90a774e0ee5c57d1f5bb 252 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 3 245 7.6E-27 T 26-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RGE_RS21335 37eea355c62d90a774e0ee5c57d1f5bb 252 PANTHER PTHR34265 1 248 7.2E-36 T 26-04-2016 RGE_RS10140 98bd57f6092ddd01340575badd5d2229 108 PANTHER PTHR33154:SF5 1 101 1.3E-27 T 26-04-2016 RGE_RS10140 98bd57f6092ddd01340575badd5d2229 108 PANTHER PTHR33154 1 101 1.3E-27 T 26-04-2016 RGE_RS10140 98bd57f6092ddd01340575badd5d2229 108 SMART SM00418 8 88 4.4E-13 T 26-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RGE_RS10140 98bd57f6092ddd01340575badd5d2229 108 SUPERFAMILY SSF46785 3 93 3.23E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10140 98bd57f6092ddd01340575badd5d2229 108 Pfam PF12840 Helix-turn-helix domain 9 69 2.5E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10140 98bd57f6092ddd01340575badd5d2229 108 Gene3D G3DSA:1.10.10.10 1 99 2.3E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10140 98bd57f6092ddd01340575badd5d2229 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 6.6E-8 T 26-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RGE_RS10140 98bd57f6092ddd01340575badd5d2229 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 6.6E-8 T 26-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RGE_RS10140 98bd57f6092ddd01340575badd5d2229 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 6.6E-8 T 26-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RGE_RS16355 a427e58c498dbf8d4eb10db53fe3c3fd 344 PANTHER PTHR31480 7 297 1.0E-75 T 26-04-2016 RGE_RS16355 a427e58c498dbf8d4eb10db53fe3c3fd 344 PANTHER PTHR31480:SF0 7 297 1.0E-75 T 26-04-2016 RGE_RS16355 a427e58c498dbf8d4eb10db53fe3c3fd 344 Gene3D G3DSA:1.10.600.10 7 282 1.7E-75 T 26-04-2016 IPR008949 Isoprenoid synthase domain RGE_RS16355 a427e58c498dbf8d4eb10db53fe3c3fd 344 Pfam PF00494 Squalene/phytoene synthase 19 270 9.9E-69 T 26-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 RGE_RS16355 a427e58c498dbf8d4eb10db53fe3c3fd 344 SUPERFAMILY SSF48576 11 283 4.6E-78 T 26-04-2016 IPR008949 Isoprenoid synthase domain RGE_RS16355 a427e58c498dbf8d4eb10db53fe3c3fd 344 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 157 182 - T 26-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 RGE_RS08540 c1458f0852f6bbfc76f75c5cebd16036 310 Pfam PF00669 Bacterial flagellin N-terminal helical region 9 141 2.8E-18 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS08540 c1458f0852f6bbfc76f75c5cebd16036 310 SUPERFAMILY SSF64518 1 308 3.79E-53 T 26-04-2016 RGE_RS08540 c1458f0852f6bbfc76f75c5cebd16036 310 PANTHER PTHR30244:SF5 2 308 5.7E-44 T 26-04-2016 RGE_RS08540 c1458f0852f6bbfc76f75c5cebd16036 310 PANTHER PTHR30244 2 308 5.7E-44 T 26-04-2016 RGE_RS08540 c1458f0852f6bbfc76f75c5cebd16036 310 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 4 164 3.3E-42 T 26-04-2016 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 RGE_RS08540 c1458f0852f6bbfc76f75c5cebd16036 310 Gene3D G3DSA:1.20.1330.10 65 148 3.1E-18 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS08540 c1458f0852f6bbfc76f75c5cebd16036 310 Gene3D G3DSA:1.20.1330.10 187 261 3.1E-18 T 26-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RGE_RS16235 4f38b0bdf0635806199f925bf17a4851 270 Gene3D G3DSA:3.40.50.150 66 268 1.6E-51 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16235 4f38b0bdf0635806199f925bf17a4851 270 PANTHER PTHR11579 49 265 9.5E-52 T 26-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RGE_RS16235 4f38b0bdf0635806199f925bf17a4851 270 SUPERFAMILY SSF53335 69 266 1.06E-33 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16235 4f38b0bdf0635806199f925bf17a4851 270 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 60 268 5.6E-50 T 26-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RGE_RS16235 4f38b0bdf0635806199f925bf17a4851 270 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 59 268 6.7E-50 T 26-04-2016 RGE_RS12635 a25c29062d289251718458991c44a93e 352 PANTHER PTHR30349 2 64 4.7E-12 T 26-04-2016 RGE_RS12635 a25c29062d289251718458991c44a93e 352 PANTHER PTHR30349 92 352 4.7E-12 T 26-04-2016 RGE_RS12635 a25c29062d289251718458991c44a93e 352 SUPERFAMILY SSF47823 12 60 2.75E-12 T 26-04-2016 IPR010998 Integrase, Lambda-type, N-terminal RGE_RS12635 a25c29062d289251718458991c44a93e 352 SUPERFAMILY SSF47823 89 137 2.75E-12 T 26-04-2016 IPR010998 Integrase, Lambda-type, N-terminal RGE_RS12635 a25c29062d289251718458991c44a93e 352 Gene3D G3DSA:1.10.443.10 144 325 6.6E-42 T 26-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS12635 a25c29062d289251718458991c44a93e 352 Pfam PF00589 Phage integrase family 147 325 1.8E-13 T 26-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS12635 a25c29062d289251718458991c44a93e 352 SUPERFAMILY SSF56349 143 336 8.54E-35 T 26-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RGE_RS12635 a25c29062d289251718458991c44a93e 352 Gene3D G3DSA:1.10.150.130 12 138 1.4E-18 T 26-04-2016 IPR023109 Integrase/recombinase, N-terminal RGE_RS05050 3c7dab35a02bd1ae15c0aa0fba823f53 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 56 3.1E-5 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS05050 3c7dab35a02bd1ae15c0aa0fba823f53 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 64 87 3.1E-5 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS05050 3c7dab35a02bd1ae15c0aa0fba823f53 223 SUPERFAMILY SSF46689 30 104 1.44E-12 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS05050 3c7dab35a02bd1ae15c0aa0fba823f53 223 PANTHER PTHR30055:SF58 25 215 4.8E-63 T 26-04-2016 RGE_RS05050 3c7dab35a02bd1ae15c0aa0fba823f53 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 43 87 1.4E-10 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS05050 3c7dab35a02bd1ae15c0aa0fba823f53 223 Gene3D G3DSA:1.10.357.10 31 221 6.7E-42 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS05050 3c7dab35a02bd1ae15c0aa0fba823f53 223 PANTHER PTHR30055 25 215 4.8E-63 T 26-04-2016 RGE_RS05050 3c7dab35a02bd1ae15c0aa0fba823f53 223 SUPERFAMILY SSF48498 109 221 7.12E-9 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS04240 60d4f4a7485a2e68df420b80f919eebc 197 PANTHER PTHR18895:SF60 2 186 3.7E-32 T 26-04-2016 RGE_RS04240 60d4f4a7485a2e68df420b80f919eebc 197 Pfam PF03602 Conserved hypothetical protein 95 12 184 2.4E-43 T 26-04-2016 RGE_RS04240 60d4f4a7485a2e68df420b80f919eebc 197 PIRSF PIRSF004553 11 187 5.5E-41 T 26-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS04240 60d4f4a7485a2e68df420b80f919eebc 197 Gene3D G3DSA:3.40.50.150 5 186 1.3E-53 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS04240 60d4f4a7485a2e68df420b80f919eebc 197 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 11 186 1.4E-39 T 26-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS04240 60d4f4a7485a2e68df420b80f919eebc 197 SUPERFAMILY SSF53335 12 185 6.06E-41 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS04240 60d4f4a7485a2e68df420b80f919eebc 197 PANTHER PTHR18895 2 186 3.7E-32 T 26-04-2016 RGE_RS13740 8953d3a61893ca7cdc26fb3ec49a6cc8 441 PANTHER PTHR10566 5 437 2.9E-121 T 26-04-2016 RGE_RS13740 8953d3a61893ca7cdc26fb3ec49a6cc8 441 PANTHER PTHR10566:SF65 5 437 2.9E-121 T 26-04-2016 RGE_RS13740 8953d3a61893ca7cdc26fb3ec49a6cc8 441 SUPERFAMILY SSF56112 102 164 4.85E-19 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS13740 8953d3a61893ca7cdc26fb3ec49a6cc8 441 SUPERFAMILY SSF56112 200 380 4.85E-19 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS13740 8953d3a61893ca7cdc26fb3ec49a6cc8 441 Pfam PF03109 ABC1 family 119 233 2.2E-27 T 26-04-2016 IPR004147 UbiB domain RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 Pfam PF04851 Type III restriction enzyme, res subunit 56 156 2.1E-8 T 26-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 Gene3D G3DSA:3.40.50.300 297 357 1.5E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 Gene3D G3DSA:3.40.50.300 26 108 1.5E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 Gene3D G3DSA:3.40.50.300 407 428 1.5E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 Gene3D G3DSA:3.40.50.300 437 595 1.4E-39 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 Pfam PF00271 Helicase conserved C-terminal domain 452 563 4.2E-19 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 PANTHER PTHR24029 18 703 0.0 T 26-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 SMART SM00487 28 444 1.3E-28 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 Gene3D G3DSA:4.10.860.10 641 683 4.2E-17 T 26-04-2016 IPR001943 UVR domain GO:0005515 RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 24 678 0.0 T 26-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 SMART SM00490 478 564 2.2E-19 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 SUPERFAMILY SSF52540 23 433 5.79E-132 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 Pfam PF02151 UvrB/uvrC motif 647 681 7.1E-10 T 26-04-2016 IPR001943 UVR domain GO:0005515 RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 Hamap MF_00204 UvrABC system protein B [uvrB]. 22 681 43.487 T 26-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 Gene3D G3DSA:3.30.2060.10 180 250 3.5E-9 T 26-04-2016 RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 Pfam PF12344 Ultra-violet resistance protein B 570 612 1.6E-21 T 26-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 SUPERFAMILY SSF46600 635 682 3.92E-12 T 26-04-2016 IPR001943 UVR domain GO:0005515 RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 SUPERFAMILY SSF52540 56 101 6.63E-37 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07560 e1f642ed202f1523f13aff7f0a56f45b 703 SUPERFAMILY SSF52540 477 603 6.63E-37 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04400 7c5338854fdc08b7d4ba3da5da71bb6a 133 PANTHER PTHR28620 13 117 4.3E-37 T 26-04-2016 RGE_RS04400 7c5338854fdc08b7d4ba3da5da71bb6a 133 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 38 112 4.9E-10 T 26-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RGE_RS04400 7c5338854fdc08b7d4ba3da5da71bb6a 133 Gene3D G3DSA:3.90.1590.10 17 110 2.7E-18 T 26-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RGE_RS04400 7c5338854fdc08b7d4ba3da5da71bb6a 133 SUPERFAMILY SSF51316 13 131 7.11E-31 T 26-04-2016 IPR011057 Mss4-like RGE_RS16725 6a1db14083435f740490240758d903df 87 Gene3D G3DSA:3.10.20.30 3 84 1.7E-14 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS16725 6a1db14083435f740490240758d903df 87 SUPERFAMILY SSF54285 4 87 3.31E-10 T 26-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RGE_RS04515 8ef0c66a861d3fbd462121ea8e42aa89 257 PANTHER PTHR11941 10 254 4.6E-89 T 26-04-2016 RGE_RS04515 8ef0c66a861d3fbd462121ea8e42aa89 257 PANTHER PTHR11941:SF17 10 254 4.6E-89 T 26-04-2016 RGE_RS04515 8ef0c66a861d3fbd462121ea8e42aa89 257 SUPERFAMILY SSF52096 10 255 2.13E-73 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS04515 8ef0c66a861d3fbd462121ea8e42aa89 257 Gene3D G3DSA:3.90.226.10 3 254 9.3E-75 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS04515 8ef0c66a861d3fbd462121ea8e42aa89 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 255 3.5E-54 T 26-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RGE_RS22220 86be862537b9e9a1b5d2dd211dc91891 422 PANTHER PTHR21327 12 422 3.3E-215 T 26-04-2016 RGE_RS22220 86be862537b9e9a1b5d2dd211dc91891 422 Pfam PF12471 GTP cyclohydrolase N terminal 13 201 2.6E-79 T 26-04-2016 IPR022163 GTP cyclohydrolase N-terminal KEGG: 00791+3.5.4.- RGE_RS22220 86be862537b9e9a1b5d2dd211dc91891 422 PANTHER PTHR21327:SF16 12 422 3.3E-215 T 26-04-2016 RGE_RS22220 86be862537b9e9a1b5d2dd211dc91891 422 SUPERFAMILY SSF142695 207 380 1.96E-30 T 26-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RGE_RS22220 86be862537b9e9a1b5d2dd211dc91891 422 Pfam PF00925 GTP cyclohydrolase II 229 377 2.1E-15 T 26-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RGE_RS18930 a71f219c3eeea0591010841e069f09ed 219 PRINTS PR00478 Phosphoribulokinase family signature 159 176 3.5E-5 T 26-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RGE_RS18930 a71f219c3eeea0591010841e069f09ed 219 PRINTS PR00478 Phosphoribulokinase family signature 177 200 3.5E-5 T 26-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RGE_RS18930 a71f219c3eeea0591010841e069f09ed 219 PRINTS PR00478 Phosphoribulokinase family signature 125 143 3.5E-5 T 26-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RGE_RS18930 a71f219c3eeea0591010841e069f09ed 219 PRINTS PR00478 Phosphoribulokinase family signature 31 48 3.5E-5 T 26-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RGE_RS18930 a71f219c3eeea0591010841e069f09ed 219 Gene3D G3DSA:3.40.50.300 24 202 4.9E-36 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18930 a71f219c3eeea0591010841e069f09ed 219 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 26 202 6.7E-18 T 26-04-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 RGE_RS18930 a71f219c3eeea0591010841e069f09ed 219 PANTHER PTHR10285 18 202 2.3E-24 T 26-04-2016 RGE_RS18930 a71f219c3eeea0591010841e069f09ed 219 SUPERFAMILY SSF52540 22 200 3.72E-24 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03750 f9d9272d5ac8f04c650e585c5de83baf 298 SUPERFAMILY SSF161111 5 203 1.44E-54 T 26-04-2016 RGE_RS03750 f9d9272d5ac8f04c650e585c5de83baf 298 Gene3D G3DSA:1.20.1510.10 7 201 1.7E-46 T 26-04-2016 IPR027469 Cation efflux protein transmembrane domain RGE_RS03750 f9d9272d5ac8f04c650e585c5de83baf 298 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 5 274 6.0E-62 T 26-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RGE_RS03750 f9d9272d5ac8f04c650e585c5de83baf 298 Gene3D G3DSA:3.30.70.1350 202 284 1.7E-17 T 26-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RGE_RS03750 f9d9272d5ac8f04c650e585c5de83baf 298 SUPERFAMILY SSF160240 204 282 7.98E-13 T 26-04-2016 RGE_RS03750 f9d9272d5ac8f04c650e585c5de83baf 298 PANTHER PTHR11562:SF55 2 297 8.3E-76 T 26-04-2016 RGE_RS03750 f9d9272d5ac8f04c650e585c5de83baf 298 Pfam PF16916 Dimerisation domain of Zinc Transporter 223 278 4.2E-13 T 26-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RGE_RS03750 f9d9272d5ac8f04c650e585c5de83baf 298 PANTHER PTHR11562 2 297 8.3E-76 T 26-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RGE_RS03750 f9d9272d5ac8f04c650e585c5de83baf 298 Pfam PF01545 Cation efflux family 7 201 1.3E-42 T 26-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RGE_RS19395 5317499ac5c6e13ac905832e02adbb34 709 Gene3D G3DSA:2.40.170.20 178 708 2.8E-103 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS19395 5317499ac5c6e13ac905832e02adbb34 709 Gene3D G3DSA:2.170.130.10 34 171 5.9E-28 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS19395 5317499ac5c6e13ac905832e02adbb34 709 Pfam PF00593 TonB dependent receptor 482 708 2.6E-21 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS19395 5317499ac5c6e13ac905832e02adbb34 709 PANTHER PTHR32552 1 709 1.2E-128 T 26-04-2016 RGE_RS19395 5317499ac5c6e13ac905832e02adbb34 709 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 66 708 1.6E-76 T 26-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 RGE_RS19395 5317499ac5c6e13ac905832e02adbb34 709 PANTHER PTHR32552:SF37 1 709 1.2E-128 T 26-04-2016 RGE_RS19395 5317499ac5c6e13ac905832e02adbb34 709 SUPERFAMILY SSF56935 33 708 2.85E-104 T 26-04-2016 RGE_RS19395 5317499ac5c6e13ac905832e02adbb34 709 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 164 3.6E-11 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 1.3E-70 T 26-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 40.189 T 26-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 PRINTS PR01034 Ribosomal protein S12 signature 110 122 4.7E-61 T 26-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 PRINTS PR01034 Ribosomal protein S12 signature 58 77 4.7E-61 T 26-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 PRINTS PR01034 Ribosomal protein S12 signature 27 42 4.7E-61 T 26-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 PRINTS PR01034 Ribosomal protein S12 signature 77 94 4.7E-61 T 26-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 PRINTS PR01034 Ribosomal protein S12 signature 42 57 4.7E-61 T 26-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 PRINTS PR01034 Ribosomal protein S12 signature 94 110 4.7E-61 T 26-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 PIRSF PIRSF002133 1 124 4.7E-55 T 26-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 PANTHER PTHR11652 1 116 1.1E-78 T 26-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 Gene3D G3DSA:2.40.50.140 1 123 6.4E-67 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 Pfam PF00164 Ribosomal protein S12/S23 3 123 7.7E-44 T 26-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 SUPERFAMILY SSF50249 2 124 8.57E-53 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS01585 bb8db840b1f595b98d8a5567c86f4c2c 125 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 26-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS15285 b354c46cbd1a92dbf6238f8c9c16030b 578 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 393 574 2.7E-18 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15285 b354c46cbd1a92dbf6238f8c9c16030b 578 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 254 5.1E-12 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15285 b354c46cbd1a92dbf6238f8c9c16030b 578 SUPERFAMILY SSF161098 375 562 3.01E-18 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15285 b354c46cbd1a92dbf6238f8c9c16030b 578 Gene3D G3DSA:1.10.3720.10 64 258 3.0E-15 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15285 b354c46cbd1a92dbf6238f8c9c16030b 578 Gene3D G3DSA:1.10.3720.10 376 564 9.8E-16 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15285 b354c46cbd1a92dbf6238f8c9c16030b 578 SUPERFAMILY SSF161098 64 258 2.22E-22 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS15285 b354c46cbd1a92dbf6238f8c9c16030b 578 PANTHER PTHR30151:SF10 369 575 3.8E-138 T 26-04-2016 RGE_RS15285 b354c46cbd1a92dbf6238f8c9c16030b 578 PANTHER PTHR30151:SF10 67 224 3.8E-138 T 26-04-2016 RGE_RS15285 b354c46cbd1a92dbf6238f8c9c16030b 578 PANTHER PTHR30151 369 575 3.8E-138 T 26-04-2016 RGE_RS15285 b354c46cbd1a92dbf6238f8c9c16030b 578 PANTHER PTHR30151 67 224 3.8E-138 T 26-04-2016 RGE_RS04115 a9eee17f20bcdf0851e505d9f30fb2ab 317 ProSitePatterns PS01054 Transaldolase signature 1. 30 38 - T 26-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RGE_RS04115 a9eee17f20bcdf0851e505d9f30fb2ab 317 ProSitePatterns PS00958 Transaldolase active site. 122 139 - T 26-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RGE_RS04115 a9eee17f20bcdf0851e505d9f30fb2ab 317 Hamap MF_00492 Transaldolase [tal]. 1 316 48.36 T 26-04-2016 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RGE_RS04115 a9eee17f20bcdf0851e505d9f30fb2ab 317 Pfam PF00923 Transaldolase 13 310 1.0E-91 T 26-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RGE_RS04115 a9eee17f20bcdf0851e505d9f30fb2ab 317 PANTHER PTHR10683:SF18 1 314 1.2E-176 T 26-04-2016 RGE_RS04115 a9eee17f20bcdf0851e505d9f30fb2ab 317 SUPERFAMILY SSF51569 1 314 9.63E-106 T 26-04-2016 RGE_RS04115 a9eee17f20bcdf0851e505d9f30fb2ab 317 TIGRFAM TIGR00874 talAB: transaldolase 2 314 4.7E-133 T 26-04-2016 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RGE_RS04115 a9eee17f20bcdf0851e505d9f30fb2ab 317 Gene3D G3DSA:3.20.20.70 1 314 6.0E-119 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS04115 a9eee17f20bcdf0851e505d9f30fb2ab 317 PANTHER PTHR10683 1 314 1.2E-176 T 26-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RGE_RS15695 d3ce84d4ecdeb55abd2170cdb79e0330 414 PANTHER PTHR30158:SF3 3 407 1.0E-154 T 26-04-2016 RGE_RS15695 d3ce84d4ecdeb55abd2170cdb79e0330 414 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 49 383 7.6E-84 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS15695 d3ce84d4ecdeb55abd2170cdb79e0330 414 PANTHER PTHR30158 3 407 1.0E-154 T 26-04-2016 RGE_RS15695 d3ce84d4ecdeb55abd2170cdb79e0330 414 Gene3D G3DSA:2.40.50.100 74 107 1.7E-22 T 26-04-2016 RGE_RS15695 d3ce84d4ecdeb55abd2170cdb79e0330 414 Gene3D G3DSA:2.40.50.100 182 217 1.7E-22 T 26-04-2016 RGE_RS15695 d3ce84d4ecdeb55abd2170cdb79e0330 414 SUPERFAMILY SSF111369 62 308 2.88E-80 T 26-04-2016 RGE_RS15695 d3ce84d4ecdeb55abd2170cdb79e0330 414 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 70 302 3.5E-13 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS15755 440aff69df603a618a2740a0ab0b583e 153 Pfam PF13404 AsnC-type helix-turn-helix domain 5 46 1.0E-16 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS15755 440aff69df603a618a2740a0ab0b583e 153 PANTHER PTHR30154 1 136 3.9E-34 T 26-04-2016 RGE_RS15755 440aff69df603a618a2740a0ab0b583e 153 SUPERFAMILY SSF46785 3 65 6.72E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS15755 440aff69df603a618a2740a0ab0b583e 153 Pfam PF01037 Lrp/AsnC ligand binding domain 71 136 1.5E-8 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS15755 440aff69df603a618a2740a0ab0b583e 153 SMART SM00344 5 109 2.8E-26 T 26-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RGE_RS15755 440aff69df603a618a2740a0ab0b583e 153 Gene3D G3DSA:1.10.10.10 2 56 1.1E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS15755 440aff69df603a618a2740a0ab0b583e 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 5.7E-13 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS15755 440aff69df603a618a2740a0ab0b583e 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 5.7E-13 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS15755 440aff69df603a618a2740a0ab0b583e 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 5.7E-13 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS15755 440aff69df603a618a2740a0ab0b583e 153 SUPERFAMILY SSF54909 69 138 1.02E-10 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS15755 440aff69df603a618a2740a0ab0b583e 153 Gene3D G3DSA:3.30.70.920 58 131 5.9E-9 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS15755 440aff69df603a618a2740a0ab0b583e 153 PANTHER PTHR30154:SF2 1 136 3.9E-34 T 26-04-2016 RGE_RS06770 3a4a56cbffa9663fb4603404c71cf907 361 SUPERFAMILY SSF53756 54 356 5.65E-12 T 26-04-2016 RGE_RS06770 3a4a56cbffa9663fb4603404c71cf907 361 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 137 355 1.8E-7 T 26-04-2016 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 RGE_RS16855 7d870784c4156ae0651afe54dfa2096b 311 PANTHER PTHR10625 1 310 5.3E-99 T 26-04-2016 IPR000286 Histone deacetylase superfamily RGE_RS16855 7d870784c4156ae0651afe54dfa2096b 311 SUPERFAMILY SSF52768 1 310 1.06E-102 T 26-04-2016 RGE_RS16855 7d870784c4156ae0651afe54dfa2096b 311 Pfam PF00850 Histone deacetylase domain 20 308 5.0E-81 T 26-04-2016 IPR023801 Histone deacetylase domain RGE_RS16855 7d870784c4156ae0651afe54dfa2096b 311 PANTHER PTHR10625:SF104 1 310 5.3E-99 T 26-04-2016 RGE_RS16855 7d870784c4156ae0651afe54dfa2096b 311 PRINTS PR01270 Histone deacetylase superfamily signature 238 248 3.5E-17 T 26-04-2016 IPR000286 Histone deacetylase superfamily RGE_RS16855 7d870784c4156ae0651afe54dfa2096b 311 PRINTS PR01270 Histone deacetylase superfamily signature 160 175 3.5E-17 T 26-04-2016 IPR000286 Histone deacetylase superfamily RGE_RS16855 7d870784c4156ae0651afe54dfa2096b 311 PRINTS PR01270 Histone deacetylase superfamily signature 126 149 3.5E-17 T 26-04-2016 IPR000286 Histone deacetylase superfamily RGE_RS16855 7d870784c4156ae0651afe54dfa2096b 311 Gene3D G3DSA:3.40.800.20 3 309 3.4E-105 T 26-04-2016 IPR023801 Histone deacetylase domain RGE_RS07475 9ce9c41fb50a9d148e8def37055be48a 459 SUPERFAMILY SSF111283 14 458 4.45E-117 T 26-04-2016 RGE_RS07475 9ce9c41fb50a9d148e8def37055be48a 459 PANTHER PTHR30624:SF1 9 459 3.2E-136 T 26-04-2016 RGE_RS07475 9ce9c41fb50a9d148e8def37055be48a 459 PANTHER PTHR30624 9 459 3.2E-136 T 26-04-2016 RGE_RS07475 9ce9c41fb50a9d148e8def37055be48a 459 Pfam PF01523 Putative modulator of DNA gyrase 37 332 2.0E-51 T 26-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS01895 2a6df2930227ac3d862c8114a1ff134f 580 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 519 1.6E-59 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS01895 2a6df2930227ac3d862c8114a1ff134f 580 PANTHER PTHR32089:SF63 110 523 5.0E-137 T 26-04-2016 RGE_RS01895 2a6df2930227ac3d862c8114a1ff134f 580 Gene3D G3DSA:1.10.287.950 288 492 1.4E-58 T 26-04-2016 RGE_RS01895 2a6df2930227ac3d862c8114a1ff134f 580 PANTHER PTHR32089 110 523 5.0E-137 T 26-04-2016 RGE_RS01895 2a6df2930227ac3d862c8114a1ff134f 580 SMART SM00283 273 520 2.4E-94 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS01895 2a6df2930227ac3d862c8114a1ff134f 580 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 294 323 2.5E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS01895 2a6df2930227ac3d862c8114a1ff134f 580 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 448 477 2.5E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS01895 2a6df2930227ac3d862c8114a1ff134f 580 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 371 398 2.5E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS01895 2a6df2930227ac3d862c8114a1ff134f 580 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 6 31 2.5E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS01895 2a6df2930227ac3d862c8114a1ff134f 580 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 400 429 2.5E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS01895 2a6df2930227ac3d862c8114a1ff134f 580 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 185 5.0E-12 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS01895 2a6df2930227ac3d862c8114a1ff134f 580 SUPERFAMILY SSF58104 254 522 1.28E-67 T 26-04-2016 RGE_RS08295 d2a12ca49d22535b23cd95091beaaa27 252 Pfam PF07238 PilZ domain 129 240 2.5E-8 T 26-04-2016 IPR009875 PilZ domain GO:0035438 RGE_RS08295 d2a12ca49d22535b23cd95091beaaa27 252 Pfam PF07317 Flagellar regulator YcgR 22 127 1.3E-20 T 26-04-2016 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal RGE_RS08295 d2a12ca49d22535b23cd95091beaaa27 252 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 17 251 23.371 T 26-04-2016 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 RGE_RS08295 d2a12ca49d22535b23cd95091beaaa27 252 Gene3D G3DSA:2.40.10.220 130 247 2.1E-14 T 26-04-2016 RGE_RS07370 198b34fb75cd8a0f0ef6f825548ffcc1 102 Pfam PF07045 Domain of unknown function (DUF1330) 4 98 1.5E-30 T 26-04-2016 IPR010753 Domain of unknown function DUF1330 RGE_RS07370 198b34fb75cd8a0f0ef6f825548ffcc1 102 Gene3D G3DSA:3.30.70.900 3 99 8.2E-33 T 26-04-2016 RGE_RS07370 198b34fb75cd8a0f0ef6f825548ffcc1 102 PANTHER PTHR41521 1 101 1.9E-15 T 26-04-2016 RGE_RS07370 198b34fb75cd8a0f0ef6f825548ffcc1 102 SUPERFAMILY SSF54909 4 98 2.68E-25 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS03760 8aeda653530b01f8d4ebbe49d78d1fa5 323 PIRSF PIRSF017082 1 323 3.4E-77 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS03760 8aeda653530b01f8d4ebbe49d78d1fa5 323 SUPERFAMILY SSF53850 108 280 9.31E-12 T 26-04-2016 RGE_RS03760 8aeda653530b01f8d4ebbe49d78d1fa5 323 PANTHER PTHR30349:SF1 4 294 1.0E-76 T 26-04-2016 RGE_RS03760 8aeda653530b01f8d4ebbe49d78d1fa5 323 PANTHER PTHR30349 4 294 1.0E-76 T 26-04-2016 RGE_RS03760 8aeda653530b01f8d4ebbe49d78d1fa5 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 41 319 1.3E-74 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 SUPERFAMILY SSF47384 219 302 7.85E-20 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 PANTHER PTHR24423 215 652 1.7E-148 T 26-04-2016 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 PANTHER PTHR24423 3 18 1.7E-148 T 26-04-2016 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 SUPERFAMILY SSF55874 290 462 5.5E-45 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 Gene3D G3DSA:1.20.120.160 648 739 2.6E-14 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 Gene3D G3DSA:1.10.287.130 229 296 8.8E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 Gene3D G3DSA:3.30.565.10 302 464 1.4E-46 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 SMART SM00388 236 301 4.0E-21 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 Pfam PF00512 His Kinase A (phospho-acceptor) domain 236 301 1.1E-17 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 462 7.6E-26 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 SUPERFAMILY SSF52172 482 607 3.13E-37 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 Gene3D G3DSA:3.40.50.2300 479 608 1.5E-39 T 26-04-2016 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 SMART SM00387 348 463 2.2E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 SUPERFAMILY SSF47226 638 732 4.84E-13 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 SUPERFAMILY SSF47226 585 598 4.84E-13 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 3.1E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 402 3.1E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 416 3.1E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 460 3.1E-15 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 SMART SM00448 484 602 7.5E-36 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 Pfam PF00072 Response regulator receiver domain 486 602 8.8E-25 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 PANTHER PTHR24423:SF382 215 652 1.7E-148 T 26-04-2016 RGE_RS06940 ee46da8057766fe5600bf40c5307a283 753 PANTHER PTHR24423:SF382 3 18 1.7E-148 T 26-04-2016 RGE_RS09430 a8cd8bad5e8c12c683002df24a7e4565 372 SUPERFAMILY SSF55874 250 364 4.33E-10 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09430 a8cd8bad5e8c12c683002df24a7e4565 372 PANTHER PTHR24421 85 370 2.9E-50 T 26-04-2016 RGE_RS09430 a8cd8bad5e8c12c683002df24a7e4565 372 Gene3D G3DSA:3.30.565.10 215 234 2.4E-4 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09430 a8cd8bad5e8c12c683002df24a7e4565 372 Gene3D G3DSA:3.30.565.10 272 367 2.4E-4 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09430 a8cd8bad5e8c12c683002df24a7e4565 372 PANTHER PTHR24421:SF22 85 370 2.9E-50 T 26-04-2016 RGE_RS09430 a8cd8bad5e8c12c683002df24a7e4565 372 Pfam PF07730 Histidine kinase 177 243 4.8E-18 T 26-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RGE_RS09770 0cfb2f1c840bbea55e6e9b8d321c8768 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 324 3.8E-100 T 26-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RGE_RS09770 0cfb2f1c840bbea55e6e9b8d321c8768 335 PIRSF PIRSF000267 1 335 9.7E-91 T 26-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RGE_RS09770 0cfb2f1c840bbea55e6e9b8d321c8768 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 6 213 3.4E-45 T 26-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RGE_RS09770 0cfb2f1c840bbea55e6e9b8d321c8768 335 PANTHER PTHR30365 1 335 4.5E-159 T 26-04-2016 RGE_RS09770 0cfb2f1c840bbea55e6e9b8d321c8768 335 PANTHER PTHR30365:SF4 1 335 4.5E-159 T 26-04-2016 RGE_RS06320 5ad565bd135c631f78d5c5b04e36d1a9 206 PANTHER PTHR10108 10 185 9.0E-20 T 26-04-2016 RGE_RS06320 5ad565bd135c631f78d5c5b04e36d1a9 206 Gene3D G3DSA:3.40.50.150 10 184 1.4E-33 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS06320 5ad565bd135c631f78d5c5b04e36d1a9 206 PANTHER PTHR10108:SF705 10 185 9.0E-20 T 26-04-2016 RGE_RS06320 5ad565bd135c631f78d5c5b04e36d1a9 206 Pfam PF13489 Methyltransferase domain 33 148 1.8E-15 T 26-04-2016 RGE_RS06320 5ad565bd135c631f78d5c5b04e36d1a9 206 SUPERFAMILY SSF53335 10 191 4.94E-34 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS07865 53cbdac0afb06e63b7e51eb0af094a8b 663 SUPERFAMILY SSF53474 405 660 1.17E-55 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07865 53cbdac0afb06e63b7e51eb0af094a8b 663 Gene3D G3DSA:3.40.50.1820 325 652 1.4E-75 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07865 53cbdac0afb06e63b7e51eb0af094a8b 663 Pfam PF00326 Prolyl oligopeptidase family 456 661 1.6E-34 T 26-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RGE_RS07865 53cbdac0afb06e63b7e51eb0af094a8b 663 Gene3D G3DSA:2.120.10.60 57 281 1.0E-20 T 26-04-2016 RGE_RS07865 53cbdac0afb06e63b7e51eb0af094a8b 663 SUPERFAMILY SSF82171 63 386 1.7E-32 T 26-04-2016 RGE_RS07865 53cbdac0afb06e63b7e51eb0af094a8b 663 PANTHER PTHR11731:SF140 213 663 4.2E-75 T 26-04-2016 RGE_RS07865 53cbdac0afb06e63b7e51eb0af094a8b 663 PANTHER PTHR11731 213 663 4.2E-75 T 26-04-2016 RGE_RS07510 39970dba00ec0cceee32a6e932ed857c 321 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 65 6.4E-11 T 26-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RGE_RS07510 39970dba00ec0cceee32a6e932ed857c 321 Gene3D G3DSA:3.40.1030.10 77 291 1.6E-26 T 26-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RGE_RS07510 39970dba00ec0cceee32a6e932ed857c 321 SUPERFAMILY SSF52418 76 298 1.13E-34 T 26-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RGE_RS07510 39970dba00ec0cceee32a6e932ed857c 321 Gene3D G3DSA:1.20.970.10 7 68 1.2E-17 T 26-04-2016 RGE_RS07510 39970dba00ec0cceee32a6e932ed857c 321 SUPERFAMILY SSF47648 7 72 7.46E-15 T 26-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RGE_RS20565 5bc202523bec4e0ec0245d456a6ebfca 290 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 211 277 8.6E-10 T 26-04-2016 IPR006260 TonB, C-terminal GO:0006810 RGE_RS20565 5bc202523bec4e0ec0245d456a6ebfca 290 SUPERFAMILY SSF74653 166 280 6.41E-18 T 26-04-2016 RGE_RS20565 5bc202523bec4e0ec0245d456a6ebfca 290 Gene3D G3DSA:3.30.1150.10 176 281 1.8E-16 T 26-04-2016 RGE_RS20565 5bc202523bec4e0ec0245d456a6ebfca 290 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 207 276 9.2E-11 T 26-04-2016 IPR006260 TonB, C-terminal GO:0006810 RGE_RS14830 419b43787f3476f74cb43b2e95439e31 807 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 159 807 2.1E-104 T 26-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 RGE_RS14830 419b43787f3476f74cb43b2e95439e31 807 PANTHER PTHR32552:SF17 82 807 3.2E-141 T 26-04-2016 RGE_RS14830 419b43787f3476f74cb43b2e95439e31 807 Pfam PF07660 Secretin and TonB N terminus short domain 64 103 7.4E-7 T 26-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RGE_RS14830 419b43787f3476f74cb43b2e95439e31 807 SUPERFAMILY SSF56935 149 807 1.28E-121 T 26-04-2016 RGE_RS14830 419b43787f3476f74cb43b2e95439e31 807 Pfam PF00593 TonB dependent receptor 579 806 4.3E-27 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14830 419b43787f3476f74cb43b2e95439e31 807 Gene3D G3DSA:2.170.130.10 136 268 1.8E-36 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14830 419b43787f3476f74cb43b2e95439e31 807 Pfam PF07715 TonB-dependent Receptor Plug Domain 158 260 2.2E-20 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14830 419b43787f3476f74cb43b2e95439e31 807 SMART SM00965 62 113 7.9E-12 T 26-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RGE_RS14830 419b43787f3476f74cb43b2e95439e31 807 PANTHER PTHR32552 82 807 3.2E-141 T 26-04-2016 RGE_RS14830 419b43787f3476f74cb43b2e95439e31 807 Gene3D G3DSA:2.40.170.20 276 807 1.2E-131 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS02035 9bbf69e30600599f71f9597dda428961 345 Pfam PF13480 Acetyltransferase (GNAT) domain 170 278 2.0E-16 T 26-04-2016 RGE_RS02035 9bbf69e30600599f71f9597dda428961 345 TIGRFAM TIGR03019 pepcterm_femAB: FemAB-related protein, PEP-CTERM system-associated 16 345 1.2E-154 T 26-04-2016 IPR017469 PEP-CTERM system-associated, FemAB-related RGE_RS02035 9bbf69e30600599f71f9597dda428961 345 Gene3D G3DSA:3.40.630.30 108 295 2.4E-36 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS02035 9bbf69e30600599f71f9597dda428961 345 SUPERFAMILY SSF55729 152 312 5.14E-33 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS02035 9bbf69e30600599f71f9597dda428961 345 SUPERFAMILY SSF55729 16 111 1.23E-7 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS21680 8ac8ec1ca9ef27fdb7abfe766a212fa0 509 PANTHER PTHR21343:SF1 11 508 8.2E-175 T 26-04-2016 RGE_RS21680 8ac8ec1ca9ef27fdb7abfe766a212fa0 509 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 509 180.34 T 26-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 RGE_RS21680 8ac8ec1ca9ef27fdb7abfe766a212fa0 509 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 273 462 2.2E-52 T 26-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 RGE_RS21680 8ac8ec1ca9ef27fdb7abfe766a212fa0 509 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 13 503 2.7E-119 T 26-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 RGE_RS21680 8ac8ec1ca9ef27fdb7abfe766a212fa0 509 Gene3D G3DSA:3.40.50.880 272 470 6.4E-26 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS21680 8ac8ec1ca9ef27fdb7abfe766a212fa0 509 SUPERFAMILY SSF52540 12 258 4.18E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21680 8ac8ec1ca9ef27fdb7abfe766a212fa0 509 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 14 223 1.9E-18 T 26-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RGE_RS21680 8ac8ec1ca9ef27fdb7abfe766a212fa0 509 Gene3D G3DSA:3.40.50.300 11 251 6.0E-42 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21680 8ac8ec1ca9ef27fdb7abfe766a212fa0 509 SUPERFAMILY SSF52317 273 471 2.81E-32 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS21680 8ac8ec1ca9ef27fdb7abfe766a212fa0 509 PANTHER PTHR21343 11 508 8.2E-175 T 26-04-2016 RGE_RS03045 b92ef124d3092da09581a27aa2b749f5 188 Pfam PF04011 LemA family 7 174 4.9E-31 T 26-04-2016 IPR007156 LemA RGE_RS03045 b92ef124d3092da09581a27aa2b749f5 188 Gene3D G3DSA:1.20.1440.20 15 176 2.1E-31 T 26-04-2016 IPR023353 LemA-like domain RGE_RS03045 b92ef124d3092da09581a27aa2b749f5 188 SUPERFAMILY SSF140478 25 173 6.54E-27 T 26-04-2016 IPR023353 LemA-like domain RGE_RS03045 b92ef124d3092da09581a27aa2b749f5 188 PANTHER PTHR34478 1 161 1.8E-25 T 26-04-2016 RGE_RS12710 c8889c0e63a8d1c240ebeeef8f8c5aba 303 Pfam PF07859 alpha/beta hydrolase fold 73 277 3.8E-67 T 26-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 RGE_RS12710 c8889c0e63a8d1c240ebeeef8f8c5aba 303 PANTHER PTHR23024:SF24 43 299 2.6E-70 T 26-04-2016 RGE_RS12710 c8889c0e63a8d1c240ebeeef8f8c5aba 303 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 73 89 - T 26-04-2016 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 RGE_RS12710 c8889c0e63a8d1c240ebeeef8f8c5aba 303 PANTHER PTHR23024 43 299 2.6E-70 T 26-04-2016 RGE_RS12710 c8889c0e63a8d1c240ebeeef8f8c5aba 303 Gene3D G3DSA:3.40.50.1820 7 301 4.5E-83 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12710 c8889c0e63a8d1c240ebeeef8f8c5aba 303 SUPERFAMILY SSF53474 17 301 1.83E-65 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 161 185 - T 26-04-2016 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 Gene3D G3DSA:3.40.1500.10 1 297 3.5E-123 T 26-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 PRINTS PR00073 Coprogen oxidase signature 257 283 1.9E-66 T 26-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 PRINTS PR00073 Coprogen oxidase signature 229 256 1.9E-66 T 26-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 PRINTS PR00073 Coprogen oxidase signature 157 186 1.9E-66 T 26-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 PRINTS PR00073 Coprogen oxidase signature 85 109 1.9E-66 T 26-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 PRINTS PR00073 Coprogen oxidase signature 22 38 1.9E-66 T 26-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 PRINTS PR00073 Coprogen oxidase signature 120 142 1.9E-66 T 26-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 Pfam PF01218 Coproporphyrinogen III oxidase 1 297 1.1E-120 T 26-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 SUPERFAMILY SSF102886 2 297 2.35E-128 T 26-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 PANTHER PTHR10755 1 298 1.4E-159 T 26-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 PIRSF PIRSF000166 1 298 2.4E-115 T 26-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS18825 92ff705c73f3e8cef4b121c40af79971 299 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 1 272 51.235 T 26-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SUPERFAMILY SSF53850 2 219 8.31E-38 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SUPERFAMILY SSF55874 592 761 7.47E-45 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Pfam PF00072 Response regulator receiver domain 930 1040 1.2E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Gene3D G3DSA:3.40.190.10 179 219 1.1E-24 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Gene3D G3DSA:3.40.190.10 1 77 1.1E-24 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Pfam PF00512 His Kinase A (phospho-acceptor) domain 538 603 1.4E-18 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 PANTHER PTHR24423 1 50 2.2E-178 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Gene3D G3DSA:1.20.120.160 1061 1173 1.0E-18 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SMART SM00062 1 219 2.7E-11 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SUPERFAMILY SSF47384 525 604 8.83E-21 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SMART SM00387 650 766 1.8E-35 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 2 217 4.4E-30 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Gene3D G3DSA:3.30.450.20 387 523 1.0E-9 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Gene3D G3DSA:1.10.287.130 532 599 3.1E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Pfam PF01627 Hpt domain 1087 1170 9.3E-10 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Gene3D G3DSA:3.40.50.2300 925 1045 4.9E-42 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 PANTHER PTHR24423:SF486 385 769 2.2E-178 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 PANTHER PTHR24423:SF486 1 50 2.2E-178 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 PANTHER PTHR24423:SF486 859 1042 2.2E-178 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 PANTHER PTHR24423 385 769 2.2E-178 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 PANTHER PTHR24423 859 1042 2.2E-178 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SUPERFAMILY SSF52172 926 1045 2.85E-38 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SUPERFAMILY SSF52172 782 902 1.32E-8 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Pfam PF08448 PAS fold 286 390 1.8E-11 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Gene3D G3DSA:3.40.50.2300 782 902 7.9E-8 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 650 764 2.8E-25 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SMART SM00388 538 603 5.9E-25 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Gene3D G3DSA:3.40.190.10 78 166 5.6E-4 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Pfam PF13188 PAS domain 410 460 3.5E-4 T 26-04-2016 IPR000014 PAS domain RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Gene3D G3DSA:3.30.450.20 278 386 3.1E-12 T 26-04-2016 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SMART SM00448 928 1041 1.4E-36 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 Gene3D G3DSA:3.30.565.10 604 761 1.1E-43 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 PRINTS PR00344 Bacterial sensor protein C-terminal signature 691 705 1.5E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 PRINTS PR00344 Bacterial sensor protein C-terminal signature 750 763 1.5E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 PRINTS PR00344 Bacterial sensor protein C-terminal signature 709 719 1.5E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 PRINTS PR00344 Bacterial sensor protein C-terminal signature 726 744 1.5E-13 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SUPERFAMILY SSF47226 1024 1037 1.23E-19 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SUPERFAMILY SSF47226 1066 1151 1.23E-19 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SUPERFAMILY SSF55785 266 387 2.26E-11 T 26-04-2016 IPR000014 PAS domain RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SUPERFAMILY SSF55785 386 523 7.61E-9 T 26-04-2016 IPR000014 PAS domain RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SMART SM00091 280 347 1.5 T 26-04-2016 IPR000014 PAS domain RGE_RS04335 0e5f80d90ce9dc8535bb8d949be3d7ef 1182 SMART SM00091 410 478 12.0 T 26-04-2016 IPR000014 PAS domain RGE_RS06540 8a99f2fb226aa25ce41249eaef2984cc 402 PANTHER PTHR11986:SF79 18 391 1.9E-163 T 26-04-2016 RGE_RS06540 8a99f2fb226aa25ce41249eaef2984cc 402 Gene3D G3DSA:3.40.640.10 58 303 1.9E-84 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS06540 8a99f2fb226aa25ce41249eaef2984cc 402 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 11 396 45.148 T 26-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RGE_RS06540 8a99f2fb226aa25ce41249eaef2984cc 402 PANTHER PTHR11986 18 391 1.9E-163 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS06540 8a99f2fb226aa25ce41249eaef2984cc 402 Gene3D G3DSA:3.90.1150.10 13 57 4.4E-35 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS06540 8a99f2fb226aa25ce41249eaef2984cc 402 Gene3D G3DSA:3.90.1150.10 305 395 4.4E-35 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS06540 8a99f2fb226aa25ce41249eaef2984cc 402 SUPERFAMILY SSF53383 9 393 5.7E-126 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS06540 8a99f2fb226aa25ce41249eaef2984cc 402 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 14 391 3.4E-144 T 26-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RGE_RS06540 8a99f2fb226aa25ce41249eaef2984cc 402 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 221 258 - T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS06540 8a99f2fb226aa25ce41249eaef2984cc 402 Pfam PF00202 Aminotransferase class-III 20 391 2.2E-110 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS20420 4db6352b231715a6ba39619fbd75a4de 156 Gene3D G3DSA:3.40.1280.10 1 155 3.3E-62 T 26-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RGE_RS20420 4db6352b231715a6ba39619fbd75a4de 156 Pfam PF00588 SpoU rRNA Methylase family 3 143 2.6E-31 T 26-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RGE_RS20420 4db6352b231715a6ba39619fbd75a4de 156 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 155 3.1E-57 T 26-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RGE_RS20420 4db6352b231715a6ba39619fbd75a4de 156 PIRSF PIRSF029256 1 156 8.1E-62 T 26-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RGE_RS20420 4db6352b231715a6ba39619fbd75a4de 156 PANTHER PTHR12029 1 155 5.6E-68 T 26-04-2016 RGE_RS20420 4db6352b231715a6ba39619fbd75a4de 156 SUPERFAMILY SSF75217 2 154 1.11E-41 T 26-04-2016 IPR029028 Alpha/beta knot methyltransferases RGE_RS20420 4db6352b231715a6ba39619fbd75a4de 156 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 153 31.552 T 26-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RGE_RS20420 4db6352b231715a6ba39619fbd75a4de 156 PANTHER PTHR12029:SF31 1 155 5.6E-68 T 26-04-2016 RGE_RS12705 8c1bbc7ff3342c0d8bb1238bc274aead 286 Pfam PF03061 Thioesterase superfamily 23 107 4.7E-12 T 26-04-2016 IPR006683 Thioesterase domain RGE_RS12705 8c1bbc7ff3342c0d8bb1238bc274aead 286 PANTHER PTHR13355:SF8 24 286 2.4E-32 T 26-04-2016 RGE_RS12705 8c1bbc7ff3342c0d8bb1238bc274aead 286 SUPERFAMILY SSF55729 145 286 2.48E-34 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS12705 8c1bbc7ff3342c0d8bb1238bc274aead 286 SUPERFAMILY SSF54637 3 138 8.22E-38 T 26-04-2016 IPR029069 HotDog domain RGE_RS12705 8c1bbc7ff3342c0d8bb1238bc274aead 286 PANTHER PTHR13355 24 286 2.4E-32 T 26-04-2016 RGE_RS12705 8c1bbc7ff3342c0d8bb1238bc274aead 286 Pfam PF13673 Acetyltransferase (GNAT) domain 164 285 5.1E-17 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS12705 8c1bbc7ff3342c0d8bb1238bc274aead 286 Gene3D G3DSA:3.10.129.10 3 138 8.5E-40 T 26-04-2016 IPR029069 HotDog domain RGE_RS12705 8c1bbc7ff3342c0d8bb1238bc274aead 286 Gene3D G3DSA:3.40.630.30 157 284 4.0E-34 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS12705 8c1bbc7ff3342c0d8bb1238bc274aead 286 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 11 119 1.4E-21 T 26-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RGE_RS19785 e77627ebcd59ce3eca16e3e08a46e76a 27 Pfam PF08042 PqqA family 5 23 1.8E-5 T 26-04-2016 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 UniPathway: UPA00539 RGE_RS19785 e77627ebcd59ce3eca16e3e08a46e76a 27 TIGRFAM TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA 6 26 1.1E-7 T 26-04-2016 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 UniPathway: UPA00539 RGE_RS12795 6d33d7b248d8e9cf5117004d0af545f3 466 SUPERFAMILY SSF56935 92 371 1.01E-9 T 26-04-2016 RGE_RS12795 6d33d7b248d8e9cf5117004d0af545f3 466 SUPERFAMILY SSF56935 410 466 1.01E-9 T 26-04-2016 RGE_RS12795 6d33d7b248d8e9cf5117004d0af545f3 466 Pfam PF11336 Protein of unknown function (DUF3138) 15 466 1.0E-52 T 26-04-2016 IPR021485 Protein of unknown function DUF3138 RGE_RS23110 863e1ce50c0cf073d050c60174881ae6 905 Pfam PF02709 N-terminal domain of galactosyltransferase 680 730 2.0E-5 T 26-04-2016 IPR027791 Galactosyltransferase, C-terminal UniPathway: UPA00378 RGE_RS23110 863e1ce50c0cf073d050c60174881ae6 905 Pfam PF00535 Glycosyl transferase family 2 526 653 3.2E-26 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS23110 863e1ce50c0cf073d050c60174881ae6 905 Gene3D G3DSA:3.90.550.10 523 740 4.6E-45 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS23110 863e1ce50c0cf073d050c60174881ae6 905 PANTHER PTHR22916 470 734 1.7E-48 T 26-04-2016 RGE_RS23110 863e1ce50c0cf073d050c60174881ae6 905 SUPERFAMILY SSF53448 511 754 8.63E-52 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS06300 6dc6ae73e0fc6f27841f91376face91d 198 Gene3D G3DSA:3.40.630.30 12 176 1.9E-24 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06300 6dc6ae73e0fc6f27841f91376face91d 198 SUPERFAMILY SSF55729 4 175 6.86E-26 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06300 6dc6ae73e0fc6f27841f91376face91d 198 Pfam PF00583 Acetyltransferase (GNAT) family 76 152 3.2E-8 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS15950 456a1ed0bd742afab4f9d8834633677f 556 PANTHER PTHR21666:SF206 103 501 1.8E-91 T 26-04-2016 RGE_RS15950 456a1ed0bd742afab4f9d8834633677f 556 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 170 198 - T 26-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RGE_RS15950 456a1ed0bd742afab4f9d8834633677f 556 SUPERFAMILY SSF54106 458 501 6.67E-6 T 26-04-2016 IPR018392 LysM domain RGE_RS15950 456a1ed0bd742afab4f9d8834633677f 556 Gene3D G3DSA:1.10.530.10 147 305 4.2E-44 T 26-04-2016 RGE_RS15950 456a1ed0bd742afab4f9d8834633677f 556 PANTHER PTHR21666 103 501 1.8E-91 T 26-04-2016 RGE_RS15950 456a1ed0bd742afab4f9d8834633677f 556 Gene3D G3DSA:3.10.350.10 462 500 7.9E-9 T 26-04-2016 IPR018392 LysM domain RGE_RS15950 456a1ed0bd742afab4f9d8834633677f 556 Pfam PF01476 LysM domain 462 500 8.1E-4 T 26-04-2016 IPR018392 LysM domain RGE_RS15950 456a1ed0bd742afab4f9d8834633677f 556 SUPERFAMILY SSF53955 149 306 1.41E-40 T 26-04-2016 IPR023346 Lysozyme-like domain RGE_RS15950 456a1ed0bd742afab4f9d8834633677f 556 Pfam PF01464 Transglycosylase SLT domain 160 259 2.9E-25 T 26-04-2016 IPR008258 Transglycosylase SLT domain 1 RGE_RS21160 0c64b0d57b7dbb712e143a8f475b5ed7 305 PANTHER PTHR10277:SF40 3 295 2.5E-154 T 26-04-2016 RGE_RS21160 0c64b0d57b7dbb712e143a8f475b5ed7 305 SUPERFAMILY SSF51569 3 295 3.48E-73 T 26-04-2016 RGE_RS21160 0c64b0d57b7dbb712e143a8f475b5ed7 305 PANTHER PTHR10277 3 295 2.5E-154 T 26-04-2016 RGE_RS21160 0c64b0d57b7dbb712e143a8f475b5ed7 305 Gene3D G3DSA:3.20.20.70 4 290 6.2E-88 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS21160 0c64b0d57b7dbb712e143a8f475b5ed7 305 Pfam PF00682 HMGL-like 6 279 2.4E-53 T 26-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RGE_RS10790 16841c586d0b6da5211492e3b30f7623 402 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 11 92 1.3E-9 T 26-04-2016 IPR017560 Cytochrome c-type biogenesis protein CcmI RGE_RS10790 16841c586d0b6da5211492e3b30f7623 402 SUPERFAMILY SSF48452 126 236 2.73E-16 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS10790 16841c586d0b6da5211492e3b30f7623 402 Gene3D G3DSA:1.25.40.10 175 259 1.4E-18 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS10790 16841c586d0b6da5211492e3b30f7623 402 SMART SM00028 209 242 99.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS10790 16841c586d0b6da5211492e3b30f7623 402 SMART SM00028 138 171 0.023 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS10790 16841c586d0b6da5211492e3b30f7623 402 Gene3D G3DSA:1.25.40.10 118 174 4.2E-10 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS10790 16841c586d0b6da5211492e3b30f7623 402 Pfam PF13428 Tetratricopeptide repeat 139 180 1.6E-5 T 26-04-2016 RGE_RS03810 9f2e3a75f63fce3e896b9dd242f508ef 243 Gene3D G3DSA:1.10.10.10 166 232 3.0E-15 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS03810 9f2e3a75f63fce3e896b9dd242f508ef 243 SUPERFAMILY SSF51206 25 155 3.67E-23 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS03810 9f2e3a75f63fce3e896b9dd242f508ef 243 Pfam PF13545 Crp-like helix-turn-helix domain 168 237 7.3E-13 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS03810 9f2e3a75f63fce3e896b9dd242f508ef 243 Gene3D G3DSA:2.60.120.10 26 154 1.8E-21 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS03810 9f2e3a75f63fce3e896b9dd242f508ef 243 Pfam PF00027 Cyclic nucleotide-binding domain 49 134 2.4E-11 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS03810 9f2e3a75f63fce3e896b9dd242f508ef 243 SUPERFAMILY SSF46785 166 240 8.54E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS03810 9f2e3a75f63fce3e896b9dd242f508ef 243 PANTHER PTHR24567:SF30 5 237 3.8E-28 T 26-04-2016 RGE_RS03810 9f2e3a75f63fce3e896b9dd242f508ef 243 PANTHER PTHR24567 5 237 3.8E-28 T 26-04-2016 RGE_RS03810 9f2e3a75f63fce3e896b9dd242f508ef 243 SMART SM00419 185 232 1.4E-5 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS03810 9f2e3a75f63fce3e896b9dd242f508ef 243 SMART SM00100 30 151 0.0069 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS01160 901d79f823819f3e79cfc64ff9dc310d 151 Pfam PF01322 Cytochrome C' 29 149 8.3E-39 T 26-04-2016 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 RGE_RS01160 901d79f823819f3e79cfc64ff9dc310d 151 PIRSF PIRSF000027 4 151 1.8E-47 T 26-04-2016 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 RGE_RS01160 901d79f823819f3e79cfc64ff9dc310d 151 Gene3D G3DSA:1.20.120.10 23 151 1.3E-44 T 26-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RGE_RS01160 901d79f823819f3e79cfc64ff9dc310d 151 PRINTS PR00608 Class II cytochrome C signature 115 138 1.8E-8 T 26-04-2016 IPR015984 Cytochrome c prime, subgroup RGE_RS01160 901d79f823819f3e79cfc64ff9dc310d 151 PRINTS PR00608 Class II cytochrome C signature 138 149 1.8E-8 T 26-04-2016 IPR015984 Cytochrome c prime, subgroup RGE_RS01160 901d79f823819f3e79cfc64ff9dc310d 151 SUPERFAMILY SSF47175 24 149 1.3E-41 T 26-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RGE_RS08555 fe28e503e6fe0224735a08c8a403184c 203 Gene3D G3DSA:1.10.10.10 155 198 1.0E-5 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS08555 fe28e503e6fe0224735a08c8a403184c 203 PANTHER PTHR26402 5 123 1.7E-31 T 26-04-2016 RGE_RS08555 fe28e503e6fe0224735a08c8a403184c 203 Pfam PF00072 Response regulator receiver domain 7 114 5.3E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08555 fe28e503e6fe0224735a08c8a403184c 203 SMART SM00448 5 115 7.7E-29 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08555 fe28e503e6fe0224735a08c8a403184c 203 SUPERFAMILY SSF52172 4 123 1.85E-34 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS08555 fe28e503e6fe0224735a08c8a403184c 203 Pfam PF03861 ANTAR domain 155 193 1.4E-4 T 26-04-2016 IPR005561 ANTAR domain GO:0003723 RGE_RS08555 fe28e503e6fe0224735a08c8a403184c 203 Gene3D G3DSA:3.40.50.2300 3 122 2.0E-31 T 26-04-2016 RGE_RS03300 81302ad8096b359f9f2a597d2aa6dae9 263 SUPERFAMILY SSF55920 8 257 2.36E-88 T 26-04-2016 IPR000994 Peptidase M24, structural domain RGE_RS03300 81302ad8096b359f9f2a597d2aa6dae9 263 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 170 188 - T 26-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RGE_RS03300 81302ad8096b359f9f2a597d2aa6dae9 263 Gene3D G3DSA:3.90.230.10 8 255 1.6E-88 T 26-04-2016 IPR000994 Peptidase M24, structural domain RGE_RS03300 81302ad8096b359f9f2a597d2aa6dae9 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 94 110 1.1E-22 T 26-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RGE_RS03300 81302ad8096b359f9f2a597d2aa6dae9 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 164 176 1.1E-22 T 26-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RGE_RS03300 81302ad8096b359f9f2a597d2aa6dae9 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 71 84 1.1E-22 T 26-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RGE_RS03300 81302ad8096b359f9f2a597d2aa6dae9 263 PRINTS PR00599 Methionine aminopeptidase-1 signature 195 207 1.1E-22 T 26-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RGE_RS03300 81302ad8096b359f9f2a597d2aa6dae9 263 PANTHER PTHR10804:SF75 5 251 2.7E-123 T 26-04-2016 RGE_RS03300 81302ad8096b359f9f2a597d2aa6dae9 263 Pfam PF00557 Metallopeptidase family M24 15 243 1.0E-49 T 26-04-2016 IPR000994 Peptidase M24, structural domain RGE_RS03300 81302ad8096b359f9f2a597d2aa6dae9 263 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 9 251 7.5E-92 T 26-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RGE_RS03300 81302ad8096b359f9f2a597d2aa6dae9 263 PANTHER PTHR10804 5 251 2.7E-123 T 26-04-2016 RGE_RS03300 81302ad8096b359f9f2a597d2aa6dae9 263 Hamap MF_01974 Methionine aminopeptidase [map]. 5 253 40.269 T 26-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RGE_RS02930 ef15887912f7f3da064375b83b098d8f 412 Pfam PF07690 Major Facilitator Superfamily 18 346 4.1E-22 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS02930 ef15887912f7f3da064375b83b098d8f 412 SUPERFAMILY SSF103473 9 395 9.68E-34 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS02930 ef15887912f7f3da064375b83b098d8f 412 Gene3D G3DSA:1.20.1250.20 9 198 6.0E-14 T 26-04-2016 RGE_RS02930 ef15887912f7f3da064375b83b098d8f 412 Gene3D G3DSA:1.20.1250.20 222 394 2.0E-7 T 26-04-2016 RGE_RS02930 ef15887912f7f3da064375b83b098d8f 412 PANTHER PTHR12778 12 349 1.7E-34 T 26-04-2016 RGE_RS02595 18025fc55654625b735223be7f9ef08f 309 Pfam PF00701 Dihydrodipicolinate synthetase family 6 301 7.2E-35 T 26-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RGE_RS02595 18025fc55654625b735223be7f9ef08f 309 PIRSF PIRSF001365 1 309 6.9E-63 T 26-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RGE_RS02595 18025fc55654625b735223be7f9ef08f 309 SMART SM01130 5 304 8.4E-67 T 26-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RGE_RS02595 18025fc55654625b735223be7f9ef08f 309 SUPERFAMILY SSF51569 2 304 6.8E-66 T 26-04-2016 RGE_RS02595 18025fc55654625b735223be7f9ef08f 309 PANTHER PTHR12128:SF15 1 305 3.1E-88 T 26-04-2016 RGE_RS02595 18025fc55654625b735223be7f9ef08f 309 PANTHER PTHR12128 1 305 3.1E-88 T 26-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RGE_RS02595 18025fc55654625b735223be7f9ef08f 309 Gene3D G3DSA:3.20.20.70 6 305 4.2E-79 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS14790 d788a0140e999cbec69f63b0099d22f7 855 PANTHER PTHR32305 64 519 5.4E-23 T 26-04-2016 RGE_RS14790 d788a0140e999cbec69f63b0099d22f7 855 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 64 588 1.9E-57 T 26-04-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RGE_RS14790 d788a0140e999cbec69f63b0099d22f7 855 PANTHER PTHR32305:SF7 64 519 5.4E-23 T 26-04-2016 RGE_RS14790 d788a0140e999cbec69f63b0099d22f7 855 SUPERFAMILY SSF69255 427 518 6.28E-14 T 26-04-2016 RGE_RS14790 d788a0140e999cbec69f63b0099d22f7 855 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 64 593 3.7E-49 T 26-04-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RGE_RS14790 d788a0140e999cbec69f63b0099d22f7 855 SUPERFAMILY SSF69279 238 402 4.76E-11 T 26-04-2016 RGE_RS14790 d788a0140e999cbec69f63b0099d22f7 855 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 693 838 1.4E-16 T 26-04-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal RGE_RS14790 d788a0140e999cbec69f63b0099d22f7 855 Gene3D G3DSA:3.55.50.10 125 230 1.8E-19 T 26-04-2016 RGE_RS14790 d788a0140e999cbec69f63b0099d22f7 855 SUPERFAMILY SSF69279 63 226 9.35E-32 T 26-04-2016 RGE_RS14790 d788a0140e999cbec69f63b0099d22f7 855 Gene3D G3DSA:2.40.50.230 430 518 5.5E-19 T 26-04-2016 IPR006531 Gp5 N-terminal RGE_RS14790 d788a0140e999cbec69f63b0099d22f7 855 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 571 669 1.4E-28 T 26-04-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain RGE_RS14790 d788a0140e999cbec69f63b0099d22f7 855 Pfam PF05954 Phage late control gene D protein (GPD) 64 369 5.5E-61 T 26-04-2016 RGE_RS03560 5e715111b4402fd6d798eb3e90210293 215 Gene3D G3DSA:2.60.120.10 84 177 1.0E-7 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS03560 5e715111b4402fd6d798eb3e90210293 215 SUPERFAMILY SSF51206 56 177 7.46E-11 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS02705 497752f5f0c2a2b661149f215325a7a1 153 PANTHER PTHR34986 2 153 7.1E-46 T 26-04-2016 RGE_RS02705 497752f5f0c2a2b661149f215325a7a1 153 Pfam PF04074 Domain of unknown function (DUF386) 1 151 3.3E-43 T 26-04-2016 IPR004375 YhcH/YjgK/YiaL family RGE_RS02705 497752f5f0c2a2b661149f215325a7a1 153 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 152 1.1E-37 T 26-04-2016 IPR004375 YhcH/YjgK/YiaL family RGE_RS02705 497752f5f0c2a2b661149f215325a7a1 153 SUPERFAMILY SSF51197 14 152 4.67E-38 T 26-04-2016 RGE_RS02705 497752f5f0c2a2b661149f215325a7a1 153 Gene3D G3DSA:2.60.120.370 1 152 1.2E-44 T 26-04-2016 IPR004375 YhcH/YjgK/YiaL family RGE_RS20775 70c9e38ebeecf9557f113f7bd436e057 405 Pfam PF02417 Chromate transporter 21 185 9.6E-26 T 26-04-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 RGE_RS20775 70c9e38ebeecf9557f113f7bd436e057 405 Pfam PF02417 Chromate transporter 235 398 6.9E-30 T 26-04-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 RGE_RS20775 70c9e38ebeecf9557f113f7bd436e057 405 PANTHER PTHR33567 12 403 3.2E-52 T 26-04-2016 RGE_RS20775 70c9e38ebeecf9557f113f7bd436e057 405 TIGRFAM TIGR00937 2A51: chromate efflux transporter 28 391 4.8E-55 T 26-04-2016 IPR014047 Chromate transporter, long chain RGE_RS20775 70c9e38ebeecf9557f113f7bd436e057 405 PIRSF PIRSF004810 3 405 6.6E-69 T 26-04-2016 IPR014047 Chromate transporter, long chain RGE_RS16270 85c3a7b61d88b8d30cb5f0db0ad47356 440 Pfam PF03209 PUCC protein 33 420 4.5E-99 T 26-04-2016 IPR004896 PucC-related RGE_RS16270 85c3a7b61d88b8d30cb5f0db0ad47356 440 SUPERFAMILY SSF103473 10 419 3.92E-27 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS16270 85c3a7b61d88b8d30cb5f0db0ad47356 440 PANTHER PTHR23538 1 438 9.0E-52 T 26-04-2016 RGE_RS16270 85c3a7b61d88b8d30cb5f0db0ad47356 440 PIRSF PIRSF016565 1 433 3.6E-131 T 26-04-2016 IPR026036 PucC protein RGE_RS16270 85c3a7b61d88b8d30cb5f0db0ad47356 440 Gene3D G3DSA:1.20.1250.20 235 416 4.0E-8 T 26-04-2016 RGE_RS16270 85c3a7b61d88b8d30cb5f0db0ad47356 440 Gene3D G3DSA:1.20.1250.20 14 194 2.1E-6 T 26-04-2016 RGE_RS07005 b4b3bbb5cd8f08b0b1b23ea1430c5c4b 359 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 74 317 1.7E-34 T 26-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 RGE_RS07005 b4b3bbb5cd8f08b0b1b23ea1430c5c4b 359 PANTHER PTHR32120 36 358 6.0E-88 T 26-04-2016 RGE_RS07005 b4b3bbb5cd8f08b0b1b23ea1430c5c4b 359 SUPERFAMILY SSF52540 116 313 6.95E-40 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07005 b4b3bbb5cd8f08b0b1b23ea1430c5c4b 359 Gene3D G3DSA:3.40.50.300 117 269 2.0E-32 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07005 b4b3bbb5cd8f08b0b1b23ea1430c5c4b 359 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 33 330 26.521 T 26-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 RGE_RS07005 b4b3bbb5cd8f08b0b1b23ea1430c5c4b 359 PANTHER PTHR32120:SF8 36 358 6.0E-88 T 26-04-2016 RGE_RS07005 b4b3bbb5cd8f08b0b1b23ea1430c5c4b 359 Pfam PF03193 Protein of unknown function, DUF258 106 271 1.6E-39 T 26-04-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 RGE_RS07005 b4b3bbb5cd8f08b0b1b23ea1430c5c4b 359 Gene3D G3DSA:1.10.40.50 274 330 4.6E-16 T 26-04-2016 RGE_RS22090 565164a3b8e43d4eb4ead47c4dab3dd2 160 Gene3D G3DSA:3.90.950.20 10 156 8.7E-56 T 26-04-2016 IPR008136 CinA, C-terminal RGE_RS22090 565164a3b8e43d4eb4ead47c4dab3dd2 160 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 11 154 6.1E-45 T 26-04-2016 IPR008136 CinA, C-terminal RGE_RS22090 565164a3b8e43d4eb4ead47c4dab3dd2 160 SUPERFAMILY SSF142433 8 155 1.02E-51 T 26-04-2016 IPR008136 CinA, C-terminal RGE_RS22090 565164a3b8e43d4eb4ead47c4dab3dd2 160 Pfam PF02464 Competence-damaged protein 10 155 9.7E-56 T 26-04-2016 IPR008136 CinA, C-terminal RGE_RS22090 565164a3b8e43d4eb4ead47c4dab3dd2 160 PANTHER PTHR13939 10 154 8.9E-57 T 26-04-2016 RGE_RS13630 dcd7d43a78a7d7a5d7522e382fe29c4e 291 TIGRFAM TIGR03464 HpnC: squalene synthase HpnC 18 285 3.7E-93 T 26-04-2016 IPR017827 Squalene synthase HpnC RGE_RS13630 dcd7d43a78a7d7a5d7522e382fe29c4e 291 SUPERFAMILY SSF48576 19 289 1.31E-68 T 26-04-2016 IPR008949 Isoprenoid synthase domain RGE_RS13630 dcd7d43a78a7d7a5d7522e382fe29c4e 291 Gene3D G3DSA:1.10.600.10 22 288 3.3E-58 T 26-04-2016 IPR008949 Isoprenoid synthase domain RGE_RS13630 dcd7d43a78a7d7a5d7522e382fe29c4e 291 Pfam PF00494 Squalene/phytoene synthase 20 272 5.1E-58 T 26-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 RGE_RS13630 dcd7d43a78a7d7a5d7522e382fe29c4e 291 PANTHER PTHR31480 22 284 6.6E-53 T 26-04-2016 RGE_RS13630 dcd7d43a78a7d7a5d7522e382fe29c4e 291 PANTHER PTHR31480:SF8 22 284 6.6E-53 T 26-04-2016 RGE_RS09410 c2c2a42e9f39f5227ff6e0d3a0a82283 146 PANTHER PTHR11049 29 143 6.4E-25 T 26-04-2016 RGE_RS09410 c2c2a42e9f39f5227ff6e0d3a0a82283 146 PANTHER PTHR11049:SF8 29 143 6.4E-25 T 26-04-2016 RGE_RS09410 c2c2a42e9f39f5227ff6e0d3a0a82283 146 Gene3D G3DSA:3.10.129.10 25 143 4.0E-27 T 26-04-2016 IPR029069 HotDog domain RGE_RS09410 c2c2a42e9f39f5227ff6e0d3a0a82283 146 SUPERFAMILY SSF54637 26 143 5.65E-26 T 26-04-2016 IPR029069 HotDog domain RGE_RS09410 c2c2a42e9f39f5227ff6e0d3a0a82283 146 Pfam PF03061 Thioesterase superfamily 41 107 3.0E-11 T 26-04-2016 IPR006683 Thioesterase domain RGE_RS22270 0651799fd94e96d50434b6c1ddc0bc0e 132 PANTHER PTHR11644 1 129 5.8E-44 T 26-04-2016 RGE_RS22270 0651799fd94e96d50434b6c1ddc0bc0e 132 Gene3D G3DSA:3.40.140.10 2 129 3.2E-45 T 26-04-2016 RGE_RS22270 0651799fd94e96d50434b6c1ddc0bc0e 132 SUPERFAMILY SSF53927 2 128 1.49E-40 T 26-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RGE_RS22270 0651799fd94e96d50434b6c1ddc0bc0e 132 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 51 91 - T 26-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RGE_RS22270 0651799fd94e96d50434b6c1ddc0bc0e 132 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 98 3.1E-13 T 26-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 RGE_RS22270 0651799fd94e96d50434b6c1ddc0bc0e 132 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 3 127 2.1E-41 T 26-04-2016 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 RGE_RS04760 234d2d15ef65c1d07b565fe9529b99c0 194 PANTHER PTHR30055 1 191 2.6E-22 T 26-04-2016 RGE_RS04760 234d2d15ef65c1d07b565fe9529b99c0 194 Gene3D G3DSA:1.10.10.60 2 62 2.4E-14 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04760 234d2d15ef65c1d07b565fe9529b99c0 194 SUPERFAMILY SSF48498 78 191 4.2E-18 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS04760 234d2d15ef65c1d07b565fe9529b99c0 194 SUPERFAMILY SSF46689 2 68 1.39E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04760 234d2d15ef65c1d07b565fe9529b99c0 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 57 5.9E-7 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS04760 234d2d15ef65c1d07b565fe9529b99c0 194 PANTHER PTHR30055:SF79 1 191 2.6E-22 T 26-04-2016 RGE_RS04760 234d2d15ef65c1d07b565fe9529b99c0 194 Gene3D G3DSA:1.10.357.10 67 192 1.5E-20 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS21265 e61e9736bf31c14556837960cc201488 422 SUPERFAMILY SSF53850 39 133 8.07E-52 T 26-04-2016 RGE_RS21265 e61e9736bf31c14556837960cc201488 422 SUPERFAMILY SSF53850 163 420 8.07E-52 T 26-04-2016 RGE_RS21265 e61e9736bf31c14556837960cc201488 422 PANTHER PTHR30222 4 123 8.9E-203 T 26-04-2016 RGE_RS21265 e61e9736bf31c14556837960cc201488 422 PANTHER PTHR30222 145 421 8.9E-203 T 26-04-2016 RGE_RS21265 e61e9736bf31c14556837960cc201488 422 Pfam PF13416 Bacterial extracellular solute-binding protein 53 352 3.3E-21 T 26-04-2016 RGE_RS21265 e61e9736bf31c14556837960cc201488 422 Gene3D G3DSA:3.40.190.10 174 317 1.2E-14 T 26-04-2016 RGE_RS21265 e61e9736bf31c14556837960cc201488 422 Gene3D G3DSA:3.40.190.10 318 362 2.7E-24 T 26-04-2016 RGE_RS21265 e61e9736bf31c14556837960cc201488 422 Gene3D G3DSA:3.40.190.10 38 141 2.7E-24 T 26-04-2016 RGE_RS21265 e61e9736bf31c14556837960cc201488 422 PANTHER PTHR30222:SF8 4 123 8.9E-203 T 26-04-2016 RGE_RS21265 e61e9736bf31c14556837960cc201488 422 PANTHER PTHR30222:SF8 145 421 8.9E-203 T 26-04-2016 RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 SUPERFAMILY SSF52540 3 302 5.08E-85 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 Pfam PF01926 50S ribosome-binding GTPase 5 115 5.2E-22 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 Gene3D G3DSA:1.10.150.300 131 201 9.5E-28 T 26-04-2016 IPR023192 TGS-like domain RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 PIRSF PIRSF006641 1 364 1.2E-150 T 26-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 Gene3D G3DSA:3.40.50.300 202 267 3.8E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 Gene3D G3DSA:3.40.50.300 4 130 3.8E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 Gene3D G3DSA:3.10.20.30 268 364 1.8E-48 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 PANTHER PTHR23305 1 364 7.8E-205 T 26-04-2016 RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 364 2.3E-151 T 26-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 1.7E-34 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 1.7E-34 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.7E-34 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 1.7E-34 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 Pfam PF06071 Protein of unknown function (DUF933) 280 363 1.2E-38 T 26-04-2016 IPR013029 Domain of unknown function DUF933 RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 364 44.17 T 26-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RGE_RS20330 4644ff605e79aae35c9b96a9a19c9357 364 SUPERFAMILY SSF81271 280 360 3.05E-35 T 26-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RGE_RS01385 ce5fff647dc1a715300d7b7fe02a407f 363 Pfam PF00990 Diguanylate cyclase, GGDEF domain 203 358 1.3E-19 T 26-04-2016 IPR000160 GGDEF domain RGE_RS01385 ce5fff647dc1a715300d7b7fe02a407f 363 SUPERFAMILY SSF55073 208 362 2.59E-23 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS01385 ce5fff647dc1a715300d7b7fe02a407f 363 Gene3D G3DSA:3.30.70.270 205 362 2.4E-25 T 26-04-2016 RGE_RS01385 ce5fff647dc1a715300d7b7fe02a407f 363 SMART SM00267 192 363 7.3E-16 T 26-04-2016 IPR000160 GGDEF domain RGE_RS01385 ce5fff647dc1a715300d7b7fe02a407f 363 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 201 362 4.6E-22 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07330 8b45a3a44e2b7dcce05103ac2f1f888a 498 Pfam PF07364 Metallopeptidase family M81 2 291 8.3E-94 T 26-04-2016 IPR015995 Microcystin LR degradation protein MlrC, N-terminal RGE_RS07330 8b45a3a44e2b7dcce05103ac2f1f888a 498 Pfam PF07171 MlrC C-terminus 303 489 2.7E-53 T 26-04-2016 IPR010799 Microcystin LR degradation protein MlrC, C-terminal RGE_RS07330 8b45a3a44e2b7dcce05103ac2f1f888a 498 PIRSF PIRSF012702 1 498 2.2E-159 T 26-04-2016 IPR009197 Microcystin LR degradation protein MlrC RGE_RS15520 95e827d2f7d527f12deaf6e55d1fe7ab 496 Pfam PF12801 4Fe-4S binding domain 108 148 4.7E-11 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS15520 95e827d2f7d527f12deaf6e55d1fe7ab 496 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 283 294 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS15520 95e827d2f7d527f12deaf6e55d1fe7ab 496 Gene3D G3DSA:3.30.70.20 292 340 8.8E-7 T 26-04-2016 RGE_RS15520 95e827d2f7d527f12deaf6e55d1fe7ab 496 Pfam PF13746 4Fe-4S dicluster domain 230 335 3.2E-43 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS15520 95e827d2f7d527f12deaf6e55d1fe7ab 496 SUPERFAMILY SSF54862 116 161 2.02E-32 T 26-04-2016 RGE_RS15520 95e827d2f7d527f12deaf6e55d1fe7ab 496 SUPERFAMILY SSF54862 207 378 2.02E-32 T 26-04-2016 RGE_RS15520 95e827d2f7d527f12deaf6e55d1fe7ab 496 PANTHER PTHR24960 36 410 8.4E-131 T 26-04-2016 RGE_RS15520 95e827d2f7d527f12deaf6e55d1fe7ab 496 Gene3D G3DSA:2.60.40.10 371 496 8.0E-32 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS15520 95e827d2f7d527f12deaf6e55d1fe7ab 496 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 53 476 9.0E-153 T 26-04-2016 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021 RGE_RS15520 95e827d2f7d527f12deaf6e55d1fe7ab 496 Gene3D G3DSA:1.10.1060.10 234 291 1.8E-8 T 26-04-2016 RGE_RS15520 95e827d2f7d527f12deaf6e55d1fe7ab 496 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 371 495 7.6E-27 T 26-04-2016 IPR032879 FixG, C-terminal immunoglobulin-like domain RGE_RS15520 95e827d2f7d527f12deaf6e55d1fe7ab 496 PANTHER PTHR24960:SF45 36 410 8.4E-131 T 26-04-2016 RGE_RS13220 f932c19b85f0af06a51002ce140853d3 121 PANTHER PTHR21011 1 121 3.0E-37 T 26-04-2016 RGE_RS13220 f932c19b85f0af06a51002ce140853d3 121 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 5.5E-31 T 26-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS13220 f932c19b85f0af06a51002ce140853d3 121 PANTHER PTHR21011:SF1 1 121 3.0E-37 T 26-04-2016 RGE_RS13220 f932c19b85f0af06a51002ce140853d3 121 Gene3D G3DSA:3.30.70.60 1 104 1.1E-40 T 26-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RGE_RS13220 f932c19b85f0af06a51002ce140853d3 121 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.509 T 26-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS13220 f932c19b85f0af06a51002ce140853d3 121 SUPERFAMILY SSF54995 1 104 2.49E-35 T 26-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS13220 f932c19b85f0af06a51002ce140853d3 121 Pfam PF01250 Ribosomal protein S6 3 91 4.1E-26 T 26-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RGE_RS14710 d323c9a780ae4ca8354eafbcf816048a 481 Gene3D G3DSA:3.40.50.980 3 136 1.6E-13 T 26-04-2016 RGE_RS14710 d323c9a780ae4ca8354eafbcf816048a 481 Gene3D G3DSA:3.40.50.980 137 302 3.7E-23 T 26-04-2016 RGE_RS14710 d323c9a780ae4ca8354eafbcf816048a 481 Gene3D G3DSA:2.30.38.10 303 358 3.0E-6 T 26-04-2016 RGE_RS14710 d323c9a780ae4ca8354eafbcf816048a 481 ProSitePatterns PS00455 Putative AMP-binding domain signature. 128 139 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS14710 d323c9a780ae4ca8354eafbcf816048a 481 PANTHER PTHR24096 8 434 3.0E-54 T 26-04-2016 RGE_RS14710 d323c9a780ae4ca8354eafbcf816048a 481 SUPERFAMILY SSF56801 3 468 5.63E-76 T 26-04-2016 RGE_RS14710 d323c9a780ae4ca8354eafbcf816048a 481 Pfam PF00501 AMP-binding enzyme 3 367 4.1E-45 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS02055 f3bf0914a5bacbe04a3049bf43f1ce15 393 Pfam PF13692 Glycosyl transferases group 1 207 344 2.7E-26 T 26-04-2016 RGE_RS02055 f3bf0914a5bacbe04a3049bf43f1ce15 393 PANTHER PTHR12526 138 385 3.8E-50 T 26-04-2016 RGE_RS02055 f3bf0914a5bacbe04a3049bf43f1ce15 393 SUPERFAMILY SSF53756 13 383 5.89E-69 T 26-04-2016 RGE_RS02055 f3bf0914a5bacbe04a3049bf43f1ce15 393 Pfam PF13439 Glycosyltransferase Family 4 23 183 2.0E-17 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS02055 f3bf0914a5bacbe04a3049bf43f1ce15 393 TIGRFAM TIGR03088 stp2: sugar transferase, PEP-CTERM/EpsH1 system associated 10 384 2.9E-153 T 26-04-2016 IPR017522 Sugar transferase, PEP-CTERM, Stp2 RGE_RS02055 f3bf0914a5bacbe04a3049bf43f1ce15 393 Gene3D G3DSA:3.40.50.2000 166 361 1.5E-24 T 26-04-2016 RGE_RS21630 f7cce809e991debee9b13ee0fb514a04 1137 Pfam PF05567 Neisseria PilC beta-propeller domain 678 980 2.3E-29 T 26-04-2016 IPR008707 PilC beta-propeller domain RGE_RS03290 205f96e8c718018bea8650e58ecba30b 532 SUPERFAMILY SSF51004 115 525 3.53E-77 T 26-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain RGE_RS03290 205f96e8c718018bea8650e58ecba30b 532 Pfam PF02239 Cytochrome D1 heme domain 142 523 4.3E-103 T 26-04-2016 RGE_RS03290 205f96e8c718018bea8650e58ecba30b 532 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 38 105 2.3E-11 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03290 205f96e8c718018bea8650e58ecba30b 532 SUPERFAMILY SSF46626 6 116 9.31E-19 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03290 205f96e8c718018bea8650e58ecba30b 532 Gene3D G3DSA:2.140.10.20 247 519 4.5E-51 T 26-04-2016 IPR003143 Cytochrome cd1-nitrite reductase, C-terminal domain RGE_RS03290 205f96e8c718018bea8650e58ecba30b 532 Gene3D G3DSA:1.10.760.10 23 108 1.9E-20 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03290 205f96e8c718018bea8650e58ecba30b 532 Gene3D G3DSA:2.130.10.10 133 246 5.4E-14 T 26-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RGE_RS19300 cfb484c28d5b0a70d739274474b30956 107 PANTHER PTHR33755 1 103 3.3E-14 T 26-04-2016 RGE_RS19300 cfb484c28d5b0a70d739274474b30956 107 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 96 4.4E-16 T 26-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RGE_RS01490 c132149c56172057545cd541ffd7f229 491 Pfam PF00425 chorismate binding enzyme 222 476 1.2E-94 T 26-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal RGE_RS01490 c132149c56172057545cd541ffd7f229 491 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 484 2.1E-159 T 26-04-2016 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RGE_RS01490 c132149c56172057545cd541ffd7f229 491 Pfam PF04715 Anthranilate synthase component I, N terminal region 27 170 1.8E-31 T 26-04-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RGE_RS01490 c132149c56172057545cd541ffd7f229 491 PRINTS PR00095 Anthranilate synthase component I signature 324 337 1.9E-23 T 26-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RGE_RS01490 c132149c56172057545cd541ffd7f229 491 PRINTS PR00095 Anthranilate synthase component I signature 338 351 1.9E-23 T 26-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RGE_RS01490 c132149c56172057545cd541ffd7f229 491 PRINTS PR00095 Anthranilate synthase component I signature 418 432 1.9E-23 T 26-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RGE_RS01490 c132149c56172057545cd541ffd7f229 491 PRINTS PR00095 Anthranilate synthase component I signature 433 447 1.9E-23 T 26-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RGE_RS01490 c132149c56172057545cd541ffd7f229 491 Gene3D G3DSA:3.60.120.10 13 489 2.4E-172 T 26-04-2016 IPR005801 ADC synthase GO:0009058 RGE_RS01490 c132149c56172057545cd541ffd7f229 491 PANTHER PTHR11236 6 489 1.2E-213 T 26-04-2016 RGE_RS01490 c132149c56172057545cd541ffd7f229 491 SUPERFAMILY SSF56322 15 485 2.35E-153 T 26-04-2016 IPR005801 ADC synthase GO:0009058 RGE_RS01490 c132149c56172057545cd541ffd7f229 491 PANTHER PTHR11236:SF9 6 489 1.2E-213 T 26-04-2016 RGE_RS05775 ee3203186bb44015f7effaaa32fcfef7 235 PIRSF PIRSF000498 1 208 6.4E-55 T 26-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS05775 ee3203186bb44015f7effaaa32fcfef7 235 SUPERFAMILY SSF63380 1 89 4.17E-22 T 26-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RGE_RS05775 ee3203186bb44015f7effaaa32fcfef7 235 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 203 1.1E-54 T 26-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS05775 ee3203186bb44015f7effaaa32fcfef7 235 SUPERFAMILY SSF63380 94 201 1.02E-26 T 26-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RGE_RS05775 ee3203186bb44015f7effaaa32fcfef7 235 PANTHER PTHR21098 1 235 1.7E-82 T 26-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS05775 ee3203186bb44015f7effaaa32fcfef7 235 Pfam PF00677 Lumazine binding domain 101 186 7.7E-20 T 26-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS05775 ee3203186bb44015f7effaaa32fcfef7 235 Pfam PF00677 Lumazine binding domain 3 88 4.3E-19 T 26-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RGE_RS05775 ee3203186bb44015f7effaaa32fcfef7 235 Gene3D G3DSA:2.40.30.20 5 104 3.2E-26 T 26-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS05775 ee3203186bb44015f7effaaa32fcfef7 235 Gene3D G3DSA:2.40.30.20 105 187 5.2E-24 T 26-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RGE_RS09115 56c4b4fec1702be2309ef0dfc15a376b 660 Pfam PF13193 AMP-binding enzyme C-terminal domain 543 625 2.6E-26 T 26-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RGE_RS09115 56c4b4fec1702be2309ef0dfc15a376b 660 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 8 660 49.82 T 26-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 RGE_RS09115 56c4b4fec1702be2309ef0dfc15a376b 660 Pfam PF00501 AMP-binding enzyme 96 534 2.0E-91 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS09115 56c4b4fec1702be2309ef0dfc15a376b 660 SUPERFAMILY SSF56801 15 655 5.89E-172 T 26-04-2016 RGE_RS09115 56c4b4fec1702be2309ef0dfc15a376b 660 Gene3D G3DSA:3.30.300.30 529 638 1.6E-26 T 26-04-2016 RGE_RS09115 56c4b4fec1702be2309ef0dfc15a376b 660 Gene3D G3DSA:3.40.50.980 272 432 2.3E-29 T 26-04-2016 RGE_RS09115 56c4b4fec1702be2309ef0dfc15a376b 660 Gene3D G3DSA:3.40.50.980 85 271 1.3E-38 T 26-04-2016 RGE_RS09115 56c4b4fec1702be2309ef0dfc15a376b 660 PANTHER PTHR24095 9 656 5.8E-269 T 26-04-2016 RGE_RS09115 56c4b4fec1702be2309ef0dfc15a376b 660 Gene3D G3DSA:2.30.38.10 449 528 1.9E-9 T 26-04-2016 RGE_RS09115 56c4b4fec1702be2309ef0dfc15a376b 660 ProSitePatterns PS00455 Putative AMP-binding domain signature. 266 277 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS09115 56c4b4fec1702be2309ef0dfc15a376b 660 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 28 658 6.8E-286 T 26-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 RGE_RS09115 56c4b4fec1702be2309ef0dfc15a376b 660 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 31 86 7.5E-20 T 26-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 RGE_RS16075 ef04e9e4d5226d126dac0ed086b4c23c 371 PANTHER PTHR10520:SF41 52 351 3.8E-52 T 26-04-2016 RGE_RS16075 ef04e9e4d5226d126dac0ed086b4c23c 371 Gene3D G3DSA:3.30.1330.10 45 183 6.4E-22 T 26-04-2016 IPR016188 PurM-like, N-terminal domain RGE_RS16075 ef04e9e4d5226d126dac0ed086b4c23c 371 Pfam PF00586 AIR synthase related protein, N-terminal domain 84 179 6.0E-8 T 26-04-2016 IPR016188 PurM-like, N-terminal domain RGE_RS16075 ef04e9e4d5226d126dac0ed086b4c23c 371 SUPERFAMILY SSF56042 188 355 3.84E-34 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS16075 ef04e9e4d5226d126dac0ed086b4c23c 371 Pfam PF02769 AIR synthase related protein, C-terminal domain 193 352 1.5E-13 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS16075 ef04e9e4d5226d126dac0ed086b4c23c 371 Gene3D G3DSA:3.90.650.10 189 354 7.1E-36 T 26-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RGE_RS16075 ef04e9e4d5226d126dac0ed086b4c23c 371 PANTHER PTHR10520 52 351 3.8E-52 T 26-04-2016 RGE_RS16075 ef04e9e4d5226d126dac0ed086b4c23c 371 SUPERFAMILY SSF55326 45 183 2.27E-18 T 26-04-2016 RGE_RS17550 98f20b4f8aa5134e8aa928c1a8c3c7da 337 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 3 329 3.1E-93 T 26-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RGE_RS17550 98f20b4f8aa5134e8aa928c1a8c3c7da 337 Gene3D G3DSA:3.20.20.70 1 331 1.2E-107 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS17550 98f20b4f8aa5134e8aa928c1a8c3c7da 337 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 26-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RGE_RS17550 98f20b4f8aa5134e8aa928c1a8c3c7da 337 SUPERFAMILY SSF51569 3 329 1.76E-104 T 26-04-2016 RGE_RS17550 98f20b4f8aa5134e8aa928c1a8c3c7da 337 PIRSF PIRSF001359 1 329 1.9E-81 T 26-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RGE_RS17550 98f20b4f8aa5134e8aa928c1a8c3c7da 337 Pfam PF01116 Fructose-bisphosphate aldolase class-II 6 328 1.5E-92 T 26-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RGE_RS17550 98f20b4f8aa5134e8aa928c1a8c3c7da 337 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 332 4.2E-183 T 26-04-2016 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS17550 98f20b4f8aa5134e8aa928c1a8c3c7da 337 PANTHER PTHR30304 1 333 2.7E-114 T 26-04-2016 RGE_RS09810 3e126f40815118f812a5f5a284bd41d5 90 SMART SM00530 26 81 3.0E-12 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS09810 3e126f40815118f812a5f5a284bd41d5 90 PANTHER PTHR10245 14 84 2.0E-15 T 26-04-2016 RGE_RS09810 3e126f40815118f812a5f5a284bd41d5 90 SUPERFAMILY SSF47413 17 86 2.06E-16 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS09810 3e126f40815118f812a5f5a284bd41d5 90 Gene3D G3DSA:1.10.260.40 20 85 4.4E-20 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS09810 3e126f40815118f812a5f5a284bd41d5 90 Pfam PF13560 Helix-turn-helix domain 22 81 1.6E-13 T 26-04-2016 RGE_RS08870 84dc4296485cd2bd28cc32035827ea26 569 Pfam PF00580 UvrD/REP helicase N-terminal domain 15 107 3.9E-5 T 26-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RGE_RS08870 84dc4296485cd2bd28cc32035827ea26 569 Pfam PF00580 UvrD/REP helicase N-terminal domain 127 221 5.9E-17 T 26-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RGE_RS08870 84dc4296485cd2bd28cc32035827ea26 569 Gene3D G3DSA:3.40.50.300 128 223 5.6E-22 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08870 84dc4296485cd2bd28cc32035827ea26 569 Gene3D G3DSA:3.40.50.300 12 121 1.8E-11 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08870 84dc4296485cd2bd28cc32035827ea26 569 SUPERFAMILY SSF52540 6 331 8.05E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08870 84dc4296485cd2bd28cc32035827ea26 569 SUPERFAMILY SSF52540 421 564 8.05E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08870 84dc4296485cd2bd28cc32035827ea26 569 PANTHER PTHR11070 20 410 1.7E-34 T 26-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RGE_RS08870 84dc4296485cd2bd28cc32035827ea26 569 PANTHER PTHR11070 476 555 1.7E-34 T 26-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RGE_RS08870 84dc4296485cd2bd28cc32035827ea26 569 Gene3D G3DSA:3.40.50.300 499 563 3.1E-12 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08870 84dc4296485cd2bd28cc32035827ea26 569 Gene3D G3DSA:3.40.50.300 280 346 3.1E-12 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10025 0d32fdf6860b2a839034399031ab63ca 418 Gene3D G3DSA:2.60.120.580 156 173 4.3E-61 T 26-04-2016 RGE_RS10025 0d32fdf6860b2a839034399031ab63ca 418 Gene3D G3DSA:2.60.120.580 222 290 4.3E-61 T 26-04-2016 RGE_RS10025 0d32fdf6860b2a839034399031ab63ca 418 Gene3D G3DSA:2.60.120.580 6 95 4.3E-61 T 26-04-2016 RGE_RS10025 0d32fdf6860b2a839034399031ab63ca 418 SUPERFAMILY SSF141130 21 173 4.05E-71 T 26-04-2016 RGE_RS10025 0d32fdf6860b2a839034399031ab63ca 418 SUPERFAMILY SSF141130 222 393 4.05E-71 T 26-04-2016 RGE_RS10025 0d32fdf6860b2a839034399031ab63ca 418 PANTHER PTHR31891:SF1 1 400 2.7E-193 T 26-04-2016 RGE_RS10025 0d32fdf6860b2a839034399031ab63ca 418 PANTHER PTHR31891 1 400 2.7E-193 T 26-04-2016 RGE_RS10025 0d32fdf6860b2a839034399031ab63ca 418 Gene3D G3DSA:3.10.28.20 335 393 3.1E-4 T 26-04-2016 RGE_RS10025 0d32fdf6860b2a839034399031ab63ca 418 Pfam PF03069 Acetamidase/Formamidase family 8 394 7.9E-162 T 26-04-2016 IPR004304 Acetamidase/Formamidase GO:0016811 RGE_RS04670 3ff2df807dc6733397a79aa1abf854b6 393 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 29 391 23.702 T 26-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS04670 3ff2df807dc6733397a79aa1abf854b6 393 PANTHER PTHR22926 2 156 2.8E-152 T 26-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS04670 3ff2df807dc6733397a79aa1abf854b6 393 PANTHER PTHR22926 179 393 2.8E-152 T 26-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS04670 3ff2df807dc6733397a79aa1abf854b6 393 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 72 82 8.6E-5 T 26-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS04670 3ff2df807dc6733397a79aa1abf854b6 393 PANTHER PTHR22926:SF5 2 156 2.8E-152 T 26-04-2016 RGE_RS04670 3ff2df807dc6733397a79aa1abf854b6 393 PANTHER PTHR22926:SF5 179 393 2.8E-152 T 26-04-2016 RGE_RS04670 3ff2df807dc6733397a79aa1abf854b6 393 ProSitePatterns PS01347 MraY family signature 1. 72 84 - T 26-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS04670 3ff2df807dc6733397a79aa1abf854b6 393 Pfam PF00953 Glycosyl transferase family 4 103 311 2.6E-36 T 26-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS04670 3ff2df807dc6733397a79aa1abf854b6 393 ProSitePatterns PS01348 MraY family signature 2. 216 227 - T 26-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS04670 3ff2df807dc6733397a79aa1abf854b6 393 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 42 393 5.9E-119 T 26-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS00840 dc58a2ec64782c977048e7bab8c77580 247 Pfam PF00072 Response regulator receiver domain 120 234 2.0E-14 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS00840 dc58a2ec64782c977048e7bab8c77580 247 PANTHER PTHR26402 117 235 2.7E-19 T 26-04-2016 RGE_RS00840 dc58a2ec64782c977048e7bab8c77580 247 SMART SM00448 117 235 1.0E-20 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS00840 dc58a2ec64782c977048e7bab8c77580 247 SUPERFAMILY SSF52172 116 238 4.98E-23 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS00840 dc58a2ec64782c977048e7bab8c77580 247 Gene3D G3DSA:3.40.50.2300 116 237 3.7E-21 T 26-04-2016 RGE_RS13450 6ef29767df5c92da2aed7e4f766bfcfa 656 SMART SM00491 488 622 1.1E-31 T 26-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RGE_RS13450 6ef29767df5c92da2aed7e4f766bfcfa 656 Pfam PF13307 Helicase C-terminal domain 472 635 5.6E-35 T 26-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RGE_RS13450 6ef29767df5c92da2aed7e4f766bfcfa 656 SUPERFAMILY SSF52540 471 561 5.32E-8 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13450 6ef29767df5c92da2aed7e4f766bfcfa 656 SUPERFAMILY SSF52540 592 618 5.32E-8 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13450 6ef29767df5c92da2aed7e4f766bfcfa 656 Gene3D G3DSA:3.40.50.300 28 125 2.2E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13450 6ef29767df5c92da2aed7e4f766bfcfa 656 Gene3D G3DSA:3.40.50.300 196 254 2.2E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13450 6ef29767df5c92da2aed7e4f766bfcfa 656 PANTHER PTHR11472 26 636 2.0E-152 T 26-04-2016 RGE_RS13450 6ef29767df5c92da2aed7e4f766bfcfa 656 Gene3D G3DSA:3.40.50.300 471 620 2.9E-6 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13450 6ef29767df5c92da2aed7e4f766bfcfa 656 SUPERFAMILY SSF52540 22 116 4.58E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13450 6ef29767df5c92da2aed7e4f766bfcfa 656 SUPERFAMILY SSF52540 193 250 4.58E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13450 6ef29767df5c92da2aed7e4f766bfcfa 656 SUPERFAMILY SSF52540 592 618 4.58E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13450 6ef29767df5c92da2aed7e4f766bfcfa 656 PANTHER PTHR11472:SF37 26 636 2.0E-152 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 4.3E-7 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 4.3E-7 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 Pfam PF00117 Glutamine amidotransferase class-I 4 190 5.5E-52 T 26-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 7.8E-14 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 7.8E-14 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 7.8E-14 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 Gene3D G3DSA:3.40.50.880 2 192 8.0E-66 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PANTHER PTHR11922 1 192 1.0E-91 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PRINTS PR00097 Anthranilate synthase component II signature 47 56 9.5E-34 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PRINTS PR00097 Anthranilate synthase component II signature 2 16 9.5E-34 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PRINTS PR00097 Anthranilate synthase component II signature 99 107 9.5E-34 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PRINTS PR00097 Anthranilate synthase component II signature 119 131 9.5E-34 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PRINTS PR00097 Anthranilate synthase component II signature 74 85 9.5E-34 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PRINTS PR00097 Anthranilate synthase component II signature 169 182 9.5E-34 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 SUPERFAMILY SSF52317 1 192 8.8E-54 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 PANTHER PTHR11922:SF7 1 192 1.0E-91 T 26-04-2016 RGE_RS01495 8772d7b42744cf92d05ddf654d8f2f18 196 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 1.7E-74 T 26-04-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RGE_RS07745 034edd378e6e9fb7f8149f654ba0291f 412 PANTHER PTHR30213:SF0 30 362 6.2E-75 T 26-04-2016 RGE_RS07745 034edd378e6e9fb7f8149f654ba0291f 412 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 13 319 21.946 T 26-04-2016 IPR023679 Uncharacterised protein family UPF0761, bacterial RGE_RS07745 034edd378e6e9fb7f8149f654ba0291f 412 PANTHER PTHR30213 30 362 6.2E-75 T 26-04-2016 RGE_RS07745 034edd378e6e9fb7f8149f654ba0291f 412 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 34 286 1.6E-64 T 26-04-2016 IPR017039 Virulence factor BrkB RGE_RS07745 034edd378e6e9fb7f8149f654ba0291f 412 Pfam PF03631 Virulence factor BrkB 42 287 1.0E-54 T 26-04-2016 IPR017039 Virulence factor BrkB RGE_RS03705 b06d9b4a1283b50c6915960fa64034f8 331 SUPERFAMILY SSF56112 7 330 1.4E-75 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS03705 b06d9b4a1283b50c6915960fa64034f8 331 PANTHER PTHR39573 1 330 1.0E-125 T 26-04-2016 RGE_RS03705 b06d9b4a1283b50c6915960fa64034f8 331 Hamap MF_01497 Stress response kinase A [srkA]. 3 331 44.373 T 26-04-2016 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 RGE_RS03705 b06d9b4a1283b50c6915960fa64034f8 331 PANTHER PTHR39573:SF1 1 330 1.0E-125 T 26-04-2016 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 RGE_RS03705 b06d9b4a1283b50c6915960fa64034f8 331 Pfam PF01636 Phosphotransferase enzyme family 33 269 1.5E-35 T 26-04-2016 IPR002575 Aminoglycoside phosphotransferase RGE_RS03705 b06d9b4a1283b50c6915960fa64034f8 331 Gene3D G3DSA:3.90.1200.10 120 330 2.1E-44 T 26-04-2016 RGE_RS22205 b7d2a583a483ec42838cbd9449d5056a 424 SUPERFAMILY SSF51338 360 405 1.71E-15 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS22205 b7d2a583a483ec42838cbd9449d5056a 424 SUPERFAMILY SSF51338 7 50 1.71E-15 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS22205 b7d2a583a483ec42838cbd9449d5056a 424 Gene3D G3DSA:3.20.20.140 64 348 1.7E-111 T 26-04-2016 RGE_RS22205 b7d2a583a483ec42838cbd9449d5056a 424 SUPERFAMILY SSF51556 50 369 8.51E-110 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS22205 b7d2a583a483ec42838cbd9449d5056a 424 Gene3D G3DSA:2.30.40.10 2 63 8.8E-18 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS22205 b7d2a583a483ec42838cbd9449d5056a 424 PANTHER PTHR32027 1 410 1.1E-130 T 26-04-2016 RGE_RS22205 b7d2a583a483ec42838cbd9449d5056a 424 PANTHER PTHR32027:SF0 1 410 1.1E-130 T 26-04-2016 RGE_RS22205 b7d2a583a483ec42838cbd9449d5056a 424 Gene3D G3DSA:2.30.40.10 349 398 7.4E-4 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS22205 b7d2a583a483ec42838cbd9449d5056a 424 Pfam PF07969 Amidohydrolase family 39 398 2.2E-48 T 26-04-2016 IPR013108 Amidohydrolase 3 RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 SMART SM00938 4 105 8.5E-68 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 26-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 PIRSF PIRSF039144 1 112 6.7E-56 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 Gene3D G3DSA:3.30.70.120 1 112 1.9E-51 T 26-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 PRINTS PR00340 P-II protein signature 83 103 3.3E-45 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 PRINTS PR00340 P-II protein signature 2 17 3.3E-45 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 PRINTS PR00340 P-II protein signature 52 75 3.3E-45 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 PRINTS PR00340 P-II protein signature 23 41 3.3E-45 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 SUPERFAMILY SSF54913 1 112 2.26E-46 T 26-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 26-04-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.9E-44 T 26-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 PANTHER PTHR30115 1 112 1.1E-67 T 26-04-2016 RGE_RS13710 41983c49c66f45f214a3b586ca40cfcc 112 PANTHER PTHR30115:SF12 1 112 1.1E-67 T 26-04-2016 RGE_RS19600 c68a3264cf3f61e253adb4f2163ed11c 156 Pfam PF08909 Domain of unknown function (DUF1854) 26 155 1.1E-47 T 26-04-2016 IPR015005 Domain of unknown function DUF1854 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 513 4.5E-156 T 26-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 Gene3D G3DSA:3.30.1360.40 236 333 5.8E-40 T 26-04-2016 IPR024946 Arginine repressor C-terminal-like domain RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 599 647 2.8E-9 T 26-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 763 808 9.2E-10 T 26-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 660 703 1.0E-8 T 26-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 549 594 1.5E-9 T 26-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 708 757 3.1E-8 T 26-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 813 856 2.2E-11 T 26-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 863 29.049 T 26-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 Gene3D G3DSA:2.120.10.90 542 859 3.8E-129 T 26-04-2016 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 PANTHER PTHR10169 457 829 0.0 T 26-04-2016 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 PANTHER PTHR10169 5 417 0.0 T 26-04-2016 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 PANTHER PTHR10169:SF48 457 829 0.0 T 26-04-2016 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 PANTHER PTHR10169:SF48 5 417 0.0 T 26-04-2016 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 SUPERFAMILY SSF56719 30 523 1.57E-177 T 26-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 Gene3D G3DSA:3.90.199.10 34 216 5.4E-86 T 26-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 10 859 0.0 T 26-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 Gene3D G3DSA:1.10.268.10 363 504 1.6E-47 T 26-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 SMART SM00434 11 506 1.9E-286 T 26-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RGE_RS06830 1554ee09863fa49d21e3c76d3a446542 886 SUPERFAMILY SSF101904 544 866 2.62E-104 T 26-04-2016 RGE_RS05845 45c3935aa68839be56c7b74f1a13d731 196 Pfam PF01553 Acyltransferase 39 148 3.9E-12 T 26-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RGE_RS05845 45c3935aa68839be56c7b74f1a13d731 196 Gene3D G3DSA:3.40.1130.10 37 135 9.2E-5 T 26-04-2016 RGE_RS05845 45c3935aa68839be56c7b74f1a13d731 196 SMART SM00563 42 155 2.9E-24 T 26-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RGE_RS05845 45c3935aa68839be56c7b74f1a13d731 196 PANTHER PTHR10434 12 177 1.3E-47 T 26-04-2016 RGE_RS05845 45c3935aa68839be56c7b74f1a13d731 196 PANTHER PTHR10434:SF9 12 177 1.3E-47 T 26-04-2016 RGE_RS05845 45c3935aa68839be56c7b74f1a13d731 196 SUPERFAMILY SSF69593 20 163 1.06E-20 T 26-04-2016 RGE_RS01330 4398f5e0ca09e6fb1cbfa0d9e69d727f 166 SUPERFAMILY SSF46785 2 122 1.77E-26 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01330 4398f5e0ca09e6fb1cbfa0d9e69d727f 166 PANTHER PTHR33221:SF1 2 142 2.0E-36 T 26-04-2016 RGE_RS01330 4398f5e0ca09e6fb1cbfa0d9e69d727f 166 PANTHER PTHR33221 2 142 2.0E-36 T 26-04-2016 RGE_RS01330 4398f5e0ca09e6fb1cbfa0d9e69d727f 166 Gene3D G3DSA:1.10.10.10 1 126 5.8E-26 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS01330 4398f5e0ca09e6fb1cbfa0d9e69d727f 166 Pfam PF02082 Transcriptional regulator 1 83 1.4E-24 T 26-04-2016 IPR000944 Transcription regulator Rrf2-type RGE_RS01330 4398f5e0ca09e6fb1cbfa0d9e69d727f 166 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 26-04-2016 IPR030489 Transcription regulator Rrf2-type, conserved site RGE_RS01330 4398f5e0ca09e6fb1cbfa0d9e69d727f 166 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 120 4.0E-31 T 26-04-2016 IPR000944 Transcription regulator Rrf2-type RGE_RS03325 99fa7bb9b32bb453d6e313b0c4f30b0f 427 Gene3D G3DSA:3.60.120.10 79 421 4.9E-76 T 26-04-2016 IPR005801 ADC synthase GO:0009058 RGE_RS03325 99fa7bb9b32bb453d6e313b0c4f30b0f 427 Pfam PF00425 chorismate binding enzyme 169 413 1.6E-58 T 26-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal RGE_RS03325 99fa7bb9b32bb453d6e313b0c4f30b0f 427 PANTHER PTHR11236:SF3 85 413 1.0E-64 T 26-04-2016 RGE_RS03325 99fa7bb9b32bb453d6e313b0c4f30b0f 427 SUPERFAMILY SSF56322 79 420 3.4E-75 T 26-04-2016 IPR005801 ADC synthase GO:0009058 RGE_RS03325 99fa7bb9b32bb453d6e313b0c4f30b0f 427 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 82 419 1.5E-73 T 26-04-2016 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 RGE_RS03325 99fa7bb9b32bb453d6e313b0c4f30b0f 427 PANTHER PTHR11236 85 413 1.0E-64 T 26-04-2016 RGE_RS12760 808890fd09f244da78c531af034956bd 259 Pfam PF07722 Peptidase C26 6 222 1.9E-66 T 26-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 RGE_RS12760 808890fd09f244da78c531af034956bd 259 SUPERFAMILY SSF52317 21 245 1.33E-39 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS12760 808890fd09f244da78c531af034956bd 259 PANTHER PTHR11922:SF18 27 68 1.2E-54 T 26-04-2016 RGE_RS12760 808890fd09f244da78c531af034956bd 259 PANTHER PTHR11922:SF18 84 247 1.2E-54 T 26-04-2016 RGE_RS12760 808890fd09f244da78c531af034956bd 259 PANTHER PTHR11922 27 68 1.2E-54 T 26-04-2016 RGE_RS12760 808890fd09f244da78c531af034956bd 259 PANTHER PTHR11922 84 247 1.2E-54 T 26-04-2016 RGE_RS12760 808890fd09f244da78c531af034956bd 259 Gene3D G3DSA:3.40.50.880 5 249 1.1E-46 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS08920 3b87406a37816feb3165c8f3659f0e5f 311 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 1 301 50.249 T 26-04-2016 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 RGE_RS08920 3b87406a37816feb3165c8f3659f0e5f 311 SUPERFAMILY SSF51395 1 294 7.69E-61 T 26-04-2016 RGE_RS08920 3b87406a37816feb3165c8f3659f0e5f 311 PANTHER PTHR11082:SF26 1 298 9.5E-126 T 26-04-2016 RGE_RS08920 3b87406a37816feb3165c8f3659f0e5f 311 Gene3D G3DSA:3.20.20.70 1 230 8.9E-60 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS08920 3b87406a37816feb3165c8f3659f0e5f 311 Pfam PF01207 Dihydrouridine synthase (Dus) 1 228 1.5E-64 T 26-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RGE_RS08920 3b87406a37816feb3165c8f3659f0e5f 311 PANTHER PTHR11082 1 298 9.5E-126 T 26-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RGE_RS08920 3b87406a37816feb3165c8f3659f0e5f 311 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 85 103 - T 26-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RGE_RS08920 3b87406a37816feb3165c8f3659f0e5f 311 PIRSF PIRSF006621 1 308 9.0E-69 T 26-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RGE_RS11330 0d56e1bec448eb87e557c6e5d3f600fd 148 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 24 117 8.9E-21 T 26-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RGE_RS11330 0d56e1bec448eb87e557c6e5d3f600fd 148 PANTHER PTHR33337:SF4 1 132 7.0E-31 T 26-04-2016 RGE_RS11330 0d56e1bec448eb87e557c6e5d3f600fd 148 SUPERFAMILY SSF51316 2 134 9.83E-39 T 26-04-2016 IPR011057 Mss4-like RGE_RS11330 0d56e1bec448eb87e557c6e5d3f600fd 148 PANTHER PTHR33337 1 132 7.0E-31 T 26-04-2016 RGE_RS11330 0d56e1bec448eb87e557c6e5d3f600fd 148 Gene3D G3DSA:3.90.1590.10 3 137 5.0E-36 T 26-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RGE_RS20540 3dc04f11fd95a75ca54d4dc8fbe9c4b3 659 PANTHER PTHR11731 358 658 1.6E-76 T 26-04-2016 RGE_RS20540 3dc04f11fd95a75ca54d4dc8fbe9c4b3 659 Pfam PF00326 Prolyl oligopeptidase family 450 658 2.5E-36 T 26-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RGE_RS20540 3dc04f11fd95a75ca54d4dc8fbe9c4b3 659 SUPERFAMILY SSF82171 37 223 1.22E-5 T 26-04-2016 RGE_RS20540 3dc04f11fd95a75ca54d4dc8fbe9c4b3 659 PANTHER PTHR11731:SF119 358 658 1.6E-76 T 26-04-2016 RGE_RS20540 3dc04f11fd95a75ca54d4dc8fbe9c4b3 659 Gene3D G3DSA:2.120.10.30 39 136 9.0E-6 T 26-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RGE_RS20540 3dc04f11fd95a75ca54d4dc8fbe9c4b3 659 SUPERFAMILY SSF53474 400 657 2.63E-65 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS20540 3dc04f11fd95a75ca54d4dc8fbe9c4b3 659 Gene3D G3DSA:3.40.50.1820 401 657 3.8E-66 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07375 9a471f3e0c1abfd945cb5cfbd198ef97 285 PANTHER PTHR21057 5 284 4.8E-160 T 26-04-2016 RGE_RS07375 9a471f3e0c1abfd945cb5cfbd198ef97 285 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 13 274 3.0E-121 T 26-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RGE_RS07375 9a471f3e0c1abfd945cb5cfbd198ef97 285 SUPERFAMILY SSF51569 2 277 3.57E-101 T 26-04-2016 RGE_RS07375 9a471f3e0c1abfd945cb5cfbd198ef97 285 Pfam PF00793 DAHP synthetase I family 8 269 3.2E-63 T 26-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RGE_RS07375 9a471f3e0c1abfd945cb5cfbd198ef97 285 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 8 276 52.714 T 26-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RGE_RS07375 9a471f3e0c1abfd945cb5cfbd198ef97 285 PANTHER PTHR21057:SF2 5 284 4.8E-160 T 26-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RGE_RS07375 9a471f3e0c1abfd945cb5cfbd198ef97 285 Gene3D G3DSA:3.20.20.70 12 279 6.9E-115 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 PANTHER PTHR11751 128 152 2.6E-23 T 26-04-2016 RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 PANTHER PTHR11751 16 82 2.6E-23 T 26-04-2016 RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 PANTHER PTHR11751:SF292 128 152 2.6E-23 T 26-04-2016 RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 PANTHER PTHR11751:SF292 16 82 2.6E-23 T 26-04-2016 RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 Gene3D G3DSA:1.10.10.10 15 86 8.9E-27 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 Pfam PF07702 UTRA domain 106 241 5.3E-33 T 26-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 SUPERFAMILY SSF46785 15 93 1.44E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 Gene3D G3DSA:3.40.1410.10 106 247 1.7E-43 T 26-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 SMART SM00866 100 242 5.1E-32 T 26-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 9.4E-7 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 9.4E-7 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 SUPERFAMILY SSF64288 69 247 6.6E-40 T 26-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 80 6.6E-22 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS05990 a5c0a0b1e1a3da76a05518de9faf6278 248 SMART SM00345 21 80 6.2E-22 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS12600 de3e9fb94a17aa68bdaf642075e4803e 88 PANTHER PTHR37465 3 87 3.5E-13 T 26-04-2016 RGE_RS12600 de3e9fb94a17aa68bdaf642075e4803e 88 PANTHER PTHR37465:SF1 3 87 3.5E-13 T 26-04-2016 RGE_RS12600 de3e9fb94a17aa68bdaf642075e4803e 88 Pfam PF05488 PAAR motif 8 81 4.6E-26 T 26-04-2016 IPR008727 PAAR motif RGE_RS14420 499d64ac3d4bf528eedd36b005e265ff 369 Gene3D G3DSA:2.40.50.100 86 122 2.9E-6 T 26-04-2016 RGE_RS14420 499d64ac3d4bf528eedd36b005e265ff 369 Gene3D G3DSA:2.40.50.100 186 222 2.9E-6 T 26-04-2016 RGE_RS14420 499d64ac3d4bf528eedd36b005e265ff 369 SUPERFAMILY SSF111369 89 234 2.48E-8 T 26-04-2016 RGE_RS14420 499d64ac3d4bf528eedd36b005e265ff 369 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 72 243 6.0E-9 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS14420 499d64ac3d4bf528eedd36b005e265ff 369 PANTHER PTHR30469 110 366 4.4E-13 T 26-04-2016 RGE_RS17495 57ad835e91cfc5f76ae632cdccd49005 113 PIRSF PIRSF004761 1 113 2.9E-29 T 26-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 RGE_RS17495 57ad835e91cfc5f76ae632cdccd49005 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 110 1.8E-26 T 26-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 RGE_RS17495 57ad835e91cfc5f76ae632cdccd49005 113 Hamap MF_00213 Probable hydrogenase nickel incorporation protein HypA [hypA]. 1 113 21.202 T 26-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 RGE_RS17495 57ad835e91cfc5f76ae632cdccd49005 113 PANTHER PTHR34535 2 111 1.3E-31 T 26-04-2016 RGE_RS17495 57ad835e91cfc5f76ae632cdccd49005 113 PANTHER PTHR34535:SF2 2 111 1.3E-31 T 26-04-2016 RGE_RS18605 84e7904ae170cb077702b024e0a950f1 516 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 2 500 1.0E-204 T 26-04-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RGE_RS18605 84e7904ae170cb077702b024e0a950f1 516 PANTHER PTHR10362:SF7 1 502 4.3E-230 T 26-04-2016 RGE_RS18605 84e7904ae170cb077702b024e0a950f1 516 PANTHER PTHR10362 1 502 4.3E-230 T 26-04-2016 RGE_RS18605 84e7904ae170cb077702b024e0a950f1 516 SUPERFAMILY SSF48557 3 499 2.9E-180 T 26-04-2016 IPR008948 L-Aspartase-like GO:0003824 RGE_RS18605 84e7904ae170cb077702b024e0a950f1 516 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 1 505 43.282 T 26-04-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 RGE_RS18605 84e7904ae170cb077702b024e0a950f1 516 Gene3D G3DSA:1.10.275.10 3 198 8.7E-69 T 26-04-2016 IPR024083 Fumarase/histidase, N-terminal RGE_RS18605 84e7904ae170cb077702b024e0a950f1 516 Gene3D G3DSA:1.20.200.10 199 503 2.5E-123 T 26-04-2016 RGE_RS18605 84e7904ae170cb077702b024e0a950f1 516 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 136 152 - T 26-04-2016 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 RGE_RS18605 84e7904ae170cb077702b024e0a950f1 516 Pfam PF00221 Aromatic amino acid lyase 8 471 1.3E-183 T 26-04-2016 IPR001106 Aromatic amino acid lyase RGE_RS18470 5359d6439d5733bb85c19c92c44db8a9 265 PANTHER PTHR11922:SF18 46 240 2.1E-44 T 26-04-2016 RGE_RS18470 5359d6439d5733bb85c19c92c44db8a9 265 SUPERFAMILY SSF52317 39 264 3.37E-38 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS18470 5359d6439d5733bb85c19c92c44db8a9 265 PANTHER PTHR11922 46 240 2.1E-44 T 26-04-2016 RGE_RS18470 5359d6439d5733bb85c19c92c44db8a9 265 Gene3D G3DSA:3.40.50.880 29 264 1.5E-43 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS18470 5359d6439d5733bb85c19c92c44db8a9 265 Pfam PF07722 Peptidase C26 28 237 6.0E-55 T 26-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 RGE_RS03405 18620674c148898969587ff4b6d0028c 891 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 25 212 1.8E-19 T 26-04-2016 IPR006483 CRISPR-associated Cas3-HD domain RGE_RS03405 18620674c148898969587ff4b6d0028c 891 Gene3D G3DSA:3.40.50.300 526 641 4.0E-9 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03405 18620674c148898969587ff4b6d0028c 891 SUPERFAMILY SSF52540 290 341 9.14E-27 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03405 18620674c148898969587ff4b6d0028c 891 SUPERFAMILY SSF52540 503 641 9.14E-27 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03405 18620674c148898969587ff4b6d0028c 891 SUPERFAMILY SSF52540 377 469 9.14E-27 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03405 18620674c148898969587ff4b6d0028c 891 Gene3D G3DSA:3.40.50.300 279 475 2.5E-12 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03405 18620674c148898969587ff4b6d0028c 891 Pfam PF00271 Helicase conserved C-terminal domain 540 639 1.5E-4 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS03405 18620674c148898969587ff4b6d0028c 891 TIGRFAM TIGR01587 cas3_core: CRISPR-associated helicase Cas3 292 642 1.1E-63 T 26-04-2016 IPR006474 Helicase Cas3, CRISPR-associated, core RGE_RS03405 18620674c148898969587ff4b6d0028c 891 SMART SM00490 551 640 2.4E-4 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS04140 2b10273368507f3bcbcb71d92c85e28c 398 PANTHER PTHR11014:SF63 1 397 1.3E-158 T 26-04-2016 RGE_RS04140 2b10273368507f3bcbcb71d92c85e28c 398 Pfam PF07687 Peptidase dimerisation domain 185 283 5.2E-14 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS04140 2b10273368507f3bcbcb71d92c85e28c 398 PANTHER PTHR11014 1 397 1.3E-158 T 26-04-2016 RGE_RS04140 2b10273368507f3bcbcb71d92c85e28c 398 SUPERFAMILY SSF55031 183 296 6.67E-34 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS04140 2b10273368507f3bcbcb71d92c85e28c 398 PIRSF PIRSF005962 2 397 7.0E-134 T 26-04-2016 IPR017439 Amidohydrolase GO:0016787 RGE_RS04140 2b10273368507f3bcbcb71d92c85e28c 398 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 381 3.7E-107 T 26-04-2016 IPR017439 Amidohydrolase GO:0016787 RGE_RS04140 2b10273368507f3bcbcb71d92c85e28c 398 SUPERFAMILY SSF53187 298 395 7.14E-89 T 26-04-2016 RGE_RS04140 2b10273368507f3bcbcb71d92c85e28c 398 SUPERFAMILY SSF53187 4 197 7.14E-89 T 26-04-2016 RGE_RS04140 2b10273368507f3bcbcb71d92c85e28c 398 Pfam PF01546 Peptidase family M20/M25/M40 73 388 1.8E-35 T 26-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RGE_RS04140 2b10273368507f3bcbcb71d92c85e28c 398 Gene3D G3DSA:3.40.630.10 4 178 3.8E-102 T 26-04-2016 RGE_RS04140 2b10273368507f3bcbcb71d92c85e28c 398 Gene3D G3DSA:3.40.630.10 298 395 3.8E-102 T 26-04-2016 RGE_RS04140 2b10273368507f3bcbcb71d92c85e28c 398 Gene3D G3DSA:3.30.70.360 181 297 2.5E-45 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS17700 97a7176bafe8e23bce5f70836ebf0157 352 Gene3D G3DSA:3.40.50.720 1 133 5.1E-36 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS17700 97a7176bafe8e23bce5f70836ebf0157 352 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 226 3.3E-10 T 26-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RGE_RS17700 97a7176bafe8e23bce5f70836ebf0157 352 PANTHER PTHR22604 1 347 2.7E-100 T 26-04-2016 RGE_RS17700 97a7176bafe8e23bce5f70836ebf0157 352 PANTHER PTHR22604:SF53 1 347 2.7E-100 T 26-04-2016 RGE_RS17700 97a7176bafe8e23bce5f70836ebf0157 352 SUPERFAMILY SSF51735 3 198 6.19E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS17700 97a7176bafe8e23bce5f70836ebf0157 352 Gene3D G3DSA:3.30.360.10 134 347 3.2E-34 T 26-04-2016 RGE_RS17700 97a7176bafe8e23bce5f70836ebf0157 352 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 123 4.1E-20 T 26-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RGE_RS08935 da344133617fda696837e84fedd97cd2 103 Pfam PF04892 VanZ like family 26 97 1.9E-8 T 26-04-2016 IPR006976 VanZ-like RGE_RS08935 da344133617fda696837e84fedd97cd2 103 SUPERFAMILY SSF144091 3 101 2.49E-5 T 26-04-2016 RGE_RS07875 124b46bd8ee32b64a6bee8b91cea2b30 375 Pfam PF01266 FAD dependent oxidoreductase 6 365 7.0E-59 T 26-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RGE_RS07875 124b46bd8ee32b64a6bee8b91cea2b30 375 PANTHER PTHR13847:SF207 1 365 5.0E-145 T 26-04-2016 RGE_RS07875 124b46bd8ee32b64a6bee8b91cea2b30 375 Gene3D G3DSA:3.50.50.60 327 365 2.6E-27 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS07875 124b46bd8ee32b64a6bee8b91cea2b30 375 Gene3D G3DSA:3.50.50.60 3 84 2.6E-27 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS07875 124b46bd8ee32b64a6bee8b91cea2b30 375 Gene3D G3DSA:3.50.50.60 139 220 2.6E-27 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS07875 124b46bd8ee32b64a6bee8b91cea2b30 375 Gene3D G3DSA:3.30.9.10 86 138 7.0E-6 T 26-04-2016 RGE_RS07875 124b46bd8ee32b64a6bee8b91cea2b30 375 Gene3D G3DSA:3.30.9.10 224 235 7.0E-6 T 26-04-2016 RGE_RS07875 124b46bd8ee32b64a6bee8b91cea2b30 375 PANTHER PTHR13847 1 365 5.0E-145 T 26-04-2016 RGE_RS07875 124b46bd8ee32b64a6bee8b91cea2b30 375 SUPERFAMILY SSF51905 5 221 1.55E-38 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS07875 124b46bd8ee32b64a6bee8b91cea2b30 375 SUPERFAMILY SSF51905 327 369 1.55E-38 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS19010 e753aa92ffe1e3762bda23cf95c9d1b9 289 Gene3D G3DSA:1.10.530.10 134 249 2.6E-24 T 26-04-2016 RGE_RS19010 e753aa92ffe1e3762bda23cf95c9d1b9 289 SUPERFAMILY SSF53955 119 246 1.0E-23 T 26-04-2016 IPR023346 Lysozyme-like domain RGE_RS19010 e753aa92ffe1e3762bda23cf95c9d1b9 289 PANTHER PTHR21666 109 214 2.0E-17 T 26-04-2016 RGE_RS19010 e753aa92ffe1e3762bda23cf95c9d1b9 289 Pfam PF01464 Transglycosylase SLT domain 137 214 1.8E-17 T 26-04-2016 IPR008258 Transglycosylase SLT domain 1 RGE_RS17340 f4ef99f5f01c7fb3ca65023f04ac19cb 379 PIRSF PIRSF000138 1 379 1.7E-124 T 26-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 RGE_RS17340 f4ef99f5f01c7fb3ca65023f04ac19cb 379 Pfam PF01070 FMN-dependent dehydrogenase 13 375 9.6E-128 T 26-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 RGE_RS17340 f4ef99f5f01c7fb3ca65023f04ac19cb 379 Gene3D G3DSA:3.20.20.70 5 376 2.0E-136 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS17340 f4ef99f5f01c7fb3ca65023f04ac19cb 379 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 26-04-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 RGE_RS17340 f4ef99f5f01c7fb3ca65023f04ac19cb 379 PANTHER PTHR10578:SF65 1 378 5.7E-165 T 26-04-2016 RGE_RS17340 f4ef99f5f01c7fb3ca65023f04ac19cb 379 PANTHER PTHR10578 1 378 5.7E-165 T 26-04-2016 RGE_RS17340 f4ef99f5f01c7fb3ca65023f04ac19cb 379 SUPERFAMILY SSF51395 223 376 3.05E-97 T 26-04-2016 RGE_RS17340 f4ef99f5f01c7fb3ca65023f04ac19cb 379 SUPERFAMILY SSF51395 5 193 3.05E-97 T 26-04-2016 RGE_RS17340 f4ef99f5f01c7fb3ca65023f04ac19cb 379 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 379 72.202 T 26-04-2016 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 RGE_RS04130 d1179510cdd5b41de9e8ce1685453098 323 Pfam PF12833 Helix-turn-helix domain 249 303 6.3E-11 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS04130 d1179510cdd5b41de9e8ce1685453098 323 Gene3D G3DSA:1.10.10.60 230 281 7.8E-14 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04130 d1179510cdd5b41de9e8ce1685453098 323 SUPERFAMILY SSF46689 226 276 7.17E-8 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04130 d1179510cdd5b41de9e8ce1685453098 323 PANTHER PTHR11019 120 301 1.5E-33 T 26-04-2016 RGE_RS04130 d1179510cdd5b41de9e8ce1685453098 323 SMART SM00342 243 310 6.2E-4 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS04130 d1179510cdd5b41de9e8ce1685453098 323 SUPERFAMILY SSF52317 1 208 2.54E-30 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS04130 d1179510cdd5b41de9e8ce1685453098 323 Gene3D G3DSA:3.40.50.880 4 229 2.1E-35 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS04130 d1179510cdd5b41de9e8ce1685453098 323 Pfam PF01965 DJ-1/PfpI family 114 185 1.2E-9 T 26-04-2016 IPR002818 DJ-1/PfpI RGE_RS04130 d1179510cdd5b41de9e8ce1685453098 323 PANTHER PTHR11019:SF58 120 301 1.5E-33 T 26-04-2016 RGE_RS11600 312a929560ef3557f9a67bdec48babcb 359 SUPERFAMILY SSF52821 93 133 1.7E-20 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS11600 312a929560ef3557f9a67bdec48babcb 359 SUPERFAMILY SSF52821 3 66 1.7E-20 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS11600 312a929560ef3557f9a67bdec48babcb 359 PANTHER PTHR30401 21 262 1.3E-57 T 26-04-2016 RGE_RS11600 312a929560ef3557f9a67bdec48babcb 359 Gene3D G3DSA:3.40.250.10 5 132 1.0E-28 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS11600 312a929560ef3557f9a67bdec48babcb 359 SMART SM00450 6 134 1.8E-10 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS11600 312a929560ef3557f9a67bdec48babcb 359 Gene3D G3DSA:3.40.50.300 147 261 4.6E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11600 312a929560ef3557f9a67bdec48babcb 359 PANTHER PTHR30401:SF0 21 262 1.3E-57 T 26-04-2016 RGE_RS11600 312a929560ef3557f9a67bdec48babcb 359 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 20 324 7.1E-107 T 26-04-2016 IPR017582 tRNA 2-selenouridine synthase GO:0016785|GO:0043828|GO:0070329 RGE_RS11600 312a929560ef3557f9a67bdec48babcb 359 Pfam PF00581 Rhodanese-like domain 8 130 3.9E-8 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS01685 1b0baf2605069f168a9b9031db568ab1 131 Gene3D G3DSA:3.30.1490.10 75 130 2.2E-28 T 26-04-2016 RGE_RS01685 1b0baf2605069f168a9b9031db568ab1 131 Gene3D G3DSA:3.30.1370.30 2 72 6.5E-29 T 26-04-2016 RGE_RS01685 1b0baf2605069f168a9b9031db568ab1 131 Pfam PF00410 Ribosomal protein S8 5 130 3.4E-50 T 26-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RGE_RS01685 1b0baf2605069f168a9b9031db568ab1 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 131 32.499 T 26-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RGE_RS01685 1b0baf2605069f168a9b9031db568ab1 131 SUPERFAMILY SSF56047 2 130 5.49E-48 T 26-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RGE_RS01685 1b0baf2605069f168a9b9031db568ab1 131 PANTHER PTHR11758 1 131 9.3E-60 T 26-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RGE_RS01685 1b0baf2605069f168a9b9031db568ab1 131 ProSitePatterns PS00053 Ribosomal protein S8 signature. 101 118 - T 26-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RGE_RS08680 c54303efe72f1525332a37d61643cd22 619 PANTHER PTHR21000 411 619 0.0 T 26-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS08680 c54303efe72f1525332a37d61643cd22 619 PANTHER PTHR21000 1 376 0.0 T 26-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS08680 c54303efe72f1525332a37d61643cd22 619 SUPERFAMILY SSF143975 4 425 5.1E-133 T 26-04-2016 RGE_RS08680 c54303efe72f1525332a37d61643cd22 619 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 514 525 - T 26-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS08680 c54303efe72f1525332a37d61643cd22 619 PANTHER PTHR21000:SF11 411 619 0.0 T 26-04-2016 RGE_RS08680 c54303efe72f1525332a37d61643cd22 619 PANTHER PTHR21000:SF11 1 376 0.0 T 26-04-2016 RGE_RS08680 c54303efe72f1525332a37d61643cd22 619 SUPERFAMILY SSF52016 426 614 1.1E-60 T 26-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RGE_RS08680 c54303efe72f1525332a37d61643cd22 619 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 613 5.5E-251 T 26-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS08680 c54303efe72f1525332a37d61643cd22 619 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 26-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS08680 c54303efe72f1525332a37d61643cd22 619 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 613 44.292 T 26-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS08680 c54303efe72f1525332a37d61643cd22 619 Pfam PF00920 Dehydratase family 34 610 3.8E-217 T 26-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS14655 36e2bea22c58af28ed6a69a8b2b20bd6 225 Pfam PF00072 Response regulator receiver domain 4 112 5.0E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS14655 36e2bea22c58af28ed6a69a8b2b20bd6 225 Gene3D G3DSA:1.10.10.10 124 217 6.8E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14655 36e2bea22c58af28ed6a69a8b2b20bd6 225 PANTHER PTHR26402:SF279 1 224 1.4E-91 T 26-04-2016 RGE_RS14655 36e2bea22c58af28ed6a69a8b2b20bd6 225 SMART SM00862 145 217 1.9E-22 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS14655 36e2bea22c58af28ed6a69a8b2b20bd6 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 217 2.3E-18 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS14655 36e2bea22c58af28ed6a69a8b2b20bd6 225 PANTHER PTHR26402 1 224 1.4E-91 T 26-04-2016 RGE_RS14655 36e2bea22c58af28ed6a69a8b2b20bd6 225 SUPERFAMILY SSF52172 1 171 5.98E-36 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS14655 36e2bea22c58af28ed6a69a8b2b20bd6 225 Gene3D G3DSA:3.40.50.2300 1 123 1.9E-33 T 26-04-2016 RGE_RS14655 36e2bea22c58af28ed6a69a8b2b20bd6 225 SMART SM00448 1 112 9.2E-35 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17605 61f6b2bed885ebbaf7473562002d99c7 99 Gene3D G3DSA:3.10.20.30 10 93 3.7E-27 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS17605 61f6b2bed885ebbaf7473562002d99c7 99 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 14 81 2.9E-13 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS17605 61f6b2bed885ebbaf7473562002d99c7 99 SUPERFAMILY SSF54292 6 91 6.2E-27 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS13410 280264fbf5bdb43a59816df0df9a3c4b 317 Pfam PF13464 Domain of unknown function (DUF4115) 243 316 4.4E-23 T 26-04-2016 IPR025194 Domain of unknown function DUF4115 RGE_RS13410 280264fbf5bdb43a59816df0df9a3c4b 317 Gene3D G3DSA:1.10.260.40 12 76 3.5E-6 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS13410 280264fbf5bdb43a59816df0df9a3c4b 317 PANTHER PTHR34475 1 316 1.3E-23 T 26-04-2016 RGE_RS13410 280264fbf5bdb43a59816df0df9a3c4b 317 Pfam PF13413 Helix-turn-helix domain 18 78 4.4E-14 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS13410 280264fbf5bdb43a59816df0df9a3c4b 317 PANTHER PTHR34475:SF1 1 316 1.3E-23 T 26-04-2016 RGE_RS10355 1630316ea7f15905bdba630465652f7a 275 Gene3D G3DSA:1.10.10.60 177 228 1.8E-6 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS10355 1630316ea7f15905bdba630465652f7a 275 Gene3D G3DSA:1.10.10.60 229 274 2.5E-14 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS10355 1630316ea7f15905bdba630465652f7a 275 SUPERFAMILY SSF46689 229 274 2.54E-9 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS10355 1630316ea7f15905bdba630465652f7a 275 PANTHER PTHR11019:SF50 47 274 1.9E-23 T 26-04-2016 RGE_RS10355 1630316ea7f15905bdba630465652f7a 275 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 260 6.4E-6 T 26-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RGE_RS10355 1630316ea7f15905bdba630465652f7a 275 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 260 275 6.4E-6 T 26-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RGE_RS10355 1630316ea7f15905bdba630465652f7a 275 Pfam PF14525 AraC-binding-like domain 30 155 2.9E-7 T 26-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RGE_RS10355 1630316ea7f15905bdba630465652f7a 275 SMART SM00342 194 274 3.0E-19 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS10355 1630316ea7f15905bdba630465652f7a 275 PANTHER PTHR11019 47 274 1.9E-23 T 26-04-2016 RGE_RS10355 1630316ea7f15905bdba630465652f7a 275 Pfam PF12833 Helix-turn-helix domain 200 274 6.0E-23 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS00190 941a8fffc0c439bc7d7d89b0cadb46a9 284 SUPERFAMILY SSF51182 13 283 2.47E-85 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS00190 941a8fffc0c439bc7d7d89b0cadb46a9 284 Gene3D G3DSA:2.60.120.10 10 257 6.0E-86 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS00190 941a8fffc0c439bc7d7d89b0cadb46a9 284 Pfam PF02678 Pirin 33 128 6.5E-36 T 26-04-2016 IPR003829 Pirin, N-terminal domain RGE_RS00190 941a8fffc0c439bc7d7d89b0cadb46a9 284 PANTHER PTHR13903:SF8 2 282 2.8E-115 T 26-04-2016 RGE_RS00190 941a8fffc0c439bc7d7d89b0cadb46a9 284 PIRSF PIRSF006232 9 284 2.2E-95 T 26-04-2016 IPR012093 Pirin RGE_RS00190 941a8fffc0c439bc7d7d89b0cadb46a9 284 PANTHER PTHR13903 2 282 2.8E-115 T 26-04-2016 IPR012093 Pirin RGE_RS00190 941a8fffc0c439bc7d7d89b0cadb46a9 284 Pfam PF05726 Pirin C-terminal cupin domain 183 283 3.7E-30 T 26-04-2016 IPR008778 Pirin, C-terminal domain RGE_RS10450 96efa0ff91f8613e471ae05d6fb5e5dc 257 PANTHER PTHR19370 4 241 1.5E-112 T 26-04-2016 RGE_RS10450 96efa0ff91f8613e471ae05d6fb5e5dc 257 Gene3D G3DSA:3.40.50.80 98 255 4.1E-44 T 26-04-2016 RGE_RS10450 96efa0ff91f8613e471ae05d6fb5e5dc 257 Gene3D G3DSA:2.40.30.10 4 97 8.8E-30 T 26-04-2016 RGE_RS10450 96efa0ff91f8613e471ae05d6fb5e5dc 257 PANTHER PTHR19370:SF98 4 241 1.5E-112 T 26-04-2016 RGE_RS10450 96efa0ff91f8613e471ae05d6fb5e5dc 257 Pfam PF00970 Oxidoreductase FAD-binding domain 18 91 1.2E-8 T 26-04-2016 IPR008333 Oxidoreductase, FAD-binding domain RGE_RS10450 96efa0ff91f8613e471ae05d6fb5e5dc 257 Pfam PF00175 Oxidoreductase NAD-binding domain 114 228 2.8E-9 T 26-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RGE_RS10450 96efa0ff91f8613e471ae05d6fb5e5dc 257 SUPERFAMILY SSF63380 5 99 4.12E-24 T 26-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RGE_RS10450 96efa0ff91f8613e471ae05d6fb5e5dc 257 SUPERFAMILY SSF52343 103 254 3.8E-40 T 26-04-2016 RGE_RS10450 96efa0ff91f8613e471ae05d6fb5e5dc 257 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 136 145 1.5E-5 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS10450 96efa0ff91f8613e471ae05d6fb5e5dc 257 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 215 223 1.5E-5 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS10450 96efa0ff91f8613e471ae05d6fb5e5dc 257 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 51 58 1.5E-5 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS10450 96efa0ff91f8613e471ae05d6fb5e5dc 257 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 111 130 1.5E-5 T 26-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 PIRSF PIRSF000722 3 399 3.1E-133 T 26-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 PANTHER PTHR21060:SF11 3 404 1.2E-148 T 26-04-2016 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 PRINTS PR00471 Acetate kinase family signature 179 192 2.4E-41 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 PRINTS PR00471 Acetate kinase family signature 7 18 2.4E-41 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 PRINTS PR00471 Acetate kinase family signature 376 388 2.4E-41 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 PRINTS PR00471 Acetate kinase family signature 324 340 2.4E-41 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 PRINTS PR00471 Acetate kinase family signature 302 315 2.4E-41 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 PRINTS PR00471 Acetate kinase family signature 208 229 2.4E-41 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 Hamap MF_00020 Acetate kinase [ackA]. 1 398 148.668 T 26-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 208 225 - T 26-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 Pfam PF00871 Acetokinase family 7 389 3.3E-106 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 Gene3D G3DSA:3.30.420.40 211 394 6.6E-71 T 26-04-2016 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 TIGRFAM TIGR00016 ackA: acetate kinase 4 394 6.3E-107 T 26-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 Gene3D G3DSA:3.30.420.40 7 210 5.0E-5 T 26-04-2016 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 SUPERFAMILY SSF53067 6 197 5.99E-53 T 26-04-2016 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 SUPERFAMILY SSF53067 165 396 2.24E-75 T 26-04-2016 RGE_RS00690 005eb681fca6ccfb599a11a781d45da0 438 PANTHER PTHR21060 3 404 1.2E-148 T 26-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 SMART SM00881 4 103 3.4E-29 T 26-04-2016 IPR003781 CoA-binding GO:0048037 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 Gene3D G3DSA:3.40.50.720 2 128 1.1E-45 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 PANTHER PTHR11117:SF2 1 297 3.7E-152 T 26-04-2016 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 PRINTS PR01798 Succinyl-CoA synthase signature 186 204 5.19E-32 T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 PRINTS PR01798 Succinyl-CoA synthase signature 249 266 5.19E-32 T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 PRINTS PR01798 Succinyl-CoA synthase signature 217 230 5.19E-32 T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 PRINTS PR01798 Succinyl-CoA synthase signature 85 102 5.19E-32 T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 Gene3D G3DSA:3.40.50.261 129 296 7.8E-69 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 SUPERFAMILY SSF52210 132 296 2.62E-51 T 26-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 Pfam PF02629 CoA binding domain 6 102 6.9E-23 T 26-04-2016 IPR003781 CoA-binding GO:0048037 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 PANTHER PTHR11117 1 297 3.7E-152 T 26-04-2016 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 SUPERFAMILY SSF51735 1 118 1.18E-34 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 161 190 - T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 296 2.0E-122 T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 PIRSF PIRSF001553 1 297 5.5E-112 T 26-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 Pfam PF00549 CoA-ligase 160 271 1.4E-14 T 26-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RGE_RS06030 afeb64e63c595cb57d835bfcf21d65b8 297 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 245 258 - T 26-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RGE_RS02735 ad71a63846671544327fcb039d1a0274 636 PANTHER PTHR10742:SF255 187 619 2.2E-26 T 26-04-2016 RGE_RS02735 ad71a63846671544327fcb039d1a0274 636 PANTHER PTHR10742:SF255 65 169 2.2E-26 T 26-04-2016 RGE_RS02735 ad71a63846671544327fcb039d1a0274 636 Gene3D G3DSA:3.50.50.60 66 119 2.7E-6 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS02735 ad71a63846671544327fcb039d1a0274 636 SUPERFAMILY SSF51905 365 451 6.47E-12 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS02735 ad71a63846671544327fcb039d1a0274 636 SUPERFAMILY SSF51905 584 619 6.47E-12 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS02735 ad71a63846671544327fcb039d1a0274 636 SUPERFAMILY SSF51905 66 333 6.47E-12 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS02735 ad71a63846671544327fcb039d1a0274 636 Pfam PF13450 NAD(P)-binding Rossmann-like domain 71 126 7.8E-6 T 26-04-2016 RGE_RS02735 ad71a63846671544327fcb039d1a0274 636 PANTHER PTHR10742 187 619 2.2E-26 T 26-04-2016 RGE_RS02735 ad71a63846671544327fcb039d1a0274 636 PANTHER PTHR10742 65 169 2.2E-26 T 26-04-2016 RGE_RS02735 ad71a63846671544327fcb039d1a0274 636 Gene3D G3DSA:3.50.50.60 587 620 2.0E-4 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS02735 ad71a63846671544327fcb039d1a0274 636 Gene3D G3DSA:3.50.50.60 315 436 2.0E-4 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS05530 6986bea21f43ddd1f02982ef18c75584 439 Gene3D G3DSA:2.50.20.10 145 294 2.2E-37 T 26-04-2016 RGE_RS05530 6986bea21f43ddd1f02982ef18c75584 439 Gene3D G3DSA:2.50.20.10 327 434 2.2E-37 T 26-04-2016 RGE_RS05530 6986bea21f43ddd1f02982ef18c75584 439 Pfam PF07044 Protein of unknown function (DUF1329) 72 434 7.5E-125 T 26-04-2016 IPR010752 Protein of unknown function DUF1329 RGE_RS08660 844f1fb9e3c4a36d2a80f345940a04e9 591 PANTHER PTHR32089 1 10 6.4E-131 T 26-04-2016 RGE_RS08660 844f1fb9e3c4a36d2a80f345940a04e9 591 PANTHER PTHR32089 251 519 6.4E-131 T 26-04-2016 RGE_RS08660 844f1fb9e3c4a36d2a80f345940a04e9 591 Pfam PF12729 Four helix bundle sensory module for signal transduction 7 182 4.4E-22 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS08660 844f1fb9e3c4a36d2a80f345940a04e9 591 SMART SM00283 269 516 1.6E-96 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS08660 844f1fb9e3c4a36d2a80f345940a04e9 591 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 515 1.3E-58 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS08660 844f1fb9e3c4a36d2a80f345940a04e9 591 SUPERFAMILY SSF58104 252 517 1.44E-67 T 26-04-2016 RGE_RS08660 844f1fb9e3c4a36d2a80f345940a04e9 591 Gene3D G3DSA:1.10.287.950 284 488 2.5E-59 T 26-04-2016 RGE_RS08660 844f1fb9e3c4a36d2a80f345940a04e9 591 PANTHER PTHR32089:SF63 1 10 6.4E-131 T 26-04-2016 RGE_RS08660 844f1fb9e3c4a36d2a80f345940a04e9 591 PANTHER PTHR32089:SF63 251 519 6.4E-131 T 26-04-2016 RGE_RS21835 e3b63b9731891007928221dc7b626385 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 1.2E-8 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS21835 e3b63b9731891007928221dc7b626385 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 1.2E-8 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS21835 e3b63b9731891007928221dc7b626385 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 1.2E-8 T 26-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RGE_RS21835 e3b63b9731891007928221dc7b626385 154 PANTHER PTHR30154 1 142 8.7E-32 T 26-04-2016 RGE_RS21835 e3b63b9731891007928221dc7b626385 154 SMART SM00344 6 113 4.4E-22 T 26-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RGE_RS21835 e3b63b9731891007928221dc7b626385 154 Gene3D G3DSA:1.10.10.10 8 57 1.2E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS21835 e3b63b9731891007928221dc7b626385 154 Gene3D G3DSA:3.30.70.920 59 133 5.7E-16 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS21835 e3b63b9731891007928221dc7b626385 154 SUPERFAMILY SSF54909 68 142 3.75E-15 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS21835 e3b63b9731891007928221dc7b626385 154 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 53 1.0E-11 T 26-04-2016 RGE_RS21835 e3b63b9731891007928221dc7b626385 154 Pfam PF01037 Lrp/AsnC ligand binding domain 75 140 2.1E-13 T 26-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RGE_RS21835 e3b63b9731891007928221dc7b626385 154 SUPERFAMILY SSF46785 5 66 2.18E-12 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00830 3a3fc3ddcbce969cca360425709dd7d3 425 SUPERFAMILY SSF103473 6 411 5.75E-26 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS00830 3a3fc3ddcbce969cca360425709dd7d3 425 Gene3D G3DSA:1.20.1250.20 7 189 4.0E-13 T 26-04-2016 RGE_RS00830 3a3fc3ddcbce969cca360425709dd7d3 425 PANTHER PTHR23513 1 148 2.7E-72 T 26-04-2016 RGE_RS00830 3a3fc3ddcbce969cca360425709dd7d3 425 PANTHER PTHR23513 168 408 2.7E-72 T 26-04-2016 RGE_RS00830 3a3fc3ddcbce969cca360425709dd7d3 425 PANTHER PTHR23513:SF8 1 148 2.7E-72 T 26-04-2016 RGE_RS00830 3a3fc3ddcbce969cca360425709dd7d3 425 PANTHER PTHR23513:SF8 168 408 2.7E-72 T 26-04-2016 RGE_RS00830 3a3fc3ddcbce969cca360425709dd7d3 425 Pfam PF07690 Major Facilitator Superfamily 9 342 4.3E-17 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 257 277 8.8E-24 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 45 71 8.8E-24 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 16 32 8.8E-24 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 205 230 8.8E-24 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 281 307 8.8E-24 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 PRINTS PR00954 Flagellar motor switch protein FliG signature 125 148 8.8E-24 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 Pfam PF14841 FliG middle domain 126 200 5.7E-13 T 26-04-2016 IPR032779 Flagellar motor switch protein FliG, middle domain RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 Gene3D G3DSA:1.10.220.30 206 338 6.5E-27 T 26-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 SUPERFAMILY SSF48029 18 115 5.23E-14 T 26-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 PANTHER PTHR30534 3 342 2.2E-63 T 26-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 PANTHER PTHR30534:SF0 3 342 2.2E-63 T 26-04-2016 RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 Pfam PF01706 FliG C-terminal domain 226 332 2.0E-26 T 26-04-2016 IPR023087 Flagellar motor switch protein FliG, C-terminal RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 Gene3D G3DSA:1.10.220.30 19 80 1.2E-9 T 26-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 Gene3D G3DSA:1.10.220.30 117 201 1.7E-14 T 26-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 SUPERFAMILY SSF48029 126 333 3.92E-46 T 26-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RGE_RS09570 752d322f8dcbdded9250a2b66473bde6 342 Pfam PF14842 FliG N-terminal domain 17 112 5.4E-17 T 26-04-2016 IPR028263 Flagellar motor switch protein FliG, N-terminal domain RGE_RS19960 e71b6fdf3e58e103de42661d2034b4d9 283 Pfam PF02666 Phosphatidylserine decarboxylase 63 280 7.6E-60 T 26-04-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RGE_RS19960 e71b6fdf3e58e103de42661d2034b4d9 283 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 283 45.108 T 26-04-2016 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RGE_RS19960 e71b6fdf3e58e103de42661d2034b4d9 283 PANTHER PTHR10067 10 277 1.4E-101 T 26-04-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RGE_RS19960 e71b6fdf3e58e103de42661d2034b4d9 283 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 280 1.0E-72 T 26-04-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RGE_RS21020 cdfb992ceb06c15a91cfaad1156fca3a 282 Pfam PF01012 Electron transfer flavoprotein domain 23 213 2.5E-48 T 26-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RGE_RS21020 cdfb992ceb06c15a91cfaad1156fca3a 282 PANTHER PTHR21294:SF0 1 241 7.2E-105 T 26-04-2016 RGE_RS21020 cdfb992ceb06c15a91cfaad1156fca3a 282 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 162 182 - T 26-04-2016 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 RGE_RS21020 cdfb992ceb06c15a91cfaad1156fca3a 282 Gene3D G3DSA:3.40.50.620 1 248 2.4E-88 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS21020 cdfb992ceb06c15a91cfaad1156fca3a 282 SMART SM00893 22 218 1.2E-58 T 26-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RGE_RS21020 cdfb992ceb06c15a91cfaad1156fca3a 282 PANTHER PTHR21294 1 241 7.2E-105 T 26-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 RGE_RS21020 cdfb992ceb06c15a91cfaad1156fca3a 282 PIRSF PIRSF000090 1 271 9.4E-89 T 26-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 RGE_RS21020 cdfb992ceb06c15a91cfaad1156fca3a 282 SUPERFAMILY SSF52402 1 243 2.58E-74 T 26-04-2016 RGE_RS06070 4ab077ef2cb810b2da398f32d3279629 327 SMART SM00876 228 320 5.6E-40 T 26-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 RGE_RS06070 4ab077ef2cb810b2da398f32d3279629 327 Gene3D G3DSA:3.20.20.70 14 320 6.7E-100 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS06070 4ab077ef2cb810b2da398f32d3279629 327 PANTHER PTHR22976 15 327 2.2E-144 T 26-04-2016 RGE_RS06070 4ab077ef2cb810b2da398f32d3279629 327 Pfam PF04055 Radical SAM superfamily 58 213 5.7E-19 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS06070 4ab077ef2cb810b2da398f32d3279629 327 PANTHER PTHR22976:SF1 15 327 2.2E-144 T 26-04-2016 RGE_RS06070 4ab077ef2cb810b2da398f32d3279629 327 TIGRFAM TIGR00433 bioB: biotin synthase 23 318 9.2E-116 T 26-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 RGE_RS06070 4ab077ef2cb810b2da398f32d3279629 327 Hamap MF_01694 Biotin synthase [bioB]. 13 321 40.889 T 26-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 RGE_RS06070 4ab077ef2cb810b2da398f32d3279629 327 SMART SM00729 51 257 4.8E-36 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS06070 4ab077ef2cb810b2da398f32d3279629 327 PIRSF PIRSF001619 1 327 6.1E-123 T 26-04-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 RGE_RS06070 4ab077ef2cb810b2da398f32d3279629 327 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 228 318 3.9E-14 T 26-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 RGE_RS06070 4ab077ef2cb810b2da398f32d3279629 327 SUPERFAMILY SSF102114 14 320 3.79E-89 T 26-04-2016 RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 SUPERFAMILY SSF52172 9 159 1.71E-33 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 Gene3D G3DSA:1.10.10.10 147 203 2.2E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 7.0E-16 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 SMART SM00448 8 122 3.2E-29 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 PANTHER PTHR26402 8 202 4.9E-64 T 26-04-2016 RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 Gene3D G3DSA:3.40.50.2300 10 146 3.9E-33 T 26-04-2016 RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.2E-8 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.2E-8 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.2E-8 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 Pfam PF00072 Response regulator receiver domain 10 122 8.8E-26 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 SMART SM00421 146 203 1.9E-13 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 PANTHER PTHR26402:SF546 8 202 4.9E-64 T 26-04-2016 RGE_RS14050 a16fcc9224c6e46f1938a2bf7a672ba3 208 SUPERFAMILY SSF46894 143 203 2.55E-13 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS10395 ce44d06ad0512cff4f974099c78f0c66 153 PANTHER PTHR12714:SF5 6 153 8.4E-15 T 26-04-2016 RGE_RS10395 ce44d06ad0512cff4f974099c78f0c66 153 PANTHER PTHR12714 6 153 8.4E-15 T 26-04-2016 RGE_RS10395 ce44d06ad0512cff4f974099c78f0c66 153 Pfam PF04191 Phospholipid methyltransferase 71 134 5.4E-8 T 26-04-2016 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|UniPathway: UPA00753 RGE_RS06635 4770b0a9b9100ac181a949d429da47a8 329 PANTHER PTHR34308 48 329 2.4E-21 T 26-04-2016 RGE_RS06635 4770b0a9b9100ac181a949d429da47a8 329 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 329 59.246 T 26-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 RGE_RS06635 4770b0a9b9100ac181a949d429da47a8 329 PANTHER PTHR34308:SF1 48 329 2.4E-21 T 26-04-2016 RGE_RS06635 4770b0a9b9100ac181a949d429da47a8 329 Pfam PF03186 CobD/Cbib protein 28 264 7.5E-23 T 26-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 RGE_RS12725 7645ef409370b67ac91c02007ed44753 431 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 12 250 1.4E-105 T 26-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 RGE_RS12725 7645ef409370b67ac91c02007ed44753 431 PANTHER PTHR21631 6 426 1.1E-166 T 26-04-2016 RGE_RS12725 7645ef409370b67ac91c02007ed44753 431 Pfam PF00463 Isocitrate lyase family 251 423 5.3E-44 T 26-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 RGE_RS12725 7645ef409370b67ac91c02007ed44753 431 Pfam PF00463 Isocitrate lyase family 15 250 1.9E-59 T 26-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 RGE_RS12725 7645ef409370b67ac91c02007ed44753 431 SUPERFAMILY SSF51621 3 426 2.15E-156 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS12725 7645ef409370b67ac91c02007ed44753 431 Gene3D G3DSA:3.20.20.60 8 409 5.0E-163 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS12725 7645ef409370b67ac91c02007ed44753 431 PIRSF PIRSF001362 1 429 1.3E-234 T 26-04-2016 RGE_RS12725 7645ef409370b67ac91c02007ed44753 431 ProSitePatterns PS00161 Isocitrate lyase signature. 188 193 - T 26-04-2016 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 RGE_RS06915 04a86407674ad11125efee793a23517c 219 PANTHER PTHR41535 96 218 1.3E-21 T 26-04-2016 RGE_RS06915 04a86407674ad11125efee793a23517c 219 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 125 136 - T 26-04-2016 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 RGE_RS06915 04a86407674ad11125efee793a23517c 219 PANTHER PTHR41535:SF1 96 218 1.3E-21 T 26-04-2016 RGE_RS06915 04a86407674ad11125efee793a23517c 219 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 106 217 1.3E-29 T 26-04-2016 IPR011969 Clan AA aspartic peptidase, C-terminal RGE_RS06915 04a86407674ad11125efee793a23517c 219 Pfam PF13975 gag-polyprotein putative aspartyl protease 115 204 7.7E-24 T 26-04-2016 RGE_RS06915 04a86407674ad11125efee793a23517c 219 SUPERFAMILY SSF50630 105 208 8.26E-20 T 26-04-2016 IPR021109 Aspartic peptidase domain RGE_RS08335 beaf9c38c35068ab014e72bdc6066ca9 254 Pfam PF00535 Glycosyl transferase family 2 5 130 1.6E-13 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS08335 beaf9c38c35068ab014e72bdc6066ca9 254 SUPERFAMILY SSF53448 1 145 3.56E-23 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS08335 beaf9c38c35068ab014e72bdc6066ca9 254 Gene3D G3DSA:3.90.550.10 2 149 6.2E-17 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS10915 bd175e09a2387229213573aee7f955f3 310 PANTHER PTHR10264:SF46 57 247 1.3E-62 T 26-04-2016 RGE_RS10915 bd175e09a2387229213573aee7f955f3 310 PANTHER PTHR10264 57 247 1.3E-62 T 26-04-2016 IPR001972 Stomatin family GO:0016020 RGE_RS10915 bd175e09a2387229213573aee7f955f3 310 SUPERFAMILY SSF117892 109 245 2.09E-10 T 26-04-2016 IPR001107 Band 7 domain RGE_RS10915 bd175e09a2387229213573aee7f955f3 310 Pfam PF01145 SPFH domain / Band 7 family 76 254 9.1E-23 T 26-04-2016 IPR001107 Band 7 domain RGE_RS10915 bd175e09a2387229213573aee7f955f3 310 PANTHER PTHR10264:SF46 270 285 1.3E-62 T 26-04-2016 RGE_RS10915 bd175e09a2387229213573aee7f955f3 310 PANTHER PTHR10264 270 285 1.3E-62 T 26-04-2016 IPR001972 Stomatin family GO:0016020 RGE_RS10915 bd175e09a2387229213573aee7f955f3 310 SMART SM00244 72 246 2.0E-10 T 26-04-2016 IPR001107 Band 7 domain RGE_RS17810 3f46f930ce30d24f48baf821d10d72e1 379 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 37 375 3.8E-33 T 26-04-2016 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX RGE_RS17810 3f46f930ce30d24f48baf821d10d72e1 379 PANTHER PTHR38043 1 224 1.3E-18 T 26-04-2016 RGE_RS17810 3f46f930ce30d24f48baf821d10d72e1 379 PANTHER PTHR38043 241 375 1.3E-18 T 26-04-2016 RGE_RS14785 36ee559d3e2023dbfcb58b382bdee9a7 331 Pfam PF06996 Type VI secretion, VasB, ImpH, VC_A0111 19 307 2.5E-63 T 26-04-2016 IPR010732 Type VI secretion, TssG-like RGE_RS14785 36ee559d3e2023dbfcb58b382bdee9a7 331 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 18 307 6.8E-64 T 26-04-2016 IPR010732 Type VI secretion, TssG-like RGE_RS14785 36ee559d3e2023dbfcb58b382bdee9a7 331 PANTHER PTHR35564:SF2 1 324 1.3E-30 T 26-04-2016 RGE_RS14785 36ee559d3e2023dbfcb58b382bdee9a7 331 PANTHER PTHR35564 1 324 1.3E-30 T 26-04-2016 RGE_RS19495 74d9833bb9273f8b3d0b51a0fb847d6a 542 Gene3D G3DSA:2.30.38.10 360 434 2.3E-16 T 26-04-2016 RGE_RS19495 74d9833bb9273f8b3d0b51a0fb847d6a 542 Gene3D G3DSA:3.40.50.980 189 340 7.8E-38 T 26-04-2016 RGE_RS19495 74d9833bb9273f8b3d0b51a0fb847d6a 542 PANTHER PTHR24096 1 538 1.2E-248 T 26-04-2016 RGE_RS19495 74d9833bb9273f8b3d0b51a0fb847d6a 542 PANTHER PTHR24096:SF53 1 538 1.2E-248 T 26-04-2016 RGE_RS19495 74d9833bb9273f8b3d0b51a0fb847d6a 542 Pfam PF00501 AMP-binding enzyme 19 440 5.2E-86 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS19495 74d9833bb9273f8b3d0b51a0fb847d6a 542 Gene3D G3DSA:3.40.50.980 13 188 3.3E-30 T 26-04-2016 RGE_RS19495 74d9833bb9273f8b3d0b51a0fb847d6a 542 Pfam PF13193 AMP-binding enzyme C-terminal domain 450 524 1.8E-14 T 26-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RGE_RS19495 74d9833bb9273f8b3d0b51a0fb847d6a 542 SUPERFAMILY SSF56801 5 536 6.93E-135 T 26-04-2016 RGE_RS19495 74d9833bb9273f8b3d0b51a0fb847d6a 542 ProSitePatterns PS00455 Putative AMP-binding domain signature. 183 194 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS19495 74d9833bb9273f8b3d0b51a0fb847d6a 542 Gene3D G3DSA:3.30.300.30 435 534 3.3E-25 T 26-04-2016 RGE_RS17245 d9ef365cbf3afccc7c0d0afb93f7edce 209 PANTHER PTHR35562 24 208 9.8E-38 T 26-04-2016 RGE_RS17245 d9ef365cbf3afccc7c0d0afb93f7edce 209 Pfam PF01713 Smr domain 128 208 1.7E-23 T 26-04-2016 IPR002625 Smr domain RGE_RS17245 d9ef365cbf3afccc7c0d0afb93f7edce 209 PANTHER PTHR35562:SF2 24 208 9.8E-38 T 26-04-2016 RGE_RS17245 d9ef365cbf3afccc7c0d0afb93f7edce 209 SMART SM00463 125 209 8.6E-13 T 26-04-2016 IPR002625 Smr domain RGE_RS17245 d9ef365cbf3afccc7c0d0afb93f7edce 209 SUPERFAMILY SSF160443 126 208 1.7E-17 T 26-04-2016 IPR002625 Smr domain RGE_RS02570 d4c9a8a7d8ea1661a4df2ea55ef1c66f 149 SUPERFAMILY SSF69118 2 145 2.47E-40 T 26-04-2016 IPR029032 AhpD-like RGE_RS02570 d4c9a8a7d8ea1661a4df2ea55ef1c66f 149 Gene3D G3DSA:1.20.1290.10 2 146 3.0E-45 T 26-04-2016 IPR029032 AhpD-like RGE_RS02570 d4c9a8a7d8ea1661a4df2ea55ef1c66f 149 Pfam PF02627 Carboxymuconolactone decarboxylase family 11 95 6.9E-14 T 26-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RGE_RS02570 d4c9a8a7d8ea1661a4df2ea55ef1c66f 149 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 35 76 2.8E-12 T 26-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RGE_RS19360 30a607f91806835c3adc9c172f63a0b4 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 1.1E-16 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS19360 30a607f91806835c3adc9c172f63a0b4 311 Gene3D G3DSA:3.40.190.10 181 263 1.7E-22 T 26-04-2016 RGE_RS19360 30a607f91806835c3adc9c172f63a0b4 311 Gene3D G3DSA:1.10.10.10 10 89 2.6E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19360 30a607f91806835c3adc9c172f63a0b4 311 SUPERFAMILY SSF53850 93 302 4.89E-46 T 26-04-2016 RGE_RS19360 30a607f91806835c3adc9c172f63a0b4 311 SUPERFAMILY SSF46785 9 116 1.86E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19360 30a607f91806835c3adc9c172f63a0b4 311 Gene3D G3DSA:3.40.190.10 97 180 6.9E-22 T 26-04-2016 RGE_RS19360 30a607f91806835c3adc9c172f63a0b4 311 PANTHER PTHR30537 12 307 2.3E-93 T 26-04-2016 RGE_RS19360 30a607f91806835c3adc9c172f63a0b4 311 Pfam PF03466 LysR substrate binding domain 93 299 5.3E-47 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS16665 5f2158ec0ed1331ccfc291487cd79365 419 Pfam PF01189 16S rRNA methyltransferase RsmB/F 218 415 1.4E-47 T 26-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS16665 5f2158ec0ed1331ccfc291487cd79365 419 PANTHER PTHR22807 114 418 1.2E-81 T 26-04-2016 RGE_RS16665 5f2158ec0ed1331ccfc291487cd79365 419 SUPERFAMILY SSF53335 113 418 2.23E-69 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16665 5f2158ec0ed1331ccfc291487cd79365 419 PANTHER PTHR22807:SF33 114 418 1.2E-81 T 26-04-2016 RGE_RS16665 5f2158ec0ed1331ccfc291487cd79365 419 Gene3D G3DSA:3.30.70.1170 146 203 7.9E-16 T 26-04-2016 RGE_RS16665 5f2158ec0ed1331ccfc291487cd79365 419 Gene3D G3DSA:3.40.50.150 205 418 6.7E-54 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16665 5f2158ec0ed1331ccfc291487cd79365 419 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 224 234 5.3E-28 T 26-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS16665 5f2158ec0ed1331ccfc291487cd79365 419 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 343 359 5.3E-28 T 26-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS16665 5f2158ec0ed1331ccfc291487cd79365 419 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 195 209 5.3E-28 T 26-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS16665 5f2158ec0ed1331ccfc291487cd79365 419 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 401 418 5.3E-28 T 26-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS16665 5f2158ec0ed1331ccfc291487cd79365 419 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 293 305 5.3E-28 T 26-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS23385 e3dc57e0f01b59c6accca5d9c588a724 149 Gene3D G3DSA:3.40.630.30 94 137 5.6E-4 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS01225 5708d06d2b6771c78fb22f2c3750830d 504 ProSitePatterns PS01219 Ammonium transporters signature. 250 275 - T 26-04-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 RGE_RS01225 5708d06d2b6771c78fb22f2c3750830d 504 Pfam PF00909 Ammonium Transporter Family 72 502 2.4E-115 T 26-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RGE_RS01225 5708d06d2b6771c78fb22f2c3750830d 504 TIGRFAM TIGR00836 amt: ammonium transporter 69 502 2.9E-129 T 26-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RGE_RS01225 5708d06d2b6771c78fb22f2c3750830d 504 PANTHER PTHR11730:SF17 41 222 1.7E-176 T 26-04-2016 RGE_RS01225 5708d06d2b6771c78fb22f2c3750830d 504 PANTHER PTHR11730:SF17 241 503 1.7E-176 T 26-04-2016 RGE_RS01225 5708d06d2b6771c78fb22f2c3750830d 504 Gene3D G3DSA:1.10.3430.10 63 483 9.2E-135 T 26-04-2016 IPR029020 Ammonium/urea transporter RGE_RS01225 5708d06d2b6771c78fb22f2c3750830d 504 PANTHER PTHR11730 41 222 1.7E-176 T 26-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RGE_RS01225 5708d06d2b6771c78fb22f2c3750830d 504 PANTHER PTHR11730 241 503 1.7E-176 T 26-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RGE_RS01225 5708d06d2b6771c78fb22f2c3750830d 504 SUPERFAMILY SSF111352 66 483 8.89E-120 T 26-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 TIGRFAM TIGR00232 tktlase_bact: transketolase 9 665 2.9E-271 T 26-04-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 7 340 1.4E-150 T 26-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 SUPERFAMILY SSF52518 6 327 1.71E-115 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 PANTHER PTHR11624:SF1 347 666 0.0 T 26-04-2016 RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 PANTHER PTHR11624:SF1 2 316 0.0 T 26-04-2016 RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 Gene3D G3DSA:3.40.50.970 6 327 2.5E-126 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 Gene3D G3DSA:3.40.50.970 333 537 5.7E-76 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 SUPERFAMILY SSF52922 539 667 2.62E-42 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 Pfam PF02779 Transketolase, pyrimidine binding domain 361 530 8.5E-47 T 26-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 Pfam PF02780 Transketolase, C-terminal domain 545 658 2.4E-15 T 26-04-2016 IPR033248 Transketolase, C-terminal domain RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 PANTHER PTHR11624 347 666 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 PANTHER PTHR11624 2 316 0.0 T 26-04-2016 IPR033247 Transketolase family RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 Gene3D G3DSA:3.40.50.920 543 666 3.6E-45 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 ProSitePatterns PS00801 Transketolase signature 1. 14 34 - T 26-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 SMART SM00861 361 532 2.4E-69 T 26-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RGE_RS17560 8481dbe3cc3f22dc4c15674ba7f8de02 667 SUPERFAMILY SSF52518 357 532 1.03E-65 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 PANTHER PTHR13710 434 486 1.3E-151 T 26-04-2016 RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 PANTHER PTHR13710 12 353 1.3E-151 T 26-04-2016 RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 Pfam PF00271 Helicase conserved C-terminal domain 237 334 1.1E-14 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 Gene3D G3DSA:3.40.50.300 11 200 6.6E-51 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 Pfam PF00270 DEAD/DEAH box helicase 30 189 1.8E-19 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 Gene3D G3DSA:1.10.10.10 441 491 1.1E-11 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 Pfam PF16124 RecQ zinc-binding 441 486 4.4E-9 T 26-04-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 18 356 6.5E-102 T 26-04-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 SMART SM00490 253 334 2.7E-21 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 PANTHER PTHR13710:SF81 434 486 1.3E-151 T 26-04-2016 RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 PANTHER PTHR13710:SF81 12 353 1.3E-151 T 26-04-2016 RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 SUPERFAMILY SSF52540 67 353 5.57E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 Gene3D G3DSA:3.40.50.300 211 348 1.9E-34 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 SMART SM00487 23 219 4.0E-26 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS10885 ba89d88affd42e17a8c53b18ed38df25 569 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 142 151 - T 26-04-2016 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site GO:0003676|GO:0005524|GO:0008026 RGE_RS21845 f89fd5de8b530b1cfda5add30aac7996 103 SMART SM01152 14 88 5.2E-28 T 26-04-2016 IPR003746 Protein of unknown function DUF167 RGE_RS21845 f89fd5de8b530b1cfda5add30aac7996 103 Hamap MF_00634 UPF0235 protein YggU [yggU]. 12 99 17.983 T 26-04-2016 IPR003746 Protein of unknown function DUF167 RGE_RS21845 f89fd5de8b530b1cfda5add30aac7996 103 SUPERFAMILY SSF69786 16 95 1.11E-23 T 26-04-2016 IPR003746 Protein of unknown function DUF167 RGE_RS21845 f89fd5de8b530b1cfda5add30aac7996 103 Gene3D G3DSA:3.30.1200.10 6 94 4.2E-25 T 26-04-2016 IPR003746 Protein of unknown function DUF167 RGE_RS21845 f89fd5de8b530b1cfda5add30aac7996 103 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 17 86 1.4E-21 T 26-04-2016 IPR003746 Protein of unknown function DUF167 RGE_RS02000 b20c7c4ae0d92cbc5a2465801740a1f5 207 PANTHER PTHR33619 32 203 6.1E-27 T 26-04-2016 RGE_RS02000 b20c7c4ae0d92cbc5a2465801740a1f5 207 Gene3D G3DSA:3.30.1950.10 48 116 6.3E-18 T 26-04-2016 RGE_RS02000 b20c7c4ae0d92cbc5a2465801740a1f5 207 Pfam PF02563 Polysaccharide biosynthesis/export protein 39 113 7.3E-20 T 26-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 RGE_RS02000 b20c7c4ae0d92cbc5a2465801740a1f5 207 Pfam PF10531 SLBB domain 124 171 4.1E-7 T 26-04-2016 IPR019554 Soluble ligand binding domain RGE_RS02000 b20c7c4ae0d92cbc5a2465801740a1f5 207 TIGRFAM TIGR03027 pepcterm_export: putative polysaccharide export protein, PEP-CTERM sytem-associated 44 207 5.3E-74 T 26-04-2016 IPR017477 PEP-CTERM, putative polysaccharide export protein RGE_RS02000 b20c7c4ae0d92cbc5a2465801740a1f5 207 Gene3D G3DSA:3.10.560.10 117 204 1.7E-17 T 26-04-2016 RGE_RS00900 152a3ed75121697bbe5b295294cb3e60 462 SUPERFAMILY SSF75304 2 452 1.14E-115 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS00900 152a3ed75121697bbe5b295294cb3e60 462 Pfam PF01425 Amidase 25 442 7.1E-83 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS00900 152a3ed75121697bbe5b295294cb3e60 462 PANTHER PTHR11895 7 461 2.4E-110 T 26-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS00900 152a3ed75121697bbe5b295294cb3e60 462 Gene3D G3DSA:3.90.1300.10 3 453 3.3E-114 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS16810 9550687749e84ced3a74d2226166f797 237 PANTHER PTHR12192 9 189 8.8E-39 T 26-04-2016 IPR006840 ChaC-like protein RGE_RS16810 9550687749e84ced3a74d2226166f797 237 Gene3D G3DSA:3.10.490.10 23 187 3.2E-24 T 26-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like RGE_RS16810 9550687749e84ced3a74d2226166f797 237 SUPERFAMILY SSF110857 25 136 5.36E-9 T 26-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like RGE_RS16810 9550687749e84ced3a74d2226166f797 237 PANTHER PTHR12192:SF9 9 189 8.8E-39 T 26-04-2016 RGE_RS16810 9550687749e84ced3a74d2226166f797 237 Pfam PF04752 ChaC-like protein 25 189 2.4E-39 T 26-04-2016 IPR006840 ChaC-like protein RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 459 631 40.075 T 26-04-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 PANTHER PTHR11055 448 633 4.6E-117 T 26-04-2016 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 80 95 - T 26-04-2016 IPR031157 Tr-type G domain, conserved site RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 SUPERFAMILY SSF52540 17 232 1.2E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 445 627 2.1E-77 T 26-04-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 Gene3D G3DSA:3.40.50.300 11 230 4.6E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 Gene3D G3DSA:2.40.30.10 242 361 3.2E-22 T 26-04-2016 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 Pfam PF00009 Elongation factor Tu GTP binding domain 24 211 6.8E-42 T 26-04-2016 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 PRINTS PR00315 GTP-binding elongation factor signature 123 134 5.8E-13 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 PRINTS PR00315 GTP-binding elongation factor signature 160 169 5.8E-13 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 PRINTS PR00315 GTP-binding elongation factor signature 26 39 5.8E-13 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 PRINTS PR00315 GTP-binding elongation factor signature 87 95 5.8E-13 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 PRINTS PR00315 GTP-binding elongation factor signature 107 117 5.8E-13 T 26-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 SUPERFAMILY SSF50447 241 326 9.15E-23 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 Pfam PF01583 Adenylylsulphate kinase 461 613 7.5E-73 T 26-04-2016 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 SUPERFAMILY SSF50465 329 431 3.93E-34 T 26-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 SUPERFAMILY SSF52540 458 630 8.64E-39 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 16 460 51.879 T 26-04-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 431 1.7E-202 T 26-04-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 RGE_RS15215 ab52a228c2425e80add200eb5b95fcef 634 Gene3D G3DSA:3.40.50.300 439 633 6.0E-85 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS09340 db933cd2e180da4eb4b78a383bc458a4 207 Pfam PF05573 NosL 58 188 5.1E-18 T 26-04-2016 IPR008719 Nitrous oxide reductase accessory protein NosL RGE_RS09340 db933cd2e180da4eb4b78a383bc458a4 207 SUPERFAMILY SSF160387 85 187 3.66E-21 T 26-04-2016 RGE_RS12765 50a915c2f19328721dc96a3e44443f84 455 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 254 269 - T 26-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS12765 50a915c2f19328721dc96a3e44443f84 455 SMART SM01230 118 374 9.3E-114 T 26-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS12765 50a915c2f19328721dc96a3e44443f84 455 SUPERFAMILY SSF54368 8 116 4.71E-21 T 26-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS12765 50a915c2f19328721dc96a3e44443f84 455 Pfam PF00120 Glutamine synthetase, catalytic domain 120 450 2.8E-106 T 26-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS12765 50a915c2f19328721dc96a3e44443f84 455 PANTHER PTHR20852 1 455 9.3E-200 T 26-04-2016 RGE_RS12765 50a915c2f19328721dc96a3e44443f84 455 SUPERFAMILY SSF55931 118 452 6.77E-112 T 26-04-2016 RGE_RS12765 50a915c2f19328721dc96a3e44443f84 455 PANTHER PTHR20852:SF63 1 455 9.3E-200 T 26-04-2016 RGE_RS12765 50a915c2f19328721dc96a3e44443f84 455 Gene3D G3DSA:3.30.590.10 122 441 1.9E-99 T 26-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RGE_RS12765 50a915c2f19328721dc96a3e44443f84 455 Gene3D G3DSA:3.10.20.70 11 121 2.9E-17 T 26-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RGE_RS11410 23969419e125a27e6380a87862a5481f 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 6.1E-15 T 26-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RGE_RS11410 23969419e125a27e6380a87862a5481f 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 6.1E-15 T 26-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RGE_RS11410 23969419e125a27e6380a87862a5481f 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 6.1E-15 T 26-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RGE_RS11410 23969419e125a27e6380a87862a5481f 107 PANTHER PTHR11938:SF101 1 82 1.9E-40 T 26-04-2016 RGE_RS11410 23969419e125a27e6380a87862a5481f 107 Pfam PF11953 Domain of unknown function (DUF3470) 67 107 1.8E-20 T 26-04-2016 IPR022569 Ferredoxin, C-terminal RGE_RS11410 23969419e125a27e6380a87862a5481f 107 PANTHER PTHR11938 1 82 1.9E-40 T 26-04-2016 RGE_RS11410 23969419e125a27e6380a87862a5481f 107 Gene3D G3DSA:3.30.70.20 5 101 1.7E-20 T 26-04-2016 RGE_RS11410 23969419e125a27e6380a87862a5481f 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS11410 23969419e125a27e6380a87862a5481f 107 Pfam PF00037 4Fe-4S binding domain 34 55 2.2E-6 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS11410 23969419e125a27e6380a87862a5481f 107 SUPERFAMILY SSF54862 1 100 3.96E-24 T 26-04-2016 RGE_RS11410 23969419e125a27e6380a87862a5481f 107 Pfam PF12800 4Fe-4S binding domain 7 23 0.061 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS06970 1f8a96a865a1f4a535f764a246a82727 495 SUPERFAMILY SSF53474 74 481 8.02E-58 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS06970 1f8a96a865a1f4a535f764a246a82727 495 Pfam PF00450 Serine carboxypeptidase 84 213 1.4E-12 T 26-04-2016 IPR001563 Peptidase S10, serine carboxypeptidase GO:0004185|GO:0006508 RGE_RS06970 1f8a96a865a1f4a535f764a246a82727 495 Gene3D G3DSA:3.40.50.1820 82 461 4.9E-43 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS17850 2c6aa26758fe3eb2b5766e0b49b815b1 155 Gene3D G3DSA:1.20.120.50 1 127 4.7E-21 T 26-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 RGE_RS17850 2c6aa26758fe3eb2b5766e0b49b815b1 155 Pfam PF01814 Hemerythrin HHE cation binding domain 17 121 8.2E-8 T 26-04-2016 IPR012312 Haemerythrin-like RGE_RS17850 2c6aa26758fe3eb2b5766e0b49b815b1 155 ProSitePatterns PS00550 Hemerythrin family signature. 56 79 - T 26-04-2016 IPR016131 Haemerythrin, iron-binding site GO:0046872 RGE_RS17850 2c6aa26758fe3eb2b5766e0b49b815b1 155 PANTHER PTHR37164 2 143 6.1E-14 T 26-04-2016 RGE_RS17850 2c6aa26758fe3eb2b5766e0b49b815b1 155 SUPERFAMILY SSF47188 2 127 5.36E-22 T 26-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 RGE_RS17850 2c6aa26758fe3eb2b5766e0b49b815b1 155 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 5 127 3.8E-22 T 26-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 RGE_RS16910 fdf1e022874a7cebf05959538335533f 801 PANTHER PTHR30619:SF2 11 797 1.9E-144 T 26-04-2016 RGE_RS16910 fdf1e022874a7cebf05959538335533f 801 Pfam PF03772 Competence protein 237 517 1.7E-57 T 26-04-2016 IPR004477 ComEC/Rec2-related protein RGE_RS16910 fdf1e022874a7cebf05959538335533f 801 Gene3D G3DSA:3.60.15.10 536 759 2.0E-30 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS16910 fdf1e022874a7cebf05959538335533f 801 Pfam PF00753 Metallo-beta-lactamase superfamily 549 740 3.0E-8 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS16910 fdf1e022874a7cebf05959538335533f 801 Pfam PF13567 Domain of unknown function (DUF4131) 37 196 3.0E-22 T 26-04-2016 IPR025405 Domain of unknown function DUF4131 RGE_RS16910 fdf1e022874a7cebf05959538335533f 801 SMART SM00849 552 744 3.5E-12 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS16910 fdf1e022874a7cebf05959538335533f 801 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 136 771 1.2E-92 T 26-04-2016 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 RGE_RS16910 fdf1e022874a7cebf05959538335533f 801 SUPERFAMILY SSF56281 541 783 1.08E-41 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS16910 fdf1e022874a7cebf05959538335533f 801 PANTHER PTHR30619 11 797 1.9E-144 T 26-04-2016 RGE_RS16910 fdf1e022874a7cebf05959538335533f 801 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 258 454 4.0E-23 T 26-04-2016 IPR004477 ComEC/Rec2-related protein RGE_RS16630 9e4be9037ee60c784fa9a451acf8ca04 202 Gene3D G3DSA:2.50.20.10 20 202 6.7E-58 T 26-04-2016 RGE_RS16630 9e4be9037ee60c784fa9a451acf8ca04 202 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 6 202 28.09 T 26-04-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 RGE_RS16630 9e4be9037ee60c784fa9a451acf8ca04 202 SUPERFAMILY SSF89392 20 201 1.33E-45 T 26-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX RGE_RS16630 9e4be9037ee60c784fa9a451acf8ca04 202 PANTHER PTHR35869 4 202 2.7E-42 T 26-04-2016 RGE_RS16630 9e4be9037ee60c784fa9a451acf8ca04 202 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 31 192 4.7E-43 T 26-04-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RGE_RS16630 9e4be9037ee60c784fa9a451acf8ca04 202 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 1 200 6.6E-21 T 26-04-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 RGE_RS10305 c7a349b202308a477ac10a1516b4bcb2 482 Gene3D G3DSA:3.30.70.20 218 306 6.7E-9 T 26-04-2016 RGE_RS10305 c7a349b202308a477ac10a1516b4bcb2 482 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 40 446 1.7E-143 T 26-04-2016 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021 RGE_RS10305 c7a349b202308a477ac10a1516b4bcb2 482 Gene3D G3DSA:2.60.40.10 359 482 1.3E-25 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS10305 c7a349b202308a477ac10a1516b4bcb2 482 PANTHER PTHR24960:SF45 24 398 2.0E-120 T 26-04-2016 RGE_RS10305 c7a349b202308a477ac10a1516b4bcb2 482 Pfam PF13746 4Fe-4S dicluster domain 218 323 4.4E-40 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS10305 c7a349b202308a477ac10a1516b4bcb2 482 SUPERFAMILY SSF54862 172 363 1.67E-28 T 26-04-2016 RGE_RS10305 c7a349b202308a477ac10a1516b4bcb2 482 SUPERFAMILY SSF54862 104 126 1.67E-28 T 26-04-2016 RGE_RS10305 c7a349b202308a477ac10a1516b4bcb2 482 PANTHER PTHR24960 24 398 2.0E-120 T 26-04-2016 RGE_RS10305 c7a349b202308a477ac10a1516b4bcb2 482 Pfam PF12801 4Fe-4S binding domain 95 136 1.2E-9 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS10305 c7a349b202308a477ac10a1516b4bcb2 482 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 359 481 5.6E-24 T 26-04-2016 IPR032879 FixG, C-terminal immunoglobulin-like domain RGE_RS10305 c7a349b202308a477ac10a1516b4bcb2 482 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 271 282 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS02380 8ecf7fc222612780729fce741b285278 203 Pfam PF13590 Domain of unknown function (DUF4136) 30 185 1.1E-13 T 26-04-2016 IPR025411 Domain of unknown function DUF4136 RGE_RS19640 fd06f384f847d0b056d5b699403093f3 334 SUPERFAMILY SSF54211 16 163 1.29E-15 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS19640 fd06f384f847d0b056d5b699403093f3 334 PIRSF PIRSF004884 11 334 2.9E-68 T 26-04-2016 IPR004422 GHMP kinase group 1 MetaCyc: PWY-6148|UniPathway: UPA00065 RGE_RS19640 fd06f384f847d0b056d5b699403093f3 334 Pfam PF08544 GHMP kinases C terminal 234 313 1.3E-5 T 26-04-2016 IPR013750 GHMP kinase, C-terminal domain RGE_RS19640 fd06f384f847d0b056d5b699403093f3 334 TIGRFAM TIGR00144 beta_RFAP_syn: beta-ribofuranosylaminobenzene 5'-phosphate synthase family 17 300 1.8E-39 T 26-04-2016 IPR004422 GHMP kinase group 1 MetaCyc: PWY-6148|UniPathway: UPA00065 RGE_RS19640 fd06f384f847d0b056d5b699403093f3 334 Gene3D G3DSA:3.30.230.10 89 156 2.1E-5 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS00270 0540aa00f29f37c9473b6c10bb99d7f5 650 PANTHER PTHR11806:SF0 1 639 0.0 T 26-04-2016 RGE_RS00270 0540aa00f29f37c9473b6c10bb99d7f5 650 PANTHER PTHR11806 1 639 0.0 T 26-04-2016 RGE_RS00270 0540aa00f29f37c9473b6c10bb99d7f5 650 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 640 42.59 T 26-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 RGE_RS00270 0540aa00f29f37c9473b6c10bb99d7f5 650 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 369 392 - T 26-04-2016 IPR020595 MnmG-related, conserved site RGE_RS00270 0540aa00f29f37c9473b6c10bb99d7f5 650 Pfam PF13932 GidA associated domain 403 632 1.0E-71 T 26-04-2016 IPR026904 GidA associated domain 3 RGE_RS00270 0540aa00f29f37c9473b6c10bb99d7f5 650 Gene3D G3DSA:3.50.50.60 7 221 2.6E-52 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS00270 0540aa00f29f37c9473b6c10bb99d7f5 650 SUPERFAMILY SSF51905 97 262 2.74E-48 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS00270 0540aa00f29f37c9473b6c10bb99d7f5 650 SUPERFAMILY SSF51905 7 66 2.74E-48 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS00270 0540aa00f29f37c9473b6c10bb99d7f5 650 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 274 288 - T 26-04-2016 IPR020595 MnmG-related, conserved site RGE_RS00270 0540aa00f29f37c9473b6c10bb99d7f5 650 Pfam PF01134 Glucose inhibited division protein A 8 400 1.4E-165 T 26-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 RGE_RS00270 0540aa00f29f37c9473b6c10bb99d7f5 650 SMART SM01228 562 633 1.2E-44 T 26-04-2016 RGE_RS00270 0540aa00f29f37c9473b6c10bb99d7f5 650 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 637 2.2E-265 T 26-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 SMART SM00421 146 203 1.1E-14 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 PANTHER PTHR26402:SF458 2 209 8.5E-57 T 26-04-2016 RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 Gene3D G3DSA:3.40.50.2300 1 120 4.4E-28 T 26-04-2016 RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 6.6E-17 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 SMART SM00448 2 115 1.0E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 SUPERFAMILY SSF46894 134 209 7.48E-19 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 PANTHER PTHR26402 2 209 8.5E-57 T 26-04-2016 RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 Pfam PF00072 Response regulator receiver domain 4 115 7.4E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 Gene3D G3DSA:1.10.10.10 121 209 1.2E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 SUPERFAMILY SSF52172 1 134 1.57E-28 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 3.7E-10 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 3.7E-10 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS19195 dcad7ed664b6111a293bc19fe1d2eaba 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 3.7E-10 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS15965 e30bb51163d60593c5c5e432e4755bbe 264 Pfam PF00588 SpoU rRNA Methylase family 114 254 1.0E-38 T 26-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RGE_RS15965 e30bb51163d60593c5c5e432e4755bbe 264 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 24 97 8.2E-14 T 26-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RGE_RS15965 e30bb51163d60593c5c5e432e4755bbe 264 SUPERFAMILY SSF55315 21 96 4.83E-16 T 26-04-2016 IPR029064 50S ribosomal protein L30e-like RGE_RS15965 e30bb51163d60593c5c5e432e4755bbe 264 PANTHER PTHR12029 23 260 2.7E-65 T 26-04-2016 RGE_RS15965 e30bb51163d60593c5c5e432e4755bbe 264 Gene3D G3DSA:3.30.1330.30 20 95 1.8E-19 T 26-04-2016 IPR029064 50S ribosomal protein L30e-like RGE_RS15965 e30bb51163d60593c5c5e432e4755bbe 264 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 22 260 5.7E-69 T 26-04-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 RGE_RS15965 e30bb51163d60593c5c5e432e4755bbe 264 SUPERFAMILY SSF75217 87 261 3.92E-48 T 26-04-2016 IPR029028 Alpha/beta knot methyltransferases RGE_RS15965 e30bb51163d60593c5c5e432e4755bbe 264 SMART SM00967 23 99 6.3E-14 T 26-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RGE_RS15965 e30bb51163d60593c5c5e432e4755bbe 264 Gene3D G3DSA:3.40.1280.10 110 261 1.4E-52 T 26-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RGE_RS15965 e30bb51163d60593c5c5e432e4755bbe 264 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 21 261 41.932 T 26-04-2016 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB RGE_RS06050 f6f78fb8d8a6e780ec9f5a3989a1fc4e 723 SUPERFAMILY SSF51703 11 555 4.51E-227 T 26-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 RGE_RS06050 f6f78fb8d8a6e780ec9f5a3989a1fc4e 723 ProSitePatterns PS00544 Methylmalonyl-CoA mutase signature. 382 407 - T 26-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 RGE_RS06050 f6f78fb8d8a6e780ec9f5a3989a1fc4e 723 Pfam PF02310 B12 binding domain 595 704 1.2E-15 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS06050 f6f78fb8d8a6e780ec9f5a3989a1fc4e 723 Gene3D G3DSA:3.40.50.280 560 720 1.6E-69 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS06050 f6f78fb8d8a6e780ec9f5a3989a1fc4e 723 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 592 721 9.5E-60 T 26-04-2016 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 RGE_RS06050 f6f78fb8d8a6e780ec9f5a3989a1fc4e 723 PANTHER PTHR23408:SF1 19 699 0.0 T 26-04-2016 RGE_RS06050 f6f78fb8d8a6e780ec9f5a3989a1fc4e 723 Gene3D G3DSA:3.20.20.240 39 505 8.6E-213 T 26-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 RGE_RS06050 f6f78fb8d8a6e780ec9f5a3989a1fc4e 723 SUPERFAMILY SSF52242 559 720 9.55E-57 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS06050 f6f78fb8d8a6e780ec9f5a3989a1fc4e 723 Pfam PF01642 Methylmalonyl-CoA mutase 40 553 3.1E-241 T 26-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 RGE_RS06050 f6f78fb8d8a6e780ec9f5a3989a1fc4e 723 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 39 560 1.4E-268 T 26-04-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 RGE_RS06050 f6f78fb8d8a6e780ec9f5a3989a1fc4e 723 PANTHER PTHR23408 19 699 0.0 T 26-04-2016 RGE_RS06235 b2648df0270f8d767b8c79ca703a68f2 122 PANTHER PTHR35006 1 122 1.9E-39 T 26-04-2016 RGE_RS06235 b2648df0270f8d767b8c79ca703a68f2 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 115 1.7E-4 T 26-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RGE_RS06235 b2648df0270f8d767b8c79ca703a68f2 122 SUPERFAMILY SSF54593 2 121 4.4E-22 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS06235 b2648df0270f8d767b8c79ca703a68f2 122 Gene3D G3DSA:3.10.180.10 1 118 1.7E-30 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS22145 e3d80c58dbe84b310424700507cdc5dd 350 PANTHER PTHR33540:SF1 23 266 8.7E-72 T 26-04-2016 RGE_RS22145 e3d80c58dbe84b310424700507cdc5dd 350 Gene3D G3DSA:3.30.200.20 18 103 4.3E-30 T 26-04-2016 RGE_RS22145 e3d80c58dbe84b310424700507cdc5dd 350 PANTHER PTHR33540 23 266 8.7E-72 T 26-04-2016 RGE_RS22145 e3d80c58dbe84b310424700507cdc5dd 350 SUPERFAMILY SSF56112 17 260 2.33E-40 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS22145 e3d80c58dbe84b310424700507cdc5dd 350 Pfam PF01636 Phosphotransferase enzyme family 36 259 6.4E-27 T 26-04-2016 IPR002575 Aminoglycoside phosphotransferase RGE_RS22145 e3d80c58dbe84b310424700507cdc5dd 350 Gene3D G3DSA:3.90.1200.10 104 270 1.6E-43 T 26-04-2016 RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PANTHER PTHR24322 10 134 5.0E-61 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PANTHER PTHR24322 150 182 5.0E-61 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 186 3.2E-5 T 26-04-2016 RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 240 6.2E-66 T 26-04-2016 RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 Gene3D G3DSA:3.40.50.720 4 242 5.1E-88 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 2.2E-14 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 2.2E-14 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 2.2E-14 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PANTHER PTHR24322:SF635 10 134 5.0E-61 T 26-04-2016 RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PANTHER PTHR24322:SF635 150 182 5.0E-61 T 26-04-2016 RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 9.1E-49 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 9.1E-49 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 9.1E-49 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 9.1E-49 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 204 224 9.1E-49 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 9.1E-49 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 241 3.2E-99 T 26-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RGE_RS20075 5f7a84071534f9a6386fbbfb835fa59d 243 SUPERFAMILY SSF51735 6 242 1.13E-83 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05815 b03b37a5834674ba2e4a1795177b8ebd 147 Pfam PF00582 Universal stress protein family 1 146 1.5E-28 T 26-04-2016 IPR006016 UspA GO:0006950 RGE_RS05815 b03b37a5834674ba2e4a1795177b8ebd 147 PANTHER PTHR31964 1 147 4.2E-29 T 26-04-2016 RGE_RS05815 b03b37a5834674ba2e4a1795177b8ebd 147 PANTHER PTHR31964:SF26 1 147 4.2E-29 T 26-04-2016 RGE_RS05815 b03b37a5834674ba2e4a1795177b8ebd 147 SUPERFAMILY SSF52402 1 147 1.84E-34 T 26-04-2016 RGE_RS05815 b03b37a5834674ba2e4a1795177b8ebd 147 Gene3D G3DSA:3.40.50.620 1 146 1.3E-35 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS05815 b03b37a5834674ba2e4a1795177b8ebd 147 PRINTS PR01438 Universal stress protein signature 107 119 7.3E-16 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS05815 b03b37a5834674ba2e4a1795177b8ebd 147 PRINTS PR01438 Universal stress protein signature 2 20 7.3E-16 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS05815 b03b37a5834674ba2e4a1795177b8ebd 147 PRINTS PR01438 Universal stress protein signature 125 147 7.3E-16 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS06570 1f4821e2847facc89a66ae4e83e01acf 222 Pfam PF12710 haloacid dehalogenase-like hydrolase 5 192 4.0E-36 T 26-04-2016 RGE_RS06570 1f4821e2847facc89a66ae4e83e01acf 222 PANTHER PTHR10000:SF10 1 215 2.0E-42 T 26-04-2016 RGE_RS06570 1f4821e2847facc89a66ae4e83e01acf 222 SUPERFAMILY SSF56784 4 215 2.8E-31 T 26-04-2016 IPR023214 HAD-like domain RGE_RS06570 1f4821e2847facc89a66ae4e83e01acf 222 Gene3D G3DSA:3.40.50.1000 81 220 6.9E-45 T 26-04-2016 IPR023214 HAD-like domain RGE_RS06570 1f4821e2847facc89a66ae4e83e01acf 222 Gene3D G3DSA:1.20.1440.100 15 80 8.5E-26 T 26-04-2016 RGE_RS06570 1f4821e2847facc89a66ae4e83e01acf 222 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 4 202 8.9E-36 T 26-04-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial RGE_RS06570 1f4821e2847facc89a66ae4e83e01acf 222 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 4 194 4.5E-21 T 26-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 RGE_RS06570 1f4821e2847facc89a66ae4e83e01acf 222 PANTHER PTHR10000 1 215 2.0E-42 T 26-04-2016 RGE_RS15175 298abdcef5e8ffedff79b4b0b13da210 828 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 527 794 2.6E-17 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS15175 298abdcef5e8ffedff79b4b0b13da210 828 PANTHER PTHR32347 491 828 1.3E-47 T 26-04-2016 RGE_RS15175 298abdcef5e8ffedff79b4b0b13da210 828 PANTHER PTHR32347:SF12 491 828 1.3E-47 T 26-04-2016 RGE_RS15175 298abdcef5e8ffedff79b4b0b13da210 828 Pfam PF00529 HlyD membrane-fusion protein of T1SS 433 800 3.2E-7 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS00615 ee9502d204b8e2146f8cba4d96d1517a 113 Pfam PF07883 Cupin domain 41 109 7.6E-10 T 26-04-2016 IPR013096 Cupin 2, conserved barrel RGE_RS00615 ee9502d204b8e2146f8cba4d96d1517a 113 Gene3D G3DSA:2.60.120.10 20 112 6.4E-15 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS00615 ee9502d204b8e2146f8cba4d96d1517a 113 SUPERFAMILY SSF51182 12 112 7.32E-16 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS05265 a5a72f7ad1745aa0a87ece1c6e73c687 479 Pfam PF13440 Polysaccharide biosynthesis protein 33 325 2.3E-64 T 26-04-2016 RGE_RS05265 a5a72f7ad1745aa0a87ece1c6e73c687 479 PANTHER PTHR30250:SF0 1 479 1.5E-52 T 26-04-2016 RGE_RS05265 a5a72f7ad1745aa0a87ece1c6e73c687 479 PANTHER PTHR30250 1 479 1.5E-52 T 26-04-2016 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 Gene3D G3DSA:1.10.3370.10 7 432 8.9E-166 T 26-04-2016 IPR023201 SecY subunit domain RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 PANTHER PTHR10906 5 434 2.5E-215 T 26-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 ProSitePatterns PS00755 Protein secY signature 1. 74 93 - T 26-04-2016 IPR030659 SecY conserved site RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 18 424 2.8E-131 T 26-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 SUPERFAMILY SSF103491 6 419 3.14E-130 T 26-04-2016 IPR023201 SecY subunit domain RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 PIRSF PIRSF004557 1 435 9.1E-122 T 26-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 Hamap MF_01465 Protein translocase subunit SecY [secY]. 8 428 29.92 T 26-04-2016 IPR026593 Protein translocase subunit SecY RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 PANTHER PTHR10906:SF2 5 434 2.5E-215 T 26-04-2016 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 ProSitePatterns PS00756 Protein secY signature 2. 168 185 - T 26-04-2016 IPR030659 SecY conserved site RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 Pfam PF00344 SecY translocase 74 411 1.3E-117 T 26-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 8.9E-94 T 26-04-2016 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 PRINTS PR00303 Preprotein translocase SecY subunit signature 73 93 8.9E-94 T 26-04-2016 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 PRINTS PR00303 Preprotein translocase SecY subunit signature 397 415 8.9E-94 T 26-04-2016 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 8.9E-94 T 26-04-2016 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 8.9E-94 T 26-04-2016 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 PRINTS PR00303 Preprotein translocase SecY subunit signature 310 332 8.9E-94 T 26-04-2016 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 PRINTS PR00303 Preprotein translocase SecY subunit signature 365 383 8.9E-94 T 26-04-2016 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 PRINTS PR00303 Preprotein translocase SecY subunit signature 114 137 8.9E-94 T 26-04-2016 RGE_RS01715 39274d8ad8556644c097dcaff1688097 436 PRINTS PR00303 Preprotein translocase SecY subunit signature 21 39 8.9E-94 T 26-04-2016 RGE_RS19170 8d57d49b72cdff2bc7d09073dac1442a 303 Pfam PF07728 AAA domain (dynein-related subfamily) 41 193 2.0E-12 T 26-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RGE_RS19170 8d57d49b72cdff2bc7d09073dac1442a 303 SUPERFAMILY SSF52540 114 275 3.13E-34 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19170 8d57d49b72cdff2bc7d09073dac1442a 303 SUPERFAMILY SSF52540 29 79 3.13E-34 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19170 8d57d49b72cdff2bc7d09073dac1442a 303 SMART SM00382 37 237 4.7E-9 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS19170 8d57d49b72cdff2bc7d09073dac1442a 303 PANTHER PTHR22908:SF67 7 297 4.1E-96 T 26-04-2016 RGE_RS19170 8d57d49b72cdff2bc7d09073dac1442a 303 PANTHER PTHR22908 7 297 4.1E-96 T 26-04-2016 RGE_RS19170 8d57d49b72cdff2bc7d09073dac1442a 303 Gene3D G3DSA:3.40.50.300 37 219 6.2E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 391 55.997 T 26-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 5 101 2.6E-40 T 26-04-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 Gene3D G3DSA:3.30.300.10 252 391 2.2E-68 T 26-04-2016 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 SUPERFAMILY SSF55973 4 110 2.16E-45 T 26-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 SUPERFAMILY SSF55973 113 240 1.22E-47 T 26-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 119 129 - T 26-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 Pfam PF02772 S-adenosylmethionine synthetase, central domain 118 239 1.6E-44 T 26-04-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 SUPERFAMILY SSF55973 241 391 2.75E-67 T 26-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 241 380 4.9E-68 T 26-04-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 267 275 - T 26-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 390 3.5E-178 T 26-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 PANTHER PTHR11964 5 386 2.3E-251 T 26-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 Gene3D G3DSA:3.30.300.10 12 138 3.3E-46 T 26-04-2016 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 Gene3D G3DSA:3.30.300.10 139 241 2.0E-39 T 26-04-2016 RGE_RS02515 ae21157ee277abeb2619bbf03fe91fd1 393 PIRSF PIRSF000497 1 392 5.5E-168 T 26-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RGE_RS05770 f8f5ea675f298ba245ae0e1aa1560bc8 363 Gene3D G3DSA:1.25.10.10 177 226 1.3E-4 T 26-04-2016 IPR011989 Armadillo-like helical RGE_RS05770 f8f5ea675f298ba245ae0e1aa1560bc8 363 PANTHER PTHR39167 1 361 4.3E-81 T 26-04-2016 RGE_RS05770 f8f5ea675f298ba245ae0e1aa1560bc8 363 SUPERFAMILY SSF48371 44 238 3.3E-39 T 26-04-2016 IPR016024 Armadillo-type fold GO:0005488 RGE_RS05770 f8f5ea675f298ba245ae0e1aa1560bc8 363 Pfam PF08713 DNA alkylation repair enzyme 121 234 3.3E-5 T 26-04-2016 IPR014825 DNA alkylation repair enzyme RGE_RS05090 a43a6db5de0445c3b43951ecb8a32f31 78 PANTHER PTHR33162 1 52 1.4E-14 T 26-04-2016 RGE_RS05090 a43a6db5de0445c3b43951ecb8a32f31 78 Pfam PF02416 mttA/Hcf106 family 4 53 6.8E-16 T 26-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RGE_RS05090 a43a6db5de0445c3b43951ecb8a32f31 78 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 77 23.015 T 26-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RGE_RS05090 a43a6db5de0445c3b43951ecb8a32f31 78 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 46 4.3E-22 T 26-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RGE_RS02640 e0af1d30298709ec849d1f1d59e8d56e 195 PANTHER PTHR30543 1 195 1.7E-35 T 26-04-2016 RGE_RS02640 e0af1d30298709ec849d1f1d59e8d56e 195 Pfam PF03358 NADPH-dependent FMN reductase 4 146 6.0E-24 T 26-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RGE_RS02640 e0af1d30298709ec849d1f1d59e8d56e 195 SUPERFAMILY SSF52218 3 156 9.88E-31 T 26-04-2016 IPR029039 Flavoprotein-like domain RGE_RS02640 e0af1d30298709ec849d1f1d59e8d56e 195 PANTHER PTHR30543:SF1 1 195 1.7E-35 T 26-04-2016 RGE_RS02640 e0af1d30298709ec849d1f1d59e8d56e 195 Gene3D G3DSA:3.40.50.360 2 190 5.6E-38 T 26-04-2016 IPR029039 Flavoprotein-like domain RGE_RS08225 fb6e3ff944abd43b2d6f88383ce9617c 117 PANTHER PTHR38766 7 117 3.0E-12 T 26-04-2016 RGE_RS08225 fb6e3ff944abd43b2d6f88383ce9617c 117 Pfam PF04347 Flagellar biosynthesis protein, FliO 25 108 1.9E-19 T 26-04-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 RGE_RS08225 fb6e3ff944abd43b2d6f88383ce9617c 117 PANTHER PTHR38766:SF1 7 117 3.0E-12 T 26-04-2016 RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 SUPERFAMILY SSF69255 389 493 6.8E-19 T 26-04-2016 RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 Gene3D G3DSA:2.40.50.230 396 493 1.7E-22 T 26-04-2016 IPR006531 Gp5 N-terminal RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 PANTHER PTHR32305 16 183 5.6E-29 T 26-04-2016 RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 PANTHER PTHR32305 200 502 5.6E-29 T 26-04-2016 RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 PANTHER PTHR32305:SF7 16 183 5.6E-29 T 26-04-2016 RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 PANTHER PTHR32305:SF7 200 502 5.6E-29 T 26-04-2016 RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 Gene3D G3DSA:3.55.50.10 105 205 2.9E-20 T 26-04-2016 RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 SUPERFAMILY SSF69279 281 393 8.33E-10 T 26-04-2016 RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 680 820 1.3E-27 T 26-04-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 Pfam PF05954 Phage late control gene D protein (GPD) 38 349 8.8E-56 T 26-04-2016 RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 19 503 2.1E-70 T 26-04-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 32 536 1.1E-58 T 26-04-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 524 625 8.1E-21 T 26-04-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain RGE_RS14735 2a0554d2a8ab4bc2f75d8a4e36e146bb 919 SUPERFAMILY SSF69279 19 203 7.94E-33 T 26-04-2016 RGE_RS20715 5944afa5aa24489e3346d198c52e3c80 200 Pfam PF01464 Transglycosylase SLT domain 92 181 2.6E-14 T 26-04-2016 IPR008258 Transglycosylase SLT domain 1 RGE_RS20715 5944afa5aa24489e3346d198c52e3c80 200 SUPERFAMILY SSF53955 83 186 2.64E-27 T 26-04-2016 IPR023346 Lysozyme-like domain RGE_RS20715 5944afa5aa24489e3346d198c52e3c80 200 PANTHER PTHR21666 67 182 8.8E-16 T 26-04-2016 RGE_RS20715 5944afa5aa24489e3346d198c52e3c80 200 Gene3D G3DSA:1.10.530.10 83 182 1.3E-22 T 26-04-2016 RGE_RS16720 3951295d5aa2642bff27469dc07b8d66 358 SUPERFAMILY SSF110296 2 343 6.67E-54 T 26-04-2016 RGE_RS16720 3951295d5aa2642bff27469dc07b8d66 358 Gene3D G3DSA:2.130.10.10 2 354 1.1E-70 T 26-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RGE_RS14230 df82b11316d8461c588267521b85e05d 349 PANTHER PTHR12725:SF80 62 215 2.6E-20 T 26-04-2016 RGE_RS14230 df82b11316d8461c588267521b85e05d 349 PANTHER PTHR12725 62 215 2.6E-20 T 26-04-2016 RGE_RS14230 df82b11316d8461c588267521b85e05d 349 Gene3D G3DSA:3.90.1200.10 110 317 4.0E-30 T 26-04-2016 RGE_RS14230 df82b11316d8461c588267521b85e05d 349 SUPERFAMILY SSF56112 7 345 1.36E-61 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS14230 df82b11316d8461c588267521b85e05d 349 Pfam PF01636 Phosphotransferase enzyme family 29 281 1.5E-54 T 26-04-2016 IPR002575 Aminoglycoside phosphotransferase RGE_RS10090 c17adfff3bd57871f7fd14a941a6dd2b 194 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 2 188 35.517 T 26-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RGE_RS10090 c17adfff3bd57871f7fd14a941a6dd2b 194 PIRSF PIRSF001296 1 192 1.1E-72 T 26-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RGE_RS10090 c17adfff3bd57871f7fd14a941a6dd2b 194 PANTHER PTHR30042 1 193 3.4E-90 T 26-04-2016 RGE_RS10090 c17adfff3bd57871f7fd14a941a6dd2b 194 PANTHER PTHR30042:SF2 1 193 3.4E-90 T 26-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RGE_RS10090 c17adfff3bd57871f7fd14a941a6dd2b 194 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 4 188 5.8E-70 T 26-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RGE_RS10090 c17adfff3bd57871f7fd14a941a6dd2b 194 Pfam PF02669 K+-transporting ATPase, c chain 6 186 2.1E-72 T 26-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RGE_RS01870 b74230322a994df23fa24e012a73d777 72 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 18 51 3.5E-7 T 26-04-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 RGE_RS01115 d8c263a1d2466c9ca404070a43900dc4 87 ProSitePatterns PS00605 ATP synthase c subunit signature. 38 59 - T 26-04-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site RGE_RS01115 d8c263a1d2466c9ca404070a43900dc4 87 Gene3D G3DSA:1.20.20.10 3 77 7.4E-32 T 26-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RGE_RS01115 d8c263a1d2466c9ca404070a43900dc4 87 PRINTS PR00124 ATP synthase C subunit signature 10 29 5.4E-6 T 26-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RGE_RS01115 d8c263a1d2466c9ca404070a43900dc4 87 PRINTS PR00124 ATP synthase C subunit signature 31 46 5.4E-6 T 26-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RGE_RS01115 d8c263a1d2466c9ca404070a43900dc4 87 Pfam PF00137 ATP synthase subunit C 9 70 6.2E-12 T 26-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RGE_RS01115 d8c263a1d2466c9ca404070a43900dc4 87 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 19 73 8.7E-22 T 26-04-2016 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RGE_RS01115 d8c263a1d2466c9ca404070a43900dc4 87 Hamap MF_01396 ATP synthase subunit c [atpH]. 7 75 13.671 T 26-04-2016 RGE_RS01115 d8c263a1d2466c9ca404070a43900dc4 87 SUPERFAMILY SSF81333 4 76 2.09E-18 T 26-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RGE_RS02420 5db7d3f0d9e09588dab874a666460fa7 318 PANTHER PTHR12126 2 299 9.7E-75 T 26-04-2016 RGE_RS02420 5db7d3f0d9e09588dab874a666460fa7 318 Pfam PF13460 NAD(P)H-binding 8 201 1.6E-19 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS02420 5db7d3f0d9e09588dab874a666460fa7 318 SUPERFAMILY SSF51735 1 260 9.15E-56 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS02420 5db7d3f0d9e09588dab874a666460fa7 318 Gene3D G3DSA:3.40.50.720 1 227 2.9E-53 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05305 050a3ae26ad3d870f4d80d2a41cbd0c1 262 PANTHER PTHR34136 5 260 1.3E-82 T 26-04-2016 RGE_RS05305 050a3ae26ad3d870f4d80d2a41cbd0c1 262 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 66 242 1.7E-54 T 26-04-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 RGE_RS05305 050a3ae26ad3d870f4d80d2a41cbd0c1 262 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 70 239 5.3E-62 T 26-04-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 RGE_RS01830 a46e6e4fdd55b19f9a2f7ee2303df45a 257 Pfam PF00563 EAL domain 26 242 4.1E-48 T 26-04-2016 IPR001633 EAL domain RGE_RS01830 a46e6e4fdd55b19f9a2f7ee2303df45a 257 PANTHER PTHR33121:SF15 28 247 1.2E-70 T 26-04-2016 RGE_RS01830 a46e6e4fdd55b19f9a2f7ee2303df45a 257 PANTHER PTHR33121 28 247 1.2E-70 T 26-04-2016 RGE_RS01830 a46e6e4fdd55b19f9a2f7ee2303df45a 257 SMART SM00052 11 247 2.5E-30 T 26-04-2016 IPR001633 EAL domain RGE_RS01830 a46e6e4fdd55b19f9a2f7ee2303df45a 257 Gene3D G3DSA:3.20.20.450 27 243 4.8E-51 T 26-04-2016 IPR001633 EAL domain RGE_RS01830 a46e6e4fdd55b19f9a2f7ee2303df45a 257 SUPERFAMILY SSF141868 26 243 2.48E-57 T 26-04-2016 IPR001633 EAL domain RGE_RS15400 9561441f3957b4318e993bc067113fb8 218 SMART SM00478 56 212 1.8E-15 T 26-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RGE_RS15400 9561441f3957b4318e993bc067113fb8 218 Gene3D G3DSA:1.10.1670.10 160 214 9.4E-18 T 26-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RGE_RS15400 9561441f3957b4318e993bc067113fb8 218 SUPERFAMILY SSF48150 36 210 3.49E-42 T 26-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RGE_RS15400 9561441f3957b4318e993bc067113fb8 218 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 53 181 2.1E-10 T 26-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RGE_RS15400 9561441f3957b4318e993bc067113fb8 218 PANTHER PTHR10242:SF0 16 209 2.6E-65 T 26-04-2016 RGE_RS15400 9561441f3957b4318e993bc067113fb8 218 PANTHER PTHR10242 16 209 2.6E-65 T 26-04-2016 RGE_RS15400 9561441f3957b4318e993bc067113fb8 218 Gene3D G3DSA:1.10.340.30 47 157 4.6E-33 T 26-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RGE_RS16995 ef4d34a397e888107c9d5673d1810dc2 149 Pfam PF00692 dUTPase 16 147 7.1E-37 T 26-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 RGE_RS16995 ef4d34a397e888107c9d5673d1810dc2 149 TIGRFAM TIGR00576 dut: dUTP diphosphatase 14 147 2.6E-47 T 26-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 RGE_RS16995 ef4d34a397e888107c9d5673d1810dc2 149 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 6 148 32.142 T 26-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 RGE_RS16995 ef4d34a397e888107c9d5673d1810dc2 149 SUPERFAMILY SSF51283 9 148 2.22E-49 T 26-04-2016 IPR029054 dUTPase-like RGE_RS16995 ef4d34a397e888107c9d5673d1810dc2 149 PANTHER PTHR11241 17 148 1.2E-46 T 26-04-2016 RGE_RS16995 ef4d34a397e888107c9d5673d1810dc2 149 Gene3D G3DSA:2.70.40.10 12 148 9.8E-49 T 26-04-2016 IPR029054 dUTPase-like RGE_RS03895 661bd64089c9741dcc9facd3603ea201 472 Pfam PF00437 Type II/IV secretion system protein 117 380 5.5E-85 T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS03895 661bd64089c9741dcc9facd3603ea201 472 PANTHER PTHR30258:SF9 7 472 1.8E-215 T 26-04-2016 RGE_RS03895 661bd64089c9741dcc9facd3603ea201 472 Gene3D G3DSA:3.40.50.300 220 470 3.8E-96 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03895 661bd64089c9741dcc9facd3603ea201 472 SUPERFAMILY SSF160246 5 66 9.15E-8 T 26-04-2016 RGE_RS03895 661bd64089c9741dcc9facd3603ea201 472 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 6 470 2.0E-206 T 26-04-2016 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 RGE_RS03895 661bd64089c9741dcc9facd3603ea201 472 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 308 322 - T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS03895 661bd64089c9741dcc9facd3603ea201 472 SUPERFAMILY SSF52540 90 470 2.13E-102 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03895 661bd64089c9741dcc9facd3603ea201 472 Gene3D G3DSA:3.30.450.90 86 213 2.6E-53 T 26-04-2016 RGE_RS03895 661bd64089c9741dcc9facd3603ea201 472 PANTHER PTHR30258 7 472 1.8E-215 T 26-04-2016 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 SUPERFAMILY SSF53850 5 215 1.95E-80 T 26-04-2016 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 4 300 35.489 T 26-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 PANTHER PTHR11557:SF0 6 306 8.7E-127 T 26-04-2016 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 PANTHER PTHR11557 6 306 8.7E-127 T 26-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 297 1.2E-100 T 26-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 Gene3D G3DSA:3.40.190.10 3 108 1.3E-43 T 26-04-2016 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 Gene3D G3DSA:3.30.160.40 219 306 1.9E-16 T 26-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 7 211 4.6E-77 T 26-04-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 1.5E-44 T 26-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 1.5E-44 T 26-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 1.5E-44 T 26-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 PRINTS PR00151 Porphobilinogen deaminase signature 228 245 1.5E-44 T 26-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 1.5E-44 T 26-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 224 297 3.2E-9 T 26-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 PIRSF PIRSF001438 1 309 9.9E-108 T 26-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 Gene3D G3DSA:3.40.190.10 109 197 1.1E-39 T 26-04-2016 RGE_RS17820 8e4197706ddcc6412d9396f50a772871 309 SUPERFAMILY SSF54782 219 307 8.11E-15 T 26-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RGE_RS20410 de268855bf4073288212c2b6c7c15695 303 Pfam PF13489 Methyltransferase domain 45 199 4.3E-7 T 26-04-2016 RGE_RS20410 de268855bf4073288212c2b6c7c15695 303 PANTHER PTHR13090 13 252 2.7E-13 T 26-04-2016 RGE_RS20410 de268855bf4073288212c2b6c7c15695 303 PANTHER PTHR13090:SF3 13 252 2.7E-13 T 26-04-2016 RGE_RS20410 de268855bf4073288212c2b6c7c15695 303 SUPERFAMILY SSF53335 40 225 1.28E-20 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS20410 de268855bf4073288212c2b6c7c15695 303 Gene3D G3DSA:3.40.50.150 35 207 2.6E-13 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS20450 b0db3826cec4c38adb5f35832e0d271c 289 Gene3D G3DSA:3.40.50.2020 157 277 7.8E-22 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS20450 b0db3826cec4c38adb5f35832e0d271c 289 PANTHER PTHR10210:SF32 13 276 2.6E-41 T 26-04-2016 RGE_RS20450 b0db3826cec4c38adb5f35832e0d271c 289 SUPERFAMILY SSF53271 10 134 1.4E-24 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS20450 b0db3826cec4c38adb5f35832e0d271c 289 Pfam PF00156 Phosphoribosyl transferase domain 161 246 1.3E-11 T 26-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RGE_RS20450 b0db3826cec4c38adb5f35832e0d271c 289 SMART SM01400 2 116 2.9E-23 T 26-04-2016 RGE_RS20450 b0db3826cec4c38adb5f35832e0d271c 289 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 11 288 3.2E-47 T 26-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RGE_RS20450 b0db3826cec4c38adb5f35832e0d271c 289 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 108 2.3E-10 T 26-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RGE_RS20450 b0db3826cec4c38adb5f35832e0d271c 289 Gene3D G3DSA:3.40.50.2020 4 134 1.9E-17 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS20450 b0db3826cec4c38adb5f35832e0d271c 289 PANTHER PTHR10210 13 276 2.6E-41 T 26-04-2016 RGE_RS20450 b0db3826cec4c38adb5f35832e0d271c 289 SUPERFAMILY SSF53271 161 287 2.23E-26 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS08645 38ad3e6edbf50f6355d0a4b35334e50b 237 PANTHER PTHR26402 1 116 2.4E-33 T 26-04-2016 RGE_RS08645 38ad3e6edbf50f6355d0a4b35334e50b 237 Gene3D G3DSA:2.40.50.40 132 197 5.1E-11 T 26-04-2016 RGE_RS08645 38ad3e6edbf50f6355d0a4b35334e50b 237 SMART SM00850 140 235 1.2E-24 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS08645 38ad3e6edbf50f6355d0a4b35334e50b 237 Pfam PF00072 Response regulator receiver domain 3 108 2.4E-24 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08645 38ad3e6edbf50f6355d0a4b35334e50b 237 Pfam PF04397 LytTr DNA-binding domain 141 234 3.1E-19 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS08645 38ad3e6edbf50f6355d0a4b35334e50b 237 SMART SM00448 1 111 4.1E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08645 38ad3e6edbf50f6355d0a4b35334e50b 237 SUPERFAMILY SSF52172 1 129 5.27E-32 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS08645 38ad3e6edbf50f6355d0a4b35334e50b 237 Gene3D G3DSA:3.40.50.2300 1 117 9.7E-31 T 26-04-2016 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 PANTHER PTHR11533:SF152 611 883 0.0 T 26-04-2016 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 PANTHER PTHR11533:SF152 12 590 0.0 T 26-04-2016 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 129 144 2.9E-9 T 26-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 179 194 2.9E-9 T 26-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 297 312 2.9E-9 T 26-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 261 271 2.9E-9 T 26-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 316 328 2.9E-9 T 26-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 PANTHER PTHR11533 611 883 0.0 T 26-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 PANTHER PTHR11533 12 590 0.0 T 26-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 Gene3D G3DSA:1.10.390.10 311 461 8.7E-28 T 26-04-2016 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 Pfam PF11940 Domain of unknown function (DUF3458) 471 840 3.2E-133 T 26-04-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 Gene3D G3DSA:1.25.50.10 552 883 1.2E-112 T 26-04-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 SUPERFAMILY SSF63737 10 196 8.24E-43 T 26-04-2016 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 881 0.0 T 26-04-2016 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 SUPERFAMILY SSF55486 211 461 6.01E-65 T 26-04-2016 RGE_RS09030 e9e85b1e26533b03c889e988a51113c6 886 Pfam PF01433 Peptidase family M1 34 391 4.9E-60 T 26-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RGE_RS18405 055802bb205a4cadcc87da5753b0356c 122 Pfam PF14346 Domain of unknown function (DUF4398) 16 114 4.9E-19 T 26-04-2016 IPR025511 Domain of unknown function DUF4398 RGE_RS09260 9a7e9a403806000cfd1282ef0db1d10e 207 Pfam PF00589 Phage integrase family 42 191 1.1E-15 T 26-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS09260 9a7e9a403806000cfd1282ef0db1d10e 207 SUPERFAMILY SSF56349 21 204 1.27E-35 T 26-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RGE_RS09260 9a7e9a403806000cfd1282ef0db1d10e 207 Gene3D G3DSA:1.10.443.10 21 191 1.7E-27 T 26-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS09260 9a7e9a403806000cfd1282ef0db1d10e 207 PANTHER PTHR30349 44 201 4.4E-16 T 26-04-2016 RGE_RS03925 93d1beef07d2dfb7f7022c3cea3cf091 200 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS03925 93d1beef07d2dfb7f7022c3cea3cf091 200 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 30 7.0E-9 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS03925 93d1beef07d2dfb7f7022c3cea3cf091 200 SUPERFAMILY SSF54523 42 191 3.81E-11 T 26-04-2016 RGE_RS03925 93d1beef07d2dfb7f7022c3cea3cf091 200 Pfam PF13633 Prokaryotic N-terminal methylation site 9 33 1.9E-11 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS03925 93d1beef07d2dfb7f7022c3cea3cf091 200 Pfam PF11612 Type II secretion system (T2SS), protein J 45 189 1.5E-7 T 26-04-2016 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 RGE_RS13540 625ad590611d25b3f7e3c222f5b00c23 403 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 49 274 1.2E-13 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS13540 625ad590611d25b3f7e3c222f5b00c23 403 PANTHER PTHR30572:SF3 1 319 1.1E-106 T 26-04-2016 RGE_RS13540 625ad590611d25b3f7e3c222f5b00c23 403 SUPERFAMILY SSF111369 54 262 9.81E-25 T 26-04-2016 RGE_RS13540 625ad590611d25b3f7e3c222f5b00c23 403 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 274 1.3E-38 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS13540 625ad590611d25b3f7e3c222f5b00c23 403 Gene3D G3DSA:2.40.50.100 63 96 1.7E-17 T 26-04-2016 RGE_RS13540 625ad590611d25b3f7e3c222f5b00c23 403 Gene3D G3DSA:2.40.50.100 185 217 1.7E-17 T 26-04-2016 RGE_RS13540 625ad590611d25b3f7e3c222f5b00c23 403 PANTHER PTHR30572 1 319 1.1E-106 T 26-04-2016 RGE_RS08910 31e591249c36ee04b5154128813b6cc2 432 Gene3D G3DSA:3.30.465.10 340 425 6.5E-28 T 26-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RGE_RS08910 31e591249c36ee04b5154128813b6cc2 432 SMART SM01091 344 426 7.1E-31 T 26-04-2016 IPR005170 Transporter-associated domain RGE_RS08910 31e591249c36ee04b5154128813b6cc2 432 Pfam PF01595 Domain of unknown function DUF21 5 196 2.6E-43 T 26-04-2016 IPR002550 Domain of unknown function DUF21 RGE_RS08910 31e591249c36ee04b5154128813b6cc2 432 SUPERFAMILY SSF56176 342 431 4.09E-23 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS08910 31e591249c36ee04b5154128813b6cc2 432 Pfam PF03471 Transporter associated domain 345 425 6.1E-22 T 26-04-2016 IPR005170 Transporter-associated domain RGE_RS08910 31e591249c36ee04b5154128813b6cc2 432 PANTHER PTHR22777 1 432 2.8E-162 T 26-04-2016 RGE_RS08910 31e591249c36ee04b5154128813b6cc2 432 Pfam PF00571 CBS domain 217 260 0.0055 T 26-04-2016 IPR000644 CBS domain RGE_RS08910 31e591249c36ee04b5154128813b6cc2 432 Pfam PF00571 CBS domain 281 329 1.5E-6 T 26-04-2016 IPR000644 CBS domain RGE_RS08910 31e591249c36ee04b5154128813b6cc2 432 PANTHER PTHR22777:SF8 1 432 2.8E-162 T 26-04-2016 RGE_RS08910 31e591249c36ee04b5154128813b6cc2 432 SUPERFAMILY SSF54631 198 333 2.65E-28 T 26-04-2016 RGE_RS08910 31e591249c36ee04b5154128813b6cc2 432 Gene3D G3DSA:3.10.580.10 197 339 1.2E-16 T 26-04-2016 RGE_RS03985 b3d9224944dc514b519a94c501b90c6d 322 PANTHER PTHR24220 33 319 3.0E-143 T 26-04-2016 RGE_RS03985 b3d9224944dc514b519a94c501b90c6d 322 PANTHER PTHR24220 6 16 3.0E-143 T 26-04-2016 RGE_RS03985 b3d9224944dc514b519a94c501b90c6d 322 PANTHER PTHR24220:SF336 33 319 3.0E-143 T 26-04-2016 RGE_RS03985 b3d9224944dc514b519a94c501b90c6d 322 PANTHER PTHR24220:SF336 6 16 3.0E-143 T 26-04-2016 RGE_RS03985 b3d9224944dc514b519a94c501b90c6d 322 Gene3D G3DSA:3.40.50.300 3 256 1.2E-78 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03985 b3d9224944dc514b519a94c501b90c6d 322 Pfam PF00005 ABC transporter 37 181 8.4E-34 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS03985 b3d9224944dc514b519a94c501b90c6d 322 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 315 1.1E-24 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS03985 b3d9224944dc514b519a94c501b90c6d 322 SUPERFAMILY SSF52540 28 251 7.57E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03985 b3d9224944dc514b519a94c501b90c6d 322 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 296 1.4E-18 T 26-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RGE_RS03985 b3d9224944dc514b519a94c501b90c6d 322 SMART SM00382 45 230 2.5E-14 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS03985 b3d9224944dc514b519a94c501b90c6d 322 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS09555 45c4df0fb1d52b85663e75ed648ce0a0 256 SUPERFAMILY SSF101801 190 249 5.49E-7 T 26-04-2016 IPR001543 Surface presentation of antigen (SpoA) RGE_RS09555 45c4df0fb1d52b85663e75ed648ce0a0 256 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 192 249 2.8E-8 T 26-04-2016 IPR001543 Surface presentation of antigen (SpoA) RGE_RS05545 c00694370aa7aade7ee72a35415ee988 390 Gene3D G3DSA:1.20.1250.20 208 385 1.8E-7 T 26-04-2016 RGE_RS05545 c00694370aa7aade7ee72a35415ee988 390 SUPERFAMILY SSF103473 15 383 1.44E-19 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS11260 2bedc2fec801e51e61c94636d5102a51 456 PIRSF PIRSF005348 18 455 2.6E-143 T 26-04-2016 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 RGE_RS11260 2bedc2fec801e51e61c94636d5102a51 456 Pfam PF03390 2-hydroxycarboxylate transporter family 36 447 1.9E-138 T 26-04-2016 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 RGE_RS11260 2bedc2fec801e51e61c94636d5102a51 456 PANTHER PTHR40033 27 456 1.5E-117 T 26-04-2016 RGE_RS11790 800eaaf5c4f029b00480874ce3ce400c 379 PANTHER PTHR30294:SF12 3 375 2.1E-102 T 26-04-2016 RGE_RS11790 800eaaf5c4f029b00480874ce3ce400c 379 PANTHER PTHR30294 3 375 2.1E-102 T 26-04-2016 RGE_RS11790 800eaaf5c4f029b00480874ce3ce400c 379 Pfam PF12698 ABC-2 family transporter protein 32 370 6.8E-46 T 26-04-2016 RGE_RS16595 a9811db9e0e666267af93d26d4e9cfa7 323 SUPERFAMILY SSF53850 109 285 3.53E-8 T 26-04-2016 RGE_RS16595 a9811db9e0e666267af93d26d4e9cfa7 323 PIRSF PIRSF017082 1 322 2.4E-73 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS16595 a9811db9e0e666267af93d26d4e9cfa7 323 PANTHER PTHR30349:SF16 1 291 1.4E-85 T 26-04-2016 RGE_RS16595 a9811db9e0e666267af93d26d4e9cfa7 323 PANTHER PTHR30349 1 291 1.4E-85 T 26-04-2016 RGE_RS16595 a9811db9e0e666267af93d26d4e9cfa7 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 43 316 2.0E-83 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS15715 769994781fc0dec9d1e159fde35cc33c 347 PANTHER PTHR12526 64 342 2.2E-39 T 26-04-2016 RGE_RS15715 769994781fc0dec9d1e159fde35cc33c 347 PANTHER PTHR12526 18 46 2.2E-39 T 26-04-2016 RGE_RS15715 769994781fc0dec9d1e159fde35cc33c 347 Pfam PF13439 Glycosyltransferase Family 4 18 127 3.9E-13 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS15715 769994781fc0dec9d1e159fde35cc33c 347 Gene3D G3DSA:3.40.50.2000 171 300 2.0E-18 T 26-04-2016 RGE_RS15715 769994781fc0dec9d1e159fde35cc33c 347 Pfam PF00534 Glycosyl transferases group 1 172 306 1.9E-21 T 26-04-2016 IPR001296 Glycosyl transferase, family 1 RGE_RS15715 769994781fc0dec9d1e159fde35cc33c 347 Gene3D G3DSA:3.40.50.720 19 86 1.5E-4 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15715 769994781fc0dec9d1e159fde35cc33c 347 SUPERFAMILY SSF53756 10 340 9.03E-63 T 26-04-2016 RGE_RS03385 f20e1b79f3bf3894dadacd5d966d2149 224 TIGRFAM TIGR01868 casD_Cas5e: CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI 3 206 8.9E-55 T 26-04-2016 IPR010147 CRISPR-associated protein, CasD GO:0003723|GO:0051607 RGE_RS03385 f20e1b79f3bf3894dadacd5d966d2149 224 Pfam PF09704 CRISPR-associated protein (Cas_Cas5) 3 210 5.0E-51 T 26-04-2016 IPR021124 CRISPR-associated protein, Cas5 GO:0043571 RGE_RS03385 f20e1b79f3bf3894dadacd5d966d2149 224 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 3 45 1.3E-11 T 26-04-2016 IPR013422 CRISPR-associated protein Cas5, N-terminal RGE_RS13135 287f4c0fcc64dd4fb50973c97b43332e 102 SUPERFAMILY SSF81273 62 102 1.84E-11 T 26-04-2016 RGE_RS13135 287f4c0fcc64dd4fb50973c97b43332e 102 SMART SM00528 54 102 5.5E-15 T 26-04-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RGE_RS13135 287f4c0fcc64dd4fb50973c97b43332e 102 Pfam PF00816 H-NS histone family 6 96 6.6E-30 T 26-04-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 RGE_RS13135 287f4c0fcc64dd4fb50973c97b43332e 102 Gene3D G3DSA:4.10.430.10 63 102 3.9E-13 T 26-04-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RGE_RS22870 b9e7d770adae97eff919faf779360273 231 PANTHER PTHR24220 8 226 1.6E-122 T 26-04-2016 RGE_RS22870 b9e7d770adae97eff919faf779360273 231 SMART SM00382 35 223 1.7E-15 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS22870 b9e7d770adae97eff919faf779360273 231 Pfam PF00005 ABC transporter 26 174 1.6E-34 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS22870 b9e7d770adae97eff919faf779360273 231 PANTHER PTHR24220:SF452 8 226 1.6E-122 T 26-04-2016 RGE_RS22870 b9e7d770adae97eff919faf779360273 231 Gene3D G3DSA:3.40.50.300 5 227 1.3E-73 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22870 b9e7d770adae97eff919faf779360273 231 SUPERFAMILY SSF52540 6 227 2.66E-73 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS22870 b9e7d770adae97eff919faf779360273 231 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS08085 a03ac05fc747711771f0c5d089a84eed 396 PANTHER PTHR30158 1 381 1.1E-167 T 26-04-2016 RGE_RS08085 a03ac05fc747711771f0c5d089a84eed 396 Gene3D G3DSA:2.40.50.100 175 210 2.7E-24 T 26-04-2016 RGE_RS08085 a03ac05fc747711771f0c5d089a84eed 396 Gene3D G3DSA:2.40.50.100 69 100 2.7E-24 T 26-04-2016 RGE_RS08085 a03ac05fc747711771f0c5d089a84eed 396 PANTHER PTHR30158:SF3 1 381 1.1E-167 T 26-04-2016 RGE_RS08085 a03ac05fc747711771f0c5d089a84eed 396 SUPERFAMILY SSF111369 55 303 4.45E-86 T 26-04-2016 RGE_RS08085 a03ac05fc747711771f0c5d089a84eed 396 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 378 1.1E-89 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS08085 a03ac05fc747711771f0c5d089a84eed 396 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 296 8.2E-15 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS03425 66364ea2e5bfdedd960d1ec949537989 794 Gene3D G3DSA:2.120.10.30 52 335 1.0E-8 T 26-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RGE_RS03425 66364ea2e5bfdedd960d1ec949537989 794 SUPERFAMILY SSF82171 130 193 1.57E-10 T 26-04-2016 RGE_RS03425 66364ea2e5bfdedd960d1ec949537989 794 SUPERFAMILY SSF82171 43 99 1.57E-10 T 26-04-2016 RGE_RS03425 66364ea2e5bfdedd960d1ec949537989 794 SUPERFAMILY SSF82171 263 289 1.57E-10 T 26-04-2016 RGE_RS03425 66364ea2e5bfdedd960d1ec949537989 794 SUPERFAMILY SSF82171 361 474 1.57E-10 T 26-04-2016 RGE_RS03425 66364ea2e5bfdedd960d1ec949537989 794 SUPERFAMILY SSF53474 495 745 1.63E-13 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS03425 66364ea2e5bfdedd960d1ec949537989 794 Gene3D G3DSA:3.40.50.1820 488 746 5.7E-18 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS23365 4264c5895a753956891910ca38a6ba21 208 SMART SM00091 93 159 3.2E-5 T 26-04-2016 IPR000014 PAS domain RGE_RS23365 4264c5895a753956891910ca38a6ba21 208 Pfam PF00989 PAS fold 101 151 3.7E-5 T 26-04-2016 IPR013767 PAS fold GO:0006355 RGE_RS23365 4264c5895a753956891910ca38a6ba21 208 Gene3D G3DSA:3.30.450.20 80 161 2.6E-9 T 26-04-2016 RGE_RS23365 4264c5895a753956891910ca38a6ba21 208 SUPERFAMILY SSF55785 80 186 3.54E-10 T 26-04-2016 IPR000014 PAS domain RGE_RS02925 3e7ea19fc90385feb156afdc06c30787 702 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 685 702 - T 26-04-2016 IPR010917 TonB-dependent receptor, conserved site RGE_RS02925 3e7ea19fc90385feb156afdc06c30787 702 PANTHER PTHR32552:SF11 31 434 2.8E-75 T 26-04-2016 RGE_RS02925 3e7ea19fc90385feb156afdc06c30787 702 Pfam PF00593 TonB dependent receptor 462 701 2.0E-28 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS02925 3e7ea19fc90385feb156afdc06c30787 702 Gene3D G3DSA:2.170.130.10 27 149 7.1E-32 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS02925 3e7ea19fc90385feb156afdc06c30787 702 SUPERFAMILY SSF56935 26 702 1.43E-113 T 26-04-2016 RGE_RS02925 3e7ea19fc90385feb156afdc06c30787 702 PANTHER PTHR32552:SF11 455 702 2.8E-75 T 26-04-2016 RGE_RS02925 3e7ea19fc90385feb156afdc06c30787 702 Pfam PF07715 TonB-dependent Receptor Plug Domain 44 147 7.7E-19 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS02925 3e7ea19fc90385feb156afdc06c30787 702 Gene3D G3DSA:2.40.170.20 150 702 3.8E-81 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS02925 3e7ea19fc90385feb156afdc06c30787 702 PANTHER PTHR32552 31 434 2.8E-75 T 26-04-2016 RGE_RS02925 3e7ea19fc90385feb156afdc06c30787 702 PANTHER PTHR32552 455 702 2.8E-75 T 26-04-2016 RGE_RS10240 276d831a072487ca18121c71ce742d6d 233 SMART SM00900 116 218 2.9E-13 T 26-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 RGE_RS10240 276d831a072487ca18121c71ce742d6d 233 PANTHER PTHR36118:SF1 14 216 5.4E-17 T 26-04-2016 RGE_RS10240 276d831a072487ca18121c71ce742d6d 233 PIRSF PIRSF006091 16 222 3.0E-26 T 26-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 RGE_RS10240 276d831a072487ca18121c71ce742d6d 233 PANTHER PTHR36118 14 216 5.4E-17 T 26-04-2016 RGE_RS10240 276d831a072487ca18121c71ce742d6d 233 Pfam PF04205 FMN-binding domain 116 215 5.7E-15 T 26-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 RGE_RS10240 276d831a072487ca18121c71ce742d6d 233 Hamap MF_00479 Electron transport complex subunit RsxG [rsxG]. 15 220 18.928 T 26-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 RGE_RS07215 92050ebf228d8a2173aeaba8aca01f4f 300 SUPERFAMILY SSF51735 4 164 1.36E-35 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS07215 92050ebf228d8a2173aeaba8aca01f4f 300 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 287 4.5E-37 T 26-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RGE_RS07215 92050ebf228d8a2173aeaba8aca01f4f 300 SUPERFAMILY SSF48179 167 289 1.13E-36 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS07215 92050ebf228d8a2173aeaba8aca01f4f 300 Gene3D G3DSA:1.10.1040.10 167 288 7.5E-46 T 26-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RGE_RS07215 92050ebf228d8a2173aeaba8aca01f4f 300 PANTHER PTHR22981:SF27 1 292 1.5E-121 T 26-04-2016 RGE_RS07215 92050ebf228d8a2173aeaba8aca01f4f 300 Gene3D G3DSA:3.40.50.720 2 165 7.0E-45 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS07215 92050ebf228d8a2173aeaba8aca01f4f 300 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 162 1.4E-35 T 26-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 RGE_RS07215 92050ebf228d8a2173aeaba8aca01f4f 300 PIRSF PIRSF000103 1 291 1.7E-63 T 26-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 RGE_RS07215 92050ebf228d8a2173aeaba8aca01f4f 300 PANTHER PTHR22981 1 292 1.5E-121 T 26-04-2016 RGE_RS16010 5140c4704f27d78df072b04ac80ce10f 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 216 2.0E-26 T 26-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RGE_RS16010 5140c4704f27d78df072b04ac80ce10f 383 PANTHER PTHR10909:SF227 1 383 3.3E-243 T 26-04-2016 RGE_RS16010 5140c4704f27d78df072b04ac80ce10f 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 118 4.1E-32 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS16010 5140c4704f27d78df072b04ac80ce10f 383 SUPERFAMILY SSF56645 2 240 4.06E-81 T 26-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RGE_RS16010 5140c4704f27d78df072b04ac80ce10f 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 373 1.6E-42 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS16010 5140c4704f27d78df072b04ac80ce10f 383 PANTHER PTHR10909 1 383 3.3E-243 T 26-04-2016 RGE_RS16010 5140c4704f27d78df072b04ac80ce10f 383 SUPERFAMILY SSF47203 228 377 4.03E-43 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS16010 5140c4704f27d78df072b04ac80ce10f 383 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 26-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RGE_RS16010 5140c4704f27d78df072b04ac80ce10f 383 Gene3D G3DSA:1.10.540.10 2 118 6.6E-36 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS16010 5140c4704f27d78df072b04ac80ce10f 383 Gene3D G3DSA:1.20.140.10 217 380 2.4E-55 T 26-04-2016 RGE_RS16010 5140c4704f27d78df072b04ac80ce10f 383 Gene3D G3DSA:2.40.110.10 121 216 5.8E-39 T 26-04-2016 RGE_RS08140 7dd16e3f71f8ae30562949632eb8672f 429 Pfam PF11902 Protein of unknown function (DUF3422) 7 422 6.2E-160 T 26-04-2016 IPR021830 Protein of unknown function DUF3422 RGE_RS19820 81db8db42ad4323736a8c0e336144ee6 276 Pfam PF08770 Sulphur oxidation protein SoxZ 180 266 1.1E-20 T 26-04-2016 IPR014880 Sulphur oxidation protein SoxZ RGE_RS19820 81db8db42ad4323736a8c0e336144ee6 276 SUPERFAMILY SSF81296 170 272 2.1E-21 T 26-04-2016 IPR014756 Immunoglobulin E-set RGE_RS19820 81db8db42ad4323736a8c0e336144ee6 276 Gene3D G3DSA:2.60.40.10 170 273 4.1E-22 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS19820 81db8db42ad4323736a8c0e336144ee6 276 TIGRFAM TIGR04557 fuse_rel_SoxYZ: quinoprotein dehydrogenase-associated SoxYZ-like carrier 43 266 3.7E-66 T 26-04-2016 IPR030831 Quinoprotein dehydrogenase-associated SoxYZ-like carrier RGE_RS19820 81db8db42ad4323736a8c0e336144ee6 276 Pfam PF13501 Sulfur oxidation protein SoxY 48 157 4.8E-31 T 26-04-2016 IPR032711 Ig-like SoxY domain RGE_RS19945 ddf4c5d4ddecd6138a2a44f55ad69ef9 405 Pfam PF13533 Biotin-lipoyl like 58 106 1.4E-10 T 26-04-2016 RGE_RS19945 ddf4c5d4ddecd6138a2a44f55ad69ef9 405 PANTHER PTHR30386:SF6 1 387 1.2E-147 T 26-04-2016 RGE_RS19945 ddf4c5d4ddecd6138a2a44f55ad69ef9 405 PANTHER PTHR30386 1 387 1.2E-147 T 26-04-2016 RGE_RS19945 ddf4c5d4ddecd6138a2a44f55ad69ef9 405 SUPERFAMILY SSF111369 57 110 1.15E-7 T 26-04-2016 RGE_RS19945 ddf4c5d4ddecd6138a2a44f55ad69ef9 405 Gene3D G3DSA:2.40.50.100 58 91 9.9E-19 T 26-04-2016 RGE_RS19945 ddf4c5d4ddecd6138a2a44f55ad69ef9 405 Gene3D G3DSA:2.40.50.100 226 259 9.9E-19 T 26-04-2016 RGE_RS19945 ddf4c5d4ddecd6138a2a44f55ad69ef9 405 SUPERFAMILY SSF111369 192 279 1.44E-8 T 26-04-2016 RGE_RS19945 ddf4c5d4ddecd6138a2a44f55ad69ef9 405 Pfam PF13437 HlyD family secretion protein 230 341 5.0E-15 T 26-04-2016 RGE_RS13320 a0f9a0a0acca1638c613bef7e35fc250 457 Pfam PF01425 Amidase 28 442 1.1E-78 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS13320 a0f9a0a0acca1638c613bef7e35fc250 457 PANTHER PTHR11895 10 452 6.7E-97 T 26-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS13320 a0f9a0a0acca1638c613bef7e35fc250 457 SUPERFAMILY SSF75304 11 453 3.79E-105 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS13320 a0f9a0a0acca1638c613bef7e35fc250 457 Gene3D G3DSA:3.90.1300.10 13 455 5.9E-106 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS23425 a71706153a8006a546a0c954e67fb4c1 149 SUPERFAMILY SSF46785 7 116 6.71E-12 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS23425 a71706153a8006a546a0c954e67fb4c1 149 Pfam PF01047 MarR family 40 80 7.5E-6 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS23425 a71706153a8006a546a0c954e67fb4c1 149 PANTHER PTHR38465 5 113 1.6E-18 T 26-04-2016 RGE_RS23425 a71706153a8006a546a0c954e67fb4c1 149 Gene3D G3DSA:1.10.10.10 7 84 4.4E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04685 c894ce62313cdf707bbd3d6f81c3affb 359 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 7 143 1.3E-25 T 26-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS04685 c894ce62313cdf707bbd3d6f81c3affb 359 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 5 353 3.1E-90 T 26-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS04685 c894ce62313cdf707bbd3d6f81c3affb 359 Gene3D G3DSA:3.40.50.2000 4 198 1.0E-56 T 26-04-2016 RGE_RS04685 c894ce62313cdf707bbd3d6f81c3affb 359 Gene3D G3DSA:3.40.50.2000 254 341 7.0E-9 T 26-04-2016 RGE_RS04685 c894ce62313cdf707bbd3d6f81c3affb 359 PANTHER PTHR21015 6 359 3.4E-96 T 26-04-2016 RGE_RS04685 c894ce62313cdf707bbd3d6f81c3affb 359 PANTHER PTHR21015:SF22 6 359 3.4E-96 T 26-04-2016 RGE_RS04685 c894ce62313cdf707bbd3d6f81c3affb 359 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 187 355 3.1E-34 T 26-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS04685 c894ce62313cdf707bbd3d6f81c3affb 359 SUPERFAMILY SSF53756 5 357 1.55E-106 T 26-04-2016 RGE_RS04685 c894ce62313cdf707bbd3d6f81c3affb 359 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 6 357 31.884 T 26-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS13345 689c7409d20735ac4396ffef3c3285c0 173 Pfam PF00156 Phosphoribosyl transferase domain 13 157 4.9E-21 T 26-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RGE_RS13345 689c7409d20735ac4396ffef3c3285c0 173 Gene3D G3DSA:3.40.50.2020 7 164 1.9E-34 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS13345 689c7409d20735ac4396ffef3c3285c0 173 SUPERFAMILY SSF53271 4 168 3.83E-34 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS21770 21f0e71b310d2a36138882e4c6b5d2b9 308 SUPERFAMILY SSF53807 28 301 3.92E-56 T 26-04-2016 RGE_RS21770 21f0e71b310d2a36138882e4c6b5d2b9 308 Pfam PF01497 Periplasmic binding protein 52 277 1.8E-31 T 26-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 RGE_RS21770 21f0e71b310d2a36138882e4c6b5d2b9 308 Gene3D G3DSA:3.40.50.1980 172 302 2.3E-29 T 26-04-2016 RGE_RS21770 21f0e71b310d2a36138882e4c6b5d2b9 308 PANTHER PTHR30535 30 305 4.8E-53 T 26-04-2016 RGE_RS21770 21f0e71b310d2a36138882e4c6b5d2b9 308 Gene3D G3DSA:3.40.50.1980 48 168 1.2E-24 T 26-04-2016 RGE_RS04020 88e4bb234219bf6d6e610169bdd53310 177 PIRSF PIRSF016481 4 176 2.6E-43 T 26-04-2016 IPR007446 Pilus assembly protein PilP RGE_RS04020 88e4bb234219bf6d6e610169bdd53310 177 Pfam PF04351 Pilus assembly protein, PilP 26 172 1.0E-49 T 26-04-2016 IPR007446 Pilus assembly protein PilP RGE_RS00285 85fc9408e3e3888e0827ed1270736833 258 SUPERFAMILY SSF55729 61 245 1.58E-17 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS00285 85fc9408e3e3888e0827ed1270736833 258 Gene3D G3DSA:3.40.630.30 141 247 6.3E-17 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS00285 85fc9408e3e3888e0827ed1270736833 258 Pfam PF00583 Acetyltransferase (GNAT) family 170 244 1.7E-9 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS22985 50c611a903dd4d58d1bb638102a75afe 310 Pfam PF13578 Methyltransferase domain 142 266 3.7E-15 T 26-04-2016 RGE_RS22985 50c611a903dd4d58d1bb638102a75afe 310 SUPERFAMILY SSF53335 84 302 5.94E-14 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS22985 50c611a903dd4d58d1bb638102a75afe 310 Gene3D G3DSA:3.40.50.150 103 302 2.2E-14 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16245 9386e476c921c6661061b0a06823dfc2 326 Gene3D G3DSA:3.90.180.10 1 145 1.5E-44 T 26-04-2016 IPR011032 GroES-like RGE_RS16245 9386e476c921c6661061b0a06823dfc2 326 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 140 161 - T 26-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RGE_RS16245 9386e476c921c6661061b0a06823dfc2 326 SUPERFAMILY SSF50129 1 140 3.65E-39 T 26-04-2016 IPR011032 GroES-like RGE_RS16245 9386e476c921c6661061b0a06823dfc2 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 100 6.4E-12 T 26-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RGE_RS16245 9386e476c921c6661061b0a06823dfc2 326 PANTHER PTHR11695 15 323 4.1E-126 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS16245 9386e476c921c6661061b0a06823dfc2 326 SMART SM00829 11 322 1.6E-45 T 26-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RGE_RS16245 9386e476c921c6661061b0a06823dfc2 326 Pfam PF00107 Zinc-binding dehydrogenase 151 274 5.4E-31 T 26-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RGE_RS16245 9386e476c921c6661061b0a06823dfc2 326 PANTHER PTHR11695:SF31 15 323 4.1E-126 T 26-04-2016 RGE_RS16245 9386e476c921c6661061b0a06823dfc2 326 Gene3D G3DSA:3.40.50.720 146 262 8.5E-36 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS16245 9386e476c921c6661061b0a06823dfc2 326 SUPERFAMILY SSF51735 115 291 8.1E-51 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS01150 a02543deb76394e20d33c91f0138ca21 171 Gene3D G3DSA:3.40.630.30 17 154 1.4E-30 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS01150 a02543deb76394e20d33c91f0138ca21 171 SUPERFAMILY SSF55729 19 152 7.89E-25 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS01150 a02543deb76394e20d33c91f0138ca21 171 Pfam PF00583 Acetyltransferase (GNAT) family 65 144 9.5E-14 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS01150 a02543deb76394e20d33c91f0138ca21 171 PANTHER PTHR10545 19 164 1.4E-37 T 26-04-2016 RGE_RS01150 a02543deb76394e20d33c91f0138ca21 171 PANTHER PTHR10545:SF38 19 164 1.4E-37 T 26-04-2016 RGE_RS12625 18723ae8afe0a6c4734e4d78576ac880 352 Pfam PF11678 Protein of unknown function (DUF3274) 191 265 1.6E-5 T 26-04-2016 IPR021692 Protein of unknown function DUF3274 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 PANTHER PTHR20857:SF19 9 276 2.2E-69 T 26-04-2016 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 17 269 31.283 T 26-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 Pfam PF02110 Hydroxyethylthiazole kinase family 15 262 1.4E-77 T 26-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 PANTHER PTHR20857 9 276 2.2E-69 T 26-04-2016 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 36 57 1.1E-36 T 26-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 93 110 1.1E-36 T 26-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 168 185 1.1E-36 T 26-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 67 75 1.1E-36 T 26-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 124 138 1.1E-36 T 26-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 23 30 1.1E-36 T 26-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 15 261 4.5E-80 T 26-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 PIRSF PIRSF000513 10 274 9.4E-84 T 26-04-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 Gene3D G3DSA:3.40.1190.20 10 272 1.1E-82 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS20320 5ece43e7635b659869a36bf7a1dcafb3 276 SUPERFAMILY SSF53613 11 268 1.56E-56 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS01055 db8088b5d8ec71a40c5a6ea9fd83e396 198 Gene3D G3DSA:1.20.1440.20 11 192 2.4E-58 T 26-04-2016 IPR023353 LemA-like domain RGE_RS01055 db8088b5d8ec71a40c5a6ea9fd83e396 198 PANTHER PTHR34478:SF2 1 195 3.6E-77 T 26-04-2016 RGE_RS01055 db8088b5d8ec71a40c5a6ea9fd83e396 198 SUPERFAMILY SSF140478 22 179 1.7E-49 T 26-04-2016 IPR023353 LemA-like domain RGE_RS01055 db8088b5d8ec71a40c5a6ea9fd83e396 198 Pfam PF04011 LemA family 9 192 3.8E-60 T 26-04-2016 IPR007156 LemA RGE_RS01055 db8088b5d8ec71a40c5a6ea9fd83e396 198 PANTHER PTHR34478 1 195 3.6E-77 T 26-04-2016 RGE_RS04895 512ecea22f5a5eba8bc546c25beea4cf 398 Gene3D G3DSA:3.40.630.10 13 179 6.2E-89 T 26-04-2016 RGE_RS04895 512ecea22f5a5eba8bc546c25beea4cf 398 Gene3D G3DSA:3.40.630.10 299 389 6.2E-89 T 26-04-2016 RGE_RS04895 512ecea22f5a5eba8bc546c25beea4cf 398 SUPERFAMILY SSF53187 299 386 2.31E-77 T 26-04-2016 RGE_RS04895 512ecea22f5a5eba8bc546c25beea4cf 398 SUPERFAMILY SSF53187 12 198 2.31E-77 T 26-04-2016 RGE_RS04895 512ecea22f5a5eba8bc546c25beea4cf 398 PANTHER PTHR11014 15 393 1.1E-133 T 26-04-2016 RGE_RS04895 512ecea22f5a5eba8bc546c25beea4cf 398 Gene3D G3DSA:3.30.70.360 182 298 1.5E-37 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS04895 512ecea22f5a5eba8bc546c25beea4cf 398 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 377 1.1E-101 T 26-04-2016 IPR017439 Amidohydrolase GO:0016787 RGE_RS04895 512ecea22f5a5eba8bc546c25beea4cf 398 Pfam PF07687 Peptidase dimerisation domain 187 281 1.2E-4 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS04895 512ecea22f5a5eba8bc546c25beea4cf 398 SUPERFAMILY SSF55031 185 295 1.03E-28 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS04895 512ecea22f5a5eba8bc546c25beea4cf 398 Pfam PF01546 Peptidase family M20/M25/M40 72 386 5.5E-32 T 26-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RGE_RS04895 512ecea22f5a5eba8bc546c25beea4cf 398 PIRSF PIRSF005962 2 391 2.7E-115 T 26-04-2016 IPR017439 Amidohydrolase GO:0016787 RGE_RS04895 512ecea22f5a5eba8bc546c25beea4cf 398 PANTHER PTHR11014:SF63 15 393 1.1E-133 T 26-04-2016 RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 SMART SM00267 451 621 1.7E-47 T 26-04-2016 IPR000160 GGDEF domain RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 PANTHER PTHR10799 482 619 8.0E-14 T 26-04-2016 RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 SUPERFAMILY SSF55073 467 618 9.42E-38 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 SUPERFAMILY SSF48452 144 331 1.42E-17 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 Gene3D G3DSA:1.25.40.10 240 393 9.5E-8 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 Gene3D G3DSA:3.30.70.270 463 618 2.5E-43 T 26-04-2016 RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 459 618 9.4E-36 T 26-04-2016 IPR000160 GGDEF domain RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 Gene3D G3DSA:1.25.40.10 119 239 3.3E-11 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 Pfam PF13424 Tetratricopeptide repeat 149 215 2.1E-7 T 26-04-2016 RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 Pfam PF00990 Diguanylate cyclase, GGDEF domain 463 616 2.7E-36 T 26-04-2016 IPR000160 GGDEF domain RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 SMART SM00028 144 177 350.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 SMART SM00028 221 254 220.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS18540 b70a77ddb3d277e675d84199fd49e24c 643 SMART SM00028 184 217 0.022 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS09385 31a1dacdf8ff12f3aa42e2cf8e152f33 126 Pfam PF11162 Protein of unknown function (DUF2946) 12 124 6.5E-17 T 26-04-2016 IPR021333 Protein of unknown function DUF2946 RGE_RS10110 b073f177d0055cd318379f32c41ca11c 306 Pfam PF02558 Ketopantoate reductase PanE/ApbA 8 152 3.0E-37 T 26-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS10110 b073f177d0055cd318379f32c41ca11c 306 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 175 298 8.3E-35 T 26-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS10110 b073f177d0055cd318379f32c41ca11c 306 SUPERFAMILY SSF48179 175 298 2.14E-33 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS10110 b073f177d0055cd318379f32c41ca11c 306 Gene3D G3DSA:3.40.50.720 6 184 5.6E-49 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS10110 b073f177d0055cd318379f32c41ca11c 306 SUPERFAMILY SSF51735 7 165 1.34E-20 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS10110 b073f177d0055cd318379f32c41ca11c 306 Gene3D G3DSA:1.10.1040.10 185 300 1.0E-38 T 26-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RGE_RS10110 b073f177d0055cd318379f32c41ca11c 306 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 7 299 4.8E-83 T 26-04-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS10110 b073f177d0055cd318379f32c41ca11c 306 PANTHER PTHR21708 2 298 1.3E-67 T 26-04-2016 RGE_RS08395 f11826f312dc0c25c6d73cc94d1af398 319 PANTHER PTHR30329:SF2 3 307 1.4E-103 T 26-04-2016 RGE_RS08395 f11826f312dc0c25c6d73cc94d1af398 319 Pfam PF00691 OmpA family 174 265 8.2E-14 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS08395 f11826f312dc0c25c6d73cc94d1af398 319 SUPERFAMILY SSF103088 171 278 1.31E-20 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS08395 f11826f312dc0c25c6d73cc94d1af398 319 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 16 67 1.7E-17 T 26-04-2016 IPR025713 Motility protein B, N-terminal domain RGE_RS08395 f11826f312dc0c25c6d73cc94d1af398 319 PANTHER PTHR30329 3 307 1.4E-103 T 26-04-2016 RGE_RS08395 f11826f312dc0c25c6d73cc94d1af398 319 Gene3D G3DSA:3.30.1330.60 169 278 5.1E-18 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS03510 89ef75870146deaf32c5fc8cf0d11acd 249 SUPERFAMILY SSF46785 195 243 3.57E-10 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS03510 89ef75870146deaf32c5fc8cf0d11acd 249 Pfam PF13545 Crp-like helix-turn-helix domain 155 244 1.1E-14 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS03510 89ef75870146deaf32c5fc8cf0d11acd 249 SUPERFAMILY SSF51206 12 145 2.49E-30 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS03510 89ef75870146deaf32c5fc8cf0d11acd 249 PANTHER PTHR24567 7 166 4.1E-35 T 26-04-2016 RGE_RS03510 89ef75870146deaf32c5fc8cf0d11acd 249 PANTHER PTHR24567 184 244 4.1E-35 T 26-04-2016 RGE_RS03510 89ef75870146deaf32c5fc8cf0d11acd 249 Gene3D G3DSA:2.60.120.10 15 149 2.6E-30 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS03510 89ef75870146deaf32c5fc8cf0d11acd 249 SMART SM00100 17 135 2.2E-14 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS03510 89ef75870146deaf32c5fc8cf0d11acd 249 Pfam PF00027 Cyclic nucleotide-binding domain 36 122 4.1E-17 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS03510 89ef75870146deaf32c5fc8cf0d11acd 249 SMART SM00419 191 239 1.9E-10 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS03510 89ef75870146deaf32c5fc8cf0d11acd 249 Gene3D G3DSA:1.10.10.10 188 244 1.7E-11 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 17 93 1.4E-16 T 26-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 506 600 2.9E-15 T 26-04-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 PANTHER PTHR10357 17 601 1.9E-115 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 Gene3D G3DSA:3.20.20.80 113 487 1.6E-84 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 SUPERFAMILY SSF51445 105 487 2.5E-93 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 Pfam PF00128 Alpha amylase, catalytic domain 154 226 4.8E-13 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 Pfam PF00128 Alpha amylase, catalytic domain 262 451 2.1E-8 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 SUPERFAMILY SSF81296 16 106 1.66E-22 T 26-04-2016 IPR014756 Immunoglobulin E-set RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 PIRSF PIRSF000463 13 601 7.5E-93 T 26-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 SUPERFAMILY SSF51011 498 600 1.23E-19 T 26-04-2016 RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 Gene3D G3DSA:2.60.40.1180 504 600 1.1E-22 T 26-04-2016 IPR013780 Glycosyl hydrolase, all-beta RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 SMART SM00642 130 485 1.4E-9 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 Gene3D G3DSA:2.60.40.10 16 107 2.0E-24 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS09290 ef5f7ce0ca08cd407fe019f2215265ed 602 PANTHER PTHR10357:SF110 17 601 1.9E-115 T 26-04-2016 RGE_RS09575 6a6d85101f4315ce4377a049cf01523a 235 PANTHER PTHR34982 23 232 5.1E-32 T 26-04-2016 RGE_RS09575 6a6d85101f4315ce4377a049cf01523a 235 Pfam PF02108 Flagellar assembly protein FliH 87 209 2.2E-27 T 26-04-2016 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE RGE_RS09575 6a6d85101f4315ce4377a049cf01523a 235 PANTHER PTHR34982:SF1 23 232 5.1E-32 T 26-04-2016 RGE_RS09575 6a6d85101f4315ce4377a049cf01523a 235 PRINTS PR01003 Flagellar assembly protein FliH signature 175 191 3.6E-7 T 26-04-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RGE_RS09575 6a6d85101f4315ce4377a049cf01523a 235 PRINTS PR01003 Flagellar assembly protein FliH signature 108 125 3.6E-7 T 26-04-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RGE_RS09575 6a6d85101f4315ce4377a049cf01523a 235 PRINTS PR01003 Flagellar assembly protein FliH signature 46 68 3.6E-7 T 26-04-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 RGE_RS18705 d2dbc792c916f868203eee18fd399e02 446 PANTHER PTHR37850:SF2 3 445 8.2E-148 T 26-04-2016 RGE_RS18705 d2dbc792c916f868203eee18fd399e02 446 SMART SM00858 363 428 5.4E-7 T 26-04-2016 IPR013974 SAF domain RGE_RS18705 d2dbc792c916f868203eee18fd399e02 446 Pfam PF08666 SAF domain 363 427 8.2E-5 T 26-04-2016 IPR013974 SAF domain RGE_RS18705 d2dbc792c916f868203eee18fd399e02 446 Gene3D G3DSA:3.40.50.720 15 176 3.6E-16 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS18705 d2dbc792c916f868203eee18fd399e02 446 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 25 135 3.2E-8 T 26-04-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RGE_RS18705 d2dbc792c916f868203eee18fd399e02 446 PANTHER PTHR37850 3 445 8.2E-148 T 26-04-2016 RGE_RS18705 d2dbc792c916f868203eee18fd399e02 446 SUPERFAMILY SSF51735 16 152 6.95E-22 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS19365 c215237eb8f214dbacfd7712fd07f275 301 PANTHER PTHR32322 12 300 5.5E-69 T 26-04-2016 RGE_RS19365 c215237eb8f214dbacfd7712fd07f275 301 SUPERFAMILY SSF103481 54 156 7.98E-16 T 26-04-2016 RGE_RS19365 c215237eb8f214dbacfd7712fd07f275 301 PANTHER PTHR32322:SF11 12 300 5.5E-69 T 26-04-2016 RGE_RS19365 c215237eb8f214dbacfd7712fd07f275 301 Pfam PF00892 EamA-like transporter family 167 297 2.4E-13 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS19365 c215237eb8f214dbacfd7712fd07f275 301 Pfam PF00892 EamA-like transporter family 22 153 6.2E-19 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS19365 c215237eb8f214dbacfd7712fd07f275 301 SUPERFAMILY SSF103481 210 300 5.23E-12 T 26-04-2016 RGE_RS18220 af54d0accb7e926391f6f61557005e5d 92 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 34 85 2.7E-16 T 26-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 RGE_RS18220 af54d0accb7e926391f6f61557005e5d 92 PANTHER PTHR34702:SF1 1 92 1.0E-14 T 26-04-2016 RGE_RS18220 af54d0accb7e926391f6f61557005e5d 92 PANTHER PTHR34702 1 92 1.0E-14 T 26-04-2016 RGE_RS07340 e5cc8420840eb188d4f4296326fb26bc 174 PANTHER PTHR13061 3 171 2.8E-70 T 26-04-2016 RGE_RS07340 e5cc8420840eb188d4f4296326fb26bc 174 SUPERFAMILY SSF51161 4 170 3.05E-46 T 26-04-2016 IPR011004 Trimeric LpxA-like RGE_RS07340 e5cc8420840eb188d4f4296326fb26bc 174 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 3.3E-9 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS07340 e5cc8420840eb188d4f4296326fb26bc 174 Gene3D G3DSA:2.160.10.10 4 168 1.8E-45 T 26-04-2016 RGE_RS17955 c5104ef25896d6996ef475647829c0de 563 PANTHER PTHR11814 20 555 4.5E-200 T 26-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 RGE_RS17955 c5104ef25896d6996ef475647829c0de 563 SUPERFAMILY SSF52091 447 552 1.02E-17 T 26-04-2016 IPR002645 STAS domain RGE_RS17955 c5104ef25896d6996ef475647829c0de 563 Gene3D G3DSA:3.30.750.24 447 551 4.4E-18 T 26-04-2016 IPR002645 STAS domain RGE_RS17955 c5104ef25896d6996ef475647829c0de 563 Pfam PF00916 Sulfate permease family 25 396 2.2E-84 T 26-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RGE_RS17955 c5104ef25896d6996ef475647829c0de 563 Pfam PF01740 STAS domain 446 548 3.2E-17 T 26-04-2016 IPR002645 STAS domain RGE_RS17955 c5104ef25896d6996ef475647829c0de 563 PANTHER PTHR11814:SF112 20 555 4.5E-200 T 26-04-2016 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SMART SM00028 162 195 490.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SMART SM00028 604 637 20.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SMART SM00028 874 907 320.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SMART SM00028 773 806 24.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SMART SM00028 196 230 94.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SMART SM00028 25 58 440.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SMART SM00028 367 400 0.35 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SMART SM00028 299 332 53.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SMART SM00028 467 500 170.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SMART SM00028 706 739 140.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SMART SM00028 128 161 14.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SMART SM00028 638 671 26.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SUPERFAMILY SSF48452 212 409 3.65E-17 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SUPERFAMILY SSF48452 134 263 6.54E-19 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SUPERFAMILY SSF48452 24 105 6.54E-19 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 TIGRFAM TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein 10 901 2.2E-204 T 26-04-2016 IPR014266 PEP-CTERM system TPR-repeat lipoprotein, putative RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Pfam PF14559 Tetratricopeptide repeat 851 906 1.4E-6 T 26-04-2016 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Gene3D G3DSA:1.25.40.10 349 410 9.9E-22 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Gene3D G3DSA:1.25.40.10 127 348 2.0E-29 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Gene3D G3DSA:1.25.40.10 776 899 8.0E-30 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Gene3D G3DSA:1.25.40.10 443 615 9.9E-22 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Gene3D G3DSA:1.25.40.10 616 742 8.0E-30 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Pfam PF13432 Tetratricopeptide repeat 779 823 5.0E-4 T 26-04-2016 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Pfam PF13432 Tetratricopeptide repeat 339 401 0.0014 T 26-04-2016 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Pfam PF13432 Tetratricopeptide repeat 438 497 0.014 T 26-04-2016 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Pfam PF13432 Tetratricopeptide repeat 609 670 3.9E-5 T 26-04-2016 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Pfam PF13432 Tetratricopeptide repeat 133 195 1.4E-5 T 26-04-2016 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Pfam PF13432 Tetratricopeptide repeat 507 570 0.0061 T 26-04-2016 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 Gene3D G3DSA:1.25.40.10 24 108 2.0E-5 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SUPERFAMILY SSF48452 585 907 7.39E-23 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 PANTHER PTHR23083 614 704 3.7E-40 T 26-04-2016 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 PANTHER PTHR23083 738 823 3.7E-40 T 26-04-2016 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 PANTHER PTHR23083 134 410 3.7E-40 T 26-04-2016 RGE_RS01980 ba9523d252354fae7d01a9b300e5dc2c 921 SUPERFAMILY SSF48452 366 499 2.85E-10 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS05110 5ea0ee3168f0c1f797d53012d33b2781 246 SUPERFAMILY SSF102705 2 245 1.03E-67 T 26-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RGE_RS05110 5ea0ee3168f0c1f797d53012d33b2781 246 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 4 233 1.0E-47 T 26-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RGE_RS05110 5ea0ee3168f0c1f797d53012d33b2781 246 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 2 242 1.3E-49 T 26-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RGE_RS05110 5ea0ee3168f0c1f797d53012d33b2781 246 Gene3D G3DSA:3.40.1390.30 1 105 1.9E-31 T 26-04-2016 RGE_RS05110 5ea0ee3168f0c1f797d53012d33b2781 246 Gene3D G3DSA:3.40.1390.30 106 213 2.3E-25 T 26-04-2016 RGE_RS05110 5ea0ee3168f0c1f797d53012d33b2781 246 PANTHER PTHR13799 1 243 9.7E-59 T 26-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RGE_RS05455 2cef0cc2dc92bad70277b4cda720fa1c 247 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 125 243 9.0E-34 T 26-04-2016 IPR014162 Tol-Pal system, YbgF RGE_RS05455 2cef0cc2dc92bad70277b4cda720fa1c 247 SUPERFAMILY SSF48452 127 239 2.03E-11 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS05455 2cef0cc2dc92bad70277b4cda720fa1c 247 Pfam PF13525 Outer membrane lipoprotein 125 247 7.5E-16 T 26-04-2016 RGE_RS05455 2cef0cc2dc92bad70277b4cda720fa1c 247 Gene3D G3DSA:1.25.40.10 127 243 4.7E-11 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS05455 2cef0cc2dc92bad70277b4cda720fa1c 247 Pfam PF16331 TolA binding protein trimerisation 30 111 4.9E-8 T 26-04-2016 IPR032519 YbgF, trimerisation domain GO:0070206 RGE_RS15870 72ba5c9333d5ddcfda01745e5136bef4 410 SUPERFAMILY SSF53383 7 394 1.73E-97 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS15870 72ba5c9333d5ddcfda01745e5136bef4 410 Pfam PF00155 Aminotransferase class I and II 35 394 3.2E-53 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS15870 72ba5c9333d5ddcfda01745e5136bef4 410 PANTHER PTHR11751 9 401 2.5E-164 T 26-04-2016 RGE_RS15870 72ba5c9333d5ddcfda01745e5136bef4 410 Gene3D G3DSA:3.90.1150.10 282 406 7.2E-42 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS15870 72ba5c9333d5ddcfda01745e5136bef4 410 PANTHER PTHR11751:SF303 9 401 2.5E-164 T 26-04-2016 RGE_RS15870 72ba5c9333d5ddcfda01745e5136bef4 410 Gene3D G3DSA:3.40.640.10 50 281 1.5E-67 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS18435 1ebf434529015066aec3f0325bfd0c1e 370 SUPERFAMILY SSF51905 7 211 1.65E-34 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18435 1ebf434529015066aec3f0325bfd0c1e 370 SUPERFAMILY SSF51905 304 356 1.65E-34 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18435 1ebf434529015066aec3f0325bfd0c1e 370 Gene3D G3DSA:3.30.9.10 211 303 6.3E-6 T 26-04-2016 RGE_RS18435 1ebf434529015066aec3f0325bfd0c1e 370 Gene3D G3DSA:3.30.9.10 83 134 6.3E-6 T 26-04-2016 RGE_RS18435 1ebf434529015066aec3f0325bfd0c1e 370 Pfam PF01266 FAD dependent oxidoreductase 8 341 9.2E-41 T 26-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RGE_RS18435 1ebf434529015066aec3f0325bfd0c1e 370 PANTHER PTHR13847:SF206 7 361 8.8E-29 T 26-04-2016 RGE_RS18435 1ebf434529015066aec3f0325bfd0c1e 370 PANTHER PTHR13847 7 361 8.8E-29 T 26-04-2016 RGE_RS18435 1ebf434529015066aec3f0325bfd0c1e 370 Gene3D G3DSA:3.50.50.60 135 210 5.4E-32 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18435 1ebf434529015066aec3f0325bfd0c1e 370 Gene3D G3DSA:3.50.50.60 4 82 5.4E-32 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS18435 1ebf434529015066aec3f0325bfd0c1e 370 Gene3D G3DSA:3.50.50.60 304 350 5.4E-32 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 Gene3D G3DSA:3.40.190.80 196 332 2.2E-57 T 26-04-2016 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 273 285 - T 26-04-2016 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 5 193 2.9E-61 T 26-04-2016 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 333 47.088 T 26-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 Gene3D G3DSA:3.30.540.10 4 194 9.0E-75 T 26-04-2016 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 PIRSF PIRSF500210 1 335 9.6E-129 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 PIRSF PIRSF000904 1 335 8.0E-125 T 26-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 PANTHER PTHR11556 4 332 3.8E-154 T 26-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 66 92 1.6E-70 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 148 171 1.6E-70 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 29 56 1.6E-70 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 205 232 1.6E-70 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 179 202 1.6E-70 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 307 332 1.6E-70 T 26-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RGE_RS09025 8baad68fe0d76c7ac2f98350aa4cd7e6 335 SUPERFAMILY SSF56655 3 331 8.25E-117 T 26-04-2016 RGE_RS14445 70ea51bd3bb2c20dccd53f3c3012a965 311 PANTHER PTHR30537 8 309 2.5E-96 T 26-04-2016 RGE_RS14445 70ea51bd3bb2c20dccd53f3c3012a965 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 2.0E-19 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14445 70ea51bd3bb2c20dccd53f3c3012a965 311 Pfam PF03466 LysR substrate binding domain 90 297 8.9E-43 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS14445 70ea51bd3bb2c20dccd53f3c3012a965 311 Gene3D G3DSA:3.40.190.10 86 175 2.4E-11 T 26-04-2016 RGE_RS14445 70ea51bd3bb2c20dccd53f3c3012a965 311 SUPERFAMILY SSF53850 91 299 1.65E-43 T 26-04-2016 RGE_RS14445 70ea51bd3bb2c20dccd53f3c3012a965 311 PANTHER PTHR30537:SF5 8 309 2.5E-96 T 26-04-2016 RGE_RS14445 70ea51bd3bb2c20dccd53f3c3012a965 311 Gene3D G3DSA:3.40.190.10 176 265 3.4E-17 T 26-04-2016 RGE_RS14445 70ea51bd3bb2c20dccd53f3c3012a965 311 Gene3D G3DSA:1.10.10.10 9 85 1.6E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14445 70ea51bd3bb2c20dccd53f3c3012a965 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.3E-6 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14445 70ea51bd3bb2c20dccd53f3c3012a965 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.3E-6 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14445 70ea51bd3bb2c20dccd53f3c3012a965 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.3E-6 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14445 70ea51bd3bb2c20dccd53f3c3012a965 311 SUPERFAMILY SSF46785 8 114 5.27E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07125 c4ed225390f3134824ff4e65c1cb2ca9 607 Gene3D G3DSA:1.20.1560.10 28 341 6.2E-68 T 26-04-2016 RGE_RS07125 c4ed225390f3134824ff4e65c1cb2ca9 607 SUPERFAMILY SSF90123 28 346 2.22E-67 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS07125 c4ed225390f3134824ff4e65c1cb2ca9 607 Gene3D G3DSA:3.40.50.300 361 593 8.6E-84 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07125 c4ed225390f3134824ff4e65c1cb2ca9 607 Pfam PF00005 ABC transporter 381 529 3.1E-34 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS07125 c4ed225390f3134824ff4e65c1cb2ca9 607 SMART SM00382 389 575 4.2E-22 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS07125 c4ed225390f3134824ff4e65c1cb2ca9 607 ProSitePatterns PS00211 ABC transporters family signature. 501 515 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS07125 c4ed225390f3134824ff4e65c1cb2ca9 607 PANTHER PTHR24221 14 601 2.5E-230 T 26-04-2016 RGE_RS07125 c4ed225390f3134824ff4e65c1cb2ca9 607 Pfam PF00664 ABC transporter transmembrane region 40 314 8.5E-49 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS07125 c4ed225390f3134824ff4e65c1cb2ca9 607 SUPERFAMILY SSF52540 355 600 2.21E-90 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10035 b54036fedeab3b97548a686f80283f1d 142 SUPERFAMILY SSF54593 12 130 1.48E-22 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS10035 b54036fedeab3b97548a686f80283f1d 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 124 1.3E-12 T 26-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RGE_RS10035 b54036fedeab3b97548a686f80283f1d 142 Gene3D G3DSA:3.10.180.10 2 128 6.4E-31 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS10035 b54036fedeab3b97548a686f80283f1d 142 PANTHER PTHR35006 9 141 8.5E-39 T 26-04-2016 RGE_RS02945 3161ca657176c4825c8b0d9df5654272 714 Pfam PF00593 TonB dependent receptor 491 713 4.3E-24 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS02945 3161ca657176c4825c8b0d9df5654272 714 PANTHER PTHR32552 11 45 4.5E-132 T 26-04-2016 RGE_RS02945 3161ca657176c4825c8b0d9df5654272 714 PANTHER PTHR32552 71 714 4.5E-132 T 26-04-2016 RGE_RS02945 3161ca657176c4825c8b0d9df5654272 714 PANTHER PTHR32552:SF17 11 45 4.5E-132 T 26-04-2016 RGE_RS02945 3161ca657176c4825c8b0d9df5654272 714 PANTHER PTHR32552:SF17 71 714 4.5E-132 T 26-04-2016 RGE_RS02945 3161ca657176c4825c8b0d9df5654272 714 SUPERFAMILY SSF56935 37 714 4.35E-127 T 26-04-2016 RGE_RS02945 3161ca657176c4825c8b0d9df5654272 714 Gene3D G3DSA:2.170.130.10 58 188 1.8E-38 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS02945 3161ca657176c4825c8b0d9df5654272 714 Gene3D G3DSA:2.40.170.20 195 714 1.0E-131 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS02945 3161ca657176c4825c8b0d9df5654272 714 Pfam PF07715 TonB-dependent Receptor Plug Domain 80 181 3.9E-19 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS02945 3161ca657176c4825c8b0d9df5654272 714 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 81 713 7.8E-100 T 26-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 RGE_RS16055 e526975bd2ee7218e4334bfbe1f9cb02 126 Pfam PF14534 Domain of unknown function (DUF4440) 12 110 8.2E-9 T 26-04-2016 IPR027843 Domain of unknown function DUF4440 RGE_RS16055 e526975bd2ee7218e4334bfbe1f9cb02 126 Gene3D G3DSA:3.10.450.50 11 119 1.0E-12 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS16055 e526975bd2ee7218e4334bfbe1f9cb02 126 SUPERFAMILY SSF54427 9 120 5.27E-16 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS06310 dbc283cbb394209d2a9fe0d4209dd226 140 Gene3D G3DSA:3.90.79.10 7 127 8.3E-36 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS06310 dbc283cbb394209d2a9fe0d4209dd226 140 PRINTS PR00502 NUDIX hydrolase family signature 37 51 1.0E-7 T 26-04-2016 IPR020476 NUDIX hydrolase RGE_RS06310 dbc283cbb394209d2a9fe0d4209dd226 140 PRINTS PR00502 NUDIX hydrolase family signature 51 66 1.0E-7 T 26-04-2016 IPR020476 NUDIX hydrolase RGE_RS06310 dbc283cbb394209d2a9fe0d4209dd226 140 PANTHER PTHR16099:SF5 4 137 7.4E-48 T 26-04-2016 RGE_RS06310 dbc283cbb394209d2a9fe0d4209dd226 140 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 26-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RGE_RS06310 dbc283cbb394209d2a9fe0d4209dd226 140 SUPERFAMILY SSF55811 8 127 1.35E-32 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS06310 dbc283cbb394209d2a9fe0d4209dd226 140 PANTHER PTHR16099 4 137 7.4E-48 T 26-04-2016 RGE_RS06310 dbc283cbb394209d2a9fe0d4209dd226 140 Pfam PF00293 NUDIX domain 9 127 3.3E-23 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS18870 43ba525fa8e4c41d0827f5ee2cedb2ca 139 PANTHER PTHR10516 7 139 1.8E-51 T 26-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type RGE_RS18870 43ba525fa8e4c41d0827f5ee2cedb2ca 139 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 49 135 2.8E-30 T 26-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RGE_RS18870 43ba525fa8e4c41d0827f5ee2cedb2ca 139 Gene3D G3DSA:3.10.50.40 19 139 1.3E-49 T 26-04-2016 RGE_RS18870 43ba525fa8e4c41d0827f5ee2cedb2ca 139 SUPERFAMILY SSF54534 12 138 3.54E-47 T 26-04-2016 RGE_RS09885 a88c9f87ea392dabef1c7065df44456f 158 PIRSF PIRSF010312 1 158 8.2E-27 T 26-04-2016 IPR016568 Sulphur oxidation, SoxY RGE_RS09885 a88c9f87ea392dabef1c7065df44456f 158 Pfam PF13501 Sulfur oxidation protein SoxY 48 156 1.2E-27 T 26-04-2016 IPR032711 Ig-like SoxY domain RGE_RS22740 bda048fcea1646f048b09b6905d724be 223 PANTHER PTHR26402:SF279 1 221 1.1E-81 T 26-04-2016 RGE_RS22740 bda048fcea1646f048b09b6905d724be 223 SUPERFAMILY SSF52172 1 174 8.54E-39 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS22740 bda048fcea1646f048b09b6905d724be 223 SMART SM00862 145 218 1.6E-23 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS22740 bda048fcea1646f048b09b6905d724be 223 Gene3D G3DSA:1.10.10.10 123 220 8.3E-28 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22740 bda048fcea1646f048b09b6905d724be 223 SMART SM00448 1 112 1.1E-37 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS22740 bda048fcea1646f048b09b6905d724be 223 PANTHER PTHR26402 1 221 1.1E-81 T 26-04-2016 RGE_RS22740 bda048fcea1646f048b09b6905d724be 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 218 4.3E-22 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS22740 bda048fcea1646f048b09b6905d724be 223 Pfam PF00072 Response regulator receiver domain 3 112 7.9E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS22740 bda048fcea1646f048b09b6905d724be 223 Gene3D G3DSA:3.40.50.2300 1 119 3.0E-37 T 26-04-2016 RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 SMART SM00564 341 383 0.55 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 SMART SM00564 713 746 0.0016 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 SMART SM00564 223 255 69.0 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 SMART SM00564 411 461 370.0 T 26-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 10 791 0.0 T 26-04-2016 IPR017511 PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related GO:0016021|GO:0016614|GO:0048038|GO:0055114 RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 PANTHER PTHR32303 578 792 5.4E-192 T 26-04-2016 RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 PANTHER PTHR32303 132 510 5.4E-192 T 26-04-2016 RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 Pfam PF13360 PQQ-like domain 228 392 3.1E-8 T 26-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 Pfam PF01011 PQQ enzyme repeat 725 756 1.9E-5 T 26-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 PANTHER PTHR32303:SF4 578 792 5.4E-192 T 26-04-2016 RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 PANTHER PTHR32303:SF4 132 510 5.4E-192 T 26-04-2016 RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 SUPERFAMILY SSF50998 165 524 7.59E-144 T 26-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 SUPERFAMILY SSF50998 559 791 7.59E-144 T 26-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 Gene3D G3DSA:2.140.10.10 570 791 2.4E-147 T 26-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RGE_RS17690 61dc83e6fd1a6985494a401322a45255 792 Gene3D G3DSA:2.140.10.10 144 536 2.4E-147 T 26-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RGE_RS00195 05cb3548e6b2f322b6bf14ced9cd9f45 393 Pfam PF03781 Sulfatase-modifying factor enzyme 1 318 391 1.1E-4 T 26-04-2016 IPR005532 Sulfatase-modifying factor enzyme RGE_RS00195 05cb3548e6b2f322b6bf14ced9cd9f45 393 Pfam PF03781 Sulfatase-modifying factor enzyme 1 178 310 1.3E-23 T 26-04-2016 IPR005532 Sulfatase-modifying factor enzyme RGE_RS00195 05cb3548e6b2f322b6bf14ced9cd9f45 393 SUPERFAMILY SSF56436 178 392 1.41E-62 T 26-04-2016 IPR016187 C-type lectin fold RGE_RS00195 05cb3548e6b2f322b6bf14ced9cd9f45 393 SUPERFAMILY SSF109854 1 143 4.88E-6 T 26-04-2016 RGE_RS00195 05cb3548e6b2f322b6bf14ced9cd9f45 393 PANTHER PTHR23150 6 393 2.4E-97 T 26-04-2016 RGE_RS00195 05cb3548e6b2f322b6bf14ced9cd9f45 393 Gene3D G3DSA:3.90.1580.10 177 309 2.7E-38 T 26-04-2016 IPR005532 Sulfatase-modifying factor enzyme RGE_RS00195 05cb3548e6b2f322b6bf14ced9cd9f45 393 Gene3D G3DSA:3.90.1580.10 316 392 9.9E-17 T 26-04-2016 IPR005532 Sulfatase-modifying factor enzyme RGE_RS00195 05cb3548e6b2f322b6bf14ced9cd9f45 393 PANTHER PTHR23150:SF24 6 393 2.4E-97 T 26-04-2016 RGE_RS00195 05cb3548e6b2f322b6bf14ced9cd9f45 393 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 8 390 6.0E-152 T 26-04-2016 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255|UniPathway: UPA01014 RGE_RS00195 05cb3548e6b2f322b6bf14ced9cd9f45 393 Pfam PF12867 DinB superfamily 12 147 2.1E-9 T 26-04-2016 IPR024775 DinB-like domain RGE_RS19520 057ba75f825fb94eb3fac387462abdcc 474 Gene3D G3DSA:2.30.40.10 26 73 9.9E-11 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS19520 057ba75f825fb94eb3fac387462abdcc 474 Pfam PF01979 Amidohydrolase family 66 433 3.8E-56 T 26-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RGE_RS19520 057ba75f825fb94eb3fac387462abdcc 474 PANTHER PTHR11271 404 463 1.9E-125 T 26-04-2016 RGE_RS19520 057ba75f825fb94eb3fac387462abdcc 474 SUPERFAMILY SSF51556 68 370 1.11E-92 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS19520 057ba75f825fb94eb3fac387462abdcc 474 PANTHER PTHR11271:SF6 22 388 1.9E-125 T 26-04-2016 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|UniPathway: UPA00603 RGE_RS19520 057ba75f825fb94eb3fac387462abdcc 474 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 30 433 1.0E-138 T 26-04-2016 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|UniPathway: UPA00603 RGE_RS19520 057ba75f825fb94eb3fac387462abdcc 474 Gene3D G3DSA:3.20.20.140 74 370 3.0E-103 T 26-04-2016 RGE_RS19520 057ba75f825fb94eb3fac387462abdcc 474 PANTHER PTHR11271 22 388 1.9E-125 T 26-04-2016 RGE_RS19520 057ba75f825fb94eb3fac387462abdcc 474 PANTHER PTHR11271:SF6 404 463 1.9E-125 T 26-04-2016 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|UniPathway: UPA00603 RGE_RS19520 057ba75f825fb94eb3fac387462abdcc 474 SUPERFAMILY SSF51338 30 78 1.33E-8 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 PANTHER PTHR32089:SF63 320 642 1.7E-138 T 26-04-2016 RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 SUPERFAMILY SSF58104 359 640 1.44E-68 T 26-04-2016 RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 SUPERFAMILY SSF103190 102 202 6.28E-12 T 26-04-2016 IPR029151 Periplasmic sensor domain-like RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 SMART SM00304 339 391 2.5E-12 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 SMART SM00283 392 639 2.8E-88 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 Pfam PF00672 HAMP domain 320 386 7.7E-13 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 413 442 3.4E-42 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 519 548 3.4E-42 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 567 596 3.4E-42 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 490 517 3.4E-42 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 Gene3D G3DSA:1.10.287.950 407 611 2.6E-57 T 26-04-2016 RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 Pfam PF17201 Cache 3/Cache 2 fusion domain 39 313 2.1E-67 T 26-04-2016 IPR033462 Cache 3/Cache 2 fusion domain RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 PANTHER PTHR32089 320 642 1.7E-138 T 26-04-2016 RGE_RS19240 29828be1830d8b1b268ec4d63edda2cc 643 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 445 638 9.8E-58 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS03065 d45dae2e4d92bd99144d3f71756aa95d 154 Pfam PF13411 MerR HTH family regulatory protein 1 68 1.8E-19 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS03065 d45dae2e4d92bd99144d3f71756aa95d 154 SMART SM00422 1 70 2.3E-28 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS03065 d45dae2e4d92bd99144d3f71756aa95d 154 Gene3D G3DSA:1.10.1660.10 1 55 5.9E-26 T 26-04-2016 RGE_RS03065 d45dae2e4d92bd99144d3f71756aa95d 154 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.9E-12 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS03065 d45dae2e4d92bd99144d3f71756aa95d 154 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.9E-12 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS03065 d45dae2e4d92bd99144d3f71756aa95d 154 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.9E-12 T 26-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RGE_RS03065 d45dae2e4d92bd99144d3f71756aa95d 154 PANTHER PTHR30204:SF18 1 112 1.9E-42 T 26-04-2016 RGE_RS03065 d45dae2e4d92bd99144d3f71756aa95d 154 Gene3D G3DSA:1.10.1660.10 56 129 6.8E-25 T 26-04-2016 RGE_RS03065 d45dae2e4d92bd99144d3f71756aa95d 154 PANTHER PTHR30204 1 112 1.9E-42 T 26-04-2016 RGE_RS03065 d45dae2e4d92bd99144d3f71756aa95d 154 TIGRFAM TIGR02047 CadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator 1 127 1.0E-47 T 26-04-2016 IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0045893|GO:0046872 RGE_RS03065 d45dae2e4d92bd99144d3f71756aa95d 154 SUPERFAMILY SSF46955 1 114 1.68E-34 T 26-04-2016 IPR009061 Putative DNA-binding domain RGE_RS04285 502396199d79280c8c044ef71369674d 170 SUPERFAMILY SSF89392 16 144 3.92E-19 T 26-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX RGE_RS04285 502396199d79280c8c044ef71369674d 170 Gene3D G3DSA:2.50.20.10 10 145 3.2E-19 T 26-04-2016 RGE_RS04285 502396199d79280c8c044ef71369674d 170 Pfam PF03550 Outer membrane lipoprotein LolB 28 147 8.7E-16 T 26-04-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 RGE_RS00080 9ef24a37e0179939ea2de26ec03dd6a7 251 SUPERFAMILY SSF53474 5 241 2.87E-36 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00080 9ef24a37e0179939ea2de26ec03dd6a7 251 PANTHER PTHR23024 7 213 3.7E-32 T 26-04-2016 RGE_RS00080 9ef24a37e0179939ea2de26ec03dd6a7 251 Pfam PF07859 alpha/beta hydrolase fold 23 211 5.5E-41 T 26-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 RGE_RS00080 9ef24a37e0179939ea2de26ec03dd6a7 251 PANTHER PTHR23024:SF24 7 213 3.7E-32 T 26-04-2016 RGE_RS00080 9ef24a37e0179939ea2de26ec03dd6a7 251 Gene3D G3DSA:3.40.50.1820 4 211 5.4E-45 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS10770 13b4990ad097c2bfcf4bb247b328311c 153 SUPERFAMILY SSF82093 29 134 2.62E-39 T 26-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RGE_RS10770 13b4990ad097c2bfcf4bb247b328311c 153 Gene3D G3DSA:2.40.50.140 25 122 1.5E-37 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS10770 13b4990ad097c2bfcf4bb247b328311c 153 Pfam PF03100 CcmE 4 128 1.4E-47 T 26-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RGE_RS10770 13b4990ad097c2bfcf4bb247b328311c 153 PANTHER PTHR34128 1 153 2.3E-55 T 26-04-2016 RGE_RS10770 13b4990ad097c2bfcf4bb247b328311c 153 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 138 33.087 T 26-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RGE_RS10770 13b4990ad097c2bfcf4bb247b328311c 153 PANTHER PTHR34128:SF1 1 153 2.3E-55 T 26-04-2016 RGE_RS00870 ff497dbb15a6a39c5048f00d9c8ab242 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 279 4.4E-32 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS00870 ff497dbb15a6a39c5048f00d9c8ab242 286 PANTHER PTHR30465 1 280 7.6E-100 T 26-04-2016 RGE_RS00870 ff497dbb15a6a39c5048f00d9c8ab242 286 SUPERFAMILY SSF161098 73 260 2.22E-29 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS00870 ff497dbb15a6a39c5048f00d9c8ab242 286 PANTHER PTHR30465:SF10 1 280 7.6E-100 T 26-04-2016 RGE_RS00870 ff497dbb15a6a39c5048f00d9c8ab242 286 Gene3D G3DSA:1.10.3720.10 72 276 1.7E-30 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS08290 efba37801a8b2e728cc335e47618b85a 140 Gene3D G3DSA:3.30.700.10 13 101 3.2E-9 T 26-04-2016 RGE_RS08290 efba37801a8b2e728cc335e47618b85a 140 PRINTS PR00813 Bacterial general secretion pathway protein G signature 12 37 2.2E-5 T 26-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RGE_RS08290 efba37801a8b2e728cc335e47618b85a 140 PRINTS PR00813 Bacterial general secretion pathway protein G signature 48 66 2.2E-5 T 26-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RGE_RS08290 efba37801a8b2e728cc335e47618b85a 140 SUPERFAMILY SSF54523 13 110 1.67E-15 T 26-04-2016 RGE_RS08290 efba37801a8b2e728cc335e47618b85a 140 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 34 121 9.2E-17 T 26-04-2016 IPR031982 Type IV minor pilin ComP RGE_RS08790 769652dd51756e3491d4d0b9e9d18a55 281 SUPERFAMILY SSF56726 131 206 5.36E-7 T 26-04-2016 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 RGE_RS08790 769652dd51756e3491d4d0b9e9d18a55 281 Gene3D G3DSA:3.40.1360.10 133 204 1.2E-6 T 26-04-2016 RGE_RS11690 6946ecd11f3c95939837bad54f180861 144 Gene3D G3DSA:2.20.25.10 1 47 5.0E-20 T 26-04-2016 RGE_RS11690 6946ecd11f3c95939837bad54f180861 144 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 143 6.8E-54 T 26-04-2016 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 RGE_RS11690 6946ecd11f3c95939837bad54f180861 144 PANTHER PTHR33797 1 143 7.3E-65 T 26-04-2016 RGE_RS11690 6946ecd11f3c95939837bad54f180861 144 SUPERFAMILY SSF82784 1 143 9.81E-44 T 26-04-2016 IPR003718 OsmC/Ohr family RGE_RS11690 6946ecd11f3c95939837bad54f180861 144 Pfam PF02566 OsmC-like protein 43 141 2.4E-17 T 26-04-2016 IPR003718 OsmC/Ohr family RGE_RS11690 6946ecd11f3c95939837bad54f180861 144 Gene3D G3DSA:3.30.300.20 48 143 1.8E-34 T 26-04-2016 IPR015946 K homology domain-like, alpha/beta RGE_RS11690 6946ecd11f3c95939837bad54f180861 144 PANTHER PTHR33797:SF2 1 143 7.3E-65 T 26-04-2016 RGE_RS16440 244cd518ca7444b3759b9f3b452398b5 111 PRINTS PR00606 Class ID cytochrome C signature 70 83 7.1E-16 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS16440 244cd518ca7444b3759b9f3b452398b5 111 PRINTS PR00606 Class ID cytochrome C signature 85 95 7.1E-16 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS16440 244cd518ca7444b3759b9f3b452398b5 111 PRINTS PR00606 Class ID cytochrome C signature 32 45 7.1E-16 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS16440 244cd518ca7444b3759b9f3b452398b5 111 PRINTS PR00606 Class ID cytochrome C signature 47 60 7.1E-16 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS16440 244cd518ca7444b3759b9f3b452398b5 111 PRINTS PR00606 Class ID cytochrome C signature 99 109 7.1E-16 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS16440 244cd518ca7444b3759b9f3b452398b5 111 SUPERFAMILY SSF46626 30 109 2.55E-14 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS16440 244cd518ca7444b3759b9f3b452398b5 111 Pfam PF00034 Cytochrome c 30 109 4.4E-8 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS16440 244cd518ca7444b3759b9f3b452398b5 111 Gene3D G3DSA:1.10.760.10 29 109 4.1E-24 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS07820 d7808feef7c48764aa7ec685ba985a10 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 277 4.9E-15 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS07820 d7808feef7c48764aa7ec685ba985a10 284 PANTHER PTHR32243 1 284 5.1E-128 T 26-04-2016 RGE_RS07820 d7808feef7c48764aa7ec685ba985a10 284 PANTHER PTHR32243:SF23 1 284 5.1E-128 T 26-04-2016 RGE_RS07820 d7808feef7c48764aa7ec685ba985a10 284 Gene3D G3DSA:1.10.3720.10 3 269 3.6E-56 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS07820 d7808feef7c48764aa7ec685ba985a10 284 SUPERFAMILY SSF161098 4 284 1.87E-63 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS10820 73d6036400ded45c931c3c960ce78f4d 234 Gene3D G3DSA:3.40.50.880 4 230 7.5E-77 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS10820 73d6036400ded45c931c3c960ce78f4d 234 PANTHER PTHR11019 89 186 7.7E-34 T 26-04-2016 RGE_RS10820 73d6036400ded45c931c3c960ce78f4d 234 PANTHER PTHR11019 12 72 7.7E-34 T 26-04-2016 RGE_RS10820 73d6036400ded45c931c3c960ce78f4d 234 PANTHER PTHR11019:SF1 89 186 7.7E-34 T 26-04-2016 RGE_RS10820 73d6036400ded45c931c3c960ce78f4d 234 PANTHER PTHR11019:SF1 12 72 7.7E-34 T 26-04-2016 RGE_RS10820 73d6036400ded45c931c3c960ce78f4d 234 SUPERFAMILY SSF52317 11 229 2.29E-65 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS10820 73d6036400ded45c931c3c960ce78f4d 234 Pfam PF01965 DJ-1/PfpI family 35 217 1.8E-12 T 26-04-2016 IPR002818 DJ-1/PfpI RGE_RS07570 4fe56508b8490edcca80fa0124b201f3 177 SUPERFAMILY SSF46785 2 134 1.14E-36 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07570 4fe56508b8490edcca80fa0124b201f3 177 Pfam PF02082 Transcriptional regulator 1 83 2.0E-27 T 26-04-2016 IPR000944 Transcription regulator Rrf2-type RGE_RS07570 4fe56508b8490edcca80fa0124b201f3 177 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 135 6.5E-64 T 26-04-2016 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 RGE_RS07570 4fe56508b8490edcca80fa0124b201f3 177 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 132 3.0E-43 T 26-04-2016 IPR000944 Transcription regulator Rrf2-type RGE_RS07570 4fe56508b8490edcca80fa0124b201f3 177 Gene3D G3DSA:1.10.10.10 1 135 2.0E-31 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07570 4fe56508b8490edcca80fa0124b201f3 177 PANTHER PTHR33221:SF1 2 156 4.8E-59 T 26-04-2016 RGE_RS07570 4fe56508b8490edcca80fa0124b201f3 177 PANTHER PTHR33221 2 156 4.8E-59 T 26-04-2016 RGE_RS00985 d6ba303b1f750a1c7a75798a02fb7828 395 SMART SM00897 39 214 5.7E-42 T 26-04-2016 IPR013702 FIST domain, N-terminal RGE_RS00985 d6ba303b1f750a1c7a75798a02fb7828 395 Pfam PF10442 FIST C domain 215 378 1.4E-31 T 26-04-2016 IPR019494 FIST, C-domain RGE_RS00985 d6ba303b1f750a1c7a75798a02fb7828 395 Pfam PF08495 FIST N domain 42 212 2.0E-29 T 26-04-2016 IPR013702 FIST domain, N-terminal RGE_RS00985 d6ba303b1f750a1c7a75798a02fb7828 395 PIRSF PIRSF018953 2 395 2.4E-45 T 26-04-2016 IPR016741 Uncharacterised conserved protein UCP018953 RGE_RS00985 d6ba303b1f750a1c7a75798a02fb7828 395 SMART SM01204 215 379 5.4E-32 T 26-04-2016 IPR019494 FIST, C-domain RGE_RS19870 80827c4bba0f1b63e1a408ae60ecead1 386 SUPERFAMILY SSF53822 54 348 1.38E-17 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS19870 80827c4bba0f1b63e1a408ae60ecead1 386 Gene3D G3DSA:3.40.50.2300 56 207 4.3E-8 T 26-04-2016 RGE_RS05930 ffdd39635745abd0b98500f73ec9369f 363 SUPERFAMILY SSF55469 48 127 9.85E-11 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS05930 ffdd39635745abd0b98500f73ec9369f 363 Gene3D G3DSA:3.40.109.10 147 206 2.4E-11 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS05930 ffdd39635745abd0b98500f73ec9369f 363 Gene3D G3DSA:3.40.109.10 268 362 2.4E-11 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS05930 ffdd39635745abd0b98500f73ec9369f 363 SUPERFAMILY SSF55469 147 199 7.46E-8 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS05930 ffdd39635745abd0b98500f73ec9369f 363 SUPERFAMILY SSF55469 265 348 7.46E-8 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS05930 ffdd39635745abd0b98500f73ec9369f 363 Gene3D G3DSA:3.40.109.30 38 128 2.0E-14 T 26-04-2016 RGE_RS16835 c64473e78fedefe7a59f845c4f9a4fcd 225 PANTHER PTHR41164:SF1 5 218 5.0E-53 T 26-04-2016 RGE_RS16835 c64473e78fedefe7a59f845c4f9a4fcd 225 PANTHER PTHR41164 5 218 5.0E-53 T 26-04-2016 RGE_RS16835 c64473e78fedefe7a59f845c4f9a4fcd 225 Gene3D G3DSA:3.40.50.10070 65 128 1.6E-4 T 26-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RGE_RS16835 c64473e78fedefe7a59f845c4f9a4fcd 225 Pfam PF03783 Curli production assembly/transport component CsgG 43 215 1.3E-26 T 26-04-2016 IPR005534 Curli production assembly/transport component CsgG GO:0030288 RGE_RS16835 c64473e78fedefe7a59f845c4f9a4fcd 225 SUPERFAMILY SSF52964 62 143 3.79E-7 T 26-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RGE_RS12865 06c750fa435a0dd91736beaba46c55e0 246 Gene3D G3DSA:3.40.50.1820 168 241 5.2E-39 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12865 06c750fa435a0dd91736beaba46c55e0 246 Gene3D G3DSA:3.40.50.1820 4 136 5.2E-39 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12865 06c750fa435a0dd91736beaba46c55e0 246 SUPERFAMILY SSF53474 4 241 5.4E-44 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12865 06c750fa435a0dd91736beaba46c55e0 246 Pfam PF00326 Prolyl oligopeptidase family 51 241 2.7E-13 T 26-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RGE_RS12865 06c750fa435a0dd91736beaba46c55e0 246 PANTHER PTHR22946:SF0 4 232 1.8E-37 T 26-04-2016 RGE_RS12865 06c750fa435a0dd91736beaba46c55e0 246 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 84 114 - T 26-04-2016 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 RGE_RS12865 06c750fa435a0dd91736beaba46c55e0 246 PANTHER PTHR22946 4 232 1.8E-37 T 26-04-2016 RGE_RS05150 a6d9b3c92238d98062dfb31f0bc17795 174 PIRSF PIRSF005276 7 174 1.0E-48 T 26-04-2016 IPR007481 Stringent starvation protein B RGE_RS05150 a6d9b3c92238d98062dfb31f0bc17795 174 Pfam PF04386 Stringent starvation protein B 11 174 5.4E-39 T 26-04-2016 IPR007481 Stringent starvation protein B RGE_RS05150 a6d9b3c92238d98062dfb31f0bc17795 174 Gene3D G3DSA:2.30.30.220 8 110 3.1E-46 T 26-04-2016 IPR007481 Stringent starvation protein B RGE_RS05150 a6d9b3c92238d98062dfb31f0bc17795 174 SUPERFAMILY SSF101738 9 110 1.57E-44 T 26-04-2016 IPR007481 Stringent starvation protein B RGE_RS05150 a6d9b3c92238d98062dfb31f0bc17795 174 PANTHER PTHR37486 5 174 4.8E-53 T 26-04-2016 RGE_RS05150 a6d9b3c92238d98062dfb31f0bc17795 174 PANTHER PTHR37486:SF1 5 174 4.8E-53 T 26-04-2016 RGE_RS18725 8ec84f5700b615480e42a2e2a1a50fc4 280 PANTHER PTHR31118 211 276 2.6E-64 T 26-04-2016 RGE_RS18725 8ec84f5700b615480e42a2e2a1a50fc4 280 PANTHER PTHR31118 21 174 2.6E-64 T 26-04-2016 RGE_RS18725 8ec84f5700b615480e42a2e2a1a50fc4 280 Pfam PF04199 Putative cyclase 23 174 4.3E-35 T 26-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 RGE_RS18725 8ec84f5700b615480e42a2e2a1a50fc4 280 SUPERFAMILY SSF102198 19 175 1.96E-58 T 26-04-2016 RGE_RS18725 8ec84f5700b615480e42a2e2a1a50fc4 280 SUPERFAMILY SSF102198 212 267 1.96E-58 T 26-04-2016 RGE_RS18725 8ec84f5700b615480e42a2e2a1a50fc4 280 Gene3D G3DSA:3.50.30.50 212 269 3.6E-74 T 26-04-2016 RGE_RS18725 8ec84f5700b615480e42a2e2a1a50fc4 280 Gene3D G3DSA:3.50.30.50 20 175 3.6E-74 T 26-04-2016 RGE_RS18725 8ec84f5700b615480e42a2e2a1a50fc4 280 PANTHER PTHR31118:SF9 211 276 2.6E-64 T 26-04-2016 RGE_RS18725 8ec84f5700b615480e42a2e2a1a50fc4 280 PANTHER PTHR31118:SF9 21 174 2.6E-64 T 26-04-2016 RGE_RS21315 10884d94c3ce8a5fa32868ce9ac43b32 159 SUPERFAMILY SSF57716 119 157 7.27E-8 T 26-04-2016 RGE_RS21315 10884d94c3ce8a5fa32868ce9ac43b32 159 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 122 146 - T 26-04-2016 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RGE_RS21315 10884d94c3ce8a5fa32868ce9ac43b32 159 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 40 148 1.2E-43 T 26-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RGE_RS21315 10884d94c3ce8a5fa32868ce9ac43b32 159 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 117 151 7.7E-11 T 26-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RGE_RS21315 10884d94c3ce8a5fa32868ce9ac43b32 159 PANTHER PTHR33823:SF2 16 155 4.7E-36 T 26-04-2016 RGE_RS21315 10884d94c3ce8a5fa32868ce9ac43b32 159 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 36 158 27.761 T 26-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RGE_RS21315 10884d94c3ce8a5fa32868ce9ac43b32 159 PANTHER PTHR33823 16 155 4.7E-36 T 26-04-2016 RGE_RS21315 10884d94c3ce8a5fa32868ce9ac43b32 159 SUPERFAMILY SSF109635 26 118 8.5E-31 T 26-04-2016 RGE_RS13270 90e36c17952827d8cb1d3b9586e39328 173 PANTHER PTHR35089:SF1 7 172 3.9E-38 T 26-04-2016 RGE_RS13270 90e36c17952827d8cb1d3b9586e39328 173 PIRSF PIRSF002094 1 169 1.1E-51 T 26-04-2016 IPR005632 Chaperone protein Skp GO:0051082 RGE_RS13270 90e36c17952827d8cb1d3b9586e39328 173 SUPERFAMILY SSF111384 25 166 6.15E-37 T 26-04-2016 IPR024930 Skp domain RGE_RS13270 90e36c17952827d8cb1d3b9586e39328 173 PANTHER PTHR35089 7 172 3.9E-38 T 26-04-2016 RGE_RS13270 90e36c17952827d8cb1d3b9586e39328 173 Gene3D G3DSA:3.30.910.20 100 166 1.0E-32 T 26-04-2016 RGE_RS13270 90e36c17952827d8cb1d3b9586e39328 173 Gene3D G3DSA:3.30.910.20 15 62 1.0E-32 T 26-04-2016 RGE_RS13270 90e36c17952827d8cb1d3b9586e39328 173 Pfam PF03938 Outer membrane protein (OmpH-like) 11 165 3.9E-35 T 26-04-2016 IPR005632 Chaperone protein Skp GO:0051082 RGE_RS13270 90e36c17952827d8cb1d3b9586e39328 173 SMART SM00935 14 166 6.7E-57 T 26-04-2016 IPR005632 Chaperone protein Skp GO:0051082 RGE_RS10455 3e66a44e4599fd3b7b7ac97546f0a516 123 Pfam PF00085 Thioredoxin 13 73 2.7E-7 T 26-04-2016 IPR013766 Thioredoxin domain GO:0045454 RGE_RS10455 3e66a44e4599fd3b7b7ac97546f0a516 123 SUPERFAMILY SSF52833 9 100 5.95E-15 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS10455 3e66a44e4599fd3b7b7ac97546f0a516 123 Gene3D G3DSA:3.40.30.10 11 75 6.4E-12 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS04610 c27c40159c5386d20d9a256508a87333 137 Pfam PF01936 NYN domain 5 136 3.5E-23 T 26-04-2016 IPR021139 NYN domain, limkain-b1-type RGE_RS04610 c27c40159c5386d20d9a256508a87333 137 PANTHER PTHR35811 4 119 1.5E-14 T 26-04-2016 RGE_RS04610 c27c40159c5386d20d9a256508a87333 137 Gene3D G3DSA:3.40.50.1010 5 135 1.9E-20 T 26-04-2016 IPR029060 PIN domain-like RGE_RS04610 c27c40159c5386d20d9a256508a87333 137 PANTHER PTHR35811:SF1 4 119 1.5E-14 T 26-04-2016 RGE_RS19790 12088254827c80158d4cf0e918dfa13a 306 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 2 304 6.1E-114 T 26-04-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 RGE_RS19790 12088254827c80158d4cf0e918dfa13a 306 Gene3D G3DSA:3.60.15.10 1 305 2.7E-108 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS19790 12088254827c80158d4cf0e918dfa13a 306 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 306 161.443 T 26-04-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 RGE_RS19790 12088254827c80158d4cf0e918dfa13a 306 Pfam PF12706 Beta-lactamase superfamily domain 53 272 2.1E-41 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS19790 12088254827c80158d4cf0e918dfa13a 306 SUPERFAMILY SSF56281 1 304 1.81E-55 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS20560 b0585a0583cb44a86f330699d725f7ab 654 SMART SM00955 219 507 8.5E-67 T 26-04-2016 RGE_RS20560 b0585a0583cb44a86f330699d725f7ab 654 SUPERFAMILY SSF50249 209 557 2.28E-74 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS20560 b0585a0583cb44a86f330699d725f7ab 654 PANTHER PTHR23355 228 567 5.4E-41 T 26-04-2016 RGE_RS20560 b0585a0583cb44a86f330699d725f7ab 654 Pfam PF00773 RNB domain 225 457 3.1E-34 T 26-04-2016 RGE_RS20560 b0585a0583cb44a86f330699d725f7ab 654 Pfam PF00773 RNB domain 468 503 1.6E-9 T 26-04-2016 RGE_RS06615 4cf2590ef2f43ac79de2695b86919f04 193 Pfam PF01782 RimM N-terminal domain 24 111 1.2E-21 T 26-04-2016 IPR002676 RimM protein GO:0006364 RGE_RS06615 4cf2590ef2f43ac79de2695b86919f04 193 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 22 193 22.571 T 26-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RGE_RS06615 4cf2590ef2f43ac79de2695b86919f04 193 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 23 192 8.6E-40 T 26-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RGE_RS06615 4cf2590ef2f43ac79de2695b86919f04 193 SUPERFAMILY SSF50447 21 114 1.24E-16 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS06615 4cf2590ef2f43ac79de2695b86919f04 193 Gene3D G3DSA:2.40.30.60 17 114 1.7E-26 T 26-04-2016 IPR002676 RimM protein GO:0006364 RGE_RS06615 4cf2590ef2f43ac79de2695b86919f04 193 PANTHER PTHR33692 18 192 8.7E-35 T 26-04-2016 RGE_RS06615 4cf2590ef2f43ac79de2695b86919f04 193 Gene3D G3DSA:2.30.30.240 121 193 5.1E-21 T 26-04-2016 RGE_RS06615 4cf2590ef2f43ac79de2695b86919f04 193 SUPERFAMILY SSF50346 121 192 2.22E-15 T 26-04-2016 IPR011033 PRC-barrel-like RGE_RS09015 a9b258977da14fadc12e4893bcaed732 471 PANTHER PTHR24423 233 469 3.2E-37 T 26-04-2016 RGE_RS09015 a9b258977da14fadc12e4893bcaed732 471 Gene3D G3DSA:3.30.565.10 323 468 1.2E-27 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09015 a9b258977da14fadc12e4893bcaed732 471 SMART SM00387 359 468 1.7E-28 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09015 a9b258977da14fadc12e4893bcaed732 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 412 2.3E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS09015 a9b258977da14fadc12e4893bcaed732 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 2.3E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS09015 a9b258977da14fadc12e4893bcaed732 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 465 2.3E-10 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS09015 a9b258977da14fadc12e4893bcaed732 471 Gene3D G3DSA:1.10.287.130 242 308 5.4E-5 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS09015 a9b258977da14fadc12e4893bcaed732 471 SUPERFAMILY SSF47384 239 310 4.32E-6 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS09015 a9b258977da14fadc12e4893bcaed732 471 SUPERFAMILY SSF55874 344 465 2.88E-27 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS09015 a9b258977da14fadc12e4893bcaed732 471 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 466 5.6E-15 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS12020 bad7119968bc9b5235f8a28c1a060a5d 127 SUPERFAMILY SSF53146 2 104 2.35E-18 T 26-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RGE_RS12020 bad7119968bc9b5235f8a28c1a060a5d 127 Gene3D G3DSA:3.30.420.130 1 105 9.5E-13 T 26-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RGE_RS12020 bad7119968bc9b5235f8a28c1a060a5d 127 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 11 101 7.3E-5 T 26-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RGE_RS12615 51f7887b096e6d8a5bb54d93ac8ae9c8 690 Gene3D G3DSA:3.40.50.1820 35 44 3.7E-7 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12615 51f7887b096e6d8a5bb54d93ac8ae9c8 690 Gene3D G3DSA:3.40.50.1820 336 378 3.7E-7 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12615 51f7887b096e6d8a5bb54d93ac8ae9c8 690 Gene3D G3DSA:3.40.50.1820 165 259 3.7E-7 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12615 51f7887b096e6d8a5bb54d93ac8ae9c8 690 SUPERFAMILY SSF53474 167 255 4.06E-8 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12615 51f7887b096e6d8a5bb54d93ac8ae9c8 690 SUPERFAMILY SSF53474 35 46 4.06E-8 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12615 51f7887b096e6d8a5bb54d93ac8ae9c8 690 Pfam PF11678 Protein of unknown function (DUF3274) 555 610 6.3E-5 T 26-04-2016 IPR021692 Protein of unknown function DUF3274 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 PANTHER PTHR32089 187 504 8.4E-55 T 26-04-2016 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 381 410 5.8E-24 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 275 304 5.8E-24 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 429 458 5.8E-24 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 352 379 5.8E-24 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 PANTHER PTHR32089:SF63 187 504 8.4E-55 T 26-04-2016 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 Pfam PF08447 PAS fold 31 113 7.2E-15 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 114 3.2E-14 T 26-04-2016 IPR000014 PAS domain RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 Gene3D G3DSA:3.30.450.20 21 114 1.5E-26 T 26-04-2016 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 SMART SM00091 8 74 0.0088 T 26-04-2016 IPR000014 PAS domain RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 SUPERFAMILY SSF58104 221 502 2.62E-35 T 26-04-2016 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 315 500 6.2E-27 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 SMART SM00283 254 501 1.3E-21 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 Gene3D G3DSA:1.10.287.950 269 470 1.6E-29 T 26-04-2016 RGE_RS14725 6b60706e3568cc3cd6895a1458e24293 504 SUPERFAMILY SSF55785 21 114 2.26E-27 T 26-04-2016 IPR000014 PAS domain RGE_RS23270 d34a7ea7a1b970c2aaeff43b80cce895 433 Gene3D G3DSA:1.10.150.130 132 210 1.4E-5 T 26-04-2016 IPR023109 Integrase/recombinase, N-terminal RGE_RS23270 d34a7ea7a1b970c2aaeff43b80cce895 433 SUPERFAMILY SSF56349 133 414 5.3E-36 T 26-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RGE_RS23270 d34a7ea7a1b970c2aaeff43b80cce895 433 Pfam PF00589 Phage integrase family 250 405 1.1E-12 T 26-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS23270 d34a7ea7a1b970c2aaeff43b80cce895 433 Gene3D G3DSA:1.10.443.10 247 407 4.7E-29 T 26-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS23270 d34a7ea7a1b970c2aaeff43b80cce895 433 PANTHER PTHR30349:SF20 144 406 1.9E-17 T 26-04-2016 RGE_RS23270 d34a7ea7a1b970c2aaeff43b80cce895 433 PANTHER PTHR30349 144 406 1.9E-17 T 26-04-2016 RGE_RS18190 a0f9f51cd24462cfab8b390f63038144 280 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 118 138 - T 26-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RGE_RS18190 a0f9f51cd24462cfab8b390f63038144 280 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 12 279 55.848 T 26-04-2016 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 RGE_RS18190 a0f9f51cd24462cfab8b390f63038144 280 PANTHER PTHR11941 5 273 1.4E-189 T 26-04-2016 RGE_RS18190 a0f9f51cd24462cfab8b390f63038144 280 Gene3D G3DSA:3.90.226.10 20 217 1.7E-69 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS18190 a0f9f51cd24462cfab8b390f63038144 280 Pfam PF00378 Enoyl-CoA hydratase/isomerase 27 274 2.3E-82 T 26-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RGE_RS18190 a0f9f51cd24462cfab8b390f63038144 280 Gene3D G3DSA:1.10.12.10 219 268 4.2E-28 T 26-04-2016 IPR014748 Crontonase, C-terminal RGE_RS18190 a0f9f51cd24462cfab8b390f63038144 280 TIGRFAM TIGR01929 menB: naphthoate synthase 18 276 1.9E-140 T 26-04-2016 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 RGE_RS18190 a0f9f51cd24462cfab8b390f63038144 280 PANTHER PTHR11941:SF20 5 273 1.4E-189 T 26-04-2016 RGE_RS18190 a0f9f51cd24462cfab8b390f63038144 280 SUPERFAMILY SSF52096 9 275 1.07E-79 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS21290 6739fe8134c338e92ba30ac1bce47f6f 704 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 4 702 1.1E-196 T 26-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21290 6739fe8134c338e92ba30ac1bce47f6f 704 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 329 345 3.2E-31 T 26-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21290 6739fe8134c338e92ba30ac1bce47f6f 704 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 8 21 3.2E-31 T 26-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21290 6739fe8134c338e92ba30ac1bce47f6f 704 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 407 426 3.2E-31 T 26-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21290 6739fe8134c338e92ba30ac1bce47f6f 704 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 257 272 3.2E-31 T 26-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21290 6739fe8134c338e92ba30ac1bce47f6f 704 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 53 65 3.2E-31 T 26-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21290 6739fe8134c338e92ba30ac1bce47f6f 704 SUPERFAMILY SSF109604 350 511 1.88E-13 T 26-04-2016 RGE_RS21290 6739fe8134c338e92ba30ac1bce47f6f 704 Pfam PF05746 DALR anticodon binding domain 596 694 5.0E-7 T 26-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RGE_RS21290 6739fe8134c338e92ba30ac1bce47f6f 704 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 4 702 23.609 T 26-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21290 6739fe8134c338e92ba30ac1bce47f6f 704 PANTHER PTHR30075:SF2 4 704 1.9E-249 T 26-04-2016 RGE_RS21290 6739fe8134c338e92ba30ac1bce47f6f 704 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 7 565 5.9E-197 T 26-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RGE_RS21290 6739fe8134c338e92ba30ac1bce47f6f 704 PANTHER PTHR30075 4 704 1.9E-249 T 26-04-2016 RGE_RS20610 43c1d241020b7c8df204f4abf6795e99 301 Gene3D G3DSA:3.40.1190.20 3 298 3.9E-56 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS20610 43c1d241020b7c8df204f4abf6795e99 301 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 47 71 - T 26-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RGE_RS20610 43c1d241020b7c8df204f4abf6795e99 301 PANTHER PTHR10584:SF15 1 299 1.3E-80 T 26-04-2016 RGE_RS20610 43c1d241020b7c8df204f4abf6795e99 301 PANTHER PTHR10584 1 299 1.3E-80 T 26-04-2016 RGE_RS20610 43c1d241020b7c8df204f4abf6795e99 301 Pfam PF00294 pfkB family carbohydrate kinase 35 291 3.6E-40 T 26-04-2016 IPR011611 Carbohydrate kinase PfkB RGE_RS20610 43c1d241020b7c8df204f4abf6795e99 301 SUPERFAMILY SSF53613 3 295 2.65E-63 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS22810 3a27244d5772f1160db63a0045d0af61 308 Pfam PF01435 Peptidase family M48 126 282 4.3E-30 T 26-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RGE_RS22810 3a27244d5772f1160db63a0045d0af61 308 PANTHER PTHR22726 67 295 1.2E-60 T 26-04-2016 RGE_RS22810 3a27244d5772f1160db63a0045d0af61 308 Gene3D G3DSA:3.30.2010.10 121 185 1.2E-12 T 26-04-2016 RGE_RS18120 31e2205bd5e3d096c3db6a60c64a96b3 139 SUPERFAMILY SSF143100 3 64 2.49E-15 T 26-04-2016 RGE_RS18120 31e2205bd5e3d096c3db6a60c64a96b3 139 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 4 67 3.1E-8 T 26-04-2016 IPR031807 HicB-like antitoxin of toxin-antitoxin system RGE_RS18120 31e2205bd5e3d096c3db6a60c64a96b3 139 Gene3D G3DSA:1.10.10.10 83 113 4.1E-4 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07285 a0bcd907c41106ba63c4491b9ee985bf 196 Pfam PF16036 Chalcone isomerase-like 25 192 2.4E-50 T 26-04-2016 IPR016087 Chalcone isomerase GO:0016872 RGE_RS07285 a0bcd907c41106ba63c4491b9ee985bf 196 SUPERFAMILY SSF54626 22 192 5.23E-22 T 26-04-2016 IPR016087 Chalcone isomerase GO:0016872 RGE_RS02160 52c391c5c0c18a7e5012d5a9a636f8f1 316 Pfam PF00535 Glycosyl transferase family 2 7 119 1.1E-31 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS02160 52c391c5c0c18a7e5012d5a9a636f8f1 316 PANTHER PTHR22916 1 311 5.5E-57 T 26-04-2016 RGE_RS02160 52c391c5c0c18a7e5012d5a9a636f8f1 316 SUPERFAMILY SSF53448 4 218 7.22E-56 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS02160 52c391c5c0c18a7e5012d5a9a636f8f1 316 Gene3D G3DSA:3.90.550.10 4 220 6.7E-56 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS20850 1cd0dcd400cd8c118431c680fd7728dc 385 PANTHER PTHR11601:SF20 3 373 4.2E-127 T 26-04-2016 RGE_RS20850 1cd0dcd400cd8c118431c680fd7728dc 385 SUPERFAMILY SSF53383 3 372 4.79E-94 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS20850 1cd0dcd400cd8c118431c680fd7728dc 385 PIRSF PIRSF005572 1 378 1.9E-115 T 26-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RGE_RS20850 1cd0dcd400cd8c118431c680fd7728dc 385 Gene3D G3DSA:3.90.1150.10 246 369 1.9E-33 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS20850 1cd0dcd400cd8c118431c680fd7728dc 385 Pfam PF00266 Aminotransferase class-V 3 363 6.6E-67 T 26-04-2016 IPR000192 Aminotransferase class V domain RGE_RS20850 1cd0dcd400cd8c118431c680fd7728dc 385 PANTHER PTHR11601 3 373 4.2E-127 T 26-04-2016 RGE_RS20850 1cd0dcd400cd8c118431c680fd7728dc 385 Gene3D G3DSA:3.40.640.10 15 245 1.3E-74 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS09635 c8ae736de2e072ccfde09b6cab7d045c 141 SUPERFAMILY SSF140566 6 129 4.58E-22 T 26-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 RGE_RS09635 c8ae736de2e072ccfde09b6cab7d045c 141 Gene3D G3DSA:1.20.58.300 8 130 2.8E-23 T 26-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 RGE_RS09635 c8ae736de2e072ccfde09b6cab7d045c 141 Pfam PF05130 FlgN protein 9 126 9.7E-15 T 26-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 300 1.6E-81 T 26-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 PANTHER PTHR11741 1 303 5.8E-105 T 26-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 Hamap MF_00050 Elongation factor Ts [tsf]. 1 300 74.786 T 26-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 Gene3D G3DSA:3.30.479.20 57 151 6.2E-19 T 26-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 Gene3D G3DSA:1.10.8.10 3 55 2.8E-21 T 26-04-2016 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 SUPERFAMILY SSF54713 153 300 2.35E-41 T 26-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 Gene3D G3DSA:3.30.479.20 154 188 2.5E-26 T 26-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 Gene3D G3DSA:3.30.479.20 247 282 2.5E-26 T 26-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 SUPERFAMILY SSF46934 4 56 3.57E-13 T 26-04-2016 IPR009060 UBA-like GO:0005515 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 Pfam PF00889 Elongation factor TS 71 283 4.3E-63 T 26-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 26-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 Gene3D G3DSA:1.10.286.20 194 246 1.5E-8 T 26-04-2016 RGE_RS13310 cbd09a5a81c77a76c30e8e266ff1de1f 306 SUPERFAMILY SSF54713 56 148 9.55E-23 T 26-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RGE_RS15320 9cfc0ec15fa69435534a8d9f73a397e1 353 Gene3D G3DSA:3.40.50.300 3 236 3.0E-78 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15320 9cfc0ec15fa69435534a8d9f73a397e1 353 Pfam PF00005 ABC transporter 19 161 2.8E-33 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS15320 9cfc0ec15fa69435534a8d9f73a397e1 353 PANTHER PTHR24220 5 247 1.0E-118 T 26-04-2016 RGE_RS15320 9cfc0ec15fa69435534a8d9f73a397e1 353 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS15320 9cfc0ec15fa69435534a8d9f73a397e1 353 Pfam PF08402 TOBE domain 272 347 3.9E-10 T 26-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RGE_RS15320 9cfc0ec15fa69435534a8d9f73a397e1 353 SMART SM00382 28 211 8.1E-21 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS15320 9cfc0ec15fa69435534a8d9f73a397e1 353 SUPERFAMILY SSF52540 4 240 1.27E-85 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15320 9cfc0ec15fa69435534a8d9f73a397e1 353 SUPERFAMILY SSF50331 245 347 6.03E-13 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS15320 9cfc0ec15fa69435534a8d9f73a397e1 353 Gene3D G3DSA:2.40.50.140 274 341 7.8E-4 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS15320 9cfc0ec15fa69435534a8d9f73a397e1 353 PANTHER PTHR24220:SF150 5 247 1.0E-118 T 26-04-2016 RGE_RS15320 9cfc0ec15fa69435534a8d9f73a397e1 353 TIGRFAM TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein 2 347 2.7E-138 T 26-04-2016 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 GO:0005524 RGE_RS15805 9fac718b5c9615009a0e6e116044ea74 336 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 32 287 1.6E-77 T 26-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RGE_RS15805 9fac718b5c9615009a0e6e116044ea74 336 PANTHER PTHR33376 2 334 2.4E-79 T 26-04-2016 RGE_RS15805 9fac718b5c9615009a0e6e116044ea74 336 PANTHER PTHR33376:SF2 2 334 2.4E-79 T 26-04-2016 RGE_RS15805 9fac718b5c9615009a0e6e116044ea74 336 PIRSF PIRSF006470 1 331 1.9E-111 T 26-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RGE_RS15805 9fac718b5c9615009a0e6e116044ea74 336 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 309 4.6E-86 T 26-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RGE_RS08310 3420fe5c343797b2831bb6fa6bbbff37 480 PANTHER PTHR30288 2 479 3.3E-62 T 26-04-2016 RGE_RS08310 3420fe5c343797b2831bb6fa6bbbff37 480 Pfam PF07196 Flagellin hook IN motif 142 195 1.6E-10 T 26-04-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 RGE_RS08310 3420fe5c343797b2831bb6fa6bbbff37 480 PANTHER PTHR30288:SF0 2 479 3.3E-62 T 26-04-2016 RGE_RS08310 3420fe5c343797b2831bb6fa6bbbff37 480 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 106 9.4E-21 T 26-04-2016 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 RGE_RS08310 3420fe5c343797b2831bb6fa6bbbff37 480 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 238 462 7.7E-47 T 26-04-2016 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 RGE_RS03680 07f599371daa22c8f6bac00c9d6e7e85 68 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 49 3.5E-7 T 26-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain RGE_RS17420 3571192b409bd9f3db16e6cc15fe145d 178 PANTHER PTHR34300 13 168 8.1E-42 T 26-04-2016 RGE_RS17420 3571192b409bd9f3db16e6cc15fe145d 178 Pfam PF02592 Putative vitamin uptake transporter 80 162 2.1E-18 T 26-04-2016 IPR003744 Protein of unknown function DUF165 RGE_RS17420 3571192b409bd9f3db16e6cc15fe145d 178 Pfam PF02592 Putative vitamin uptake transporter 36 78 8.6E-8 T 26-04-2016 IPR003744 Protein of unknown function DUF165 RGE_RS17420 3571192b409bd9f3db16e6cc15fe145d 178 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 82 160 1.4E-14 T 26-04-2016 IPR003744 Protein of unknown function DUF165 RGE_RS17420 3571192b409bd9f3db16e6cc15fe145d 178 PANTHER PTHR34300:SF1 13 168 8.1E-42 T 26-04-2016 RGE_RS15325 88bd4ebb041c8d5d33ab88374006d357 341 TIGRFAM TIGR03261 phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein 11 338 2.4E-149 T 26-04-2016 IPR017663 ABC transport system, 1-aminoethylphosphonate-binding protein, putative RGE_RS15325 88bd4ebb041c8d5d33ab88374006d357 341 Gene3D G3DSA:3.40.190.10 131 265 1.6E-39 T 26-04-2016 RGE_RS15325 88bd4ebb041c8d5d33ab88374006d357 341 PANTHER PTHR30006 28 341 9.0E-118 T 26-04-2016 RGE_RS15325 88bd4ebb041c8d5d33ab88374006d357 341 Gene3D G3DSA:3.40.190.10 2 125 9.2E-45 T 26-04-2016 RGE_RS15325 88bd4ebb041c8d5d33ab88374006d357 341 Gene3D G3DSA:3.40.190.10 266 324 9.2E-45 T 26-04-2016 RGE_RS15325 88bd4ebb041c8d5d33ab88374006d357 341 SUPERFAMILY SSF53850 23 331 6.92E-69 T 26-04-2016 RGE_RS15325 88bd4ebb041c8d5d33ab88374006d357 341 Pfam PF13343 Bacterial extracellular solute-binding protein 76 292 3.8E-28 T 26-04-2016 RGE_RS15325 88bd4ebb041c8d5d33ab88374006d357 341 PANTHER PTHR30006:SF9 28 341 9.0E-118 T 26-04-2016 RGE_RS15325 88bd4ebb041c8d5d33ab88374006d357 341 PIRSF PIRSF002825 2 334 2.0E-87 T 26-04-2016 IPR026045 Ferric binding protein RGE_RS07350 b2fdad1248af802d9aa43373b8a0b1dc 221 Pfam PF13521 AAA domain 9 168 2.1E-22 T 26-04-2016 RGE_RS07350 b2fdad1248af802d9aa43373b8a0b1dc 221 SUPERFAMILY SSF52540 7 138 5.3E-7 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07350 b2fdad1248af802d9aa43373b8a0b1dc 221 PANTHER PTHR37512 8 191 1.9E-12 T 26-04-2016 RGE_RS07350 b2fdad1248af802d9aa43373b8a0b1dc 221 Gene3D G3DSA:3.40.50.300 8 173 4.3E-30 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00335 a28ed9be55a65a6e7d1a4527646142c3 400 Gene3D G3DSA:3.30.70.260 322 391 6.0E-12 T 26-04-2016 RGE_RS00335 a28ed9be55a65a6e7d1a4527646142c3 400 PANTHER PTHR10314:SF17 4 354 3.0E-143 T 26-04-2016 RGE_RS00335 a28ed9be55a65a6e7d1a4527646142c3 400 PANTHER PTHR10314 4 354 3.0E-143 T 26-04-2016 RGE_RS00335 a28ed9be55a65a6e7d1a4527646142c3 400 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 302 3.5E-77 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS00335 a28ed9be55a65a6e7d1a4527646142c3 400 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 23 396 3.4E-128 T 26-04-2016 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00052 RGE_RS00335 a28ed9be55a65a6e7d1a4527646142c3 400 Gene3D G3DSA:3.40.50.1100 71 319 4.1E-74 T 26-04-2016 RGE_RS00335 a28ed9be55a65a6e7d1a4527646142c3 400 Pfam PF01842 ACT domain 326 383 1.4E-8 T 26-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RGE_RS00335 a28ed9be55a65a6e7d1a4527646142c3 400 SUPERFAMILY SSF53686 6 350 5.76E-95 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS08520 462875bd221e4035d667f99fc297796c 227 PRINTS PR01008 Flagellar L-ring protein signature 68 80 2.6E-15 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS08520 462875bd221e4035d667f99fc297796c 227 PRINTS PR01008 Flagellar L-ring protein signature 203 217 2.6E-15 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS08520 462875bd221e4035d667f99fc297796c 227 PRINTS PR01008 Flagellar L-ring protein signature 166 182 2.6E-15 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS08520 462875bd221e4035d667f99fc297796c 227 PRINTS PR01008 Flagellar L-ring protein signature 140 155 2.6E-15 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS08520 462875bd221e4035d667f99fc297796c 227 PRINTS PR01008 Flagellar L-ring protein signature 187 201 2.6E-15 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS08520 462875bd221e4035d667f99fc297796c 227 PANTHER PTHR34933 49 227 6.8E-42 T 26-04-2016 RGE_RS08520 462875bd221e4035d667f99fc297796c 227 Pfam PF02107 Flagellar L-ring protein 47 226 2.0E-52 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS08520 462875bd221e4035d667f99fc297796c 227 Hamap MF_00415 Flagellar L-ring protein [flgH]. 3 224 22.211 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS22990 389569dcacd59297ef53faeadb4fc70a 105 SUPERFAMILY SSF47413 8 72 1.77E-14 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS22990 389569dcacd59297ef53faeadb4fc70a 105 Pfam PF13560 Helix-turn-helix domain 10 66 1.5E-11 T 26-04-2016 RGE_RS22990 389569dcacd59297ef53faeadb4fc70a 105 SMART SM00530 14 70 4.8E-8 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS22990 389569dcacd59297ef53faeadb4fc70a 105 Gene3D G3DSA:1.10.260.40 9 68 6.5E-12 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS05430 0ff811f0404c7e33939b32c1390cc75c 149 Pfam PF00582 Universal stress protein family 2 136 1.3E-21 T 26-04-2016 IPR006016 UspA GO:0006950 RGE_RS05430 0ff811f0404c7e33939b32c1390cc75c 149 SUPERFAMILY SSF52402 1 140 1.38E-23 T 26-04-2016 RGE_RS05430 0ff811f0404c7e33939b32c1390cc75c 149 Gene3D G3DSA:3.40.50.620 2 139 1.7E-23 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS05430 0ff811f0404c7e33939b32c1390cc75c 149 PANTHER PTHR31964:SF26 1 149 5.2E-17 T 26-04-2016 RGE_RS05430 0ff811f0404c7e33939b32c1390cc75c 149 PANTHER PTHR31964 1 149 5.2E-17 T 26-04-2016 RGE_RS12135 ff596be5e77b1e72239fe2b5f7bbf9e7 385 PANTHER PTHR12526 2 374 1.6E-84 T 26-04-2016 RGE_RS12135 ff596be5e77b1e72239fe2b5f7bbf9e7 385 Gene3D G3DSA:3.40.50.2000 174 349 9.2E-25 T 26-04-2016 RGE_RS12135 ff596be5e77b1e72239fe2b5f7bbf9e7 385 PANTHER PTHR12526:SF363 2 374 1.6E-84 T 26-04-2016 RGE_RS12135 ff596be5e77b1e72239fe2b5f7bbf9e7 385 Pfam PF00534 Glycosyl transferases group 1 190 349 2.5E-23 T 26-04-2016 IPR001296 Glycosyl transferase, family 1 RGE_RS12135 ff596be5e77b1e72239fe2b5f7bbf9e7 385 Pfam PF13439 Glycosyltransferase Family 4 14 178 2.8E-19 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS12135 ff596be5e77b1e72239fe2b5f7bbf9e7 385 SUPERFAMILY SSF53756 3 367 2.42E-68 T 26-04-2016 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 12 94 3.1E-38 T 26-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 94 273 1.4E-89 T 26-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 Hamap MF_00008 Thymidylate synthase [thyA]. 10 273 43.706 T 26-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 Gene3D G3DSA:3.30.572.10 11 273 1.6E-130 T 26-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 SUPERFAMILY SSF55831 8 273 2.49E-128 T 26-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 PANTHER PTHR11548 12 273 4.0E-186 T 26-04-2016 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 PRINTS PR00108 Thymidylate synthase family signature 150 165 7.6E-46 T 26-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 PRINTS PR00108 Thymidylate synthase family signature 168 194 7.6E-46 T 26-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 PRINTS PR00108 Thymidylate synthase family signature 206 223 7.6E-46 T 26-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 PRINTS PR00108 Thymidylate synthase family signature 124 143 7.6E-46 T 26-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 PRINTS PR00108 Thymidylate synthase family signature 51 72 7.6E-46 T 26-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 ProSitePatterns PS00091 Thymidylate synthase active site. 135 163 - T 26-04-2016 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RGE_RS07110 5c7df360f4dedeee92037ffb3da2f2d2 273 Pfam PF00303 Thymidylate synthase 12 273 4.0E-120 T 26-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RGE_RS15440 dc732b00a2ed8e841ec2ae798eae2049 119 SUPERFAMILY SSF54736 34 117 3.77E-30 T 26-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RGE_RS15440 dc732b00a2ed8e841ec2ae798eae2049 119 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 11 114 27.151 T 26-04-2016 IPR022935 ATP-dependent Clp protease adaptor protein ClpS RGE_RS15440 dc732b00a2ed8e841ec2ae798eae2049 119 PANTHER PTHR33473 24 117 4.8E-31 T 26-04-2016 RGE_RS15440 dc732b00a2ed8e841ec2ae798eae2049 119 Gene3D G3DSA:3.30.1390.10 24 118 2.3E-39 T 26-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RGE_RS15440 dc732b00a2ed8e841ec2ae798eae2049 119 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 36 114 6.1E-33 T 26-04-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 RGE_RS01485 a72d1dd2e9be88ad221f077b6baccecf 203 SUPERFAMILY SSF54626 27 194 6.54E-14 T 26-04-2016 IPR016087 Chalcone isomerase GO:0016872 RGE_RS01485 a72d1dd2e9be88ad221f077b6baccecf 203 Pfam PF16036 Chalcone isomerase-like 26 193 2.2E-49 T 26-04-2016 IPR016087 Chalcone isomerase GO:0016872 RGE_RS18520 d3c863d47f954a4b8c705ef835c67d2e 383 Pfam PF07690 Major Facilitator Superfamily 23 320 5.2E-11 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS18520 d3c863d47f954a4b8c705ef835c67d2e 383 PANTHER PTHR23514:SF13 6 383 1.9E-84 T 26-04-2016 RGE_RS18520 d3c863d47f954a4b8c705ef835c67d2e 383 SUPERFAMILY SSF103473 10 381 7.32E-31 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS18520 d3c863d47f954a4b8c705ef835c67d2e 383 PANTHER PTHR23514 6 383 1.9E-84 T 26-04-2016 RGE_RS18520 d3c863d47f954a4b8c705ef835c67d2e 383 Gene3D G3DSA:1.20.1250.20 23 191 7.2E-8 T 26-04-2016 RGE_RS18520 d3c863d47f954a4b8c705ef835c67d2e 383 Gene3D G3DSA:1.20.1250.20 209 377 1.7E-5 T 26-04-2016 RGE_RS05635 ae66f14d9a4afe5f4082886dde062b45 146 PANTHER PTHR12302 7 146 6.9E-28 T 26-04-2016 RGE_RS05635 ae66f14d9a4afe5f4082886dde062b45 146 Pfam PF00565 Staphylococcal nuclease homologue 32 131 5.9E-15 T 26-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RGE_RS05635 ae66f14d9a4afe5f4082886dde062b45 146 SMART SM00318 5 131 4.6E-19 T 26-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RGE_RS05635 ae66f14d9a4afe5f4082886dde062b45 146 SUPERFAMILY SSF50199 6 138 1.44E-30 T 26-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RGE_RS05635 ae66f14d9a4afe5f4082886dde062b45 146 Gene3D G3DSA:2.40.50.90 7 137 5.3E-24 T 26-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RGE_RS17350 01f6b83305847931acd26d8b75270df1 556 PANTHER PTHR30003 4 555 6.6E-305 T 26-04-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 RGE_RS17350 01f6b83305847931acd26d8b75270df1 556 Pfam PF02652 L-lactate permease 17 545 2.2E-215 T 26-04-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 RGE_RS17350 01f6b83305847931acd26d8b75270df1 556 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 7 547 1.3E-222 T 26-04-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 RGE_RS17350 01f6b83305847931acd26d8b75270df1 556 PANTHER PTHR30003:SF0 4 555 6.6E-305 T 26-04-2016 RGE_RS07790 e7a24cf046633dc91182783ed656476f 369 Gene3D G3DSA:3.60.150.10 9 354 1.2E-150 T 26-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS07790 e7a24cf046633dc91182783ed656476f 369 SUPERFAMILY SSF103263 4 353 7.33E-140 T 26-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS07790 e7a24cf046633dc91182783ed656476f 369 PIRSF PIRSF001456 3 360 4.0E-131 T 26-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS07790 e7a24cf046633dc91182783ed656476f 369 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 26-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS07790 e7a24cf046633dc91182783ed656476f 369 Pfam PF01264 Chorismate synthase 10 345 1.9E-131 T 26-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS07790 e7a24cf046633dc91182783ed656476f 369 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 6.0E-133 T 26-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS07790 e7a24cf046633dc91182783ed656476f 369 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 26-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS07790 e7a24cf046633dc91182783ed656476f 369 PANTHER PTHR21085 2 356 6.6E-195 T 26-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS07790 e7a24cf046633dc91182783ed656476f 369 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 26-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS07790 e7a24cf046633dc91182783ed656476f 369 Hamap MF_00300 Chorismate synthase [aroC]. 10 354 35.371 T 26-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RGE_RS19925 790235642e2941b0400795a9fad67deb 114 PANTHER PTHR33238 36 112 1.0E-11 T 26-04-2016 RGE_RS19925 790235642e2941b0400795a9fad67deb 114 SMART SM00899 37 113 3.2E-15 T 26-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RGE_RS19925 790235642e2941b0400795a9fad67deb 114 Pfam PF04023 FeoA domain 38 113 1.8E-13 T 26-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RGE_RS19925 790235642e2941b0400795a9fad67deb 114 SUPERFAMILY SSF50037 57 113 1.01E-11 T 26-04-2016 IPR008988 Transcriptional repressor, C-terminal RGE_RS08145 9b190a432b34b74ff7f23c7048d0c05f 331 TIGRFAM TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I 5 330 2.5E-154 T 26-04-2016 IPR011775 Magnesium chelatase, ATPase subunit I GO:0005524|GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00668 RGE_RS08145 9b190a432b34b74ff7f23c7048d0c05f 331 PANTHER PTHR32039 5 331 1.9E-130 T 26-04-2016 RGE_RS08145 9b190a432b34b74ff7f23c7048d0c05f 331 PANTHER PTHR32039:SF10 5 331 1.9E-130 T 26-04-2016 RGE_RS08145 9b190a432b34b74ff7f23c7048d0c05f 331 Pfam PF01078 Magnesium chelatase, subunit ChlI 108 177 5.1E-7 T 26-04-2016 IPR000523 Magnesium chelatase ChlI domain RGE_RS08145 9b190a432b34b74ff7f23c7048d0c05f 331 SUPERFAMILY SSF52540 5 318 1.14E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08145 9b190a432b34b74ff7f23c7048d0c05f 331 Gene3D G3DSA:1.10.8.80 242 330 8.2E-27 T 26-04-2016 RGE_RS08145 9b190a432b34b74ff7f23c7048d0c05f 331 Gene3D G3DSA:3.40.50.300 5 196 4.9E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08145 9b190a432b34b74ff7f23c7048d0c05f 331 SMART SM00382 28 200 1.0E-8 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS07470 33c00ef488078723c9d1e3f1595ee152 186 PANTHER PTHR38101:SF1 3 179 4.3E-36 T 26-04-2016 RGE_RS07470 33c00ef488078723c9d1e3f1595ee152 186 Pfam PF04751 Protein of unknown function (DUF615) 26 179 1.3E-48 T 26-04-2016 IPR006839 Ribosome-associated, YjgA RGE_RS07470 33c00ef488078723c9d1e3f1595ee152 186 Gene3D G3DSA:1.10.60.30 37 105 8.4E-26 T 26-04-2016 IPR023153 PSPTO4464-like domain RGE_RS07470 33c00ef488078723c9d1e3f1595ee152 186 Gene3D G3DSA:1.10.60.30 112 182 3.1E-23 T 26-04-2016 IPR023153 PSPTO4464-like domain RGE_RS07470 33c00ef488078723c9d1e3f1595ee152 186 PIRSF PIRSF016183 14 185 3.3E-53 T 26-04-2016 IPR006839 Ribosome-associated, YjgA RGE_RS07470 33c00ef488078723c9d1e3f1595ee152 186 SUPERFAMILY SSF158710 37 181 1.26E-41 T 26-04-2016 RGE_RS07470 33c00ef488078723c9d1e3f1595ee152 186 PANTHER PTHR38101 3 179 4.3E-36 T 26-04-2016 RGE_RS06630 891e1f565dbfc17b118265d7bbcde413 223 PANTHER PTHR12992 1 216 4.1E-50 T 26-04-2016 RGE_RS06630 891e1f565dbfc17b118265d7bbcde413 223 Gene3D G3DSA:3.90.79.10 51 219 1.2E-39 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS06630 891e1f565dbfc17b118265d7bbcde413 223 SUPERFAMILY SSF55811 54 213 1.62E-38 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS06630 891e1f565dbfc17b118265d7bbcde413 223 Pfam PF00293 NUDIX domain 63 140 4.0E-14 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS21605 eda5d2a8a1ade931470750a5ab5feb01 142 PANTHER PTHR30093 1 74 2.1E-13 T 26-04-2016 RGE_RS21605 eda5d2a8a1ade931470750a5ab5feb01 142 Pfam PF13633 Prokaryotic N-terminal methylation site 11 36 1.5E-12 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS21605 eda5d2a8a1ade931470750a5ab5feb01 142 Gene3D G3DSA:3.30.700.10 13 133 1.9E-19 T 26-04-2016 RGE_RS21605 eda5d2a8a1ade931470750a5ab5feb01 142 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 33 2.3E-9 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS21605 eda5d2a8a1ade931470750a5ab5feb01 142 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS21605 eda5d2a8a1ade931470750a5ab5feb01 142 SUPERFAMILY SSF54523 13 137 3.87E-21 T 26-04-2016 RGE_RS08340 e80acdd80b2ea32a868350632ebce003 214 SUPERFAMILY SSF53335 26 168 1.81E-20 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS08340 e80acdd80b2ea32a868350632ebce003 214 Gene3D G3DSA:3.40.50.150 24 192 3.4E-21 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS08340 e80acdd80b2ea32a868350632ebce003 214 Pfam PF13578 Methyltransferase domain 55 164 2.6E-17 T 26-04-2016 RGE_RS14865 d3acf03bd0f5a87228d37c812567385a 319 Pfam PF16220 Domain of unknown function (DUF4880) 12 52 4.3E-12 T 26-04-2016 IPR032623 FecR, N-terminal RGE_RS14865 d3acf03bd0f5a87228d37c812567385a 319 Pfam PF04773 FecR protein 112 202 3.3E-16 T 26-04-2016 IPR006860 FecR protein RGE_RS14865 d3acf03bd0f5a87228d37c812567385a 319 PANTHER PTHR30273 4 318 5.6E-95 T 26-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RGE_RS14865 d3acf03bd0f5a87228d37c812567385a 319 PANTHER PTHR30273:SF3 4 318 5.6E-95 T 26-04-2016 RGE_RS14865 d3acf03bd0f5a87228d37c812567385a 319 PIRSF PIRSF018266 2 315 4.2E-87 T 26-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RGE_RS22900 0fa0617bfec1bd821ff4207353168243 212 Pfam PF01914 MarC family integral membrane protein 5 204 6.6E-52 T 26-04-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RGE_RS22900 0fa0617bfec1bd821ff4207353168243 212 PANTHER PTHR33508:SF1 1 210 1.5E-59 T 26-04-2016 RGE_RS22900 0fa0617bfec1bd821ff4207353168243 212 PANTHER PTHR33508 1 210 1.5E-59 T 26-04-2016 RGE_RS22900 0fa0617bfec1bd821ff4207353168243 212 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 200 1.9E-49 T 26-04-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RGE_RS06440 6f6cb68e1e9ba49101b4422562770a19 234 SUPERFAMILY SSF53474 8 204 1.8E-31 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS06440 6f6cb68e1e9ba49101b4422562770a19 234 PANTHER PTHR10655 6 201 5.5E-26 T 26-04-2016 RGE_RS06440 6f6cb68e1e9ba49101b4422562770a19 234 Pfam PF02230 Phospholipase/Carboxylesterase 12 198 2.8E-30 T 26-04-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 RGE_RS06440 6f6cb68e1e9ba49101b4422562770a19 234 Gene3D G3DSA:3.40.50.1820 9 204 6.1E-37 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS06440 6f6cb68e1e9ba49101b4422562770a19 234 PANTHER PTHR10655:SF17 6 201 5.5E-26 T 26-04-2016 RGE_RS06575 055e229c3ee00ebc94820a6459f09af3 522 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 13 510 34.648 T 26-04-2016 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 RGE_RS06575 055e229c3ee00ebc94820a6459f09af3 522 Gene3D G3DSA:1.10.3090.10 212 444 1.5E-41 T 26-04-2016 RGE_RS06575 055e229c3ee00ebc94820a6459f09af3 522 Pfam PF12626 Polymerase A arginine-rich C-terminus 357 508 9.4E-31 T 26-04-2016 IPR025866 Polymerase A arginine-rich C-terminal domain RGE_RS06575 055e229c3ee00ebc94820a6459f09af3 522 Gene3D G3DSA:3.30.460.10 46 211 3.8E-44 T 26-04-2016 RGE_RS06575 055e229c3ee00ebc94820a6459f09af3 522 SUPERFAMILY SSF81891 210 449 1.02E-44 T 26-04-2016 RGE_RS06575 055e229c3ee00ebc94820a6459f09af3 522 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 33 458 1.7E-132 T 26-04-2016 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 RGE_RS06575 055e229c3ee00ebc94820a6459f09af3 522 PANTHER PTHR13734:SF47 33 347 3.1E-98 T 26-04-2016 RGE_RS06575 055e229c3ee00ebc94820a6459f09af3 522 PANTHER PTHR13734 33 347 3.1E-98 T 26-04-2016 RGE_RS06575 055e229c3ee00ebc94820a6459f09af3 522 Pfam PF01743 Poly A polymerase head domain 63 212 3.0E-31 T 26-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 RGE_RS06575 055e229c3ee00ebc94820a6459f09af3 522 SUPERFAMILY SSF81301 38 130 4.25E-34 T 26-04-2016 RGE_RS06575 055e229c3ee00ebc94820a6459f09af3 522 SUPERFAMILY SSF81301 157 206 4.25E-34 T 26-04-2016 RGE_RS06575 055e229c3ee00ebc94820a6459f09af3 522 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 239 301 8.6E-19 T 26-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 PRINTS PR00094 Adenylate kinase signature 4 17 1.77E-35 T 26-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 PRINTS PR00094 Adenylate kinase signature 156 171 1.77E-35 T 26-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 PRINTS PR00094 Adenylate kinase signature 173 187 1.77E-35 T 26-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 PRINTS PR00094 Adenylate kinase signature 81 97 1.77E-35 T 26-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 PRINTS PR00094 Adenylate kinase signature 32 46 1.77E-35 T 26-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 TIGRFAM TIGR01351 adk: adenylate kinase 2 186 1.7E-72 T 26-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 Gene3D G3DSA:3.40.50.300 1 212 1.2E-80 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 Pfam PF00406 Adenylate kinase 5 184 2.2E-57 T 26-04-2016 RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 Hamap MF_00235 Adenylate kinase [adk]. 1 217 52.562 T 26-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.0E-16 T 26-04-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 26-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 SUPERFAMILY SSF52540 1 210 1.52E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15590 d60cbbaa9b9924cf035072f0f678dccf 218 PANTHER PTHR23359 1 218 1.4E-106 T 26-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RGE_RS07185 aa1118e3efa45391e897e4b047426f4c 664 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 467 664 2.4E-25 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS07185 aa1118e3efa45391e897e4b047426f4c 664 Pfam PF00672 HAMP domain 319 386 3.6E-15 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS07185 aa1118e3efa45391e897e4b047426f4c 664 SUPERFAMILY SSF158472 338 387 1.44E-9 T 26-04-2016 RGE_RS07185 aa1118e3efa45391e897e4b047426f4c 664 SMART SM00304 338 390 2.1E-14 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS07185 aa1118e3efa45391e897e4b047426f4c 664 SMART SM00331 440 663 2.2E-6 T 26-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RGE_RS07185 aa1118e3efa45391e897e4b047426f4c 664 PANTHER PTHR32089 1 664 9.2E-134 T 26-04-2016 RGE_RS07185 aa1118e3efa45391e897e4b047426f4c 664 PANTHER PTHR32089:SF27 1 664 9.2E-134 T 26-04-2016 RGE_RS07185 aa1118e3efa45391e897e4b047426f4c 664 Gene3D G3DSA:3.30.450.20 164 305 1.4E-7 T 26-04-2016 RGE_RS21675 ce33191049a93a4784ebb4e7d7fcb931 330 PANTHER PTHR38103 1 303 2.9E-75 T 26-04-2016 RGE_RS21675 ce33191049a93a4784ebb4e7d7fcb931 330 PANTHER PTHR38103:SF1 1 303 2.9E-75 T 26-04-2016 RGE_RS21675 ce33191049a93a4784ebb4e7d7fcb931 330 Pfam PF04381 Putative exonuclease, RdgC 2 297 5.7E-102 T 26-04-2016 IPR007476 Putative exonuclease, RdgC GO:0006310 RGE_RS03730 278ffd96136afa924b34216c73b2b26f 124 SUPERFAMILY SSF89360 17 110 1.35E-32 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS03730 278ffd96136afa924b34216c73b2b26f 124 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 20 124 1.8E-39 T 26-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RGE_RS03730 278ffd96136afa924b34216c73b2b26f 124 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 105 122 - T 26-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site RGE_RS03730 278ffd96136afa924b34216c73b2b26f 124 Pfam PF01521 Iron-sulphur cluster biosynthesis 19 119 1.1E-21 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS03730 278ffd96136afa924b34216c73b2b26f 124 Gene3D G3DSA:2.60.300.12 15 110 6.5E-34 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS03730 278ffd96136afa924b34216c73b2b26f 124 PANTHER PTHR10072 19 124 1.2E-48 T 26-04-2016 RGE_RS03730 278ffd96136afa924b34216c73b2b26f 124 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 124 37.224 T 26-04-2016 IPR023063 FeS cluster insertion protein ErpA GO:0016226 RGE_RS20200 e84d09fd0df11d3fa079029d3a4673e5 626 SUPERFAMILY SSF51735 298 563 7.67E-57 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20200 e84d09fd0df11d3fa079029d3a4673e5 626 Gene3D G3DSA:3.90.25.10 483 564 9.1E-8 T 26-04-2016 RGE_RS20200 e84d09fd0df11d3fa079029d3a4673e5 626 PANTHER PTHR10366:SF256 299 569 2.9E-116 T 26-04-2016 RGE_RS20200 e84d09fd0df11d3fa079029d3a4673e5 626 SUPERFAMILY SSF51735 160 287 2.28E-14 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20200 e84d09fd0df11d3fa079029d3a4673e5 626 PANTHER PTHR10366 299 569 2.9E-116 T 26-04-2016 RGE_RS20200 e84d09fd0df11d3fa079029d3a4673e5 626 Gene3D G3DSA:3.40.50.720 156 257 1.9E-13 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20200 e84d09fd0df11d3fa079029d3a4673e5 626 Pfam PF02719 Polysaccharide biosynthesis protein 300 581 5.0E-114 T 26-04-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RGE_RS20200 e84d09fd0df11d3fa079029d3a4673e5 626 Pfam PF13727 CoA-binding domain 90 236 6.4E-12 T 26-04-2016 RGE_RS20200 e84d09fd0df11d3fa079029d3a4673e5 626 Gene3D G3DSA:3.40.50.720 299 482 3.1E-43 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05400 4467ceeb550d4790cf74b5aa38d3cef7 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 131 303 8.8E-30 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05400 4467ceeb550d4790cf74b5aa38d3cef7 304 PANTHER PTHR30465:SF10 9 303 3.5E-116 T 26-04-2016 RGE_RS05400 4467ceeb550d4790cf74b5aa38d3cef7 304 Gene3D G3DSA:1.10.3720.10 88 299 3.3E-28 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05400 4467ceeb550d4790cf74b5aa38d3cef7 304 PANTHER PTHR30465 9 303 3.5E-116 T 26-04-2016 RGE_RS05400 4467ceeb550d4790cf74b5aa38d3cef7 304 SUPERFAMILY SSF161098 92 302 3.4E-28 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS05400 4467ceeb550d4790cf74b5aa38d3cef7 304 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 16 68 2.6E-11 T 26-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RGE_RS00735 eb5186f9643ecb696ce661c2405bb283 415 Gene3D G3DSA:1.20.1250.20 9 194 5.8E-23 T 26-04-2016 RGE_RS00735 eb5186f9643ecb696ce661c2405bb283 415 SUPERFAMILY SSF103473 7 402 6.41E-53 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS00735 eb5186f9643ecb696ce661c2405bb283 415 Gene3D G3DSA:1.20.1250.20 212 402 1.1E-13 T 26-04-2016 RGE_RS00735 eb5186f9643ecb696ce661c2405bb283 415 Pfam PF07690 Major Facilitator Superfamily 26 359 2.4E-41 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS00735 eb5186f9643ecb696ce661c2405bb283 415 PANTHER PTHR11360 2 390 1.9E-49 T 26-04-2016 RGE_RS17355 2cedac8bcdc932be1ea41c425d70407b 636 Pfam PF13667 ThiC-associated domain 17 84 1.8E-22 T 26-04-2016 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 RGE_RS17355 2cedac8bcdc932be1ea41c425d70407b 636 PANTHER PTHR30557:SF1 125 155 0.0 T 26-04-2016 RGE_RS17355 2cedac8bcdc932be1ea41c425d70407b 636 PANTHER PTHR30557:SF1 8 83 0.0 T 26-04-2016 RGE_RS17355 2cedac8bcdc932be1ea41c425d70407b 636 PANTHER PTHR30557:SF1 187 625 0.0 T 26-04-2016 RGE_RS17355 2cedac8bcdc932be1ea41c425d70407b 636 PANTHER PTHR30557 125 155 0.0 T 26-04-2016 RGE_RS17355 2cedac8bcdc932be1ea41c425d70407b 636 PANTHER PTHR30557 8 83 0.0 T 26-04-2016 RGE_RS17355 2cedac8bcdc932be1ea41c425d70407b 636 PANTHER PTHR30557 187 625 0.0 T 26-04-2016 RGE_RS17355 2cedac8bcdc932be1ea41c425d70407b 636 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 132 587 1.8E-206 T 26-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 RGE_RS17355 2cedac8bcdc932be1ea41c425d70407b 636 Pfam PF01964 Radical SAM ThiC family 133 584 8.6E-196 T 26-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 RGE_RS17355 2cedac8bcdc932be1ea41c425d70407b 636 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 132 590 55.663 T 26-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 RGE_RS13830 106ecdb40cae894017578f8278e6baf4 345 Gene3D G3DSA:3.40.50.2000 129 320 2.8E-27 T 26-04-2016 RGE_RS13830 106ecdb40cae894017578f8278e6baf4 345 Pfam PF00534 Glycosyl transferases group 1 154 320 1.6E-31 T 26-04-2016 IPR001296 Glycosyl transferase, family 1 RGE_RS13830 106ecdb40cae894017578f8278e6baf4 345 PANTHER PTHR12526 1 345 5.2E-48 T 26-04-2016 RGE_RS13830 106ecdb40cae894017578f8278e6baf4 345 SUPERFAMILY SSF53756 1 340 1.32E-63 T 26-04-2016 RGE_RS04075 ebebeef45f87915efe6783a67af0768c 162 PANTHER PTHR33371 1 146 1.4E-41 T 26-04-2016 RGE_RS04075 ebebeef45f87915efe6783a67af0768c 162 Pfam PF02470 MlaD protein 40 117 1.8E-22 T 26-04-2016 IPR003399 Mce/MlaD RGE_RS04075 ebebeef45f87915efe6783a67af0768c 162 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 4 147 3.6E-58 T 26-04-2016 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 RGE_RS22400 61471008336c442a864bf65e84ee71ef 405 Gene3D G3DSA:3.50.50.60 8 162 7.8E-23 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS22400 61471008336c442a864bf65e84ee71ef 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 151 169 1.0E-6 T 26-04-2016 RGE_RS22400 61471008336c442a864bf65e84ee71ef 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 1.0E-6 T 26-04-2016 RGE_RS22400 61471008336c442a864bf65e84ee71ef 405 PANTHER PTHR10617 9 325 2.2E-39 T 26-04-2016 RGE_RS22400 61471008336c442a864bf65e84ee71ef 405 PANTHER PTHR10617:SF101 9 325 2.2E-39 T 26-04-2016 RGE_RS22400 61471008336c442a864bf65e84ee71ef 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 1.9E-6 T 26-04-2016 RGE_RS22400 61471008336c442a864bf65e84ee71ef 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 154 163 1.9E-6 T 26-04-2016 RGE_RS22400 61471008336c442a864bf65e84ee71ef 405 SUPERFAMILY SSF51905 10 172 1.01E-38 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS22400 61471008336c442a864bf65e84ee71ef 405 SUPERFAMILY SSF51905 284 373 1.01E-38 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS22400 61471008336c442a864bf65e84ee71ef 405 Pfam PF01494 FAD binding domain 10 160 4.5E-14 T 26-04-2016 IPR002938 FAD-binding domain GO:0071949 RGE_RS22400 61471008336c442a864bf65e84ee71ef 405 Gene3D G3DSA:3.30.9.10 168 330 4.8E-26 T 26-04-2016 RGE_RS02620 ea3dab8f471cd181bc40162d11a308eb 309 Gene3D G3DSA:3.40.50.10750 119 276 6.4E-44 T 26-04-2016 RGE_RS02620 ea3dab8f471cd181bc40162d11a308eb 309 PANTHER PTHR23406:SF1 215 280 8.6E-12 T 26-04-2016 RGE_RS02620 ea3dab8f471cd181bc40162d11a308eb 309 Pfam PF01515 Phosphate acetyl/butaryl transferase 84 300 1.1E-34 T 26-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RGE_RS02620 ea3dab8f471cd181bc40162d11a308eb 309 SUPERFAMILY SSF53659 21 303 7.4E-55 T 26-04-2016 RGE_RS02620 ea3dab8f471cd181bc40162d11a308eb 309 PIRSF PIRSF000428 6 307 6.3E-66 T 26-04-2016 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RGE_RS02620 ea3dab8f471cd181bc40162d11a308eb 309 PANTHER PTHR23406 215 280 8.6E-12 T 26-04-2016 RGE_RS08825 25462df45da65ff7b218c4e43785291b 565 Pfam PF15611 EH_Signature domain 39 463 4.1E-97 T 26-04-2016 IPR028943 EH signature domain RGE_RS06890 4adf6b102448199e5c8b177f698dc244 320 SUPERFAMILY SSF52374 17 180 4.74E-34 T 26-04-2016 RGE_RS06890 4adf6b102448199e5c8b177f698dc244 320 Gene3D G3DSA:2.40.30.30 193 317 1.7E-29 T 26-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 RGE_RS06890 4adf6b102448199e5c8b177f698dc244 320 PANTHER PTHR22749:SF0 1 315 2.4E-103 T 26-04-2016 RGE_RS06890 4adf6b102448199e5c8b177f698dc244 320 SUPERFAMILY SSF82114 179 316 8.72E-32 T 26-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 RGE_RS06890 4adf6b102448199e5c8b177f698dc244 320 Pfam PF06574 FAD synthetase 15 171 3.1E-51 T 26-04-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 RGE_RS06890 4adf6b102448199e5c8b177f698dc244 320 Pfam PF01687 Riboflavin kinase 189 315 3.8E-28 T 26-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 RGE_RS06890 4adf6b102448199e5c8b177f698dc244 320 PIRSF PIRSF004491 1 320 1.4E-88 T 26-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 RGE_RS06890 4adf6b102448199e5c8b177f698dc244 320 SMART SM00904 188 316 4.2E-44 T 26-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 RGE_RS06890 4adf6b102448199e5c8b177f698dc244 320 Gene3D G3DSA:3.40.50.620 2 192 2.4E-63 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS06890 4adf6b102448199e5c8b177f698dc244 320 PANTHER PTHR22749 1 315 2.4E-103 T 26-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 RGE_RS06890 4adf6b102448199e5c8b177f698dc244 320 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 315 4.3E-76 T 26-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 RGE_RS17900 9e816d1fd9b2d3e6cf6125d38b284850 73 Pfam PF11390 NADH-dependant formate dehydrogenase delta subunit FdsD 5 65 5.3E-27 T 26-04-2016 IPR021074 Formate dehydrogenase, delta subunit RGE_RS17710 8b18fe24714b3ee305ddbf36af478202 396 SUPERFAMILY SSF54675 2 135 5.0E-36 T 26-04-2016 RGE_RS17710 8b18fe24714b3ee305ddbf36af478202 396 PIRSF PIRSF000484 1 389 1.9E-69 T 26-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RGE_RS17710 8b18fe24714b3ee305ddbf36af478202 396 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 4 392 5.4E-147 T 26-04-2016 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RGE_RS17710 8b18fe24714b3ee305ddbf36af478202 396 SUPERFAMILY SSF51690 119 392 1.16E-88 T 26-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RGE_RS17710 8b18fe24714b3ee305ddbf36af478202 396 Gene3D G3DSA:3.20.140.10 3 393 5.3E-135 T 26-04-2016 RGE_RS17710 8b18fe24714b3ee305ddbf36af478202 396 PANTHER PTHR11098:SF16 3 393 3.7E-159 T 26-04-2016 RGE_RS17710 8b18fe24714b3ee305ddbf36af478202 396 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 1 395 44.454 T 26-04-2016 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RGE_RS17710 8b18fe24714b3ee305ddbf36af478202 396 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 168 393 9.5E-75 T 26-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RGE_RS17710 8b18fe24714b3ee305ddbf36af478202 396 PANTHER PTHR11098 3 393 3.7E-159 T 26-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 RGE_RS19975 22ad37e77235fa742e9fa6246d051aaf 219 PANTHER PTHR18901 4 215 3.2E-45 T 26-04-2016 RGE_RS19975 22ad37e77235fa742e9fa6246d051aaf 219 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 185 1.8E-30 T 26-04-2016 IPR023214 HAD-like domain RGE_RS19975 22ad37e77235fa742e9fa6246d051aaf 219 Gene3D G3DSA:3.40.50.1000 75 217 3.5E-39 T 26-04-2016 IPR023214 HAD-like domain RGE_RS19975 22ad37e77235fa742e9fa6246d051aaf 219 Gene3D G3DSA:1.10.150.240 21 74 1.1E-6 T 26-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RGE_RS19975 22ad37e77235fa742e9fa6246d051aaf 219 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 94 179 1.6E-9 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS19975 22ad37e77235fa742e9fa6246d051aaf 219 PANTHER PTHR18901:SF40 4 215 3.2E-45 T 26-04-2016 RGE_RS19975 22ad37e77235fa742e9fa6246d051aaf 219 SUPERFAMILY SSF56784 5 217 1.71E-56 T 26-04-2016 IPR023214 HAD-like domain RGE_RS15265 35a9c1b991cb1bf575c9a5899473422c 373 SUPERFAMILY SSF111369 51 136 2.75E-8 T 26-04-2016 RGE_RS15265 35a9c1b991cb1bf575c9a5899473422c 373 SUPERFAMILY SSF111369 187 290 1.57E-10 T 26-04-2016 RGE_RS15265 35a9c1b991cb1bf575c9a5899473422c 373 PANTHER PTHR30386 10 371 6.2E-138 T 26-04-2016 RGE_RS15265 35a9c1b991cb1bf575c9a5899473422c 373 Gene3D G3DSA:2.40.50.100 57 89 3.3E-20 T 26-04-2016 RGE_RS15265 35a9c1b991cb1bf575c9a5899473422c 373 Gene3D G3DSA:2.40.50.100 238 271 3.3E-20 T 26-04-2016 RGE_RS15265 35a9c1b991cb1bf575c9a5899473422c 373 PANTHER PTHR30386:SF6 10 371 6.2E-138 T 26-04-2016 RGE_RS15265 35a9c1b991cb1bf575c9a5899473422c 373 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 164 305 2.3E-14 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS15265 35a9c1b991cb1bf575c9a5899473422c 373 Pfam PF13533 Biotin-lipoyl like 57 103 2.6E-12 T 26-04-2016 RGE_RS15265 35a9c1b991cb1bf575c9a5899473422c 373 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 252 273 8.0E-10 T 26-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RGE_RS15265 35a9c1b991cb1bf575c9a5899473422c 373 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 358 373 8.0E-10 T 26-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RGE_RS15265 35a9c1b991cb1bf575c9a5899473422c 373 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 284 308 8.0E-10 T 26-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RGE_RS15265 35a9c1b991cb1bf575c9a5899473422c 373 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 67 87 8.0E-10 T 26-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RGE_RS08615 19f645bbd31b37fb947f51bf3a049c86 252 PANTHER PTHR30352 15 251 1.2E-94 T 26-04-2016 RGE_RS08615 19f645bbd31b37fb947f51bf3a049c86 252 Pfam PF13353 4Fe-4S single cluster domain 26 139 2.3E-17 T 26-04-2016 RGE_RS08615 19f645bbd31b37fb947f51bf3a049c86 252 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 17 246 1.6E-93 T 26-04-2016 IPR012838 Pyruvate formate-lyase activating enzyme GO:0043365|GO:0055114 RGE_RS08615 19f645bbd31b37fb947f51bf3a049c86 252 SUPERFAMILY SSF102114 33 222 1.7E-31 T 26-04-2016 RGE_RS08615 19f645bbd31b37fb947f51bf3a049c86 252 PIRSF PIRSF004869 14 252 3.9E-28 T 26-04-2016 IPR016431 Pyruvate-formate lyase-activating enzyme, predicted RGE_RS08615 19f645bbd31b37fb947f51bf3a049c86 252 Pfam PF04055 Radical SAM superfamily 35 189 9.7E-28 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS08615 19f645bbd31b37fb947f51bf3a049c86 252 ProSitePatterns PS01087 Radical activating enzymes signature. 28 49 - T 26-04-2016 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 RGE_RS08615 19f645bbd31b37fb947f51bf3a049c86 252 PANTHER PTHR30352:SF9 15 251 1.2E-94 T 26-04-2016 RGE_RS08615 19f645bbd31b37fb947f51bf3a049c86 252 Gene3D G3DSA:3.80.30.10 80 251 2.2E-62 T 26-04-2016 RGE_RS11705 8ac580873815b73d7e5f0b141ce8f3da 289 PANTHER PTHR18895:SF66 1 287 8.0E-87 T 26-04-2016 RGE_RS11705 8ac580873815b73d7e5f0b141ce8f3da 289 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 2 281 3.3E-96 T 26-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 RGE_RS11705 8ac580873815b73d7e5f0b141ce8f3da 289 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 2 275 1.0E-52 T 26-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RGE_RS11705 8ac580873815b73d7e5f0b141ce8f3da 289 SUPERFAMILY SSF53335 4 254 1.19E-46 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS11705 8ac580873815b73d7e5f0b141ce8f3da 289 Gene3D G3DSA:3.40.50.150 95 258 2.1E-46 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS11705 8ac580873815b73d7e5f0b141ce8f3da 289 PIRSF PIRSF037167 1 288 6.0E-96 T 26-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 RGE_RS11705 8ac580873815b73d7e5f0b141ce8f3da 289 Pfam PF05175 Methyltransferase small domain 120 202 6.4E-16 T 26-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RGE_RS11705 8ac580873815b73d7e5f0b141ce8f3da 289 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 191 197 - T 26-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RGE_RS11705 8ac580873815b73d7e5f0b141ce8f3da 289 PANTHER PTHR18895 1 287 8.0E-87 T 26-04-2016 RGE_RS11705 8ac580873815b73d7e5f0b141ce8f3da 289 Gene3D G3DSA:1.10.8.10 1 93 1.4E-9 T 26-04-2016 RGE_RS15970 b74e409258c3da788f3bc95c9b26b04c 196 PANTHER PTHR34846:SF1 40 190 3.1E-37 T 26-04-2016 RGE_RS15970 b74e409258c3da788f3bc95c9b26b04c 196 PANTHER PTHR34846 40 190 3.1E-37 T 26-04-2016 RGE_RS15970 b74e409258c3da788f3bc95c9b26b04c 196 SUPERFAMILY SSF69118 33 194 1.09E-26 T 26-04-2016 IPR029032 AhpD-like RGE_RS15970 b74e409258c3da788f3bc95c9b26b04c 196 Gene3D G3DSA:1.20.1290.10 65 193 2.0E-19 T 26-04-2016 IPR029032 AhpD-like RGE_RS15575 2106bab71578a9b38b61ba17fcf0d548 339 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 24 331 7.7E-87 T 26-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RGE_RS15575 2106bab71578a9b38b61ba17fcf0d548 339 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 10 334 34.387 T 26-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RGE_RS15575 2106bab71578a9b38b61ba17fcf0d548 339 Gene3D G3DSA:3.40.50.300 49 151 2.4E-7 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15575 2106bab71578a9b38b61ba17fcf0d548 339 PANTHER PTHR30160 47 302 3.4E-58 T 26-04-2016 RGE_RS15575 2106bab71578a9b38b61ba17fcf0d548 339 SUPERFAMILY SSF52540 51 167 4.39E-13 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15575 2106bab71578a9b38b61ba17fcf0d548 339 PANTHER PTHR30160:SF13 47 302 3.4E-58 T 26-04-2016 RGE_RS15575 2106bab71578a9b38b61ba17fcf0d548 339 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 33 302 5.0E-56 T 26-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RGE_RS00320 fe7d9dd8d2719a2dc16b24a8188ff483 470 Gene3D G3DSA:1.10.45.10 428 467 5.8E-15 T 26-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RGE_RS00320 fe7d9dd8d2719a2dc16b24a8188ff483 470 PANTHER PTHR11748:SF97 16 468 2.8E-193 T 26-04-2016 RGE_RS00320 fe7d9dd8d2719a2dc16b24a8188ff483 470 PANTHER PTHR11748 16 468 2.8E-193 T 26-04-2016 RGE_RS00320 fe7d9dd8d2719a2dc16b24a8188ff483 470 Pfam PF01565 FAD binding domain 56 190 5.2E-37 T 26-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RGE_RS00320 fe7d9dd8d2719a2dc16b24a8188ff483 470 SUPERFAMILY SSF55103 230 469 9.32E-69 T 26-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RGE_RS00320 fe7d9dd8d2719a2dc16b24a8188ff483 470 Gene3D G3DSA:3.30.465.10 111 227 8.2E-43 T 26-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RGE_RS00320 fe7d9dd8d2719a2dc16b24a8188ff483 470 Pfam PF02913 FAD linked oxidases, C-terminal domain 227 467 2.9E-67 T 26-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RGE_RS00320 fe7d9dd8d2719a2dc16b24a8188ff483 470 Gene3D G3DSA:3.30.43.10 14 110 2.9E-25 T 26-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RGE_RS00320 fe7d9dd8d2719a2dc16b24a8188ff483 470 SUPERFAMILY SSF56176 17 227 3.5E-64 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS07315 a9688c139e765660d4d46d985895745c 199 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 192 7.6E-33 T 26-04-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RGE_RS07315 a9688c139e765660d4d46d985895745c 199 PANTHER PTHR33508:SF4 1 196 2.1E-60 T 26-04-2016 RGE_RS07315 a9688c139e765660d4d46d985895745c 199 PANTHER PTHR33508 1 196 2.1E-60 T 26-04-2016 RGE_RS07315 a9688c139e765660d4d46d985895745c 199 Pfam PF01914 MarC family integral membrane protein 5 195 5.7E-48 T 26-04-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RGE_RS16185 a41ed5e8e3f0ba784c500a743a94b5d0 226 PANTHER PTHR10920 1 218 6.3E-85 T 26-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RGE_RS16185 a41ed5e8e3f0ba784c500a743a94b5d0 226 PANTHER PTHR10920:SF20 1 218 6.3E-85 T 26-04-2016 RGE_RS16185 a41ed5e8e3f0ba784c500a743a94b5d0 226 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 11 215 30.31 T 26-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RGE_RS16185 a41ed5e8e3f0ba784c500a743a94b5d0 226 Pfam PF01728 FtsJ-like methyltransferase 31 212 1.7E-52 T 26-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RGE_RS16185 a41ed5e8e3f0ba784c500a743a94b5d0 226 Gene3D G3DSA:3.40.50.150 1 216 7.9E-67 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16185 a41ed5e8e3f0ba784c500a743a94b5d0 226 SUPERFAMILY SSF53335 30 215 3.71E-35 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16185 a41ed5e8e3f0ba784c500a743a94b5d0 226 PIRSF PIRSF005461 1 224 4.0E-68 T 26-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RGE_RS00910 bc4665247777ae55cb328b279852868f 126 Pfam PF09350 Domain of unknown function (DUF1992) 23 86 1.7E-13 T 26-04-2016 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain RGE_RS03205 f5690e2c4226b2c09c9fcfdfab9b6cee 260 Gene3D G3DSA:3.90.226.10 3 256 1.4E-57 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS03205 f5690e2c4226b2c09c9fcfdfab9b6cee 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 254 3.1E-38 T 26-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RGE_RS03205 f5690e2c4226b2c09c9fcfdfab9b6cee 260 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 103 123 - T 26-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RGE_RS03205 f5690e2c4226b2c09c9fcfdfab9b6cee 260 SUPERFAMILY SSF52096 3 257 1.32E-60 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS03205 f5690e2c4226b2c09c9fcfdfab9b6cee 260 PANTHER PTHR11941 3 258 5.4E-54 T 26-04-2016 RGE_RS18185 67f7adc0f882a49e94c07903d2cfd0d0 441 Pfam PF13193 AMP-binding enzyme C-terminal domain 349 423 1.6E-17 T 26-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RGE_RS18185 67f7adc0f882a49e94c07903d2cfd0d0 441 SUPERFAMILY SSF56801 12 434 8.11E-96 T 26-04-2016 RGE_RS18185 67f7adc0f882a49e94c07903d2cfd0d0 441 Gene3D G3DSA:3.30.300.30 336 431 2.7E-28 T 26-04-2016 RGE_RS18185 67f7adc0f882a49e94c07903d2cfd0d0 441 Pfam PF00501 AMP-binding enzyme 105 340 6.8E-39 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS18185 67f7adc0f882a49e94c07903d2cfd0d0 441 ProSitePatterns PS00455 Putative AMP-binding domain signature. 111 122 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS18185 67f7adc0f882a49e94c07903d2cfd0d0 441 Gene3D G3DSA:3.40.50.980 13 100 4.4E-5 T 26-04-2016 RGE_RS18185 67f7adc0f882a49e94c07903d2cfd0d0 441 PANTHER PTHR24095 98 429 1.4E-75 T 26-04-2016 RGE_RS18185 67f7adc0f882a49e94c07903d2cfd0d0 441 PANTHER PTHR24095 28 44 1.4E-75 T 26-04-2016 RGE_RS18185 67f7adc0f882a49e94c07903d2cfd0d0 441 Gene3D G3DSA:2.30.38.10 290 333 1.4E-7 T 26-04-2016 RGE_RS18185 67f7adc0f882a49e94c07903d2cfd0d0 441 Gene3D G3DSA:3.40.50.980 105 267 9.2E-30 T 26-04-2016 RGE_RS19330 56b5160218f8e5a0423d6a482fae2b7e 223 Pfam PF00005 ABC transporter 26 171 1.4E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS19330 56b5160218f8e5a0423d6a482fae2b7e 223 SUPERFAMILY SSF52540 26 221 1.41E-49 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19330 56b5160218f8e5a0423d6a482fae2b7e 223 PANTHER PTHR24220 6 222 3.5E-63 T 26-04-2016 RGE_RS19330 56b5160218f8e5a0423d6a482fae2b7e 223 SMART SM00382 31 219 7.9E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS19330 56b5160218f8e5a0423d6a482fae2b7e 223 Gene3D G3DSA:3.40.50.300 5 222 1.2E-55 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS14575 f535dc54bd62dc140108d529f8d9eed6 407 PANTHER PTHR14552 1 109 1.8E-37 T 26-04-2016 RGE_RS14575 f535dc54bd62dc140108d529f8d9eed6 407 SUPERFAMILY SSF101386 1 104 7.41E-32 T 26-04-2016 RGE_RS14575 f535dc54bd62dc140108d529f8d9eed6 407 Gene3D G3DSA:1.10.287.1080 1 94 1.9E-23 T 26-04-2016 RGE_RS14575 f535dc54bd62dc140108d529f8d9eed6 407 Pfam PF12643 MazG-like family 34 102 5.5E-9 T 26-04-2016 IPR025984 MazG-like domain KEGG: 00240+3.6.1.12 RGE_RS04245 28f2e9da0aae3a05fb24c9e70652bf88 150 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 73 89 3.4E-34 T 26-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RGE_RS04245 28f2e9da0aae3a05fb24c9e70652bf88 150 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 100 122 3.4E-34 T 26-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RGE_RS04245 28f2e9da0aae3a05fb24c9e70652bf88 150 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 8 29 3.4E-34 T 26-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RGE_RS04245 28f2e9da0aae3a05fb24c9e70652bf88 150 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 37 61 3.4E-34 T 26-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RGE_RS04245 28f2e9da0aae3a05fb24c9e70652bf88 150 Pfam PF01467 Cytidylyltransferase-like 2 121 2.5E-12 T 26-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RGE_RS04245 28f2e9da0aae3a05fb24c9e70652bf88 150 Gene3D G3DSA:3.40.50.620 1 145 2.4E-42 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS04245 28f2e9da0aae3a05fb24c9e70652bf88 150 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 1 146 26.832 T 26-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RGE_RS04245 28f2e9da0aae3a05fb24c9e70652bf88 150 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 1 144 1.2E-46 T 26-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RGE_RS04245 28f2e9da0aae3a05fb24c9e70652bf88 150 SUPERFAMILY SSF52374 1 143 5.33E-35 T 26-04-2016 RGE_RS04245 28f2e9da0aae3a05fb24c9e70652bf88 150 PANTHER PTHR21342 1 147 1.0E-59 T 26-04-2016 RGE_RS04245 28f2e9da0aae3a05fb24c9e70652bf88 150 PANTHER PTHR21342:SF1 1 147 1.0E-59 T 26-04-2016 RGE_RS11350 aed86fe2ac66f7fc534765f4b1e3fd4f 308 SUPERFAMILY SSF53300 40 163 5.78E-5 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS08185 dd274f87de90c434a69db0366387372e 370 PANTHER PTHR21266 9 366 2.5E-38 T 26-04-2016 RGE_RS08185 dd274f87de90c434a69db0366387372e 370 SUPERFAMILY SSF50022 10 142 2.1E-32 T 26-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RGE_RS08185 dd274f87de90c434a69db0366387372e 370 Pfam PF00355 Rieske [2Fe-2S] domain 44 123 7.5E-12 T 26-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RGE_RS08185 dd274f87de90c434a69db0366387372e 370 PANTHER PTHR21266:SF2 9 366 2.5E-38 T 26-04-2016 RGE_RS08185 dd274f87de90c434a69db0366387372e 370 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 167 367 5.2E-33 T 26-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 RGE_RS08185 dd274f87de90c434a69db0366387372e 370 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 25 50 1.8E-7 T 26-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 RGE_RS08185 dd274f87de90c434a69db0366387372e 370 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 96 116 1.8E-7 T 26-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 RGE_RS08185 dd274f87de90c434a69db0366387372e 370 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 75 95 1.8E-7 T 26-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 RGE_RS08185 dd274f87de90c434a69db0366387372e 370 SUPERFAMILY SSF55961 162 366 6.44E-43 T 26-04-2016 RGE_RS08185 dd274f87de90c434a69db0366387372e 370 Gene3D G3DSA:3.90.380.10 175 363 3.6E-8 T 26-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 RGE_RS08185 dd274f87de90c434a69db0366387372e 370 Gene3D G3DSA:2.102.10.10 43 147 3.5E-24 T 26-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RGE_RS21670 2046289070ce70f77a6d066845364b9c 200 Pfam PF01694 Rhomboid family 41 185 1.8E-29 T 26-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RGE_RS21670 2046289070ce70f77a6d066845364b9c 200 Gene3D G3DSA:1.20.1540.10 6 185 5.5E-32 T 26-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RGE_RS21670 2046289070ce70f77a6d066845364b9c 200 PANTHER PTHR22936 11 183 1.5E-25 T 26-04-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 RGE_RS21670 2046289070ce70f77a6d066845364b9c 200 SUPERFAMILY SSF144091 5 186 1.31E-34 T 26-04-2016 RGE_RS17320 690c9714f34fdea620b00cc55ce0086c 322 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 160 172 - T 26-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RGE_RS17320 690c9714f34fdea620b00cc55ce0086c 322 SMART SM00220 18 293 1.2E-39 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS17320 690c9714f34fdea620b00cc55ce0086c 322 Gene3D G3DSA:1.10.510.10 101 295 5.5E-42 T 26-04-2016 RGE_RS17320 690c9714f34fdea620b00cc55ce0086c 322 Pfam PF00069 Protein kinase domain 18 289 1.0E-39 T 26-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RGE_RS17320 690c9714f34fdea620b00cc55ce0086c 322 PANTHER PTHR24362 8 55 7.9E-54 T 26-04-2016 RGE_RS17320 690c9714f34fdea620b00cc55ce0086c 322 PANTHER PTHR24362 75 294 7.9E-54 T 26-04-2016 RGE_RS17320 690c9714f34fdea620b00cc55ce0086c 322 Gene3D G3DSA:3.30.200.20 12 100 1.9E-16 T 26-04-2016 RGE_RS17320 690c9714f34fdea620b00cc55ce0086c 322 SUPERFAMILY SSF56112 15 292 2.16E-57 T 26-04-2016 IPR011009 Protein kinase-like domain RGE_RS04725 e0b97953437683116ab07f9851682cd7 444 PANTHER PTHR11972 43 443 4.0E-50 T 26-04-2016 RGE_RS04725 e0b97953437683116ab07f9851682cd7 444 Gene3D G3DSA:3.40.50.80 310 437 1.7E-16 T 26-04-2016 RGE_RS04725 e0b97953437683116ab07f9851682cd7 444 SUPERFAMILY SSF52343 322 441 1.96E-21 T 26-04-2016 RGE_RS04725 e0b97953437683116ab07f9851682cd7 444 Gene3D G3DSA:2.40.30.10 224 309 8.5E-14 T 26-04-2016 RGE_RS04725 e0b97953437683116ab07f9851682cd7 444 PRINTS PR00409 Phthalate dioxygenase reductase family signature 305 319 3.3E-5 T 26-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RGE_RS04725 e0b97953437683116ab07f9851682cd7 444 PRINTS PR00409 Phthalate dioxygenase reductase family signature 327 346 3.3E-5 T 26-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RGE_RS04725 e0b97953437683116ab07f9851682cd7 444 PRINTS PR00409 Phthalate dioxygenase reductase family signature 409 417 3.3E-5 T 26-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RGE_RS04725 e0b97953437683116ab07f9851682cd7 444 Pfam PF01794 Ferric reductase like transmembrane component 45 179 2.9E-18 T 26-04-2016 IPR013130 Ferric reductase transmembrane component-like domain RGE_RS04725 e0b97953437683116ab07f9851682cd7 444 SUPERFAMILY SSF63380 226 317 9.68E-17 T 26-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RGE_RS04725 e0b97953437683116ab07f9851682cd7 444 Pfam PF08022 FAD-binding domain 252 316 9.9E-7 T 26-04-2016 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 RGE_RS04725 e0b97953437683116ab07f9851682cd7 444 PANTHER PTHR11972:SF23 43 443 4.0E-50 T 26-04-2016 RGE_RS11295 8a9d0a60c0209a77e7ef3cf10758b7e0 302 Hamap MF_00397 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [citG]. 1 302 147.439 T 26-04-2016 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 RGE_RS11295 8a9d0a60c0209a77e7ef3cf10758b7e0 302 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 17 280 4.2E-82 T 26-04-2016 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 RGE_RS11295 8a9d0a60c0209a77e7ef3cf10758b7e0 302 PANTHER PTHR30201 2 291 5.7E-82 T 26-04-2016 RGE_RS11295 8a9d0a60c0209a77e7ef3cf10758b7e0 302 TIGRFAM TIGR03125 citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG 15 282 2.9E-94 T 26-04-2016 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 RGE_RS12065 6618e1bee5d6af9633dd0d8666c0c8ff 266 Gene3D G3DSA:3.20.20.370 67 251 1.0E-7 T 26-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RGE_RS12065 6618e1bee5d6af9633dd0d8666c0c8ff 266 SUPERFAMILY SSF88713 36 166 9.45E-11 T 26-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RGE_RS12065 6618e1bee5d6af9633dd0d8666c0c8ff 266 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 15 154 5.7E-16 T 26-04-2016 IPR018763 Protein of unknown function DUF2334 RGE_RS17925 1bc6d523c9ccbc0c9b7db22fd43c91c0 552 SUPERFAMILY SSF103473 18 488 8.89E-46 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS17925 1bc6d523c9ccbc0c9b7db22fd43c91c0 552 PANTHER PTHR11360:SF135 88 310 2.2E-135 T 26-04-2016 RGE_RS17925 1bc6d523c9ccbc0c9b7db22fd43c91c0 552 PANTHER PTHR11360:SF135 21 64 2.2E-135 T 26-04-2016 RGE_RS17925 1bc6d523c9ccbc0c9b7db22fd43c91c0 552 PANTHER PTHR11360:SF135 331 504 2.2E-135 T 26-04-2016 RGE_RS17925 1bc6d523c9ccbc0c9b7db22fd43c91c0 552 Gene3D G3DSA:1.20.1250.20 38 237 6.4E-17 T 26-04-2016 RGE_RS17925 1bc6d523c9ccbc0c9b7db22fd43c91c0 552 Gene3D G3DSA:1.20.1250.20 268 487 5.7E-17 T 26-04-2016 RGE_RS17925 1bc6d523c9ccbc0c9b7db22fd43c91c0 552 Pfam PF07690 Major Facilitator Superfamily 36 438 6.3E-39 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS17925 1bc6d523c9ccbc0c9b7db22fd43c91c0 552 PANTHER PTHR11360 88 310 2.2E-135 T 26-04-2016 RGE_RS17925 1bc6d523c9ccbc0c9b7db22fd43c91c0 552 PANTHER PTHR11360 21 64 2.2E-135 T 26-04-2016 RGE_RS17925 1bc6d523c9ccbc0c9b7db22fd43c91c0 552 PANTHER PTHR11360 331 504 2.2E-135 T 26-04-2016 RGE_RS01755 024bc3fcaaaf74675300dda35e7b204a 346 SUPERFAMILY SSF52402 64 197 3.26E-15 T 26-04-2016 RGE_RS01755 024bc3fcaaaf74675300dda35e7b204a 346 Gene3D G3DSA:3.40.50.620 65 183 2.4E-11 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS23040 83ebea017b55aacb0124b928c81f0f43 330 SUPERFAMILY SSF110296 47 289 2.75E-33 T 26-04-2016 RGE_RS23040 83ebea017b55aacb0124b928c81f0f43 330 Gene3D G3DSA:2.130.10.140 46 276 2.1E-32 T 26-04-2016 RGE_RS23040 83ebea017b55aacb0124b928c81f0f43 330 Pfam PF14870 Photosynthesis system II assembly factor YCF48 183 295 3.6E-6 T 26-04-2016 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain RGE_RS20210 7f0a3c96a0b8dbe0690aa8622731a0ac 189 Pfam PF05685 Putative restriction endonuclease 11 167 2.8E-33 T 26-04-2016 IPR008538 Domain of unknown function DUF820 RGE_RS20210 7f0a3c96a0b8dbe0690aa8622731a0ac 189 SUPERFAMILY SSF52980 7 180 1.61E-28 T 26-04-2016 IPR011335 Restriction endonuclease type II-like RGE_RS20210 7f0a3c96a0b8dbe0690aa8622731a0ac 189 PANTHER PTHR36558 1 189 4.1E-54 T 26-04-2016 RGE_RS20210 7f0a3c96a0b8dbe0690aa8622731a0ac 189 Gene3D G3DSA:3.90.1570.10 8 160 1.1E-27 T 26-04-2016 IPR012296 Nuclease, putative, TT1808 RGE_RS20210 7f0a3c96a0b8dbe0690aa8622731a0ac 189 PANTHER PTHR36558:SF1 1 189 4.1E-54 T 26-04-2016 RGE_RS06920 8955ec45c8ddebf660b5e73def9424b2 167 SUPERFAMILY SSF89963 95 167 3.66E-24 T 26-04-2016 IPR007551 Protein of unknown function DUF520 RGE_RS06920 8955ec45c8ddebf660b5e73def9424b2 167 Gene3D G3DSA:3.30.70.860 101 167 1.0E-29 T 26-04-2016 RGE_RS06920 8955ec45c8ddebf660b5e73def9424b2 167 SUPERFAMILY SSF89963 2 86 2.88E-26 T 26-04-2016 IPR007551 Protein of unknown function DUF520 RGE_RS06920 8955ec45c8ddebf660b5e73def9424b2 167 PANTHER PTHR30476:SF0 1 167 1.4E-66 T 26-04-2016 RGE_RS06920 8955ec45c8ddebf660b5e73def9424b2 167 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 167 26.411 T 26-04-2016 IPR007551 Protein of unknown function DUF520 RGE_RS06920 8955ec45c8ddebf660b5e73def9424b2 167 Gene3D G3DSA:3.30.70.990 10 100 4.3E-29 T 26-04-2016 RGE_RS06920 8955ec45c8ddebf660b5e73def9424b2 167 PANTHER PTHR30476 1 167 1.4E-66 T 26-04-2016 RGE_RS06920 8955ec45c8ddebf660b5e73def9424b2 167 Pfam PF04461 Protein of unknown function (DUF520) 2 166 7.1E-62 T 26-04-2016 IPR007551 Protein of unknown function DUF520 RGE_RS12685 95a92a12387c89f658d7b143c2138b84 205 Hamap MF_00165 Thymidylate kinase [tmk]. 5 203 28.725 T 26-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RGE_RS12685 95a92a12387c89f658d7b143c2138b84 205 SUPERFAMILY SSF52540 4 201 1.27E-47 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12685 95a92a12387c89f658d7b143c2138b84 205 Gene3D G3DSA:3.40.50.300 4 202 2.2E-70 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12685 95a92a12387c89f658d7b143c2138b84 205 Pfam PF02223 Thymidylate kinase 9 192 1.9E-44 T 26-04-2016 RGE_RS12685 95a92a12387c89f658d7b143c2138b84 205 PANTHER PTHR10344 4 200 1.4E-58 T 26-04-2016 RGE_RS12685 95a92a12387c89f658d7b143c2138b84 205 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 3 191 1.5E-44 T 26-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RGE_RS12685 95a92a12387c89f658d7b143c2138b84 205 PANTHER PTHR10344:SF0 4 200 1.4E-58 T 26-04-2016 RGE_RS19950 5a26f1771cd6aaed6d06567b3efe060e 477 Gene3D G3DSA:2.20.200.10 312 347 3.4E-24 T 26-04-2016 RGE_RS19950 5a26f1771cd6aaed6d06567b3efe060e 477 Gene3D G3DSA:2.20.200.10 97 139 3.4E-24 T 26-04-2016 RGE_RS19950 5a26f1771cd6aaed6d06567b3efe060e 477 SUPERFAMILY SSF56954 3 464 3.92E-101 T 26-04-2016 RGE_RS19950 5a26f1771cd6aaed6d06567b3efe060e 477 PANTHER PTHR30203:SF6 1 472 2.9E-119 T 26-04-2016 RGE_RS19950 5a26f1771cd6aaed6d06567b3efe060e 477 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 12 462 5.0E-118 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS19950 5a26f1771cd6aaed6d06567b3efe060e 477 Gene3D G3DSA:1.20.1600.10 349 463 1.7E-89 T 26-04-2016 RGE_RS19950 5a26f1771cd6aaed6d06567b3efe060e 477 Gene3D G3DSA:1.20.1600.10 140 311 1.7E-89 T 26-04-2016 RGE_RS19950 5a26f1771cd6aaed6d06567b3efe060e 477 Gene3D G3DSA:1.20.1600.10 47 87 1.7E-89 T 26-04-2016 RGE_RS19950 5a26f1771cd6aaed6d06567b3efe060e 477 Pfam PF02321 Outer membrane efflux protein 61 252 3.5E-24 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS19950 5a26f1771cd6aaed6d06567b3efe060e 477 Pfam PF02321 Outer membrane efflux protein 284 458 1.1E-17 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS19950 5a26f1771cd6aaed6d06567b3efe060e 477 PANTHER PTHR30203 1 472 2.9E-119 T 26-04-2016 RGE_RS07080 501d5c0598a6cc13297c1b85b3253ba7 403 PIRSF PIRSF001434 1 403 2.1E-134 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS07080 501d5c0598a6cc13297c1b85b3253ba7 403 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 401 8.6E-121 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS07080 501d5c0598a6cc13297c1b85b3253ba7 403 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 204 218 - T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS07080 501d5c0598a6cc13297c1b85b3253ba7 403 PANTHER PTHR11808 11 403 5.3E-147 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS07080 501d5c0598a6cc13297c1b85b3253ba7 403 PANTHER PTHR11808:SF14 11 403 5.3E-147 T 26-04-2016 RGE_RS07080 501d5c0598a6cc13297c1b85b3253ba7 403 Gene3D G3DSA:3.40.640.10 10 259 2.1E-90 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS07080 501d5c0598a6cc13297c1b85b3253ba7 403 Gene3D G3DSA:3.90.1150.10 263 402 3.2E-43 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS07080 501d5c0598a6cc13297c1b85b3253ba7 403 SUPERFAMILY SSF53383 27 402 4.76E-103 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS21830 e2c1fe9b78ef467ee51e82fe6d13ba91 427 Pfam PF00171 Aldehyde dehydrogenase family 315 383 5.2E-7 T 26-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RGE_RS21830 e2c1fe9b78ef467ee51e82fe6d13ba91 427 Pfam PF00171 Aldehyde dehydrogenase family 10 284 4.5E-16 T 26-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RGE_RS21830 e2c1fe9b78ef467ee51e82fe6d13ba91 427 Gene3D G3DSA:3.40.605.10 7 229 2.6E-99 T 26-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RGE_RS21830 e2c1fe9b78ef467ee51e82fe6d13ba91 427 Gene3D G3DSA:3.40.605.10 385 426 2.6E-99 T 26-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RGE_RS21830 e2c1fe9b78ef467ee51e82fe6d13ba91 427 PANTHER PTHR11063:SF8 4 427 5.9E-171 T 26-04-2016 RGE_RS21830 e2c1fe9b78ef467ee51e82fe6d13ba91 427 Gene3D G3DSA:3.40.309.10 231 384 1.2E-41 T 26-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RGE_RS21830 e2c1fe9b78ef467ee51e82fe6d13ba91 427 PANTHER PTHR11063 4 427 5.9E-171 T 26-04-2016 RGE_RS21830 e2c1fe9b78ef467ee51e82fe6d13ba91 427 SUPERFAMILY SSF53720 9 426 9.56E-116 T 26-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RGE_RS21830 e2c1fe9b78ef467ee51e82fe6d13ba91 427 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 18 416 2.3E-145 T 26-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RGE_RS21830 e2c1fe9b78ef467ee51e82fe6d13ba91 427 PIRSF PIRSF000151 4 427 3.7E-169 T 26-04-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RGE_RS21830 e2c1fe9b78ef467ee51e82fe6d13ba91 427 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 10 426 40.24 T 26-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 Gene3D G3DSA:3.40.50.300 341 405 6.1E-11 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 Gene3D G3DSA:3.40.50.300 186 292 6.1E-11 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 Gene3D G3DSA:3.40.50.300 527 539 6.1E-11 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 Pfam PF12705 PD-(D/E)XK nuclease superfamily 57 167 1.3E-4 T 26-04-2016 RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 Pfam PF13307 Helicase C-terminal domain 595 756 2.9E-30 T 26-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 SMART SM00491 609 744 2.2E-6 T 26-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 Gene3D G3DSA:3.40.50.300 579 681 3.8E-6 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 Gene3D G3DSA:3.40.50.300 713 738 3.8E-6 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 PANTHER PTHR11472 186 756 5.9E-68 T 26-04-2016 RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 Pfam PF06733 DEAD_2 293 396 3.9E-11 T 26-04-2016 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 SUPERFAMILY SSF52540 202 263 2.62E-17 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 SUPERFAMILY SSF52540 525 736 2.62E-17 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18135 3fdb5cc8d9d3cc4de04958d92fd47476 761 SUPERFAMILY SSF52540 333 399 2.62E-17 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06910 9a78d61a3746cb87d2c2c0e11f0bfd13 391 PANTHER PTHR10909 359 390 6.0E-141 T 26-04-2016 RGE_RS06910 9a78d61a3746cb87d2c2c0e11f0bfd13 391 PANTHER PTHR10909 1 342 6.0E-141 T 26-04-2016 RGE_RS06910 9a78d61a3746cb87d2c2c0e11f0bfd13 391 SUPERFAMILY SSF56645 1 244 6.81E-75 T 26-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RGE_RS06910 9a78d61a3746cb87d2c2c0e11f0bfd13 391 Gene3D G3DSA:2.40.110.10 125 221 3.2E-34 T 26-04-2016 RGE_RS06910 9a78d61a3746cb87d2c2c0e11f0bfd13 391 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 219 1.8E-19 T 26-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RGE_RS06910 9a78d61a3746cb87d2c2c0e11f0bfd13 391 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 388 2.3E-15 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS06910 9a78d61a3746cb87d2c2c0e11f0bfd13 391 Gene3D G3DSA:1.20.140.10 222 390 5.6E-22 T 26-04-2016 RGE_RS06910 9a78d61a3746cb87d2c2c0e11f0bfd13 391 Gene3D G3DSA:1.10.540.10 4 122 1.1E-24 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS06910 9a78d61a3746cb87d2c2c0e11f0bfd13 391 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 121 2.3E-21 T 26-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RGE_RS06910 9a78d61a3746cb87d2c2c0e11f0bfd13 391 SUPERFAMILY SSF47203 231 390 3.22E-14 T 26-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RGE_RS06910 9a78d61a3746cb87d2c2c0e11f0bfd13 391 PANTHER PTHR10909:SF229 359 390 6.0E-141 T 26-04-2016 RGE_RS06910 9a78d61a3746cb87d2c2c0e11f0bfd13 391 PANTHER PTHR10909:SF229 1 342 6.0E-141 T 26-04-2016 RGE_RS07380 893f7226ceed24e8a7f9e86de7f81248 552 Pfam PF06418 CTP synthase N-terminus 3 265 1.2E-125 T 26-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RGE_RS07380 893f7226ceed24e8a7f9e86de7f81248 552 PANTHER PTHR11550 1 542 0.0 T 26-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RGE_RS07380 893f7226ceed24e8a7f9e86de7f81248 552 SUPERFAMILY SSF52540 1 266 3.99E-121 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07380 893f7226ceed24e8a7f9e86de7f81248 552 TIGRFAM TIGR00337 PyrG: CTP synthase 1 535 9.7E-238 T 26-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RGE_RS07380 893f7226ceed24e8a7f9e86de7f81248 552 Pfam PF00117 Glutamine amidotransferase class-I 300 535 1.4E-53 T 26-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RGE_RS07380 893f7226ceed24e8a7f9e86de7f81248 552 Hamap MF_01227 CTP synthase [pyrG]. 2 540 50.908 T 26-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RGE_RS07380 893f7226ceed24e8a7f9e86de7f81248 552 Gene3D G3DSA:3.40.50.300 1 283 2.5E-132 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07380 893f7226ceed24e8a7f9e86de7f81248 552 SUPERFAMILY SSF52317 287 542 4.17E-79 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS07380 893f7226ceed24e8a7f9e86de7f81248 552 Gene3D G3DSA:3.40.50.880 287 541 1.7E-93 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS20880 1d29c608bcb87541c46a4f670c87c3e3 140 SUPERFAMILY SSF52833 4 116 1.81E-28 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20880 1d29c608bcb87541c46a4f670c87c3e3 140 Pfam PF03960 ArsC family 59 114 3.7E-9 T 26-04-2016 IPR006660 Arsenate reductase-like RGE_RS20880 1d29c608bcb87541c46a4f670c87c3e3 140 Gene3D G3DSA:3.40.30.10 1 116 9.5E-24 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20880 1d29c608bcb87541c46a4f670c87c3e3 140 TIGRFAM TIGR01616 nitro_assoc: nitrogenase-associated protein 2 128 8.6E-43 T 26-04-2016 IPR006503 Nitrogenase-associated protein RGE_RS18630 5e904efe7fdbad1250224913dff1278a 263 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 4 261 2.2E-105 T 26-04-2016 IPR010247 N-formylglutamate deformylase RGE_RS18630 5e904efe7fdbad1250224913dff1278a 263 SUPERFAMILY SSF53187 5 261 4.71E-78 T 26-04-2016 RGE_RS18630 5e904efe7fdbad1250224913dff1278a 263 Gene3D G3DSA:3.40.630.40 4 261 5.0E-90 T 26-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RGE_RS18630 5e904efe7fdbad1250224913dff1278a 263 Pfam PF05013 N-formylglutamate amidohydrolase 13 226 2.9E-69 T 26-04-2016 IPR007709 N-formylglutamate amidohydrolase RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 SUPERFAMILY SSF53633 9 317 2.23E-67 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 PIRSF PIRSF000723 7 319 8.3E-111 T 26-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 PRINTS PR01469 Bacterial carbamate kinase signature 219 234 1.7E-50 T 26-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 PRINTS PR01469 Bacterial carbamate kinase signature 274 289 1.7E-50 T 26-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 PRINTS PR01469 Bacterial carbamate kinase signature 116 135 1.7E-50 T 26-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 PRINTS PR01469 Bacterial carbamate kinase signature 81 99 1.7E-50 T 26-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 PRINTS PR01469 Bacterial carbamate kinase signature 165 184 1.7E-50 T 26-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 PRINTS PR01469 Bacterial carbamate kinase signature 50 69 1.7E-50 T 26-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 PRINTS PR01469 Bacterial carbamate kinase signature 188 206 1.7E-50 T 26-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 Pfam PF00696 Amino acid kinase family 10 301 1.7E-22 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 PANTHER PTHR30409:SF1 6 320 6.2E-129 T 26-04-2016 RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 PANTHER PTHR30409 6 320 6.2E-129 T 26-04-2016 RGE_RS04360 5c5cb163cc97602787d9157c93c7f202 347 Gene3D G3DSA:3.40.1160.10 9 318 6.2E-91 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS06190 3627f0ddab8d4be30d5a207664265879 220 PANTHER PTHR30055:SF75 11 178 1.7E-19 T 26-04-2016 RGE_RS06190 3627f0ddab8d4be30d5a207664265879 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 5.8E-5 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS06190 3627f0ddab8d4be30d5a207664265879 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 5.8E-5 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS06190 3627f0ddab8d4be30d5a207664265879 220 Gene3D G3DSA:1.10.357.10 8 209 3.0E-61 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS06190 3627f0ddab8d4be30d5a207664265879 220 SUPERFAMILY SSF46689 18 87 4.44E-13 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS06190 3627f0ddab8d4be30d5a207664265879 220 SUPERFAMILY SSF48498 98 179 8.75E-7 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS06190 3627f0ddab8d4be30d5a207664265879 220 PANTHER PTHR30055 11 178 1.7E-19 T 26-04-2016 RGE_RS06190 3627f0ddab8d4be30d5a207664265879 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 71 6.6E-10 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS22575 468de463bcf00f3db19691a2ac739e6b 331 Pfam PF03595 Voltage-dependent anion channel 9 308 2.9E-51 T 26-04-2016 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 RGE_RS22575 468de463bcf00f3db19691a2ac739e6b 331 PANTHER PTHR37955 1 331 1.1E-18 T 26-04-2016 RGE_RS22575 468de463bcf00f3db19691a2ac739e6b 331 PANTHER PTHR37955:SF1 1 331 1.1E-18 T 26-04-2016 RGE_RS20830 322970f4402031b32abd783c33eb273a 259 Pfam PF01816 Leucine rich repeat variant 192 215 1.1E-4 T 26-04-2016 IPR004830 Leucine rich repeat variant RGE_RS20830 322970f4402031b32abd783c33eb273a 259 Pfam PF01816 Leucine rich repeat variant 73 95 4.7E-5 T 26-04-2016 IPR004830 Leucine rich repeat variant RGE_RS20830 322970f4402031b32abd783c33eb273a 259 Pfam PF01816 Leucine rich repeat variant 144 167 4.9E-6 T 26-04-2016 IPR004830 Leucine rich repeat variant RGE_RS20830 322970f4402031b32abd783c33eb273a 259 Pfam PF05484 LRV protein FeS4 cluster 13 64 5.0E-23 T 26-04-2016 IPR008665 LRV FeS4 cluster RGE_RS20830 322970f4402031b32abd783c33eb273a 259 Gene3D G3DSA:1.25.10.10 22 252 5.9E-50 T 26-04-2016 IPR011989 Armadillo-like helical RGE_RS20830 322970f4402031b32abd783c33eb273a 259 SUPERFAMILY SSF48371 20 224 7.79E-46 T 26-04-2016 IPR016024 Armadillo-type fold GO:0005488 RGE_RS20435 2f7e0bf2f661d8fdb188a16f13680e4f 85 Gene3D G3DSA:3.40.30.10 1 80 3.4E-28 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20435 2f7e0bf2f661d8fdb188a16f13680e4f 85 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 83 1.7E-35 T 26-04-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 RGE_RS20435 2f7e0bf2f661d8fdb188a16f13680e4f 85 SUPERFAMILY SSF52833 1 84 2.41E-27 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20435 2f7e0bf2f661d8fdb188a16f13680e4f 85 PRINTS PR00160 Glutaredoxin signature 4 22 3.8E-17 T 26-04-2016 IPR014025 Glutaredoxin subgroup RGE_RS20435 2f7e0bf2f661d8fdb188a16f13680e4f 85 PRINTS PR00160 Glutaredoxin signature 61 74 3.8E-17 T 26-04-2016 IPR014025 Glutaredoxin subgroup RGE_RS20435 2f7e0bf2f661d8fdb188a16f13680e4f 85 PRINTS PR00160 Glutaredoxin signature 47 60 3.8E-17 T 26-04-2016 IPR014025 Glutaredoxin subgroup RGE_RS20435 2f7e0bf2f661d8fdb188a16f13680e4f 85 Pfam PF00462 Glutaredoxin 4 64 1.8E-21 T 26-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RGE_RS20435 2f7e0bf2f661d8fdb188a16f13680e4f 85 PANTHER PTHR10168 2 83 2.3E-27 T 26-04-2016 RGE_RS20435 2f7e0bf2f661d8fdb188a16f13680e4f 85 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 26-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 RGE_RS19200 4bb5f906b0e03c09e5108be07ac4845e 373 SMART SM00448 4 115 1.0E-12 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19200 4bb5f906b0e03c09e5108be07ac4845e 373 Gene3D G3DSA:3.40.50.2300 3 144 1.1E-20 T 26-04-2016 RGE_RS19200 4bb5f906b0e03c09e5108be07ac4845e 373 SUPERFAMILY SSF52172 2 145 6.12E-24 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS19200 4bb5f906b0e03c09e5108be07ac4845e 373 SUPERFAMILY SSF55874 226 350 3.14E-13 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19200 4bb5f906b0e03c09e5108be07ac4845e 373 Pfam PF00072 Response regulator receiver domain 10 113 9.5E-12 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS19200 4bb5f906b0e03c09e5108be07ac4845e 373 PANTHER PTHR24421:SF1 134 364 4.1E-43 T 26-04-2016 RGE_RS19200 4bb5f906b0e03c09e5108be07ac4845e 373 PANTHER PTHR24421 134 364 4.1E-43 T 26-04-2016 RGE_RS19200 4bb5f906b0e03c09e5108be07ac4845e 373 SMART SM00387 258 351 4.5E-5 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19200 4bb5f906b0e03c09e5108be07ac4845e 373 Gene3D G3DSA:3.30.565.10 264 351 3.9E-7 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19200 4bb5f906b0e03c09e5108be07ac4845e 373 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 266 350 8.9E-6 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19200 4bb5f906b0e03c09e5108be07ac4845e 373 Pfam PF07730 Histidine kinase 156 220 2.7E-13 T 26-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RGE_RS06925 4c8ea5f7983990c9111c1ef3cd9fa2a9 338 PANTHER PTHR21071 1 338 1.6E-145 T 26-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS06925 4c8ea5f7983990c9111c1ef3cd9fa2a9 338 Gene3D G3DSA:3.30.465.10 76 238 1.2E-53 T 26-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RGE_RS06925 4c8ea5f7983990c9111c1ef3cd9fa2a9 338 SUPERFAMILY SSF56176 8 196 4.36E-43 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS06925 4c8ea5f7983990c9111c1ef3cd9fa2a9 338 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 338 84.808 T 26-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS06925 4c8ea5f7983990c9111c1ef3cd9fa2a9 338 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 9 334 4.3E-70 T 26-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS06925 4c8ea5f7983990c9111c1ef3cd9fa2a9 338 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 215 338 7.7E-36 T 26-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS06925 4c8ea5f7983990c9111c1ef3cd9fa2a9 338 Gene3D G3DSA:3.90.78.10 239 338 2.3E-44 T 26-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS06925 4c8ea5f7983990c9111c1ef3cd9fa2a9 338 Pfam PF01565 FAD binding domain 23 154 4.6E-23 T 26-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RGE_RS06925 4c8ea5f7983990c9111c1ef3cd9fa2a9 338 Gene3D G3DSA:3.30.43.10 7 71 2.4E-18 T 26-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RGE_RS06925 4c8ea5f7983990c9111c1ef3cd9fa2a9 338 PANTHER PTHR21071:SF6 1 338 1.6E-145 T 26-04-2016 RGE_RS06925 4c8ea5f7983990c9111c1ef3cd9fa2a9 338 SUPERFAMILY SSF56194 212 338 4.05E-47 T 26-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04545 def71dfbe424f7df9c975216fa39d1e5 229 SUPERFAMILY SSF81342 7 176 2.12E-31 T 26-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RGE_RS04545 def71dfbe424f7df9c975216fa39d1e5 229 Pfam PF01292 Prokaryotic cytochrome b561 12 173 1.1E-21 T 26-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RGE_RS04545 def71dfbe424f7df9c975216fa39d1e5 229 Gene3D G3DSA:1.20.950.20 40 173 6.8E-6 T 26-04-2016 RGE_RS11930 969683126c9e0fe8a598435ba8fcd3f7 737 PANTHER PTHR10587 42 308 1.5E-83 T 26-04-2016 RGE_RS11930 969683126c9e0fe8a598435ba8fcd3f7 737 PANTHER PTHR10587 358 635 1.5E-83 T 26-04-2016 RGE_RS11930 969683126c9e0fe8a598435ba8fcd3f7 737 Pfam PF13632 Glycosyl transferase family group 2 231 446 3.2E-15 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS11930 969683126c9e0fe8a598435ba8fcd3f7 737 SUPERFAMILY SSF53448 127 405 4.16E-20 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS11930 969683126c9e0fe8a598435ba8fcd3f7 737 PANTHER PTHR10587:SF63 42 308 1.5E-83 T 26-04-2016 RGE_RS11930 969683126c9e0fe8a598435ba8fcd3f7 737 PANTHER PTHR10587:SF63 358 635 1.5E-83 T 26-04-2016 RGE_RS01640 6883d87a0d61cacc7bcba9e3a32b6613 289 SUPERFAMILY SSF54814 2 106 6.28E-36 T 26-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RGE_RS01640 6883d87a0d61cacc7bcba9e3a32b6613 289 PANTHER PTHR11760 2 244 9.9E-126 T 26-04-2016 RGE_RS01640 6883d87a0d61cacc7bcba9e3a32b6613 289 SMART SM00322 60 125 2.5E-6 T 26-04-2016 IPR004087 K Homology domain GO:0003676 RGE_RS01640 6883d87a0d61cacc7bcba9e3a32b6613 289 Gene3D G3DSA:3.30.1140.32 108 206 1.2E-44 T 26-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 RGE_RS01640 6883d87a0d61cacc7bcba9e3a32b6613 289 PANTHER PTHR11760:SF19 2 244 9.9E-126 T 26-04-2016 RGE_RS01640 6883d87a0d61cacc7bcba9e3a32b6613 289 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 38.377 T 26-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RGE_RS01640 6883d87a0d61cacc7bcba9e3a32b6613 289 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 9.6E-40 T 26-04-2016 RGE_RS01640 6883d87a0d61cacc7bcba9e3a32b6613 289 SUPERFAMILY SSF54821 108 206 5.23E-39 T 26-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 RGE_RS01640 6883d87a0d61cacc7bcba9e3a32b6613 289 Gene3D G3DSA:3.30.300.20 18 107 4.8E-31 T 26-04-2016 IPR015946 K homology domain-like, alpha/beta RGE_RS01640 6883d87a0d61cacc7bcba9e3a32b6613 289 Pfam PF07650 KH domain 39 110 9.6E-19 T 26-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 RGE_RS01640 6883d87a0d61cacc7bcba9e3a32b6613 289 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 5.2E-91 T 26-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RGE_RS01640 6883d87a0d61cacc7bcba9e3a32b6613 289 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 26-04-2016 IPR018280 Ribosomal protein S3, conserved site RGE_RS14715 21e38c97c258c30cd741298a9a9d3653 204 SUPERFAMILY SSF55729 37 161 2.72E-7 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS14715 21e38c97c258c30cd741298a9a9d3653 204 Pfam PF12261 Thermostable hemolysin 31 193 1.2E-55 T 26-04-2016 IPR022050 Thermostable hemolysin RGE_RS18890 b85e95f90d4a1704165ddd1a38ad1aab 263 SUPERFAMILY SSF52540 1 255 1.08E-51 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18890 b85e95f90d4a1704165ddd1a38ad1aab 263 Pfam PF13614 AAA domain 5 182 3.4E-37 T 26-04-2016 IPR025669 AAA domain RGE_RS18890 b85e95f90d4a1704165ddd1a38ad1aab 263 Gene3D G3DSA:3.40.50.300 2 255 8.7E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18890 b85e95f90d4a1704165ddd1a38ad1aab 263 PANTHER PTHR13696:SF66 4 263 1.4E-67 T 26-04-2016 RGE_RS18890 b85e95f90d4a1704165ddd1a38ad1aab 263 PANTHER PTHR13696 4 263 1.4E-67 T 26-04-2016 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 Pfam PF13844 Glycosyl transferase family 41 275 421 2.8E-39 T 26-04-2016 IPR029489 O-GlcNAc transferase, C-terminal UniPathway: UPA00378 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 Pfam PF13844 Glycosyl transferase family 41 434 627 2.0E-44 T 26-04-2016 IPR029489 O-GlcNAc transferase, C-terminal UniPathway: UPA00378 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 Gene3D G3DSA:1.25.40.10 14 206 1.3E-29 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 PANTHER PTHR23083 613 627 2.0E-18 T 26-04-2016 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 PANTHER PTHR23083 14 177 2.0E-18 T 26-04-2016 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 SUPERFAMILY SSF48452 11 179 2.66E-24 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 SMART SM00028 9 42 0.51 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 SMART SM00028 111 144 12.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 SMART SM00028 145 178 10.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 SMART SM00028 43 76 0.98 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 Pfam PF13432 Tetratricopeptide repeat 15 69 2.0E-5 T 26-04-2016 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 Pfam PF13432 Tetratricopeptide repeat 86 143 0.0011 T 26-04-2016 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 SUPERFAMILY SSF48452 383 471 6.17E-8 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS08330 e1c0b834928aad0115b97ecf092e5840 648 SUPERFAMILY SSF48452 90 292 6.17E-8 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS14315 6bc2c41bf1d39280c3ada168f19ed091 151 PANTHER PTHR33990:SF1 2 144 4.9E-41 T 26-04-2016 RGE_RS14315 6bc2c41bf1d39280c3ada168f19ed091 151 Gene3D G3DSA:3.10.180.10 9 146 2.5E-42 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS14315 6bc2c41bf1d39280c3ada168f19ed091 151 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 58 143 2.1E-4 T 26-04-2016 IPR028973 3-demethylubiquinone-9 3-methyltransferase RGE_RS14315 6bc2c41bf1d39280c3ada168f19ed091 151 SUPERFAMILY SSF54593 2 145 1.88E-36 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS14315 6bc2c41bf1d39280c3ada168f19ed091 151 PANTHER PTHR33990 2 144 4.9E-41 T 26-04-2016 RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 Gene3D G3DSA:3.40.50.280 13 147 9.0E-37 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 PANTHER PTHR23408:SF1 737 1105 2.8E-206 T 26-04-2016 RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 PANTHER PTHR23408:SF1 490 714 2.8E-206 T 26-04-2016 RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 PANTHER PTHR23408 737 1105 2.8E-206 T 26-04-2016 RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 PANTHER PTHR23408 490 714 2.8E-206 T 26-04-2016 RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 Pfam PF01642 Methylmalonyl-CoA mutase 579 1099 2.4E-145 T 26-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 SUPERFAMILY SSF51703 524 1101 6.02E-151 T 26-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 Gene3D G3DSA:3.40.50.300 202 419 2.4E-33 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 Gene3D G3DSA:3.20.20.240 557 1101 4.2E-197 T 26-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 SUPERFAMILY SSF52540 171 470 2.04E-52 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 Pfam PF03308 ArgK protein 176 420 1.6E-40 T 26-04-2016 RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 Pfam PF02310 B12 binding domain 22 121 1.4E-10 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 737 1103 1.3E-92 T 26-04-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 RGE_RS21340 2262785b4212b522393a4dbf1636faab 1105 SUPERFAMILY SSF52242 9 151 1.57E-40 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS09715 59f0d8be3c1baa2721de018d79efaca4 328 PIRSF PIRSF017082 1 328 1.1E-67 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS09715 59f0d8be3c1baa2721de018d79efaca4 328 PANTHER PTHR30349 27 323 3.3E-75 T 26-04-2016 RGE_RS09715 59f0d8be3c1baa2721de018d79efaca4 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 53 320 5.7E-79 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS09715 59f0d8be3c1baa2721de018d79efaca4 328 PANTHER PTHR30349:SF32 27 323 3.3E-75 T 26-04-2016 RGE_RS09715 59f0d8be3c1baa2721de018d79efaca4 328 SUPERFAMILY SSF53850 33 278 7.76E-9 T 26-04-2016 RGE_RS00835 5a7dc34aaf818f90b4497396771cd65a 297 SUPERFAMILY SSF103481 53 150 5.23E-11 T 26-04-2016 RGE_RS00835 5a7dc34aaf818f90b4497396771cd65a 297 PANTHER PTHR22911 20 297 5.3E-16 T 26-04-2016 RGE_RS00835 5a7dc34aaf818f90b4497396771cd65a 297 PANTHER PTHR22911:SF23 20 297 5.3E-16 T 26-04-2016 RGE_RS00835 5a7dc34aaf818f90b4497396771cd65a 297 Pfam PF00892 EamA-like transporter family 19 146 2.8E-11 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS00835 5a7dc34aaf818f90b4497396771cd65a 297 SUPERFAMILY SSF103481 204 296 1.57E-5 T 26-04-2016 RGE_RS01680 eb4751344268165b32e4d515fae7cf21 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 3.5E-24 T 26-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01680 eb4751344268165b32e4d515fae7cf21 101 SUPERFAMILY SSF57716 2 101 6.84E-36 T 26-04-2016 RGE_RS01680 eb4751344268165b32e4d515fae7cf21 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.968 T 26-04-2016 IPR023036 Ribosomal protein S14, bacterial/plastid RGE_RS01680 eb4751344268165b32e4d515fae7cf21 101 PANTHER PTHR19836 1 101 6.8E-51 T 26-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01680 eb4751344268165b32e4d515fae7cf21 101 Gene3D G3DSA:4.10.830.10 41 101 2.6E-28 T 26-04-2016 RGE_RS10195 52e83bea1fc4c3e5cd51c7a5c33162e5 274 Gene3D G3DSA:3.40.190.10 33 164 5.4E-46 T 26-04-2016 RGE_RS10195 52e83bea1fc4c3e5cd51c7a5c33162e5 274 Pfam PF03180 NLPA lipoprotein 36 271 2.7E-70 T 26-04-2016 IPR004872 Lipoprotein NlpA family RGE_RS10195 52e83bea1fc4c3e5cd51c7a5c33162e5 274 PANTHER PTHR30429 5 273 1.8E-86 T 26-04-2016 IPR004872 Lipoprotein NlpA family RGE_RS10195 52e83bea1fc4c3e5cd51c7a5c33162e5 274 PIRSF PIRSF002854 2 272 3.8E-76 T 26-04-2016 IPR004872 Lipoprotein NlpA family RGE_RS10195 52e83bea1fc4c3e5cd51c7a5c33162e5 274 SUPERFAMILY SSF53850 36 272 2.63E-65 T 26-04-2016 RGE_RS11320 b13c6801195220691d92c5d8a9586102 152 Gene3D G3DSA:1.10.150.120 75 150 1.3E-29 T 26-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RGE_RS11320 b13c6801195220691d92c5d8a9586102 152 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 26-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RGE_RS11320 b13c6801195220691d92c5d8a9586102 152 PANTHER PTHR11908:SF82 1 140 5.4E-29 T 26-04-2016 RGE_RS11320 b13c6801195220691d92c5d8a9586102 152 SUPERFAMILY SSF54292 2 78 1.97E-25 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS11320 b13c6801195220691d92c5d8a9586102 152 PANTHER PTHR11908 1 140 5.4E-29 T 26-04-2016 RGE_RS11320 b13c6801195220691d92c5d8a9586102 152 Pfam PF01799 [2Fe-2S] binding domain 73 144 4.2E-26 T 26-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RGE_RS11320 b13c6801195220691d92c5d8a9586102 152 Gene3D G3DSA:3.10.20.30 2 74 6.8E-29 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS11320 b13c6801195220691d92c5d8a9586102 152 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 63 2.3E-8 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS11320 b13c6801195220691d92c5d8a9586102 152 SUPERFAMILY SSF47741 73 151 5.63E-30 T 26-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RGE_RS12885 0eb590da5dca39d0084a6385d1085acb 644 PANTHER PTHR30441:SF2 7 632 3.2E-13 T 26-04-2016 RGE_RS12885 0eb590da5dca39d0084a6385d1085acb 644 Pfam PF05170 AsmA family 286 533 1.9E-17 T 26-04-2016 IPR007844 AsmA RGE_RS12885 0eb590da5dca39d0084a6385d1085acb 644 PANTHER PTHR30441 7 632 3.2E-13 T 26-04-2016 RGE_RS00125 0c1cf4ebc70943a1716c0baef8e8f1c0 887 SUPERFAMILY SSF55486 238 483 1.03E-72 T 26-04-2016 RGE_RS00125 0c1cf4ebc70943a1716c0baef8e8f1c0 887 PANTHER PTHR11533 36 771 5.5E-192 T 26-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 RGE_RS00125 0c1cf4ebc70943a1716c0baef8e8f1c0 887 Gene3D G3DSA:1.10.390.10 338 483 4.3E-37 T 26-04-2016 RGE_RS00125 0c1cf4ebc70943a1716c0baef8e8f1c0 887 Pfam PF11838 ERAP1-like C-terminal domain 547 814 3.3E-40 T 26-04-2016 IPR024571 ERAP1-like C-terminal domain RGE_RS00125 0c1cf4ebc70943a1716c0baef8e8f1c0 887 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 165 180 1.1E-23 T 26-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RGE_RS00125 0c1cf4ebc70943a1716c0baef8e8f1c0 887 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 212 227 1.1E-23 T 26-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RGE_RS00125 0c1cf4ebc70943a1716c0baef8e8f1c0 887 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 344 356 1.1E-23 T 26-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RGE_RS00125 0c1cf4ebc70943a1716c0baef8e8f1c0 887 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 289 299 1.1E-23 T 26-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RGE_RS00125 0c1cf4ebc70943a1716c0baef8e8f1c0 887 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 325 340 1.1E-23 T 26-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RGE_RS00125 0c1cf4ebc70943a1716c0baef8e8f1c0 887 Pfam PF01433 Peptidase family M1 36 416 8.4E-98 T 26-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RGE_RS00125 0c1cf4ebc70943a1716c0baef8e8f1c0 887 PANTHER PTHR11533:SF190 36 771 5.5E-192 T 26-04-2016 RGE_RS00125 0c1cf4ebc70943a1716c0baef8e8f1c0 887 SUPERFAMILY SSF63737 30 228 6.41E-42 T 26-04-2016 RGE_RS03200 4bbd4576f22a050cd2f260f3e32ce5d4 132 Gene3D G3DSA:3.10.180.10 1 127 1.7E-25 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS03200 4bbd4576f22a050cd2f260f3e32ce5d4 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 5.2E-11 T 26-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RGE_RS03200 4bbd4576f22a050cd2f260f3e32ce5d4 132 PANTHER PTHR35006 1 130 2.6E-39 T 26-04-2016 RGE_RS03200 4bbd4576f22a050cd2f260f3e32ce5d4 132 SUPERFAMILY SSF54593 2 129 1.11E-24 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS09180 09802a34100263a268b8820069e92b22 393 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 8 192 3.6E-34 T 26-04-2016 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 RGE_RS09180 09802a34100263a268b8820069e92b22 393 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 226 344 1.3E-29 T 26-04-2016 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.196|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 RGE_RS09180 09802a34100263a268b8820069e92b22 393 SUPERFAMILY SSF53335 215 389 2.81E-28 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS09180 09802a34100263a268b8820069e92b22 393 PANTHER PTHR14741 217 348 2.5E-48 T 26-04-2016 RGE_RS09180 09802a34100263a268b8820069e92b22 393 PIRSF PIRSF036428 1 393 1.9E-128 T 26-04-2016 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|KEGG: 00860+2.1.1.132|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00148 RGE_RS09180 09802a34100263a268b8820069e92b22 393 SUPERFAMILY SSF53790 5 202 5.89E-35 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09180 09802a34100263a268b8820069e92b22 393 Gene3D G3DSA:3.40.1010.10 4 105 1.7E-16 T 26-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RGE_RS09180 09802a34100263a268b8820069e92b22 393 Gene3D G3DSA:3.40.50.150 223 379 2.1E-22 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS09180 09802a34100263a268b8820069e92b22 393 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 187 5.2E-16 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09180 09802a34100263a268b8820069e92b22 393 PANTHER PTHR14741:SF34 217 348 2.5E-48 T 26-04-2016 RGE_RS09180 09802a34100263a268b8820069e92b22 393 Gene3D G3DSA:3.30.950.10 106 205 1.2E-20 T 26-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RGE_RS09590 90f6d31645e8feac4728c9e71cf9a9e9 452 PANTHER PTHR30288 1 452 1.3E-40 T 26-04-2016 RGE_RS09590 90f6d31645e8feac4728c9e71cf9a9e9 452 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 221 439 6.6E-37 T 26-04-2016 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 RGE_RS09590 90f6d31645e8feac4728c9e71cf9a9e9 452 ProSitePatterns PS00018 EF-hand calcium-binding domain. 135 147 - T 26-04-2016 IPR018247 EF-Hand 1, calcium-binding site RGE_RS09590 90f6d31645e8feac4728c9e71cf9a9e9 452 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 5 100 5.4E-11 T 26-04-2016 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 RGE_RS09590 90f6d31645e8feac4728c9e71cf9a9e9 452 PANTHER PTHR30288:SF0 1 452 1.3E-40 T 26-04-2016 RGE_RS18500 3d1ca2c6bcdbcf0ff86c8b5de51051a5 422 PANTHER PTHR30061:SF17 7 416 2.1E-66 T 26-04-2016 RGE_RS18500 3d1ca2c6bcdbcf0ff86c8b5de51051a5 422 Gene3D G3DSA:3.40.190.10 152 352 2.9E-59 T 26-04-2016 RGE_RS18500 3d1ca2c6bcdbcf0ff86c8b5de51051a5 422 PANTHER PTHR30061 7 416 2.1E-66 T 26-04-2016 RGE_RS18500 3d1ca2c6bcdbcf0ff86c8b5de51051a5 422 SUPERFAMILY SSF53850 25 397 2.12E-76 T 26-04-2016 RGE_RS18500 3d1ca2c6bcdbcf0ff86c8b5de51051a5 422 Pfam PF01547 Bacterial extracellular solute-binding protein 44 332 1.1E-32 T 26-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 RGE_RS18500 3d1ca2c6bcdbcf0ff86c8b5de51051a5 422 Gene3D G3DSA:3.40.190.10 26 151 1.5E-12 T 26-04-2016 RGE_RS00950 7f9f62e9517a422faaf2e6a1ebf4206e 589 Pfam PF05960 Bacterial protein of unknown function (DUF885) 47 578 1.2E-162 T 26-04-2016 IPR010281 Protein of unknown function DUF885 RGE_RS00950 7f9f62e9517a422faaf2e6a1ebf4206e 589 PANTHER PTHR33361 31 583 3.5E-135 T 26-04-2016 RGE_RS00950 7f9f62e9517a422faaf2e6a1ebf4206e 589 PANTHER PTHR33361:SF4 31 583 3.5E-135 T 26-04-2016 RGE_RS21595 e5655a2f920c875bc7132e21bc39e8d5 156 PANTHER PTHR36302:SF1 1 151 1.1E-25 T 26-04-2016 RGE_RS21595 e5655a2f920c875bc7132e21bc39e8d5 156 SUPERFAMILY SSF110087 4 144 1.1E-43 T 26-04-2016 IPR007410 DR1885-like metal-binding protein RGE_RS21595 e5655a2f920c875bc7132e21bc39e8d5 156 Pfam PF04314 Protein of unknown function (DUF461) 26 130 5.4E-35 T 26-04-2016 IPR007410 DR1885-like metal-binding protein RGE_RS21595 e5655a2f920c875bc7132e21bc39e8d5 156 PANTHER PTHR36302 1 151 1.1E-25 T 26-04-2016 RGE_RS16695 ce50e83e9f45aab8787d73d9b626aaa5 129 SUPERFAMILY SSF159238 3 125 7.32E-36 T 26-04-2016 IPR023159 SO1590-like domain RGE_RS16695 ce50e83e9f45aab8787d73d9b626aaa5 129 Gene3D G3DSA:2.40.350.10 2 126 3.6E-40 T 26-04-2016 IPR023159 SO1590-like domain RGE_RS16695 ce50e83e9f45aab8787d73d9b626aaa5 129 Pfam PF11528 Protein of unknown function (DUF3224) 24 122 5.4E-34 T 26-04-2016 IPR021607 Protein of unknown function DUF3224 RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 Gene3D G3DSA:1.10.10.60 214 261 1.0E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 212 255 - T 26-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 Gene3D G3DSA:2.60.120.10 22 91 2.0E-10 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 Pfam PF02311 AraC-like ligand binding domain 27 106 2.4E-5 T 26-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 SMART SM00342 177 259 3.9E-22 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 SUPERFAMILY SSF46689 213 261 6.72E-9 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 Gene3D G3DSA:1.10.10.60 159 213 7.1E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 228 243 4.5E-5 T 26-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 243 259 4.5E-5 T 26-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 PANTHER PTHR11019:SF121 13 267 1.8E-86 T 26-04-2016 RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 PANTHER PTHR11019 13 267 1.8E-86 T 26-04-2016 RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 Pfam PF12833 Helix-turn-helix domain 183 261 6.2E-23 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS13845 edbb746208467e81bf57b8ad60264f70 269 SUPERFAMILY SSF51182 18 184 1.05E-12 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS21430 19627ba376fe83e2679ecb690ae4efec 286 Gene3D G3DSA:1.10.3150.10 27 284 7.9E-38 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS21430 19627ba376fe83e2679ecb690ae4efec 286 Pfam PF08668 HDOD domain 31 231 9.1E-18 T 26-04-2016 IPR013976 Metal-dependent hydrolase HDOD RGE_RS21430 19627ba376fe83e2679ecb690ae4efec 286 SUPERFAMILY SSF109604 22 283 2.76E-31 T 26-04-2016 RGE_RS07280 d99013c595ae4ca05956a1083bdb1100 300 PANTHER PTHR31752:SF13 107 298 1.8E-29 T 26-04-2016 RGE_RS07280 d99013c595ae4ca05956a1083bdb1100 300 Pfam PF03547 Membrane transport protein 153 290 3.5E-12 T 26-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RGE_RS07280 d99013c595ae4ca05956a1083bdb1100 300 PANTHER PTHR31752 107 298 1.8E-29 T 26-04-2016 RGE_RS06740 9f80e92a76e500f991fbd3c74b208a73 158 Pfam PF01467 Cytidylyltransferase-like 27 122 2.0E-14 T 26-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RGE_RS06740 9f80e92a76e500f991fbd3c74b208a73 158 SUPERFAMILY SSF52374 23 154 9.27E-22 T 26-04-2016 RGE_RS06740 9f80e92a76e500f991fbd3c74b208a73 158 Gene3D G3DSA:3.40.50.620 25 144 5.7E-30 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS06740 9f80e92a76e500f991fbd3c74b208a73 158 PANTHER PTHR10739 25 156 1.9E-34 T 26-04-2016 RGE_RS06740 9f80e92a76e500f991fbd3c74b208a73 158 PANTHER PTHR10739:SF26 25 156 1.9E-34 T 26-04-2016 RGE_RS06740 9f80e92a76e500f991fbd3c74b208a73 158 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 25 87 2.2E-13 T 26-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RGE_RS09320 948f15ecf0499c1d89c2f934c2989967 366 Gene3D G3DSA:3.40.710.10 47 352 3.8E-66 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS09320 948f15ecf0499c1d89c2f934c2989967 366 SUPERFAMILY SSF56601 40 351 7.96E-65 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS09320 948f15ecf0499c1d89c2f934c2989967 366 PANTHER PTHR22935 26 362 1.1E-47 T 26-04-2016 RGE_RS09320 948f15ecf0499c1d89c2f934c2989967 366 Pfam PF00144 Beta-lactamase 43 354 1.0E-49 T 26-04-2016 IPR001466 Beta-lactamase-related RGE_RS14175 38b3912adfd1ccadeaa1ba4fb6863942 499 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 4 408 2.6E-105 T 26-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RGE_RS14175 38b3912adfd1ccadeaa1ba4fb6863942 499 Gene3D G3DSA:3.20.20.80 3 495 4.3E-179 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS14175 38b3912adfd1ccadeaa1ba4fb6863942 499 SUPERFAMILY SSF51445 5 491 2.55E-167 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS14175 38b3912adfd1ccadeaa1ba4fb6863942 499 PANTHER PTHR32438:SF5 5 495 1.6E-157 T 26-04-2016 RGE_RS14175 38b3912adfd1ccadeaa1ba4fb6863942 499 Pfam PF02446 4-alpha-glucanotransferase 11 474 1.7E-156 T 26-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RGE_RS14175 38b3912adfd1ccadeaa1ba4fb6863942 499 PANTHER PTHR32438 5 495 1.6E-157 T 26-04-2016 RGE_RS04735 aa6b309ff6953c52c23a711a080949e5 414 SMART SM00304 175 228 7.7E-4 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS04735 aa6b309ff6953c52c23a711a080949e5 414 Pfam PF00990 Diguanylate cyclase, GGDEF domain 250 406 2.1E-42 T 26-04-2016 IPR000160 GGDEF domain RGE_RS04735 aa6b309ff6953c52c23a711a080949e5 414 PANTHER PTHR10799 156 406 4.8E-31 T 26-04-2016 RGE_RS04735 aa6b309ff6953c52c23a711a080949e5 414 Gene3D G3DSA:3.30.70.270 250 409 1.4E-50 T 26-04-2016 RGE_RS04735 aa6b309ff6953c52c23a711a080949e5 414 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 246 408 7.2E-44 T 26-04-2016 IPR000160 GGDEF domain RGE_RS04735 aa6b309ff6953c52c23a711a080949e5 414 Pfam PF17152 Periplasmic sensor domain 43 137 2.0E-17 T 26-04-2016 IPR033417 Periplasmic sensor domain CHASE8 UniPathway: UPA00599 RGE_RS04735 aa6b309ff6953c52c23a711a080949e5 414 PANTHER PTHR10799:SF774 156 406 4.8E-31 T 26-04-2016 RGE_RS04735 aa6b309ff6953c52c23a711a080949e5 414 SUPERFAMILY SSF55073 253 408 3.69E-44 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS04735 aa6b309ff6953c52c23a711a080949e5 414 SMART SM00267 237 410 1.5E-55 T 26-04-2016 IPR000160 GGDEF domain RGE_RS08110 7f869f85dc0e62d40cda06153f7e2248 179 Pfam PF13505 Outer membrane protein beta-barrel domain 22 179 3.3E-13 T 26-04-2016 IPR027385 Outer membrane protein beta-barrel RGE_RS08110 7f869f85dc0e62d40cda06153f7e2248 179 Gene3D G3DSA:2.40.160.20 12 179 4.2E-28 T 26-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RGE_RS08110 7f869f85dc0e62d40cda06153f7e2248 179 SUPERFAMILY SSF56925 22 179 9.42E-22 T 26-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RGE_RS21205 2eb526d82073d266dd29e6ddb2470f61 479 Pfam PF11981 Domain of unknown function (DUF3482) 175 424 2.2E-11 T 26-04-2016 IPR021871 Protein of unknown function DUF3482 RGE_RS21205 2eb526d82073d266dd29e6ddb2470f61 479 SUPERFAMILY SSF52540 4 161 9.26E-15 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21205 2eb526d82073d266dd29e6ddb2470f61 479 Gene3D G3DSA:3.40.50.300 4 184 9.9E-18 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21205 2eb526d82073d266dd29e6ddb2470f61 479 Pfam PF01926 50S ribosome-binding GTPase 8 148 1.5E-10 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS06790 fa751ab7253221d4614753ccb26760c5 382 Gene3D G3DSA:1.25.40.10 32 282 6.3E-19 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS06790 fa751ab7253221d4614753ccb26760c5 382 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 7 381 29.514 T 26-04-2016 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 RGE_RS06790 fa751ab7253221d4614753ccb26760c5 382 PANTHER PTHR23083 44 292 7.7E-12 T 26-04-2016 RGE_RS06790 fa751ab7253221d4614753ccb26760c5 382 SUPERFAMILY SSF48452 37 167 1.98E-11 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS06790 fa751ab7253221d4614753ccb26760c5 382 SUPERFAMILY SSF48452 176 339 1.12E-6 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS21955 465809ce6ba0e81ea642945cfe95ed8a 180 Pfam PF16036 Chalcone isomerase-like 36 177 1.3E-9 T 26-04-2016 IPR016087 Chalcone isomerase GO:0016872 RGE_RS05350 1725882bee3a572338fd278d63f92b49 105 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 52 8.6E-22 T 26-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RGE_RS05350 1725882bee3a572338fd278d63f92b49 105 SMART SM00834 1 42 4.1E-19 T 26-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RGE_RS05350 1725882bee3a572338fd278d63f92b49 105 Pfam PF09723 Zinc ribbon domain 1 41 9.5E-16 T 26-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RGE_RS05350 1725882bee3a572338fd278d63f92b49 105 PANTHER PTHR34404 2 59 1.1E-18 T 26-04-2016 RGE_RS05350 1725882bee3a572338fd278d63f92b49 105 PANTHER PTHR34404:SF2 2 59 1.1E-18 T 26-04-2016 RGE_RS02065 a9a770b7f28932ceb0bc360b3b97ce98 402 Pfam PF00534 Glycosyl transferases group 1 212 364 1.9E-32 T 26-04-2016 IPR001296 Glycosyl transferase, family 1 RGE_RS02065 a9a770b7f28932ceb0bc360b3b97ce98 402 Pfam PF13579 Glycosyl transferase 4-like domain 15 188 1.5E-22 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS02065 a9a770b7f28932ceb0bc360b3b97ce98 402 Gene3D G3DSA:3.40.50.2000 181 374 2.7E-33 T 26-04-2016 RGE_RS02065 a9a770b7f28932ceb0bc360b3b97ce98 402 PANTHER PTHR12526 1 402 5.4E-63 T 26-04-2016 RGE_RS02065 a9a770b7f28932ceb0bc360b3b97ce98 402 SUPERFAMILY SSF53756 3 397 4.32E-76 T 26-04-2016 RGE_RS02065 a9a770b7f28932ceb0bc360b3b97ce98 402 TIGRFAM TIGR04063 stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family 2 397 2.0E-194 T 26-04-2016 IPR024004 Glycosyltransferase family 1, Daro2409 family RGE_RS22565 0e311980550977aea1e9d777992a2c23 214 PANTHER PTHR23029 5 199 4.7E-50 T 26-04-2016 RGE_RS22565 0e311980550977aea1e9d777992a2c23 214 SUPERFAMILY SSF53254 1 200 7.66E-61 T 26-04-2016 IPR029033 Histidine phosphatase superfamily RGE_RS22565 0e311980550977aea1e9d777992a2c23 214 SMART SM00855 3 157 1.9E-24 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS22565 0e311980550977aea1e9d777992a2c23 214 PANTHER PTHR23029:SF1 5 199 4.7E-50 T 26-04-2016 RGE_RS22565 0e311980550977aea1e9d777992a2c23 214 Gene3D G3DSA:3.40.50.1240 1 203 4.8E-60 T 26-04-2016 IPR029033 Histidine phosphatase superfamily RGE_RS22565 0e311980550977aea1e9d777992a2c23 214 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 196 1.4E-63 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS10870 23c96f39f86a442ecf57c7b58e7964b2 300 Gene3D G3DSA:2.30.30.60 124 170 2.5E-15 T 26-04-2016 RGE_RS10870 23c96f39f86a442ecf57c7b58e7964b2 300 Pfam PF00924 Mechanosensitive ion channel 67 266 1.8E-39 T 26-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RGE_RS10870 23c96f39f86a442ecf57c7b58e7964b2 300 PANTHER PTHR30460:SF0 3 299 1.2E-83 T 26-04-2016 RGE_RS10870 23c96f39f86a442ecf57c7b58e7964b2 300 PANTHER PTHR30460 3 299 1.2E-83 T 26-04-2016 RGE_RS10870 23c96f39f86a442ecf57c7b58e7964b2 300 SUPERFAMILY SSF50182 109 170 1.18E-15 T 26-04-2016 IPR010920 LSM domain RGE_RS10870 23c96f39f86a442ecf57c7b58e7964b2 300 Gene3D G3DSA:3.30.70.100 181 264 6.0E-12 T 26-04-2016 RGE_RS10870 23c96f39f86a442ecf57c7b58e7964b2 300 SUPERFAMILY SSF82861 19 107 1.22E-10 T 26-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RGE_RS10870 23c96f39f86a442ecf57c7b58e7964b2 300 SUPERFAMILY SSF82689 178 274 2.09E-21 T 26-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RGE_RS06670 74f46235593645d5beeca5e444fe3e9b 113 SUPERFAMILY SSF54534 3 113 8.25E-41 T 26-04-2016 RGE_RS06670 74f46235593645d5beeca5e444fe3e9b 113 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 15 111 2.2E-35 T 26-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RGE_RS06670 74f46235593645d5beeca5e444fe3e9b 113 PANTHER PTHR10516 1 113 8.1E-55 T 26-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type RGE_RS06670 74f46235593645d5beeca5e444fe3e9b 113 Gene3D G3DSA:3.10.50.40 3 113 1.2E-45 T 26-04-2016 RGE_RS06680 402dbec4921e609c557d3b773bfc679b 326 Gene3D G3DSA:3.40.190.10 94 186 3.8E-20 T 26-04-2016 RGE_RS06680 402dbec4921e609c557d3b773bfc679b 326 PANTHER PTHR30126 8 326 3.4E-80 T 26-04-2016 RGE_RS06680 402dbec4921e609c557d3b773bfc679b 326 PANTHER PTHR30126:SF4 8 326 3.4E-80 T 26-04-2016 RGE_RS06680 402dbec4921e609c557d3b773bfc679b 326 Gene3D G3DSA:1.10.10.10 10 93 7.1E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS06680 402dbec4921e609c557d3b773bfc679b 326 Gene3D G3DSA:3.40.190.10 187 272 1.5E-10 T 26-04-2016 RGE_RS06680 402dbec4921e609c557d3b773bfc679b 326 SUPERFAMILY SSF53850 95 308 5.6E-26 T 26-04-2016 RGE_RS06680 402dbec4921e609c557d3b773bfc679b 326 Pfam PF03466 LysR substrate binding domain 134 294 1.6E-23 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS06680 402dbec4921e609c557d3b773bfc679b 326 SUPERFAMILY SSF46785 6 103 5.88E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS06680 402dbec4921e609c557d3b773bfc679b 326 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 68 1.1E-16 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS21970 85f4a89bcde97b67dbcf6ee9e0ff3eb1 261 Pfam PF00106 short chain dehydrogenase 15 201 1.4E-31 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS21970 85f4a89bcde97b67dbcf6ee9e0ff3eb1 261 SUPERFAMILY SSF51735 6 244 1.07E-51 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS21970 85f4a89bcde97b67dbcf6ee9e0ff3eb1 261 PANTHER PTHR24322 17 193 1.5E-28 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS21970 85f4a89bcde97b67dbcf6ee9e0ff3eb1 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 3.2E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS21970 85f4a89bcde97b67dbcf6ee9e0ff3eb1 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 3.2E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS21970 85f4a89bcde97b67dbcf6ee9e0ff3eb1 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 3.2E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS21970 85f4a89bcde97b67dbcf6ee9e0ff3eb1 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 3.2E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS21970 85f4a89bcde97b67dbcf6ee9e0ff3eb1 261 Gene3D G3DSA:3.40.50.720 12 227 3.8E-49 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS17675 3e692cc937bdb45526c41a1f7612d319 165 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 64 162 4.0E-4 T 26-04-2016 RGE_RS17675 3e692cc937bdb45526c41a1f7612d319 165 SUPERFAMILY SSF49503 54 164 2.65E-31 T 26-04-2016 IPR008972 Cupredoxin RGE_RS17675 3e692cc937bdb45526c41a1f7612d319 165 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 62 164 2.0E-11 T 26-04-2016 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 RGE_RS17675 3e692cc937bdb45526c41a1f7612d319 165 Gene3D G3DSA:2.60.40.420 46 164 7.3E-38 T 26-04-2016 IPR008972 Cupredoxin RGE_RS17675 3e692cc937bdb45526c41a1f7612d319 165 ProSitePatterns PS00079 Multicopper oxidases signature 1. 142 162 - T 26-04-2016 IPR033138 Multicopper oxidases, conserved site RGE_RS12175 a069e15eaae483c54712e58fbdf11755 343 Pfam PF03060 Nitronate monooxygenase 9 337 1.8E-58 T 26-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RGE_RS12175 a069e15eaae483c54712e58fbdf11755 343 PANTHER PTHR32332 9 71 3.9E-98 T 26-04-2016 RGE_RS12175 a069e15eaae483c54712e58fbdf11755 343 PANTHER PTHR32332 104 342 3.9E-98 T 26-04-2016 RGE_RS12175 a069e15eaae483c54712e58fbdf11755 343 PANTHER PTHR32332:SF12 9 71 3.9E-98 T 26-04-2016 RGE_RS12175 a069e15eaae483c54712e58fbdf11755 343 PANTHER PTHR32332:SF12 104 342 3.9E-98 T 26-04-2016 RGE_RS12175 a069e15eaae483c54712e58fbdf11755 343 SUPERFAMILY SSF51412 8 321 7.78E-49 T 26-04-2016 RGE_RS12175 a069e15eaae483c54712e58fbdf11755 343 Gene3D G3DSA:3.20.20.70 8 328 3.3E-49 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS01675 43880a2f02559ecaedcbe19d1b1d5e37 187 SUPERFAMILY SSF55282 11 187 5.42E-76 T 26-04-2016 IPR022803 Ribosomal protein L5 domain RGE_RS01675 43880a2f02559ecaedcbe19d1b1d5e37 187 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 9 187 43.163 T 26-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01675 43880a2f02559ecaedcbe19d1b1d5e37 187 Pfam PF00281 Ribosomal protein L5 32 88 8.1E-27 T 26-04-2016 IPR031310 Ribosomal protein L5, N-terminal RGE_RS01675 43880a2f02559ecaedcbe19d1b1d5e37 187 Pfam PF00673 ribosomal L5P family C-terminus 92 185 7.8E-39 T 26-04-2016 IPR031309 Ribosomal protein L5, C-terminal RGE_RS01675 43880a2f02559ecaedcbe19d1b1d5e37 187 PIRSF PIRSF002161 5 187 2.2E-62 T 26-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 RGE_RS01675 43880a2f02559ecaedcbe19d1b1d5e37 187 PANTHER PTHR11994 1 186 2.0E-93 T 26-04-2016 RGE_RS01675 43880a2f02559ecaedcbe19d1b1d5e37 187 ProSitePatterns PS00358 Ribosomal protein L5 signature. 65 81 - T 26-04-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01675 43880a2f02559ecaedcbe19d1b1d5e37 187 Gene3D G3DSA:3.30.1440.10 10 187 7.3E-76 T 26-04-2016 IPR022803 Ribosomal protein L5 domain RGE_RS12385 26eb6e50d01a5fb25b1a7886af7319e2 289 PIRSF PIRSF000363 4 277 3.8E-101 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS12385 26eb6e50d01a5fb25b1a7886af7319e2 289 PANTHER PTHR13696 8 260 1.1E-104 T 26-04-2016 RGE_RS12385 26eb6e50d01a5fb25b1a7886af7319e2 289 PRINTS PR00091 Nitrogenase component II signature 11 24 1.7E-33 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS12385 26eb6e50d01a5fb25b1a7886af7319e2 289 PRINTS PR00091 Nitrogenase component II signature 85 99 1.7E-33 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS12385 26eb6e50d01a5fb25b1a7886af7319e2 289 PRINTS PR00091 Nitrogenase component II signature 33 48 1.7E-33 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS12385 26eb6e50d01a5fb25b1a7886af7319e2 289 PRINTS PR00091 Nitrogenase component II signature 125 140 1.7E-33 T 26-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RGE_RS12385 26eb6e50d01a5fb25b1a7886af7319e2 289 Gene3D G3DSA:3.40.50.300 8 270 1.6E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12385 26eb6e50d01a5fb25b1a7886af7319e2 289 PANTHER PTHR13696:SF72 8 260 1.1E-104 T 26-04-2016 RGE_RS12385 26eb6e50d01a5fb25b1a7886af7319e2 289 SUPERFAMILY SSF52540 6 280 4.09E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12385 26eb6e50d01a5fb25b1a7886af7319e2 289 ProSitePatterns PS00746 NifH/frxC family signature 1. 87 99 - T 26-04-2016 IPR030655 NifH/chlL conserved site RGE_RS12385 26eb6e50d01a5fb25b1a7886af7319e2 289 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 7 268 8.3E-94 T 26-04-2016 RGE_RS12385 26eb6e50d01a5fb25b1a7886af7319e2 289 ProSitePatterns PS00692 NifH/frxC family signature 2. 126 139 - T 26-04-2016 IPR030655 NifH/chlL conserved site RGE_RS15540 fca8ec83904257a8e55c5de9e623c4f8 479 PANTHER PTHR10422 12 466 5.5E-281 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS15540 fca8ec83904257a8e55c5de9e623c4f8 479 PANTHER PTHR10422:SF21 12 466 5.5E-281 T 26-04-2016 RGE_RS15540 fca8ec83904257a8e55c5de9e623c4f8 479 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 206 261 - T 26-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS15540 fca8ec83904257a8e55c5de9e623c4f8 479 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 17 477 8.8E-232 T 26-04-2016 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS15540 fca8ec83904257a8e55c5de9e623c4f8 479 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 18 445 1.6E-116 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS15540 fca8ec83904257a8e55c5de9e623c4f8 479 Gene3D G3DSA:1.20.210.10 18 469 1.3E-71 T 26-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS15540 fca8ec83904257a8e55c5de9e623c4f8 479 SUPERFAMILY SSF81442 12 470 8.76E-126 T 26-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS19955 5fbdba55a0cbcb7d7bc0be2254b7e3c7 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 99 115 1.0E-13 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS19955 5fbdba55a0cbcb7d7bc0be2254b7e3c7 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 79 1.0E-13 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS19955 5fbdba55a0cbcb7d7bc0be2254b7e3c7 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 95 1.0E-13 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS19955 5fbdba55a0cbcb7d7bc0be2254b7e3c7 163 PRINTS PR00598 Bacterial regulatory protein MarR family signature 129 149 1.0E-13 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS19955 5fbdba55a0cbcb7d7bc0be2254b7e3c7 163 PANTHER PTHR33164 22 161 2.4E-27 T 26-04-2016 RGE_RS19955 5fbdba55a0cbcb7d7bc0be2254b7e3c7 163 Gene3D G3DSA:1.10.10.10 17 155 5.7E-37 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19955 5fbdba55a0cbcb7d7bc0be2254b7e3c7 163 PANTHER PTHR33164:SF16 22 161 2.4E-27 T 26-04-2016 RGE_RS19955 5fbdba55a0cbcb7d7bc0be2254b7e3c7 163 SMART SM00347 39 139 2.7E-18 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS19955 5fbdba55a0cbcb7d7bc0be2254b7e3c7 163 SUPERFAMILY SSF46785 17 153 1.04E-34 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19955 5fbdba55a0cbcb7d7bc0be2254b7e3c7 163 ProSitePatterns PS01117 MarR-type HTH domain signature. 78 112 - T 26-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site RGE_RS19955 5fbdba55a0cbcb7d7bc0be2254b7e3c7 163 Pfam PF01047 MarR family 46 104 1.1E-13 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS08205 ca8c6f9e29d0a4ed40c1e5498fe58349 266 Pfam PF02649 Type I GTP cyclohydrolase folE2 10 262 3.1E-81 T 26-04-2016 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RGE_RS08205 ca8c6f9e29d0a4ed40c1e5498fe58349 266 Gene3D G3DSA:3.10.270.10 9 265 1.7E-96 T 26-04-2016 RGE_RS08205 ca8c6f9e29d0a4ed40c1e5498fe58349 266 PANTHER PTHR36445 5 265 3.7E-65 T 26-04-2016 RGE_RS08205 ca8c6f9e29d0a4ed40c1e5498fe58349 266 PANTHER PTHR36445:SF1 5 265 3.7E-65 T 26-04-2016 RGE_RS08205 ca8c6f9e29d0a4ed40c1e5498fe58349 266 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 10 266 33.93 T 26-04-2016 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RGE_RS07585 e43bfae695c8c8ab4955c653edd7c50b 107 SUPERFAMILY SSF89360 1 95 1.7E-31 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS07585 e43bfae695c8c8ab4955c653edd7c50b 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 1.7E-51 T 26-04-2016 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0016226|GO:0051536 RGE_RS07585 e43bfae695c8c8ab4955c653edd7c50b 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 26-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site RGE_RS07585 e43bfae695c8c8ab4955c653edd7c50b 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 1.4E-35 T 26-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RGE_RS07585 e43bfae695c8c8ab4955c653edd7c50b 107 PANTHER PTHR10072 1 107 7.2E-45 T 26-04-2016 RGE_RS07585 e43bfae695c8c8ab4955c653edd7c50b 107 PANTHER PTHR10072:SF48 1 107 7.2E-45 T 26-04-2016 IPR031108 FeS assembly protein IscA-like GO:0005198|GO:0016226|GO:0051536 RGE_RS07585 e43bfae695c8c8ab4955c653edd7c50b 107 Gene3D G3DSA:2.60.300.12 2 95 1.3E-33 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS07585 e43bfae695c8c8ab4955c653edd7c50b 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 4.3E-22 T 26-04-2016 IPR000361 FeS cluster biogenesis RGE_RS03175 d5186d7bd822d4a556fd5beb15ed8615 152 Gene3D G3DSA:3.40.630.30 2 125 1.0E-12 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS03175 d5186d7bd822d4a556fd5beb15ed8615 152 Pfam PF00583 Acetyltransferase (GNAT) family 57 125 2.1E-5 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS03175 d5186d7bd822d4a556fd5beb15ed8615 152 SUPERFAMILY SSF55729 8 124 1.1E-12 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS07180 a7ba0bf3d53382f803d0ce6d67ca83f4 267 SUPERFAMILY SSF53474 36 239 1.39E-29 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07180 a7ba0bf3d53382f803d0ce6d67ca83f4 267 Gene3D G3DSA:3.40.50.1820 39 238 5.7E-25 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07180 a7ba0bf3d53382f803d0ce6d67ca83f4 267 Pfam PF12146 Serine aminopeptidase, S33 60 169 1.3E-8 T 26-04-2016 IPR022742 Serine aminopeptidase, S33 RGE_RS13240 4a0a0346069394897811dc476cfe70e9 259 SUPERFAMILY SSF75217 116 254 4.64E-36 T 26-04-2016 IPR029028 Alpha/beta knot methyltransferases RGE_RS13240 4a0a0346069394897811dc476cfe70e9 259 SUPERFAMILY SSF55315 6 104 1.67E-9 T 26-04-2016 IPR029064 50S ribosomal protein L30e-like RGE_RS13240 4a0a0346069394897811dc476cfe70e9 259 Gene3D G3DSA:3.30.1330.30 6 99 1.2E-7 T 26-04-2016 IPR029064 50S ribosomal protein L30e-like RGE_RS13240 4a0a0346069394897811dc476cfe70e9 259 Pfam PF00588 SpoU rRNA Methylase family 117 251 6.2E-31 T 26-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RGE_RS13240 4a0a0346069394897811dc476cfe70e9 259 Gene3D G3DSA:3.40.1280.10 117 254 2.9E-41 T 26-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RGE_RS13240 4a0a0346069394897811dc476cfe70e9 259 PANTHER PTHR12029 4 252 1.6E-39 T 26-04-2016 RGE_RS19920 b77865bbba38ecadf324d52d26d0655f 627 PANTHER PTHR11649:SF37 211 622 8.2E-232 T 26-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 RGE_RS19920 b77865bbba38ecadf324d52d26d0655f 627 PANTHER PTHR11649:SF37 18 164 8.2E-232 T 26-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 RGE_RS19920 b77865bbba38ecadf324d52d26d0655f 627 SUPERFAMILY SSF52540 18 180 6.0E-32 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19920 b77865bbba38ecadf324d52d26d0655f 627 Pfam PF07664 Ferrous iron transport protein B C terminus 407 460 5.2E-16 T 26-04-2016 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 RGE_RS19920 b77865bbba38ecadf324d52d26d0655f 627 PANTHER PTHR11649 211 622 8.2E-232 T 26-04-2016 RGE_RS19920 b77865bbba38ecadf324d52d26d0655f 627 PANTHER PTHR11649 18 164 8.2E-232 T 26-04-2016 RGE_RS19920 b77865bbba38ecadf324d52d26d0655f 627 Gene3D G3DSA:3.40.50.300 17 175 9.5E-29 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19920 b77865bbba38ecadf324d52d26d0655f 627 Pfam PF07670 Nucleoside recognition 465 597 1.1E-25 T 26-04-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 RGE_RS19920 b77865bbba38ecadf324d52d26d0655f 627 Pfam PF07670 Nucleoside recognition 296 387 6.1E-11 T 26-04-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 RGE_RS19920 b77865bbba38ecadf324d52d26d0655f 627 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 18 38 8.3E-7 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS19920 b77865bbba38ecadf324d52d26d0655f 627 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 39 57 8.3E-7 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS19920 b77865bbba38ecadf324d52d26d0655f 627 Pfam PF02421 Ferrous iron transport protein B 18 173 2.9E-53 T 26-04-2016 IPR011619 Ferrous iron transport protein B, N-terminal GO:0005525|GO:0015093|GO:0015684|GO:0016021 RGE_RS03825 6d64f0229a9104c1ecaa10666cc378d9 308 Pfam PF06189 5'-nucleotidase 47 305 1.0E-105 T 26-04-2016 IPR010394 5-nucleotidase GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|Reactome: REACT_1698 RGE_RS03825 6d64f0229a9104c1ecaa10666cc378d9 308 PANTHER PTHR31367 15 305 1.5E-105 T 26-04-2016 RGE_RS03825 6d64f0229a9104c1ecaa10666cc378d9 308 PANTHER PTHR31367:SF5 15 305 1.5E-105 T 26-04-2016 RGE_RS07265 6d8cdd5db81f61da4433c87bcfe281c8 448 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 217 433 3.0E-48 T 26-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RGE_RS07265 6d8cdd5db81f61da4433c87bcfe281c8 448 SUPERFAMILY SSF53187 360 436 6.28E-55 T 26-04-2016 RGE_RS07265 6d8cdd5db81f61da4433c87bcfe281c8 448 SUPERFAMILY SSF53187 216 311 6.28E-55 T 26-04-2016 RGE_RS07265 6d8cdd5db81f61da4433c87bcfe281c8 448 PANTHER PTHR30404:SF0 160 445 2.4E-101 T 26-04-2016 RGE_RS07265 6d8cdd5db81f61da4433c87bcfe281c8 448 PANTHER PTHR30404:SF0 28 141 2.4E-101 T 26-04-2016 RGE_RS07265 6d8cdd5db81f61da4433c87bcfe281c8 448 Gene3D G3DSA:3.40.630.40 361 436 8.4E-60 T 26-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RGE_RS07265 6d8cdd5db81f61da4433c87bcfe281c8 448 Gene3D G3DSA:3.40.630.40 216 312 8.4E-60 T 26-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RGE_RS07265 6d8cdd5db81f61da4433c87bcfe281c8 448 Pfam PF11741 AMIN domain 31 134 1.6E-22 T 26-04-2016 IPR021731 AMIN domain RGE_RS07265 6d8cdd5db81f61da4433c87bcfe281c8 448 SMART SM00646 277 433 1.7E-56 T 26-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RGE_RS07265 6d8cdd5db81f61da4433c87bcfe281c8 448 PANTHER PTHR30404 160 445 2.4E-101 T 26-04-2016 RGE_RS07265 6d8cdd5db81f61da4433c87bcfe281c8 448 PANTHER PTHR30404 28 141 2.4E-101 T 26-04-2016 RGE_RS18225 7db12d0a64b4ab79f913482ac4121825 124 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 13 96 9.4E-20 T 26-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 RGE_RS18225 7db12d0a64b4ab79f913482ac4121825 124 Pfam PF03334 Na+/H+ antiporter subunit 13 93 8.2E-19 T 26-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 RGE_RS18225 7db12d0a64b4ab79f913482ac4121825 124 PANTHER PTHR34703 3 95 7.8E-15 T 26-04-2016 RGE_RS18225 7db12d0a64b4ab79f913482ac4121825 124 PANTHER PTHR34703:SF1 3 95 7.8E-15 T 26-04-2016 RGE_RS09865 b2ba741e32a5b2e9abc3830cc13fd2c7 149 Gene3D G3DSA:3.90.1590.10 5 134 1.4E-28 T 26-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RGE_RS09865 b2ba741e32a5b2e9abc3830cc13fd2c7 149 PANTHER PTHR33337 4 127 2.9E-18 T 26-04-2016 RGE_RS09865 b2ba741e32a5b2e9abc3830cc13fd2c7 149 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 32 119 7.2E-15 T 26-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RGE_RS09865 b2ba741e32a5b2e9abc3830cc13fd2c7 149 SUPERFAMILY SSF51316 5 134 7.32E-32 T 26-04-2016 IPR011057 Mss4-like RGE_RS09865 b2ba741e32a5b2e9abc3830cc13fd2c7 149 PANTHER PTHR33337:SF4 4 127 2.9E-18 T 26-04-2016 RGE_RS00120 f96c1adb7036986998b03ebcb9f4eaec 272 PANTHER PTHR38106:SF1 37 174 1.5E-12 T 26-04-2016 RGE_RS00120 f96c1adb7036986998b03ebcb9f4eaec 272 SMART SM00945 42 151 4.6E-21 T 26-04-2016 IPR016103 ProQ/FinO domain RGE_RS00120 f96c1adb7036986998b03ebcb9f4eaec 272 SUPERFAMILY SSF48657 45 139 2.49E-23 T 26-04-2016 IPR016103 ProQ/FinO domain RGE_RS00120 f96c1adb7036986998b03ebcb9f4eaec 272 PANTHER PTHR38106 37 174 1.5E-12 T 26-04-2016 RGE_RS00120 f96c1adb7036986998b03ebcb9f4eaec 272 Gene3D G3DSA:1.10.1710.10 14 147 4.1E-26 T 26-04-2016 IPR016103 ProQ/FinO domain RGE_RS00120 f96c1adb7036986998b03ebcb9f4eaec 272 Pfam PF04352 ProQ/FINO family 47 147 1.3E-24 T 26-04-2016 IPR016103 ProQ/FinO domain RGE_RS17240 33c3afd8fe3c974cb18c8465991766a8 225 PANTHER PTHR30471 1 225 4.5E-102 T 26-04-2016 RGE_RS17240 33c3afd8fe3c974cb18c8465991766a8 225 Gene3D G3DSA:3.40.140.10 102 224 6.0E-48 T 26-04-2016 RGE_RS17240 33c3afd8fe3c974cb18c8465991766a8 225 Pfam PF04002 RadC-like JAB domain 105 224 3.4E-43 T 26-04-2016 IPR025657 RadC-like JAB domain RGE_RS17240 33c3afd8fe3c974cb18c8465991766a8 225 PANTHER PTHR30471:SF5 1 225 4.5E-102 T 26-04-2016 RGE_RS17240 33c3afd8fe3c974cb18c8465991766a8 225 TIGRFAM TIGR00608 radc: DNA repair protein RadC 12 224 1.8E-70 T 26-04-2016 IPR001405 RadC protein RGE_RS17240 33c3afd8fe3c974cb18c8465991766a8 225 SUPERFAMILY SSF47781 18 89 2.37E-5 T 26-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RGE_RS17240 33c3afd8fe3c974cb18c8465991766a8 225 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 174 179 - T 26-04-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site RGE_RS19550 fbc1a5841db264bac94dce24ce2a14e0 618 PANTHER PTHR11804:SF8 157 618 4.9E-89 T 26-04-2016 RGE_RS19550 fbc1a5841db264bac94dce24ce2a14e0 618 Gene3D G3DSA:1.10.1370.10 431 581 5.5E-7 T 26-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RGE_RS19550 fbc1a5841db264bac94dce24ce2a14e0 618 Pfam PF01432 Peptidase family M3 213 593 2.3E-58 T 26-04-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 RGE_RS19550 fbc1a5841db264bac94dce24ce2a14e0 618 PANTHER PTHR11804 157 618 4.9E-89 T 26-04-2016 RGE_RS19550 fbc1a5841db264bac94dce24ce2a14e0 618 TIGRFAM TIGR00181 pepF: oligoendopeptidase F 15 607 6.6E-169 T 26-04-2016 IPR004438 Peptidase M3B, oligoendopeptidase F GO:0004222|GO:0006508 RGE_RS19550 fbc1a5841db264bac94dce24ce2a14e0 618 Pfam PF08439 Oligopeptidase F 122 191 5.3E-17 T 26-04-2016 IPR013647 Oligopeptidase F, N-terminal domain RGE_RS19550 fbc1a5841db264bac94dce24ce2a14e0 618 SUPERFAMILY SSF55486 11 589 2.62E-104 T 26-04-2016 RGE_RS19550 fbc1a5841db264bac94dce24ce2a14e0 618 Gene3D G3DSA:3.40.390.10 357 430 5.6E-5 T 26-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RGE_RS14825 2c04b96cb6e25b10850ccf4592a7812e 172 PANTHER PTHR30173 10 164 3.2E-34 T 26-04-2016 RGE_RS14825 2c04b96cb6e25b10850ccf4592a7812e 172 Gene3D G3DSA:1.10.1740.10 10 103 1.4E-9 T 26-04-2016 RGE_RS14825 2c04b96cb6e25b10850ccf4592a7812e 172 SUPERFAMILY SSF88659 106 165 3.05E-13 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14825 2c04b96cb6e25b10850ccf4592a7812e 172 PANTHER PTHR30173:SF9 10 164 3.2E-34 T 26-04-2016 RGE_RS14825 2c04b96cb6e25b10850ccf4592a7812e 172 Gene3D G3DSA:1.10.10.10 111 164 4.9E-14 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14825 2c04b96cb6e25b10850ccf4592a7812e 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 162 1.7E-18 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14825 2c04b96cb6e25b10850ccf4592a7812e 172 Pfam PF08281 Sigma-70, region 4 112 164 2.8E-15 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14825 2c04b96cb6e25b10850ccf4592a7812e 172 SUPERFAMILY SSF88946 12 101 1.26E-11 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14825 2c04b96cb6e25b10850ccf4592a7812e 172 Pfam PF04542 Sigma-70 region 2 16 80 1.2E-10 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS19465 1125375e161a0e2943ee80f327183c9b 117 PANTHER PTHR10395:SF7 1 117 1.5E-42 T 26-04-2016 RGE_RS19465 1125375e161a0e2943ee80f327183c9b 117 Pfam PF00576 HIUase/Transthyretin family 4 116 9.4E-34 T 26-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily RGE_RS19465 1125375e161a0e2943ee80f327183c9b 117 ProSitePatterns PS00768 Transthyretin signature 1. 7 22 - T 26-04-2016 IPR023418 Transthyretin, thyroxine binding site RGE_RS19465 1125375e161a0e2943ee80f327183c9b 117 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 2 117 1.6E-37 T 26-04-2016 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394 RGE_RS19465 1125375e161a0e2943ee80f327183c9b 117 PANTHER PTHR10395 1 117 1.5E-42 T 26-04-2016 RGE_RS19465 1125375e161a0e2943ee80f327183c9b 117 SUPERFAMILY SSF49472 1 117 1.24E-39 T 26-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily RGE_RS19465 1125375e161a0e2943ee80f327183c9b 117 Gene3D G3DSA:2.60.40.180 2 117 1.4E-35 T 26-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily RGE_RS19465 1125375e161a0e2943ee80f327183c9b 117 PRINTS PR00189 Transthyretin signature 95 117 6.7E-6 T 26-04-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase RGE_RS19465 1125375e161a0e2943ee80f327183c9b 117 PRINTS PR00189 Transthyretin signature 3 23 6.7E-6 T 26-04-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase RGE_RS04755 14e30cecc7988b2c0fbc5b18d4acf0f9 818 Gene3D G3DSA:2.130.10.10 496 607 3.5E-9 T 26-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RGE_RS04755 14e30cecc7988b2c0fbc5b18d4acf0f9 818 Gene3D G3DSA:2.130.10.10 648 811 9.3E-12 T 26-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RGE_RS04755 14e30cecc7988b2c0fbc5b18d4acf0f9 818 SUPERFAMILY SSF50969 640 807 7.46E-16 T 26-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like RGE_RS04755 14e30cecc7988b2c0fbc5b18d4acf0f9 818 SUPERFAMILY SSF50969 534 606 7.46E-16 T 26-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like RGE_RS11720 ab7ac8b95530c7f2f823fe06c5e94878 273 PANTHER PTHR19136 14 272 1.5E-120 T 26-04-2016 RGE_RS11720 ab7ac8b95530c7f2f823fe06c5e94878 273 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 176 210 2.6E-13 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS11720 ab7ac8b95530c7f2f823fe06c5e94878 273 Gene3D G3DSA:2.160.10.10 95 255 1.0E-56 T 26-04-2016 RGE_RS11720 ab7ac8b95530c7f2f823fe06c5e94878 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 135 163 - T 26-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RGE_RS11720 ab7ac8b95530c7f2f823fe06c5e94878 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 134 167 0.0014 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS11720 ab7ac8b95530c7f2f823fe06c5e94878 273 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 4 70 1.4E-24 T 26-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RGE_RS11720 ab7ac8b95530c7f2f823fe06c5e94878 273 PANTHER PTHR19136:SF52 14 272 1.5E-120 T 26-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RGE_RS11720 ab7ac8b95530c7f2f823fe06c5e94878 273 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 2 273 55.337 T 26-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RGE_RS11720 ab7ac8b95530c7f2f823fe06c5e94878 273 Gene3D G3DSA:1.10.166.10 2 71 2.8E-29 T 26-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RGE_RS11720 ab7ac8b95530c7f2f823fe06c5e94878 273 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 272 1.0E-138 T 26-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RGE_RS11720 ab7ac8b95530c7f2f823fe06c5e94878 273 SUPERFAMILY SSF51161 3 257 2.77E-69 T 26-04-2016 IPR011004 Trimeric LpxA-like RGE_RS01170 708d5f9dae5df616229f4aabfd2f3f56 277 PIRSF PIRSF016184 1 277 2.7E-71 T 26-04-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- RGE_RS01170 708d5f9dae5df616229f4aabfd2f3f56 277 PANTHER PTHR13774 1 277 3.1E-91 T 26-04-2016 RGE_RS01170 708d5f9dae5df616229f4aabfd2f3f56 277 PANTHER PTHR13774:SF18 1 277 3.1E-91 T 26-04-2016 RGE_RS01170 708d5f9dae5df616229f4aabfd2f3f56 277 Gene3D G3DSA:3.10.310.10 125 266 3.4E-42 T 26-04-2016 RGE_RS01170 708d5f9dae5df616229f4aabfd2f3f56 277 Gene3D G3DSA:3.10.310.10 4 124 5.7E-41 T 26-04-2016 RGE_RS01170 708d5f9dae5df616229f4aabfd2f3f56 277 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 5 255 1.5E-50 T 26-04-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- RGE_RS01170 708d5f9dae5df616229f4aabfd2f3f56 277 Pfam PF02567 Phenazine biosynthesis-like protein 9 263 4.1E-52 T 26-04-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- RGE_RS01170 708d5f9dae5df616229f4aabfd2f3f56 277 SUPERFAMILY SSF54506 5 276 8.37E-72 T 26-04-2016 RGE_RS16680 c50cc679a2df4175f10c016153e0875a 220 PANTHER PTHR10655 1 215 3.4E-71 T 26-04-2016 RGE_RS16680 c50cc679a2df4175f10c016153e0875a 220 Pfam PF02230 Phospholipase/Carboxylesterase 11 217 2.0E-49 T 26-04-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 RGE_RS16680 c50cc679a2df4175f10c016153e0875a 220 SUPERFAMILY SSF53474 11 219 3.43E-48 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS16680 c50cc679a2df4175f10c016153e0875a 220 PANTHER PTHR10655:SF17 1 215 3.4E-71 T 26-04-2016 RGE_RS16680 c50cc679a2df4175f10c016153e0875a 220 Gene3D G3DSA:3.40.50.1820 10 219 1.9E-63 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS01660 6aeda123f2dbcc3eed962223f61074db 172 Gene3D G3DSA:3.40.30.10 1 167 7.3E-58 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS01660 6aeda123f2dbcc3eed962223f61074db 172 Pfam PF08534 Redoxin 5 163 2.7E-35 T 26-04-2016 IPR013740 Redoxin GO:0016491 RGE_RS01660 6aeda123f2dbcc3eed962223f61074db 172 SUPERFAMILY SSF52833 1 166 4.93E-31 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS01660 6aeda123f2dbcc3eed962223f61074db 172 PANTHER PTHR10430 2 171 6.8E-74 T 26-04-2016 RGE_RS10285 bdfd32543857a14d396dcda64aa2000a 359 Pfam PF02515 CoA-transferase family III 5 342 6.6E-78 T 26-04-2016 IPR003673 CoA-transferase family III GO:0003824 RGE_RS10285 bdfd32543857a14d396dcda64aa2000a 359 Gene3D G3DSA:3.40.50.10540 289 345 5.6E-87 T 26-04-2016 IPR023606 CoA-transferase family III domain RGE_RS10285 bdfd32543857a14d396dcda64aa2000a 359 Gene3D G3DSA:3.40.50.10540 2 203 5.6E-87 T 26-04-2016 IPR023606 CoA-transferase family III domain RGE_RS10285 bdfd32543857a14d396dcda64aa2000a 359 PANTHER PTHR24023 32 339 5.2E-102 T 26-04-2016 RGE_RS10285 bdfd32543857a14d396dcda64aa2000a 359 SUPERFAMILY SSF89796 3 345 7.85E-106 T 26-04-2016 IPR023606 CoA-transferase family III domain RGE_RS10285 bdfd32543857a14d396dcda64aa2000a 359 PANTHER PTHR24023:SF591 32 339 5.2E-102 T 26-04-2016 RGE_RS10285 bdfd32543857a14d396dcda64aa2000a 359 Gene3D G3DSA:3.30.1540.10 219 288 1.9E-10 T 26-04-2016 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 SUPERFAMILY SSF58104 255 518 3.75E-67 T 26-04-2016 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 Gene3D G3DSA:1.10.287.950 285 489 5.0E-55 T 26-04-2016 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 PANTHER PTHR32089 162 520 8.8E-124 T 26-04-2016 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 PANTHER PTHR32089:SF63 162 520 8.8E-124 T 26-04-2016 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 SMART SM01049 34 131 5.2E-30 T 26-04-2016 IPR033480 Single Cache domain 2 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 329 516 2.2E-59 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 SMART SM00283 270 517 9.3E-89 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 Pfam PF17200 Single Cache domain 2 39 185 3.7E-30 T 26-04-2016 IPR033480 Single Cache domain 2 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 Gene3D G3DSA:3.30.450.20 23 183 2.7E-34 T 26-04-2016 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 397 426 3.4E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 291 320 3.4E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 368 395 3.4E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS09920 cd925554023f6d63d27678291eb100c7 523 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 445 474 3.4E-45 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS12540 805360867315dc793504ec75dd866bc7 109 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 8 83 1.7E-16 T 26-04-2016 IPR017734 Type VI secretion system, lipoprotein SciN RGE_RS12540 805360867315dc793504ec75dd866bc7 109 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 8 86 3.7E-14 T 26-04-2016 IPR017734 Type VI secretion system, lipoprotein SciN RGE_RS09480 c6d4becc4683e0623b049f2d0d2ba6dd 199 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 198 32.41 T 26-04-2016 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 RGE_RS09480 c6d4becc4683e0623b049f2d0d2ba6dd 199 Pfam PF02525 Flavodoxin-like fold 1 196 1.9E-50 T 26-04-2016 IPR003680 Flavodoxin-like fold RGE_RS09480 c6d4becc4683e0623b049f2d0d2ba6dd 199 PANTHER PTHR10204 1 199 2.7E-73 T 26-04-2016 RGE_RS09480 c6d4becc4683e0623b049f2d0d2ba6dd 199 Gene3D G3DSA:3.40.50.360 1 196 1.3E-67 T 26-04-2016 IPR029039 Flavoprotein-like domain RGE_RS09480 c6d4becc4683e0623b049f2d0d2ba6dd 199 SUPERFAMILY SSF52218 1 197 3.42E-59 T 26-04-2016 IPR029039 Flavoprotein-like domain RGE_RS09480 c6d4becc4683e0623b049f2d0d2ba6dd 199 PANTHER PTHR10204:SF16 1 199 2.7E-73 T 26-04-2016 RGE_RS11860 59ad7e13cde9c99d1296badbd80887d3 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 222 244 5.5E-8 T 26-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RGE_RS11860 59ad7e13cde9c99d1296badbd80887d3 254 Pfam PF00005 ABC transporter 22 175 1.4E-27 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS11860 59ad7e13cde9c99d1296badbd80887d3 254 Gene3D G3DSA:3.40.50.300 3 242 4.9E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11860 59ad7e13cde9c99d1296badbd80887d3 254 SMART SM00382 29 222 1.9E-10 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11860 59ad7e13cde9c99d1296badbd80887d3 254 PANTHER PTHR24220:SF358 6 245 2.8E-85 T 26-04-2016 RGE_RS11860 59ad7e13cde9c99d1296badbd80887d3 254 PANTHER PTHR24220 6 245 2.8E-85 T 26-04-2016 RGE_RS11860 59ad7e13cde9c99d1296badbd80887d3 254 SUPERFAMILY SSF52540 4 244 2.49E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS14260 a045e299f74bfaef9def377387eb7ed1 693 PANTHER PTHR32552:SF36 18 693 1.5E-182 T 26-04-2016 RGE_RS14260 a045e299f74bfaef9def377387eb7ed1 693 Pfam PF00593 TonB dependent receptor 451 690 4.5E-13 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14260 a045e299f74bfaef9def377387eb7ed1 693 PANTHER PTHR32552 18 693 1.5E-182 T 26-04-2016 RGE_RS14260 a045e299f74bfaef9def377387eb7ed1 693 Gene3D G3DSA:2.170.130.10 60 175 1.6E-17 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14260 a045e299f74bfaef9def377387eb7ed1 693 Pfam PF07715 TonB-dependent Receptor Plug Domain 62 167 3.4E-14 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14260 a045e299f74bfaef9def377387eb7ed1 693 Gene3D G3DSA:2.40.170.20 176 693 5.9E-50 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14260 a045e299f74bfaef9def377387eb7ed1 693 SUPERFAMILY SSF56935 33 693 1.25E-78 T 26-04-2016 RGE_RS01785 975f630133a25ffb3cfc70aaf1dceee2 250 PANTHER PTHR24220:SF86 20 243 2.0E-94 T 26-04-2016 RGE_RS01785 975f630133a25ffb3cfc70aaf1dceee2 250 Gene3D G3DSA:3.40.50.300 19 243 1.3E-66 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01785 975f630133a25ffb3cfc70aaf1dceee2 250 SMART SM00382 47 235 2.4E-14 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS01785 975f630133a25ffb3cfc70aaf1dceee2 250 SUPERFAMILY SSF52540 20 245 8.67E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01785 975f630133a25ffb3cfc70aaf1dceee2 250 PANTHER PTHR24220 20 243 2.0E-94 T 26-04-2016 RGE_RS01785 975f630133a25ffb3cfc70aaf1dceee2 250 Pfam PF00005 ABC transporter 40 187 3.5E-27 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS01785 975f630133a25ffb3cfc70aaf1dceee2 250 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS20285 0572e3c711068c91a2fd559b2c88c92a 366 Pfam PF11306 Protein of unknown function (DUF3108) 126 343 1.3E-19 T 26-04-2016 IPR021457 Protein of unknown function DUF3108 RGE_RS03890 5d98097ac6fcacae54cd35502762aed5 405 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 166 194 - T 26-04-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 RGE_RS03890 5d98097ac6fcacae54cd35502762aed5 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 369 383 2.7E-27 T 26-04-2016 IPR003004 GspF/PilC family RGE_RS03890 5d98097ac6fcacae54cd35502762aed5 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 2.7E-27 T 26-04-2016 IPR003004 GspF/PilC family RGE_RS03890 5d98097ac6fcacae54cd35502762aed5 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 2.7E-27 T 26-04-2016 IPR003004 GspF/PilC family RGE_RS03890 5d98097ac6fcacae54cd35502762aed5 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 385 404 2.7E-27 T 26-04-2016 IPR003004 GspF/PilC family RGE_RS03890 5d98097ac6fcacae54cd35502762aed5 405 Pfam PF00482 Type II secretion system (T2SS), protein F 71 194 3.2E-30 T 26-04-2016 IPR018076 Type II secretion system F domain RGE_RS03890 5d98097ac6fcacae54cd35502762aed5 405 Pfam PF00482 Type II secretion system (T2SS), protein F 274 396 1.6E-24 T 26-04-2016 IPR018076 Type II secretion system F domain RGE_RS03890 5d98097ac6fcacae54cd35502762aed5 405 PANTHER PTHR30012:SF5 2 405 2.1E-135 T 26-04-2016 RGE_RS03890 5d98097ac6fcacae54cd35502762aed5 405 PANTHER PTHR30012 2 405 2.1E-135 T 26-04-2016 RGE_RS03890 5d98097ac6fcacae54cd35502762aed5 405 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 404 6.2E-138 T 26-04-2016 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 RGE_RS07040 148f2ae5478b8dfad67573fad541eb29 271 PANTHER PTHR31801 6 249 2.7E-102 T 26-04-2016 RGE_RS07040 148f2ae5478b8dfad67573fad541eb29 271 PANTHER PTHR31801:SF3 6 249 2.7E-102 T 26-04-2016 RGE_RS07040 148f2ae5478b8dfad67573fad541eb29 271 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 8 227 5.0E-32 T 26-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 RGE_RS07040 148f2ae5478b8dfad67573fad541eb29 271 SUPERFAMILY SSF51219 6 246 2.54E-80 T 26-04-2016 IPR016031 Tryptophan RNA-binding attenuator protein-like domain RGE_RS07040 148f2ae5478b8dfad67573fad541eb29 271 Gene3D G3DSA:3.60.160.10 2 249 3.7E-97 T 26-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 RGE_RS07040 148f2ae5478b8dfad67573fad541eb29 271 Pfam PF01987 Mitochondrial biogenesis AIM24 8 226 7.9E-66 T 26-04-2016 IPR002838 Mitochondrial biogenesis protein AIM24 RGE_RS02295 ee6f57aac6843de55d86dcc4cf700cb8 354 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 328 1.1E-96 T 26-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RGE_RS02295 ee6f57aac6843de55d86dcc4cf700cb8 354 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 328 9.0E-94 T 26-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RGE_RS02295 ee6f57aac6843de55d86dcc4cf700cb8 354 PANTHER PTHR30304 1 349 6.7E-119 T 26-04-2016 RGE_RS02295 ee6f57aac6843de55d86dcc4cf700cb8 354 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 26-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RGE_RS02295 ee6f57aac6843de55d86dcc4cf700cb8 354 Gene3D G3DSA:3.20.20.70 1 335 3.3E-109 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS02295 ee6f57aac6843de55d86dcc4cf700cb8 354 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 5.9E-180 T 26-04-2016 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|UniPathway: UPA00109 RGE_RS02295 ee6f57aac6843de55d86dcc4cf700cb8 354 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 85 - T 26-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RGE_RS02295 ee6f57aac6843de55d86dcc4cf700cb8 354 SUPERFAMILY SSF51569 3 328 1.47E-106 T 26-04-2016 RGE_RS02295 ee6f57aac6843de55d86dcc4cf700cb8 354 PIRSF PIRSF001359 1 329 8.7E-84 T 26-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RGE_RS11760 3802812604b4edd9907b03ba668dc2fc 178 PIRSF PIRSF004749 1 168 9.2E-51 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS11760 3802812604b4edd9907b03ba668dc2fc 178 Hamap MF_00163 Peptide deformylase [def]. 2 171 26.335 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS11760 3802812604b4edd9907b03ba668dc2fc 178 Pfam PF01327 Polypeptide deformylase 4 160 5.8E-50 T 26-04-2016 IPR023635 Peptide deformylase RGE_RS11760 3802812604b4edd9907b03ba668dc2fc 178 PRINTS PR01576 Peptide deformylase signature 98 109 4.7E-30 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS11760 3802812604b4edd9907b03ba668dc2fc 178 PRINTS PR01576 Peptide deformylase signature 110 128 4.7E-30 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS11760 3802812604b4edd9907b03ba668dc2fc 178 PRINTS PR01576 Peptide deformylase signature 129 158 4.7E-30 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS11760 3802812604b4edd9907b03ba668dc2fc 178 PRINTS PR01576 Peptide deformylase signature 34 63 4.7E-30 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS11760 3802812604b4edd9907b03ba668dc2fc 178 PANTHER PTHR10458:SF4 1 164 4.5E-79 T 26-04-2016 RGE_RS11760 3802812604b4edd9907b03ba668dc2fc 178 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 161 5.6E-38 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS11760 3802812604b4edd9907b03ba668dc2fc 178 SUPERFAMILY SSF56420 1 165 1.06E-58 T 26-04-2016 IPR023635 Peptide deformylase RGE_RS11760 3802812604b4edd9907b03ba668dc2fc 178 PANTHER PTHR10458 1 164 4.5E-79 T 26-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RGE_RS11760 3802812604b4edd9907b03ba668dc2fc 178 Gene3D G3DSA:3.90.45.10 1 161 2.4E-56 T 26-04-2016 IPR023635 Peptide deformylase RGE_RS12005 9be738139f099b9bdeb8f89094b2036e 464 Gene3D G3DSA:3.40.190.10 278 302 7.5E-7 T 26-04-2016 RGE_RS12005 9be738139f099b9bdeb8f89094b2036e 464 Gene3D G3DSA:3.40.190.10 56 137 7.5E-7 T 26-04-2016 RGE_RS12005 9be738139f099b9bdeb8f89094b2036e 464 Gene3D G3DSA:3.40.190.10 155 277 3.9E-13 T 26-04-2016 RGE_RS12005 9be738139f099b9bdeb8f89094b2036e 464 SUPERFAMILY SSF53850 55 336 2.28E-31 T 26-04-2016 RGE_RS12005 9be738139f099b9bdeb8f89094b2036e 464 Pfam PF16868 NMT1-like family 79 302 1.5E-13 T 26-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RGE_RS12005 9be738139f099b9bdeb8f89094b2036e 464 PANTHER PTHR30024 18 268 9.0E-41 T 26-04-2016 RGE_RS12005 9be738139f099b9bdeb8f89094b2036e 464 PANTHER PTHR30024 289 441 9.0E-41 T 26-04-2016 RGE_RS12005 9be738139f099b9bdeb8f89094b2036e 464 PANTHER PTHR30024:SF13 289 441 9.0E-41 T 26-04-2016 RGE_RS12005 9be738139f099b9bdeb8f89094b2036e 464 PANTHER PTHR30024:SF13 18 268 9.0E-41 T 26-04-2016 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 SUPERFAMILY SSF52021 7 140 2.35E-54 T 26-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 8 381 5.3E-141 T 26-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 SMART SM01097 6 136 2.2E-86 T 26-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 200 214 1.9E-40 T 26-04-2016 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 239 253 1.9E-40 T 26-04-2016 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 287 304 1.9E-40 T 26-04-2016 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 312 323 1.9E-40 T 26-04-2016 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 270 286 1.9E-40 T 26-04-2016 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 Pfam PF00117 Glutamine amidotransferase class-I 203 378 7.0E-45 T 26-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 PANTHER PTHR11405 6 382 1.6E-226 T 26-04-2016 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 6 384 48.436 T 26-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 PRINTS PR00096 Glutamine amidotransferase superfamily signature 270 281 8.5E-10 T 26-04-2016 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 PRINTS PR00096 Glutamine amidotransferase superfamily signature 242 251 8.5E-10 T 26-04-2016 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 PRINTS PR00096 Glutamine amidotransferase superfamily signature 355 368 8.5E-10 T 26-04-2016 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 Gene3D G3DSA:3.40.50.880 162 382 4.9E-79 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 SUPERFAMILY SSF52317 165 382 1.03E-59 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 Gene3D G3DSA:3.50.30.20 8 139 1.2E-56 T 26-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS16210 ea82f1cfde4c07815b40358edaae38a9 384 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 8 135 5.0E-49 T 26-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RGE_RS02915 39efd742cc06dda278cda2cf60f9bcba 312 Gene3D G3DSA:1.10.10.60 206 262 1.4E-6 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS02915 39efd742cc06dda278cda2cf60f9bcba 312 PANTHER PTHR11019 155 303 2.7E-36 T 26-04-2016 RGE_RS02915 39efd742cc06dda278cda2cf60f9bcba 312 SMART SM00342 224 307 3.7E-21 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS02915 39efd742cc06dda278cda2cf60f9bcba 312 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 209 253 - T 26-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RGE_RS02915 39efd742cc06dda278cda2cf60f9bcba 312 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 261 303 - T 26-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RGE_RS02915 39efd742cc06dda278cda2cf60f9bcba 312 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 276 291 3.7E-5 T 26-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RGE_RS02915 39efd742cc06dda278cda2cf60f9bcba 312 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 291 307 3.7E-5 T 26-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RGE_RS02915 39efd742cc06dda278cda2cf60f9bcba 312 PANTHER PTHR11019:SF61 155 303 2.7E-36 T 26-04-2016 RGE_RS02915 39efd742cc06dda278cda2cf60f9bcba 312 Pfam PF12833 Helix-turn-helix domain 230 304 3.4E-19 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS02915 39efd742cc06dda278cda2cf60f9bcba 312 Gene3D G3DSA:1.10.10.60 263 304 2.7E-12 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS02915 39efd742cc06dda278cda2cf60f9bcba 312 SUPERFAMILY SSF46689 261 306 1.25E-9 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS02915 39efd742cc06dda278cda2cf60f9bcba 312 SUPERFAMILY SSF46689 208 255 8.06E-5 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS02390 934d6d9317e4ea19ac2dce7ca3e1172c 130 SUPERFAMILY SSF55620 12 126 2.11E-27 T 26-04-2016 RGE_RS02390 934d6d9317e4ea19ac2dce7ca3e1172c 130 Pfam PF02152 Dihydroneopterin aldolase 16 125 1.3E-23 T 26-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RGE_RS02390 934d6d9317e4ea19ac2dce7ca3e1172c 130 Gene3D G3DSA:3.30.1130.10 15 125 1.1E-29 T 26-04-2016 RGE_RS02390 934d6d9317e4ea19ac2dce7ca3e1172c 130 SMART SM00905 16 127 8.4E-28 T 26-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RGE_RS02390 934d6d9317e4ea19ac2dce7ca3e1172c 130 TIGRFAM TIGR00526 folB_dom: FolB domain 16 120 3.4E-13 T 26-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RGE_RS03580 7a0a1a640129ba433819b76ceec15c21 208 Pfam PF13671 AAA domain 28 181 2.8E-6 T 26-04-2016 RGE_RS03580 7a0a1a640129ba433819b76ceec15c21 208 PANTHER PTHR10285 23 202 1.1E-56 T 26-04-2016 RGE_RS03580 7a0a1a640129ba433819b76ceec15c21 208 Gene3D G3DSA:3.40.50.300 13 204 1.3E-56 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03580 7a0a1a640129ba433819b76ceec15c21 208 SUPERFAMILY SSF52540 22 206 2.55E-37 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03580 7a0a1a640129ba433819b76ceec15c21 208 SMART SM00382 22 203 0.0022 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS03580 7a0a1a640129ba433819b76ceec15c21 208 PANTHER PTHR10285:SF81 23 202 1.1E-56 T 26-04-2016 RGE_RS13665 da3118e01d850ded2d57a73d2383c917 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 6.5E-65 T 26-04-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS13665 da3118e01d850ded2d57a73d2383c917 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 327 8.8E-134 T 26-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS13665 da3118e01d850ded2d57a73d2383c917 338 SUPERFAMILY SSF51735 1 182 1.52E-73 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS13665 da3118e01d850ded2d57a73d2383c917 338 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 1 328 45.458 T 26-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS13665 da3118e01d850ded2d57a73d2383c917 338 Gene3D G3DSA:1.10.1040.10 29 325 1.3E-113 T 26-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RGE_RS13665 da3118e01d850ded2d57a73d2383c917 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 2.1E-73 T 26-04-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS13665 da3118e01d850ded2d57a73d2383c917 338 SUPERFAMILY SSF48179 183 332 4.08E-71 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS13665 da3118e01d850ded2d57a73d2383c917 338 PANTHER PTHR21371 1 337 1.5E-184 T 26-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS00385 915f04efa124815cf35d97a5dce9c075 347 PANTHER PTHR30486:SF6 1 345 3.7E-190 T 26-04-2016 RGE_RS00385 915f04efa124815cf35d97a5dce9c075 347 PANTHER PTHR30486 1 345 3.7E-190 T 26-04-2016 RGE_RS00385 915f04efa124815cf35d97a5dce9c075 347 SMART SM00382 122 256 0.0012 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS00385 915f04efa124815cf35d97a5dce9c075 347 Gene3D G3DSA:3.40.50.300 100 342 2.1E-72 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00385 915f04efa124815cf35d97a5dce9c075 347 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS00385 915f04efa124815cf35d97a5dce9c075 347 SUPERFAMILY SSF52540 5 336 4.58E-77 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00385 915f04efa124815cf35d97a5dce9c075 347 Pfam PF00437 Type II/IV secretion system protein 12 264 3.5E-45 T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS00385 915f04efa124815cf35d97a5dce9c075 347 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 343 1.8E-154 T 26-04-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 RGE_RS05330 e8c8b296509a57a8b9c2df932389368e 403 Gene3D G3DSA:2.40.170.20 174 367 1.4E-8 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS05330 e8c8b296509a57a8b9c2df932389368e 403 SUPERFAMILY SSF56935 74 118 6.54E-8 T 26-04-2016 RGE_RS05330 e8c8b296509a57a8b9c2df932389368e 403 SUPERFAMILY SSF56935 181 356 6.54E-8 T 26-04-2016 RGE_RS21720 88bf349fdfc914519011b96081ed8124 277 Pfam PF07589 PEP-CTERM motif 251 275 5.6E-6 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS21720 88bf349fdfc914519011b96081ed8124 277 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 252 275 1.6E-5 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS15845 0c6aa36e9a3cc0b8683ae4d2650b38f3 159 Gene3D G3DSA:3.90.1170.40 2 139 1.4E-53 T 26-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15845 0c6aa36e9a3cc0b8683ae4d2650b38f3 159 PANTHER PTHR23404:SF2 3 149 4.8E-37 T 26-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15845 0c6aa36e9a3cc0b8683ae4d2650b38f3 159 Pfam PF02391 MoaE protein 6 120 1.5E-34 T 26-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15845 0c6aa36e9a3cc0b8683ae4d2650b38f3 159 SUPERFAMILY SSF54690 4 149 3.92E-50 T 26-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 RGE_RS15845 0c6aa36e9a3cc0b8683ae4d2650b38f3 159 PANTHER PTHR23404 3 149 4.8E-37 T 26-04-2016 RGE_RS11445 9e5b9dd3cba8b4e42a4f35b6cbc97723 299 SUPERFAMILY SSF103481 192 289 1.96E-6 T 26-04-2016 RGE_RS11445 9e5b9dd3cba8b4e42a4f35b6cbc97723 299 Pfam PF00892 EamA-like transporter family 20 145 1.6E-17 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS11445 9e5b9dd3cba8b4e42a4f35b6cbc97723 299 Pfam PF00892 EamA-like transporter family 157 287 1.7E-9 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS11445 9e5b9dd3cba8b4e42a4f35b6cbc97723 299 SUPERFAMILY SSF103481 50 149 3.66E-13 T 26-04-2016 RGE_RS11445 9e5b9dd3cba8b4e42a4f35b6cbc97723 299 PANTHER PTHR12715 19 297 3.9E-38 T 26-04-2016 RGE_RS08370 91429a1db646c8448668dcacece75523 371 Gene3D G3DSA:3.40.50.720 2 78 3.7E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS08370 91429a1db646c8448668dcacece75523 371 Gene3D G3DSA:3.40.50.720 323 364 3.7E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS08370 91429a1db646c8448668dcacece75523 371 Gene3D G3DSA:3.40.50.720 183 255 3.7E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS08370 91429a1db646c8448668dcacece75523 371 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 2 366 7.6E-108 T 26-04-2016 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 RGE_RS08370 91429a1db646c8448668dcacece75523 371 PANTHER PTHR21197 1 368 1.4E-87 T 26-04-2016 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 RGE_RS08370 91429a1db646c8448668dcacece75523 371 SUPERFAMILY SSF51971 1 265 6.36E-49 T 26-04-2016 RGE_RS08370 91429a1db646c8448668dcacece75523 371 SUPERFAMILY SSF51971 333 368 6.36E-49 T 26-04-2016 RGE_RS08370 91429a1db646c8448668dcacece75523 371 Pfam PF03275 UDP-galactopyranose mutase 149 348 2.7E-73 T 26-04-2016 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 RGE_RS08370 91429a1db646c8448668dcacece75523 371 SUPERFAMILY SSF54373 246 315 9.42E-18 T 26-04-2016 RGE_RS08370 91429a1db646c8448668dcacece75523 371 Pfam PF13450 NAD(P)-binding Rossmann-like domain 5 71 1.1E-15 T 26-04-2016 RGE_RS11975 ed28882294be4de48f061796ba95f184 119 Gene3D G3DSA:4.10.520.10 19 110 8.2E-32 T 26-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RGE_RS11975 ed28882294be4de48f061796ba95f184 119 PANTHER PTHR33175:SF2 20 117 9.7E-43 T 26-04-2016 RGE_RS11975 ed28882294be4de48f061796ba95f184 119 PRINTS PR01727 Prokaryotic integration host factor signature 59 74 5.4E-12 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS11975 ed28882294be4de48f061796ba95f184 119 PRINTS PR01727 Prokaryotic integration host factor signature 93 107 5.4E-12 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS11975 ed28882294be4de48f061796ba95f184 119 PRINTS PR01727 Prokaryotic integration host factor signature 77 90 5.4E-12 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS11975 ed28882294be4de48f061796ba95f184 119 PANTHER PTHR33175 20 117 9.7E-43 T 26-04-2016 RGE_RS11975 ed28882294be4de48f061796ba95f184 119 Pfam PF00216 Bacterial DNA-binding protein 20 108 3.2E-28 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS11975 ed28882294be4de48f061796ba95f184 119 SMART SM00411 20 109 4.0E-37 T 26-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RGE_RS11975 ed28882294be4de48f061796ba95f184 119 SUPERFAMILY SSF47729 20 110 2.65E-29 T 26-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RGE_RS11975 ed28882294be4de48f061796ba95f184 119 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 18 114 26.9 T 26-04-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 RGE_RS11975 ed28882294be4de48f061796ba95f184 119 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 65 84 - T 26-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RGE_RS14650 c6139b383703b02de8a0a565caddad6b 625 Pfam PF02333 Phytase 303 622 1.8E-69 T 26-04-2016 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 RGE_RS14650 c6139b383703b02de8a0a565caddad6b 625 Pfam PF02333 Phytase 136 207 7.7E-7 T 26-04-2016 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 RGE_RS14650 c6139b383703b02de8a0a565caddad6b 625 Gene3D G3DSA:2.120.10.20 298 624 2.2E-106 T 26-04-2016 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 RGE_RS14650 c6139b383703b02de8a0a565caddad6b 625 Gene3D G3DSA:2.120.10.20 45 265 2.2E-35 T 26-04-2016 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 RGE_RS14650 c6139b383703b02de8a0a565caddad6b 625 SUPERFAMILY SSF50956 299 623 1.16E-66 T 26-04-2016 RGE_RS14650 c6139b383703b02de8a0a565caddad6b 625 SUPERFAMILY SSF50956 47 261 8.63E-21 T 26-04-2016 RGE_RS10445 6db3e1c40dc8ed7fde165d88ba516c93 202 SUPERFAMILY SSF50022 34 194 3.56E-42 T 26-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RGE_RS10445 6db3e1c40dc8ed7fde165d88ba516c93 202 PANTHER PTHR10134 21 199 1.2E-76 T 26-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 RGE_RS10445 6db3e1c40dc8ed7fde165d88ba516c93 202 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 13 195 8.5E-65 T 26-04-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RGE_RS10445 6db3e1c40dc8ed7fde165d88ba516c93 202 PANTHER PTHR10134:SF8 21 199 1.2E-76 T 26-04-2016 RGE_RS10445 6db3e1c40dc8ed7fde165d88ba516c93 202 Pfam PF00355 Rieske [2Fe-2S] domain 60 182 2.0E-12 T 26-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RGE_RS10445 6db3e1c40dc8ed7fde165d88ba516c93 202 PRINTS PR00162 Rieske 2Fe-2S subunit signature 122 133 1.5E-7 T 26-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RGE_RS10445 6db3e1c40dc8ed7fde165d88ba516c93 202 PRINTS PR00162 Rieske 2Fe-2S subunit signature 154 166 1.5E-7 T 26-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RGE_RS10445 6db3e1c40dc8ed7fde165d88ba516c93 202 PRINTS PR00162 Rieske 2Fe-2S subunit signature 167 179 1.5E-7 T 26-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RGE_RS10445 6db3e1c40dc8ed7fde165d88ba516c93 202 Gene3D G3DSA:2.102.10.10 12 195 5.4E-41 T 26-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RGE_RS07590 b3af319cda0c9c3e6423e0090614b64e 157 PANTHER PTHR13947 51 157 4.6E-15 T 26-04-2016 RGE_RS07590 b3af319cda0c9c3e6423e0090614b64e 157 Pfam PF00583 Acetyltransferase (GNAT) family 53 135 2.0E-12 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS07590 b3af319cda0c9c3e6423e0090614b64e 157 Gene3D G3DSA:3.40.630.30 2 145 5.3E-25 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS07590 b3af319cda0c9c3e6423e0090614b64e 157 SUPERFAMILY SSF55729 4 148 3.14E-24 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS08970 2fd8eaf150a72a2376216eba0f7de7e8 295 Gene3D G3DSA:3.60.15.10 11 256 4.5E-51 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS08970 2fd8eaf150a72a2376216eba0f7de7e8 295 Pfam PF00753 Metallo-beta-lactamase superfamily 29 213 6.7E-23 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS08970 2fd8eaf150a72a2376216eba0f7de7e8 295 SMART SM00849 19 213 1.2E-28 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS08970 2fd8eaf150a72a2376216eba0f7de7e8 295 SUPERFAMILY SSF56281 15 258 4.46E-52 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS08970 2fd8eaf150a72a2376216eba0f7de7e8 295 PANTHER PTHR11935 10 290 1.2E-114 T 26-04-2016 RGE_RS08970 2fd8eaf150a72a2376216eba0f7de7e8 295 PANTHER PTHR11935:SF110 10 290 1.2E-114 T 26-04-2016 RGE_RS10125 40e3d1b685cc3f59ed5df96e91e809d5 354 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 12 339 2.0E-115 T 26-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RGE_RS10125 40e3d1b685cc3f59ed5df96e91e809d5 354 PANTHER PTHR10361 12 347 8.9E-113 T 26-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RGE_RS10125 40e3d1b685cc3f59ed5df96e91e809d5 354 PIRSF PIRSF005508 1 351 1.7E-115 T 26-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RGE_RS10125 40e3d1b685cc3f59ed5df96e91e809d5 354 Pfam PF01758 Sodium Bile acid symporter family 58 252 2.9E-36 T 26-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RGE_RS10125 40e3d1b685cc3f59ed5df96e91e809d5 354 PANTHER PTHR10361:SF31 12 347 8.9E-113 T 26-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RGE_RS04790 6d283d03dbdbb1a3357c921004324425 125 PIRSF PIRSF007028 1 121 1.6E-45 T 26-04-2016 IPR009874 Protein of unknown function DUF1428 RGE_RS04790 6d283d03dbdbb1a3357c921004324425 125 Pfam PF07237 Protein of unknown function (DUF1428) 2 107 8.8E-41 T 26-04-2016 IPR009874 Protein of unknown function DUF1428 RGE_RS04790 6d283d03dbdbb1a3357c921004324425 125 SUPERFAMILY SSF54909 1 119 3.43E-45 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS04790 6d283d03dbdbb1a3357c921004324425 125 Gene3D G3DSA:3.30.70.900 1 119 2.6E-48 T 26-04-2016 RGE_RS01435 197c2526d2dc891cfa9468eabc387018 164 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 92 148 4.6E-18 T 26-04-2016 IPR018637 Domain of unknown function DUF2059 RGE_RS02610 26e8396666860486cfbf2f5b35778291 751 ProSitePatterns PS00850 Glycine radical domain signature. 721 729 - T 26-04-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site RGE_RS02610 26e8396666860486cfbf2f5b35778291 751 Pfam PF01228 Glycine radical 626 732 1.6E-43 T 26-04-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 RGE_RS02610 26e8396666860486cfbf2f5b35778291 751 PANTHER PTHR30191 4 751 0.0 T 26-04-2016 RGE_RS02610 26e8396666860486cfbf2f5b35778291 751 Pfam PF02901 Pyruvate formate lyase-like 28 610 7.1E-197 T 26-04-2016 IPR004184 Pyruvate formate lyase domain GO:0003824 RGE_RS02610 26e8396666860486cfbf2f5b35778291 751 Gene3D G3DSA:3.20.70.20 10 748 2.1E-298 T 26-04-2016 RGE_RS02610 26e8396666860486cfbf2f5b35778291 751 PIRSF PIRSF000379 10 751 0.0 T 26-04-2016 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493|UniPathway: UPA00920 RGE_RS02610 26e8396666860486cfbf2f5b35778291 751 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 13 749 0.0 T 26-04-2016 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493|UniPathway: UPA00920 RGE_RS02610 26e8396666860486cfbf2f5b35778291 751 PANTHER PTHR30191:SF0 4 751 0.0 T 26-04-2016 RGE_RS02610 26e8396666860486cfbf2f5b35778291 751 SUPERFAMILY SSF51998 10 749 3.66E-274 T 26-04-2016 RGE_RS19545 f6646c9c0b8a83ee34f46c02055e89b9 338 SUPERFAMILY SSF56935 23 338 7.94E-64 T 26-04-2016 RGE_RS19545 f6646c9c0b8a83ee34f46c02055e89b9 338 Gene3D G3DSA:2.40.160.10 23 338 1.5E-67 T 26-04-2016 IPR023614 Porin domain RGE_RS19545 f6646c9c0b8a83ee34f46c02055e89b9 338 Pfam PF13609 Gram-negative porin 11 322 1.5E-49 T 26-04-2016 RGE_RS01850 f3ef61ec1e50465e27c4bd61635ed79d 251 Gene3D G3DSA:3.60.10.10 4 249 9.4E-16 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS01850 f3ef61ec1e50465e27c4bd61635ed79d 251 SUPERFAMILY SSF56219 4 249 2.22E-49 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS01850 f3ef61ec1e50465e27c4bd61635ed79d 251 PANTHER PTHR15822:SF7 3 251 2.4E-89 T 26-04-2016 RGE_RS01850 f3ef61ec1e50465e27c4bd61635ed79d 251 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 15 242 1.1E-21 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS01850 f3ef61ec1e50465e27c4bd61635ed79d 251 PANTHER PTHR15822 3 251 2.4E-89 T 26-04-2016 RGE_RS18275 8e55138ea4b2e73bef489ab314fc7e67 410 Gene3D G3DSA:3.20.20.450 147 394 4.1E-74 T 26-04-2016 IPR001633 EAL domain RGE_RS18275 8e55138ea4b2e73bef489ab314fc7e67 410 PANTHER PTHR33121:SF13 148 407 1.9E-61 T 26-04-2016 RGE_RS18275 8e55138ea4b2e73bef489ab314fc7e67 410 Gene3D G3DSA:3.40.50.2300 10 132 1.8E-24 T 26-04-2016 RGE_RS18275 8e55138ea4b2e73bef489ab314fc7e67 410 Pfam PF00072 Response regulator receiver domain 11 125 2.5E-19 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS18275 8e55138ea4b2e73bef489ab314fc7e67 410 Pfam PF00563 EAL domain 147 381 4.4E-58 T 26-04-2016 IPR001633 EAL domain RGE_RS18275 8e55138ea4b2e73bef489ab314fc7e67 410 PANTHER PTHR33121 148 407 1.9E-61 T 26-04-2016 RGE_RS18275 8e55138ea4b2e73bef489ab314fc7e67 410 SMART SM00448 9 127 2.4E-16 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS18275 8e55138ea4b2e73bef489ab314fc7e67 410 SMART SM00052 141 386 2.1E-71 T 26-04-2016 IPR001633 EAL domain RGE_RS18275 8e55138ea4b2e73bef489ab314fc7e67 410 SUPERFAMILY SSF141868 147 394 3.79E-72 T 26-04-2016 IPR001633 EAL domain RGE_RS18275 8e55138ea4b2e73bef489ab314fc7e67 410 SUPERFAMILY SSF52172 10 138 3.7E-26 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11275 59d63cad2c717693cdf28cffc57bc217 98 PIRSF PIRSF002736 1 97 2.6E-38 T 26-04-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 RGE_RS11275 59d63cad2c717693cdf28cffc57bc217 98 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 5 85 1.0E-30 T 26-04-2016 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein RGE_RS11275 59d63cad2c717693cdf28cffc57bc217 98 Hamap MF_00805 Citrate lyase acyl carrier protein [citD]. 1 97 26.723 T 26-04-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 RGE_RS11275 59d63cad2c717693cdf28cffc57bc217 98 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 10 82 4.0E-23 T 26-04-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 RGE_RS11275 59d63cad2c717693cdf28cffc57bc217 98 TIGRFAM TIGR01608 citD: citrate lyase acyl carrier protein 1 94 3.2E-34 T 26-04-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 RGE_RS11990 2953cf3e227ff0c4010369d2a8bedda4 238 SUPERFAMILY SSF46894 167 238 1.84E-18 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS11990 2953cf3e227ff0c4010369d2a8bedda4 238 SUPERFAMILY SSF75516 9 164 1.14E-20 T 26-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RGE_RS11990 2953cf3e227ff0c4010369d2a8bedda4 238 Gene3D G3DSA:3.30.450.80 9 180 8.5E-19 T 26-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RGE_RS11990 2953cf3e227ff0c4010369d2a8bedda4 238 SMART SM00421 175 232 5.0E-16 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11990 2953cf3e227ff0c4010369d2a8bedda4 238 Pfam PF00196 Bacterial regulatory proteins, luxR family 178 231 3.6E-17 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11990 2953cf3e227ff0c4010369d2a8bedda4 238 Gene3D G3DSA:1.10.10.10 181 238 8.4E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11990 2953cf3e227ff0c4010369d2a8bedda4 238 ProSitePatterns PS00622 LuxR-type HTH domain signature. 192 219 - T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11990 2953cf3e227ff0c4010369d2a8bedda4 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 208 220 1.5E-8 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11990 2953cf3e227ff0c4010369d2a8bedda4 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 208 1.5E-8 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11990 2953cf3e227ff0c4010369d2a8bedda4 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 192 1.5E-8 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11990 2953cf3e227ff0c4010369d2a8bedda4 238 Pfam PF03472 Autoinducer binding domain 16 159 3.4E-18 T 26-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RGE_RS22225 f821c3fba183f2a6293124f1420e97ed 735 Gene3D G3DSA:2.40.170.20 172 735 2.1E-73 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS22225 f821c3fba183f2a6293124f1420e97ed 735 SUPERFAMILY SSF56935 33 735 6.18E-95 T 26-04-2016 RGE_RS22225 f821c3fba183f2a6293124f1420e97ed 735 PANTHER PTHR32552:SF33 466 602 1.0E-56 T 26-04-2016 RGE_RS22225 f821c3fba183f2a6293124f1420e97ed 735 PANTHER PTHR32552:SF33 622 735 1.0E-56 T 26-04-2016 RGE_RS22225 f821c3fba183f2a6293124f1420e97ed 735 PANTHER PTHR32552:SF33 7 448 1.0E-56 T 26-04-2016 RGE_RS22225 f821c3fba183f2a6293124f1420e97ed 735 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 718 735 - T 26-04-2016 IPR010917 TonB-dependent receptor, conserved site RGE_RS22225 f821c3fba183f2a6293124f1420e97ed 735 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 162 9.7E-14 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS22225 f821c3fba183f2a6293124f1420e97ed 735 Gene3D G3DSA:2.170.130.10 31 171 9.4E-25 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS22225 f821c3fba183f2a6293124f1420e97ed 735 Pfam PF00593 TonB dependent receptor 470 732 6.4E-19 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS22225 f821c3fba183f2a6293124f1420e97ed 735 PANTHER PTHR32552 466 602 1.0E-56 T 26-04-2016 RGE_RS22225 f821c3fba183f2a6293124f1420e97ed 735 PANTHER PTHR32552 622 735 1.0E-56 T 26-04-2016 RGE_RS22225 f821c3fba183f2a6293124f1420e97ed 735 PANTHER PTHR32552 7 448 1.0E-56 T 26-04-2016 RGE_RS05290 5434c35a38f67b6cce2244bb9dd5c5f5 349 Pfam PF13692 Glycosyl transferases group 1 160 272 1.7E-7 T 26-04-2016 RGE_RS05290 5434c35a38f67b6cce2244bb9dd5c5f5 349 Gene3D G3DSA:3.40.50.2000 159 242 2.3E-4 T 26-04-2016 RGE_RS05290 5434c35a38f67b6cce2244bb9dd5c5f5 349 SUPERFAMILY SSF53756 35 325 4.29E-23 T 26-04-2016 RGE_RS03820 0e1712b9535ba0e2be529f676aae210a 282 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 60 71 9.2E-9 T 26-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RGE_RS03820 0e1712b9535ba0e2be529f676aae210a 282 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 33 41 9.2E-9 T 26-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RGE_RS03820 0e1712b9535ba0e2be529f676aae210a 282 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 102 116 9.2E-9 T 26-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RGE_RS03820 0e1712b9535ba0e2be529f676aae210a 282 Pfam PF00561 alpha/beta hydrolase fold 31 262 5.6E-28 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS03820 0e1712b9535ba0e2be529f676aae210a 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 7.4E-8 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS03820 0e1712b9535ba0e2be529f676aae210a 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 57 72 7.4E-8 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS03820 0e1712b9535ba0e2be529f676aae210a 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 224 238 7.4E-8 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS03820 0e1712b9535ba0e2be529f676aae210a 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 116 129 7.4E-8 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS03820 0e1712b9535ba0e2be529f676aae210a 282 SUPERFAMILY SSF53474 7 280 1.09E-55 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS03820 0e1712b9535ba0e2be529f676aae210a 282 Gene3D G3DSA:3.40.50.1820 3 280 6.1E-59 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS03820 0e1712b9535ba0e2be529f676aae210a 282 PANTHER PTHR10992 2 282 4.0E-46 T 26-04-2016 RGE_RS05960 392f7406faaadbb25d5868b9146a4bf9 311 Gene3D G3DSA:3.30.470.10 19 130 3.5E-34 T 26-04-2016 RGE_RS05960 392f7406faaadbb25d5868b9146a4bf9 311 PANTHER PTHR11825:SF7 12 311 1.5E-115 T 26-04-2016 RGE_RS05960 392f7406faaadbb25d5868b9146a4bf9 311 Pfam PF01063 Amino-transferase class IV 45 273 2.9E-39 T 26-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS05960 392f7406faaadbb25d5868b9146a4bf9 311 PANTHER PTHR11825 12 311 1.5E-115 T 26-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS05960 392f7406faaadbb25d5868b9146a4bf9 311 Gene3D G3DSA:3.20.10.10 141 299 6.0E-44 T 26-04-2016 RGE_RS05960 392f7406faaadbb25d5868b9146a4bf9 311 SUPERFAMILY SSF56752 18 301 2.88E-74 T 26-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS17300 5e9719cb43aee7713d2601cf20267670 404 PANTHER PTHR13932:SF7 24 403 2.3E-151 T 26-04-2016 RGE_RS17300 5e9719cb43aee7713d2601cf20267670 404 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 26 374 7.0E-98 T 26-04-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- RGE_RS17300 5e9719cb43aee7713d2601cf20267670 404 PANTHER PTHR13932 24 403 2.3E-151 T 26-04-2016 RGE_RS17300 5e9719cb43aee7713d2601cf20267670 404 Pfam PF04055 Radical SAM superfamily 31 195 5.4E-18 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS17300 5e9719cb43aee7713d2601cf20267670 404 SUPERFAMILY SSF102114 21 403 1.06E-104 T 26-04-2016 RGE_RS17300 5e9719cb43aee7713d2601cf20267670 404 SMART SM00729 25 249 2.9E-53 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS17300 5e9719cb43aee7713d2601cf20267670 404 Pfam PF06969 HemN C-terminal domain 332 391 8.6E-12 T 26-04-2016 IPR010723 HemN, C-terminal RGE_RS17300 5e9719cb43aee7713d2601cf20267670 404 Gene3D G3DSA:3.80.30.20 26 260 9.3E-29 T 26-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RGE_RS09060 7a55357245a9721165095244a63c64d6 571 PANTHER PTHR24095 13 569 1.3E-159 T 26-04-2016 RGE_RS09060 7a55357245a9721165095244a63c64d6 571 Gene3D G3DSA:2.30.38.10 369 454 3.4E-19 T 26-04-2016 RGE_RS09060 7a55357245a9721165095244a63c64d6 571 Gene3D G3DSA:3.40.50.980 200 346 1.2E-28 T 26-04-2016 RGE_RS09060 7a55357245a9721165095244a63c64d6 571 Gene3D G3DSA:3.40.50.980 42 199 1.1E-34 T 26-04-2016 RGE_RS09060 7a55357245a9721165095244a63c64d6 571 Pfam PF13193 AMP-binding enzyme C-terminal domain 473 551 8.7E-22 T 26-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RGE_RS09060 7a55357245a9721165095244a63c64d6 571 ProSitePatterns PS00455 Putative AMP-binding domain signature. 194 205 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS09060 7a55357245a9721165095244a63c64d6 571 SUPERFAMILY SSF56801 13 563 1.18E-143 T 26-04-2016 RGE_RS09060 7a55357245a9721165095244a63c64d6 571 Gene3D G3DSA:3.30.300.30 459 564 1.1E-31 T 26-04-2016 RGE_RS09060 7a55357245a9721165095244a63c64d6 571 Pfam PF00501 AMP-binding enzyme 45 463 1.4E-78 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 Pfam PF01321 Creatinase/Prolidase N-terminal domain 11 136 1.8E-13 T 26-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 Gene3D G3DSA:3.40.350.10 11 137 2.0E-14 T 26-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 Gene3D G3DSA:3.40.350.10 177 288 5.1E-6 T 26-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 Pfam PF16189 Creatinase/Prolidase N-terminal domain 154 310 6.0E-36 T 26-04-2016 RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 Pfam PF00557 Metallopeptidase family M24 314 530 9.6E-44 T 26-04-2016 IPR000994 Peptidase M24, structural domain RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 Gene3D G3DSA:3.90.230.10 305 571 3.6E-57 T 26-04-2016 IPR000994 Peptidase M24, structural domain RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 Pfam PF16188 C-terminal region of peptidase_M24 544 604 2.9E-25 T 26-04-2016 IPR032416 Peptidase M24, C-terminal domain RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 PANTHER PTHR10804 1 95 4.0E-153 T 26-04-2016 RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 PANTHER PTHR10804 112 186 4.0E-153 T 26-04-2016 RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 PANTHER PTHR10804 286 602 4.0E-153 T 26-04-2016 RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 SUPERFAMILY SSF55920 307 570 1.01E-52 T 26-04-2016 IPR000994 Peptidase M24, structural domain RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 PANTHER PTHR10804:SF87 1 95 4.0E-153 T 26-04-2016 RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 PANTHER PTHR10804:SF87 112 186 4.0E-153 T 26-04-2016 RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 PANTHER PTHR10804:SF87 286 602 4.0E-153 T 26-04-2016 RGE_RS06475 6a507549544dfdf665a145438f00f01c 604 SUPERFAMILY SSF53092 9 136 2.79E-9 T 26-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal RGE_RS11785 245394d6b5e0200739c4fe11a14a33c9 334 SUPERFAMILY SSF51735 7 159 3.54E-50 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11785 245394d6b5e0200739c4fe11a14a33c9 334 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 8 122 1.5E-23 T 26-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RGE_RS11785 245394d6b5e0200739c4fe11a14a33c9 334 PANTHER PTHR22604 7 334 1.1E-84 T 26-04-2016 RGE_RS11785 245394d6b5e0200739c4fe11a14a33c9 334 SUPERFAMILY SSF55347 131 298 7.52E-38 T 26-04-2016 RGE_RS11785 245394d6b5e0200739c4fe11a14a33c9 334 Gene3D G3DSA:3.30.360.10 147 334 4.3E-49 T 26-04-2016 RGE_RS11785 245394d6b5e0200739c4fe11a14a33c9 334 Gene3D G3DSA:3.40.50.720 6 146 4.8E-48 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11785 245394d6b5e0200739c4fe11a14a33c9 334 PANTHER PTHR22604:SF105 7 334 1.1E-84 T 26-04-2016 RGE_RS21250 2af1c5dad75278395b0c46cda9daa88b 230 Gene3D G3DSA:1.20.120.530 75 209 4.0E-27 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS21250 2af1c5dad75278395b0c46cda9daa88b 230 SMART SM00895 82 204 2.2E-15 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS21250 2af1c5dad75278395b0c46cda9daa88b 230 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 72 2.7E-17 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS21250 2af1c5dad75278395b0c46cda9daa88b 230 SUPERFAMILY SSF48008 78 209 2.12E-22 T 26-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RGE_RS21250 2af1c5dad75278395b0c46cda9daa88b 230 Pfam PF07729 FCD domain 82 203 3.8E-19 T 26-04-2016 IPR011711 GntR, C-terminal RGE_RS21250 2af1c5dad75278395b0c46cda9daa88b 230 SUPERFAMILY SSF46785 4 76 8.44E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS21250 2af1c5dad75278395b0c46cda9daa88b 230 SMART SM00345 14 72 1.0E-14 T 26-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RGE_RS21250 2af1c5dad75278395b0c46cda9daa88b 230 PANTHER PTHR11751 8 99 1.4E-20 T 26-04-2016 RGE_RS21250 2af1c5dad75278395b0c46cda9daa88b 230 Gene3D G3DSA:1.10.10.10 4 73 1.7E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS12845 c413fe207e76e7f072a156d9ca0ffe27 293 PANTHER PTHR10992:SF732 3 66 3.4E-46 T 26-04-2016 RGE_RS12845 c413fe207e76e7f072a156d9ca0ffe27 293 PANTHER PTHR10992:SF732 87 292 3.4E-46 T 26-04-2016 RGE_RS12845 c413fe207e76e7f072a156d9ca0ffe27 293 Gene3D G3DSA:3.40.50.1820 3 283 5.3E-64 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12845 c413fe207e76e7f072a156d9ca0ffe27 293 Pfam PF00561 alpha/beta hydrolase fold 22 273 9.3E-22 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS12845 c413fe207e76e7f072a156d9ca0ffe27 293 PANTHER PTHR10992 3 66 3.4E-46 T 26-04-2016 RGE_RS12845 c413fe207e76e7f072a156d9ca0ffe27 293 PANTHER PTHR10992 87 292 3.4E-46 T 26-04-2016 RGE_RS12845 c413fe207e76e7f072a156d9ca0ffe27 293 SUPERFAMILY SSF53474 4 286 1.09E-58 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS13370 f784dd2c55e37bf6b0099209fd35b971 419 SMART SM00244 95 268 9.5E-24 T 26-04-2016 IPR001107 Band 7 domain RGE_RS13370 f784dd2c55e37bf6b0099209fd35b971 419 TIGRFAM TIGR01933 hflK: HflK protein 97 370 3.5E-86 T 26-04-2016 IPR010201 HflK GO:0016021 RGE_RS13370 f784dd2c55e37bf6b0099209fd35b971 419 PANTHER PTHR10264 23 404 7.2E-106 T 26-04-2016 IPR001972 Stomatin family GO:0016020 RGE_RS13370 f784dd2c55e37bf6b0099209fd35b971 419 SUPERFAMILY SSF117892 152 274 8.37E-21 T 26-04-2016 IPR001107 Band 7 domain RGE_RS13370 f784dd2c55e37bf6b0099209fd35b971 419 Pfam PF01145 SPFH domain / Band 7 family 99 279 5.8E-27 T 26-04-2016 IPR001107 Band 7 domain RGE_RS13370 f784dd2c55e37bf6b0099209fd35b971 419 PANTHER PTHR10264:SF51 23 404 7.2E-106 T 26-04-2016 IPR010201 HflK GO:0016021 RGE_RS13370 f784dd2c55e37bf6b0099209fd35b971 419 Pfam PF12221 Bacterial membrane protein N terminal 23 49 1.8E-11 T 26-04-2016 IPR020980 Menbrane protein HflK, N-terminal RGE_RS07495 6c9d1bedb0e2a89c9820eb94f7ff6b1a 106 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 2 105 1.4E-30 T 26-04-2016 IPR005939 Beta-lactamase hydrolase-like GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RGE_RS07495 6c9d1bedb0e2a89c9820eb94f7ff6b1a 106 Pfam PF04273 Putative phosphatase (DUF442) 2 105 4.2E-31 T 26-04-2016 IPR005939 Beta-lactamase hydrolase-like GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RGE_RS07495 6c9d1bedb0e2a89c9820eb94f7ff6b1a 106 Gene3D G3DSA:3.90.190.10 1 105 2.4E-36 T 26-04-2016 IPR029021 Protein-tyrosine phosphatase-like RGE_RS07495 6c9d1bedb0e2a89c9820eb94f7ff6b1a 106 SUPERFAMILY SSF52799 1 97 7.24E-7 T 26-04-2016 IPR029021 Protein-tyrosine phosphatase-like RGE_RS18295 7f933185bf00aa51e1865eacaaf96a49 100 PANTHER PTHR35849 5 92 1.3E-16 T 26-04-2016 RGE_RS18295 7f933185bf00aa51e1865eacaaf96a49 100 Pfam PF13466 STAS domain 8 86 1.5E-18 T 26-04-2016 IPR002645 STAS domain RGE_RS18295 7f933185bf00aa51e1865eacaaf96a49 100 Gene3D G3DSA:3.30.750.24 4 91 7.4E-18 T 26-04-2016 IPR002645 STAS domain RGE_RS18295 7f933185bf00aa51e1865eacaaf96a49 100 SUPERFAMILY SSF52091 5 91 8.24E-17 T 26-04-2016 IPR002645 STAS domain RGE_RS18295 7f933185bf00aa51e1865eacaaf96a49 100 PANTHER PTHR35849:SF2 5 92 1.3E-16 T 26-04-2016 RGE_RS06775 1fbf4f7c1c04c325b5402a0a28522f66 362 Gene3D G3DSA:3.40.50.2000 150 336 1.5E-30 T 26-04-2016 RGE_RS06775 1fbf4f7c1c04c325b5402a0a28522f66 362 SUPERFAMILY SSF53756 2 358 9.11E-78 T 26-04-2016 RGE_RS06775 1fbf4f7c1c04c325b5402a0a28522f66 362 Pfam PF13439 Glycosyltransferase Family 4 15 161 2.5E-15 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS06775 1fbf4f7c1c04c325b5402a0a28522f66 362 Pfam PF00534 Glycosyl transferases group 1 177 336 5.3E-34 T 26-04-2016 IPR001296 Glycosyl transferase, family 1 RGE_RS06775 1fbf4f7c1c04c325b5402a0a28522f66 362 PANTHER PTHR12526 69 359 3.6E-60 T 26-04-2016 RGE_RS09805 31fb0204c0e3997ae2b2786834eae086 337 SUPERFAMILY SSF51161 142 317 1.07E-44 T 26-04-2016 IPR011004 Trimeric LpxA-like RGE_RS09805 31fb0204c0e3997ae2b2786834eae086 337 PANTHER PTHR23416:SF65 147 333 1.0E-84 T 26-04-2016 RGE_RS09805 31fb0204c0e3997ae2b2786834eae086 337 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 275 310 5.8E-5 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS09805 31fb0204c0e3997ae2b2786834eae086 337 Gene3D G3DSA:2.160.10.10 211 317 4.4E-25 T 26-04-2016 RGE_RS09805 31fb0204c0e3997ae2b2786834eae086 337 Gene3D G3DSA:1.10.3130.10 63 210 1.8E-42 T 26-04-2016 RGE_RS09805 31fb0204c0e3997ae2b2786834eae086 337 PANTHER PTHR23416 147 333 1.0E-84 T 26-04-2016 RGE_RS13125 92868ece3cb0442e519a34c4a0857b09 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 71 6.0E-28 T 26-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RGE_RS13125 92868ece3cb0442e519a34c4a0857b09 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 2.5E-42 T 26-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RGE_RS13125 92868ece3cb0442e519a34c4a0857b09 90 PIRSF PIRSF029827 1 90 4.8E-40 T 26-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RGE_RS13125 92868ece3cb0442e519a34c4a0857b09 90 PANTHER PTHR36965:SF1 2 90 2.9E-44 T 26-04-2016 RGE_RS13125 92868ece3cb0442e519a34c4a0857b09 90 Gene3D G3DSA:1.10.3880.10 1 89 1.2E-40 T 26-04-2016 RGE_RS13125 92868ece3cb0442e519a34c4a0857b09 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 28.258 T 26-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RGE_RS13125 92868ece3cb0442e519a34c4a0857b09 90 SUPERFAMILY SSF111148 1 88 1.57E-37 T 26-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RGE_RS13125 92868ece3cb0442e519a34c4a0857b09 90 PANTHER PTHR36965 2 90 2.9E-44 T 26-04-2016 RGE_RS16190 6ada243e7424557ff2b0319cb2a7a5a6 157 Gene3D G3DSA:3.30.110.60 5 97 1.6E-26 T 26-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 RGE_RS16190 6ada243e7424557ff2b0319cb2a7a5a6 157 PANTHER PTHR31846 6 90 1.2E-13 T 26-04-2016 RGE_RS16190 6ada243e7424557ff2b0319cb2a7a5a6 157 SUPERFAMILY SSF75471 5 96 5.89E-25 T 26-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 RGE_RS16190 6ada243e7424557ff2b0319cb2a7a5a6 157 Pfam PF01985 CRS1 / YhbY (CRM) domain 6 89 1.9E-16 T 26-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 RGE_RS16190 6ada243e7424557ff2b0319cb2a7a5a6 157 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 15 96 8.0E-29 T 26-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 RGE_RS16190 6ada243e7424557ff2b0319cb2a7a5a6 157 SMART SM01103 6 89 3.2E-38 T 26-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 26-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 Gene3D G3DSA:3.40.50.2300 9 140 3.2E-39 T 26-04-2016 RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 Gene3D G3DSA:1.10.10.60 407 462 2.3E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 SMART SM00382 166 309 9.8E-14 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 26-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 Pfam PF00158 Sigma-54 interaction domain 148 312 8.3E-70 T 26-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 Gene3D G3DSA:3.40.50.300 144 318 2.9E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 PANTHER PTHR32071 9 463 1.8E-201 T 26-04-2016 RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 Pfam PF00072 Response regulator receiver domain 9 117 5.5E-30 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 Pfam PF02954 Bacterial regulatory protein, Fis family 421 460 1.2E-12 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 426 443 2.3E-10 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 443 463 2.3E-10 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 SUPERFAMILY SSF52172 7 191 2.7E-47 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 Gene3D G3DSA:1.10.8.60 319 392 6.9E-27 T 26-04-2016 RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 SMART SM00448 6 117 4.4E-38 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 SUPERFAMILY SSF52540 152 389 1.66E-70 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04840 479082872a0e7473cf8914f3f2ec9029 463 SUPERFAMILY SSF46689 359 462 4.48E-14 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS19935 347311731d6b2544fdec39580cff8f97 69 Pfam PF14375 Cysteine-rich CWC 9 55 6.3E-11 T 26-04-2016 IPR032720 Cysteine-rich CWC RGE_RS16080 c0ce8d9b0dcdb5d0572a31cf979b34e4 178 SUPERFAMILY SSF56925 26 178 1.31E-19 T 26-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RGE_RS16080 c0ce8d9b0dcdb5d0572a31cf979b34e4 178 Gene3D G3DSA:2.40.160.20 9 178 3.2E-22 T 26-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RGE_RS16080 c0ce8d9b0dcdb5d0572a31cf979b34e4 178 Pfam PF13505 Outer membrane protein beta-barrel domain 7 178 1.2E-22 T 26-04-2016 IPR027385 Outer membrane protein beta-barrel RGE_RS00355 ba7ceade831f99e46c743bd94423ec4f 128 Hamap MF_00048 UPF0102 protein YraN [yraN]. 10 126 22.596 T 26-04-2016 IPR003509 Uncharacterised protein family UPF0102 RGE_RS00355 ba7ceade831f99e46c743bd94423ec4f 128 PANTHER PTHR34039 6 128 8.6E-30 T 26-04-2016 RGE_RS00355 ba7ceade831f99e46c743bd94423ec4f 128 Pfam PF02021 Uncharacterised protein family UPF0102 17 113 1.3E-24 T 26-04-2016 IPR003509 Uncharacterised protein family UPF0102 RGE_RS00355 ba7ceade831f99e46c743bd94423ec4f 128 SUPERFAMILY SSF52980 12 120 1.39E-16 T 26-04-2016 IPR011335 Restriction endonuclease type II-like RGE_RS00355 ba7ceade831f99e46c743bd94423ec4f 128 Gene3D G3DSA:3.40.1350.10 17 127 1.6E-31 T 26-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 RGE_RS00355 ba7ceade831f99e46c743bd94423ec4f 128 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 10 126 9.3E-24 T 26-04-2016 IPR003509 Uncharacterised protein family UPF0102 RGE_RS00355 ba7ceade831f99e46c743bd94423ec4f 128 PANTHER PTHR34039:SF1 6 128 8.6E-30 T 26-04-2016 RGE_RS21150 1d7b63550d937718f4e59a36f90dfd3f 69 Pfam PF06945 Protein of unknown function (DUF1289) 11 58 1.1E-22 T 26-04-2016 IPR010710 Protein of unknown function DUF1289 RGE_RS21150 1d7b63550d937718f4e59a36f90dfd3f 69 PANTHER PTHR35175 4 67 2.3E-18 T 26-04-2016 RGE_RS17615 7ffbc6ef80b4a9945947f5c6ab8ec142 295 Pfam PF01553 Acyltransferase 72 219 4.9E-13 T 26-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RGE_RS17615 7ffbc6ef80b4a9945947f5c6ab8ec142 295 PANTHER PTHR10983:SF15 4 284 2.5E-99 T 26-04-2016 RGE_RS17615 7ffbc6ef80b4a9945947f5c6ab8ec142 295 SUPERFAMILY SSF69593 68 278 4.71E-28 T 26-04-2016 RGE_RS17615 7ffbc6ef80b4a9945947f5c6ab8ec142 295 SMART SM00563 84 220 6.1E-17 T 26-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RGE_RS17615 7ffbc6ef80b4a9945947f5c6ab8ec142 295 PANTHER PTHR10983 4 284 2.5E-99 T 26-04-2016 RGE_RS23140 c8e4eba385ca3844ebd1ea329146df82 228 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 171 188 2.5E-5 T 26-04-2016 RGE_RS23140 c8e4eba385ca3844ebd1ea329146df82 228 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 209 228 2.5E-5 T 26-04-2016 RGE_RS23140 c8e4eba385ca3844ebd1ea329146df82 228 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 189 208 2.5E-5 T 26-04-2016 RGE_RS23140 c8e4eba385ca3844ebd1ea329146df82 228 SUPERFAMILY SSF103088 118 224 1.57E-33 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS23140 c8e4eba385ca3844ebd1ea329146df82 228 PRINTS PR01021 OMPA domain signature 126 148 3.4E-10 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS23140 c8e4eba385ca3844ebd1ea329146df82 228 PRINTS PR01021 OMPA domain signature 156 171 3.4E-10 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS23140 c8e4eba385ca3844ebd1ea329146df82 228 PRINTS PR01021 OMPA domain signature 171 187 3.4E-10 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS23140 c8e4eba385ca3844ebd1ea329146df82 228 ProSitePatterns PS01068 OmpA-like domain. 158 202 - T 26-04-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RGE_RS23140 c8e4eba385ca3844ebd1ea329146df82 228 Pfam PF00691 OmpA family 125 220 5.8E-23 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS23140 c8e4eba385ca3844ebd1ea329146df82 228 Gene3D G3DSA:3.30.1330.60 121 225 2.5E-37 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS23140 c8e4eba385ca3844ebd1ea329146df82 228 PANTHER PTHR30128 124 225 4.7E-39 T 26-04-2016 RGE_RS03090 420b1bd98dd882f488a98fc7bfed2912 249 Pfam PF13531 Bacterial extracellular solute-binding protein 23 246 1.3E-44 T 26-04-2016 RGE_RS03090 420b1bd98dd882f488a98fc7bfed2912 249 PIRSF PIRSF004846 4 249 4.6E-51 T 26-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 RGE_RS03090 420b1bd98dd882f488a98fc7bfed2912 249 SUPERFAMILY SSF53850 21 246 2.77E-60 T 26-04-2016 RGE_RS03090 420b1bd98dd882f488a98fc7bfed2912 249 PANTHER PTHR30632 5 248 4.4E-41 T 26-04-2016 RGE_RS03090 420b1bd98dd882f488a98fc7bfed2912 249 Gene3D G3DSA:3.40.190.10 102 207 6.2E-37 T 26-04-2016 RGE_RS03090 420b1bd98dd882f488a98fc7bfed2912 249 Gene3D G3DSA:3.40.190.10 210 246 4.5E-11 T 26-04-2016 RGE_RS03090 420b1bd98dd882f488a98fc7bfed2912 249 Gene3D G3DSA:3.40.190.10 6 93 4.5E-11 T 26-04-2016 RGE_RS03090 420b1bd98dd882f488a98fc7bfed2912 249 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 27 244 2.1E-75 T 26-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 RGE_RS14120 c0c9f89680c5c767dd561226437d7bb4 326 SUPERFAMILY SSF48179 197 317 3.13E-29 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS14120 c0c9f89680c5c767dd561226437d7bb4 326 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 169 8.9E-21 T 26-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS14120 c0c9f89680c5c767dd561226437d7bb4 326 PANTHER PTHR21708 1 320 3.6E-76 T 26-04-2016 RGE_RS14120 c0c9f89680c5c767dd561226437d7bb4 326 Gene3D G3DSA:3.40.50.720 1 195 1.6E-48 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14120 c0c9f89680c5c767dd561226437d7bb4 326 PANTHER PTHR21708:SF29 1 320 3.6E-76 T 26-04-2016 RGE_RS14120 c0c9f89680c5c767dd561226437d7bb4 326 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 197 316 2.9E-24 T 26-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS14120 c0c9f89680c5c767dd561226437d7bb4 326 SUPERFAMILY SSF51735 1 192 1.37E-14 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14120 c0c9f89680c5c767dd561226437d7bb4 326 Gene3D G3DSA:1.10.1040.10 197 318 1.4E-27 T 26-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RGE_RS14120 c0c9f89680c5c767dd561226437d7bb4 326 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 320 7.9E-54 T 26-04-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RGE_RS03665 e3f9c577f9026501326ae1e5c70c5780 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 8.2E-17 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS03665 e3f9c577f9026501326ae1e5c70c5780 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.7E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS03665 e3f9c577f9026501326ae1e5c70c5780 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.7E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS03665 e3f9c577f9026501326ae1e5c70c5780 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.7E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS03665 e3f9c577f9026501326ae1e5c70c5780 297 PANTHER PTHR30579 1 295 4.0E-109 T 26-04-2016 RGE_RS03665 e3f9c577f9026501326ae1e5c70c5780 297 SUPERFAMILY SSF53850 93 293 2.17E-26 T 26-04-2016 RGE_RS03665 e3f9c577f9026501326ae1e5c70c5780 297 SUPERFAMILY SSF46785 1 107 1.31E-15 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS03665 e3f9c577f9026501326ae1e5c70c5780 297 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 2 293 1.5E-117 T 26-04-2016 IPR017685 HTH-type transcriptional regulator ArgP RGE_RS03665 e3f9c577f9026501326ae1e5c70c5780 297 Gene3D G3DSA:3.40.190.10 92 199 4.8E-40 T 26-04-2016 RGE_RS03665 e3f9c577f9026501326ae1e5c70c5780 297 Pfam PF03466 LysR substrate binding domain 93 291 8.9E-22 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS03665 e3f9c577f9026501326ae1e5c70c5780 297 Gene3D G3DSA:1.10.10.10 2 84 2.3E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS03665 e3f9c577f9026501326ae1e5c70c5780 297 PANTHER PTHR30579:SF2 1 295 4.0E-109 T 26-04-2016 RGE_RS19350 0a5c5cde21d9f70592085bdedb553437 102 SUPERFAMILY SSF52833 10 99 1.53E-27 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS19350 0a5c5cde21d9f70592085bdedb553437 102 Pfam PF07689 KaiB domain 17 97 4.7E-26 T 26-04-2016 IPR011649 KaiB domain GO:0048511 RGE_RS19350 0a5c5cde21d9f70592085bdedb553437 102 SMART SM01248 17 98 5.8E-45 T 26-04-2016 IPR011649 KaiB domain GO:0048511 RGE_RS19350 0a5c5cde21d9f70592085bdedb553437 102 PANTHER PTHR41709 8 102 1.9E-40 T 26-04-2016 RGE_RS19350 0a5c5cde21d9f70592085bdedb553437 102 Gene3D G3DSA:3.40.30.10 10 100 1.0E-35 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS19350 0a5c5cde21d9f70592085bdedb553437 102 PANTHER PTHR41709:SF2 8 102 1.9E-40 T 26-04-2016 RGE_RS15355 d2b0b0ba0a90c3864bf1dc37819a09e6 116 Pfam PF14282 FlxA-like protein 8 90 3.0E-17 T 26-04-2016 IPR025577 FlxA-like protein RGE_RS11230 899df922d3f0d041be4bc10621f8e51a 349 SUPERFAMILY SSF50129 6 171 1.83E-48 T 26-04-2016 IPR011032 GroES-like RGE_RS11230 899df922d3f0d041be4bc10621f8e51a 349 Gene3D G3DSA:3.40.50.720 181 292 3.4E-23 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11230 899df922d3f0d041be4bc10621f8e51a 349 PANTHER PTHR11695 16 346 8.7E-155 T 26-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RGE_RS11230 899df922d3f0d041be4bc10621f8e51a 349 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 26-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RGE_RS11230 899df922d3f0d041be4bc10621f8e51a 349 Gene3D G3DSA:3.90.180.10 3 180 2.6E-61 T 26-04-2016 IPR011032 GroES-like RGE_RS11230 899df922d3f0d041be4bc10621f8e51a 349 SMART SM00829 12 343 0.0057 T 26-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RGE_RS11230 899df922d3f0d041be4bc10621f8e51a 349 PANTHER PTHR11695:SF582 16 346 8.7E-155 T 26-04-2016 RGE_RS11230 899df922d3f0d041be4bc10621f8e51a 349 SUPERFAMILY SSF51735 152 313 3.47E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11230 899df922d3f0d041be4bc10621f8e51a 349 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 143 1.5E-27 T 26-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RGE_RS11230 899df922d3f0d041be4bc10621f8e51a 349 Pfam PF00107 Zinc-binding dehydrogenase 186 309 9.7E-24 T 26-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RGE_RS11230 899df922d3f0d041be4bc10621f8e51a 349 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 179 207 - T 26-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RGE_RS22500 bbc5c8747dc3f61e219ec6ed06412308 473 PANTHER PTHR10160 4 472 3.9E-221 T 26-04-2016 RGE_RS22500 bbc5c8747dc3f61e219ec6ed06412308 473 PIRSF PIRSF000204 1 473 9.1E-207 T 26-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RGE_RS22500 bbc5c8747dc3f61e219ec6ed06412308 473 SUPERFAMILY SSF52467 301 473 2.64E-71 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS22500 bbc5c8747dc3f61e219ec6ed06412308 473 PANTHER PTHR10160:SF24 4 472 3.9E-221 T 26-04-2016 RGE_RS22500 bbc5c8747dc3f61e219ec6ed06412308 473 Gene3D G3DSA:3.40.50.1220 298 473 1.2E-83 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS22500 bbc5c8747dc3f61e219ec6ed06412308 473 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 470 3.6E-183 T 26-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RGE_RS13400 9a7c1349e99da8ee29933257b644de3f 424 PIRSF PIRSF001549 1 415 5.1E-110 T 26-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RGE_RS13400 9a7c1349e99da8ee29933257b644de3f 424 Pfam PF13393 Histidyl-tRNA synthetase 10 312 5.0E-48 T 26-04-2016 RGE_RS13400 9a7c1349e99da8ee29933257b644de3f 424 Pfam PF03129 Anticodon binding domain 338 400 1.6E-7 T 26-04-2016 IPR004154 Anticodon-binding RGE_RS13400 9a7c1349e99da8ee29933257b644de3f 424 Gene3D G3DSA:3.40.50.800 328 417 4.2E-27 T 26-04-2016 IPR004154 Anticodon-binding RGE_RS13400 9a7c1349e99da8ee29933257b644de3f 424 PANTHER PTHR11476 1 401 8.6E-192 T 26-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RGE_RS13400 9a7c1349e99da8ee29933257b644de3f 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 424 31.54 T 26-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 RGE_RS13400 9a7c1349e99da8ee29933257b644de3f 424 PANTHER PTHR11476:SF9 1 401 8.6E-192 T 26-04-2016 RGE_RS13400 9a7c1349e99da8ee29933257b644de3f 424 Gene3D G3DSA:3.30.930.10 6 185 1.4E-90 T 26-04-2016 RGE_RS13400 9a7c1349e99da8ee29933257b644de3f 424 Gene3D G3DSA:3.30.930.10 221 323 1.4E-90 T 26-04-2016 RGE_RS13400 9a7c1349e99da8ee29933257b644de3f 424 SUPERFAMILY SSF55681 7 319 1.21E-98 T 26-04-2016 RGE_RS13400 9a7c1349e99da8ee29933257b644de3f 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 7 405 9.7E-148 T 26-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 RGE_RS13400 9a7c1349e99da8ee29933257b644de3f 424 SUPERFAMILY SSF52954 328 403 5.23E-17 T 26-04-2016 IPR004154 Anticodon-binding RGE_RS02750 737bd6ffaa9450846adc9d5eeb82d8dd 252 PANTHER PTHR32145 5 247 9.3E-61 T 26-04-2016 RGE_RS02750 737bd6ffaa9450846adc9d5eeb82d8dd 252 PANTHER PTHR32145:SF7 5 247 9.3E-61 T 26-04-2016 RGE_RS02750 737bd6ffaa9450846adc9d5eeb82d8dd 252 Pfam PF00753 Metallo-beta-lactamase superfamily 25 217 2.5E-14 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS02750 737bd6ffaa9450846adc9d5eeb82d8dd 252 SMART SM00849 27 217 8.6E-14 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS02750 737bd6ffaa9450846adc9d5eeb82d8dd 252 SUPERFAMILY SSF56281 15 240 1.1E-28 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS02750 737bd6ffaa9450846adc9d5eeb82d8dd 252 Gene3D G3DSA:3.60.15.10 6 236 1.2E-43 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS01340 cf8da547f471218a721b93b624c20174 204 PANTHER PTHR35011 4 180 2.7E-17 T 26-04-2016 RGE_RS01340 cf8da547f471218a721b93b624c20174 204 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 29 157 7.3E-24 T 26-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RGE_RS03410 3c4a472b5d2440ea22c609a6b8952c46 159 PANTHER PTHR30173 10 159 1.4E-25 T 26-04-2016 RGE_RS03410 3c4a472b5d2440ea22c609a6b8952c46 159 Gene3D G3DSA:1.10.1740.10 8 69 2.0E-10 T 26-04-2016 RGE_RS03410 3c4a472b5d2440ea22c609a6b8952c46 159 Gene3D G3DSA:1.10.10.10 94 157 1.2E-13 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS03410 3c4a472b5d2440ea22c609a6b8952c46 159 SUPERFAMILY SSF88946 8 87 2.63E-11 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS03410 3c4a472b5d2440ea22c609a6b8952c46 159 Pfam PF08281 Sigma-70, region 4 106 148 9.9E-14 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS03410 3c4a472b5d2440ea22c609a6b8952c46 159 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 153 1.5E-17 T 26-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS03410 3c4a472b5d2440ea22c609a6b8952c46 159 SUPERFAMILY SSF88659 72 158 6.76E-15 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS03410 3c4a472b5d2440ea22c609a6b8952c46 159 Pfam PF04542 Sigma-70 region 2 8 68 9.6E-10 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS07720 a54b491393508b9ca1dfadfe5230df8f 497 PANTHER PTHR22773 1 491 6.6E-156 T 26-04-2016 RGE_RS07720 a54b491393508b9ca1dfadfe5230df8f 497 Pfam PF00361 Proton-conducting membrane transporter 127 430 4.8E-70 T 26-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RGE_RS07720 a54b491393508b9ca1dfadfe5230df8f 497 PANTHER PTHR22773:SF41 1 491 6.6E-156 T 26-04-2016 RGE_RS07720 a54b491393508b9ca1dfadfe5230df8f 497 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 7 484 18.007 T 26-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RGE_RS07720 a54b491393508b9ca1dfadfe5230df8f 497 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 481 1.0E-133 T 26-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RGE_RS00995 c480e0cec1a3a5eb7e47e3c302caacdd 310 Pfam PF01963 TraB family 46 304 2.4E-45 T 26-04-2016 IPR002816 Pheromone shutdown, TraB RGE_RS00995 c480e0cec1a3a5eb7e47e3c302caacdd 310 PANTHER PTHR40590 46 309 7.5E-16 T 26-04-2016 RGE_RS09050 e18155d737230ecdfe5b24621c666a1c 161 Gene3D G3DSA:3.40.630.30 3 160 3.5E-58 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS09050 e18155d737230ecdfe5b24621c666a1c 161 PANTHER PTHR10545 6 161 3.4E-65 T 26-04-2016 RGE_RS09050 e18155d737230ecdfe5b24621c666a1c 161 SUPERFAMILY SSF55729 7 153 8.14E-37 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS09050 e18155d737230ecdfe5b24621c666a1c 161 Pfam PF00583 Acetyltransferase (GNAT) family 60 140 7.2E-17 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS10665 99d676b00259055dfa6b7b7c31057a70 151 SUPERFAMILY SSF158682 2 147 4.71E-23 T 26-04-2016 IPR029024 TerB-like RGE_RS10665 99d676b00259055dfa6b7b7c31057a70 151 Gene3D G3DSA:1.10.3680.10 26 145 7.7E-13 T 26-04-2016 IPR029024 TerB-like RGE_RS10665 99d676b00259055dfa6b7b7c31057a70 151 Pfam PF05099 Tellurite resistance protein TerB 16 142 1.7E-32 T 26-04-2016 IPR007791 Co-chaperone DjlA, N-terminal RGE_RS06160 e07c81f896a2ba5301959efa093b6960 502 Pfam PF13522 Glutamine amidotransferase domain 63 207 9.1E-17 T 26-04-2016 RGE_RS06160 e07c81f896a2ba5301959efa093b6960 502 PIRSF PIRSF000485 1 480 2.1E-157 T 26-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 RGE_RS06160 e07c81f896a2ba5301959efa093b6960 502 SUPERFAMILY SSF53271 249 479 8.13E-71 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS06160 e07c81f896a2ba5301959efa093b6960 502 PANTHER PTHR11907 1 477 2.7E-238 T 26-04-2016 RGE_RS06160 e07c81f896a2ba5301959efa093b6960 502 SUPERFAMILY SSF56235 2 256 5.15E-67 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS06160 e07c81f896a2ba5301959efa093b6960 502 PANTHER PTHR11907:SF0 1 477 2.7E-238 T 26-04-2016 RGE_RS06160 e07c81f896a2ba5301959efa093b6960 502 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 465 44.336 T 26-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 RGE_RS06160 e07c81f896a2ba5301959efa093b6960 502 Pfam PF00156 Phosphoribosyl transferase domain 272 391 4.1E-9 T 26-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RGE_RS06160 e07c81f896a2ba5301959efa093b6960 502 Gene3D G3DSA:3.60.20.10 2 256 1.4E-59 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS06160 e07c81f896a2ba5301959efa093b6960 502 Gene3D G3DSA:3.40.50.2020 270 440 6.2E-45 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS06160 e07c81f896a2ba5301959efa093b6960 502 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 463 6.3E-155 T 26-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 RGE_RS05950 31d92170014d7dfd209289fb0fe9331c 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.3E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05950 31d92170014d7dfd209289fb0fe9331c 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.3E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05950 31d92170014d7dfd209289fb0fe9331c 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.3E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05950 31d92170014d7dfd209289fb0fe9331c 312 Gene3D G3DSA:3.40.190.10 186 268 3.8E-5 T 26-04-2016 RGE_RS05950 31d92170014d7dfd209289fb0fe9331c 312 SUPERFAMILY SSF53850 93 300 5.58E-32 T 26-04-2016 RGE_RS05950 31d92170014d7dfd209289fb0fe9331c 312 Gene3D G3DSA:1.10.10.10 6 89 1.7E-25 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS05950 31d92170014d7dfd209289fb0fe9331c 312 Gene3D G3DSA:3.40.190.10 94 185 2.2E-19 T 26-04-2016 RGE_RS05950 31d92170014d7dfd209289fb0fe9331c 312 PANTHER PTHR30126 6 312 4.9E-58 T 26-04-2016 RGE_RS05950 31d92170014d7dfd209289fb0fe9331c 312 Pfam PF03466 LysR substrate binding domain 93 298 5.2E-28 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS05950 31d92170014d7dfd209289fb0fe9331c 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.0E-19 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS05950 31d92170014d7dfd209289fb0fe9331c 312 SUPERFAMILY SSF46785 4 115 1.98E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 SUPERFAMILY SSF46785 14 113 6.35E-27 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 SUPERFAMILY SSF50331 133 200 5.35E-17 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 PIRSF PIRSF005763 11 273 2.8E-82 T 26-04-2016 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 Pfam PF03459 TOBE domain 207 267 8.2E-17 T 26-04-2016 IPR005116 Transport-associated OB, type 1 RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 Pfam PF03459 TOBE domain 134 197 4.4E-11 T 26-04-2016 IPR005116 Transport-associated OB, type 1 RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 31 93 4.2E-17 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 132 199 1.4E-15 T 26-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 204 271 3.2E-19 T 26-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 Gene3D G3DSA:2.40.50.100 205 270 9.8E-26 T 26-04-2016 RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 PANTHER PTHR30432 1 273 7.7E-46 T 26-04-2016 RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 Gene3D G3DSA:2.40.50.100 136 199 1.0E-22 T 26-04-2016 RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 Gene3D G3DSA:1.10.10.10 11 135 1.0E-41 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10170 41080f8bae6abd4d8bac57cbf71a7dd6 273 SUPERFAMILY SSF50331 204 271 9.96E-20 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS01080 b88ab9a3931037a8bbee7e9407a95fca 251 PIRSF PIRSF028756 1 245 1.7E-104 T 26-04-2016 IPR016898 Polyphosphate kinase 2 RGE_RS01080 b88ab9a3931037a8bbee7e9407a95fca 251 PANTHER PTHR34383 1 243 3.8E-134 T 26-04-2016 RGE_RS01080 b88ab9a3931037a8bbee7e9407a95fca 251 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 2 225 6.3E-91 T 26-04-2016 IPR022488 Polyphosphate kinase-2-related RGE_RS01080 b88ab9a3931037a8bbee7e9407a95fca 251 PANTHER PTHR34383:SF1 1 243 3.8E-134 T 26-04-2016 RGE_RS01080 b88ab9a3931037a8bbee7e9407a95fca 251 Gene3D G3DSA:3.40.50.300 2 231 1.0E-91 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01080 b88ab9a3931037a8bbee7e9407a95fca 251 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 2 225 7.0E-99 T 26-04-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 RGE_RS01080 b88ab9a3931037a8bbee7e9407a95fca 251 SUPERFAMILY SSF52540 32 220 1.54E-27 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS15640 f21225efcc663c3612429a30da72c8c4 342 Gene3D G3DSA:3.40.710.10 186 304 1.5E-8 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS15640 f21225efcc663c3612429a30da72c8c4 342 SUPERFAMILY SSF56601 82 237 1.47E-5 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS15640 f21225efcc663c3612429a30da72c8c4 342 SUPERFAMILY SSF56601 203 308 4.5E-9 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS08710 91c169cb25b89215828f98c9450ccb6c 336 PANTHER PTHR32196 31 332 5.3E-78 T 26-04-2016 RGE_RS08710 91c169cb25b89215828f98c9450ccb6c 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 322 2.1E-47 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS08710 91c169cb25b89215828f98c9450ccb6c 336 PANTHER PTHR32196:SF21 31 332 5.3E-78 T 26-04-2016 RGE_RS19180 9c53ccec2774903ba9adab63a689ed1a 399 Pfam PF05762 VWA domain containing CoxE-like protein 170 386 4.3E-71 T 26-04-2016 IPR008912 Uncharacterised protein family CoxE-like RGE_RS19180 9c53ccec2774903ba9adab63a689ed1a 399 PANTHER PTHR39338:SF1 1 399 1.2E-103 T 26-04-2016 RGE_RS19180 9c53ccec2774903ba9adab63a689ed1a 399 SUPERFAMILY SSF53300 221 350 5.38E-12 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS19180 9c53ccec2774903ba9adab63a689ed1a 399 PIRSF PIRSF010256 7 396 1.2E-111 T 26-04-2016 IPR011195 Uncharacterised conserved protein UCP010256 RGE_RS19180 9c53ccec2774903ba9adab63a689ed1a 399 PANTHER PTHR39338 1 399 1.2E-103 T 26-04-2016 RGE_RS01310 5b244e87178c56dbabdb9801df775b4b 178 Gene3D G3DSA:3.40.30.10 21 175 8.2E-35 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS01310 5b244e87178c56dbabdb9801df775b4b 178 PANTHER PTHR10681 35 176 3.9E-30 T 26-04-2016 RGE_RS01310 5b244e87178c56dbabdb9801df775b4b 178 SUPERFAMILY SSF52833 43 175 8.17E-32 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS01310 5b244e87178c56dbabdb9801df775b4b 178 ProSitePatterns PS00194 Thioredoxin family active site. 68 86 - T 26-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RGE_RS01310 5b244e87178c56dbabdb9801df775b4b 178 Pfam PF08534 Redoxin 40 158 1.9E-11 T 26-04-2016 IPR013740 Redoxin GO:0016491 RGE_RS01310 5b244e87178c56dbabdb9801df775b4b 178 PANTHER PTHR10681:SF107 35 176 3.9E-30 T 26-04-2016 RGE_RS17460 42d11aeb999a1b6630813b7ca51fbcbe 220 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 21 162 3.9E-44 T 26-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RGE_RS17460 42d11aeb999a1b6630813b7ca51fbcbe 220 PRINTS PR00446 Hydrogen uptake protein signature 32 43 5.5E-36 T 26-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RGE_RS17460 42d11aeb999a1b6630813b7ca51fbcbe 220 PRINTS PR00446 Hydrogen uptake protein signature 84 100 5.5E-36 T 26-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RGE_RS17460 42d11aeb999a1b6630813b7ca51fbcbe 220 PRINTS PR00446 Hydrogen uptake protein signature 52 69 5.5E-36 T 26-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RGE_RS17460 42d11aeb999a1b6630813b7ca51fbcbe 220 PRINTS PR00446 Hydrogen uptake protein signature 73 83 5.5E-36 T 26-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RGE_RS17460 42d11aeb999a1b6630813b7ca51fbcbe 220 PRINTS PR00446 Hydrogen uptake protein signature 20 32 5.5E-36 T 26-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RGE_RS17460 42d11aeb999a1b6630813b7ca51fbcbe 220 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 20 171 7.1E-63 T 26-04-2016 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 RGE_RS17460 42d11aeb999a1b6630813b7ca51fbcbe 220 PANTHER PTHR30302 15 182 2.3E-61 T 26-04-2016 RGE_RS17460 42d11aeb999a1b6630813b7ca51fbcbe 220 Pfam PF01750 Hydrogenase maturation protease 37 162 5.4E-42 T 26-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RGE_RS17460 42d11aeb999a1b6630813b7ca51fbcbe 220 SUPERFAMILY SSF53163 19 174 3.92E-43 T 26-04-2016 IPR023430 Peptidase HybD-like domain RGE_RS17460 42d11aeb999a1b6630813b7ca51fbcbe 220 Gene3D G3DSA:3.40.50.1450 19 175 4.1E-47 T 26-04-2016 IPR023430 Peptidase HybD-like domain RGE_RS17460 42d11aeb999a1b6630813b7ca51fbcbe 220 PANTHER PTHR30302:SF1 15 182 2.3E-61 T 26-04-2016 RGE_RS10760 a436f2ee81397fe76346f000ff7a80d9 247 Pfam PF01578 Cytochrome C assembly protein 21 186 1.7E-29 T 26-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RGE_RS10760 a436f2ee81397fe76346f000ff7a80d9 247 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 123 143 4.3E-46 T 26-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10760 a436f2ee81397fe76346f000ff7a80d9 247 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 64 84 4.3E-46 T 26-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10760 a436f2ee81397fe76346f000ff7a80d9 247 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 47 64 4.3E-46 T 26-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10760 a436f2ee81397fe76346f000ff7a80d9 247 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 102 122 4.3E-46 T 26-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10760 a436f2ee81397fe76346f000ff7a80d9 247 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 158 184 4.3E-46 T 26-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS10760 a436f2ee81397fe76346f000ff7a80d9 247 PANTHER PTHR30071 12 226 5.8E-62 T 26-04-2016 RGE_RS10760 a436f2ee81397fe76346f000ff7a80d9 247 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 47 228 1.2E-66 T 26-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RGE_RS21105 d81eaefb2b44a32beb4f771b802977f9 512 SUPERFAMILY SSF56801 6 507 7.59E-143 T 26-04-2016 RGE_RS21105 d81eaefb2b44a32beb4f771b802977f9 512 Gene3D G3DSA:3.40.50.980 172 325 5.3E-39 T 26-04-2016 RGE_RS21105 d81eaefb2b44a32beb4f771b802977f9 512 PANTHER PTHR24096 35 512 3.9E-187 T 26-04-2016 RGE_RS21105 d81eaefb2b44a32beb4f771b802977f9 512 Gene3D G3DSA:3.30.300.30 406 505 1.6E-30 T 26-04-2016 RGE_RS21105 d81eaefb2b44a32beb4f771b802977f9 512 Gene3D G3DSA:2.30.38.10 328 402 2.5E-28 T 26-04-2016 RGE_RS21105 d81eaefb2b44a32beb4f771b802977f9 512 ProSitePatterns PS00455 Putative AMP-binding domain signature. 166 177 - T 26-04-2016 IPR020845 AMP-binding, conserved site RGE_RS21105 d81eaefb2b44a32beb4f771b802977f9 512 Pfam PF00501 AMP-binding enzyme 33 411 5.0E-91 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS21105 d81eaefb2b44a32beb4f771b802977f9 512 Pfam PF13193 AMP-binding enzyme C-terminal domain 420 495 2.9E-16 T 26-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RGE_RS21105 d81eaefb2b44a32beb4f771b802977f9 512 PANTHER PTHR24096:SF206 35 512 3.9E-187 T 26-04-2016 RGE_RS21105 d81eaefb2b44a32beb4f771b802977f9 512 Gene3D G3DSA:3.40.50.980 6 171 1.4E-30 T 26-04-2016 RGE_RS14345 255fee29908515b42b54b17c113cf173 297 SUPERFAMILY SSF46785 3 113 1.12E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14345 255fee29908515b42b54b17c113cf173 297 PANTHER PTHR30419:SF3 1 290 7.9E-69 T 26-04-2016 RGE_RS14345 255fee29908515b42b54b17c113cf173 297 Gene3D G3DSA:1.10.10.10 4 87 2.5E-27 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14345 255fee29908515b42b54b17c113cf173 297 Pfam PF03466 LysR substrate binding domain 90 292 1.5E-43 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS14345 255fee29908515b42b54b17c113cf173 297 SUPERFAMILY SSF53850 90 292 2.29E-42 T 26-04-2016 RGE_RS14345 255fee29908515b42b54b17c113cf173 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 2.0E-19 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14345 255fee29908515b42b54b17c113cf173 297 Gene3D G3DSA:3.40.190.10 178 263 2.2E-17 T 26-04-2016 RGE_RS14345 255fee29908515b42b54b17c113cf173 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.5E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14345 255fee29908515b42b54b17c113cf173 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.5E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14345 255fee29908515b42b54b17c113cf173 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.5E-8 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14345 255fee29908515b42b54b17c113cf173 297 Gene3D G3DSA:3.40.190.10 92 177 1.4E-18 T 26-04-2016 RGE_RS14345 255fee29908515b42b54b17c113cf173 297 PANTHER PTHR30419 1 290 7.9E-69 T 26-04-2016 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 281 294 7.3E-123 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 185 208 7.3E-123 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 229 247 7.3E-123 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 67 91 7.3E-123 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 253 279 7.3E-123 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 113 136 7.3E-123 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 156 180 7.3E-123 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 44 66 7.3E-123 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 211 228 7.3E-123 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 Gene3D G3DSA:3.40.50.700 47 223 1.6E-58 T 26-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 Gene3D G3DSA:4.10.480.10 224 306 1.8E-39 T 26-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 2 347 1.4E-170 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 PIRSF PIRSF000310 2 353 1.3E-143 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 59 204 1.6E-29 T 26-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 224 305 5.6E-32 T 26-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 PANTHER PTHR30013:SF6 1 361 2.0E-282 T 26-04-2016 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 PANTHER PTHR30013 1 361 2.0E-282 T 26-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 SUPERFAMILY SSF56770 44 307 1.57E-90 T 26-04-2016 RGE_RS17435 e5eefadd22d6db11481c4a1f8edb0d12 362 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 13 42 2.6E-6 T 26-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RGE_RS04880 1fd27997640a7c0885137ef07a01b920 257 Pfam PF12833 Helix-turn-helix domain 178 256 4.1E-21 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS04880 1fd27997640a7c0885137ef07a01b920 257 Gene3D G3DSA:1.10.10.60 210 255 1.8E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04880 1fd27997640a7c0885137ef07a01b920 257 SMART SM00342 172 254 3.0E-19 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS04880 1fd27997640a7c0885137ef07a01b920 257 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 209 250 - T 26-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RGE_RS04880 1fd27997640a7c0885137ef07a01b920 257 Gene3D G3DSA:2.60.120.10 30 82 1.2E-4 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS04880 1fd27997640a7c0885137ef07a01b920 257 SUPERFAMILY SSF51182 30 181 1.6E-9 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS04880 1fd27997640a7c0885137ef07a01b920 257 PANTHER PTHR11019 13 257 6.9E-59 T 26-04-2016 RGE_RS04880 1fd27997640a7c0885137ef07a01b920 257 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 223 238 2.6E-5 T 26-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RGE_RS04880 1fd27997640a7c0885137ef07a01b920 257 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 238 254 2.6E-5 T 26-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RGE_RS04880 1fd27997640a7c0885137ef07a01b920 257 PANTHER PTHR11019:SF53 13 257 6.9E-59 T 26-04-2016 RGE_RS04880 1fd27997640a7c0885137ef07a01b920 257 SUPERFAMILY SSF46689 209 256 2.37E-8 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS04880 1fd27997640a7c0885137ef07a01b920 257 Gene3D G3DSA:1.10.10.60 152 209 1.1E-9 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 PANTHER PTHR22573:SF15 2 440 1.5E-148 T 26-04-2016 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 440 1.1E-174 T 26-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 444 45.402 T 26-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 Gene3D G3DSA:3.40.120.10 251 359 1.2E-33 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 135 3.1E-40 T 26-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 365 2.0E-32 T 26-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 SUPERFAMILY SSF53738 258 364 1.06E-29 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 439 5.2E-15 T 26-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 SUPERFAMILY SSF53738 156 255 3.92E-30 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 PANTHER PTHR22573 2 440 1.5E-148 T 26-04-2016 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 Gene3D G3DSA:3.40.120.10 3 151 3.4E-45 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 26-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 Gene3D G3DSA:3.30.310.50 360 439 9.2E-15 T 26-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 5.0E-14 T 26-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 5.0E-14 T 26-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 5.0E-14 T 26-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 Gene3D G3DSA:3.40.120.10 176 250 1.9E-25 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 1.8E-21 T 26-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 SUPERFAMILY SSF55957 358 441 2.88E-19 T 26-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS16170 e7a67cf656e3bb01e79203103a2c715e 444 SUPERFAMILY SSF53738 2 181 3.06E-46 T 26-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RGE_RS06595 f0f064b0b69f12d6ff0be186041e6994 336 PANTHER PTHR11101 1 334 5.8E-96 T 26-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 RGE_RS06595 f0f064b0b69f12d6ff0be186041e6994 336 Pfam PF01384 Phosphate transporter family 25 169 1.0E-35 T 26-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 RGE_RS06595 f0f064b0b69f12d6ff0be186041e6994 336 Pfam PF01384 Phosphate transporter family 171 325 3.8E-52 T 26-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 RGE_RS10700 d385035e958b3a0a7c4a97720593d66b 127 PANTHER PTHR11527 22 126 6.0E-20 T 26-04-2016 IPR031107 Small heat shock protein HSP20 RGE_RS10700 d385035e958b3a0a7c4a97720593d66b 127 SUPERFAMILY SSF49764 13 126 4.71E-25 T 26-04-2016 IPR008978 HSP20-like chaperone RGE_RS10700 d385035e958b3a0a7c4a97720593d66b 127 PANTHER PTHR11527:SF118 22 126 6.0E-20 T 26-04-2016 RGE_RS10700 d385035e958b3a0a7c4a97720593d66b 127 Gene3D G3DSA:2.60.40.790 9 126 2.7E-23 T 26-04-2016 IPR008978 HSP20-like chaperone RGE_RS10700 d385035e958b3a0a7c4a97720593d66b 127 Pfam PF00011 Hsp20/alpha crystallin family 26 125 1.0E-15 T 26-04-2016 IPR002068 Alpha crystallin/Hsp20 domain RGE_RS07780 7696b13cbce43487f85f57c565cf5f8b 432 Gene3D G3DSA:3.40.640.10 8 290 2.6E-116 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS07780 7696b13cbce43487f85f57c565cf5f8b 432 PANTHER PTHR11808:SF12 269 430 1.7E-208 T 26-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RGE_RS07780 7696b13cbce43487f85f57c565cf5f8b 432 PANTHER PTHR11808:SF12 4 239 1.7E-208 T 26-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RGE_RS07780 7696b13cbce43487f85f57c565cf5f8b 432 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 9 426 6.3E-172 T 26-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RGE_RS07780 7696b13cbce43487f85f57c565cf5f8b 432 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS07780 7696b13cbce43487f85f57c565cf5f8b 432 PIRSF PIRSF001434 1 429 5.8E-135 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS07780 7696b13cbce43487f85f57c565cf5f8b 432 PANTHER PTHR11808 269 430 1.7E-208 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS07780 7696b13cbce43487f85f57c565cf5f8b 432 PANTHER PTHR11808 4 239 1.7E-208 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS07780 7696b13cbce43487f85f57c565cf5f8b 432 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 426 1.6E-131 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS07780 7696b13cbce43487f85f57c565cf5f8b 432 SUPERFAMILY SSF53383 8 426 2.95E-126 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS07780 7696b13cbce43487f85f57c565cf5f8b 432 Gene3D G3DSA:3.90.1150.10 292 428 1.5E-47 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 Gene3D G3DSA:3.30.300.20 226 325 6.8E-39 T 26-04-2016 IPR015946 K homology domain-like, alpha/beta RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 PANTHER PTHR11649:SF3 33 329 7.8E-104 T 26-04-2016 RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 Gene3D G3DSA:3.40.50.300 37 225 1.6E-39 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 PANTHER PTHR11649 33 329 7.8E-104 T 26-04-2016 RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 38 202 5.0E-26 T 26-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 Hamap MF_00367 GTPase Era [era]. 35 328 34.496 T 26-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 Pfam PF01926 50S ribosome-binding GTPase 40 157 8.6E-23 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 SUPERFAMILY SSF52540 40 238 1.24E-39 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 SUPERFAMILY SSF54814 214 329 1.21E-40 T 26-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 Pfam PF07650 KH domain 241 316 2.6E-19 T 26-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 TIGRFAM TIGR00436 era: GTP-binding protein Era 39 311 2.8E-81 T 26-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 112 130 9.3E-7 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS20015 adabba9a9ff68c6233427a656fc2b16b 329 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 40 60 9.3E-7 T 26-04-2016 IPR006073 GTP binding domain GO:0005525 RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 PANTHER PTHR32089 47 513 4.4E-94 T 26-04-2016 RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 Gene3D G3DSA:3.30.450.20 21 114 3.6E-24 T 26-04-2016 RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 2.2E-43 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 2.2E-43 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 2.2E-43 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 2.2E-43 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 511 9.4E-49 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 Pfam PF08447 PAS fold 31 114 8.2E-15 T 26-04-2016 IPR013655 PAS fold-3 GO:0005515 RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 SMART SM00086 80 121 2.5E-4 T 26-04-2016 IPR001610 PAC motif RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 SUPERFAMILY SSF55785 20 114 1.64E-26 T 26-04-2016 IPR000014 PAS domain RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 SUPERFAMILY SSF58104 232 513 3.4E-61 T 26-04-2016 RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 22 113 4.9E-13 T 26-04-2016 IPR000014 PAS domain RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 Gene3D G3DSA:1.10.287.950 281 483 1.1E-51 T 26-04-2016 RGE_RS00435 02837e700684a7a8992a5e7922a78dc0 513 SMART SM00283 265 512 1.0E-66 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS04925 542fd8d537267dfe7a5d3fbe2771c036 298 PANTHER PTHR10209 1 295 3.2E-101 T 26-04-2016 RGE_RS04925 542fd8d537267dfe7a5d3fbe2771c036 298 SUPERFAMILY SSF51197 7 295 6.25E-88 T 26-04-2016 RGE_RS04925 542fd8d537267dfe7a5d3fbe2771c036 298 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 8 109 1.0E-20 T 26-04-2016 IPR026992 Non-haem dioxygenase N-terminal domain RGE_RS04925 542fd8d537267dfe7a5d3fbe2771c036 298 PANTHER PTHR10209:SF146 1 295 3.2E-101 T 26-04-2016 RGE_RS04925 542fd8d537267dfe7a5d3fbe2771c036 298 Gene3D G3DSA:2.60.120.330 2 295 2.8E-94 T 26-04-2016 IPR027443 Isopenicillin N synthase-like RGE_RS04925 542fd8d537267dfe7a5d3fbe2771c036 298 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 159 256 2.8E-24 T 26-04-2016 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 RGE_RS18035 2dcff050b3c02ff806bf51c75b0aaa42 196 SUPERFAMILY SSF55729 4 177 1.66E-38 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS18035 2dcff050b3c02ff806bf51c75b0aaa42 196 Gene3D G3DSA:3.40.630.30 2 192 1.0E-58 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS18035 2dcff050b3c02ff806bf51c75b0aaa42 196 PANTHER PTHR13256 1 189 6.4E-89 T 26-04-2016 RGE_RS18035 2dcff050b3c02ff806bf51c75b0aaa42 196 PANTHER PTHR13256:SF20 1 189 6.4E-89 T 26-04-2016 RGE_RS18035 2dcff050b3c02ff806bf51c75b0aaa42 196 Pfam PF13302 Acetyltransferase (GNAT) domain 16 151 2.8E-17 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 SMART SM00304 209 261 1.0E-7 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 PANTHER PTHR32089 169 512 5.1E-108 T 26-04-2016 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 506 5.4E-49 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 PANTHER PTHR32089:SF63 169 512 5.1E-108 T 26-04-2016 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 SUPERFAMILY SSF58104 229 510 8.76E-62 T 26-04-2016 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 SMART SM00283 262 509 3.4E-72 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 Pfam PF00672 HAMP domain 190 257 2.5E-13 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 62 77 3.5E-43 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 437 466 3.5E-43 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 389 418 3.5E-43 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 283 312 3.5E-43 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 360 387 3.5E-43 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 187 207 3.5E-43 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS05640 f9c2f3693fba7c5c985de34c3f7c80eb 514 Gene3D G3DSA:1.10.287.950 277 481 8.3E-52 T 26-04-2016 RGE_RS03215 be9675ac1ffe2c21c59ec0619cd8feb7 212 PANTHER PTHR11935 1 210 1.6E-103 T 26-04-2016 RGE_RS03215 be9675ac1ffe2c21c59ec0619cd8feb7 212 PANTHER PTHR11935:SF115 1 210 1.6E-103 T 26-04-2016 RGE_RS03215 be9675ac1ffe2c21c59ec0619cd8feb7 212 SUPERFAMILY SSF56281 2 210 1.57E-56 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS03215 be9675ac1ffe2c21c59ec0619cd8feb7 212 SMART SM00849 13 193 1.9E-37 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS03215 be9675ac1ffe2c21c59ec0619cd8feb7 212 Gene3D G3DSA:3.60.15.10 3 210 1.3E-56 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS03215 be9675ac1ffe2c21c59ec0619cd8feb7 212 Pfam PF00753 Metallo-beta-lactamase superfamily 10 193 2.2E-31 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS16470 6097876213b0eac95758f65b841f1a95 296 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 1 288 17.703 T 26-04-2016 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RGE_RS16470 6097876213b0eac95758f65b841f1a95 296 Pfam PF01040 UbiA prenyltransferase family 17 255 3.3E-26 T 26-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RGE_RS16470 6097876213b0eac95758f65b841f1a95 296 PANTHER PTHR13929 1 296 2.6E-53 T 26-04-2016 RGE_RS16470 6097876213b0eac95758f65b841f1a95 296 PIRSF PIRSF005355 1 293 6.3E-69 T 26-04-2016 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 RGE_RS16470 6097876213b0eac95758f65b841f1a95 296 PANTHER PTHR13929:SF0 1 296 2.6E-53 T 26-04-2016 RGE_RS16470 6097876213b0eac95758f65b841f1a95 296 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 9 283 1.7E-41 T 26-04-2016 RGE_RS18505 d9facddeb835e9e66fec2a9905ff319e 303 PANTHER PTHR30406 1 303 8.4E-80 T 26-04-2016 RGE_RS18505 d9facddeb835e9e66fec2a9905ff319e 303 SUPERFAMILY SSF161098 65 288 4.97E-55 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS18505 d9facddeb835e9e66fec2a9905ff319e 303 PANTHER PTHR30406:SF2 1 303 8.4E-80 T 26-04-2016 RGE_RS18505 d9facddeb835e9e66fec2a9905ff319e 303 Gene3D G3DSA:1.10.3720.10 76 295 1.5E-53 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS18505 d9facddeb835e9e66fec2a9905ff319e 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 291 3.7E-19 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS02715 01ff31c3f468375b36557a75e2ac2074 322 Pfam PF00294 pfkB family carbohydrate kinase 8 307 1.6E-52 T 26-04-2016 IPR011611 Carbohydrate kinase PfkB RGE_RS02715 01ff31c3f468375b36557a75e2ac2074 322 PANTHER PTHR10584:SF57 8 307 3.4E-100 T 26-04-2016 RGE_RS02715 01ff31c3f468375b36557a75e2ac2074 322 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 260 273 - T 26-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RGE_RS02715 01ff31c3f468375b36557a75e2ac2074 322 Gene3D G3DSA:3.40.1190.20 7 307 1.5E-64 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS02715 01ff31c3f468375b36557a75e2ac2074 322 SUPERFAMILY SSF53613 8 311 1.87E-64 T 26-04-2016 IPR029056 Ribokinase-like RGE_RS02715 01ff31c3f468375b36557a75e2ac2074 322 PANTHER PTHR10584 8 307 3.4E-100 T 26-04-2016 RGE_RS16435 fac4c864eb54bb80c319f906c2e67f80 310 Pfam PF00348 Polyprenyl synthetase 26 242 2.4E-44 T 26-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RGE_RS16435 fac4c864eb54bb80c319f906c2e67f80 310 PANTHER PTHR12001:SF23 1 252 7.3E-62 T 26-04-2016 RGE_RS16435 fac4c864eb54bb80c319f906c2e67f80 310 PANTHER PTHR12001 1 252 7.3E-62 T 26-04-2016 IPR017446 Polyprenyl synthetase-related RGE_RS16435 fac4c864eb54bb80c319f906c2e67f80 310 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 200 212 - T 26-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RGE_RS16435 fac4c864eb54bb80c319f906c2e67f80 310 SUPERFAMILY SSF48576 4 273 3.12E-63 T 26-04-2016 IPR008949 Isoprenoid synthase domain RGE_RS16435 fac4c864eb54bb80c319f906c2e67f80 310 Gene3D G3DSA:1.10.600.10 4 258 8.7E-63 T 26-04-2016 IPR008949 Isoprenoid synthase domain RGE_RS16435 fac4c864eb54bb80c319f906c2e67f80 310 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 77 93 - T 26-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RGE_RS21620 e604cc3a424504dcde9d56b3e3f37064 360 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 35 3.9E-4 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS21620 e604cc3a424504dcde9d56b3e3f37064 360 Pfam PF16074 Type IV Pilus-assembly protein W 242 357 1.5E-9 T 26-04-2016 IPR032092 Type IV Pilus-assembly protein W GO:0043683 RGE_RS09680 760799a1927bc8fd98cd09e399164ddf 217 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 214 25.608 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS09680 760799a1927bc8fd98cd09e399164ddf 217 PRINTS PR01008 Flagellar L-ring protein signature 130 145 8.7E-21 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS09680 760799a1927bc8fd98cd09e399164ddf 217 PRINTS PR01008 Flagellar L-ring protein signature 193 207 8.7E-21 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS09680 760799a1927bc8fd98cd09e399164ddf 217 PRINTS PR01008 Flagellar L-ring protein signature 156 172 8.7E-21 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS09680 760799a1927bc8fd98cd09e399164ddf 217 PRINTS PR01008 Flagellar L-ring protein signature 177 191 8.7E-21 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS09680 760799a1927bc8fd98cd09e399164ddf 217 PRINTS PR01008 Flagellar L-ring protein signature 63 75 8.7E-21 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS09680 760799a1927bc8fd98cd09e399164ddf 217 Pfam PF02107 Flagellar L-ring protein 42 215 1.3E-54 T 26-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RGE_RS09680 760799a1927bc8fd98cd09e399164ddf 217 PANTHER PTHR34933:SF2 18 217 6.1E-76 T 26-04-2016 RGE_RS09680 760799a1927bc8fd98cd09e399164ddf 217 PANTHER PTHR34933 18 217 6.1E-76 T 26-04-2016 RGE_RS16710 d9a9c7a8416489a96a4ccd7411b1d87f 308 PANTHER PTHR23024 31 304 2.9E-89 T 26-04-2016 RGE_RS16710 d9a9c7a8416489a96a4ccd7411b1d87f 308 Gene3D G3DSA:3.40.50.1820 2 304 1.0E-95 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS16710 d9a9c7a8416489a96a4ccd7411b1d87f 308 PANTHER PTHR23024:SF24 31 304 2.9E-89 T 26-04-2016 RGE_RS16710 d9a9c7a8416489a96a4ccd7411b1d87f 308 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 74 90 - T 26-04-2016 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 RGE_RS16710 d9a9c7a8416489a96a4ccd7411b1d87f 308 SUPERFAMILY SSF53474 17 303 1.58E-74 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS16710 d9a9c7a8416489a96a4ccd7411b1d87f 308 Pfam PF07859 alpha/beta hydrolase fold 74 279 1.7E-77 T 26-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 RGE_RS17830 5d502ba628aea5a94b58a91ee277152b 241 SMART SM00448 5 118 3.3E-26 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17830 5d502ba628aea5a94b58a91ee277152b 241 Pfam PF04397 LytTr DNA-binding domain 142 238 7.1E-18 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS17830 5d502ba628aea5a94b58a91ee277152b 241 Pfam PF00072 Response regulator receiver domain 7 118 7.4E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17830 5d502ba628aea5a94b58a91ee277152b 241 SMART SM00850 141 239 2.7E-24 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS17830 5d502ba628aea5a94b58a91ee277152b 241 Gene3D G3DSA:2.40.50.40 135 196 2.6E-11 T 26-04-2016 RGE_RS17830 5d502ba628aea5a94b58a91ee277152b 241 PANTHER PTHR26402 5 135 4.1E-27 T 26-04-2016 RGE_RS17830 5d502ba628aea5a94b58a91ee277152b 241 PANTHER PTHR26402 219 231 4.1E-27 T 26-04-2016 RGE_RS17830 5d502ba628aea5a94b58a91ee277152b 241 Gene3D G3DSA:3.40.50.2300 2 126 2.1E-29 T 26-04-2016 RGE_RS17830 5d502ba628aea5a94b58a91ee277152b 241 SUPERFAMILY SSF52172 4 130 4.7E-31 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS09625 6d6fd6261b21ef860eecb5c5b9e44c42 328 PANTHER PTHR30329:SF2 11 303 1.4E-53 T 26-04-2016 RGE_RS09625 6d6fd6261b21ef860eecb5c5b9e44c42 328 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 23 68 1.1E-13 T 26-04-2016 IPR025713 Motility protein B, N-terminal domain RGE_RS09625 6d6fd6261b21ef860eecb5c5b9e44c42 328 SUPERFAMILY SSF103088 172 279 4.45E-17 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS09625 6d6fd6261b21ef860eecb5c5b9e44c42 328 Gene3D G3DSA:3.30.1330.60 170 279 7.0E-14 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS09625 6d6fd6261b21ef860eecb5c5b9e44c42 328 Pfam PF00691 OmpA family 184 272 3.4E-7 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS09625 6d6fd6261b21ef860eecb5c5b9e44c42 328 PANTHER PTHR30329 11 303 1.4E-53 T 26-04-2016 RGE_RS12900 89aa9e7f54310cbc7f2b2913d2cd92fd 159 PANTHER PTHR35585 1 143 1.5E-12 T 26-04-2016 RGE_RS12900 89aa9e7f54310cbc7f2b2913d2cd92fd 159 Gene3D G3DSA:1.20.120.520 7 118 1.5E-4 T 26-04-2016 RGE_RS12900 89aa9e7f54310cbc7f2b2913d2cd92fd 159 Pfam PF01814 Hemerythrin HHE cation binding domain 2 113 2.8E-10 T 26-04-2016 IPR012312 Haemerythrin-like RGE_RS01995 38913c41924de99054875ecc8300ef96 460 TIGRFAM TIGR03013 EpsB_2: sugar transferase, PEP-CTERM system associated 23 460 6.0E-147 T 26-04-2016 IPR017464 Sugar transferase, PEP-CTERM system associated RGE_RS01995 38913c41924de99054875ecc8300ef96 460 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 20 460 1.4E-126 T 26-04-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase RGE_RS01995 38913c41924de99054875ecc8300ef96 460 PANTHER PTHR30576:SF0 11 460 3.3E-108 T 26-04-2016 RGE_RS01995 38913c41924de99054875ecc8300ef96 460 PANTHER PTHR30576 11 460 3.3E-108 T 26-04-2016 RGE_RS01995 38913c41924de99054875ecc8300ef96 460 Pfam PF02397 Bacterial sugar transferase 271 454 2.4E-56 T 26-04-2016 IPR003362 Bacterial sugar transferase RGE_RS10065 120263ca1d669d186e0f5bb6c51dc002 507 PANTHER PTHR22773 78 343 2.2E-79 T 26-04-2016 RGE_RS10065 120263ca1d669d186e0f5bb6c51dc002 507 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 234 260 2.2E-13 T 26-04-2016 RGE_RS10065 120263ca1d669d186e0f5bb6c51dc002 507 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 212 233 2.2E-13 T 26-04-2016 RGE_RS10065 120263ca1d669d186e0f5bb6c51dc002 507 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 146 167 2.2E-13 T 26-04-2016 RGE_RS10065 120263ca1d669d186e0f5bb6c51dc002 507 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 301 313 2.2E-13 T 26-04-2016 RGE_RS10065 120263ca1d669d186e0f5bb6c51dc002 507 PANTHER PTHR22773:SF67 78 343 2.2E-79 T 26-04-2016 RGE_RS10065 120263ca1d669d186e0f5bb6c51dc002 507 Pfam PF00361 Proton-conducting membrane transporter 122 346 1.8E-38 T 26-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 SUPERFAMILY SSF54680 422 493 5.62E-13 T 26-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 TIGRFAM TIGR02645 ARCH_P_rylase: putative thymidine phosphorylase 6 504 8.8E-180 T 26-04-2016 IPR013466 Thymidine phosphorylase/AMP phosphorylase GO:0016763 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 Gene3D G3DSA:3.90.1170.30 420 494 1.6E-14 T 26-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 434 482 1.8E-6 T 26-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 SMART SM00941 434 501 2.3E-11 T 26-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 Gene3D G3DSA:1.20.970.10 101 159 4.2E-10 T 26-04-2016 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 SUPERFAMILY SSF52418 170 415 1.24E-64 T 26-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 PANTHER PTHR10515:SF0 70 481 2.6E-126 T 26-04-2016 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 Pfam PF00591 Glycosyl transferase family, a/b domain 172 304 3.9E-7 T 26-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 Gene3D G3DSA:3.40.1030.10 171 416 2.5E-70 T 26-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 Hamap MF_00703 Putative thymidine phosphorylase. 7 505 57.513 T 26-04-2016 IPR028579 Putative thymidine phosphorylase KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 Pfam PF02885 Glycosyl transferase family, helical bundle domain 99 159 6.9E-9 T 26-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 206 221 - T 26-04-2016 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 PANTHER PTHR10515 70 481 2.6E-126 T 26-04-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 RGE_RS20455 c09727c313eed64e66685ff2ea5a47cb 507 SUPERFAMILY SSF47648 97 162 2.35E-11 T 26-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RGE_RS09000 a9e76e7147787d2ed96d52f4acf31e7a 356 SUPERFAMILY SSF111369 165 293 4.05E-9 T 26-04-2016 RGE_RS09000 a9e76e7147787d2ed96d52f4acf31e7a 356 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 59 79 2.8E-5 T 26-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RGE_RS09000 a9e76e7147787d2ed96d52f4acf31e7a 356 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 328 343 2.8E-5 T 26-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RGE_RS09000 a9e76e7147787d2ed96d52f4acf31e7a 356 Pfam PF13533 Biotin-lipoyl like 49 96 7.9E-10 T 26-04-2016 RGE_RS09000 a9e76e7147787d2ed96d52f4acf31e7a 356 PANTHER PTHR30438:SF1 10 356 4.9E-106 T 26-04-2016 RGE_RS09000 a9e76e7147787d2ed96d52f4acf31e7a 356 PANTHER PTHR30438 10 356 4.9E-106 T 26-04-2016 RGE_RS09000 a9e76e7147787d2ed96d52f4acf31e7a 356 Gene3D G3DSA:2.40.50.100 49 81 2.2E-12 T 26-04-2016 RGE_RS09000 a9e76e7147787d2ed96d52f4acf31e7a 356 Gene3D G3DSA:2.40.50.100 212 245 2.2E-12 T 26-04-2016 RGE_RS09000 a9e76e7147787d2ed96d52f4acf31e7a 356 SUPERFAMILY SSF111369 42 123 1.57E-9 T 26-04-2016 RGE_RS09000 a9e76e7147787d2ed96d52f4acf31e7a 356 Pfam PF13437 HlyD family secretion protein 215 320 5.2E-13 T 26-04-2016 RGE_RS06900 72438806a3b102eda2ac096629850591 325 PANTHER PTHR36512 8 325 3.0E-95 T 26-04-2016 RGE_RS06900 72438806a3b102eda2ac096629850591 325 Gene3D G3DSA:3.60.70.12 4 318 3.9E-80 T 26-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RGE_RS06900 72438806a3b102eda2ac096629850591 325 SUPERFAMILY SSF56266 6 323 9.42E-71 T 26-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RGE_RS06900 72438806a3b102eda2ac096629850591 325 Pfam PF03576 Peptidase family S58 9 316 4.7E-62 T 26-04-2016 IPR005321 Peptidase S58, DmpA RGE_RS06900 72438806a3b102eda2ac096629850591 325 PANTHER PTHR36512:SF3 8 325 3.0E-95 T 26-04-2016 RGE_RS15295 6f4d3cee422ab5862783d4afaa6837e9 298 PIRSF PIRSF028477 1 278 1.0E-74 T 26-04-2016 IPR014547 Uncharacterised conserved protein UCP028477 RGE_RS15295 6f4d3cee422ab5862783d4afaa6837e9 298 Pfam PF09916 Uncharacterized protein conserved in bacteria (DUF2145) 49 253 4.8E-63 T 26-04-2016 IPR014547 Uncharacterised conserved protein UCP028477 RGE_RS04125 0985a6005bb75d883a3e4c10d31a79bc 111 Gene3D G3DSA:1.10.760.10 28 96 2.1E-5 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS04125 0985a6005bb75d883a3e4c10d31a79bc 111 SUPERFAMILY SSF46626 7 88 2.51E-8 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS02920 0a72ae3de4e857f99529517a0d0b3e50 269 Gene3D G3DSA:3.40.50.150 9 184 5.2E-18 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS02920 0a72ae3de4e857f99529517a0d0b3e50 269 Pfam PF04072 Leucine carboxyl methyltransferase 20 170 4.3E-8 T 26-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RGE_RS02920 0a72ae3de4e857f99529517a0d0b3e50 269 PANTHER PTHR13600 9 184 3.0E-47 T 26-04-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RGE_RS02920 0a72ae3de4e857f99529517a0d0b3e50 269 SUPERFAMILY SSF53335 10 254 2.39E-47 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS02920 0a72ae3de4e857f99529517a0d0b3e50 269 PANTHER PTHR13600:SF19 9 184 3.0E-47 T 26-04-2016 RGE_RS22260 00f3339bd3ed75e1359c04808542d7a7 366 Pfam PF02653 Branched-chain amino acid transport system / permease component 60 345 9.7E-38 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS22260 00f3339bd3ed75e1359c04808542d7a7 366 PANTHER PTHR32196:SF30 1 344 4.8E-86 T 26-04-2016 RGE_RS22260 00f3339bd3ed75e1359c04808542d7a7 366 PANTHER PTHR32196 1 344 4.8E-86 T 26-04-2016 RGE_RS08805 5bba66aa19dcc85891b8796751898dab 735 PANTHER PTHR24031:SF122 219 369 1.8E-52 T 26-04-2016 RGE_RS08805 5bba66aa19dcc85891b8796751898dab 735 SMART SM00490 279 367 5.6E-11 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS08805 5bba66aa19dcc85891b8796751898dab 735 PANTHER PTHR24031:SF122 10 195 1.8E-52 T 26-04-2016 RGE_RS08805 5bba66aa19dcc85891b8796751898dab 735 PANTHER PTHR24031 10 195 1.8E-52 T 26-04-2016 RGE_RS08805 5bba66aa19dcc85891b8796751898dab 735 PANTHER PTHR24031 219 369 1.8E-52 T 26-04-2016 RGE_RS08805 5bba66aa19dcc85891b8796751898dab 735 Pfam PF00271 Helicase conserved C-terminal domain 264 366 1.4E-13 T 26-04-2016 IPR001650 Helicase, C-terminal RGE_RS08805 5bba66aa19dcc85891b8796751898dab 735 SMART SM00487 22 228 7.7E-28 T 26-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RGE_RS08805 5bba66aa19dcc85891b8796751898dab 735 Pfam PF00270 DEAD/DEAH box helicase 28 196 9.5E-25 T 26-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RGE_RS08805 5bba66aa19dcc85891b8796751898dab 735 SUPERFAMILY SSF52540 244 370 1.35E-40 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08805 5bba66aa19dcc85891b8796751898dab 735 SUPERFAMILY SSF52540 39 198 1.35E-40 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08805 5bba66aa19dcc85891b8796751898dab 735 Gene3D G3DSA:3.40.50.300 11 194 1.4E-32 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08805 5bba66aa19dcc85891b8796751898dab 735 Gene3D G3DSA:3.40.50.300 259 368 2.2E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05810 7de3f39ab9300cefc5f33e05aa47402c 360 PIRSF PIRSF000525 1 360 4.0E-151 T 26-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 RGE_RS05810 7de3f39ab9300cefc5f33e05aa47402c 360 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 187 206 - T 26-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RGE_RS05810 7de3f39ab9300cefc5f33e05aa47402c 360 Gene3D G3DSA:3.90.1150.10 258 358 3.3E-42 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS05810 7de3f39ab9300cefc5f33e05aa47402c 360 Pfam PF00266 Aminotransferase class-V 5 348 5.8E-53 T 26-04-2016 IPR000192 Aminotransferase class V domain RGE_RS05810 7de3f39ab9300cefc5f33e05aa47402c 360 Gene3D G3DSA:3.40.640.10 17 256 7.9E-111 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS05810 7de3f39ab9300cefc5f33e05aa47402c 360 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 5 359 2.6E-157 T 26-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 RGE_RS05810 7de3f39ab9300cefc5f33e05aa47402c 360 PANTHER PTHR21152 1 360 1.4E-187 T 26-04-2016 RGE_RS05810 7de3f39ab9300cefc5f33e05aa47402c 360 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 359 51.102 T 26-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 RGE_RS05810 7de3f39ab9300cefc5f33e05aa47402c 360 SUPERFAMILY SSF53383 1 356 4.02E-118 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS05810 7de3f39ab9300cefc5f33e05aa47402c 360 PANTHER PTHR21152:SF1 1 360 1.4E-187 T 26-04-2016 RGE_RS22140 2f0a8da7a8d6d28c4f7cfe365d1639c5 792 Pfam PF04453 Organic solvent tolerance protein 300 662 1.9E-62 T 26-04-2016 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 RGE_RS22140 2f0a8da7a8d6d28c4f7cfe365d1639c5 792 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 3 761 17.794 T 26-04-2016 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 RGE_RS22140 2f0a8da7a8d6d28c4f7cfe365d1639c5 792 PANTHER PTHR30189 42 791 7.5E-56 T 26-04-2016 RGE_RS22140 2f0a8da7a8d6d28c4f7cfe365d1639c5 792 Gene3D G3DSA:2.60.450.10 54 202 1.4E-8 T 26-04-2016 RGE_RS23175 a1204213d158ea3644da82d8018a16be 400 SUPERFAMILY SSF55073 228 383 2.43E-40 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS23175 a1204213d158ea3644da82d8018a16be 400 PANTHER PTHR10799:SF710 135 380 1.3E-21 T 26-04-2016 RGE_RS23175 a1204213d158ea3644da82d8018a16be 400 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 222 382 1.5E-40 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23175 a1204213d158ea3644da82d8018a16be 400 Gene3D G3DSA:3.30.70.270 225 384 3.7E-46 T 26-04-2016 RGE_RS23175 a1204213d158ea3644da82d8018a16be 400 SMART SM00267 212 385 3.9E-45 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23175 a1204213d158ea3644da82d8018a16be 400 PANTHER PTHR10799 135 380 1.3E-21 T 26-04-2016 RGE_RS23175 a1204213d158ea3644da82d8018a16be 400 Pfam PF00990 Diguanylate cyclase, GGDEF domain 223 380 6.5E-37 T 26-04-2016 IPR000160 GGDEF domain RGE_RS18105 b6ca5ccf45b3871de30cd15f33262d55 389 Gene3D G3DSA:3.90.1150.10 290 383 1.1E-31 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS18105 b6ca5ccf45b3871de30cd15f33262d55 389 Gene3D G3DSA:3.90.1150.10 19 55 1.1E-31 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS18105 b6ca5ccf45b3871de30cd15f33262d55 389 PANTHER PTHR11986 15 389 3.6E-72 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS18105 b6ca5ccf45b3871de30cd15f33262d55 389 Gene3D G3DSA:3.40.640.10 56 286 3.1E-39 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS18105 b6ca5ccf45b3871de30cd15f33262d55 389 SUPERFAMILY SSF53383 13 382 2.04E-77 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS18105 b6ca5ccf45b3871de30cd15f33262d55 389 Pfam PF00202 Aminotransferase class-III 20 124 3.5E-20 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS18105 b6ca5ccf45b3871de30cd15f33262d55 389 Pfam PF00202 Aminotransferase class-III 146 381 1.2E-43 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS02330 a519e5547fd6f4261b996c9abee465b4 406 SUPERFAMILY SSF52266 133 201 2.26E-9 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS02330 a519e5547fd6f4261b996c9abee465b4 406 SUPERFAMILY SSF52266 368 398 2.26E-9 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS02330 a519e5547fd6f4261b996c9abee465b4 406 SUPERFAMILY SSF52266 234 318 2.26E-9 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS02330 a519e5547fd6f4261b996c9abee465b4 406 SUPERFAMILY SSF52266 47 62 2.26E-9 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS02330 a519e5547fd6f4261b996c9abee465b4 406 SUPERFAMILY SSF52266 89 105 2.26E-9 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS02330 a519e5547fd6f4261b996c9abee465b4 406 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 47 391 7.6E-6 T 26-04-2016 IPR001087 GDSL lipase/esterase GO:0016788 RGE_RS02330 a519e5547fd6f4261b996c9abee465b4 406 Gene3D G3DSA:3.40.50.1110 229 402 2.8E-60 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS02330 a519e5547fd6f4261b996c9abee465b4 406 Gene3D G3DSA:3.40.50.1110 38 196 2.8E-60 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS21120 1371bc0283783c159999694adf9634e0 716 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 518 688 7.9E-29 T 26-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS21120 1371bc0283783c159999694adf9634e0 716 Gene3D G3DSA:3.30.450.20 132 263 2.0E-8 T 26-04-2016 RGE_RS21120 1371bc0283783c159999694adf9634e0 716 SUPERFAMILY SSF53098 523 702 3.63E-53 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS21120 1371bc0283783c159999694adf9634e0 716 Pfam PF00929 Exonuclease 528 684 4.6E-34 T 26-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RGE_RS21120 1371bc0283783c159999694adf9634e0 716 Gene3D G3DSA:3.30.420.10 520 697 1.7E-54 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS21120 1371bc0283783c159999694adf9634e0 716 PANTHER PTHR30231 488 708 9.8E-54 T 26-04-2016 RGE_RS21120 1371bc0283783c159999694adf9634e0 716 SMART SM00479 525 693 2.5E-47 T 26-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RGE_RS21120 1371bc0283783c159999694adf9634e0 716 SUPERFAMILY SSF55785 128 252 9.9E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS22680 b563b5538cf795c3567e7a16394dbf78 221 Gene3D G3DSA:2.60.200.20 131 219 5.4E-7 T 26-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RGE_RS22680 b563b5538cf795c3567e7a16394dbf78 221 SUPERFAMILY SSF49879 139 220 2.49E-8 T 26-04-2016 IPR008984 SMAD/FHA domain GO:0005515 RGE_RS22680 b563b5538cf795c3567e7a16394dbf78 221 SMART SM00240 22 72 2.1E-13 T 26-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RGE_RS22680 b563b5538cf795c3567e7a16394dbf78 221 SUPERFAMILY SSF49879 3 94 1.24E-26 T 26-04-2016 IPR008984 SMAD/FHA domain GO:0005515 RGE_RS22680 b563b5538cf795c3567e7a16394dbf78 221 PANTHER PTHR23308 9 86 2.9E-14 T 26-04-2016 RGE_RS22680 b563b5538cf795c3567e7a16394dbf78 221 Gene3D G3DSA:2.60.200.20 4 97 2.5E-25 T 26-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RGE_RS22680 b563b5538cf795c3567e7a16394dbf78 221 Pfam PF00498 FHA domain 24 86 5.8E-17 T 26-04-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 317 3.1E-127 T 26-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 Pfam PF09190 DALR domain 346 401 2.7E-19 T 26-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 456 1.1E-164 T 26-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 Gene3D G3DSA:1.20.120.640 312 391 6.4E-21 T 26-04-2016 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 457 38.357 T 26-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 Gene3D G3DSA:3.40.50.620 20 308 8.8E-105 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 SUPERFAMILY SSF52374 4 316 2.6E-94 T 26-04-2016 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 8.7E-29 T 26-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 8.7E-29 T 26-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 226 247 8.7E-29 T 26-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 195 213 8.7E-29 T 26-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 SUPERFAMILY SSF47323 320 456 7.85E-36 T 26-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 SMART SM00840 346 401 3.5E-23 T 26-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RGE_RS15405 ce9f9ee38e016dab2111ac1d111ba62d 457 PANTHER PTHR10890 1 454 3.9E-227 T 26-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RGE_RS15140 ce2f31a359c1ee6d70b5c4d43e4a472a 101 SUPERFAMILY SSF47336 16 96 3.52E-5 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS15140 ce2f31a359c1ee6d70b5c4d43e4a472a 101 Gene3D G3DSA:1.10.1200.10 17 95 1.8E-6 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS08915 5fb432a698e9044cdd3bb48da6173dd8 250 Pfam PF07277 SapC 14 236 2.9E-59 T 26-04-2016 IPR010836 SapC RGE_RS11505 968ebc9d962e987bb8ef0c826978c6e3 680 Gene3D G3DSA:1.20.1050.40 11 137 8.9E-17 T 26-04-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal RGE_RS11505 968ebc9d962e987bb8ef0c826978c6e3 680 Gene3D G3DSA:3.40.390.10 356 499 3.7E-52 T 26-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RGE_RS11505 968ebc9d962e987bb8ef0c826978c6e3 680 SUPERFAMILY SSF55486 2 670 9.16E-180 T 26-04-2016 RGE_RS11505 968ebc9d962e987bb8ef0c826978c6e3 680 PANTHER PTHR11804:SF8 2 671 8.1E-261 T 26-04-2016 RGE_RS11505 968ebc9d962e987bb8ef0c826978c6e3 680 Pfam PF01432 Peptidase family M3 220 670 3.8E-134 T 26-04-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 RGE_RS11505 968ebc9d962e987bb8ef0c826978c6e3 680 PANTHER PTHR11804 2 671 8.1E-261 T 26-04-2016 RGE_RS11505 968ebc9d962e987bb8ef0c826978c6e3 680 Gene3D G3DSA:1.10.1370.10 140 345 1.3E-128 T 26-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RGE_RS11505 968ebc9d962e987bb8ef0c826978c6e3 680 Gene3D G3DSA:1.10.1370.10 500 673 1.3E-128 T 26-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RGE_RS17595 f9218347142be9bbe078b103b2522b6f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 9.2E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS17595 f9218347142be9bbe078b103b2522b6f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 9.2E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS17595 f9218347142be9bbe078b103b2522b6f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 9.2E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS17595 f9218347142be9bbe078b103b2522b6f 307 Gene3D G3DSA:3.40.190.10 178 258 9.8E-23 T 26-04-2016 RGE_RS17595 f9218347142be9bbe078b103b2522b6f 307 SUPERFAMILY SSF53850 92 296 1.79E-43 T 26-04-2016 RGE_RS17595 f9218347142be9bbe078b103b2522b6f 307 Gene3D G3DSA:3.40.190.10 91 177 1.8E-18 T 26-04-2016 RGE_RS17595 f9218347142be9bbe078b103b2522b6f 307 Pfam PF03466 LysR substrate binding domain 90 293 4.2E-48 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS17595 f9218347142be9bbe078b103b2522b6f 307 SUPERFAMILY SSF46785 3 104 2.39E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS17595 f9218347142be9bbe078b103b2522b6f 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 3.2E-21 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS17595 f9218347142be9bbe078b103b2522b6f 307 PANTHER PTHR30126 3 306 1.2E-90 T 26-04-2016 RGE_RS17595 f9218347142be9bbe078b103b2522b6f 307 PANTHER PTHR30126:SF5 3 306 1.2E-90 T 26-04-2016 RGE_RS17595 f9218347142be9bbe078b103b2522b6f 307 Gene3D G3DSA:1.10.10.10 4 88 2.2E-27 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07105 286c7f425da60b3680b79b895f2fc78a 166 PANTHER PTHR22778:SF16 1 165 1.6E-44 T 26-04-2016 RGE_RS07105 286c7f425da60b3680b79b895f2fc78a 166 PRINTS PR00070 Dihydrofolate reductase signature 29 37 4.4E-15 T 26-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RGE_RS07105 286c7f425da60b3680b79b895f2fc78a 166 PRINTS PR00070 Dihydrofolate reductase signature 15 25 4.4E-15 T 26-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RGE_RS07105 286c7f425da60b3680b79b895f2fc78a 166 PRINTS PR00070 Dihydrofolate reductase signature 42 53 4.4E-15 T 26-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RGE_RS07105 286c7f425da60b3680b79b895f2fc78a 166 PRINTS PR00070 Dihydrofolate reductase signature 96 110 4.4E-15 T 26-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RGE_RS07105 286c7f425da60b3680b79b895f2fc78a 166 PANTHER PTHR22778 1 165 1.6E-44 T 26-04-2016 RGE_RS07105 286c7f425da60b3680b79b895f2fc78a 166 Gene3D G3DSA:3.40.430.10 2 164 5.3E-58 T 26-04-2016 IPR024072 Dihydrofolate reductase-like domain RGE_RS07105 286c7f425da60b3680b79b895f2fc78a 166 Pfam PF00186 Dihydrofolate reductase 4 164 1.7E-55 T 26-04-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RGE_RS07105 286c7f425da60b3680b79b895f2fc78a 166 SUPERFAMILY SSF53597 3 164 8.51E-57 T 26-04-2016 IPR024072 Dihydrofolate reductase-like domain RGE_RS07105 286c7f425da60b3680b79b895f2fc78a 166 PIRSF PIRSF000194 1 166 6.7E-61 T 26-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RGE_RS07105 286c7f425da60b3680b79b895f2fc78a 166 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 15 37 - T 26-04-2016 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RGE_RS16410 530d8d1ee2dac1d0c086b23fe550019e 487 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 151 399 2.0E-29 T 26-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RGE_RS16410 530d8d1ee2dac1d0c086b23fe550019e 487 SUPERFAMILY SSF53807 4 413 3.92E-74 T 26-04-2016 RGE_RS16410 530d8d1ee2dac1d0c086b23fe550019e 487 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 429 479 5.3E-10 T 26-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16410 530d8d1ee2dac1d0c086b23fe550019e 487 TIGRFAM TIGR02014 BchZ: chlorophyllide reductase subunit Z 3 477 3.2E-241 T 26-04-2016 IPR010244 Chlorophyllide reductase subunit Z GO:0016730|GO:0030494|GO:0055114 KEGG: 00860+1.3.99.35|MetaCyc: PWY-5526|UniPathway: UPA00669 RGE_RS16410 530d8d1ee2dac1d0c086b23fe550019e 487 PANTHER PTHR33712:SF7 3 486 8.4E-66 T 26-04-2016 RGE_RS16410 530d8d1ee2dac1d0c086b23fe550019e 487 Gene3D G3DSA:3.40.50.1980 154 253 1.4E-14 T 26-04-2016 RGE_RS16410 530d8d1ee2dac1d0c086b23fe550019e 487 PIRSF PIRSF000163 1 483 3.1E-141 T 26-04-2016 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RGE_RS16410 530d8d1ee2dac1d0c086b23fe550019e 487 Gene3D G3DSA:3.40.50.1980 12 101 6.5E-4 T 26-04-2016 RGE_RS16410 530d8d1ee2dac1d0c086b23fe550019e 487 PANTHER PTHR33712 3 486 8.4E-66 T 26-04-2016 RGE_RS16615 63a8fdb366f254665a92212a782c3618 307 PANTHER PTHR11795 1 306 1.2E-115 T 26-04-2016 RGE_RS16615 63a8fdb366f254665a92212a782c3618 307 PANTHER PTHR11795:SF371 1 306 1.2E-115 T 26-04-2016 RGE_RS16615 63a8fdb366f254665a92212a782c3618 307 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 291 2.0E-46 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS11475 40027ac05177d0c493d011fd12a21eeb 328 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 150 178 - T 26-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RGE_RS11475 40027ac05177d0c493d011fd12a21eeb 328 SUPERFAMILY SSF51735 102 290 5.45E-59 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11475 40027ac05177d0c493d011fd12a21eeb 328 PANTHER PTHR10996 1 328 2.0E-126 T 26-04-2016 RGE_RS11475 40027ac05177d0c493d011fd12a21eeb 328 Gene3D G3DSA:3.40.50.720 117 292 8.3E-63 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11475 40027ac05177d0c493d011fd12a21eeb 328 SUPERFAMILY SSF52283 3 136 4.54E-35 T 26-04-2016 RGE_RS11475 40027ac05177d0c493d011fd12a21eeb 328 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 289 2.1E-59 T 26-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RGE_RS11475 40027ac05177d0c493d011fd12a21eeb 328 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 321 8.9E-29 T 26-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RGE_RS11475 40027ac05177d0c493d011fd12a21eeb 328 Gene3D G3DSA:3.40.50.720 4 116 7.0E-35 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS17515 143c72778209fa6daf7cf276b6c8dbe3 379 PIRSF PIRSF005622 1 374 1.1E-154 T 26-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 RGE_RS17515 143c72778209fa6daf7cf276b6c8dbe3 379 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 371 2.0E-143 T 26-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 RGE_RS17515 143c72778209fa6daf7cf276b6c8dbe3 379 PANTHER PTHR30149:SF0 2 379 2.7E-194 T 26-04-2016 RGE_RS17515 143c72778209fa6daf7cf276b6c8dbe3 379 PANTHER PTHR30149 2 379 2.7E-194 T 26-04-2016 RGE_RS17515 143c72778209fa6daf7cf276b6c8dbe3 379 Pfam PF01924 Hydrogenase formation hypA family 12 369 2.2E-152 T 26-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 RGE_RS12440 f0e09cae3885845dcfcd216dc9622f20 342 PANTHER PTHR32419 10 274 2.4E-68 T 26-04-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 RGE_RS12440 f0e09cae3885845dcfcd216dc9622f20 342 Gene3D G3DSA:1.20.1050.10 158 274 9.7E-13 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS12440 f0e09cae3885845dcfcd216dc9622f20 342 Gene3D G3DSA:3.40.30.10 31 157 4.9E-5 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS12440 f0e09cae3885845dcfcd216dc9622f20 342 PANTHER PTHR32419:SF6 10 274 2.4E-68 T 26-04-2016 RGE_RS12440 f0e09cae3885845dcfcd216dc9622f20 342 SUPERFAMILY SSF47616 151 274 2.68E-18 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS12440 f0e09cae3885845dcfcd216dc9622f20 342 Pfam PF13410 Glutathione S-transferase, C-terminal domain 192 263 1.7E-8 T 26-04-2016 RGE_RS12440 f0e09cae3885845dcfcd216dc9622f20 342 Pfam PF13409 Glutathione S-transferase, N-terminal domain 51 136 7.5E-9 T 26-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RGE_RS18475 3fb25c88bb44e9470759aca74a61965a 162 SMART SM00318 25 146 1.4E-5 T 26-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RGE_RS18475 3fb25c88bb44e9470759aca74a61965a 162 Gene3D G3DSA:2.40.50.90 26 118 3.4E-16 T 26-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RGE_RS18475 3fb25c88bb44e9470759aca74a61965a 162 SUPERFAMILY SSF50199 22 146 6.28E-23 T 26-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RGE_RS18475 3fb25c88bb44e9470759aca74a61965a 162 PANTHER PTHR12302:SF0 27 159 6.5E-12 T 26-04-2016 RGE_RS18475 3fb25c88bb44e9470759aca74a61965a 162 Pfam PF00565 Staphylococcal nuclease homologue 51 142 4.1E-6 T 26-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RGE_RS18475 3fb25c88bb44e9470759aca74a61965a 162 PANTHER PTHR12302 27 159 6.5E-12 T 26-04-2016 RGE_RS05795 fedc090be2c4b462ee8d32d7363ee711 428 PANTHER PTHR19328:SF33 50 425 6.0E-64 T 26-04-2016 RGE_RS05795 fedc090be2c4b462ee8d32d7363ee711 428 Gene3D G3DSA:2.120.10.30 70 426 8.3E-51 T 26-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RGE_RS05795 fedc090be2c4b462ee8d32d7363ee711 428 PANTHER PTHR19328 50 425 6.0E-64 T 26-04-2016 RGE_RS05795 fedc090be2c4b462ee8d32d7363ee711 428 SUPERFAMILY SSF50952 66 426 3.01E-29 T 26-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RGE_RS05795 fedc090be2c4b462ee8d32d7363ee711 428 Pfam PF07995 Glucose / Sorbosone dehydrogenase 184 419 3.5E-14 T 26-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 RGE_RS10150 2770bd3b1d1e93da82009cf4c71a3237 208 PANTHER PTHR30086:SF3 3 208 3.9E-62 T 26-04-2016 RGE_RS10150 2770bd3b1d1e93da82009cf4c71a3237 208 PANTHER PTHR30086 3 208 3.9E-62 T 26-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RGE_RS10150 2770bd3b1d1e93da82009cf4c71a3237 208 PIRSF PIRSF006324 1 208 4.2E-59 T 26-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RGE_RS10150 2770bd3b1d1e93da82009cf4c71a3237 208 Pfam PF01810 LysE type translocator 17 207 3.6E-36 T 26-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RGE_RS05060 9a5df4b8d88e51c589023acf850a16df 292 PANTHER PTHR13779 33 191 2.6E-76 T 26-04-2016 RGE_RS05060 9a5df4b8d88e51c589023acf850a16df 292 PANTHER PTHR13779 219 289 2.6E-76 T 26-04-2016 RGE_RS05060 9a5df4b8d88e51c589023acf850a16df 292 Gene3D G3DSA:3.40.50.300 73 194 1.1E-14 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05060 9a5df4b8d88e51c589023acf850a16df 292 PANTHER PTHR13779:SF28 33 191 2.6E-76 T 26-04-2016 RGE_RS05060 9a5df4b8d88e51c589023acf850a16df 292 PANTHER PTHR13779:SF28 219 289 2.6E-76 T 26-04-2016 RGE_RS05060 9a5df4b8d88e51c589023acf850a16df 292 Pfam PF05673 Protein of unknown function (DUF815) 37 288 7.1E-104 T 26-04-2016 IPR008533 Domain of unknown function DUF815 RGE_RS05060 9a5df4b8d88e51c589023acf850a16df 292 SUPERFAMILY SSF52540 48 196 1.61E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18395 8ca776da6d6a0369272836a1c3d07b81 298 PANTHER PTHR31223:SF1 116 285 9.7E-63 T 26-04-2016 RGE_RS18395 8ca776da6d6a0369272836a1c3d07b81 298 Gene3D G3DSA:3.40.50.450 53 285 2.6E-66 T 26-04-2016 RGE_RS18395 8ca776da6d6a0369272836a1c3d07b81 298 PANTHER PTHR31223 116 285 9.7E-63 T 26-04-2016 RGE_RS18395 8ca776da6d6a0369272836a1c3d07b81 298 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 115 282 4.1E-31 T 26-04-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG RGE_RS18395 8ca776da6d6a0369272836a1c3d07b81 298 SUPERFAMILY SSF102405 117 281 1.83E-55 T 26-04-2016 RGE_RS18395 8ca776da6d6a0369272836a1c3d07b81 298 SUPERFAMILY SSF102405 41 88 1.83E-55 T 26-04-2016 RGE_RS18395 8ca776da6d6a0369272836a1c3d07b81 298 Pfam PF03641 Possible lysine decarboxylase 151 280 3.3E-34 T 26-04-2016 IPR031100 LOG family RGE_RS00905 5a55f9762520fc431e1baa603af4f2a4 450 PANTHER PTHR16263 24 436 4.8E-84 T 26-04-2016 RGE_RS00905 5a55f9762520fc431e1baa603af4f2a4 450 SUPERFAMILY SSF48452 94 219 2.98E-6 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00905 5a55f9762520fc431e1baa603af4f2a4 450 Gene3D G3DSA:1.25.40.10 158 219 5.4E-5 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00905 5a55f9762520fc431e1baa603af4f2a4 450 Gene3D G3DSA:1.25.40.10 99 119 5.4E-5 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00065 9aaff401a4c960248d3a617d660d35ec 469 PANTHER PTHR30203:SF3 60 468 1.6E-92 T 26-04-2016 RGE_RS00065 9aaff401a4c960248d3a617d660d35ec 469 PANTHER PTHR30203 60 468 1.6E-92 T 26-04-2016 RGE_RS00065 9aaff401a4c960248d3a617d660d35ec 469 Pfam PF02321 Outer membrane efflux protein 280 458 7.5E-25 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS00065 9aaff401a4c960248d3a617d660d35ec 469 Pfam PF02321 Outer membrane efflux protein 69 253 1.4E-26 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS00065 9aaff401a4c960248d3a617d660d35ec 469 Gene3D G3DSA:1.20.1600.10 50 467 1.3E-109 T 26-04-2016 RGE_RS00065 9aaff401a4c960248d3a617d660d35ec 469 SUPERFAMILY SSF56954 2 30 5.75E-104 T 26-04-2016 RGE_RS00065 9aaff401a4c960248d3a617d660d35ec 469 SUPERFAMILY SSF56954 60 467 5.75E-104 T 26-04-2016 RGE_RS00065 9aaff401a4c960248d3a617d660d35ec 469 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 10 465 1.1E-109 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS19670 e859aea7f167528669134608d2232b11 169 TIGRFAM TIGR03126 one_C_fae: formaldehyde-activating enzyme 8 166 4.2E-76 T 26-04-2016 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|UniPathway: UPA00293 RGE_RS19670 e859aea7f167528669134608d2232b11 169 Gene3D G3DSA:3.30.230.60 4 167 4.1E-80 T 26-04-2016 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|UniPathway: UPA00293 RGE_RS19670 e859aea7f167528669134608d2232b11 169 SUPERFAMILY SSF54211 4 167 3.49E-68 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS19670 e859aea7f167528669134608d2232b11 169 PANTHER PTHR35039 21 165 1.0E-29 T 26-04-2016 RGE_RS19670 e859aea7f167528669134608d2232b11 169 PANTHER PTHR35039:SF1 21 165 1.0E-29 T 26-04-2016 RGE_RS19670 e859aea7f167528669134608d2232b11 169 Pfam PF08714 Formaldehyde-activating enzyme (Fae) 9 166 8.8E-71 T 26-04-2016 IPR014826 Formaldehyde-activating enzyme GO:0016051|GO:0016840 KEGG: 00030+4.1.2.43|KEGG: 00680+4.2.1.147+4.1.2.43|MetaCyc: PWY-1723|MetaCyc: PWY-1861|UniPathway: UPA00293 RGE_RS14085 c526986a36e1ffdb9f6ffa107ccceb9d 306 PANTHER PTHR34308 1 306 4.3E-80 T 26-04-2016 RGE_RS14085 c526986a36e1ffdb9f6ffa107ccceb9d 306 Pfam PF03186 CobD/Cbib protein 11 267 9.4E-84 T 26-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 RGE_RS14085 c526986a36e1ffdb9f6ffa107ccceb9d 306 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 306 82.504 T 26-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 RGE_RS14085 c526986a36e1ffdb9f6ffa107ccceb9d 306 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 10 277 6.4E-61 T 26-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 RGE_RS14085 c526986a36e1ffdb9f6ffa107ccceb9d 306 PANTHER PTHR34308:SF1 1 306 4.3E-80 T 26-04-2016 RGE_RS08455 931cd54d78a2a67c17560ee0e170a937 239 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 103 237 8.0E-29 T 26-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RGE_RS08455 931cd54d78a2a67c17560ee0e170a937 239 Pfam PF13144 Chaperone for flagella basal body P-ring formation 53 237 1.3E-38 T 26-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RGE_RS08455 931cd54d78a2a67c17560ee0e170a937 239 SMART SM00858 115 177 1.1E-7 T 26-04-2016 IPR013974 SAF domain RGE_RS08455 931cd54d78a2a67c17560ee0e170a937 239 PANTHER PTHR36307 25 237 1.6E-18 T 26-04-2016 RGE_RS11630 356bc7d49261846915cf03642bcefa02 160 PANTHER PTHR39165 1 160 2.9E-31 T 26-04-2016 RGE_RS11630 356bc7d49261846915cf03642bcefa02 160 PANTHER PTHR39165:SF1 1 160 2.9E-31 T 26-04-2016 RGE_RS11630 356bc7d49261846915cf03642bcefa02 160 Pfam PF04306 Protein of unknown function (DUF456) 22 157 5.0E-34 T 26-04-2016 IPR007403 Protein of unknown function DUF456 RGE_RS09240 5ec04b7dec9206dc5c2b45352738e543 484 Gene3D G3DSA:1.20.1600.10 61 97 5.3E-83 T 26-04-2016 RGE_RS09240 5ec04b7dec9206dc5c2b45352738e543 484 Gene3D G3DSA:1.20.1600.10 358 472 5.3E-83 T 26-04-2016 RGE_RS09240 5ec04b7dec9206dc5c2b45352738e543 484 Gene3D G3DSA:1.20.1600.10 147 320 5.3E-83 T 26-04-2016 RGE_RS09240 5ec04b7dec9206dc5c2b45352738e543 484 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 22 471 7.3E-97 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS09240 5ec04b7dec9206dc5c2b45352738e543 484 Pfam PF02321 Outer membrane efflux protein 71 253 9.8E-24 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS09240 5ec04b7dec9206dc5c2b45352738e543 484 Pfam PF02321 Outer membrane efflux protein 288 469 6.4E-16 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS09240 5ec04b7dec9206dc5c2b45352738e543 484 PANTHER PTHR30203:SF3 4 483 3.8E-93 T 26-04-2016 RGE_RS09240 5ec04b7dec9206dc5c2b45352738e543 484 PANTHER PTHR30203 4 483 3.8E-93 T 26-04-2016 RGE_RS09240 5ec04b7dec9206dc5c2b45352738e543 484 SUPERFAMILY SSF56954 6 473 2.62E-89 T 26-04-2016 RGE_RS09240 5ec04b7dec9206dc5c2b45352738e543 484 Gene3D G3DSA:2.20.200.10 108 146 2.7E-10 T 26-04-2016 RGE_RS09240 5ec04b7dec9206dc5c2b45352738e543 484 Gene3D G3DSA:2.20.200.10 321 349 2.7E-10 T 26-04-2016 RGE_RS10505 7c5d06247fc2023a58ec52de753e3bac 430 Gene3D G3DSA:3.30.565.10 268 286 7.1E-12 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10505 7c5d06247fc2023a58ec52de753e3bac 430 Gene3D G3DSA:3.30.565.10 324 428 7.1E-12 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10505 7c5d06247fc2023a58ec52de753e3bac 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 382 6.2E-7 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10505 7c5d06247fc2023a58ec52de753e3bac 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 424 6.2E-7 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10505 7c5d06247fc2023a58ec52de753e3bac 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 402 6.2E-7 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS10505 7c5d06247fc2023a58ec52de753e3bac 430 SUPERFAMILY SSF55874 299 425 3.7E-16 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10505 7c5d06247fc2023a58ec52de753e3bac 430 Pfam PF06580 Histidine kinase 235 313 2.2E-15 T 26-04-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 RGE_RS10505 7c5d06247fc2023a58ec52de753e3bac 430 SMART SM00387 330 427 4.4E-5 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS10505 7c5d06247fc2023a58ec52de753e3bac 430 PANTHER PTHR34220 218 430 3.4E-43 T 26-04-2016 RGE_RS18300 223f724e3335cf746b1509514afaf527 122 SUPERFAMILY SSF52172 3 120 1.71E-33 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS18300 223f724e3335cf746b1509514afaf527 122 SMART SM00448 3 116 7.8E-34 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS18300 223f724e3335cf746b1509514afaf527 122 PANTHER PTHR26402:SF586 3 120 4.5E-36 T 26-04-2016 RGE_RS18300 223f724e3335cf746b1509514afaf527 122 Gene3D G3DSA:3.40.50.2300 3 120 7.6E-34 T 26-04-2016 RGE_RS18300 223f724e3335cf746b1509514afaf527 122 PANTHER PTHR26402 3 120 4.5E-36 T 26-04-2016 RGE_RS18300 223f724e3335cf746b1509514afaf527 122 Pfam PF00072 Response regulator receiver domain 5 116 1.6E-23 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 Gene3D G3DSA:1.10.3210.10 168 243 2.0E-19 T 26-04-2016 IPR006674 HD domain RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 Gene3D G3DSA:1.10.3210.10 281 364 2.0E-19 T 26-04-2016 IPR006674 HD domain RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 Gene3D G3DSA:3.40.50.2300 6 128 1.0E-40 T 26-04-2016 RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 SMART SM00448 6 120 9.1E-40 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 PANTHER PTHR26402 6 138 3.5E-51 T 26-04-2016 RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 SUPERFAMILY SSF52172 5 133 2.85E-39 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 PANTHER PTHR26402 287 324 3.5E-51 T 26-04-2016 RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 SUPERFAMILY SSF109604 287 362 7.22E-34 T 26-04-2016 RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 SUPERFAMILY SSF109604 151 249 7.22E-34 T 26-04-2016 RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 PANTHER PTHR26402:SF495 287 324 3.5E-51 T 26-04-2016 RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 SMART SM00471 166 331 1.8E-7 T 26-04-2016 IPR003607 HD/PDEase domain RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 PANTHER PTHR26402:SF495 6 138 3.5E-51 T 26-04-2016 RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 Pfam PF01966 HD domain 171 321 8.5E-17 T 26-04-2016 IPR006674 HD domain RGE_RS07120 1e4084b08fa10d137d7665fcfcfde762 386 Pfam PF00072 Response regulator receiver domain 8 120 6.9E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS05065 03318fb91fafaa5621f0736eb1f8703b 145 PANTHER PTHR22769 10 113 8.9E-21 T 26-04-2016 RGE_RS05065 03318fb91fafaa5621f0736eb1f8703b 145 PRINTS PR00502 NUDIX hydrolase family signature 39 53 1.2E-9 T 26-04-2016 IPR020476 NUDIX hydrolase RGE_RS05065 03318fb91fafaa5621f0736eb1f8703b 145 PRINTS PR00502 NUDIX hydrolase family signature 53 68 1.2E-9 T 26-04-2016 IPR020476 NUDIX hydrolase RGE_RS05065 03318fb91fafaa5621f0736eb1f8703b 145 SUPERFAMILY SSF55811 8 113 4.6E-30 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS05065 03318fb91fafaa5621f0736eb1f8703b 145 ProSitePatterns PS00893 Nudix box signature. 44 65 - T 26-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RGE_RS05065 03318fb91fafaa5621f0736eb1f8703b 145 Gene3D G3DSA:3.90.79.10 9 134 2.3E-29 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS05065 03318fb91fafaa5621f0736eb1f8703b 145 Pfam PF00293 NUDIX domain 12 118 5.1E-17 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS05065 03318fb91fafaa5621f0736eb1f8703b 145 PANTHER PTHR22769:SF35 10 113 8.9E-21 T 26-04-2016 RGE_RS09055 788e022f807108cfe0ba1e6a5d9d5bc1 373 Gene3D G3DSA:1.10.3210.10 139 256 1.1E-6 T 26-04-2016 IPR006674 HD domain RGE_RS09055 788e022f807108cfe0ba1e6a5d9d5bc1 373 Pfam PF13487 HD domain 188 238 1.1E-7 T 26-04-2016 RGE_RS09055 788e022f807108cfe0ba1e6a5d9d5bc1 373 SUPERFAMILY SSF109604 139 270 2.77E-13 T 26-04-2016 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 Gene3D G3DSA:1.10.730.10 445 556 4.6E-42 T 26-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 SUPERFAMILY SSF47323 435 556 6.34E-34 T 26-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 PRINTS PR01038 Arginyl-tRNA synthetase signature 159 172 3.2E-22 T 26-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 PRINTS PR01038 Arginyl-tRNA synthetase signature 307 328 3.2E-22 T 26-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 PRINTS PR01038 Arginyl-tRNA synthetase signature 135 151 3.2E-22 T 26-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 PRINTS PR01038 Arginyl-tRNA synthetase signature 120 135 3.2E-22 T 26-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 PANTHER PTHR11956 1 556 2.3E-204 T 26-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 130 139 - T 26-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 PANTHER PTHR11956:SF6 1 556 2.3E-204 T 26-04-2016 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 SUPERFAMILY SSF55190 3 112 9.94E-20 T 26-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 6 556 5.9E-119 T 26-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 SMART SM01016 6 92 4.6E-28 T 26-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 92 8.1E-20 T 26-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 Hamap MF_00123 Arginine--tRNA ligase [argS]. 2 556 24.178 T 26-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 Gene3D G3DSA:3.30.1360.70 2 109 1.0E-27 T 26-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 SMART SM00836 440 556 6.7E-50 T 26-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 Gene3D G3DSA:3.40.50.620 114 444 2.9E-108 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 SUPERFAMILY SSF52374 114 450 2.09E-85 T 26-04-2016 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 Pfam PF00750 tRNA synthetases class I (R) 104 409 2.2E-24 T 26-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RGE_RS22440 952d80c1d1f9356f9191ad38660ba67c 566 Pfam PF05746 DALR anticodon binding domain 440 556 1.6E-32 T 26-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RGE_RS17770 2c86ef246a023da34ce34e8f00b7a859 122 SUPERFAMILY SSF47598 1 40 8.0E-7 T 26-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RGE_RS17770 2c86ef246a023da34ce34e8f00b7a859 122 Gene3D G3DSA:1.10.1220.10 11 38 9.3E-4 T 26-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RGE_RS22420 2401dac148e5a16586013ff789ed8484 304 SUPERFAMILY SSF46785 2 111 1.25E-18 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22420 2401dac148e5a16586013ff789ed8484 304 Gene3D G3DSA:3.40.190.10 92 177 3.0E-27 T 26-04-2016 RGE_RS22420 2401dac148e5a16586013ff789ed8484 304 Pfam PF03466 LysR substrate binding domain 90 291 1.9E-47 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS22420 2401dac148e5a16586013ff789ed8484 304 PANTHER PTHR30537 1 302 5.2E-112 T 26-04-2016 RGE_RS22420 2401dac148e5a16586013ff789ed8484 304 Gene3D G3DSA:1.10.10.10 3 84 1.2E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22420 2401dac148e5a16586013ff789ed8484 304 SUPERFAMILY SSF53850 91 296 3.26E-49 T 26-04-2016 RGE_RS22420 2401dac148e5a16586013ff789ed8484 304 PANTHER PTHR30537:SF5 1 302 5.2E-112 T 26-04-2016 RGE_RS22420 2401dac148e5a16586013ff789ed8484 304 Gene3D G3DSA:3.40.190.10 178 259 1.8E-6 T 26-04-2016 RGE_RS22420 2401dac148e5a16586013ff789ed8484 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.4E-16 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS08980 b475f0c251df6d4e7a6542c4a4abfdcd 373 PANTHER PTHR34069 90 371 4.7E-152 T 26-04-2016 RGE_RS08980 b475f0c251df6d4e7a6542c4a4abfdcd 373 PANTHER PTHR34069 1 25 4.7E-152 T 26-04-2016 RGE_RS08980 b475f0c251df6d4e7a6542c4a4abfdcd 373 PANTHER PTHR34069 50 70 4.7E-152 T 26-04-2016 RGE_RS08980 b475f0c251df6d4e7a6542c4a4abfdcd 373 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 282 371 3.7E-20 T 26-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RGE_RS08980 b475f0c251df6d4e7a6542c4a4abfdcd 373 Gene3D G3DSA:3.40.47.10 3 204 4.1E-47 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS08980 b475f0c251df6d4e7a6542c4a4abfdcd 373 PANTHER PTHR34069:SF1 90 371 4.7E-152 T 26-04-2016 RGE_RS08980 b475f0c251df6d4e7a6542c4a4abfdcd 373 PANTHER PTHR34069:SF1 1 25 4.7E-152 T 26-04-2016 RGE_RS08980 b475f0c251df6d4e7a6542c4a4abfdcd 373 PANTHER PTHR34069:SF1 50 70 4.7E-152 T 26-04-2016 RGE_RS08980 b475f0c251df6d4e7a6542c4a4abfdcd 373 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 150 228 1.3E-19 T 26-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RGE_RS08980 b475f0c251df6d4e7a6542c4a4abfdcd 373 SUPERFAMILY SSF53901 3 372 6.25E-48 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS08980 b475f0c251df6d4e7a6542c4a4abfdcd 373 Gene3D G3DSA:3.40.47.10 205 371 1.1E-25 T 26-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RGE_RS15985 4cfd2de5aafb2c509885dc68a987f655 140 Pfam PF09722 Protein of unknown function (DUF2384) 84 137 1.4E-9 T 26-04-2016 IPR024467 Domain of unknown function DUF2384 RGE_RS15985 4cfd2de5aafb2c509885dc68a987f655 140 ProDom PD080812 PLASMID Y4OB BMEII097 AGR_L_107P MLL2216 BMEII0977 ATU4831 35 133 9.0E-37 T 26-04-2016 IPR020358 Uncharacterised protein family Y4oB RGE_RS23080 3f109688ea1ab74046bde3d3f07cc8cd 309 Pfam PF11927 Protein of unknown function (DUF3445) 56 266 5.9E-16 T 26-04-2016 IPR021848 Protein of unknown function DUF3445 RGE_RS07000 e1f9956f6b5e1bdb96a2cd714d1a036f 210 Pfam PF00849 RNA pseudouridylate synthase 14 160 1.5E-25 T 26-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS07000 e1f9956f6b5e1bdb96a2cd714d1a036f 210 SUPERFAMILY SSF55120 5 207 7.36E-57 T 26-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS07000 e1f9956f6b5e1bdb96a2cd714d1a036f 210 PANTHER PTHR11079:SF86 7 205 7.1E-55 T 26-04-2016 RGE_RS07000 e1f9956f6b5e1bdb96a2cd714d1a036f 210 PANTHER PTHR11079 7 205 7.1E-55 T 26-04-2016 RGE_RS06290 3f75ab247dbb9e4ae2c0180c79f9efe3 332 Pfam PF00583 Acetyltransferase (GNAT) family 62 138 3.8E-11 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS06290 3f75ab247dbb9e4ae2c0180c79f9efe3 332 SUPERFAMILY SSF55729 168 315 9.72E-31 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06290 3f75ab247dbb9e4ae2c0180c79f9efe3 332 Gene3D G3DSA:3.40.630.30 164 329 2.1E-37 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06290 3f75ab247dbb9e4ae2c0180c79f9efe3 332 PANTHER PTHR13256:SF10 148 323 1.4E-27 T 26-04-2016 RGE_RS06290 3f75ab247dbb9e4ae2c0180c79f9efe3 332 PANTHER PTHR13256 148 323 1.4E-27 T 26-04-2016 RGE_RS06290 3f75ab247dbb9e4ae2c0180c79f9efe3 332 Gene3D G3DSA:3.40.630.30 2 160 3.4E-24 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06290 3f75ab247dbb9e4ae2c0180c79f9efe3 332 SUPERFAMILY SSF55729 5 145 2.27E-23 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06290 3f75ab247dbb9e4ae2c0180c79f9efe3 332 Pfam PF13302 Acetyltransferase (GNAT) domain 173 311 2.0E-25 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS23185 23a220e64e8e5918d4083d0e1cd5a115 687 SUPERFAMILY SSF55073 243 414 9.42E-34 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS23185 23a220e64e8e5918d4083d0e1cd5a115 687 Pfam PF00990 Diguanylate cyclase, GGDEF domain 237 406 6.0E-30 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23185 23a220e64e8e5918d4083d0e1cd5a115 687 PANTHER PTHR33121 374 680 7.8E-78 T 26-04-2016 RGE_RS23185 23a220e64e8e5918d4083d0e1cd5a115 687 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 236 409 6.6E-26 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23185 23a220e64e8e5918d4083d0e1cd5a115 687 Pfam PF00563 EAL domain 429 663 3.5E-74 T 26-04-2016 IPR001633 EAL domain RGE_RS23185 23a220e64e8e5918d4083d0e1cd5a115 687 SMART SM00267 226 412 3.7E-35 T 26-04-2016 IPR000160 GGDEF domain RGE_RS23185 23a220e64e8e5918d4083d0e1cd5a115 687 SMART SM00052 422 668 1.6E-116 T 26-04-2016 IPR001633 EAL domain RGE_RS23185 23a220e64e8e5918d4083d0e1cd5a115 687 SUPERFAMILY SSF141868 427 675 2.35E-89 T 26-04-2016 IPR001633 EAL domain RGE_RS23185 23a220e64e8e5918d4083d0e1cd5a115 687 PANTHER PTHR33121:SF13 374 680 7.8E-78 T 26-04-2016 RGE_RS23185 23a220e64e8e5918d4083d0e1cd5a115 687 Gene3D G3DSA:3.20.20.450 426 675 8.0E-99 T 26-04-2016 IPR001633 EAL domain RGE_RS23185 23a220e64e8e5918d4083d0e1cd5a115 687 Gene3D G3DSA:3.30.70.270 239 418 5.8E-41 T 26-04-2016 RGE_RS04640 eb466bf9536b94c5049061a84168ea60 147 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 6 128 6.5E-31 T 26-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RGE_RS04640 eb466bf9536b94c5049061a84168ea60 147 Pfam PF02381 MraZ protein, putative antitoxin-like 79 130 5.6E-14 T 26-04-2016 IPR020603 MraZ domain RGE_RS04640 eb466bf9536b94c5049061a84168ea60 147 Pfam PF02381 MraZ protein, putative antitoxin-like 6 67 1.4E-9 T 26-04-2016 IPR020603 MraZ domain RGE_RS04640 eb466bf9536b94c5049061a84168ea60 147 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 6 130 3.0E-33 T 26-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RGE_RS04640 eb466bf9536b94c5049061a84168ea60 147 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 147 41.043 T 26-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RGE_RS04640 eb466bf9536b94c5049061a84168ea60 147 PANTHER PTHR34701 6 136 3.8E-43 T 26-04-2016 RGE_RS04640 eb466bf9536b94c5049061a84168ea60 147 SUPERFAMILY SSF89447 4 130 5.02E-38 T 26-04-2016 RGE_RS08210 5b02dcd0d37009232657e6023244df74 253 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 16 252 4.2E-59 T 26-04-2016 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 RGE_RS08210 5b02dcd0d37009232657e6023244df74 253 Pfam PF01311 Bacterial export proteins, family 1 16 246 4.8E-66 T 26-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RGE_RS08210 5b02dcd0d37009232657e6023244df74 253 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 2.7E-28 T 26-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RGE_RS08210 5b02dcd0d37009232657e6023244df74 253 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 2.7E-28 T 26-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RGE_RS08210 5b02dcd0d37009232657e6023244df74 253 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 2.7E-28 T 26-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RGE_RS08210 5b02dcd0d37009232657e6023244df74 253 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 2.7E-28 T 26-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RGE_RS08210 5b02dcd0d37009232657e6023244df74 253 PANTHER PTHR30065 2 253 9.8E-66 T 26-04-2016 RGE_RS08210 5b02dcd0d37009232657e6023244df74 253 PANTHER PTHR30065:SF1 2 253 9.8E-66 T 26-04-2016 RGE_RS09080 e26cc9a27ab93d5f645bf1316884a4b7 184 PANTHER PTHR26402 66 181 1.4E-14 T 26-04-2016 RGE_RS09080 e26cc9a27ab93d5f645bf1316884a4b7 184 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 5 50 2.8E-15 T 26-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 RGE_RS09080 e26cc9a27ab93d5f645bf1316884a4b7 184 PANTHER PTHR26402:SF413 66 181 1.4E-14 T 26-04-2016 RGE_RS09080 e26cc9a27ab93d5f645bf1316884a4b7 184 Pfam PF12728 Helix-turn-helix domain 7 56 6.4E-13 T 26-04-2016 RGE_RS09080 e26cc9a27ab93d5f645bf1316884a4b7 184 SMART SM00448 66 181 8.6E-9 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS09080 e26cc9a27ab93d5f645bf1316884a4b7 184 SUPERFAMILY SSF46955 5 59 1.71E-12 T 26-04-2016 IPR009061 Putative DNA-binding domain RGE_RS09080 e26cc9a27ab93d5f645bf1316884a4b7 184 SUPERFAMILY SSF52172 67 181 2.56E-19 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS09080 e26cc9a27ab93d5f645bf1316884a4b7 184 Gene3D G3DSA:3.40.50.2300 67 181 5.9E-19 T 26-04-2016 RGE_RS09080 e26cc9a27ab93d5f645bf1316884a4b7 184 Pfam PF00072 Response regulator receiver domain 68 181 5.3E-15 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS09080 e26cc9a27ab93d5f645bf1316884a4b7 184 Gene3D G3DSA:1.10.10.10 6 60 6.4E-7 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS07025 f12fe36eeb5ac0e381f5cbdf1a9aa473 150 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 3 146 4.9E-58 T 26-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RGE_RS07025 f12fe36eeb5ac0e381f5cbdf1a9aa473 150 Gene3D G3DSA:3.40.50.9100 2 147 2.6E-64 T 26-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RGE_RS07025 f12fe36eeb5ac0e381f5cbdf1a9aa473 150 PANTHER PTHR21272 1 150 6.9E-84 T 26-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RGE_RS07025 f12fe36eeb5ac0e381f5cbdf1a9aa473 150 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 18 145 6.0E-46 T 26-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RGE_RS07025 f12fe36eeb5ac0e381f5cbdf1a9aa473 150 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 150 69.724 T 26-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RGE_RS07025 f12fe36eeb5ac0e381f5cbdf1a9aa473 150 PIRSF PIRSF001399 1 150 1.7E-60 T 26-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RGE_RS07025 f12fe36eeb5ac0e381f5cbdf1a9aa473 150 SUPERFAMILY SSF52304 3 147 1.7E-58 T 26-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RGE_RS07025 f12fe36eeb5ac0e381f5cbdf1a9aa473 150 Pfam PF01220 Dehydroquinase class II 3 144 1.7E-59 T 26-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RGE_RS07025 f12fe36eeb5ac0e381f5cbdf1a9aa473 150 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 26-04-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 PRINTS PR00395 Ribosomal protein S2 signature 5 23 1.6E-35 T 26-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 PRINTS PR00395 Ribosomal protein S2 signature 156 173 1.6E-35 T 26-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 PRINTS PR00395 Ribosomal protein S2 signature 86 103 1.6E-35 T 26-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 PRINTS PR00395 Ribosomal protein S2 signature 194 208 1.6E-35 T 26-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 PRINTS PR00395 Ribosomal protein S2 signature 173 184 1.6E-35 T 26-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 PRINTS PR00395 Ribosomal protein S2 signature 36 45 1.6E-35 T 26-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 PANTHER PTHR12534 3 224 6.1E-104 T 26-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 2 224 1.0E-93 T 26-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 Pfam PF00318 Ribosomal protein S2 8 222 3.4E-89 T 26-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 SUPERFAMILY SSF52313 5 228 3.01E-87 T 26-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 5 16 - T 26-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 1 223 39.115 T 26-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 Gene3D G3DSA:3.40.50.10490 22 98 6.1E-61 T 26-04-2016 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 Gene3D G3DSA:3.40.50.10490 156 240 6.1E-61 T 26-04-2016 RGE_RS13315 d675742c3e53e3a4a261291f9cff512f 247 Gene3D G3DSA:1.10.287.610 99 150 2.2E-18 T 26-04-2016 RGE_RS07435 9810f8ed56a07a6026ed18a17efee6ad 271 Pfam PF12697 Alpha/beta hydrolase family 8 260 8.6E-11 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS07435 9810f8ed56a07a6026ed18a17efee6ad 271 PANTHER PTHR10992 7 267 2.3E-18 T 26-04-2016 RGE_RS07435 9810f8ed56a07a6026ed18a17efee6ad 271 Gene3D G3DSA:3.40.50.1820 5 265 8.4E-28 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07435 9810f8ed56a07a6026ed18a17efee6ad 271 SUPERFAMILY SSF53474 6 263 6.81E-30 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS08120 c6d0a1717ac5f6d7302e3c2bae2fb330 252 Pfam PF00072 Response regulator receiver domain 15 124 2.2E-30 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08120 c6d0a1717ac5f6d7302e3c2bae2fb330 252 Pfam PF00486 Transcriptional regulatory protein, C terminal 169 244 7.5E-21 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS08120 c6d0a1717ac5f6d7302e3c2bae2fb330 252 PANTHER PTHR26402:SF292 13 248 9.2E-84 T 26-04-2016 RGE_RS08120 c6d0a1717ac5f6d7302e3c2bae2fb330 252 SUPERFAMILY SSF46894 147 246 2.69E-23 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS08120 c6d0a1717ac5f6d7302e3c2bae2fb330 252 PANTHER PTHR26402 13 248 9.2E-84 T 26-04-2016 RGE_RS08120 c6d0a1717ac5f6d7302e3c2bae2fb330 252 SMART SM00862 168 244 1.1E-20 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS08120 c6d0a1717ac5f6d7302e3c2bae2fb330 252 SMART SM00448 13 123 1.9E-41 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08120 c6d0a1717ac5f6d7302e3c2bae2fb330 252 Gene3D G3DSA:3.40.50.2300 13 135 3.7E-41 T 26-04-2016 RGE_RS08120 c6d0a1717ac5f6d7302e3c2bae2fb330 252 Gene3D G3DSA:1.10.10.10 144 247 1.7E-28 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS08120 c6d0a1717ac5f6d7302e3c2bae2fb330 252 SUPERFAMILY SSF52172 13 135 1.99E-40 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS03850 bf9ad3e84df8143ac95fd3814395bdf3 353 Pfam PF01594 Domain of unknown function DUF20 11 343 4.6E-40 T 26-04-2016 IPR002549 Transmembrane protein TqsA-like RGE_RS03850 bf9ad3e84df8143ac95fd3814395bdf3 353 PANTHER PTHR21716 11 346 4.3E-97 T 26-04-2016 IPR002549 Transmembrane protein TqsA-like RGE_RS03850 bf9ad3e84df8143ac95fd3814395bdf3 353 PANTHER PTHR21716:SF20 11 346 4.3E-97 T 26-04-2016 RGE_RS09420 e0164dee81533aea856dab9ec3b2fd25 246 PANTHER PTHR30294 12 246 7.9E-18 T 26-04-2016 RGE_RS09420 e0164dee81533aea856dab9ec3b2fd25 246 Pfam PF01061 ABC-2 type transporter 10 208 1.1E-9 T 26-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RGE_RS06840 51e364fbdbc1906faaac71a04ffe1961 234 PANTHER PTHR10108 4 231 1.4E-114 T 26-04-2016 RGE_RS06840 51e364fbdbc1906faaac71a04ffe1961 234 Gene3D G3DSA:3.40.50.150 20 217 2.5E-50 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS06840 51e364fbdbc1906faaac71a04ffe1961 234 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 7 233 39.012 T 26-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 RGE_RS06840 51e364fbdbc1906faaac71a04ffe1961 234 Pfam PF13489 Methyltransferase domain 47 200 1.7E-26 T 26-04-2016 RGE_RS06840 51e364fbdbc1906faaac71a04ffe1961 234 SUPERFAMILY SSF53335 13 213 6.66E-49 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS06840 51e364fbdbc1906faaac71a04ffe1961 234 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 9 227 3.4E-84 T 26-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 RGE_RS06840 51e364fbdbc1906faaac71a04ffe1961 234 PANTHER PTHR10108:SF910 4 231 1.4E-114 T 26-04-2016 RGE_RS10570 1d27e1ed57f2957286cd714ba24a533b 165 TIGRFAM TIGR04274 hypoxanDNAglyco: DNA-deoxyinosine glycosylase 7 155 1.6E-46 T 26-04-2016 IPR026353 Hypoxanthine-DNA glycosylase RGE_RS10570 1d27e1ed57f2957286cd714ba24a533b 165 SUPERFAMILY SSF52141 8 159 1.16E-36 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS10570 1d27e1ed57f2957286cd714ba24a533b 165 SMART SM00987 9 159 3.3E-8 T 26-04-2016 RGE_RS10570 1d27e1ed57f2957286cd714ba24a533b 165 Pfam PF03167 Uracil DNA glycosylase superfamily 13 157 1.9E-8 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS10570 1d27e1ed57f2957286cd714ba24a533b 165 Gene3D G3DSA:3.40.470.10 8 158 3.3E-34 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS10570 1d27e1ed57f2957286cd714ba24a533b 165 SMART SM00986 9 159 3.3E-8 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS04875 3f4c5d58fe586ba8c8b1e4f26d0e3dbc 686 Gene3D G3DSA:3.40.50.300 10 204 5.2E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04875 3f4c5d58fe586ba8c8b1e4f26d0e3dbc 686 SUPERFAMILY SSF53659 365 683 3.17E-92 T 26-04-2016 RGE_RS04875 3f4c5d58fe586ba8c8b1e4f26d0e3dbc 686 PANTHER PTHR23406 148 684 2.1E-53 T 26-04-2016 RGE_RS04875 3f4c5d58fe586ba8c8b1e4f26d0e3dbc 686 Pfam PF01515 Phosphate acetyl/butaryl transferase 365 680 4.1E-123 T 26-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RGE_RS04875 3f4c5d58fe586ba8c8b1e4f26d0e3dbc 686 Gene3D G3DSA:3.40.50.10750 497 656 4.2E-67 T 26-04-2016 RGE_RS04875 3f4c5d58fe586ba8c8b1e4f26d0e3dbc 686 SUPERFAMILY SSF75138 205 327 3.73E-19 T 26-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like RGE_RS04875 3f4c5d58fe586ba8c8b1e4f26d0e3dbc 686 SUPERFAMILY SSF52540 9 211 3.08E-16 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04875 3f4c5d58fe586ba8c8b1e4f26d0e3dbc 686 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 380 680 4.3E-128 T 26-04-2016 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RGE_RS04875 3f4c5d58fe586ba8c8b1e4f26d0e3dbc 686 Gene3D G3DSA:3.40.1390.20 205 338 1.2E-23 T 26-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like RGE_RS04875 3f4c5d58fe586ba8c8b1e4f26d0e3dbc 686 PANTHER PTHR23406:SF3 148 684 2.1E-53 T 26-04-2016 RGE_RS04875 3f4c5d58fe586ba8c8b1e4f26d0e3dbc 686 Pfam PF07085 DRTGG domain 209 319 1.2E-21 T 26-04-2016 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RGE_RS04875 3f4c5d58fe586ba8c8b1e4f26d0e3dbc 686 Pfam PF13500 AAA domain 10 205 2.8E-22 T 26-04-2016 RGE_RS01475 6fb8292d283e1644a44655cc165dfecb 364 SUPERFAMILY SSF51735 1 172 1.11E-22 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS01475 6fb8292d283e1644a44655cc165dfecb 364 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 3 98 1.6E-16 T 26-04-2016 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 RGE_RS01475 6fb8292d283e1644a44655cc165dfecb 364 Gene3D G3DSA:3.40.50.720 1 166 6.3E-34 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS01475 6fb8292d283e1644a44655cc165dfecb 364 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 120 341 4.1E-13 T 26-04-2016 IPR032095 Saccharopine dehydrogenase, C-terminal RGE_RS01475 6fb8292d283e1644a44655cc165dfecb 364 SUPERFAMILY SSF55347 121 359 5.62E-56 T 26-04-2016 RGE_RS20535 1085a84d379f55b4823a16465025c2d2 429 Gene3D G3DSA:3.40.640.10 70 321 5.2E-73 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS20535 1085a84d379f55b4823a16465025c2d2 429 SUPERFAMILY SSF53383 2 427 2.25E-120 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS20535 1085a84d379f55b4823a16465025c2d2 429 Gene3D G3DSA:3.90.1150.10 2 69 1.0E-40 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS20535 1085a84d379f55b4823a16465025c2d2 429 Gene3D G3DSA:3.90.1150.10 324 427 1.0E-40 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS20535 1085a84d379f55b4823a16465025c2d2 429 PANTHER PTHR11986 1 428 2.4E-195 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS20535 1085a84d379f55b4823a16465025c2d2 429 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 4 422 2.3E-177 T 26-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 RGE_RS20535 1085a84d379f55b4823a16465025c2d2 429 Pfam PF00202 Aminotransferase class-III 33 400 3.6E-72 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS20535 1085a84d379f55b4823a16465025c2d2 429 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 427 97.719 T 26-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 RGE_RS20535 1085a84d379f55b4823a16465025c2d2 429 PANTHER PTHR11986:SF5 1 428 2.4E-195 T 26-04-2016 RGE_RS13015 a16cdd53b6d772dbeb0f8a27923ab47a 181 Gene3D G3DSA:3.10.180.10 1 172 4.8E-43 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS13015 a16cdd53b6d772dbeb0f8a27923ab47a 181 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 114 133 - T 26-04-2016 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 RGE_RS13015 a16cdd53b6d772dbeb0f8a27923ab47a 181 PANTHER PTHR21366 1 173 8.4E-39 T 26-04-2016 RGE_RS13015 a16cdd53b6d772dbeb0f8a27923ab47a 181 SUPERFAMILY SSF54593 3 137 2.15E-38 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS13015 a16cdd53b6d772dbeb0f8a27923ab47a 181 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 134 1.8E-19 T 26-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RGE_RS13015 a16cdd53b6d772dbeb0f8a27923ab47a 181 PANTHER PTHR21366:SF4 1 173 8.4E-39 T 26-04-2016 RGE_RS14770 4ebe55939c93f8abf90c5ba95775892d 172 Pfam PF05638 Type VI secretion system effector, Hcp 5 147 1.2E-35 T 26-04-2016 IPR008514 Type VI secretion system effector, Hcp RGE_RS14770 4ebe55939c93f8abf90c5ba95775892d 172 SUPERFAMILY SSF141452 1 170 7.06E-40 T 26-04-2016 IPR008514 Type VI secretion system effector, Hcp RGE_RS14770 4ebe55939c93f8abf90c5ba95775892d 172 PANTHER PTHR36152 3 172 1.9E-22 T 26-04-2016 RGE_RS14770 4ebe55939c93f8abf90c5ba95775892d 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 13 159 2.0E-24 T 26-04-2016 IPR008514 Type VI secretion system effector, Hcp RGE_RS14770 4ebe55939c93f8abf90c5ba95775892d 172 Gene3D G3DSA:2.30.110.20 3 169 4.6E-45 T 26-04-2016 IPR008514 Type VI secretion system effector, Hcp RGE_RS21815 ef4dd1e665c75ba3232c3ff9fc1b3641 249 Pfam PF01227 GTP cyclohydrolase I 65 244 2.6E-52 T 26-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RGE_RS21815 ef4dd1e665c75ba3232c3ff9fc1b3641 249 Gene3D G3DSA:3.30.1130.10 116 246 2.5E-41 T 26-04-2016 RGE_RS21815 ef4dd1e665c75ba3232c3ff9fc1b3641 249 Gene3D G3DSA:1.10.286.10 59 104 5.9E-15 T 26-04-2016 RGE_RS21815 ef4dd1e665c75ba3232c3ff9fc1b3641 249 SUPERFAMILY SSF55620 29 245 2.74E-63 T 26-04-2016 RGE_RS21815 ef4dd1e665c75ba3232c3ff9fc1b3641 249 PANTHER PTHR11109 86 244 2.2E-35 T 26-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RGE_RS00495 79c43fd3dd401718f0a5b6facc00454a 284 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 279 1.4E-69 T 26-04-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 RGE_RS00495 79c43fd3dd401718f0a5b6facc00454a 284 SUPERFAMILY SSF53335 9 277 2.3E-82 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS00495 79c43fd3dd401718f0a5b6facc00454a 284 Gene3D G3DSA:3.40.50.150 1 278 4.0E-103 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS00495 79c43fd3dd401718f0a5b6facc00454a 284 PANTHER PTHR37426 2 284 3.2E-100 T 26-04-2016 RGE_RS00495 79c43fd3dd401718f0a5b6facc00454a 284 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 271 37.139 T 26-04-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 RGE_RS00495 79c43fd3dd401718f0a5b6facc00454a 284 PANTHER PTHR37426:SF1 2 284 3.2E-100 T 26-04-2016 RGE_RS00085 66428aec4f19233c73f6f57931f66500 298 Gene3D G3DSA:1.10.10.10 4 85 4.1E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00085 66428aec4f19233c73f6f57931f66500 298 SUPERFAMILY SSF53850 90 296 3.26E-44 T 26-04-2016 RGE_RS00085 66428aec4f19233c73f6f57931f66500 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 9.2E-17 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00085 66428aec4f19233c73f6f57931f66500 298 Pfam PF03466 LysR substrate binding domain 90 295 8.4E-39 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS00085 66428aec4f19233c73f6f57931f66500 298 Gene3D G3DSA:3.40.190.10 92 174 3.6E-24 T 26-04-2016 RGE_RS00085 66428aec4f19233c73f6f57931f66500 298 SUPERFAMILY SSF46785 3 112 5.2E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00085 66428aec4f19233c73f6f57931f66500 298 Gene3D G3DSA:3.40.190.10 175 264 3.2E-17 T 26-04-2016 RGE_RS00085 66428aec4f19233c73f6f57931f66500 298 PANTHER PTHR30537 1 295 4.9E-127 T 26-04-2016 RGE_RS00085 66428aec4f19233c73f6f57931f66500 298 PANTHER PTHR30537:SF17 1 295 4.9E-127 T 26-04-2016 RGE_RS02415 9a8b62a5732e2125269b027a95452544 227 PANTHER PTHR11260 9 201 1.1E-44 T 26-04-2016 RGE_RS02415 9a8b62a5732e2125269b027a95452544 227 SUPERFAMILY SSF47616 87 213 2.27E-15 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS02415 9a8b62a5732e2125269b027a95452544 227 Pfam PF13417 Glutathione S-transferase, N-terminal domain 11 84 1.9E-12 T 26-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RGE_RS02415 9a8b62a5732e2125269b027a95452544 227 Gene3D G3DSA:1.20.1050.10 96 214 2.4E-40 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS02415 9a8b62a5732e2125269b027a95452544 227 SUPERFAMILY SSF52833 5 90 3.56E-18 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS02415 9a8b62a5732e2125269b027a95452544 227 PANTHER PTHR11260:SF144 9 201 1.1E-44 T 26-04-2016 RGE_RS02415 9a8b62a5732e2125269b027a95452544 227 Gene3D G3DSA:3.40.30.10 12 95 2.5E-19 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20195 16d4c22a949628216ee2bcb41f7e6b15 480 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 6 477 9.7E-195 T 26-04-2016 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 RGE_RS20195 16d4c22a949628216ee2bcb41f7e6b15 480 SUPERFAMILY SSF51182 189 477 6.28E-82 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS20195 16d4c22a949628216ee2bcb41f7e6b15 480 Gene3D G3DSA:3.90.550.10 5 279 2.1E-90 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS20195 16d4c22a949628216ee2bcb41f7e6b15 480 Pfam PF01050 Mannose-6-phosphate isomerase 323 473 2.1E-71 T 26-04-2016 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 RGE_RS20195 16d4c22a949628216ee2bcb41f7e6b15 480 Gene3D G3DSA:2.60.120.10 365 477 1.0E-48 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS20195 16d4c22a949628216ee2bcb41f7e6b15 480 Pfam PF00483 Nucleotidyl transferase 7 295 2.8E-58 T 26-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RGE_RS20195 16d4c22a949628216ee2bcb41f7e6b15 480 PANTHER PTHR12526 360 479 8.7E-98 T 26-04-2016 RGE_RS20195 16d4c22a949628216ee2bcb41f7e6b15 480 PANTHER PTHR12526 160 297 8.7E-98 T 26-04-2016 RGE_RS20195 16d4c22a949628216ee2bcb41f7e6b15 480 SUPERFAMILY SSF53448 5 289 8.92E-60 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS20195 16d4c22a949628216ee2bcb41f7e6b15 480 PANTHER PTHR12526:SF387 360 479 8.7E-98 T 26-04-2016 RGE_RS20195 16d4c22a949628216ee2bcb41f7e6b15 480 PANTHER PTHR12526:SF387 160 297 8.7E-98 T 26-04-2016 RGE_RS06400 6b140b60536e26fa89ebfcd7d1ba5c1a 191 SUPERFAMILY SSF55729 4 179 3.48E-43 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06400 6b140b60536e26fa89ebfcd7d1ba5c1a 191 Gene3D G3DSA:3.40.630.30 4 179 6.4E-45 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06400 6b140b60536e26fa89ebfcd7d1ba5c1a 191 PANTHER PTHR13256 8 181 5.4E-37 T 26-04-2016 RGE_RS06400 6b140b60536e26fa89ebfcd7d1ba5c1a 191 Pfam PF13302 Acetyltransferase (GNAT) domain 12 155 7.5E-29 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS12930 3da18e7f431ba6f774879f68df98f043 225 PANTHER PTHR23091 12 142 6.8E-15 T 26-04-2016 RGE_RS12930 3da18e7f431ba6f774879f68df98f043 225 Pfam PF13527 Acetyltransferase (GNAT) domain 13 143 1.1E-8 T 26-04-2016 RGE_RS12930 3da18e7f431ba6f774879f68df98f043 225 PANTHER PTHR23091:SF130 12 142 6.8E-15 T 26-04-2016 RGE_RS12930 3da18e7f431ba6f774879f68df98f043 225 SUPERFAMILY SSF55729 13 150 2.26E-23 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS12930 3da18e7f431ba6f774879f68df98f043 225 Gene3D G3DSA:3.40.630.30 10 144 7.3E-19 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS21155 bad5263afb28fcdd87e7cd736dbd2871 166 Gene3D G3DSA:3.90.960.10 14 164 1.4E-42 T 26-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RGE_RS21155 bad5263afb28fcdd87e7cd736dbd2871 166 Pfam PF04073 Aminoacyl-tRNA editing domain 36 153 3.5E-24 T 26-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RGE_RS21155 bad5263afb28fcdd87e7cd736dbd2871 166 PANTHER PTHR30411 11 162 8.5E-25 T 26-04-2016 RGE_RS21155 bad5263afb28fcdd87e7cd736dbd2871 166 SUPERFAMILY SSF55826 15 163 2.75E-32 T 26-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RGE_RS21155 bad5263afb28fcdd87e7cd736dbd2871 166 PANTHER PTHR30411:SF1 11 162 8.5E-25 T 26-04-2016 RGE_RS02500 ac5d243b0db3ee9012fa2a02fcc9270b 351 PIRSF PIRSF028757 3 341 2.0E-57 T 26-04-2016 IPR003507 Peptidase family S66 RGE_RS02500 ac5d243b0db3ee9012fa2a02fcc9270b 351 Gene3D G3DSA:3.40.50.10740 1 160 1.0E-39 T 26-04-2016 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain RGE_RS02500 ac5d243b0db3ee9012fa2a02fcc9270b 351 Pfam PF02016 LD-carboxypeptidase 15 335 4.6E-60 T 26-04-2016 IPR003507 Peptidase family S66 RGE_RS02500 ac5d243b0db3ee9012fa2a02fcc9270b 351 Gene3D G3DSA:3.50.30.60 208 338 2.6E-18 T 26-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RGE_RS02500 ac5d243b0db3ee9012fa2a02fcc9270b 351 PANTHER PTHR30237 3 338 5.3E-47 T 26-04-2016 RGE_RS02500 ac5d243b0db3ee9012fa2a02fcc9270b 351 SUPERFAMILY SSF141986 195 339 5.75E-19 T 26-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RGE_RS02500 ac5d243b0db3ee9012fa2a02fcc9270b 351 SUPERFAMILY SSF52317 2 162 2.88E-38 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS09150 d974f3bce6b1ccdfc804fc1227f8a3f5 260 SUPERFAMILY SSF53790 10 250 1.7E-74 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09150 d974f3bce6b1ccdfc804fc1227f8a3f5 260 Gene3D G3DSA:3.30.950.10 129 253 6.6E-46 T 26-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RGE_RS09150 d974f3bce6b1ccdfc804fc1227f8a3f5 260 PANTHER PTHR21091:SF16 13 244 2.1E-67 T 26-04-2016 RGE_RS09150 d974f3bce6b1ccdfc804fc1227f8a3f5 260 Gene3D G3DSA:3.40.1010.10 13 128 1.6E-38 T 26-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RGE_RS09150 d974f3bce6b1ccdfc804fc1227f8a3f5 260 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 18 32 - T 26-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RGE_RS09150 d974f3bce6b1ccdfc804fc1227f8a3f5 260 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 14 226 2.7E-45 T 26-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RGE_RS09150 d974f3bce6b1ccdfc804fc1227f8a3f5 260 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 13 249 3.2E-84 T 26-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RGE_RS09150 d974f3bce6b1ccdfc804fc1227f8a3f5 260 PANTHER PTHR21091 13 244 2.1E-67 T 26-04-2016 RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 SUPERFAMILY SSF46626 305 430 5.73E-19 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 PANTHER PTHR30600 35 84 3.8E-91 T 26-04-2016 RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 PANTHER PTHR30600 152 199 3.8E-91 T 26-04-2016 RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 PANTHER PTHR30600 222 430 3.8E-91 T 26-04-2016 RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 Gene3D G3DSA:1.10.760.10 307 430 8.5E-14 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 Gene3D G3DSA:1.10.760.10 25 135 7.3E-6 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 Gene3D G3DSA:1.10.760.10 213 297 7.3E-6 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 PANTHER PTHR30600:SF4 35 84 3.8E-91 T 26-04-2016 RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 PANTHER PTHR30600:SF4 152 199 3.8E-91 T 26-04-2016 RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 PANTHER PTHR30600:SF4 222 430 3.8E-91 T 26-04-2016 RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 24 430 3.1E-94 T 26-04-2016 IPR010538 Di-haem oxidoreductase, putative peroxidase RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 SUPERFAMILY SSF46626 9 128 1.25E-6 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10155 6872e6b4bca1474bf0e9ae791261637c 431 PIRSF PIRSF028099 7 431 1.3E-133 T 26-04-2016 IPR010538 Di-haem oxidoreductase, putative peroxidase RGE_RS16660 91cdaaae6a64d812f38049c7cbe0d343 407 Pfam PF01610 Transposase 292 403 1.5E-5 T 26-04-2016 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain RGE_RS16660 91cdaaae6a64d812f38049c7cbe0d343 407 PANTHER PTHR11351:SF33 23 392 2.3E-136 T 26-04-2016 RGE_RS16660 91cdaaae6a64d812f38049c7cbe0d343 407 PANTHER PTHR11351 23 392 2.3E-136 T 26-04-2016 RGE_RS16660 91cdaaae6a64d812f38049c7cbe0d343 407 Pfam PF00487 Fatty acid desaturase 23 245 3.0E-16 T 26-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 RGE_RS12435 f326a8cccf0d0ed13a8ae5348e1f841b 363 Gene3D G3DSA:3.40.640.10 39 256 9.4E-70 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS12435 f326a8cccf0d0ed13a8ae5348e1f841b 363 PANTHER PTHR11751 1 353 1.3E-81 T 26-04-2016 RGE_RS12435 f326a8cccf0d0ed13a8ae5348e1f841b 363 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 6 351 3.7E-88 T 26-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 RGE_RS12435 f326a8cccf0d0ed13a8ae5348e1f841b 363 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 2 354 50.483 T 26-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 RGE_RS12435 f326a8cccf0d0ed13a8ae5348e1f841b 363 Gene3D G3DSA:3.90.1150.10 257 354 1.2E-15 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS12435 f326a8cccf0d0ed13a8ae5348e1f841b 363 PANTHER PTHR11751:SF347 1 353 1.3E-81 T 26-04-2016 RGE_RS12435 f326a8cccf0d0ed13a8ae5348e1f841b 363 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 214 223 - T 26-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 RGE_RS12435 f326a8cccf0d0ed13a8ae5348e1f841b 363 SUPERFAMILY SSF53383 17 353 3.75E-82 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS12435 f326a8cccf0d0ed13a8ae5348e1f841b 363 Pfam PF00155 Aminotransferase class I and II 25 345 1.1E-52 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS00365 1dde3d119df7032a6966a56669f8178d 210 PANTHER PTHR34606:SF4 13 195 1.5E-37 T 26-04-2016 RGE_RS00365 1dde3d119df7032a6966a56669f8178d 210 PANTHER PTHR34606 13 195 1.5E-37 T 26-04-2016 RGE_RS00365 1dde3d119df7032a6966a56669f8178d 210 SMART SM00749 50 113 77.0 T 26-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria RGE_RS00365 1dde3d119df7032a6966a56669f8178d 210 SMART SM00749 127 190 0.0018 T 26-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria RGE_RS00365 1dde3d119df7032a6966a56669f8178d 210 Pfam PF04972 BON domain 122 187 3.9E-14 T 26-04-2016 IPR007055 BON domain RGE_RS00365 1dde3d119df7032a6966a56669f8178d 210 Pfam PF04972 BON domain 66 112 1.3E-11 T 26-04-2016 IPR007055 BON domain RGE_RS02525 edc8af77541dc9fdd432c58bb74dd019 296 PIRSF PIRSF026649 1 293 2.4E-83 T 26-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RGE_RS02525 edc8af77541dc9fdd432c58bb74dd019 296 PANTHER PTHR30606 8 296 8.5E-78 T 26-04-2016 RGE_RS02525 edc8af77541dc9fdd432c58bb74dd019 296 PANTHER PTHR30606:SF5 8 296 8.5E-78 T 26-04-2016 RGE_RS02525 edc8af77541dc9fdd432c58bb74dd019 296 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 7 284 1.6E-63 T 26-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 530 549 2.8E-47 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 634 656 2.8E-47 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 475 493 2.8E-47 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 560 580 2.8E-47 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 502 526 2.8E-47 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 615 630 2.8E-47 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 Gene3D G3DSA:2.130.10.120 79 243 7.6E-4 T 26-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 PANTHER PTHR11757 20 702 2.4E-281 T 26-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 29 433 7.1E-21 T 26-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 SUPERFAMILY SSF50993 23 439 8.11E-53 T 26-04-2016 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 Gene3D G3DSA:3.40.50.1820 397 701 2.3E-94 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 Pfam PF00326 Prolyl oligopeptidase family 499 702 1.4E-51 T 26-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 PANTHER PTHR11757:SF13 20 702 2.4E-281 T 26-04-2016 RGE_RS10475 28b6fbf48e24adc87b81fedb76500eb8 703 SUPERFAMILY SSF53474 443 697 9.31E-51 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS14310 69b838a8e456e10f0c8d2c49d4db64db 402 Gene3D G3DSA:1.25.40.10 355 390 5.5E-6 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS14310 69b838a8e456e10f0c8d2c49d4db64db 402 PANTHER PTHR30173:SF7 1 372 1.0E-144 T 26-04-2016 RGE_RS14310 69b838a8e456e10f0c8d2c49d4db64db 402 SUPERFAMILY SSF88946 3 87 2.28E-13 T 26-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14310 69b838a8e456e10f0c8d2c49d4db64db 402 Pfam PF04542 Sigma-70 region 2 9 76 1.7E-8 T 26-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14310 69b838a8e456e10f0c8d2c49d4db64db 402 Gene3D G3DSA:1.10.10.10 102 161 6.7E-11 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14310 69b838a8e456e10f0c8d2c49d4db64db 402 PANTHER PTHR30173 1 372 1.0E-144 T 26-04-2016 RGE_RS14310 69b838a8e456e10f0c8d2c49d4db64db 402 Pfam PF08281 Sigma-70, region 4 109 159 1.5E-6 T 26-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14310 69b838a8e456e10f0c8d2c49d4db64db 402 SUPERFAMILY SSF88659 99 160 4.71E-9 T 26-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RGE_RS14310 69b838a8e456e10f0c8d2c49d4db64db 402 Gene3D G3DSA:1.10.1740.10 2 97 2.9E-12 T 26-04-2016 RGE_RS14265 878d10f3383a1da3c24edb25ec06226d 277 PANTHER PTHR31611 16 224 1.6E-15 T 26-04-2016 RGE_RS14265 878d10f3383a1da3c24edb25ec06226d 277 Pfam PF03824 High-affinity nickel-transport protein 11 78 3.8E-8 T 26-04-2016 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 RGE_RS23180 45e5155321f5a4093e19f1b7d9943e59 145 SUPERFAMILY SSF110087 15 140 8.11E-16 T 26-04-2016 IPR007410 DR1885-like metal-binding protein RGE_RS23180 45e5155321f5a4093e19f1b7d9943e59 145 Pfam PF04314 Protein of unknown function (DUF461) 38 133 5.2E-9 T 26-04-2016 IPR007410 DR1885-like metal-binding protein RGE_RS16745 f414a19fc4e61caad9ac47e714b26b5d 523 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 55 499 4.2E-150 T 26-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 RGE_RS16745 f414a19fc4e61caad9ac47e714b26b5d 523 PANTHER PTHR30047:SF2 19 517 2.9E-207 T 26-04-2016 RGE_RS16745 f414a19fc4e61caad9ac47e714b26b5d 523 PANTHER PTHR30047 19 517 2.9E-207 T 26-04-2016 RGE_RS16745 f414a19fc4e61caad9ac47e714b26b5d 523 ProSitePatterns PS01303 BCCT family of transporters signature. 317 326 - T 26-04-2016 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 RGE_RS16745 f414a19fc4e61caad9ac47e714b26b5d 523 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 19 499 2.8E-184 T 26-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 RGE_RS06115 02e5a668158405d35b4433c0116ec4e8 842 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 212 283 4.8E-24 T 26-04-2016 IPR020012 Motility protein FimV, N-terminal RGE_RS06115 02e5a668158405d35b4433c0116ec4e8 842 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 799 841 1.3E-13 T 26-04-2016 IPR020011 Motility protein FimV, C-terminal RGE_RS11465 2bcbc68825ddda53ad7e3c32fb6015ed 147 PANTHER PTHR31793:SF7 1 143 4.0E-57 T 26-04-2016 RGE_RS11465 2bcbc68825ddda53ad7e3c32fb6015ed 147 PANTHER PTHR31793 1 143 4.0E-57 T 26-04-2016 RGE_RS11465 2bcbc68825ddda53ad7e3c32fb6015ed 147 SUPERFAMILY SSF54637 9 143 3.65E-37 T 26-04-2016 IPR029069 HotDog domain RGE_RS11465 2bcbc68825ddda53ad7e3c32fb6015ed 147 Gene3D G3DSA:3.10.129.10 4 145 5.2E-49 T 26-04-2016 IPR029069 HotDog domain RGE_RS11465 2bcbc68825ddda53ad7e3c32fb6015ed 147 Pfam PF03061 Thioesterase superfamily 29 110 7.5E-14 T 26-04-2016 IPR006683 Thioesterase domain RGE_RS11840 8203f12f0b10832bb94e9929e0bad3c9 148 Pfam PF01641 SelR domain 26 145 2.9E-55 T 26-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RGE_RS11840 8203f12f0b10832bb94e9929e0bad3c9 148 PANTHER PTHR10173:SF18 18 146 2.8E-65 T 26-04-2016 RGE_RS11840 8203f12f0b10832bb94e9929e0bad3c9 148 SUPERFAMILY SSF51316 20 147 1.6E-60 T 26-04-2016 IPR011057 Mss4-like RGE_RS11840 8203f12f0b10832bb94e9929e0bad3c9 148 Gene3D G3DSA:2.170.150.20 17 147 2.0E-64 T 26-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RGE_RS11840 8203f12f0b10832bb94e9929e0bad3c9 148 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 22 146 2.7E-58 T 26-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RGE_RS11840 8203f12f0b10832bb94e9929e0bad3c9 148 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 23 146 37.713 T 26-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RGE_RS11840 8203f12f0b10832bb94e9929e0bad3c9 148 PANTHER PTHR10173 18 146 2.8E-65 T 26-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 RGE_RS09755 8d75c9fcf074a8bd2119a0255adcb94b 314 Gene3D G3DSA:3.60.21.30 28 257 1.3E-13 T 26-04-2016 RGE_RS09755 8d75c9fcf074a8bd2119a0255adcb94b 314 PANTHER PTHR33393 26 261 3.5E-49 T 26-04-2016 RGE_RS09755 8d75c9fcf074a8bd2119a0255adcb94b 314 PANTHER PTHR33393:SF2 26 261 3.5E-49 T 26-04-2016 RGE_RS09755 8d75c9fcf074a8bd2119a0255adcb94b 314 SUPERFAMILY SSF56300 25 265 8.76E-35 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS09755 8d75c9fcf074a8bd2119a0255adcb94b 314 SMART SM00854 28 262 1.2E-87 T 26-04-2016 IPR019079 Capsule synthesis protein, CapA RGE_RS09755 8d75c9fcf074a8bd2119a0255adcb94b 314 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 29 261 7.2E-69 T 26-04-2016 IPR019079 Capsule synthesis protein, CapA RGE_RS00925 1d3d16fafb07d6c741bad688204337da 246 PANTHER PTHR14194:SF69 1 244 1.4E-83 T 26-04-2016 RGE_RS00925 1d3d16fafb07d6c741bad688204337da 246 PANTHER PTHR14194 1 244 1.4E-83 T 26-04-2016 RGE_RS00925 1d3d16fafb07d6c741bad688204337da 246 Gene3D G3DSA:3.40.50.720 1 199 2.7E-23 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00925 1d3d16fafb07d6c741bad688204337da 246 SUPERFAMILY SSF51735 1 217 2.61E-29 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00925 1d3d16fafb07d6c741bad688204337da 246 Pfam PF13460 NAD(P)H-binding 7 174 5.8E-10 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS01790 bffb9a8c9ba6335a06f0befdf6118d74 415 PANTHER PTHR11926:SF335 10 384 1.8E-58 T 26-04-2016 RGE_RS01790 bffb9a8c9ba6335a06f0befdf6118d74 415 SUPERFAMILY SSF53756 13 398 1.71E-52 T 26-04-2016 RGE_RS01790 bffb9a8c9ba6335a06f0befdf6118d74 415 PANTHER PTHR11926 10 384 1.8E-58 T 26-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 RGE_RS01790 bffb9a8c9ba6335a06f0befdf6118d74 415 Gene3D G3DSA:3.40.50.2000 18 246 6.8E-9 T 26-04-2016 RGE_RS01790 bffb9a8c9ba6335a06f0befdf6118d74 415 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 309 381 1.0E-5 T 26-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 RGE_RS01790 bffb9a8c9ba6335a06f0befdf6118d74 415 Gene3D G3DSA:3.40.50.2000 247 389 6.3E-21 T 26-04-2016 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 PANTHER PTHR30478 4 369 1.3E-117 T 26-04-2016 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 7 120 1.6E-26 T 26-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 PIRSF PIRSF000804 2 369 3.1E-116 T 26-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 SUPERFAMILY SSF55979 130 247 9.99E-29 T 26-04-2016 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 SMART SM00480 18 365 3.0E-111 T 26-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 Gene3D G3DSA:3.10.150.10 5 121 2.6E-25 T 26-04-2016 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 7 368 2.6E-94 T 26-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 Pfam PF02767 DNA polymerase III beta subunit, central domain 132 246 2.8E-31 T 26-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 Gene3D G3DSA:3.10.150.10 130 250 2.5E-39 T 26-04-2016 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 SUPERFAMILY SSF55979 7 118 2.08E-21 T 26-04-2016 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 249 368 3.6E-33 T 26-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 Gene3D G3DSA:3.10.150.10 251 369 1.8E-38 T 26-04-2016 RGE_RS00020 9e564e5a38c82be8e99632078725814d 369 SUPERFAMILY SSF55979 248 369 2.57E-36 T 26-04-2016 RGE_RS20785 ee4cd5e0da705e7dedf794537463ea69 410 PANTHER PTHR30012 17 410 7.3E-153 T 26-04-2016 RGE_RS20785 ee4cd5e0da705e7dedf794537463ea69 410 Pfam PF00482 Type II secretion system (T2SS), protein F 280 402 4.4E-30 T 26-04-2016 IPR018076 Type II secretion system F domain RGE_RS20785 ee4cd5e0da705e7dedf794537463ea69 410 Pfam PF00482 Type II secretion system (T2SS), protein F 76 199 6.9E-35 T 26-04-2016 IPR018076 Type II secretion system F domain RGE_RS20785 ee4cd5e0da705e7dedf794537463ea69 410 PRINTS PR00812 Bacterial general secretion pathway protein F signature 171 199 2.6E-18 T 26-04-2016 IPR003004 GspF/PilC family RGE_RS20785 ee4cd5e0da705e7dedf794537463ea69 410 PRINTS PR00812 Bacterial general secretion pathway protein F signature 391 410 2.6E-18 T 26-04-2016 IPR003004 GspF/PilC family RGE_RS20785 ee4cd5e0da705e7dedf794537463ea69 410 PRINTS PR00812 Bacterial general secretion pathway protein F signature 375 389 2.6E-18 T 26-04-2016 IPR003004 GspF/PilC family RGE_RS20785 ee4cd5e0da705e7dedf794537463ea69 410 PRINTS PR00812 Bacterial general secretion pathway protein F signature 72 84 2.6E-18 T 26-04-2016 IPR003004 GspF/PilC family RGE_RS20785 ee4cd5e0da705e7dedf794537463ea69 410 PANTHER PTHR30012:SF0 17 410 7.3E-153 T 26-04-2016 RGE_RS12275 3fc647b46a4505b13b8d6cfe8c261836 391 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 9 387 1.6E-123 T 26-04-2016 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 RGE_RS12275 3fc647b46a4505b13b8d6cfe8c261836 391 PANTHER PTHR30536 4 391 1.1E-151 T 26-04-2016 RGE_RS22835 28a454ec157230344bfafb3b5397da76 605 PIRSF PIRSF002741 1 597 4.4E-51 T 26-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RGE_RS22835 28a454ec157230344bfafb3b5397da76 605 PANTHER PTHR30290 274 605 7.4E-71 T 26-04-2016 RGE_RS22835 28a454ec157230344bfafb3b5397da76 605 PANTHER PTHR30290 1 148 7.4E-71 T 26-04-2016 RGE_RS22835 28a454ec157230344bfafb3b5397da76 605 PANTHER PTHR30290 172 255 7.4E-71 T 26-04-2016 RGE_RS22835 28a454ec157230344bfafb3b5397da76 605 Gene3D G3DSA:3.10.105.10 369 567 2.1E-36 T 26-04-2016 RGE_RS22835 28a454ec157230344bfafb3b5397da76 605 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 515 1.2E-72 T 26-04-2016 IPR000914 Solute-binding protein family 5 domain RGE_RS22835 28a454ec157230344bfafb3b5397da76 605 Gene3D G3DSA:3.90.76.10 43 220 4.0E-26 T 26-04-2016 RGE_RS22835 28a454ec157230344bfafb3b5397da76 605 SUPERFAMILY SSF53850 29 597 4.89E-84 T 26-04-2016 RGE_RS22835 28a454ec157230344bfafb3b5397da76 605 Gene3D G3DSA:3.40.190.10 221 368 5.3E-23 T 26-04-2016 RGE_RS05885 d6997e64c0610f1d987910a99d02a060 230 PANTHER PTHR31851 1 226 3.2E-59 T 26-04-2016 RGE_RS05885 d6997e64c0610f1d987910a99d02a060 230 Pfam PF01988 VIT family 16 223 6.8E-50 T 26-04-2016 IPR008217 Ccc1 family RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 Gene3D G3DSA:3.50.50.60 347 419 2.8E-4 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 519 530 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 489 500 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 Gene3D G3DSA:1.10.1060.10 438 536 4.4E-18 T 26-04-2016 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 Gene3D G3DSA:1.10.1060.10 34 128 1.6E-23 T 26-04-2016 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 Pfam PF00037 4Fe-4S binding domain 513 535 1.9E-5 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 273 1.9E-15 T 26-04-2016 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 346 362 1.9E-15 T 26-04-2016 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 374 396 1.9E-15 T 26-04-2016 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 221 239 1.9E-15 T 26-04-2016 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 127 146 1.9E-15 T 26-04-2016 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 Gene3D G3DSA:3.50.50.60 209 346 1.1E-33 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 34 112 1.1E-16 T 26-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 251 275 2.8E-12 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 126 148 2.8E-12 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 384 402 2.8E-12 T 26-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 PANTHER PTHR11938 35 421 9.8E-71 T 26-04-2016 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 126 409 6.2E-29 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 SUPERFAMILY SSF54862 34 49 7.95E-15 T 26-04-2016 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 SUPERFAMILY SSF54862 455 537 7.95E-15 T 26-04-2016 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 PANTHER PTHR11938:SF99 35 421 9.8E-71 T 26-04-2016 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 SUPERFAMILY SSF51971 124 355 7.06E-47 T 26-04-2016 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 Gene3D G3DSA:3.50.50.60 129 203 3.8E-19 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS13980 c195736d1edb1aae243287dff2c5446d 541 SUPERFAMILY SSF46548 33 134 4.87E-19 T 26-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RGE_RS05540 06941dfbe3cae165cdfe9948e1049bdc 339 SUPERFAMILY SSF53474 66 337 1.29E-67 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS05540 06941dfbe3cae165cdfe9948e1049bdc 339 PANTHER PTHR23024 87 339 5.0E-76 T 26-04-2016 RGE_RS05540 06941dfbe3cae165cdfe9948e1049bdc 339 PANTHER PTHR23024:SF24 87 339 5.0E-76 T 26-04-2016 RGE_RS05540 06941dfbe3cae165cdfe9948e1049bdc 339 Pfam PF07859 alpha/beta hydrolase fold 111 315 2.4E-66 T 26-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 RGE_RS05540 06941dfbe3cae165cdfe9948e1049bdc 339 Gene3D G3DSA:3.40.50.1820 49 337 6.7E-86 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS22150 07100b805ce1af400f0dd91cdab80acd 319 PANTHER PTHR30537:SF5 1 315 1.1E-85 T 26-04-2016 RGE_RS22150 07100b805ce1af400f0dd91cdab80acd 319 SUPERFAMILY SSF46785 4 85 4.61E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22150 07100b805ce1af400f0dd91cdab80acd 319 Pfam PF03466 LysR substrate binding domain 88 299 4.0E-36 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS22150 07100b805ce1af400f0dd91cdab80acd 319 Gene3D G3DSA:3.40.190.10 176 267 2.0E-17 T 26-04-2016 RGE_RS22150 07100b805ce1af400f0dd91cdab80acd 319 SUPERFAMILY SSF53850 87 302 4.16E-37 T 26-04-2016 RGE_RS22150 07100b805ce1af400f0dd91cdab80acd 319 Gene3D G3DSA:3.40.190.10 92 175 1.8E-18 T 26-04-2016 RGE_RS22150 07100b805ce1af400f0dd91cdab80acd 319 PANTHER PTHR30537 1 315 1.1E-85 T 26-04-2016 RGE_RS22150 07100b805ce1af400f0dd91cdab80acd 319 Gene3D G3DSA:1.10.10.10 2 80 1.4E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS22150 07100b805ce1af400f0dd91cdab80acd 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.2E-18 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS14535 8e57e55906d29fac8650156989c39f67 266 SUPERFAMILY SSF55781 101 263 3.86E-29 T 26-04-2016 IPR029016 GAF domain-like RGE_RS14535 8e57e55906d29fac8650156989c39f67 266 Pfam PF09339 IclR helix-turn-helix domain 31 81 2.8E-9 T 26-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RGE_RS14535 8e57e55906d29fac8650156989c39f67 266 SMART SM00346 28 115 0.0021 T 26-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RGE_RS14535 8e57e55906d29fac8650156989c39f67 266 Pfam PF01614 Bacterial transcriptional regulator 147 255 2.3E-15 T 26-04-2016 IPR014757 Transcription regulator IclR, C-terminal RGE_RS14535 8e57e55906d29fac8650156989c39f67 266 Gene3D G3DSA:1.10.10.10 19 86 1.2E-12 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14535 8e57e55906d29fac8650156989c39f67 266 PANTHER PTHR30136 4 261 1.8E-33 T 26-04-2016 RGE_RS14535 8e57e55906d29fac8650156989c39f67 266 Gene3D G3DSA:3.30.450.40 96 261 1.0E-30 T 26-04-2016 IPR029016 GAF domain-like RGE_RS14535 8e57e55906d29fac8650156989c39f67 266 SUPERFAMILY SSF46785 30 91 1.73E-9 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS08770 1ee42c8266e79ceb4c01b3b3e4f4987c 296 PANTHER PTHR34580 129 203 1.1E-12 T 26-04-2016 RGE_RS08770 1ee42c8266e79ceb4c01b3b3e4f4987c 296 PANTHER PTHR34580:SF3 129 203 1.1E-12 T 26-04-2016 RGE_RS08770 1ee42c8266e79ceb4c01b3b3e4f4987c 296 Pfam PF13280 WYL domain 129 212 4.3E-13 T 26-04-2016 IPR026881 WYL domain RGE_RS08770 1ee42c8266e79ceb4c01b3b3e4f4987c 296 PIRSF PIRSF015558 4 295 3.4E-95 T 26-04-2016 IPR016634 Transcription regulator, DeoR type, predicted RGE_RS14020 ecf3a07dc29cb71f8d423d6b46055c38 261 SUPERFAMILY SSF56300 2 231 1.57E-46 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS14020 ecf3a07dc29cb71f8d423d6b46055c38 261 Pfam PF00149 Calcineurin-like phosphoesterase 4 189 5.3E-11 T 26-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RGE_RS14020 ecf3a07dc29cb71f8d423d6b46055c38 261 PANTHER PTHR12905 1 216 2.5E-16 T 26-04-2016 RGE_RS14020 ecf3a07dc29cb71f8d423d6b46055c38 261 PANTHER PTHR12905:SF17 1 216 2.5E-16 T 26-04-2016 RGE_RS14020 ecf3a07dc29cb71f8d423d6b46055c38 261 Gene3D G3DSA:3.60.21.10 4 228 4.7E-38 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS08035 a8ba9d5e5b679398bb7e5b7b4d5103eb 361 Pfam PF13020 Domain of unknown function (DUF3883) 233 317 2.9E-13 T 26-04-2016 IPR024975 Domain of unknown function DUF3883 RGE_RS08035 a8ba9d5e5b679398bb7e5b7b4d5103eb 361 SUPERFAMILY SSF52980 240 324 3.08E-6 T 26-04-2016 IPR011335 Restriction endonuclease type II-like RGE_RS08035 a8ba9d5e5b679398bb7e5b7b4d5103eb 361 Gene3D G3DSA:3.40.1350.10 240 304 3.3E-6 T 26-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 RGE_RS07660 02aeae2691fffec7d00440ca8a2a636d 158 SUPERFAMILY SSF56770 9 154 1.07E-66 T 26-04-2016 RGE_RS07660 02aeae2691fffec7d00440ca8a2a636d 158 PANTHER PTHR11995:SF19 11 156 1.1E-121 T 26-04-2016 RGE_RS07660 02aeae2691fffec7d00440ca8a2a636d 158 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 37 146 1.8E-21 T 26-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RGE_RS07660 02aeae2691fffec7d00440ca8a2a636d 158 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 11 153 1.5E-76 T 26-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RGE_RS07660 02aeae2691fffec7d00440ca8a2a636d 158 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 1 151 42.085 T 26-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RGE_RS07660 02aeae2691fffec7d00440ca8a2a636d 158 PANTHER PTHR11995 11 156 1.1E-121 T 26-04-2016 RGE_RS07660 02aeae2691fffec7d00440ca8a2a636d 158 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 118 134 - T 26-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RGE_RS07660 02aeae2691fffec7d00440ca8a2a636d 158 Gene3D G3DSA:3.40.50.700 21 150 6.7E-32 T 26-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RGE_RS21695 5ae79d6db80c90fcc7d1f5c923ac0ce1 189 PIRSF PIRSF006135 5 189 6.3E-40 T 26-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 RGE_RS21695 5ae79d6db80c90fcc7d1f5c923ac0ce1 189 SUPERFAMILY SSF52540 7 188 8.59E-40 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21695 5ae79d6db80c90fcc7d1f5c923ac0ce1 189 PANTHER PTHR34848 7 189 3.9E-49 T 26-04-2016 RGE_RS21695 5ae79d6db80c90fcc7d1f5c923ac0ce1 189 Gene3D G3DSA:3.40.50.300 7 188 4.0E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21695 5ae79d6db80c90fcc7d1f5c923ac0ce1 189 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 7 186 4.5E-44 T 26-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 561 2.6E-147 T 26-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 SUPERFAMILY SSF52402 234 382 4.19E-86 T 26-04-2016 RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 SUPERFAMILY SSF52402 481 621 4.19E-86 T 26-04-2016 RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 Pfam PF13537 Glutamine amidotransferase domain 48 168 6.1E-48 T 26-04-2016 IPR017932 Glutamine amidotransferase type 2 domain RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 TIGRFAM TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1 1 627 0.0 T 26-04-2016 IPR017539 Exosortase 1 system-associated amidotransferase 1 RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 Gene3D G3DSA:3.60.20.10 1 224 9.5E-75 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 Pfam PF00733 Asparagine synthase 242 626 1.8E-99 T 26-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 PANTHER PTHR11772:SF10 473 637 3.5E-161 T 26-04-2016 RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 PANTHER PTHR11772:SF10 2 384 3.5E-161 T 26-04-2016 RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 PANTHER PTHR11772 473 637 3.5E-161 T 26-04-2016 RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 PANTHER PTHR11772 2 384 3.5E-161 T 26-04-2016 RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 SUPERFAMILY SSF56235 1 226 3.77E-64 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 PIRSF PIRSF001589 1 645 9.4E-178 T 26-04-2016 RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 Gene3D G3DSA:3.40.50.620 225 378 1.5E-85 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS02060 fc783d5305f14b304396762279d53fb2 647 Gene3D G3DSA:3.40.50.620 476 626 1.5E-85 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS15710 65e481253ffbafea97929903de5c4899 326 PANTHER PTHR23024:SF145 81 193 1.0E-25 T 26-04-2016 RGE_RS15710 65e481253ffbafea97929903de5c4899 326 SUPERFAMILY SSF53474 63 319 1.92E-36 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS15710 65e481253ffbafea97929903de5c4899 326 Pfam PF00135 Carboxylesterase family 89 195 1.0E-13 T 26-04-2016 IPR002018 Carboxylesterase, type B RGE_RS15710 65e481253ffbafea97929903de5c4899 326 Gene3D G3DSA:3.40.50.1820 74 320 1.7E-40 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS15710 65e481253ffbafea97929903de5c4899 326 PANTHER PTHR23024 81 193 1.0E-25 T 26-04-2016 RGE_RS14455 51d3c1baa9fc2d1eff13688d8532fb34 307 PANTHER PTHR13903 16 298 6.6E-109 T 26-04-2016 IPR012093 Pirin RGE_RS14455 51d3c1baa9fc2d1eff13688d8532fb34 307 PIRSF PIRSF006232 11 290 3.3E-77 T 26-04-2016 IPR012093 Pirin RGE_RS14455 51d3c1baa9fc2d1eff13688d8532fb34 307 PANTHER PTHR13903:SF4 16 298 6.6E-109 T 26-04-2016 RGE_RS14455 51d3c1baa9fc2d1eff13688d8532fb34 307 Pfam PF05726 Pirin C-terminal cupin domain 181 278 2.4E-17 T 26-04-2016 IPR008778 Pirin, C-terminal domain RGE_RS14455 51d3c1baa9fc2d1eff13688d8532fb34 307 Gene3D G3DSA:2.60.120.10 22 252 5.5E-63 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS14455 51d3c1baa9fc2d1eff13688d8532fb34 307 SUPERFAMILY SSF51182 20 289 8.31E-72 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS14455 51d3c1baa9fc2d1eff13688d8532fb34 307 Pfam PF02678 Pirin 30 129 7.7E-30 T 26-04-2016 IPR003829 Pirin, N-terminal domain RGE_RS17620 3b4040272a03d7e9cbee91695df12140 186 PANTHER PTHR14119 8 183 4.3E-53 T 26-04-2016 RGE_RS17620 3b4040272a03d7e9cbee91695df12140 186 Gene3D G3DSA:3.40.50.850 2 183 2.4E-56 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS17620 3b4040272a03d7e9cbee91695df12140 186 SUPERFAMILY SSF52499 3 181 6.02E-44 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS17620 3b4040272a03d7e9cbee91695df12140 186 Pfam PF00857 Isochorismatase family 9 157 4.0E-27 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS21755 22f7a1cbaa1c54a54073934ef3c869f2 216 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 200 8.7E-29 T 26-04-2016 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 UniPathway: UPA00148 RGE_RS00725 b8537960663ed0e81320a2c864bbe1ea 304 PIRSF PIRSF000105 2 303 1.7E-78 T 26-04-2016 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 RGE_RS00725 b8537960663ed0e81320a2c864bbe1ea 304 Gene3D G3DSA:1.10.1040.10 183 279 1.8E-20 T 26-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RGE_RS00725 b8537960663ed0e81320a2c864bbe1ea 304 SUPERFAMILY SSF51735 3 177 7.65E-48 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS00725 b8537960663ed0e81320a2c864bbe1ea 304 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 181 278 4.2E-20 T 26-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RGE_RS00725 b8537960663ed0e81320a2c864bbe1ea 304 SUPERFAMILY SSF48179 180 287 2.47E-23 T 26-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RGE_RS00725 b8537960663ed0e81320a2c864bbe1ea 304 PANTHER PTHR23309 7 279 2.2E-102 T 26-04-2016 RGE_RS00725 b8537960663ed0e81320a2c864bbe1ea 304 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 6 178 5.3E-51 T 26-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RGE_RS00725 b8537960663ed0e81320a2c864bbe1ea 304 Gene3D G3DSA:3.40.50.720 5 182 4.3E-53 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS01360 2aaf128b40b62bd08d451b1c267ee2c6 178 SUPERFAMILY SSF81342 3 178 3.53E-41 T 26-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RGE_RS01360 2aaf128b40b62bd08d451b1c267ee2c6 178 Gene3D G3DSA:1.20.950.20 84 170 4.3E-4 T 26-04-2016 RGE_RS01360 2aaf128b40b62bd08d451b1c267ee2c6 178 PANTHER PTHR30529 1 178 1.4E-56 T 26-04-2016 RGE_RS01360 2aaf128b40b62bd08d451b1c267ee2c6 178 Pfam PF01292 Prokaryotic cytochrome b561 6 173 2.8E-34 T 26-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RGE_RS21275 8196145b9f4b81ffd4e7f43e2040ebbe 243 Pfam PF01177 Asp/Glu/Hydantoin racemase 31 208 1.1E-9 T 26-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS21275 8196145b9f4b81ffd4e7f43e2040ebbe 243 PANTHER PTHR28047:SF1 1 233 4.0E-61 T 26-04-2016 RGE_RS21275 8196145b9f4b81ffd4e7f43e2040ebbe 243 PANTHER PTHR28047 1 233 4.0E-61 T 26-04-2016 RGE_RS08475 fb36829f0f4d7290403407a4bcc413c3 431 Pfam PF07559 Flagellar basal body protein FlaE 183 312 8.5E-25 T 26-04-2016 IPR011491 Flagellar hook protein FlgE RGE_RS08475 fb36829f0f4d7290403407a4bcc413c3 431 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 413 2.9E-101 T 26-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RGE_RS08475 fb36829f0f4d7290403407a4bcc413c3 431 Pfam PF00460 Flagella basal body rod protein 3 33 1.1E-10 T 26-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RGE_RS08475 fb36829f0f4d7290403407a4bcc413c3 431 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 352 430 5.3E-19 T 26-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RGE_RS08475 fb36829f0f4d7290403407a4bcc413c3 431 SUPERFAMILY SSF117143 80 392 9.81E-79 T 26-04-2016 RGE_RS08475 fb36829f0f4d7290403407a4bcc413c3 431 PANTHER PTHR30435:SF1 309 431 3.2E-94 T 26-04-2016 RGE_RS08475 fb36829f0f4d7290403407a4bcc413c3 431 PANTHER PTHR30435:SF1 1 124 3.2E-94 T 26-04-2016 RGE_RS08475 fb36829f0f4d7290403407a4bcc413c3 431 PANTHER PTHR30435 309 431 3.2E-94 T 26-04-2016 RGE_RS08475 fb36829f0f4d7290403407a4bcc413c3 431 PANTHER PTHR30435 1 124 3.2E-94 T 26-04-2016 RGE_RS08475 fb36829f0f4d7290403407a4bcc413c3 431 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 26-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RGE_RS11090 c0ddcafb174c314448cf49b34f632463 146 Pfam PF00072 Response regulator receiver domain 6 129 1.2E-18 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11090 c0ddcafb174c314448cf49b34f632463 146 PANTHER PTHR26402 4 129 8.5E-29 T 26-04-2016 RGE_RS11090 c0ddcafb174c314448cf49b34f632463 146 SUPERFAMILY SSF52172 2 132 9.25E-31 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11090 c0ddcafb174c314448cf49b34f632463 146 SMART SM00448 4 129 7.3E-25 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11090 c0ddcafb174c314448cf49b34f632463 146 Gene3D G3DSA:3.40.50.2300 4 132 1.4E-32 T 26-04-2016 RGE_RS19095 df865fb041b17c434cf039e6b4a7aeb4 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 144 8.1E-29 T 26-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RGE_RS19095 df865fb041b17c434cf039e6b4a7aeb4 146 PANTHER PTHR30558 9 140 5.8E-31 T 26-04-2016 RGE_RS19095 df865fb041b17c434cf039e6b4a7aeb4 146 PANTHER PTHR30558:SF7 9 140 5.8E-31 T 26-04-2016 RGE_RS12120 441aa5ea8c7170b965b59ff7db528193 196 PANTHER PTHR11080 20 183 4.1E-36 T 26-04-2016 RGE_RS12120 441aa5ea8c7170b965b59ff7db528193 196 Pfam PF00857 Isochorismatase family 23 184 5.9E-31 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS12120 441aa5ea8c7170b965b59ff7db528193 196 Gene3D G3DSA:3.40.50.850 20 186 7.0E-38 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS12120 441aa5ea8c7170b965b59ff7db528193 196 SUPERFAMILY SSF52499 20 186 2.75E-38 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS12120 441aa5ea8c7170b965b59ff7db528193 196 PANTHER PTHR11080:SF39 20 183 4.1E-36 T 26-04-2016 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 PRINTS PR00980 Alanyl-tRNA synthetase signature 283 299 2.0E-31 T 26-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 PRINTS PR00980 Alanyl-tRNA synthetase signature 307 320 2.0E-31 T 26-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 PRINTS PR00980 Alanyl-tRNA synthetase signature 205 216 2.0E-31 T 26-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 PRINTS PR00980 Alanyl-tRNA synthetase signature 74 85 2.0E-31 T 26-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 PRINTS PR00980 Alanyl-tRNA synthetase signature 232 245 2.0E-31 T 26-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 877 197.631 T 26-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 654 696 9.9E-16 T 26-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 SUPERFAMILY SSF55186 553 709 1.57E-49 T 26-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 856 0.0 T 26-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 Gene3D G3DSA:3.30.930.10 1 247 6.2E-126 T 26-04-2016 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 SMART SM00863 654 696 2.2E-19 T 26-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 SUPERFAMILY SSF101353 252 445 1.05E-57 T 26-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 PANTHER PTHR11777:SF9 1 877 0.0 T 26-04-2016 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 SUPERFAMILY SSF55681 2 251 1.74E-110 T 26-04-2016 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 SUPERFAMILY SSF50447 454 553 3.88E-16 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 Pfam PF01411 tRNA synthetases class II (A) 5 556 1.5E-218 T 26-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 Pfam PF02272 DHHA1 domain 801 869 5.6E-10 T 26-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 RGE_RS17015 94ff5c7a265968d411b3c8b079508bef 877 PANTHER PTHR11777 1 877 0.0 T 26-04-2016 RGE_RS15100 1bbf111770c689317b928b2047aa6e5a 214 SUPERFAMILY SSF46689 154 202 2.15E-7 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS15100 1bbf111770c689317b928b2047aa6e5a 214 SMART SM00342 119 199 4.3E-9 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS15100 1bbf111770c689317b928b2047aa6e5a 214 Pfam PF12833 Helix-turn-helix domain 125 201 2.6E-17 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS15100 1bbf111770c689317b928b2047aa6e5a 214 Gene3D G3DSA:1.10.10.60 154 202 1.8E-11 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS21650 a843796b63ad7f05d03a89ae10d8340c 414 PANTHER PTHR10108 319 400 2.6E-98 T 26-04-2016 RGE_RS21650 a843796b63ad7f05d03a89ae10d8340c 414 PANTHER PTHR10108 39 302 2.6E-98 T 26-04-2016 RGE_RS21650 a843796b63ad7f05d03a89ae10d8340c 414 Gene3D G3DSA:3.40.50.150 111 385 5.2E-87 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS21650 a843796b63ad7f05d03a89ae10d8340c 414 PIRSF PIRSF003085 6 402 8.7E-118 T 26-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 RGE_RS21650 a843796b63ad7f05d03a89ae10d8340c 414 SUPERFAMILY SSF53335 119 387 2.28E-74 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS21650 a843796b63ad7f05d03a89ae10d8340c 414 PANTHER PTHR10108:SF743 319 400 2.6E-98 T 26-04-2016 RGE_RS21650 a843796b63ad7f05d03a89ae10d8340c 414 PANTHER PTHR10108:SF743 39 302 2.6E-98 T 26-04-2016 RGE_RS21650 a843796b63ad7f05d03a89ae10d8340c 414 Pfam PF02353 Mycolic acid cyclopropane synthetase 110 382 5.4E-90 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 SMART SM00091 235 302 1.9E-8 T 26-04-2016 IPR000014 PAS domain RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 Pfam PF00563 EAL domain 548 784 3.2E-70 T 26-04-2016 IPR001633 EAL domain RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 Pfam PF08448 PAS fold 245 352 1.8E-13 T 26-04-2016 IPR013656 PAS fold-4 RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 SMART SM00267 350 532 3.0E-61 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 360 531 1.2E-37 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 Gene3D G3DSA:3.20.20.450 545 795 3.2E-92 T 26-04-2016 IPR001633 EAL domain RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 PANTHER PTHR10799:SF710 395 642 6.7E-75 T 26-04-2016 RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 SUPERFAMILY SSF55073 366 534 2.04E-45 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 PANTHER PTHR10799 395 642 6.7E-75 T 26-04-2016 RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 SUPERFAMILY SSF141868 547 795 2.22E-80 T 26-04-2016 IPR001633 EAL domain RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 Gene3D G3DSA:3.30.70.270 363 540 5.7E-57 T 26-04-2016 RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 233 357 1.1E-16 T 26-04-2016 IPR000014 PAS domain RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 Gene3D G3DSA:3.30.450.20 245 348 1.5E-22 T 26-04-2016 RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 Pfam PF00990 Diguanylate cyclase, GGDEF domain 361 527 1.8E-44 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 SMART SM00052 542 789 1.1E-98 T 26-04-2016 IPR001633 EAL domain RGE_RS07800 874b18789d7750fee254a0d5502abd7e 800 SUPERFAMILY SSF55785 230 348 9.95E-22 T 26-04-2016 IPR000014 PAS domain RGE_RS14290 4cd963c9a8ca8324d60fea4ef56ce7c1 70 SMART SM00357 5 69 2.6E-30 T 26-04-2016 IPR011129 Cold shock protein GO:0003676 RGE_RS14290 4cd963c9a8ca8324d60fea4ef56ce7c1 70 PRINTS PR00050 Cold shock protein signature 6 21 8.9E-16 T 26-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RGE_RS14290 4cd963c9a8ca8324d60fea4ef56ce7c1 70 PRINTS PR00050 Cold shock protein signature 42 60 8.9E-16 T 26-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RGE_RS14290 4cd963c9a8ca8324d60fea4ef56ce7c1 70 PRINTS PR00050 Cold shock protein signature 27 36 8.9E-16 T 26-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RGE_RS14290 4cd963c9a8ca8324d60fea4ef56ce7c1 70 PANTHER PTHR11544 4 70 1.0E-33 T 26-04-2016 RGE_RS14290 4cd963c9a8ca8324d60fea4ef56ce7c1 70 PIRSF PIRSF002599 1 70 3.7E-24 T 26-04-2016 IPR012156 Cold shock, CspA GO:0003676 RGE_RS14290 4cd963c9a8ca8324d60fea4ef56ce7c1 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.8E-30 T 26-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RGE_RS14290 4cd963c9a8ca8324d60fea4ef56ce7c1 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 26-04-2016 IPR019844 Cold-shock conserved site RGE_RS14290 4cd963c9a8ca8324d60fea4ef56ce7c1 70 Gene3D G3DSA:2.40.50.140 4 69 4.3E-30 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS14290 4cd963c9a8ca8324d60fea4ef56ce7c1 70 SUPERFAMILY SSF50249 3 69 1.52E-25 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS03280 3b79cf7108a5989e96ae7930ee2ad3e0 160 PANTHER PTHR30154:SF27 1 156 2.6E-44 T 26-04-2016 RGE_RS03280 3b79cf7108a5989e96ae7930ee2ad3e0 160 PANTHER PTHR30154 1 156 2.6E-44 T 26-04-2016 RGE_RS03280 3b79cf7108a5989e96ae7930ee2ad3e0 160 Gene3D G3DSA:1.10.10.10 1 57 5.3E-6 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09270 6e1ea36f62a20c18b8ef83e641ac57bd 124 Pfam PF03814 Potassium-transporting ATPase A subunit 13 101 6.2E-14 T 26-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RGE_RS09270 6e1ea36f62a20c18b8ef83e641ac57bd 124 PANTHER PTHR30607 2 100 2.5E-17 T 26-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RGE_RS00510 42600e3e4e1a2b1b9fd4f1fecc0bbb2d 188 PANTHER PTHR30212:SF2 1 183 5.4E-40 T 26-04-2016 RGE_RS00510 42600e3e4e1a2b1b9fd4f1fecc0bbb2d 188 Pfam PF03473 MOSC domain 49 166 2.1E-16 T 26-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RGE_RS00510 42600e3e4e1a2b1b9fd4f1fecc0bbb2d 188 Gene3D G3DSA:2.40.33.20 1 185 3.1E-60 T 26-04-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like RGE_RS00510 42600e3e4e1a2b1b9fd4f1fecc0bbb2d 188 SUPERFAMILY SSF50800 1 185 8.89E-52 T 26-04-2016 IPR011037 Pyruvate kinase-like, insert domain RGE_RS00510 42600e3e4e1a2b1b9fd4f1fecc0bbb2d 188 PANTHER PTHR30212 1 183 5.4E-40 T 26-04-2016 RGE_RS22795 88e1bf07631d50687ea41946697238f2 226 PANTHER PTHR19278:SF36 12 226 2.6E-87 T 26-04-2016 RGE_RS22795 88e1bf07631d50687ea41946697238f2 226 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 20 198 3.7E-50 T 26-04-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS22795 88e1bf07631d50687ea41946697238f2 226 Gene3D G3DSA:3.40.50.2020 13 225 7.7E-74 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS22795 88e1bf07631d50687ea41946697238f2 226 SUPERFAMILY SSF53271 10 202 2.02E-42 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS22795 88e1bf07631d50687ea41946697238f2 226 PANTHER PTHR19278 12 226 2.6E-87 T 26-04-2016 RGE_RS22795 88e1bf07631d50687ea41946697238f2 226 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 226 32.241 T 26-04-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 RGE_RS22795 88e1bf07631d50687ea41946697238f2 226 Pfam PF00156 Phosphoribosyl transferase domain 48 175 2.2E-16 T 26-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 Gene3D G3DSA:3.80.30.20 409 667 5.2E-48 T 26-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 PANTHER PTHR32331:SF3 287 758 0.0 T 26-04-2016 RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 PANTHER PTHR32331:SF3 9 262 0.0 T 26-04-2016 RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 Pfam PF11842 Domain of unknown function (DUF3362) 628 738 1.1E-55 T 26-04-2016 IPR024560 Uncharacterised protein family UPF0313, C-terminal RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 PANTHER PTHR32331 287 758 0.0 T 26-04-2016 RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 PANTHER PTHR32331 9 262 0.0 T 26-04-2016 RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 SMART SM00729 411 663 3.0E-5 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 415 435 - T 26-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 Pfam PF04055 Radical SAM superfamily 415 619 6.7E-19 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 29 732 48.683 T 26-04-2016 IPR022946 Uncharacterised protein family UPF0313 RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 30 680 2.6E-255 T 26-04-2016 IPR022946 Uncharacterised protein family UPF0313 RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 SUPERFAMILY SSF102114 378 474 1.7E-11 T 26-04-2016 RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 SUPERFAMILY SSF102114 504 652 1.7E-11 T 26-04-2016 RGE_RS18965 e67025f1efa6829890a2772dece91e26 812 Pfam PF08497 Radical SAM N-terminal 30 414 3.5E-142 T 26-04-2016 IPR013704 Uncharacterised protein family UPF0313, N-terminal RGE_RS06075 e25d0767b60f176f54cb5152c7c65f25 153 Gene3D G3DSA:3.10.180.10 3 145 5.4E-16 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS06075 e25d0767b60f176f54cb5152c7c65f25 153 PANTHER PTHR21366 2 150 6.5E-37 T 26-04-2016 RGE_RS06075 e25d0767b60f176f54cb5152c7c65f25 153 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 121 4.2E-23 T 26-04-2016 RGE_RS06075 e25d0767b60f176f54cb5152c7c65f25 153 PANTHER PTHR21366:SF0 2 150 6.5E-37 T 26-04-2016 RGE_RS06075 e25d0767b60f176f54cb5152c7c65f25 153 SUPERFAMILY SSF54593 3 145 9.49E-17 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS20750 75d13678bc1962dce1abb3daae7e0cbf 313 SUPERFAMILY SSF48576 5 312 1.09E-98 T 26-04-2016 IPR008949 Isoprenoid synthase domain RGE_RS20750 75d13678bc1962dce1abb3daae7e0cbf 313 Pfam PF00348 Polyprenyl synthetase 22 263 2.2E-75 T 26-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RGE_RS20750 75d13678bc1962dce1abb3daae7e0cbf 313 PANTHER PTHR12001 5 313 1.2E-114 T 26-04-2016 IPR017446 Polyprenyl synthetase-related RGE_RS20750 75d13678bc1962dce1abb3daae7e0cbf 313 Gene3D G3DSA:1.10.600.10 3 312 2.2E-101 T 26-04-2016 IPR008949 Isoprenoid synthase domain RGE_RS20750 75d13678bc1962dce1abb3daae7e0cbf 313 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 194 206 - T 26-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RGE_RS20750 75d13678bc1962dce1abb3daae7e0cbf 313 PANTHER PTHR12001:SF47 5 313 1.2E-114 T 26-04-2016 RGE_RS20750 75d13678bc1962dce1abb3daae7e0cbf 313 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 72 86 - T 26-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RGE_RS15115 b5758f87a0e1ca3c676c9ec7f1495e7e 163 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 21 79 5.1E-30 T 26-04-2016 IPR012909 PHA accumulation regulator DNA-binding, N-terminal RGE_RS15115 b5758f87a0e1ca3c676c9ec7f1495e7e 163 Pfam PF05233 PHB accumulation regulatory domain 84 122 7.4E-17 T 26-04-2016 IPR007897 PHB accumulation regulatory RGE_RS15115 b5758f87a0e1ca3c676c9ec7f1495e7e 163 Pfam PF05233 PHB accumulation regulatory domain 130 152 2.5E-5 T 26-04-2016 IPR007897 PHB accumulation regulatory RGE_RS15115 b5758f87a0e1ca3c676c9ec7f1495e7e 163 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 20 123 1.3E-43 T 26-04-2016 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR RGE_RS21015 249ee599af28b783ef14edb3630710a7 114 PIRSF PIRSF005790 1 105 2.1E-35 T 26-04-2016 IPR004893 Nitrogen fixation protein NifW GO:0009399 RGE_RS21015 249ee599af28b783ef14edb3630710a7 114 Pfam PF03206 Nitrogen fixation protein NifW 4 102 5.9E-37 T 26-04-2016 IPR004893 Nitrogen fixation protein NifW GO:0009399 RGE_RS21015 249ee599af28b783ef14edb3630710a7 114 Hamap MF_00529 Nitrogenase-stabilizing/protective protein NifW [nifW]. 2 103 22.352 T 26-04-2016 IPR004893 Nitrogen fixation protein NifW GO:0009399 RGE_RS15930 8c86bd5574a844152340899437fc36b3 368 SUPERFAMILY SSF111369 55 269 4.32E-45 T 26-04-2016 RGE_RS15930 8c86bd5574a844152340899437fc36b3 368 Gene3D G3DSA:2.40.50.100 65 98 1.5E-14 T 26-04-2016 RGE_RS15930 8c86bd5574a844152340899437fc36b3 368 Gene3D G3DSA:2.40.50.100 159 190 1.5E-14 T 26-04-2016 RGE_RS15930 8c86bd5574a844152340899437fc36b3 368 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 349 1.8E-77 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS15930 8c86bd5574a844152340899437fc36b3 368 PANTHER PTHR30469 1 361 1.4E-83 T 26-04-2016 RGE_RS15930 8c86bd5574a844152340899437fc36b3 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 53 265 2.0E-29 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS15930 8c86bd5574a844152340899437fc36b3 368 PANTHER PTHR30469:SF11 1 361 1.4E-83 T 26-04-2016 RGE_RS12580 a0027f9069c588e08d5b4ad9c0f752e1 261 Pfam PF04972 BON domain 27 68 3.2E-4 T 26-04-2016 IPR007055 BON domain RGE_RS12580 a0027f9069c588e08d5b4ad9c0f752e1 261 SUPERFAMILY SSF103088 148 256 5.23E-33 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS12580 a0027f9069c588e08d5b4ad9c0f752e1 261 PANTHER PTHR30128 149 256 1.3E-33 T 26-04-2016 RGE_RS12580 a0027f9069c588e08d5b4ad9c0f752e1 261 PRINTS PR01021 OMPA domain signature 203 219 4.4E-9 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS12580 a0027f9069c588e08d5b4ad9c0f752e1 261 PRINTS PR01021 OMPA domain signature 188 203 4.4E-9 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS12580 a0027f9069c588e08d5b4ad9c0f752e1 261 PRINTS PR01021 OMPA domain signature 158 180 4.4E-9 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS12580 a0027f9069c588e08d5b4ad9c0f752e1 261 Pfam PF00691 OmpA family 158 252 1.6E-23 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS12580 a0027f9069c588e08d5b4ad9c0f752e1 261 Gene3D G3DSA:3.30.1330.60 153 259 2.9E-35 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS19980 c1ffbceb601b0d968016ef898f244c04 305 Pfam PF01479 S4 domain 13 59 3.2E-8 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS19980 c1ffbceb601b0d968016ef898f244c04 305 Pfam PF00849 RNA pseudouridylate synthase 88 241 5.5E-31 T 26-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS19980 c1ffbceb601b0d968016ef898f244c04 305 SMART SM00363 13 72 6.3E-8 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS19980 c1ffbceb601b0d968016ef898f244c04 305 Gene3D G3DSA:3.10.290.10 13 61 7.7E-7 T 26-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RGE_RS19980 c1ffbceb601b0d968016ef898f244c04 305 SUPERFAMILY SSF55120 77 302 2.4E-64 T 26-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS19980 c1ffbceb601b0d968016ef898f244c04 305 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 8 303 4.5E-80 T 26-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS19980 c1ffbceb601b0d968016ef898f244c04 305 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 127 141 - T 26-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS19980 c1ffbceb601b0d968016ef898f244c04 305 SUPERFAMILY SSF55174 12 63 6.48E-9 T 26-04-2016 RGE_RS19980 c1ffbceb601b0d968016ef898f244c04 305 PANTHER PTHR11079:SF84 1 302 9.3E-109 T 26-04-2016 RGE_RS19980 c1ffbceb601b0d968016ef898f244c04 305 PANTHER PTHR11079 1 302 9.3E-109 T 26-04-2016 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 PANTHER PTHR11985 8 505 3.6E-192 T 26-04-2016 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 21 33 5.1E-31 T 26-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 34 44 5.1E-31 T 26-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 339 345 5.1E-31 T 26-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 50 62 5.1E-31 T 26-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 371 383 5.1E-31 T 26-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 95 107 5.1E-31 T 26-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 428 506 2.8E-13 T 26-04-2016 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 Gene3D G3DSA:3.50.50.60 377 391 2.1E-44 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 Gene3D G3DSA:3.50.50.60 17 310 2.1E-44 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 376 386 - T 26-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 SUPERFAMILY SSF51905 21 349 9.07E-42 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS01135 8958abc5c56d9cfb2c4a987a8d40777f 525 Pfam PF01266 FAD dependent oxidoreductase 22 382 4.0E-53 T 26-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RGE_RS18760 1eb0df831caef0ff1d9922581eb4326e 162 PANTHER PTHR30399 2 162 6.7E-79 T 26-04-2016 RGE_RS18760 1eb0df831caef0ff1d9922581eb4326e 162 Pfam PF01863 Protein of unknown function DUF45 94 153 2.0E-10 T 26-04-2016 IPR002725 Protein of unknown function DUF45 RGE_RS18760 1eb0df831caef0ff1d9922581eb4326e 162 PANTHER PTHR30399:SF4 2 162 6.7E-79 T 26-04-2016 RGE_RS01645 3c72b2a3215e29284c4f7c109b224ac9 138 SUPERFAMILY SSF54686 1 134 2.75E-52 T 26-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RGE_RS01645 3c72b2a3215e29284c4f7c109b224ac9 138 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 37.588 T 26-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RGE_RS01645 3c72b2a3215e29284c4f7c109b224ac9 138 PANTHER PTHR12220 1 136 7.8E-70 T 26-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RGE_RS01645 3c72b2a3215e29284c4f7c109b224ac9 138 PRINTS PR00060 Ribosomal protein L16 signature 88 117 1.6E-39 T 26-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RGE_RS01645 3c72b2a3215e29284c4f7c109b224ac9 138 PRINTS PR00060 Ribosomal protein L16 signature 24 36 1.6E-39 T 26-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RGE_RS01645 3c72b2a3215e29284c4f7c109b224ac9 138 PRINTS PR00060 Ribosomal protein L16 signature 42 53 1.6E-39 T 26-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RGE_RS01645 3c72b2a3215e29284c4f7c109b224ac9 138 PRINTS PR00060 Ribosomal protein L16 signature 58 87 1.6E-39 T 26-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RGE_RS01645 3c72b2a3215e29284c4f7c109b224ac9 138 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.1E-45 T 26-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RGE_RS01645 3c72b2a3215e29284c4f7c109b224ac9 138 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 1.6E-57 T 26-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RGE_RS01645 3c72b2a3215e29284c4f7c109b224ac9 138 Gene3D G3DSA:3.90.1170.10 22 135 1.8E-50 T 26-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RGE_RS19015 4a54e63e37bc282feab5b353d9789424 416 PANTHER PTHR11680 9 415 1.9E-258 T 26-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RGE_RS19015 4a54e63e37bc282feab5b353d9789424 416 PIRSF PIRSF000412 2 416 3.4E-173 T 26-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RGE_RS19015 4a54e63e37bc282feab5b353d9789424 416 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 26-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RGE_RS19015 4a54e63e37bc282feab5b353d9789424 416 Gene3D G3DSA:3.90.1150.10 285 415 6.6E-58 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS19015 4a54e63e37bc282feab5b353d9789424 416 SUPERFAMILY SSF53383 6 415 5.7E-185 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS19015 4a54e63e37bc282feab5b353d9789424 416 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 8 416 53.306 T 26-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RGE_RS19015 4a54e63e37bc282feab5b353d9789424 416 Gene3D G3DSA:3.40.640.10 38 284 2.4E-107 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS19015 4a54e63e37bc282feab5b353d9789424 416 Pfam PF00464 Serine hydroxymethyltransferase 10 385 5.4E-179 T 26-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RGE_RS07565 1e87d06a6c531beb7752f757e9ee06f4 163 Gene3D G3DSA:3.40.50.270 5 159 1.3E-51 T 26-04-2016 RGE_RS07565 1e87d06a6c531beb7752f757e9ee06f4 163 PANTHER PTHR11717:SF7 5 158 1.4E-52 T 26-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RGE_RS07565 1e87d06a6c531beb7752f757e9ee06f4 163 SMART SM00226 6 156 1.4E-48 T 26-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RGE_RS07565 1e87d06a6c531beb7752f757e9ee06f4 163 PANTHER PTHR11717 5 158 1.4E-52 T 26-04-2016 RGE_RS07565 1e87d06a6c531beb7752f757e9ee06f4 163 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 8 25 1.7E-21 T 26-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RGE_RS07565 1e87d06a6c531beb7752f757e9ee06f4 163 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 128 143 1.7E-21 T 26-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RGE_RS07565 1e87d06a6c531beb7752f757e9ee06f4 163 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 85 100 1.7E-21 T 26-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RGE_RS07565 1e87d06a6c531beb7752f757e9ee06f4 163 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 51 67 1.7E-21 T 26-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RGE_RS07565 1e87d06a6c531beb7752f757e9ee06f4 163 SUPERFAMILY SSF52788 4 157 1.83E-49 T 26-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RGE_RS07565 1e87d06a6c531beb7752f757e9ee06f4 163 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 8 152 1.3E-38 T 26-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RGE_RS19130 262f7b3f970824e1efb272510f1c1a29 234 Pfam PF00005 ABC transporter 15 157 6.4E-31 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS19130 262f7b3f970824e1efb272510f1c1a29 234 TIGRFAM TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system 1 233 1.9E-94 T 26-04-2016 IPR022467 ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system RGE_RS19130 262f7b3f970824e1efb272510f1c1a29 234 SMART SM00382 23 206 2.6E-10 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS19130 262f7b3f970824e1efb272510f1c1a29 234 SUPERFAMILY SSF52540 2 216 6.45E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19130 262f7b3f970824e1efb272510f1c1a29 234 Gene3D G3DSA:3.40.50.300 1 217 7.1E-65 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19130 262f7b3f970824e1efb272510f1c1a29 234 PANTHER PTHR24220 1 213 2.4E-75 T 26-04-2016 RGE_RS19130 262f7b3f970824e1efb272510f1c1a29 234 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS22555 1971ce7410b167b98e76811c13a54581 337 Gene3D G3DSA:3.40.190.10 178 302 1.7E-30 T 26-04-2016 RGE_RS22555 1971ce7410b167b98e76811c13a54581 337 Gene3D G3DSA:3.40.190.10 28 176 1.1E-52 T 26-04-2016 RGE_RS22555 1971ce7410b167b98e76811c13a54581 337 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 20 333 2.6E-155 T 26-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 RGE_RS22555 1971ce7410b167b98e76811c13a54581 337 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 153 161 - T 26-04-2016 IPR000957 Sulphate/thiosulphate-binding, conserved site GO:0008271|GO:0008272|GO:0030288 RGE_RS22555 1971ce7410b167b98e76811c13a54581 337 PANTHER PTHR30368:SF2 13 337 5.9E-191 T 26-04-2016 RGE_RS22555 1971ce7410b167b98e76811c13a54581 337 SUPERFAMILY SSF53850 27 334 2.43E-92 T 26-04-2016 RGE_RS22555 1971ce7410b167b98e76811c13a54581 337 PANTHER PTHR30368 13 337 5.9E-191 T 26-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 RGE_RS22555 1971ce7410b167b98e76811c13a54581 337 ProSitePatterns PS00401 Prokaryotic sulfate-binding proteins signature 1. 55 67 - T 26-04-2016 IPR000957 Sulphate/thiosulphate-binding, conserved site GO:0008271|GO:0008272|GO:0030288 RGE_RS22555 1971ce7410b167b98e76811c13a54581 337 Pfam PF13531 Bacterial extracellular solute-binding protein 48 287 7.6E-47 T 26-04-2016 RGE_RS03640 dd254d9e45004fcea3c38ca8c4850842 135 PIRSF PIRSF005610 3 124 3.2E-21 T 26-04-2016 IPR007360 Invasion gene expression up-regulator, SirB RGE_RS03640 dd254d9e45004fcea3c38ca8c4850842 135 Pfam PF04247 Invasion gene expression up-regulator, SirB 7 126 1.5E-34 T 26-04-2016 IPR007360 Invasion gene expression up-regulator, SirB RGE_RS03640 dd254d9e45004fcea3c38ca8c4850842 135 PANTHER PTHR39594 1 130 2.4E-15 T 26-04-2016 RGE_RS21375 1416fa2bcf3a89179ee3cc851279d132 235 PANTHER PTHR24220:SF578 6 233 5.9E-117 T 26-04-2016 RGE_RS21375 1416fa2bcf3a89179ee3cc851279d132 235 SUPERFAMILY SSF52540 4 228 3.64E-73 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21375 1416fa2bcf3a89179ee3cc851279d132 235 SMART SM00382 33 221 2.0E-14 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21375 1416fa2bcf3a89179ee3cc851279d132 235 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS21375 1416fa2bcf3a89179ee3cc851279d132 235 Pfam PF00005 ABC transporter 24 172 4.1E-31 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS21375 1416fa2bcf3a89179ee3cc851279d132 235 Gene3D G3DSA:3.40.50.300 3 224 2.2E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS21375 1416fa2bcf3a89179ee3cc851279d132 235 PANTHER PTHR24220 6 233 5.9E-117 T 26-04-2016 RGE_RS04425 3ab33dc28fd8cb50b3804a139412673d 333 Pfam PF06580 Histidine kinase 141 220 1.0E-20 T 26-04-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 RGE_RS04425 3ab33dc28fd8cb50b3804a139412673d 333 PANTHER PTHR34220 13 333 5.2E-55 T 26-04-2016 RGE_RS04425 3ab33dc28fd8cb50b3804a139412673d 333 PRINTS PR00344 Bacterial sensor protein C-terminal signature 292 310 1.1E-5 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04425 3ab33dc28fd8cb50b3804a139412673d 333 PRINTS PR00344 Bacterial sensor protein C-terminal signature 319 332 1.1E-5 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04425 3ab33dc28fd8cb50b3804a139412673d 333 PRINTS PR00344 Bacterial sensor protein C-terminal signature 272 286 1.1E-5 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04425 3ab33dc28fd8cb50b3804a139412673d 333 SUPERFAMILY SSF55874 198 332 3.67E-18 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS04425 3ab33dc28fd8cb50b3804a139412673d 333 Gene3D G3DSA:3.30.565.10 195 332 1.2E-12 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22000 cedc2c83ddc26f4b5103bd49d3a8702f 369 Gene3D G3DSA:3.30.565.10 178 329 1.1E-10 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS22000 cedc2c83ddc26f4b5103bd49d3a8702f 369 SUPERFAMILY SSF55874 178 328 1.2E-9 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS00680 6f7b835442f0a8511ff201d35bea7c85 220 Gene3D G3DSA:3.40.810.20 4 210 2.4E-82 T 26-04-2016 RGE_RS00680 6f7b835442f0a8511ff201d35bea7c85 220 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 43 51 - T 26-04-2016 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 RGE_RS00680 6f7b835442f0a8511ff201d35bea7c85 220 SUPERFAMILY SSF100950 2 213 1.45E-67 T 26-04-2016 RGE_RS00680 6f7b835442f0a8511ff201d35bea7c85 220 Pfam PF01144 Coenzyme A transferase 9 196 4.4E-35 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS00680 6f7b835442f0a8511ff201d35bea7c85 220 PANTHER PTHR13707 1 218 2.1E-111 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS00680 6f7b835442f0a8511ff201d35bea7c85 220 SMART SM00882 5 199 2.5E-65 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS00680 6f7b835442f0a8511ff201d35bea7c85 220 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 204 3.6E-90 T 26-04-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 RGE_RS02085 f68ffc40fe18583cd0cfc86ca1dacd9a 404 Gene3D G3DSA:3.20.110.10 181 234 5.3E-5 T 26-04-2016 IPR027291 Glycoside hydrolase 38/57, N-terminal domain RGE_RS02085 f68ffc40fe18583cd0cfc86ca1dacd9a 404 Gene3D G3DSA:3.20.110.10 109 139 5.3E-5 T 26-04-2016 IPR027291 Glycoside hydrolase 38/57, N-terminal domain RGE_RS02085 f68ffc40fe18583cd0cfc86ca1dacd9a 404 SUPERFAMILY SSF88713 109 137 7.04E-6 T 26-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RGE_RS02085 f68ffc40fe18583cd0cfc86ca1dacd9a 404 SUPERFAMILY SSF88713 180 364 7.04E-6 T 26-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RGE_RS04850 806555c6e862b94747b3f1a2f63b5e0a 217 PANTHER PTHR13707:SF39 4 216 1.6E-89 T 26-04-2016 RGE_RS04850 806555c6e862b94747b3f1a2f63b5e0a 217 PANTHER PTHR13707 4 216 1.6E-89 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS04850 806555c6e862b94747b3f1a2f63b5e0a 217 Gene3D G3DSA:3.40.1080.10 1 213 2.7E-79 T 26-04-2016 RGE_RS04850 806555c6e862b94747b3f1a2f63b5e0a 217 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 5 215 4.1E-70 T 26-04-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 RGE_RS04850 806555c6e862b94747b3f1a2f63b5e0a 217 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 16 31 - T 26-04-2016 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 RGE_RS04850 806555c6e862b94747b3f1a2f63b5e0a 217 SMART SM00882 4 215 1.3E-68 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS04850 806555c6e862b94747b3f1a2f63b5e0a 217 Pfam PF01144 Coenzyme A transferase 5 214 1.9E-63 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS04850 806555c6e862b94747b3f1a2f63b5e0a 217 SUPERFAMILY SSF100950 2 214 9.07E-74 T 26-04-2016 RGE_RS07305 f6e3c5eca36e3dbe2f5481039d33d514 410 PANTHER PTHR11986:SF18 15 406 6.4E-209 T 26-04-2016 IPR010164 Ornithine aminotransferase GO:0008483|GO:0030170 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922|UniPathway: UPA00098 RGE_RS07305 f6e3c5eca36e3dbe2f5481039d33d514 410 PANTHER PTHR11986 15 406 6.4E-209 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS07305 f6e3c5eca36e3dbe2f5481039d33d514 410 Gene3D G3DSA:3.40.640.10 65 298 2.6E-85 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS07305 f6e3c5eca36e3dbe2f5481039d33d514 410 Pfam PF00202 Aminotransferase class-III 22 405 4.3E-115 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS07305 f6e3c5eca36e3dbe2f5481039d33d514 410 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 230 267 - T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS07305 f6e3c5eca36e3dbe2f5481039d33d514 410 TIGRFAM TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase 15 405 7.3E-156 T 26-04-2016 IPR010164 Ornithine aminotransferase GO:0008483|GO:0030170 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922|UniPathway: UPA00098 RGE_RS07305 f6e3c5eca36e3dbe2f5481039d33d514 410 Gene3D G3DSA:3.90.1150.10 299 407 1.5E-40 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS07305 f6e3c5eca36e3dbe2f5481039d33d514 410 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 19 406 37.405 T 26-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RGE_RS07305 f6e3c5eca36e3dbe2f5481039d33d514 410 SUPERFAMILY SSF53383 10 406 1.28E-122 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 Pfam PF16326 ABC transporter C-terminal domain 590 650 1.4E-8 T 26-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 Pfam PF12848 ABC transporter 217 292 1.2E-29 T 26-04-2016 IPR032781 ABC-transporter extension domain RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 PANTHER PTHR19211:SF49 2 560 1.2E-277 T 26-04-2016 RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 SMART SM00382 337 508 1.1E-10 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 SMART SM00382 26 222 3.3E-9 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 ProSitePatterns PS00211 ABC transporters family signature. 435 449 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 Gene3D G3DSA:3.40.50.300 310 521 7.0E-42 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 Gene3D G3DSA:3.40.50.300 1 266 2.1E-42 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 SUPERFAMILY SSF52540 119 254 1.0E-44 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 SUPERFAMILY SSF52540 2 92 1.0E-44 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 SUPERFAMILY SSF52540 299 517 4.39E-45 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 PANTHER PTHR19211 2 560 1.2E-277 T 26-04-2016 RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 Pfam PF00005 ABC transporter 329 463 1.7E-21 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS11700 da16a2a6c42f6c4d61f8ff6f204f460f 660 Pfam PF00005 ABC transporter 17 178 5.7E-22 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS18110 4d7b6efa55442180712aa6b1f35d20dc 277 Gene3D G3DSA:3.40.50.1220 202 260 5.2E-16 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS18110 4d7b6efa55442180712aa6b1f35d20dc 277 Gene3D G3DSA:3.40.50.1220 5 34 5.2E-16 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS18110 4d7b6efa55442180712aa6b1f35d20dc 277 Gene3D G3DSA:3.40.50.1220 92 132 5.2E-16 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS18110 4d7b6efa55442180712aa6b1f35d20dc 277 Pfam PF02146 Sir2 family 24 188 4.2E-20 T 26-04-2016 IPR003000 Sirtuin family GO:0070403 RGE_RS18110 4d7b6efa55442180712aa6b1f35d20dc 277 PANTHER PTHR11085:SF10 5 217 1.8E-65 T 26-04-2016 RGE_RS18110 4d7b6efa55442180712aa6b1f35d20dc 277 PANTHER PTHR11085 5 217 1.8E-65 T 26-04-2016 IPR003000 Sirtuin family GO:0070403 RGE_RS18110 4d7b6efa55442180712aa6b1f35d20dc 277 SUPERFAMILY SSF52467 5 274 1.31E-64 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS18110 4d7b6efa55442180712aa6b1f35d20dc 277 Gene3D G3DSA:3.30.1600.10 133 187 6.3E-22 T 26-04-2016 IPR026591 Sirtuin family, catalytic core small domain RGE_RS18110 4d7b6efa55442180712aa6b1f35d20dc 277 Gene3D G3DSA:3.30.1600.10 35 80 6.3E-22 T 26-04-2016 IPR026591 Sirtuin family, catalytic core small domain RGE_RS09610 3fbdc02007a1c0f31bcdcaeaa303179a 150 Pfam PF03748 Flagellar basal body-associated protein FliL 51 149 2.2E-8 T 26-04-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 RGE_RS21225 af9079bb320146cf7bd84a274c210902 595 PIRSF PIRSF000719 6 584 9.3E-249 T 26-04-2016 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 RGE_RS21225 af9079bb320146cf7bd84a274c210902 595 PANTHER PTHR39559 5 585 2.7E-154 T 26-04-2016 RGE_RS21225 af9079bb320146cf7bd84a274c210902 595 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 14 579 0.0 T 26-04-2016 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 RGE_RS21225 af9079bb320146cf7bd84a274c210902 595 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 6 579 45.561 T 26-04-2016 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 RGE_RS21225 af9079bb320146cf7bd84a274c210902 595 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 14 574 1.4E-264 T 26-04-2016 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 RGE_RS13880 547ae9809cbcf43046e079c587df3579 376 Pfam PF02405 Permease MlaE 161 369 1.8E-62 T 26-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RGE_RS13880 547ae9809cbcf43046e079c587df3579 376 PANTHER PTHR30188 118 376 2.5E-73 T 26-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RGE_RS13880 547ae9809cbcf43046e079c587df3579 376 PANTHER PTHR30188:SF3 118 376 2.5E-73 T 26-04-2016 RGE_RS20710 52df8645516d42bc745d1d2356b4e68f 188 PANTHER PTHR30108:SF10 4 187 1.5E-73 T 26-04-2016 RGE_RS20710 52df8645516d42bc745d1d2356b4e68f 188 SUPERFAMILY SSF52507 5 187 1.83E-59 T 26-04-2016 IPR003382 Flavoprotein GO:0003824 RGE_RS20710 52df8645516d42bc745d1d2356b4e68f 188 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 4 187 35.464 T 26-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 RGE_RS20710 52df8645516d42bc745d1d2356b4e68f 188 PANTHER PTHR30108 4 187 1.5E-73 T 26-04-2016 RGE_RS20710 52df8645516d42bc745d1d2356b4e68f 188 Gene3D G3DSA:3.40.50.1950 5 187 5.8E-73 T 26-04-2016 IPR003382 Flavoprotein GO:0003824 RGE_RS20710 52df8645516d42bc745d1d2356b4e68f 188 Pfam PF02441 Flavoprotein 5 128 4.9E-27 T 26-04-2016 IPR003382 Flavoprotein GO:0003824 RGE_RS20710 52df8645516d42bc745d1d2356b4e68f 188 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 5 185 2.0E-67 T 26-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 RGE_RS21040 fa2442ed71ec4e91d0cd1b78bedb7634 151 SUPERFAMILY SSF47240 3 147 5.04E-29 T 26-04-2016 IPR009078 Ferritin-like superfamily RGE_RS21040 fa2442ed71ec4e91d0cd1b78bedb7634 151 Pfam PF13668 Ferritin-like domain 7 145 9.8E-6 T 26-04-2016 RGE_RS21040 fa2442ed71ec4e91d0cd1b78bedb7634 151 Gene3D G3DSA:1.20.1260.10 1 146 3.4E-37 T 26-04-2016 IPR012347 Ferritin-related RGE_RS04585 23f13ed0ad3c487c7d3b0655464019ce 221 PANTHER PTHR30614 16 221 1.6E-91 T 26-04-2016 RGE_RS04585 23f13ed0ad3c487c7d3b0655464019ce 221 PANTHER PTHR30614:SF1 16 221 1.6E-91 T 26-04-2016 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM GO:0006865|GO:0016021|GO:0043190 RGE_RS04585 23f13ed0ad3c487c7d3b0655464019ce 221 Gene3D G3DSA:1.10.3720.10 17 217 4.1E-43 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS04585 23f13ed0ad3c487c7d3b0655464019ce 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 112 6.9E-25 T 26-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RGE_RS04585 23f13ed0ad3c487c7d3b0655464019ce 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 217 4.6E-17 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS04585 23f13ed0ad3c487c7d3b0655464019ce 221 SUPERFAMILY SSF161098 15 207 1.14E-41 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS07705 5a6a57ba8e9f66af2acfe053ffb1ff27 105 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 6 105 20.691 T 26-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RGE_RS07705 5a6a57ba8e9f66af2acfe053ffb1ff27 105 PANTHER PTHR11434 7 105 3.8E-41 T 26-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RGE_RS07705 5a6a57ba8e9f66af2acfe053ffb1ff27 105 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 11 100 1.3E-23 T 26-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RGE_RS07690 34cf39778ed9c2cdcacec56860b15080 353 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 65 80 - T 26-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 RGE_RS07690 34cf39778ed9c2cdcacec56860b15080 353 Pfam PF00146 NADH dehydrogenase 25 341 3.5E-126 T 26-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RGE_RS07690 34cf39778ed9c2cdcacec56860b15080 353 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 19 348 25.063 T 26-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RGE_RS07690 34cf39778ed9c2cdcacec56860b15080 353 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 231 244 - T 26-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 RGE_RS07690 34cf39778ed9c2cdcacec56860b15080 353 PANTHER PTHR11432 1 353 3.9E-165 T 26-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RGE_RS07690 34cf39778ed9c2cdcacec56860b15080 353 PANTHER PTHR11432:SF3 1 353 3.9E-165 T 26-04-2016 RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 6.0E-47 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 182 6.0E-47 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 163 6.0E-47 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.0E-47 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 218 6.0E-47 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 134 6.0E-47 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PANTHER PTHR24322 10 128 1.2E-57 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PANTHER PTHR24322 144 176 1.2E-57 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 Gene3D G3DSA:3.40.50.720 1 236 2.2E-91 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 132 5.4E-14 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 71 82 5.4E-14 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 163 5.4E-14 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 235 1.1E-68 T 26-04-2016 RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 131 159 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PANTHER PTHR24322:SF328 10 128 1.2E-57 T 26-04-2016 RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 PANTHER PTHR24322:SF328 144 176 1.2E-57 T 26-04-2016 RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 SUPERFAMILY SSF51735 4 236 3.14E-86 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20555 d6224fa649cfc1ba91fcaca046b838a3 236 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 175 1.1E-4 T 26-04-2016 RGE_RS22605 d0dbe2d282e6cff42e4bd9425bbcc255 188 SUPERFAMILY SSF55811 33 160 2.1E-19 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS22605 d0dbe2d282e6cff42e4bd9425bbcc255 188 Gene3D G3DSA:3.90.79.10 46 160 5.9E-19 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS22605 d0dbe2d282e6cff42e4bd9425bbcc255 188 ProSitePatterns PS00893 Nudix box signature. 78 99 - T 26-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RGE_RS22605 d0dbe2d282e6cff42e4bd9425bbcc255 188 Pfam PF00293 NUDIX domain 46 160 7.1E-12 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS21195 876582ed4ce8cb31b39b601c6278e786 484 PANTHER PTHR32024:SF2 1 484 7.8E-180 T 26-04-2016 RGE_RS21195 876582ed4ce8cb31b39b601c6278e786 484 PANTHER PTHR32024 1 484 7.8E-180 T 26-04-2016 RGE_RS21195 876582ed4ce8cb31b39b601c6278e786 484 Pfam PF02386 Cation transport protein 41 478 8.7E-57 T 26-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RGE_RS21195 876582ed4ce8cb31b39b601c6278e786 484 PIRSF PIRSF006247 1 484 6.4E-160 T 26-04-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 RGE_RS09660 b14b5c94abd701de6ad1b634456e482d 222 Pfam PF13860 FlgD Ig-like domain 105 171 1.1E-11 T 26-04-2016 IPR025965 FlgD Ig-like domain RGE_RS09660 b14b5c94abd701de6ad1b634456e482d 222 PANTHER PTHR30435 29 193 2.3E-22 T 26-04-2016 RGE_RS09660 b14b5c94abd701de6ad1b634456e482d 222 Pfam PF03963 Flagellar hook capping protein - N-terminal region 7 72 4.0E-16 T 26-04-2016 IPR005648 Flagellar hook capping protein RGE_RS09660 b14b5c94abd701de6ad1b634456e482d 222 PANTHER PTHR30435:SF15 29 193 2.3E-22 T 26-04-2016 RGE_RS10275 d8da4192d5b5360763e16849dedde1ca 515 Pfam PF03734 L,D-transpeptidase catalytic domain 274 444 8.3E-29 T 26-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RGE_RS10275 d8da4192d5b5360763e16849dedde1ca 515 Gene3D G3DSA:2.40.440.10 387 434 4.0E-8 T 26-04-2016 RGE_RS10275 d8da4192d5b5360763e16849dedde1ca 515 Gene3D G3DSA:2.40.440.10 272 323 4.0E-8 T 26-04-2016 RGE_RS10275 d8da4192d5b5360763e16849dedde1ca 515 Gene3D G3DSA:1.10.101.10 180 255 1.6E-11 T 26-04-2016 IPR002477 Peptidoglycan binding-like RGE_RS10275 d8da4192d5b5360763e16849dedde1ca 515 PANTHER PTHR41533 38 510 1.2E-76 T 26-04-2016 RGE_RS10275 d8da4192d5b5360763e16849dedde1ca 515 SUPERFAMILY SSF141523 272 332 3.53E-14 T 26-04-2016 RGE_RS10275 d8da4192d5b5360763e16849dedde1ca 515 SUPERFAMILY SSF141523 385 435 3.53E-14 T 26-04-2016 RGE_RS10275 d8da4192d5b5360763e16849dedde1ca 515 Pfam PF01471 Putative peptidoglycan binding domain 195 246 2.4E-5 T 26-04-2016 IPR002477 Peptidoglycan binding-like RGE_RS10275 d8da4192d5b5360763e16849dedde1ca 515 PANTHER PTHR41533:SF1 38 510 1.2E-76 T 26-04-2016 RGE_RS10275 d8da4192d5b5360763e16849dedde1ca 515 SUPERFAMILY SSF47090 178 253 1.8E-9 T 26-04-2016 IPR002477 Peptidoglycan binding-like RGE_RS23060 26a8b40c5a698a3c5c5da10768623e27 183 Gene3D G3DSA:3.40.50.150 28 155 7.2E-12 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS23060 26a8b40c5a698a3c5c5da10768623e27 183 Pfam PF08241 Methyltransferase domain 33 84 1.9E-7 T 26-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RGE_RS23060 26a8b40c5a698a3c5c5da10768623e27 183 SUPERFAMILY SSF53335 32 161 1.64E-14 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS14805 0d635908b57e7a67b7b7c30d4d63ce08 555 Pfam PF03929 PepSY-associated TM region 10 394 7.2E-51 T 26-04-2016 IPR005625 PepSY-associated TM protein RGE_RS14805 0d635908b57e7a67b7b7c30d4d63ce08 555 PANTHER PTHR34219 89 542 4.3E-95 T 26-04-2016 RGE_RS14805 0d635908b57e7a67b7b7c30d4d63ce08 555 PANTHER PTHR34219 1 73 4.3E-95 T 26-04-2016 RGE_RS14805 0d635908b57e7a67b7b7c30d4d63ce08 555 PANTHER PTHR34219:SF4 89 542 4.3E-95 T 26-04-2016 RGE_RS14805 0d635908b57e7a67b7b7c30d4d63ce08 555 PANTHER PTHR34219:SF4 1 73 4.3E-95 T 26-04-2016 RGE_RS12450 258c0d9032f2d85f71c4b041ec942a40 417 Gene3D G3DSA:1.20.1250.20 10 185 7.9E-34 T 26-04-2016 RGE_RS12450 258c0d9032f2d85f71c4b041ec942a40 417 PANTHER PTHR23505 18 398 8.0E-52 T 26-04-2016 RGE_RS12450 258c0d9032f2d85f71c4b041ec942a40 417 SUPERFAMILY SSF103473 6 397 3.14E-56 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS12450 258c0d9032f2d85f71c4b041ec942a40 417 Pfam PF07690 Major Facilitator Superfamily 16 364 9.3E-40 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS12450 258c0d9032f2d85f71c4b041ec942a40 417 Gene3D G3DSA:1.20.1250.20 212 397 7.6E-10 T 26-04-2016 RGE_RS11905 e6239cb476cc5619d7d96142f6d26a50 150 PANTHER PTHR23091 11 145 6.1E-25 T 26-04-2016 RGE_RS11905 e6239cb476cc5619d7d96142f6d26a50 150 SUPERFAMILY SSF55729 3 147 8.98E-30 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS11905 e6239cb476cc5619d7d96142f6d26a50 150 Gene3D G3DSA:3.40.630.30 3 146 1.7E-36 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS11905 e6239cb476cc5619d7d96142f6d26a50 150 Pfam PF13673 Acetyltransferase (GNAT) domain 74 147 4.2E-10 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS11905 e6239cb476cc5619d7d96142f6d26a50 150 PANTHER PTHR23091:SF275 11 145 6.1E-25 T 26-04-2016 RGE_RS12245 2676788c35c73c840e1b38794b399c7b 156 Pfam PF01814 Hemerythrin HHE cation binding domain 19 129 6.3E-17 T 26-04-2016 IPR012312 Haemerythrin-like RGE_RS12245 2676788c35c73c840e1b38794b399c7b 156 Gene3D G3DSA:1.20.120.520 13 145 1.1E-10 T 26-04-2016 RGE_RS04465 a61b3c307929f4972d0af624812fcc96 340 Gene3D G3DSA:3.20.20.70 18 336 3.0E-52 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS04465 a61b3c307929f4972d0af624812fcc96 340 PANTHER PTHR11228 17 337 3.2E-40 T 26-04-2016 RGE_RS04465 a61b3c307929f4972d0af624812fcc96 340 Pfam PF13186 Iron-sulfur cluster-binding domain 266 333 1.9E-9 T 26-04-2016 IPR023885 4Fe4S-binding SPASM domain RGE_RS04465 a61b3c307929f4972d0af624812fcc96 340 Pfam PF04055 Radical SAM superfamily 24 154 5.8E-19 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS04465 a61b3c307929f4972d0af624812fcc96 340 SUPERFAMILY SSF102114 18 335 9.16E-49 T 26-04-2016 RGE_RS04465 a61b3c307929f4972d0af624812fcc96 340 SMART SM00729 19 236 3.0E-5 T 26-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RGE_RS10060 9a94b5613a9bec0e7dcb4e04006f2085 837 Hamap MF_01871 UPF0753 protein . 25 828 22.506 T 26-04-2016 IPR018752 Uncharacterised protein family UPF0753 RGE_RS10060 9a94b5613a9bec0e7dcb4e04006f2085 837 Pfam PF10070 Uncharacterized protein conserved in bacteria (DUF2309) 31 813 3.7E-247 T 26-04-2016 IPR018752 Uncharacterised protein family UPF0753 RGE_RS10060 9a94b5613a9bec0e7dcb4e04006f2085 837 PANTHER PTHR38344:SF1 22 835 8.9E-209 T 26-04-2016 RGE_RS10060 9a94b5613a9bec0e7dcb4e04006f2085 837 PANTHER PTHR38344 22 835 8.9E-209 T 26-04-2016 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 428 457 2.9E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 18 2.9E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 351 378 2.9E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 274 303 2.9E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 176 196 2.9E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 380 409 2.9E-52 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 SMART SM00283 253 500 1.2E-91 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 PANTHER PTHR32089:SF63 174 501 2.6E-140 T 26-04-2016 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 PANTHER PTHR32089:SF63 94 127 2.6E-140 T 26-04-2016 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 Gene3D G3DSA:1.10.287.950 268 472 1.9E-58 T 26-04-2016 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 PANTHER PTHR32089 174 501 2.6E-140 T 26-04-2016 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 PANTHER PTHR32089 94 127 2.6E-140 T 26-04-2016 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 Pfam PF00672 HAMP domain 182 249 2.9E-11 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 SMART SM00304 200 252 8.6E-8 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 SUPERFAMILY SSF58104 220 501 6.02E-70 T 26-04-2016 RGE_RS11120 1c91d9833bdd67cbc4be99a6032cfdfc 501 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 306 499 5.0E-60 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS07480 6c05bce562f83521789c86f0ee4abbc0 360 PANTHER PTHR33376 1 342 1.5E-134 T 26-04-2016 RGE_RS07480 6c05bce562f83521789c86f0ee4abbc0 360 PANTHER PTHR33376:SF5 1 342 1.5E-134 T 26-04-2016 RGE_RS07480 6c05bce562f83521789c86f0ee4abbc0 360 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 38 317 3.0E-59 T 26-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RGE_RS07480 6c05bce562f83521789c86f0ee4abbc0 360 PIRSF PIRSF039026 1 357 2.5E-119 T 26-04-2016 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like RGE_RS07480 6c05bce562f83521789c86f0ee4abbc0 360 SUPERFAMILY SSF53850 142 268 5.98E-5 T 26-04-2016 RGE_RS08840 01efdda23f394849ac63be1c1df2350b 104 SUPERFAMILY SSF81273 49 84 2.24E-6 T 26-04-2016 RGE_RS08840 01efdda23f394849ac63be1c1df2350b 104 Pfam PF00816 H-NS histone family 4 77 1.9E-9 T 26-04-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 RGE_RS09365 d82408a4cbc781e76f8dd63ced43d6c0 868 SUPERFAMILY SSF54862 505 525 4.75E-8 T 26-04-2016 RGE_RS09365 d82408a4cbc781e76f8dd63ced43d6c0 868 SUPERFAMILY SSF54862 565 676 4.75E-8 T 26-04-2016 RGE_RS09365 d82408a4cbc781e76f8dd63ced43d6c0 868 PANTHER PTHR30224 380 698 4.7E-110 T 26-04-2016 RGE_RS09365 d82408a4cbc781e76f8dd63ced43d6c0 868 PANTHER PTHR30224 53 364 4.7E-110 T 26-04-2016 RGE_RS09365 d82408a4cbc781e76f8dd63ced43d6c0 868 Gene3D G3DSA:3.30.70.20 612 688 3.5E-6 T 26-04-2016 RGE_RS09365 d82408a4cbc781e76f8dd63ced43d6c0 868 Pfam PF12801 4Fe-4S binding domain 492 536 2.5E-13 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS09365 d82408a4cbc781e76f8dd63ced43d6c0 868 Pfam PF12801 4Fe-4S binding domain 596 631 2.2E-5 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS09365 d82408a4cbc781e76f8dd63ced43d6c0 868 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 644 655 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS09365 d82408a4cbc781e76f8dd63ced43d6c0 868 SMART SM00900 96 190 9.4E-10 T 26-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 RGE_RS09365 d82408a4cbc781e76f8dd63ced43d6c0 868 PANTHER PTHR30224:SF4 380 698 4.7E-110 T 26-04-2016 RGE_RS09365 d82408a4cbc781e76f8dd63ced43d6c0 868 PANTHER PTHR30224:SF4 53 364 4.7E-110 T 26-04-2016 RGE_RS09365 d82408a4cbc781e76f8dd63ced43d6c0 868 Pfam PF04205 FMN-binding domain 100 178 9.4E-5 T 26-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 RGE_RS01205 162ec44a2a7dcca395ed60424ab9e653 315 Hamap MF_00162 Glutathione synthetase [gshB]. 1 315 159.387 T 26-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RGE_RS01205 162ec44a2a7dcca395ed60424ab9e653 315 SUPERFAMILY SSF52440 1 122 9.49E-38 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS01205 162ec44a2a7dcca395ed60424ab9e653 315 PANTHER PTHR21621:SF4 1 314 2.2E-114 T 26-04-2016 RGE_RS01205 162ec44a2a7dcca395ed60424ab9e653 315 Gene3D G3DSA:3.30.470.20 192 300 2.3E-45 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS01205 162ec44a2a7dcca395ed60424ab9e653 315 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 297 2.9E-71 T 26-04-2016 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RGE_RS01205 162ec44a2a7dcca395ed60424ab9e653 315 SUPERFAMILY SSF56059 124 310 2.36E-56 T 26-04-2016 RGE_RS01205 162ec44a2a7dcca395ed60424ab9e653 315 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 1 120 1.6E-42 T 26-04-2016 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RGE_RS01205 162ec44a2a7dcca395ed60424ab9e653 315 PANTHER PTHR21621 1 314 2.2E-114 T 26-04-2016 RGE_RS01205 162ec44a2a7dcca395ed60424ab9e653 315 Gene3D G3DSA:3.40.50.20 1 129 5.0E-48 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS01205 162ec44a2a7dcca395ed60424ab9e653 315 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 312 2.6E-123 T 26-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RGE_RS01205 162ec44a2a7dcca395ed60424ab9e653 315 Gene3D G3DSA:3.30.1490.20 137 191 1.7E-27 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS07935 8a2cb1be5c83fe7f6a9b70a76a8805d6 407 SUPERFAMILY SSF158745 52 398 8.37E-31 T 26-04-2016 RGE_RS07935 8a2cb1be5c83fe7f6a9b70a76a8805d6 407 PRINTS PR01950 LanC-like protein superfamily signature 58 76 4.9E-15 T 26-04-2016 IPR007822 Lanthionine synthetase C-like RGE_RS07935 8a2cb1be5c83fe7f6a9b70a76a8805d6 407 PRINTS PR01950 LanC-like protein superfamily signature 213 229 4.9E-15 T 26-04-2016 IPR007822 Lanthionine synthetase C-like RGE_RS07935 8a2cb1be5c83fe7f6a9b70a76a8805d6 407 PRINTS PR01950 LanC-like protein superfamily signature 326 339 4.9E-15 T 26-04-2016 IPR007822 Lanthionine synthetase C-like RGE_RS07935 8a2cb1be5c83fe7f6a9b70a76a8805d6 407 PRINTS PR01950 LanC-like protein superfamily signature 282 302 4.9E-15 T 26-04-2016 IPR007822 Lanthionine synthetase C-like RGE_RS07935 8a2cb1be5c83fe7f6a9b70a76a8805d6 407 PRINTS PR01950 LanC-like protein superfamily signature 377 394 4.9E-15 T 26-04-2016 IPR007822 Lanthionine synthetase C-like RGE_RS07935 8a2cb1be5c83fe7f6a9b70a76a8805d6 407 Pfam PF05147 Lanthionine synthetase C-like protein 213 392 3.3E-16 T 26-04-2016 IPR007822 Lanthionine synthetase C-like RGE_RS07935 8a2cb1be5c83fe7f6a9b70a76a8805d6 407 SMART SM01260 55 404 1.6E-8 T 26-04-2016 IPR007822 Lanthionine synthetase C-like RGE_RS07935 8a2cb1be5c83fe7f6a9b70a76a8805d6 407 PANTHER PTHR12736:SF7 282 351 2.9E-12 T 26-04-2016 RGE_RS07935 8a2cb1be5c83fe7f6a9b70a76a8805d6 407 PANTHER PTHR12736 282 351 2.9E-12 T 26-04-2016 RGE_RS01795 10b39cf442900e0d9460951b53496728 279 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 253 276 6.6E-6 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS01795 10b39cf442900e0d9460951b53496728 279 Pfam PF07589 PEP-CTERM motif 252 275 1.3E-6 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 SUPERFAMILY SSF158472 207 256 1.02E-5 T 26-04-2016 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 SMART SM00387 359 468 1.5E-33 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 SUPERFAMILY SSF55874 314 466 3.01E-36 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 Pfam PF00512 His Kinase A (phospho-acceptor) domain 262 323 4.8E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 SUPERFAMILY SSF47384 244 323 5.69E-12 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 422 3.8E-18 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 394 408 3.8E-18 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 446 3.8E-18 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 465 3.8E-18 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 Gene3D G3DSA:3.30.565.10 311 466 2.0E-37 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 Pfam PF00672 HAMP domain 188 255 2.1E-12 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 Gene3D G3DSA:1.10.287.130 251 310 1.1E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 PANTHER PTHR24423 206 466 4.5E-62 T 26-04-2016 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 PANTHER PTHR24423:SF564 206 466 4.5E-62 T 26-04-2016 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 SMART SM00388 260 324 3.8E-10 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 SMART SM00304 207 259 5.0E-12 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS17150 2125baa27155c9467399bfe7a4cf8051 468 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 467 3.8E-22 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS13755 b767b89df4400266da12791294eed97a 325 PANTHER PTHR13767:SF2 1 300 3.8E-117 T 26-04-2016 RGE_RS13755 b767b89df4400266da12791294eed97a 325 Gene3D G3DSA:2.30.130.10 243 301 5.4E-8 T 26-04-2016 IPR015947 PUA-like domain RGE_RS13755 b767b89df4400266da12791294eed97a 325 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 15 222 1.4E-77 T 26-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS13755 b767b89df4400266da12791294eed97a 325 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 184 241 1.9E-15 T 26-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal RGE_RS13755 b767b89df4400266da12791294eed97a 325 PANTHER PTHR13767 1 300 3.8E-117 T 26-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS13755 b767b89df4400266da12791294eed97a 325 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 245 300 8.4E-9 T 26-04-2016 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS13755 b767b89df4400266da12791294eed97a 325 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 14 306 18.669 T 26-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS13755 b767b89df4400266da12791294eed97a 325 SUPERFAMILY SSF55120 14 240 3.74E-82 T 26-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RGE_RS13755 b767b89df4400266da12791294eed97a 325 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 37 183 9.5E-56 T 26-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 RGE_RS07100 86737ac6f7ad5eca3c5028324d144939 275 PANTHER PTHR22748:SF9 18 274 6.3E-145 T 26-04-2016 RGE_RS07100 86737ac6f7ad5eca3c5028324d144939 275 Gene3D G3DSA:3.60.10.10 17 274 6.0E-77 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS07100 86737ac6f7ad5eca3c5028324d144939 275 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 18 274 8.9E-72 T 26-04-2016 RGE_RS07100 86737ac6f7ad5eca3c5028324d144939 275 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 21 267 4.8E-21 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS07100 86737ac6f7ad5eca3c5028324d144939 275 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 18 274 3.2E-68 T 26-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RGE_RS07100 86737ac6f7ad5eca3c5028324d144939 275 SUPERFAMILY SSF56219 18 274 3.8E-74 T 26-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RGE_RS07100 86737ac6f7ad5eca3c5028324d144939 275 PANTHER PTHR22748 18 274 6.3E-145 T 26-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RGE_RS03715 11c953663aa168944fc2006f9bb0ce14 244 Pfam PF00583 Acetyltransferase (GNAT) family 84 152 4.9E-5 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS03715 11c953663aa168944fc2006f9bb0ce14 244 SUPERFAMILY SSF55729 25 156 1.24E-13 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS03715 11c953663aa168944fc2006f9bb0ce14 244 Gene3D G3DSA:3.40.630.30 25 155 7.6E-12 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 PANTHER PTHR32071 24 495 4.5E-168 T 26-04-2016 RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 SUPERFAMILY SSF46689 394 494 1.34E-8 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 Gene3D G3DSA:1.10.8.60 354 425 3.9E-19 T 26-04-2016 RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 Gene3D G3DSA:1.10.10.60 439 495 4.7E-11 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 SUPERFAMILY SSF52172 24 224 4.84E-35 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 Pfam PF00072 Response regulator receiver domain 24 133 1.9E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 SMART SM00382 201 344 9.2E-10 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 267 282 - T 26-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 SUPERFAMILY SSF52540 191 413 7.14E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 Gene3D G3DSA:3.40.50.300 190 353 3.6E-52 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 458 475 3.3E-7 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 475 495 3.3E-7 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 SMART SM00448 22 133 1.9E-25 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 PANTHER PTHR32071:SF16 24 495 4.5E-168 T 26-04-2016 RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 394 403 - T 26-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 Pfam PF00158 Sigma-54 interaction domain 190 347 2.4E-65 T 26-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 Gene3D G3DSA:3.40.50.2300 24 151 7.9E-33 T 26-04-2016 RGE_RS17530 510e8f2b49c545fc4baa9df3fa739e8a 498 Pfam PF02954 Bacterial regulatory protein, Fis family 452 492 3.9E-10 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS12735 6f1125634f161061c5870c3ef71e425f 318 PRINTS PR00116 Arginase signature 230 259 1.1E-12 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS12735 6f1125634f161061c5870c3ef71e425f 318 PRINTS PR00116 Arginase signature 110 125 1.1E-12 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS12735 6f1125634f161061c5870c3ef71e425f 318 PIRSF PIRSF036979 3 308 2.4E-70 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS12735 6f1125634f161061c5870c3ef71e425f 318 Pfam PF00491 Arginase family 27 301 2.9E-70 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS12735 6f1125634f161061c5870c3ef71e425f 318 PANTHER PTHR11358 31 303 2.7E-64 T 26-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RGE_RS12735 6f1125634f161061c5870c3ef71e425f 318 Gene3D G3DSA:3.40.800.10 8 303 2.0E-79 T 26-04-2016 IPR023696 Ureohydrolase domain RGE_RS12735 6f1125634f161061c5870c3ef71e425f 318 ProSitePatterns PS01053 Arginase family signature. 233 254 - T 26-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 RGE_RS12735 6f1125634f161061c5870c3ef71e425f 318 SUPERFAMILY SSF52768 7 304 5.22E-72 T 26-04-2016 RGE_RS04230 798ed18af7d001f0b36feccc4400b469 248 PANTHER PTHR21235:SF15 1 243 1.7E-96 T 26-04-2016 RGE_RS04230 798ed18af7d001f0b36feccc4400b469 248 Gene3D G3DSA:3.20.20.70 1 239 8.6E-87 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS04230 798ed18af7d001f0b36feccc4400b469 248 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 235 1.8E-75 T 26-04-2016 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 RGE_RS04230 798ed18af7d001f0b36feccc4400b469 248 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 240 35.817 T 26-04-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 RGE_RS04230 798ed18af7d001f0b36feccc4400b469 248 SUPERFAMILY SSF51366 1 238 4.71E-74 T 26-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RGE_RS04230 798ed18af7d001f0b36feccc4400b469 248 PANTHER PTHR21235 1 243 1.7E-96 T 26-04-2016 RGE_RS04230 798ed18af7d001f0b36feccc4400b469 248 Pfam PF00977 Histidine biosynthesis protein 3 232 1.4E-78 T 26-04-2016 IPR006062 Histidine biosynthesis GO:0000105 RGE_RS21635 3bd9e432644c71c16fcf7d269c7c438f 212 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 9 18 - T 26-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 RGE_RS21635 3bd9e432644c71c16fcf7d269c7c438f 212 SUPERFAMILY SSF53254 5 205 5.39E-60 T 26-04-2016 IPR029033 Histidine phosphatase superfamily RGE_RS21635 3bd9e432644c71c16fcf7d269c7c438f 212 SMART SM00855 6 160 4.4E-21 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS21635 3bd9e432644c71c16fcf7d269c7c438f 212 PANTHER PTHR23029 1 205 1.0E-49 T 26-04-2016 RGE_RS21635 3bd9e432644c71c16fcf7d269c7c438f 212 Gene3D G3DSA:3.40.50.1240 3 208 4.8E-62 T 26-04-2016 IPR029033 Histidine phosphatase superfamily RGE_RS21635 3bd9e432644c71c16fcf7d269c7c438f 212 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 199 5.9E-63 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS10385 3279c3ec59fedb13b5ebb0447b6202bf 119 SUPERFAMILY SSF52172 3 114 1.39E-25 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS10385 3279c3ec59fedb13b5ebb0447b6202bf 119 Gene3D G3DSA:3.40.50.2300 2 116 6.4E-26 T 26-04-2016 RGE_RS10385 3279c3ec59fedb13b5ebb0447b6202bf 119 SMART SM00448 1 105 1.5E-11 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS10385 3279c3ec59fedb13b5ebb0447b6202bf 119 PANTHER PTHR26402 4 109 8.5E-18 T 26-04-2016 RGE_RS10385 3279c3ec59fedb13b5ebb0447b6202bf 119 Pfam PF00072 Response regulator receiver domain 6 103 2.2E-16 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS22595 e9fd3fe5e77bd9b0ea57679a650a33ed 352 Pfam PF13533 Biotin-lipoyl like 56 102 2.8E-12 T 26-04-2016 RGE_RS22595 e9fd3fe5e77bd9b0ea57679a650a33ed 352 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 30 338 1.3E-49 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS22595 e9fd3fe5e77bd9b0ea57679a650a33ed 352 SUPERFAMILY SSF111369 45 271 1.44E-23 T 26-04-2016 RGE_RS22595 e9fd3fe5e77bd9b0ea57679a650a33ed 352 Gene3D G3DSA:2.40.50.100 163 194 6.6E-16 T 26-04-2016 RGE_RS22595 e9fd3fe5e77bd9b0ea57679a650a33ed 352 Gene3D G3DSA:2.40.50.100 55 88 6.6E-16 T 26-04-2016 RGE_RS22595 e9fd3fe5e77bd9b0ea57679a650a33ed 352 PANTHER PTHR30469 25 341 3.2E-44 T 26-04-2016 RGE_RS11585 40ebbc37658edb74e43d7af77b7df516 207 PANTHER PTHR33545:SF5 2 205 2.4E-58 T 26-04-2016 RGE_RS11585 40ebbc37658edb74e43d7af77b7df516 207 PANTHER PTHR33545 2 205 2.4E-58 T 26-04-2016 RGE_RS11585 40ebbc37658edb74e43d7af77b7df516 207 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 23 190 1.6E-34 T 26-04-2016 IPR003740 Uncharacterised membrane protein YitT RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 SUPERFAMILY SSF51735 3 246 6.85E-60 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 Pfam PF00106 short chain dehydrogenase 6 196 1.8E-41 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 Gene3D G3DSA:3.40.50.720 2 247 2.9E-67 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 2.3E-25 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 2.3E-25 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.3E-25 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.3E-25 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.3E-25 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.3E-25 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 6.5E-8 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 6.5E-8 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 6.5E-8 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PANTHER PTHR24322 158 189 6.2E-53 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PANTHER PTHR24322 10 142 6.2E-53 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PANTHER PTHR24322:SF356 158 189 6.2E-53 T 26-04-2016 RGE_RS15595 3d4d9aa72b3d50b192832bdeb0b3a61a 252 PANTHER PTHR24322:SF356 10 142 6.2E-53 T 26-04-2016 RGE_RS09670 9676a9b03ee10f473925ec5bcdea93c5 240 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 166 237 1.6E-16 T 26-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RGE_RS09670 9676a9b03ee10f473925ec5bcdea93c5 240 SUPERFAMILY SSF117143 78 199 3.4E-8 T 26-04-2016 RGE_RS09670 9676a9b03ee10f473925ec5bcdea93c5 240 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 5 118 2.9E-23 T 26-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RGE_RS09670 9676a9b03ee10f473925ec5bcdea93c5 240 PANTHER PTHR30435 1 239 4.1E-62 T 26-04-2016 RGE_RS09670 9676a9b03ee10f473925ec5bcdea93c5 240 Pfam PF00460 Flagella basal body rod protein 5 35 1.2E-5 T 26-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RGE_RS09670 9676a9b03ee10f473925ec5bcdea93c5 240 PANTHER PTHR30435:SF18 1 239 4.1E-62 T 26-04-2016 RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 SUPERFAMILY SSF52402 176 323 3.53E-44 T 26-04-2016 RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 SUPERFAMILY SSF52402 400 539 3.53E-44 T 26-04-2016 RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 Pfam PF00733 Asparagine synthase 183 544 7.8E-46 T 26-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 PANTHER PTHR11772 55 325 5.4E-29 T 26-04-2016 RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 PANTHER PTHR11772 392 543 5.4E-29 T 26-04-2016 RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 SUPERFAMILY SSF56235 21 160 4.34E-18 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 Gene3D G3DSA:3.40.50.620 176 328 4.1E-44 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 Gene3D G3DSA:3.40.50.620 400 546 4.1E-44 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 PANTHER PTHR11772:SF10 55 325 5.4E-29 T 26-04-2016 RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 PANTHER PTHR11772:SF10 392 543 5.4E-29 T 26-04-2016 RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 Pfam PF13537 Glutamine amidotransferase domain 56 112 9.6E-8 T 26-04-2016 IPR017932 Glutamine amidotransferase type 2 domain RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 Gene3D G3DSA:3.60.20.10 53 162 1.0E-18 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS02110 bd32713813d561a74af510f5ba60c6da 550 PIRSF PIRSF001589 51 550 1.3E-65 T 26-04-2016 RGE_RS18530 f7a1e7977b31d063efdc9499654411f0 404 Gene3D G3DSA:1.20.1250.20 22 199 2.2E-19 T 26-04-2016 RGE_RS18530 f7a1e7977b31d063efdc9499654411f0 404 PANTHER PTHR23501:SF79 24 400 1.2E-95 T 26-04-2016 RGE_RS18530 f7a1e7977b31d063efdc9499654411f0 404 SUPERFAMILY SSF103473 18 399 6.02E-48 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS18530 f7a1e7977b31d063efdc9499654411f0 404 Gene3D G3DSA:1.20.1250.20 220 399 3.4E-12 T 26-04-2016 RGE_RS18530 f7a1e7977b31d063efdc9499654411f0 404 Pfam PF07690 Major Facilitator Superfamily 31 337 1.4E-27 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS18530 f7a1e7977b31d063efdc9499654411f0 404 PANTHER PTHR23501 24 400 1.2E-95 T 26-04-2016 RGE_RS08985 18b652496c48758bd8de24115fc46321 235 Pfam PF13649 Methyltransferase domain 63 156 1.6E-18 T 26-04-2016 RGE_RS08985 18b652496c48758bd8de24115fc46321 235 SUPERFAMILY SSF53335 21 228 2.89E-42 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS08985 18b652496c48758bd8de24115fc46321 235 PANTHER PTHR10108 26 231 1.9E-27 T 26-04-2016 RGE_RS08985 18b652496c48758bd8de24115fc46321 235 PANTHER PTHR10108:SF877 26 231 1.9E-27 T 26-04-2016 RGE_RS08985 18b652496c48758bd8de24115fc46321 235 Gene3D G3DSA:3.40.50.150 39 209 1.6E-35 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS07135 892deec10ee2c5c16ea7a4758141e998 265 Pfam PF00990 Diguanylate cyclase, GGDEF domain 92 246 1.1E-25 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07135 892deec10ee2c5c16ea7a4758141e998 265 SUPERFAMILY SSF55073 96 249 1.88E-28 T 26-04-2016 IPR029787 Nucleotide cyclase RGE_RS07135 892deec10ee2c5c16ea7a4758141e998 265 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 88 249 1.7E-25 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07135 892deec10ee2c5c16ea7a4758141e998 265 SMART SM00267 79 251 4.3E-25 T 26-04-2016 IPR000160 GGDEF domain RGE_RS07135 892deec10ee2c5c16ea7a4758141e998 265 Gene3D G3DSA:3.30.70.270 92 250 5.2E-33 T 26-04-2016 RGE_RS10435 3085653083dbbb0ab590d33c0575b44e 351 Pfam PF04055 Radical SAM superfamily 110 275 1.6E-11 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS10435 3085653083dbbb0ab590d33c0575b44e 351 PANTHER PTHR30544:SF5 74 339 3.3E-98 T 26-04-2016 RGE_RS10435 3085653083dbbb0ab590d33c0575b44e 351 PANTHER PTHR30544 74 339 3.3E-98 T 26-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RGE_RS10435 3085653083dbbb0ab590d33c0575b44e 351 SUPERFAMILY SSF102114 108 317 5.62E-14 T 26-04-2016 RGE_RS10435 3085653083dbbb0ab590d33c0575b44e 351 Gene3D G3DSA:3.20.20.70 108 313 1.1E-11 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS18840 858c1fafc1bb2fa9ef9c4b3486e5c7d6 504 PANTHER PTHR30121 14 441 1.9E-164 T 26-04-2016 RGE_RS18840 858c1fafc1bb2fa9ef9c4b3486e5c7d6 504 SUPERFAMILY SSF52540 19 369 2.75E-51 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18840 858c1fafc1bb2fa9ef9c4b3486e5c7d6 504 PANTHER PTHR30121:SF3 14 441 1.9E-164 T 26-04-2016 RGE_RS18840 858c1fafc1bb2fa9ef9c4b3486e5c7d6 504 Gene3D G3DSA:3.40.50.300 20 108 2.4E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18840 858c1fafc1bb2fa9ef9c4b3486e5c7d6 504 Gene3D G3DSA:3.40.50.300 204 380 2.4E-57 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18840 858c1fafc1bb2fa9ef9c4b3486e5c7d6 504 Pfam PF05872 Bacterial protein of unknown function (DUF853) 9 503 3.0E-230 T 26-04-2016 IPR033186 Helicase HerA-like C-terminal RGE_RS00635 c28ada3b11314931baec47ce811b1b0e 251 SUPERFAMILY SSF46785 138 209 1.47E-6 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00635 c28ada3b11314931baec47ce811b1b0e 251 Gene3D G3DSA:1.10.10.10 137 208 4.8E-5 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS00635 c28ada3b11314931baec47ce811b1b0e 251 Pfam PF13545 Crp-like helix-turn-helix domain 140 205 3.8E-7 T 26-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RGE_RS00635 c28ada3b11314931baec47ce811b1b0e 251 SUPERFAMILY SSF51206 3 124 2.75E-15 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS00635 c28ada3b11314931baec47ce811b1b0e 251 Gene3D G3DSA:2.60.120.10 2 124 1.0E-13 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS13945 5ad6d9eaea299e532c1c1bb532574e37 454 Pfam PF07730 Histidine kinase 253 320 1.4E-13 T 26-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RGE_RS13945 5ad6d9eaea299e532c1c1bb532574e37 454 Pfam PF05227 CHASE3 domain 51 173 1.5E-27 T 26-04-2016 IPR007891 CHASE3 RGE_RS13945 5ad6d9eaea299e532c1c1bb532574e37 454 PANTHER PTHR24421:SF1 248 451 8.1E-39 T 26-04-2016 RGE_RS13945 5ad6d9eaea299e532c1c1bb532574e37 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 361 448 7.5E-11 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS13945 5ad6d9eaea299e532c1c1bb532574e37 454 PANTHER PTHR24421 248 451 8.1E-39 T 26-04-2016 RGE_RS13945 5ad6d9eaea299e532c1c1bb532574e37 454 SUPERFAMILY SSF55874 325 447 3.54E-20 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS13945 5ad6d9eaea299e532c1c1bb532574e37 454 Gene3D G3DSA:3.30.565.10 338 451 2.8E-11 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS13945 5ad6d9eaea299e532c1c1bb532574e37 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 406 3.8E-6 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS13945 5ad6d9eaea299e532c1c1bb532574e37 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 446 3.8E-6 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS13945 5ad6d9eaea299e532c1c1bb532574e37 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 427 3.8E-6 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS13945 5ad6d9eaea299e532c1c1bb532574e37 454 SMART SM00387 356 449 5.2E-8 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS11540 424013bfd8a18185fb280e047dc0bfb2 100 Pfam PF01355 High potential iron-sulfur protein 32 97 1.2E-26 T 26-04-2016 IPR000170 High potential iron-sulphur protein GO:0009055|GO:0019646 RGE_RS11540 424013bfd8a18185fb280e047dc0bfb2 100 Gene3D G3DSA:4.10.490.10 27 100 4.3E-31 T 26-04-2016 IPR000170 High potential iron-sulphur protein GO:0009055|GO:0019646 RGE_RS11540 424013bfd8a18185fb280e047dc0bfb2 100 SUPERFAMILY SSF57652 22 100 2.09E-28 T 26-04-2016 IPR000170 High potential iron-sulphur protein GO:0009055|GO:0019646 RGE_RS19570 69a88052db6a26fd1c3168790186ec25 101 Gene3D G3DSA:2.10.150.10 1 100 2.7E-48 T 26-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19570 69a88052db6a26fd1c3168790186ec25 101 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 31.559 T 26-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19570 69a88052db6a26fd1c3168790186ec25 101 Pfam PF00699 Urease beta subunit 3 99 6.4E-44 T 26-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19570 69a88052db6a26fd1c3168790186ec25 101 PANTHER PTHR33569 1 101 1.5E-61 T 26-04-2016 RGE_RS19570 69a88052db6a26fd1c3168790186ec25 101 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 100 1.2E-42 T 26-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19570 69a88052db6a26fd1c3168790186ec25 101 SUPERFAMILY SSF51278 1 101 5.23E-46 T 26-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RGE_RS19570 69a88052db6a26fd1c3168790186ec25 101 PANTHER PTHR33569:SF1 1 101 1.5E-61 T 26-04-2016 RGE_RS15905 2930c5b54700eb656aa04cf1147fd8a1 208 SUPERFAMILY SSF54001 68 193 1.41E-42 T 26-04-2016 RGE_RS15905 2930c5b54700eb656aa04cf1147fd8a1 208 Gene3D G3DSA:3.90.1720.10 68 193 1.4E-45 T 26-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS15905 2930c5b54700eb656aa04cf1147fd8a1 208 PANTHER PTHR21666 74 192 2.6E-39 T 26-04-2016 RGE_RS15905 2930c5b54700eb656aa04cf1147fd8a1 208 PANTHER PTHR21666 22 38 2.6E-39 T 26-04-2016 RGE_RS15905 2930c5b54700eb656aa04cf1147fd8a1 208 Pfam PF00877 NlpC/P60 family 83 192 3.7E-30 T 26-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS14385 00ac00c345f786a526a6dd6d0ef73775 372 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 277 2.2E-11 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS14385 00ac00c345f786a526a6dd6d0ef73775 372 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 358 1.2E-68 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS14385 00ac00c345f786a526a6dd6d0ef73775 372 SUPERFAMILY SSF111369 47 282 8.5E-59 T 26-04-2016 RGE_RS14385 00ac00c345f786a526a6dd6d0ef73775 372 PANTHER PTHR30158 8 362 5.6E-87 T 26-04-2016 RGE_RS14385 00ac00c345f786a526a6dd6d0ef73775 372 Gene3D G3DSA:2.40.50.100 168 201 1.2E-20 T 26-04-2016 RGE_RS14385 00ac00c345f786a526a6dd6d0ef73775 372 Gene3D G3DSA:2.40.50.100 60 93 1.2E-20 T 26-04-2016 RGE_RS22455 f65d99c82fb93d8e115a3b6e9f5ac532 206 Gene3D G3DSA:2.60.450.10 26 175 1.6E-27 T 26-04-2016 RGE_RS22455 f65d99c82fb93d8e115a3b6e9f5ac532 206 PANTHER PTHR36504 1 197 6.2E-13 T 26-04-2016 RGE_RS22455 f65d99c82fb93d8e115a3b6e9f5ac532 206 Pfam PF03968 OstA-like protein 36 143 1.2E-21 T 26-04-2016 IPR005653 Organic solvent tolerance-like, N-terminal RGE_RS22455 f65d99c82fb93d8e115a3b6e9f5ac532 206 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 7 179 23.464 T 26-04-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 RGE_RS22455 f65d99c82fb93d8e115a3b6e9f5ac532 206 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 25 178 2.2E-34 T 26-04-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 RGE_RS05685 c46fe37a22f2093000cf45075676d1e7 126 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 82 99 - T 26-04-2016 IPR001882 Biotin-binding site RGE_RS05685 c46fe37a22f2093000cf45075676d1e7 126 Pfam PF00364 Biotin-requiring enzyme 66 125 4.1E-17 T 26-04-2016 IPR000089 Biotin/lipoyl attachment RGE_RS05685 c46fe37a22f2093000cf45075676d1e7 126 Gene3D G3DSA:2.40.50.100 56 126 4.8E-23 T 26-04-2016 RGE_RS05685 c46fe37a22f2093000cf45075676d1e7 126 PANTHER PTHR18866:SF103 60 125 5.9E-15 T 26-04-2016 RGE_RS05685 c46fe37a22f2093000cf45075676d1e7 126 PANTHER PTHR18866 60 125 5.9E-15 T 26-04-2016 RGE_RS05685 c46fe37a22f2093000cf45075676d1e7 126 SUPERFAMILY SSF51230 48 125 5.23E-21 T 26-04-2016 IPR011053 Single hybrid motif RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 2 375 32.199 T 26-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 123 2.5E-24 T 26-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 148 361 4.3E-52 T 26-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 Gene3D G3DSA:3.40.50.720 4 144 1.3E-58 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 Gene3D G3DSA:3.30.360.10 145 358 2.7E-68 T 26-04-2016 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 SUPERFAMILY SSF55347 136 362 2.07E-68 T 26-04-2016 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 5 375 2.0E-178 T 26-04-2016 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 SMART SM00859 4 124 1.1E-24 T 26-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 PANTHER PTHR10174 203 377 7.1E-132 T 26-04-2016 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 PANTHER PTHR10174 105 181 7.1E-132 T 26-04-2016 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 PIRSF PIRSF000148 2 377 7.8E-60 T 26-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 269 283 - T 26-04-2016 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 PANTHER PTHR10174:SF116 203 377 7.1E-132 T 26-04-2016 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 PANTHER PTHR10174:SF116 105 181 7.1E-132 T 26-04-2016 RGE_RS06110 7c155d92bd35adc20fba046ef50f5260 377 SUPERFAMILY SSF51735 5 149 3.23E-50 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS09020 d1e7d699825fc7936677980809f3317d 228 Gene3D G3DSA:3.40.50.2300 4 121 3.3E-20 T 26-04-2016 RGE_RS09020 d1e7d699825fc7936677980809f3317d 228 SUPERFAMILY SSF52172 3 128 7.83E-22 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS09020 d1e7d699825fc7936677980809f3317d 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 7.6E-13 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS09020 d1e7d699825fc7936677980809f3317d 228 SMART SM00862 145 221 1.8E-10 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS09020 d1e7d699825fc7936677980809f3317d 228 PANTHER PTHR26402:SF578 4 227 2.6E-31 T 26-04-2016 RGE_RS09020 d1e7d699825fc7936677980809f3317d 228 PANTHER PTHR26402 4 227 2.6E-31 T 26-04-2016 RGE_RS09020 d1e7d699825fc7936677980809f3317d 228 Gene3D G3DSA:1.10.10.10 130 224 2.2E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS09020 d1e7d699825fc7936677980809f3317d 228 SMART SM00448 4 114 1.0E-15 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS09020 d1e7d699825fc7936677980809f3317d 228 SUPERFAMILY SSF46894 130 222 1.96E-14 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS09020 d1e7d699825fc7936677980809f3317d 228 Pfam PF00072 Response regulator receiver domain 6 114 8.4E-15 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS18345 3925f2f3e7824b763e3197d753eff475 877 SUPERFAMILY SSF52540 1 91 2.25E-16 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18345 3925f2f3e7824b763e3197d753eff475 877 SUPERFAMILY SSF52540 703 863 2.25E-16 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18345 3925f2f3e7824b763e3197d753eff475 877 SUPERFAMILY SSF52540 128 234 2.25E-16 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18345 3925f2f3e7824b763e3197d753eff475 877 Pfam PF13476 AAA domain 5 90 1.4E-8 T 26-04-2016 RGE_RS18345 3925f2f3e7824b763e3197d753eff475 877 Gene3D G3DSA:3.40.50.300 232 233 2.1E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18345 3925f2f3e7824b763e3197d753eff475 877 Gene3D G3DSA:3.40.50.300 733 861 2.1E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18345 3925f2f3e7824b763e3197d753eff475 877 Gene3D G3DSA:3.40.50.300 1 87 2.1E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12755 261c5e6a893f5645b073f482573ebb39 433 PANTHER PTHR13847 13 430 2.0E-141 T 26-04-2016 RGE_RS12755 261c5e6a893f5645b073f482573ebb39 433 PANTHER PTHR13847:SF210 13 430 2.0E-141 T 26-04-2016 RGE_RS12755 261c5e6a893f5645b073f482573ebb39 433 Gene3D G3DSA:3.50.50.60 28 125 2.1E-53 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS12755 261c5e6a893f5645b073f482573ebb39 433 Gene3D G3DSA:3.50.50.60 350 408 2.1E-53 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS12755 261c5e6a893f5645b073f482573ebb39 433 Gene3D G3DSA:3.50.50.60 178 257 2.1E-53 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS12755 261c5e6a893f5645b073f482573ebb39 433 Pfam PF01266 FAD dependent oxidoreductase 36 388 9.6E-54 T 26-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RGE_RS12755 261c5e6a893f5645b073f482573ebb39 433 SUPERFAMILY SSF51905 350 426 2.37E-51 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS12755 261c5e6a893f5645b073f482573ebb39 433 SUPERFAMILY SSF51905 35 258 2.37E-51 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS15995 5213e4a45cd526504805af95717d0b50 98 SUPERFAMILY SSF55718 14 97 3.06E-18 T 26-04-2016 IPR003033 SCP2 sterol-binding domain RGE_RS15995 5213e4a45cd526504805af95717d0b50 98 Pfam PF02036 SCP-2 sterol transfer family 13 97 6.8E-16 T 26-04-2016 IPR003033 SCP2 sterol-binding domain RGE_RS15995 5213e4a45cd526504805af95717d0b50 98 Gene3D G3DSA:3.30.1050.10 14 97 1.2E-19 T 26-04-2016 IPR003033 SCP2 sterol-binding domain RGE_RS15995 5213e4a45cd526504805af95717d0b50 98 PANTHER PTHR24314:SF13 46 98 7.0E-12 T 26-04-2016 RGE_RS15995 5213e4a45cd526504805af95717d0b50 98 PANTHER PTHR24314 46 98 7.0E-12 T 26-04-2016 RGE_RS14815 b0869fa72654137c476765ca984d0db1 807 SMART SM00965 68 119 1.3E-9 T 26-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RGE_RS14815 b0869fa72654137c476765ca984d0db1 807 SUPERFAMILY SSF56935 124 807 2.14E-124 T 26-04-2016 RGE_RS14815 b0869fa72654137c476765ca984d0db1 807 Gene3D G3DSA:2.170.130.10 149 278 9.7E-37 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14815 b0869fa72654137c476765ca984d0db1 807 Gene3D G3DSA:2.40.170.20 285 807 3.2E-120 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14815 b0869fa72654137c476765ca984d0db1 807 PANTHER PTHR32552 109 139 3.9E-203 T 26-04-2016 RGE_RS14815 b0869fa72654137c476765ca984d0db1 807 PANTHER PTHR32552 161 807 3.9E-203 T 26-04-2016 RGE_RS14815 b0869fa72654137c476765ca984d0db1 807 Pfam PF07715 TonB-dependent Receptor Plug Domain 169 270 7.9E-17 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS14815 b0869fa72654137c476765ca984d0db1 807 Pfam PF00593 TonB dependent receptor 572 806 3.4E-29 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS14815 b0869fa72654137c476765ca984d0db1 807 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 171 807 1.2E-92 T 26-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 RGE_RS14815 b0869fa72654137c476765ca984d0db1 807 PANTHER PTHR32552:SF37 109 139 3.9E-203 T 26-04-2016 RGE_RS14815 b0869fa72654137c476765ca984d0db1 807 PANTHER PTHR32552:SF37 161 807 3.9E-203 T 26-04-2016 RGE_RS19425 a782547d02a5eb003a8136926e048773 391 Pfam PF00083 Sugar (and other) transporter 63 186 1.9E-5 T 26-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RGE_RS19425 a782547d02a5eb003a8136926e048773 391 Gene3D G3DSA:1.20.1250.20 214 388 2.7E-10 T 26-04-2016 RGE_RS19425 a782547d02a5eb003a8136926e048773 391 SUPERFAMILY SSF103473 13 388 4.71E-30 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS19425 a782547d02a5eb003a8136926e048773 391 PANTHER PTHR23521 21 391 2.1E-31 T 26-04-2016 RGE_RS19425 a782547d02a5eb003a8136926e048773 391 Gene3D G3DSA:1.20.1250.20 24 196 1.1E-15 T 26-04-2016 RGE_RS20180 f6de61c815846f312282ee6201ca1c3d 293 Gene3D G3DSA:3.90.550.10 3 267 9.9E-69 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS20180 f6de61c815846f312282ee6201ca1c3d 293 PANTHER PTHR22572 4 271 3.3E-178 T 26-04-2016 RGE_RS20180 f6de61c815846f312282ee6201ca1c3d 293 SUPERFAMILY SSF53448 3 288 2.17E-93 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS20180 f6de61c815846f312282ee6201ca1c3d 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 4 288 2.3E-155 T 26-04-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 RGE_RS20180 f6de61c815846f312282ee6201ca1c3d 293 PANTHER PTHR22572:SF105 4 271 3.3E-178 T 26-04-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 RGE_RS20180 f6de61c815846f312282ee6201ca1c3d 293 Pfam PF00483 Nucleotidyl transferase 5 240 6.8E-70 T 26-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RGE_RS10525 0b15a54828c4ba712e1850d4ce7d06e7 418 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 6 418 1.3E-139 T 26-04-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 RGE_RS10525 0b15a54828c4ba712e1850d4ce7d06e7 418 Pfam PF12704 MacB-like periplasmic core domain 30 247 2.6E-20 T 26-04-2016 IPR025857 MacB-like periplasmic core domain RGE_RS10525 0b15a54828c4ba712e1850d4ce7d06e7 418 PANTHER PTHR30489 1 418 6.9E-100 T 26-04-2016 RGE_RS10525 0b15a54828c4ba712e1850d4ce7d06e7 418 PANTHER PTHR30489:SF8 1 418 6.9E-100 T 26-04-2016 RGE_RS10525 0b15a54828c4ba712e1850d4ce7d06e7 418 Pfam PF02687 FtsX-like permease family 278 411 1.8E-15 T 26-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RGE_RS16330 f87ff122aa04b6af6e07314fa1a1ca31 253 SUPERFAMILY SSF81490 8 43 6.67E-15 T 26-04-2016 RGE_RS16330 f87ff122aa04b6af6e07314fa1a1ca31 253 Pfam PF05239 PRC-barrel domain 143 207 9.0E-14 T 26-04-2016 IPR027275 PRC-barrel domain RGE_RS16330 f87ff122aa04b6af6e07314fa1a1ca31 253 SUPERFAMILY SSF50346 36 250 7.65E-76 T 26-04-2016 IPR011033 PRC-barrel-like RGE_RS16330 f87ff122aa04b6af6e07314fa1a1ca31 253 Pfam PF03967 Photosynthetic reaction centre, H-chain N-terminal region 4 133 2.6E-51 T 26-04-2016 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal GO:0019684|GO:0030077|GO:0045156 RGE_RS16330 f87ff122aa04b6af6e07314fa1a1ca31 253 Gene3D G3DSA:3.90.50.10 115 253 8.7E-58 T 26-04-2016 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal GO:0019684|GO:0030077|GO:0045156 RGE_RS16330 f87ff122aa04b6af6e07314fa1a1ca31 253 Gene3D G3DSA:4.10.540.10 3 113 8.7E-41 T 26-04-2016 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal GO:0019684|GO:0030077|GO:0045156 RGE_RS16330 f87ff122aa04b6af6e07314fa1a1ca31 253 TIGRFAM TIGR01150 puhA: photosynthetic reaction center H subunit 1 248 8.2E-87 T 26-04-2016 IPR005652 Photosynthetic reaction centre, H subunit GO:0019684|GO:0030077|GO:0045156 RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 1.2E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 1.2E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.2E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.2E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.2E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 1.2E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PANTHER PTHR24322 17 145 1.4E-95 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PANTHER PTHR24322 161 197 1.4E-95 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 Gene3D G3DSA:3.40.50.720 8 256 8.5E-83 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 8.1E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 8.1E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 8.1E-13 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 254 6.0E-63 T 26-04-2016 RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 26-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 SUPERFAMILY SSF51735 8 256 2.61E-78 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PANTHER PTHR24322:SF536 17 145 1.4E-95 T 26-04-2016 RGE_RS02695 eb0a0dd0cbe2472d318847ef8422382b 262 PANTHER PTHR24322:SF536 161 197 1.4E-95 T 26-04-2016 RGE_RS08810 0ea9175eea4842ede8ce5576c2a3ff7d 182 Pfam PF15615 TerB-C domain 37 157 2.5E-20 T 26-04-2016 IPR028932 TerB-C domain RGE_RS17035 bf65af62d098c473def6afdd159e660c 378 Pfam PF00005 ABC transporter 42 182 1.9E-34 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS17035 bf65af62d098c473def6afdd159e660c 378 SMART SM00382 49 232 7.9E-16 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS17035 bf65af62d098c473def6afdd159e660c 378 Gene3D G3DSA:3.40.50.300 16 256 1.3E-77 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17035 bf65af62d098c473def6afdd159e660c 378 SUPERFAMILY SSF52540 24 258 1.15E-85 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17035 bf65af62d098c473def6afdd159e660c 378 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS17035 bf65af62d098c473def6afdd159e660c 378 PANTHER PTHR24220 279 336 6.3E-159 T 26-04-2016 RGE_RS17035 bf65af62d098c473def6afdd159e660c 378 PANTHER PTHR24220 25 261 6.3E-159 T 26-04-2016 RGE_RS17035 bf65af62d098c473def6afdd159e660c 378 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 55 346 8.7E-108 T 26-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 RGE_RS17035 bf65af62d098c473def6afdd159e660c 378 SUPERFAMILY SSF50331 261 371 5.67E-15 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS17035 bf65af62d098c473def6afdd159e660c 378 PANTHER PTHR24220:SF402 279 336 6.3E-159 T 26-04-2016 RGE_RS17035 bf65af62d098c473def6afdd159e660c 378 PANTHER PTHR24220:SF402 25 261 6.3E-159 T 26-04-2016 RGE_RS17035 bf65af62d098c473def6afdd159e660c 378 Pfam PF08402 TOBE domain 300 372 4.8E-12 T 26-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RGE_RS18875 29bc4e0e6836891d716f04ba049eb3d3 305 PIRSF PIRSF016660 1 303 9.2E-119 T 26-04-2016 IPR008526 Inner membrane protein YedI RGE_RS18875 29bc4e0e6836891d716f04ba049eb3d3 305 Pfam PF05661 Protein of unknown function (DUF808) 4 291 2.8E-112 T 26-04-2016 IPR008526 Inner membrane protein YedI RGE_RS18875 29bc4e0e6836891d716f04ba049eb3d3 305 PANTHER PTHR30503 2 302 1.2E-95 T 26-04-2016 RGE_RS11460 220e22a7c140096dd44951a13f0b8290 314 Pfam PF00850 Histone deacetylase domain 24 286 1.4E-46 T 26-04-2016 IPR023801 Histone deacetylase domain RGE_RS11460 220e22a7c140096dd44951a13f0b8290 314 SUPERFAMILY SSF52768 4 287 2.64E-73 T 26-04-2016 RGE_RS11460 220e22a7c140096dd44951a13f0b8290 314 PANTHER PTHR10625:SF131 7 298 1.8E-100 T 26-04-2016 RGE_RS11460 220e22a7c140096dd44951a13f0b8290 314 PRINTS PR01270 Histone deacetylase superfamily signature 230 240 2.3E-6 T 26-04-2016 IPR000286 Histone deacetylase superfamily RGE_RS11460 220e22a7c140096dd44951a13f0b8290 314 PRINTS PR01270 Histone deacetylase superfamily signature 115 138 2.3E-6 T 26-04-2016 IPR000286 Histone deacetylase superfamily RGE_RS11460 220e22a7c140096dd44951a13f0b8290 314 Gene3D G3DSA:3.40.800.20 4 287 3.9E-60 T 26-04-2016 IPR023801 Histone deacetylase domain RGE_RS11460 220e22a7c140096dd44951a13f0b8290 314 PANTHER PTHR10625 7 298 1.8E-100 T 26-04-2016 IPR000286 Histone deacetylase superfamily RGE_RS04370 4de13ab9cd1e9d6235d1881a9ef38a65 414 SUPERFAMILY SSF103473 9 410 2.62E-89 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS04370 4de13ab9cd1e9d6235d1881a9ef38a65 414 Pfam PF07690 Major Facilitator Superfamily 32 265 2.5E-44 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS04370 4de13ab9cd1e9d6235d1881a9ef38a65 414 PANTHER PTHR23501 14 410 1.0E-62 T 26-04-2016 RGE_RS04370 4de13ab9cd1e9d6235d1881a9ef38a65 414 Gene3D G3DSA:1.20.1250.20 25 213 7.0E-42 T 26-04-2016 RGE_RS04370 4de13ab9cd1e9d6235d1881a9ef38a65 414 Gene3D G3DSA:1.20.1250.20 226 411 1.0E-33 T 26-04-2016 RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 135 151 5.9E-45 T 26-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 198 207 5.9E-45 T 26-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 89 100 5.9E-45 T 26-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 170 183 5.9E-45 T 26-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 114 132 5.9E-45 T 26-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 154 167 5.9E-45 T 26-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 6 317 50.07 T 26-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 SUPERFAMILY SSF52096 7 317 1.91E-101 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 Gene3D G3DSA:3.90.226.10 59 282 3.8E-48 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 PANTHER PTHR22855 6 319 4.1E-125 T 26-04-2016 RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 5 320 4.5E-152 T 26-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 PANTHER PTHR22855:SF42 6 319 4.1E-125 T 26-04-2016 RGE_RS15395 89ab0c66e728af2e63516fb2c815116e 323 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 7 149 4.7E-66 T 26-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RGE_RS04560 370301b2432306fb3c8aa333b5565765 140 PANTHER PTHR11049 10 140 9.9E-46 T 26-04-2016 RGE_RS04560 370301b2432306fb3c8aa333b5565765 140 SUPERFAMILY SSF54637 21 140 1.24E-33 T 26-04-2016 IPR029069 HotDog domain RGE_RS04560 370301b2432306fb3c8aa333b5565765 140 PANTHER PTHR11049:SF5 10 140 9.9E-46 T 26-04-2016 RGE_RS04560 370301b2432306fb3c8aa333b5565765 140 Pfam PF03061 Thioesterase superfamily 37 109 1.9E-15 T 26-04-2016 IPR006683 Thioesterase domain RGE_RS04560 370301b2432306fb3c8aa333b5565765 140 Gene3D G3DSA:3.10.129.10 20 140 5.0E-35 T 26-04-2016 IPR029069 HotDog domain RGE_RS15535 b2cd9b0229e682c7a380e14dee210a92 206 PANTHER PTHR10422 29 166 6.7E-84 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS15535 b2cd9b0229e682c7a380e14dee210a92 206 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 13 186 1.7E-89 T 26-04-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO RGE_RS15535 b2cd9b0229e682c7a380e14dee210a92 206 Gene3D G3DSA:1.10.760.10 21 202 9.2E-38 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS15535 b2cd9b0229e682c7a380e14dee210a92 206 SUPERFAMILY SSF46626 20 199 2.3E-28 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS15535 b2cd9b0229e682c7a380e14dee210a92 206 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 10 186 1.3E-84 T 26-04-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO RGE_RS15535 b2cd9b0229e682c7a380e14dee210a92 206 PANTHER PTHR10422:SF23 29 166 6.7E-84 T 26-04-2016 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 Pfam PF00246 Zinc carboxypeptidase 20 347 3.6E-57 T 26-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 SUPERFAMILY SSF53187 7 145 3.89E-57 T 26-04-2016 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 SUPERFAMILY SSF53187 219 348 3.89E-57 T 26-04-2016 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 219 227 1.0E-11 T 26-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 64 78 1.0E-11 T 26-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 266 279 1.0E-11 T 26-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 38 50 1.0E-11 T 26-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 PANTHER PTHR11705:SF56 203 347 4.1E-48 T 26-04-2016 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 PANTHER PTHR11705:SF56 9 140 4.1E-48 T 26-04-2016 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 SMART SM00631 12 356 3.3E-32 T 26-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 PANTHER PTHR11705 203 347 4.1E-48 T 26-04-2016 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 PANTHER PTHR11705 9 140 4.1E-48 T 26-04-2016 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 Gene3D G3DSA:3.40.630.10 7 140 9.9E-67 T 26-04-2016 RGE_RS22390 0338c87ec94b668a3043e6c729672c0b 565 Gene3D G3DSA:3.40.630.10 219 347 9.9E-67 T 26-04-2016 RGE_RS02890 40f9bf821b8ed1fb27c9df601d6eb8d5 275 SUPERFAMILY SSF81345 2 251 3.53E-23 T 26-04-2016 IPR029022 ABC transporter, BtuC-like RGE_RS02890 40f9bf821b8ed1fb27c9df601d6eb8d5 275 PANTHER PTHR30477:SF3 1 275 4.0E-57 T 26-04-2016 RGE_RS02890 40f9bf821b8ed1fb27c9df601d6eb8d5 275 PANTHER PTHR30477 1 275 4.0E-57 T 26-04-2016 RGE_RS02890 40f9bf821b8ed1fb27c9df601d6eb8d5 275 Pfam PF00950 ABC 3 transport family 1 256 1.2E-54 T 26-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RGE_RS14850 5a437b7099e49a8f4da26c59c10a5559 313 PIRSF PIRSF018266 1 313 1.1E-89 T 26-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RGE_RS14850 5a437b7099e49a8f4da26c59c10a5559 313 Pfam PF04773 FecR protein 108 201 4.4E-19 T 26-04-2016 IPR006860 FecR protein RGE_RS14850 5a437b7099e49a8f4da26c59c10a5559 313 PANTHER PTHR30273:SF3 4 313 2.5E-90 T 26-04-2016 RGE_RS14850 5a437b7099e49a8f4da26c59c10a5559 313 Pfam PF16220 Domain of unknown function (DUF4880) 13 52 1.6E-9 T 26-04-2016 IPR032623 FecR, N-terminal RGE_RS14850 5a437b7099e49a8f4da26c59c10a5559 313 PANTHER PTHR30273 4 313 2.5E-90 T 26-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RGE_RS19830 788a0529d56da86cb6641a06689df64b 175 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 28 173 1.9E-33 T 26-04-2016 IPR019587 Polyketide cyclase/dehydrase RGE_RS19830 788a0529d56da86cb6641a06689df64b 175 Gene3D G3DSA:3.30.530.20 29 174 1.9E-41 T 26-04-2016 IPR023393 START-like domain RGE_RS19830 788a0529d56da86cb6641a06689df64b 175 PANTHER PTHR39332 19 175 4.6E-39 T 26-04-2016 RGE_RS19830 788a0529d56da86cb6641a06689df64b 175 PANTHER PTHR39332:SF2 19 175 4.6E-39 T 26-04-2016 RGE_RS19830 788a0529d56da86cb6641a06689df64b 175 SUPERFAMILY SSF55961 29 173 1.36E-29 T 26-04-2016 RGE_RS17585 d61735d93bce9741388430772c58446f 144 SMART SM00961 10 109 5.7E-51 T 26-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RGE_RS17585 d61735d93bce9741388430772c58446f 144 PANTHER PTHR31262:SF6 12 123 3.2E-51 T 26-04-2016 RGE_RS17585 d61735d93bce9741388430772c58446f 144 PANTHER PTHR31262 12 123 3.2E-51 T 26-04-2016 RGE_RS17585 d61735d93bce9741388430772c58446f 144 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 11 109 5.9E-38 T 26-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RGE_RS17585 d61735d93bce9741388430772c58446f 144 Gene3D G3DSA:3.30.190.10 8 144 7.5E-53 T 26-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RGE_RS17585 d61735d93bce9741388430772c58446f 144 SUPERFAMILY SSF55239 8 144 9.81E-54 T 26-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RGE_RS07405 ce96198baf6c1238d96e615d11638569 252 SMART SM00382 26 212 1.6E-14 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS07405 ce96198baf6c1238d96e615d11638569 252 Gene3D G3DSA:3.40.50.300 7 221 1.7E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07405 ce96198baf6c1238d96e615d11638569 252 SUPERFAMILY SSF52540 11 217 2.49E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07405 ce96198baf6c1238d96e615d11638569 252 Pfam PF00005 ABC transporter 25 165 1.0E-29 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS07405 ce96198baf6c1238d96e615d11638569 252 PANTHER PTHR24220 4 217 2.7E-63 T 26-04-2016 RGE_RS07405 ce96198baf6c1238d96e615d11638569 252 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS07405 ce96198baf6c1238d96e615d11638569 252 PANTHER PTHR24220:SF558 4 217 2.7E-63 T 26-04-2016 RGE_RS04820 11b6becb0ac4d12c3985008fc85f0f14 94 Pfam PF01909 Nucleotidyltransferase domain 11 92 2.1E-13 T 26-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RGE_RS04820 11b6becb0ac4d12c3985008fc85f0f14 94 PANTHER PTHR33571 4 91 1.1E-23 T 26-04-2016 RGE_RS04820 11b6becb0ac4d12c3985008fc85f0f14 94 Gene3D G3DSA:3.30.460.10 2 93 2.5E-23 T 26-04-2016 RGE_RS04820 11b6becb0ac4d12c3985008fc85f0f14 94 SUPERFAMILY SSF81301 4 93 1.64E-19 T 26-04-2016 RGE_RS04820 11b6becb0ac4d12c3985008fc85f0f14 94 PANTHER PTHR33571:SF1 4 91 1.1E-23 T 26-04-2016 RGE_RS05280 bf24b39d78b7347aee3e38d5a3d4ac04 576 PANTHER PTHR12631:SF4 193 414 6.6E-22 T 26-04-2016 RGE_RS05280 bf24b39d78b7347aee3e38d5a3d4ac04 576 PANTHER PTHR12631 193 414 6.6E-22 T 26-04-2016 RGE_RS05280 bf24b39d78b7347aee3e38d5a3d4ac04 576 Gene3D G3DSA:3.20.20.80 200 417 2.8E-38 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS05280 bf24b39d78b7347aee3e38d5a3d4ac04 576 SUPERFAMILY SSF51445 197 456 1.38E-41 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS05280 bf24b39d78b7347aee3e38d5a3d4ac04 576 Pfam PF01229 Glycosyl hydrolases family 39 263 349 6.6E-6 T 26-04-2016 IPR000514 Glycoside hydrolase, family 39 GO:0004553|GO:0005975 RGE_RS07325 c3487f8275bb846fcbcc57bde6c6b260 285 SMART SM00079 49 271 7.2E-4 T 26-04-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 RGE_RS07325 c3487f8275bb846fcbcc57bde6c6b260 285 Gene3D G3DSA:3.40.190.10 127 231 9.8E-24 T 26-04-2016 RGE_RS07325 c3487f8275bb846fcbcc57bde6c6b260 285 PANTHER PTHR18966 52 269 7.4E-51 T 26-04-2016 RGE_RS07325 c3487f8275bb846fcbcc57bde6c6b260 285 PANTHER PTHR18966:SF152 52 269 7.4E-51 T 26-04-2016 RGE_RS07325 c3487f8275bb846fcbcc57bde6c6b260 285 Gene3D G3DSA:3.40.190.10 49 126 1.4E-46 T 26-04-2016 RGE_RS07325 c3487f8275bb846fcbcc57bde6c6b260 285 Gene3D G3DSA:3.40.190.10 232 271 1.4E-46 T 26-04-2016 RGE_RS07325 c3487f8275bb846fcbcc57bde6c6b260 285 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 52 270 5.8E-70 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS07325 c3487f8275bb846fcbcc57bde6c6b260 285 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 72 85 - T 26-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 RGE_RS07325 c3487f8275bb846fcbcc57bde6c6b260 285 SUPERFAMILY SSF53850 8 270 2.72E-72 T 26-04-2016 RGE_RS07325 c3487f8275bb846fcbcc57bde6c6b260 285 SMART SM00062 49 272 4.2E-71 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS01560 357cd5c1c01d8d1ac567a08dffeb24c4 172 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 160 25.388 T 26-04-2016 IPR022973 Ribosomal protein L10 RGE_RS01560 357cd5c1c01d8d1ac567a08dffeb24c4 172 Pfam PF00466 Ribosomal protein L10 4 100 2.6E-21 T 26-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 RGE_RS01560 357cd5c1c01d8d1ac567a08dffeb24c4 172 PANTHER PTHR11560 3 160 5.6E-45 T 26-04-2016 RGE_RS01560 357cd5c1c01d8d1ac567a08dffeb24c4 172 SUPERFAMILY SSF160369 4 159 1.12E-47 T 26-04-2016 RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 SMART SM00926 7 62 1.4E-19 T 26-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 SUPERFAMILY SSF53706 8 553 4.19E-154 T 26-04-2016 RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 Pfam PF00384 Molybdopterin oxidoreductase 65 477 8.8E-51 T 26-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 SUPERFAMILY SSF50692 556 679 1.24E-35 T 26-04-2016 IPR009010 Aspartate decarboxylase-like domain RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 Gene3D G3DSA:3.40.50.740 66 143 1.3E-51 T 26-04-2016 RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 Gene3D G3DSA:3.40.50.740 328 534 1.3E-51 T 26-04-2016 RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 Gene3D G3DSA:2.40.40.20 543 680 3.3E-39 T 26-04-2016 RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 8 62 4.0E-12 T 26-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 Gene3D G3DSA:3.40.228.10 154 327 9.7E-54 T 26-04-2016 RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 PANTHER PTHR11615:SF127 8 681 6.4E-194 T 26-04-2016 RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 Pfam PF01568 Molydopterin dinucleotide binding domain 565 674 2.5E-24 T 26-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 Gene3D G3DSA:2.20.25.90 6 65 7.1E-18 T 26-04-2016 RGE_RS04145 eb02cc00b3c46b7a283ef8ecc4d4e9c9 681 PANTHER PTHR11615 8 681 6.4E-194 T 26-04-2016 RGE_RS15545 b2040de2f7ce49fe2da9a2a54534a8f7 78 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 2.3E-19 T 26-04-2016 IPR004714 Cytochrome oxidase maturation protein cbb3-type RGE_RS15545 b2040de2f7ce49fe2da9a2a54534a8f7 78 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 46 3.6E-13 T 26-04-2016 IPR004714 Cytochrome oxidase maturation protein cbb3-type RGE_RS15545 b2040de2f7ce49fe2da9a2a54534a8f7 78 PANTHER PTHR41532 2 69 4.0E-13 T 26-04-2016 RGE_RS05010 d0dc45a552c271f452ec14625709504a 161 Pfam PF09335 SNARE associated Golgi protein 52 149 1.9E-10 T 26-04-2016 IPR032816 SNARE associated Golgi protein RGE_RS05010 d0dc45a552c271f452ec14625709504a 161 PANTHER PTHR30353 5 148 2.2E-34 T 26-04-2016 IPR032818 DedA family RGE_RS05010 d0dc45a552c271f452ec14625709504a 161 PANTHER PTHR30353:SF12 5 148 2.2E-34 T 26-04-2016 RGE_RS10135 76c853b08976b682c244529e7a6664fc 162 SUPERFAMILY SSF52788 5 139 2.09E-35 T 26-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RGE_RS10135 76c853b08976b682c244529e7a6664fc 162 PANTHER PTHR11717 7 141 3.3E-27 T 26-04-2016 RGE_RS10135 76c853b08976b682c244529e7a6664fc 162 PANTHER PTHR11717:SF18 7 141 3.3E-27 T 26-04-2016 RGE_RS10135 76c853b08976b682c244529e7a6664fc 162 SMART SM00226 6 142 1.3E-27 T 26-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RGE_RS10135 76c853b08976b682c244529e7a6664fc 162 Gene3D G3DSA:3.40.50.270 5 139 1.4E-37 T 26-04-2016 RGE_RS10135 76c853b08976b682c244529e7a6664fc 162 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 8 137 7.9E-17 T 26-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RGE_RS21410 40375cb5da935ff078992a23a2ae1c53 227 PANTHER PTHR41536:SF1 2 227 7.1E-99 T 26-04-2016 RGE_RS21410 40375cb5da935ff078992a23a2ae1c53 227 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 227 46.03 T 26-04-2016 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 RGE_RS21410 40375cb5da935ff078992a23a2ae1c53 227 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 84 177 7.8E-15 T 26-04-2016 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 RGE_RS21410 40375cb5da935ff078992a23a2ae1c53 227 SMART SM00702 1 178 1.5E-14 T 26-04-2016 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 RGE_RS21410 40375cb5da935ff078992a23a2ae1c53 227 PANTHER PTHR41536 2 227 7.1E-99 T 26-04-2016 RGE_RS00390 5c80611774da879b78e7189ebc86b044 230 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 230 4.9E-74 T 26-04-2016 IPR011078 Uncharacterised protein family UPF0001 RGE_RS00390 5c80611774da879b78e7189ebc86b044 230 PIRSF PIRSF004848 1 230 2.3E-71 T 26-04-2016 IPR011078 Uncharacterised protein family UPF0001 RGE_RS00390 5c80611774da879b78e7189ebc86b044 230 PANTHER PTHR10146 3 230 3.8E-99 T 26-04-2016 IPR011078 Uncharacterised protein family UPF0001 RGE_RS00390 5c80611774da879b78e7189ebc86b044 230 SUPERFAMILY SSF51419 2 228 3.93E-79 T 26-04-2016 IPR029066 PLP-binding barrel RGE_RS00390 5c80611774da879b78e7189ebc86b044 230 Gene3D G3DSA:3.20.20.10 3 230 6.9E-92 T 26-04-2016 IPR029066 PLP-binding barrel RGE_RS00390 5c80611774da879b78e7189ebc86b044 230 Pfam PF01168 Alanine racemase, N-terminal domain 7 229 7.0E-32 T 26-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RGE_RS05565 ebc2e2490cb01453cbdee861728458e6 438 PANTHER PTHR11986 17 437 4.8E-245 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS05565 ebc2e2490cb01453cbdee861728458e6 438 Pfam PF00202 Aminotransferase class-III 27 429 1.7E-90 T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS05565 ebc2e2490cb01453cbdee861728458e6 438 PANTHER PTHR11986:SF87 17 437 4.8E-245 T 26-04-2016 RGE_RS05565 ebc2e2490cb01453cbdee861728458e6 438 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 240 277 - T 26-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RGE_RS05565 ebc2e2490cb01453cbdee861728458e6 438 Gene3D G3DSA:3.90.1150.10 313 432 3.8E-37 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS05565 ebc2e2490cb01453cbdee861728458e6 438 SUPERFAMILY SSF53383 7 432 2.21E-118 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS05565 ebc2e2490cb01453cbdee861728458e6 438 Gene3D G3DSA:3.40.640.10 61 312 2.7E-71 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS14485 49157d477611abdaacb77178d366ac41 380 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 73 287 9.4E-14 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS14485 49157d477611abdaacb77178d366ac41 380 PANTHER PTHR30469:SF15 23 378 2.9E-66 T 26-04-2016 RGE_RS14485 49157d477611abdaacb77178d366ac41 380 PANTHER PTHR30469 23 378 2.9E-66 T 26-04-2016 RGE_RS14485 49157d477611abdaacb77178d366ac41 380 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 49 367 9.2E-56 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS14485 49157d477611abdaacb77178d366ac41 380 Gene3D G3DSA:2.40.50.100 183 215 3.0E-9 T 26-04-2016 RGE_RS14485 49157d477611abdaacb77178d366ac41 380 Gene3D G3DSA:2.40.50.100 85 108 3.0E-9 T 26-04-2016 RGE_RS14485 49157d477611abdaacb77178d366ac41 380 SUPERFAMILY SSF111369 65 288 5.75E-20 T 26-04-2016 RGE_RS20050 52fe17313374741405090db56972bd51 220 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 18 93 5.1E-14 T 26-04-2016 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 RGE_RS20050 52fe17313374741405090db56972bd51 220 SUPERFAMILY SSF89069 18 83 3.92E-11 T 26-04-2016 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 RGE_RS06375 2123b5ac2d232af7f3946f1d45bbfe42 174 Gene3D G3DSA:3.40.630.30 4 143 1.0E-21 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06375 2123b5ac2d232af7f3946f1d45bbfe42 174 SUPERFAMILY SSF55729 3 143 2.36E-20 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06375 2123b5ac2d232af7f3946f1d45bbfe42 174 PANTHER PTHR13256 3 143 5.4E-12 T 26-04-2016 RGE_RS06375 2123b5ac2d232af7f3946f1d45bbfe42 174 Pfam PF13302 Acetyltransferase (GNAT) domain 4 140 6.6E-14 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS16955 80f4d049100b8f5dec267c00cbe2ad26 407 Pfam PF07690 Major Facilitator Superfamily 17 333 2.0E-26 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS16955 80f4d049100b8f5dec267c00cbe2ad26 407 SUPERFAMILY SSF103473 11 395 1.31E-56 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS16955 80f4d049100b8f5dec267c00cbe2ad26 407 Gene3D G3DSA:1.20.1250.20 18 193 2.0E-21 T 26-04-2016 RGE_RS16955 80f4d049100b8f5dec267c00cbe2ad26 407 PANTHER PTHR11360:SF115 9 401 3.3E-130 T 26-04-2016 RGE_RS16955 80f4d049100b8f5dec267c00cbe2ad26 407 PANTHER PTHR11360 9 401 3.3E-130 T 26-04-2016 RGE_RS16955 80f4d049100b8f5dec267c00cbe2ad26 407 Gene3D G3DSA:1.20.1250.20 212 398 7.8E-22 T 26-04-2016 RGE_RS11570 129b7c340b6103d8302743a9df57a029 563 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 73 238 2.2E-67 T 26-04-2016 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.- RGE_RS11570 129b7c340b6103d8302743a9df57a029 563 PANTHER PTHR36837:SF2 47 562 1.0E-196 T 26-04-2016 RGE_RS11570 129b7c340b6103d8302743a9df57a029 563 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 36 560 9.9E-220 T 26-04-2016 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00917 RGE_RS11570 129b7c340b6103d8302743a9df57a029 563 Gene3D G3DSA:3.40.50.1820 170 530 1.5E-33 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS11570 129b7c340b6103d8302743a9df57a029 563 SUPERFAMILY SSF53474 197 493 1.01E-35 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS11570 129b7c340b6103d8302743a9df57a029 563 PANTHER PTHR36837 47 562 1.0E-196 T 26-04-2016 RGE_RS10200 bb67ab56304314bebd7c1702e272cb20 184 Pfam PF03079 ARD/ARD' family 22 153 1.4E-21 T 26-04-2016 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|UniPathway: UPA00904 RGE_RS10200 bb67ab56304314bebd7c1702e272cb20 184 PANTHER PTHR23418 1 154 4.1E-17 T 26-04-2016 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|UniPathway: UPA00904 RGE_RS10200 bb67ab56304314bebd7c1702e272cb20 184 SUPERFAMILY SSF51182 17 159 6.77E-19 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS10200 bb67ab56304314bebd7c1702e272cb20 184 Gene3D G3DSA:2.60.120.10 2 158 1.1E-28 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS10200 bb67ab56304314bebd7c1702e272cb20 184 PANTHER PTHR23418:SF0 1 154 4.1E-17 T 26-04-2016 RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.5E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.5E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.5E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.5E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 2.5E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.5E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 PANTHER PTHR24322 157 188 5.8E-49 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 PANTHER PTHR24322 11 140 5.8E-49 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 250 1.5E-65 T 26-04-2016 RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 SUPERFAMILY SSF51735 6 251 1.08E-79 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 Gene3D G3DSA:3.40.50.720 1 251 1.0E-82 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.9E-8 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS03125 a172fecff3d1d2904ceb8379a672087c 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.9E-8 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS10520 6db2a0fa79108f702752dfda78f10f73 224 SMART SM00382 38 224 3.0E-10 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS10520 6db2a0fa79108f702752dfda78f10f73 224 PANTHER PTHR24220:SF111 11 222 3.8E-106 T 26-04-2016 RGE_RS10520 6db2a0fa79108f702752dfda78f10f73 224 SUPERFAMILY SSF52540 10 220 1.5E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10520 6db2a0fa79108f702752dfda78f10f73 224 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS10520 6db2a0fa79108f702752dfda78f10f73 224 Pfam PF00005 ABC transporter 29 177 1.5E-31 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS10520 6db2a0fa79108f702752dfda78f10f73 224 Gene3D G3DSA:3.40.50.300 9 222 1.5E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10520 6db2a0fa79108f702752dfda78f10f73 224 PANTHER PTHR24220 11 222 3.8E-106 T 26-04-2016 RGE_RS01065 83b1c56373e6a5d320b5d0ce4a49ff57 165 PANTHER PTHR30373:SF3 26 164 6.2E-45 T 26-04-2016 RGE_RS01065 83b1c56373e6a5d320b5d0ce4a49ff57 165 PANTHER PTHR30373 26 164 6.2E-45 T 26-04-2016 RGE_RS01065 83b1c56373e6a5d320b5d0ce4a49ff57 165 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 20 140 1.9E-13 T 26-04-2016 IPR007621 TPM domain RGE_RS09650 c82037fc62432bdd786c90cf19f08253 121 PANTHER PTHR30435 2 120 2.2E-33 T 26-04-2016 RGE_RS09650 c82037fc62432bdd786c90cf19f08253 121 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 118 4.3E-23 T 26-04-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 RGE_RS09650 c82037fc62432bdd786c90cf19f08253 121 Pfam PF00460 Flagella basal body rod protein 12 39 2.1E-7 T 26-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RGE_RS09650 c82037fc62432bdd786c90cf19f08253 121 PANTHER PTHR30435:SF12 2 120 2.2E-33 T 26-04-2016 RGE_RS09650 c82037fc62432bdd786c90cf19f08253 121 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 26-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RGE_RS09650 c82037fc62432bdd786c90cf19f08253 121 PIRSF PIRSF002889 1 120 2.5E-29 T 26-04-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 RGE_RS07605 6146e27c080172684875f5685a74b746 112 SUPERFAMILY SSF54292 6 109 3.05E-32 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS07605 6146e27c080172684875f5685a74b746 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 1.2E-52 T 26-04-2016 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 RGE_RS07605 6146e27c080172684875f5685a74b746 112 PANTHER PTHR23426 7 110 9.9E-39 T 26-04-2016 RGE_RS07605 6146e27c080172684875f5685a74b746 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 14 91 1.5E-13 T 26-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RGE_RS07605 6146e27c080172684875f5685a74b746 112 Gene3D G3DSA:3.10.20.30 11 108 4.3E-33 T 26-04-2016 IPR012675 Beta-grasp domain RGE_RS07605 6146e27c080172684875f5685a74b746 112 PRINTS PR00355 Adrenodoxin signature 60 74 3.9E-8 T 26-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RGE_RS07605 6146e27c080172684875f5685a74b746 112 PRINTS PR00355 Adrenodoxin signature 42 52 3.9E-8 T 26-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RGE_RS07605 6146e27c080172684875f5685a74b746 112 PRINTS PR00355 Adrenodoxin signature 83 91 3.9E-8 T 26-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RGE_RS07605 6146e27c080172684875f5685a74b746 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 26-04-2016 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 RGE_RS00240 4d61022dd6576c19dbe65af9136f7f58 254 PANTHER PTHR24220 3 254 1.6E-104 T 26-04-2016 RGE_RS00240 4d61022dd6576c19dbe65af9136f7f58 254 Gene3D G3DSA:3.40.50.300 1 235 5.4E-69 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00240 4d61022dd6576c19dbe65af9136f7f58 254 Pfam PF00005 ABC transporter 26 169 3.4E-26 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS00240 4d61022dd6576c19dbe65af9136f7f58 254 PANTHER PTHR24220:SF432 3 254 1.6E-104 T 26-04-2016 RGE_RS00240 4d61022dd6576c19dbe65af9136f7f58 254 SUPERFAMILY SSF52540 2 232 5.77E-60 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00240 4d61022dd6576c19dbe65af9136f7f58 254 SMART SM00382 34 217 1.1E-10 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS19815 b247f27a4f6b327683284207a4b34ea7 172 Gene3D G3DSA:3.40.30.10 41 152 1.2E-5 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS19815 b247f27a4f6b327683284207a4b34ea7 172 SUPERFAMILY SSF52833 28 77 2.34E-6 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS13530 4daa8d2f20a5f344fbb57a43e7442d28 431 Gene3D G3DSA:1.20.1250.20 230 399 6.2E-11 T 26-04-2016 RGE_RS13530 4daa8d2f20a5f344fbb57a43e7442d28 431 SUPERFAMILY SSF103473 20 401 5.89E-30 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS13530 4daa8d2f20a5f344fbb57a43e7442d28 431 Gene3D G3DSA:1.20.1250.20 59 202 1.6E-9 T 26-04-2016 RGE_RS13530 4daa8d2f20a5f344fbb57a43e7442d28 431 Pfam PF07690 Major Facilitator Superfamily 44 369 2.0E-20 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS13530 4daa8d2f20a5f344fbb57a43e7442d28 431 PANTHER PTHR23513 1 431 3.8E-38 T 26-04-2016 RGE_RS12115 246081b51c74a02572dd2f6a1fd9c0db 398 Gene3D G3DSA:3.40.50.2000 179 379 1.9E-44 T 26-04-2016 RGE_RS12115 246081b51c74a02572dd2f6a1fd9c0db 398 Pfam PF13439 Glycosyltransferase Family 4 21 197 1.1E-32 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS12115 246081b51c74a02572dd2f6a1fd9c0db 398 Pfam PF00534 Glycosyl transferases group 1 206 378 4.7E-39 T 26-04-2016 IPR001296 Glycosyl transferase, family 1 RGE_RS12115 246081b51c74a02572dd2f6a1fd9c0db 398 PANTHER PTHR12526 1 81 3.6E-76 T 26-04-2016 RGE_RS12115 246081b51c74a02572dd2f6a1fd9c0db 398 PANTHER PTHR12526 99 398 3.6E-76 T 26-04-2016 RGE_RS12115 246081b51c74a02572dd2f6a1fd9c0db 398 SUPERFAMILY SSF53756 1 397 1.14E-91 T 26-04-2016 RGE_RS04050 c3f38af6376a02fbc798a1fc6a8d1eba 223 Pfam PF01797 Transposase IS200 like 16 109 9.0E-5 T 26-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RGE_RS04050 c3f38af6376a02fbc798a1fc6a8d1eba 223 SMART SM01321 9 124 8.3E-21 T 26-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RGE_RS04050 c3f38af6376a02fbc798a1fc6a8d1eba 223 Gene3D G3DSA:3.30.70.1290 14 109 5.0E-4 T 26-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RGE_RS04050 c3f38af6376a02fbc798a1fc6a8d1eba 223 SUPERFAMILY SSF143422 3 111 8.63E-17 T 26-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RGE_RS12740 8cb4f2323e6026739ccf1c3e371dd0ad 174 Pfam PF01814 Hemerythrin HHE cation binding domain 22 159 1.9E-14 T 26-04-2016 IPR012312 Haemerythrin-like RGE_RS12740 8cb4f2323e6026739ccf1c3e371dd0ad 174 Gene3D G3DSA:1.20.120.520 16 163 1.7E-29 T 26-04-2016 RGE_RS12525 1d837e73cb7ad55326ff08d71f78aeb2 495 PANTHER PTHR35565:SF3 1 495 3.9E-261 T 26-04-2016 RGE_RS12525 1d837e73cb7ad55326ff08d71f78aeb2 495 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 18 490 6.4E-220 T 26-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath RGE_RS12525 1d837e73cb7ad55326ff08d71f78aeb2 495 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 68 490 3.3E-198 T 26-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath RGE_RS12525 1d837e73cb7ad55326ff08d71f78aeb2 495 PANTHER PTHR35565 1 495 3.9E-261 T 26-04-2016 RGE_RS10855 22ff9694dc93b338521caeef7b6b0378 185 PIRSF PIRSF017018 1 185 6.0E-78 T 26-04-2016 IPR018470 Periplasmic metal-binding protein Tp34-type RGE_RS10855 22ff9694dc93b338521caeef7b6b0378 185 Pfam PF10634 Fe2+ transport protein 23 178 1.5E-68 T 26-04-2016 IPR018470 Periplasmic metal-binding protein Tp34-type RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 PANTHER PTHR24322 24 47 4.2E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 PANTHER PTHR24322 169 205 4.2E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 PANTHER PTHR24322 65 153 4.2E-44 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 95 106 8.3E-24 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 159 8.3E-24 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 8.3E-24 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 21 38 8.3E-24 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 207 8.3E-24 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 SUPERFAMILY SSF51735 16 237 8.41E-63 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 7.5E-9 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 7.5E-9 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 7.5E-9 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 Gene3D G3DSA:3.40.50.720 9 237 8.2E-62 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 20 222 5.6E-4 T 26-04-2016 RGE_RS12125 a7c53a8385efb623bcf8f81bc97281c7 255 Pfam PF00106 short chain dehydrogenase 21 206 8.2E-51 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS17545 f589891046411ca72fe87c2e860c9194 244 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 87 201 6.8E-13 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS17545 f589891046411ca72fe87c2e860c9194 244 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 201 2.7E-19 T 26-04-2016 IPR023214 HAD-like domain RGE_RS17545 f589891046411ca72fe87c2e860c9194 244 PANTHER PTHR18901 3 206 6.5E-58 T 26-04-2016 RGE_RS17545 f589891046411ca72fe87c2e860c9194 244 SUPERFAMILY SSF56784 1 210 1.27E-36 T 26-04-2016 IPR023214 HAD-like domain RGE_RS17545 f589891046411ca72fe87c2e860c9194 244 Gene3D G3DSA:3.40.50.1000 1 17 6.3E-32 T 26-04-2016 IPR023214 HAD-like domain RGE_RS17545 f589891046411ca72fe87c2e860c9194 244 Gene3D G3DSA:3.40.50.1000 102 209 6.3E-32 T 26-04-2016 IPR023214 HAD-like domain RGE_RS17545 f589891046411ca72fe87c2e860c9194 244 PANTHER PTHR18901:SF21 3 206 6.5E-58 T 26-04-2016 RGE_RS17545 f589891046411ca72fe87c2e860c9194 244 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 111 124 8.8E-9 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS17545 f589891046411ca72fe87c2e860c9194 244 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 8.8E-9 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS17545 f589891046411ca72fe87c2e860c9194 244 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 163 183 8.8E-9 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS17545 f589891046411ca72fe87c2e860c9194 244 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 145 161 8.8E-9 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS17545 f589891046411ca72fe87c2e860c9194 244 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 190 203 8.8E-9 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS22915 3f5bb68bebcac8ab5aaa14b9efd6700b 180 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 1 173 1.2E-37 T 26-04-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 RGE_RS22915 3f5bb68bebcac8ab5aaa14b9efd6700b 180 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 2 172 1.9E-26 T 26-04-2016 IPR010664 Lipopolysaccharide assembly, LptC-related RGE_RS04960 b00bc4f5e05f8b3dad4d58c0943bd4e5 191 Gene3D G3DSA:3.30.420.10 1 157 3.5E-57 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS04960 b00bc4f5e05f8b3dad4d58c0943bd4e5 191 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 155 43.853 T 26-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RGE_RS04960 b00bc4f5e05f8b3dad4d58c0943bd4e5 191 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 63 79 4.7E-30 T 26-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RGE_RS04960 b00bc4f5e05f8b3dad4d58c0943bd4e5 191 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 85 101 4.7E-30 T 26-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RGE_RS04960 b00bc4f5e05f8b3dad4d58c0943bd4e5 191 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 4.7E-30 T 26-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RGE_RS04960 b00bc4f5e05f8b3dad4d58c0943bd4e5 191 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 109 128 4.7E-30 T 26-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RGE_RS04960 b00bc4f5e05f8b3dad4d58c0943bd4e5 191 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 140 152 4.7E-30 T 26-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RGE_RS04960 b00bc4f5e05f8b3dad4d58c0943bd4e5 191 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 115 149 - T 26-04-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 RGE_RS04960 b00bc4f5e05f8b3dad4d58c0943bd4e5 191 PANTHER PTHR30194 1 171 3.0E-57 T 26-04-2016 RGE_RS04960 b00bc4f5e05f8b3dad4d58c0943bd4e5 191 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 152 5.8E-46 T 26-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RGE_RS04960 b00bc4f5e05f8b3dad4d58c0943bd4e5 191 SUPERFAMILY SSF53098 1 158 5.31E-47 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS04960 b00bc4f5e05f8b3dad4d58c0943bd4e5 191 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 155 1.1E-46 T 26-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RGE_RS13970 7c780c962fd917ffcfcce72ddaa3bf60 417 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 259 357 3.4E-24 T 26-04-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II RGE_RS13970 7c780c962fd917ffcfcce72ddaa3bf60 417 Gene3D G3DSA:3.40.50.920 250 371 1.0E-23 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS13970 7c780c962fd917ffcfcce72ddaa3bf60 417 Gene3D G3DSA:3.40.50.970 3 246 5.4E-82 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS13970 7c780c962fd917ffcfcce72ddaa3bf60 417 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 14 231 1.1E-66 T 26-04-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 RGE_RS13970 7c780c962fd917ffcfcce72ddaa3bf60 417 SUPERFAMILY SSF52922 250 372 4.97E-26 T 26-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RGE_RS13970 7c780c962fd917ffcfcce72ddaa3bf60 417 PANTHER PTHR32154 1 368 3.4E-142 T 26-04-2016 RGE_RS13970 7c780c962fd917ffcfcce72ddaa3bf60 417 PANTHER PTHR32154:SF21 1 368 3.4E-142 T 26-04-2016 RGE_RS13970 7c780c962fd917ffcfcce72ddaa3bf60 417 SUPERFAMILY SSF52518 4 246 5.89E-66 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS02585 82539aac5ffd0cae2181cb1e0c75ef26 263 Pfam PF12833 Helix-turn-helix domain 179 255 9.3E-23 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS02585 82539aac5ffd0cae2181cb1e0c75ef26 263 Gene3D G3DSA:1.10.10.60 212 253 5.4E-12 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS02585 82539aac5ffd0cae2181cb1e0c75ef26 263 PANTHER PTHR11019 7 263 2.7E-29 T 26-04-2016 RGE_RS02585 82539aac5ffd0cae2181cb1e0c75ef26 263 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 210 251 - T 26-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RGE_RS02585 82539aac5ffd0cae2181cb1e0c75ef26 263 SUPERFAMILY SSF46689 209 256 1.12E-10 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS02585 82539aac5ffd0cae2181cb1e0c75ef26 263 SMART SM00342 173 255 2.8E-23 T 26-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RGE_RS02585 82539aac5ffd0cae2181cb1e0c75ef26 263 SUPERFAMILY SSF51215 10 101 4.84E-17 T 26-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RGE_RS02585 82539aac5ffd0cae2181cb1e0c75ef26 263 Gene3D G3DSA:2.60.120.280 18 153 2.1E-15 T 26-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RGE_RS02585 82539aac5ffd0cae2181cb1e0c75ef26 263 Gene3D G3DSA:1.10.10.60 156 211 6.7E-8 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS02585 82539aac5ffd0cae2181cb1e0c75ef26 263 Pfam PF02311 AraC-like ligand binding domain 20 156 1.0E-17 T 26-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RGE_RS10695 d48852e344b95160a1432148d7d7127d 168 PANTHER PTHR11527 66 167 5.0E-26 T 26-04-2016 IPR031107 Small heat shock protein HSP20 RGE_RS10695 d48852e344b95160a1432148d7d7127d 168 PANTHER PTHR11527:SF122 66 167 5.0E-26 T 26-04-2016 RGE_RS10695 d48852e344b95160a1432148d7d7127d 168 SUPERFAMILY SSF49764 51 167 3.0E-31 T 26-04-2016 IPR008978 HSP20-like chaperone RGE_RS10695 d48852e344b95160a1432148d7d7127d 168 Pfam PF00011 Hsp20/alpha crystallin family 67 166 7.9E-19 T 26-04-2016 IPR002068 Alpha crystallin/Hsp20 domain RGE_RS10695 d48852e344b95160a1432148d7d7127d 168 Gene3D G3DSA:2.60.40.790 44 167 1.4E-30 T 26-04-2016 IPR008978 HSP20-like chaperone RGE_RS15415 b143d397b3225130e0814aa0ec9c3870 187 PANTHER PTHR11071:SF192 27 185 1.1E-60 T 26-04-2016 RGE_RS15415 b143d397b3225130e0814aa0ec9c3870 187 PANTHER PTHR11071 27 185 1.1E-60 T 26-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RGE_RS15415 b143d397b3225130e0814aa0ec9c3870 187 Gene3D G3DSA:2.40.100.10 24 184 7.7E-55 T 26-04-2016 IPR029000 Cyclophilin-like domain RGE_RS15415 b143d397b3225130e0814aa0ec9c3870 187 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 60 77 - T 26-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RGE_RS15415 b143d397b3225130e0814aa0ec9c3870 187 SUPERFAMILY SSF50891 25 185 1.75E-57 T 26-04-2016 IPR029000 Cyclophilin-like domain RGE_RS15415 b143d397b3225130e0814aa0ec9c3870 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 39 54 2.2E-12 T 26-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RGE_RS15415 b143d397b3225130e0814aa0ec9c3870 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 65 77 2.2E-12 T 26-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RGE_RS15415 b143d397b3225130e0814aa0ec9c3870 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 141 156 2.2E-12 T 26-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RGE_RS15415 b143d397b3225130e0814aa0ec9c3870 187 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 26 181 2.0E-48 T 26-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RGE_RS03145 ca875c9a624da9397d2d4dd25946228f 174 PANTHER PTHR23091:SF253 4 165 6.9E-17 T 26-04-2016 RGE_RS03145 ca875c9a624da9397d2d4dd25946228f 174 PANTHER PTHR23091 4 165 6.9E-17 T 26-04-2016 RGE_RS03145 ca875c9a624da9397d2d4dd25946228f 174 SUPERFAMILY SSF55729 1 158 2.06E-28 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS03145 ca875c9a624da9397d2d4dd25946228f 174 Pfam PF00583 Acetyltransferase (GNAT) family 56 143 4.0E-16 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS03145 ca875c9a624da9397d2d4dd25946228f 174 Gene3D G3DSA:3.40.630.30 2 164 1.2E-29 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS14625 3462b2117efb267a5c1a412f73a85f2d 238 PANTHER PTHR21198 2 227 4.3E-78 T 26-04-2016 RGE_RS14625 3462b2117efb267a5c1a412f73a85f2d 238 SUPERFAMILY SSF53681 2 116 3.71E-30 T 26-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS14625 3462b2117efb267a5c1a412f73a85f2d 238 TIGRFAM TIGR00035 asp_race: aspartate racemase 2 231 2.8E-62 T 26-04-2016 IPR004380 Aspartate racemase GO:0006520|GO:0016855 RGE_RS14625 3462b2117efb267a5c1a412f73a85f2d 238 PANTHER PTHR21198:SF7 2 227 4.3E-78 T 26-04-2016 RGE_RS14625 3462b2117efb267a5c1a412f73a85f2d 238 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 192 202 - T 26-04-2016 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS14625 3462b2117efb267a5c1a412f73a85f2d 238 SUPERFAMILY SSF53681 118 228 9.32E-32 T 26-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS14625 3462b2117efb267a5c1a412f73a85f2d 238 Gene3D G3DSA:3.40.50.1860 2 113 2.6E-36 T 26-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS14625 3462b2117efb267a5c1a412f73a85f2d 238 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 223 2.8E-53 T 26-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS14625 3462b2117efb267a5c1a412f73a85f2d 238 Gene3D G3DSA:3.40.50.1860 114 215 6.6E-34 T 26-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS02495 cf7000e58e684e292767008abe5f0236 123 PANTHER PTHR26402 2 113 5.0E-35 T 26-04-2016 RGE_RS02495 cf7000e58e684e292767008abe5f0236 123 SMART SM00448 2 116 3.0E-29 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS02495 cf7000e58e684e292767008abe5f0236 123 SUPERFAMILY SSF52172 2 120 3.27E-32 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS02495 cf7000e58e684e292767008abe5f0236 123 Gene3D G3DSA:3.40.50.2300 2 119 1.6E-33 T 26-04-2016 RGE_RS02495 cf7000e58e684e292767008abe5f0236 123 Pfam PF00072 Response regulator receiver domain 4 110 3.4E-24 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS16015 cde998e2f5d83e2597cc43322eaec328 264 SUPERFAMILY SSF52096 2 263 1.79E-63 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS16015 cde998e2f5d83e2597cc43322eaec328 264 PANTHER PTHR11941 6 261 3.2E-73 T 26-04-2016 RGE_RS16015 cde998e2f5d83e2597cc43322eaec328 264 PANTHER PTHR11941:SF86 6 261 3.2E-73 T 26-04-2016 RGE_RS16015 cde998e2f5d83e2597cc43322eaec328 264 Gene3D G3DSA:3.90.226.10 6 204 9.0E-50 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS16015 cde998e2f5d83e2597cc43322eaec328 264 Gene3D G3DSA:1.10.12.10 207 264 3.8E-8 T 26-04-2016 IPR014748 Crontonase, C-terminal RGE_RS16015 cde998e2f5d83e2597cc43322eaec328 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 262 9.0E-41 T 26-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RGE_RS23305 2f702b6be2b099e1ca689cf3a9dc95de 190 Gene3D G3DSA:3.40.630.30 31 144 8.8E-16 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS23305 2f702b6be2b099e1ca689cf3a9dc95de 190 Pfam PF00583 Acetyltransferase (GNAT) family 76 142 3.1E-8 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS23305 2f702b6be2b099e1ca689cf3a9dc95de 190 SUPERFAMILY SSF55729 50 144 2.66E-14 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS23305 2f702b6be2b099e1ca689cf3a9dc95de 190 SUPERFAMILY SSF55729 10 25 2.66E-14 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06255 b9797ae5667a04bb12d92ad8844e2613 228 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 45 9.4E-6 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS06255 b9797ae5667a04bb12d92ad8844e2613 228 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 53 76 9.4E-6 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS06255 b9797ae5667a04bb12d92ad8844e2613 228 Pfam PF00440 Bacterial regulatory proteins, tetR family 32 78 3.3E-11 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS06255 b9797ae5667a04bb12d92ad8844e2613 228 PANTHER PTHR30055:SF76 15 222 1.1E-22 T 26-04-2016 RGE_RS06255 b9797ae5667a04bb12d92ad8844e2613 228 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 168 215 1.3E-6 T 26-04-2016 RGE_RS06255 b9797ae5667a04bb12d92ad8844e2613 228 PANTHER PTHR30055 15 222 1.1E-22 T 26-04-2016 RGE_RS06255 b9797ae5667a04bb12d92ad8844e2613 228 Gene3D G3DSA:1.10.357.10 13 215 1.1E-42 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS06255 b9797ae5667a04bb12d92ad8844e2613 228 SUPERFAMILY SSF46689 19 102 1.08E-15 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS00895 6ed26d46218f87151642f39a15f0c254 500 Gene3D G3DSA:3.40.190.10 187 286 4.0E-31 T 26-04-2016 RGE_RS00895 6ed26d46218f87151642f39a15f0c254 500 PANTHER PTHR30290 1 498 3.1E-113 T 26-04-2016 RGE_RS00895 6ed26d46218f87151642f39a15f0c254 500 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 406 7.2E-77 T 26-04-2016 IPR000914 Solute-binding protein family 5 domain RGE_RS00895 6ed26d46218f87151642f39a15f0c254 500 PANTHER PTHR30290:SF14 1 498 3.1E-113 T 26-04-2016 RGE_RS00895 6ed26d46218f87151642f39a15f0c254 500 PIRSF PIRSF002741 7 500 1.4E-83 T 26-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RGE_RS00895 6ed26d46218f87151642f39a15f0c254 500 Gene3D G3DSA:3.90.76.10 40 186 1.8E-35 T 26-04-2016 RGE_RS00895 6ed26d46218f87151642f39a15f0c254 500 Gene3D G3DSA:3.10.105.10 287 468 2.9E-43 T 26-04-2016 RGE_RS00895 6ed26d46218f87151642f39a15f0c254 500 SUPERFAMILY SSF53850 25 484 4.4E-113 T 26-04-2016 RGE_RS01510 fd20835afed8398c7fbbf03eb02a6064 226 Gene3D G3DSA:3.40.470.10 10 216 3.9E-48 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS01510 fd20835afed8398c7fbbf03eb02a6064 226 Pfam PF03167 Uracil DNA glycosylase superfamily 59 196 1.2E-12 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS01510 fd20835afed8398c7fbbf03eb02a6064 226 SUPERFAMILY SSF52141 11 211 2.04E-45 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS01510 fd20835afed8398c7fbbf03eb02a6064 226 SMART SM00986 55 179 3.3E-14 T 26-04-2016 IPR005122 Uracil-DNA glycosylase-like RGE_RS01510 fd20835afed8398c7fbbf03eb02a6064 226 PANTHER PTHR11264 51 172 1.0E-37 T 26-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 RGE_RS01510 fd20835afed8398c7fbbf03eb02a6064 226 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 63 72 - T 26-04-2016 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 RGE_RS01510 fd20835afed8398c7fbbf03eb02a6064 226 SMART SM00987 55 179 3.3E-14 T 26-04-2016 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 56 75 1.1E-58 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 204 225 1.1E-58 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 95 114 1.1E-58 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 75 95 1.1E-58 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 183 203 1.1E-58 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 228 253 1.1E-58 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PANTHER PTHR30587:SF0 38 256 6.4E-100 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 231 243 - T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 58 253 4.0E-70 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 Pfam PF00813 FliP family 58 250 2.3E-69 T 26-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 54 63 1.4E-8 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 126 140 1.4E-8 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 244 254 1.4E-8 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 176 188 1.4E-8 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 114 126 1.4E-8 T 26-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RGE_RS09545 90189027c482ae819ce2c877b68ed34b 257 PANTHER PTHR30587 38 256 6.4E-100 T 26-04-2016 RGE_RS23360 7e7aa7772f10f455b9a0a63c74209456 349 SUPERFAMILY SSF51261 203 340 2.46E-46 T 26-04-2016 IPR011055 Duplicated hybrid motif RGE_RS23360 7e7aa7772f10f455b9a0a63c74209456 349 Pfam PF01551 Peptidase family M23 244 338 5.5E-29 T 26-04-2016 IPR016047 Peptidase M23 RGE_RS23360 7e7aa7772f10f455b9a0a63c74209456 349 PANTHER PTHR21666 12 343 1.5E-36 T 26-04-2016 RGE_RS23360 7e7aa7772f10f455b9a0a63c74209456 349 Gene3D G3DSA:2.70.70.10 215 343 1.9E-42 T 26-04-2016 RGE_RS09880 da29369eb5b6f5cb4562efc636d208d4 445 Gene3D G3DSA:3.50.50.60 166 294 5.7E-39 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09880 da29369eb5b6f5cb4562efc636d208d4 445 PANTHER PTHR10632 20 445 2.5E-114 T 26-04-2016 RGE_RS09880 da29369eb5b6f5cb4562efc636d208d4 445 SUPERFAMILY SSF51905 167 294 1.25E-30 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09880 da29369eb5b6f5cb4562efc636d208d4 445 SUPERFAMILY SSF51905 47 151 8.94E-22 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09880 da29369eb5b6f5cb4562efc636d208d4 445 SUPERFAMILY SSF51905 294 375 8.94E-22 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09880 da29369eb5b6f5cb4562efc636d208d4 445 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 47 151 2.8E-7 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09880 da29369eb5b6f5cb4562efc636d208d4 445 Gene3D G3DSA:3.50.50.60 45 164 2.9E-19 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS09880 da29369eb5b6f5cb4562efc636d208d4 445 PANTHER PTHR10632:SF10 20 445 2.5E-114 T 26-04-2016 RGE_RS11740 73882f7ee72d37643713056c7e36dd7b 147 Gene3D G3DSA:3.30.1130.10 17 136 4.8E-45 T 26-04-2016 RGE_RS11740 73882f7ee72d37643713056c7e36dd7b 147 SUPERFAMILY SSF55620 17 127 3.48E-26 T 26-04-2016 RGE_RS11740 73882f7ee72d37643713056c7e36dd7b 147 Pfam PF14489 QueF-like protein 54 132 2.9E-30 T 26-04-2016 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS11740 73882f7ee72d37643713056c7e36dd7b 147 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 147 50.574 T 26-04-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS11740 73882f7ee72d37643713056c7e36dd7b 147 PANTHER PTHR34354 22 143 7.2E-48 T 26-04-2016 RGE_RS11740 73882f7ee72d37643713056c7e36dd7b 147 PANTHER PTHR34354:SF1 22 143 7.2E-48 T 26-04-2016 RGE_RS11740 73882f7ee72d37643713056c7e36dd7b 147 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 21 131 2.9E-52 T 26-04-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS05145 5f15730215214fbca14d5e94cb54d9a6 203 Pfam PF13410 Glutathione S-transferase, C-terminal domain 120 182 5.6E-7 T 26-04-2016 RGE_RS05145 5f15730215214fbca14d5e94cb54d9a6 203 SUPERFAMILY SSF47616 73 202 6.68E-25 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS05145 5f15730215214fbca14d5e94cb54d9a6 203 PANTHER PTHR11260 1 202 4.3E-62 T 26-04-2016 RGE_RS05145 5f15730215214fbca14d5e94cb54d9a6 203 PANTHER PTHR11260:SF44 1 202 4.3E-62 T 26-04-2016 RGE_RS05145 5f15730215214fbca14d5e94cb54d9a6 203 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 77 3.3E-15 T 26-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RGE_RS05145 5f15730215214fbca14d5e94cb54d9a6 203 SUPERFAMILY SSF52833 1 101 9.05E-26 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS05145 5f15730215214fbca14d5e94cb54d9a6 203 Gene3D G3DSA:3.40.30.10 1 90 2.3E-31 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS05145 5f15730215214fbca14d5e94cb54d9a6 203 Gene3D G3DSA:1.20.1050.10 91 194 2.1E-19 T 26-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RGE_RS07550 58e2ded71fd3c22029e65496ee0d3cac 421 PIRSF PIRSF020818 1 421 3.9E-191 T 26-04-2016 IPR010915 Polyhydroxyalkanoate depolymerase RGE_RS07550 58e2ded71fd3c22029e65496ee0d3cac 421 SUPERFAMILY SSF53474 106 408 2.94E-29 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07550 58e2ded71fd3c22029e65496ee0d3cac 421 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 2 410 7.6E-179 T 26-04-2016 IPR010915 Polyhydroxyalkanoate depolymerase RGE_RS07550 58e2ded71fd3c22029e65496ee0d3cac 421 Gene3D G3DSA:3.40.50.1820 106 409 7.3E-5 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07550 58e2ded71fd3c22029e65496ee0d3cac 421 Pfam PF06850 PHB de-polymerase C-terminus 210 411 7.3E-94 T 26-04-2016 IPR009656 PHB de-polymerase, C-terminal RGE_RS01455 0c5042047ab5141da21fd4a901212a6d 233 PANTHER PTHR24220:SF469 6 220 3.7E-81 T 26-04-2016 RGE_RS01455 0c5042047ab5141da21fd4a901212a6d 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS01455 0c5042047ab5141da21fd4a901212a6d 233 SUPERFAMILY SSF52540 4 224 7.79E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01455 0c5042047ab5141da21fd4a901212a6d 233 PANTHER PTHR24220 6 220 3.7E-81 T 26-04-2016 RGE_RS01455 0c5042047ab5141da21fd4a901212a6d 233 Gene3D G3DSA:3.40.50.300 4 223 1.3E-51 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01455 0c5042047ab5141da21fd4a901212a6d 233 SMART SM00382 29 212 1.0E-6 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS01455 0c5042047ab5141da21fd4a901212a6d 233 Pfam PF00005 ABC transporter 20 160 7.7E-24 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS21115 e287a9c568d0420719e7deddfc0140c4 565 Gene3D G3DSA:1.20.1250.20 250 338 1.7E-26 T 26-04-2016 RGE_RS21115 e287a9c568d0420719e7deddfc0140c4 565 Gene3D G3DSA:1.20.1250.20 19 230 3.0E-24 T 26-04-2016 RGE_RS21115 e287a9c568d0420719e7deddfc0140c4 565 Gene3D G3DSA:1.20.1250.20 462 559 1.7E-26 T 26-04-2016 RGE_RS21115 e287a9c568d0420719e7deddfc0140c4 565 PANTHER PTHR23508 464 561 1.1E-230 T 26-04-2016 RGE_RS21115 e287a9c568d0420719e7deddfc0140c4 565 PANTHER PTHR23508 11 340 1.1E-230 T 26-04-2016 RGE_RS21115 e287a9c568d0420719e7deddfc0140c4 565 SUPERFAMILY SSF103473 14 333 2.88E-53 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS21115 e287a9c568d0420719e7deddfc0140c4 565 PANTHER PTHR23508:SF7 464 561 1.1E-230 T 26-04-2016 RGE_RS21115 e287a9c568d0420719e7deddfc0140c4 565 PANTHER PTHR23508:SF7 11 340 1.1E-230 T 26-04-2016 RGE_RS21115 e287a9c568d0420719e7deddfc0140c4 565 SUPERFAMILY SSF103473 461 560 2.35E-11 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS21115 e287a9c568d0420719e7deddfc0140c4 565 ProSitePatterns PS00217 Sugar transport proteins signature 2. 131 156 - T 26-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RGE_RS21115 e287a9c568d0420719e7deddfc0140c4 565 Pfam PF00083 Sugar (and other) transporter 23 236 9.7E-29 T 26-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RGE_RS21115 e287a9c568d0420719e7deddfc0140c4 565 Pfam PF00083 Sugar (and other) transporter 463 562 2.5E-5 T 26-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RGE_RS19435 fc0b1d10b918d815900bc25633f6a9f7 270 PANTHER PTHR24220:SF589 6 253 2.6E-77 T 26-04-2016 RGE_RS19435 fc0b1d10b918d815900bc25633f6a9f7 270 Gene3D G3DSA:3.40.50.300 5 226 1.3E-59 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19435 fc0b1d10b918d815900bc25633f6a9f7 270 PANTHER PTHR24220 6 253 2.6E-77 T 26-04-2016 RGE_RS19435 fc0b1d10b918d815900bc25633f6a9f7 270 SUPERFAMILY SSF52540 5 245 9.04E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19435 fc0b1d10b918d815900bc25633f6a9f7 270 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS19435 fc0b1d10b918d815900bc25633f6a9f7 270 SMART SM00382 35 237 1.8E-11 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS19435 fc0b1d10b918d815900bc25633f6a9f7 270 Pfam PF00005 ABC transporter 27 172 4.5E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS22665 269f50954aaa09af5e50bd6fa17995ab 568 Pfam PF15864 Protein glycosylation ligase 152 177 5.8E-7 T 26-04-2016 IPR031726 Protein glycosylation ligase domain RGE_RS22665 269f50954aaa09af5e50bd6fa17995ab 568 Pfam PF04932 O-Antigen ligase 191 335 3.7E-12 T 26-04-2016 IPR007016 O-antigen ligase-related RGE_RS22665 269f50954aaa09af5e50bd6fa17995ab 568 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 363 525 8.4E-18 T 26-04-2016 IPR021797 Virulence factor membrane-bound polymerase, C-terminal RGE_RS21930 96e8c1f34abfa609366983a1059aad98 279 SUPERFAMILY SSF47240 7 271 3.29E-45 T 26-04-2016 IPR009078 Ferritin-like superfamily RGE_RS21930 96e8c1f34abfa609366983a1059aad98 279 Gene3D G3DSA:1.10.620.20 12 184 2.2E-23 T 26-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 RGE_RS20030 4e39ca343126c698b594523a315b561a 322 Pfam PF10502 Signal peptidase, peptidase S26 271 309 1.2E-5 T 26-04-2016 IPR019533 Peptidase S26 RGE_RS20030 4e39ca343126c698b594523a315b561a 322 PANTHER PTHR12383 26 227 1.1E-81 T 26-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RGE_RS20030 4e39ca343126c698b594523a315b561a 322 PANTHER PTHR12383 257 318 1.1E-81 T 26-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RGE_RS20030 4e39ca343126c698b594523a315b561a 322 SUPERFAMILY SSF51306 115 318 7.32E-70 T 26-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RGE_RS20030 4e39ca343126c698b594523a315b561a 322 PANTHER PTHR12383:SF27 26 227 1.1E-81 T 26-04-2016 RGE_RS20030 4e39ca343126c698b594523a315b561a 322 PANTHER PTHR12383:SF27 257 318 1.1E-81 T 26-04-2016 RGE_RS20030 4e39ca343126c698b594523a315b561a 322 ProSitePatterns PS00501 Signal peptidases I serine active site. 126 133 - T 26-04-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: REACT_15380 RGE_RS20030 4e39ca343126c698b594523a315b561a 322 ProSitePatterns PS00761 Signal peptidases I signature 3. 277 290 - T 26-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RGE_RS20030 4e39ca343126c698b594523a315b561a 322 Pfam PF00717 Peptidase S24-like 123 205 1.7E-21 T 26-04-2016 IPR019759 Peptidase S24/S26A/S26B RGE_RS20030 4e39ca343126c698b594523a315b561a 322 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 272 291 3.1E-24 T 26-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RGE_RS20030 4e39ca343126c698b594523a315b561a 322 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 181 193 3.1E-24 T 26-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RGE_RS20030 4e39ca343126c698b594523a315b561a 322 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 117 133 3.1E-24 T 26-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RGE_RS20030 4e39ca343126c698b594523a315b561a 322 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 102 311 1.3E-50 T 26-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RGE_RS20030 4e39ca343126c698b594523a315b561a 322 Gene3D G3DSA:2.10.109.10 113 191 3.9E-56 T 26-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RGE_RS20030 4e39ca343126c698b594523a315b561a 322 Gene3D G3DSA:2.10.109.10 272 318 3.9E-56 T 26-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RGE_RS20030 4e39ca343126c698b594523a315b561a 322 ProSitePatterns PS00760 Signal peptidases I lysine active site. 183 195 - T 26-04-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 RGE_RS11610 54b162e3258ce720c19b17cdbaaca941 278 Gene3D G3DSA:3.90.230.10 3 261 2.0E-93 T 26-04-2016 IPR000994 Peptidase M24, structural domain RGE_RS11610 54b162e3258ce720c19b17cdbaaca941 278 PANTHER PTHR10804:SF75 1 259 7.3E-138 T 26-04-2016 RGE_RS11610 54b162e3258ce720c19b17cdbaaca941 278 Hamap MF_01974 Methionine aminopeptidase [map]. 3 261 41.277 T 26-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RGE_RS11610 54b162e3258ce720c19b17cdbaaca941 278 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 172 190 - T 26-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RGE_RS11610 54b162e3258ce720c19b17cdbaaca941 278 SUPERFAMILY SSF55920 3 259 1.31E-86 T 26-04-2016 IPR000994 Peptidase M24, structural domain RGE_RS11610 54b162e3258ce720c19b17cdbaaca941 278 Pfam PF00557 Metallopeptidase family M24 13 252 1.7E-53 T 26-04-2016 IPR000994 Peptidase M24, structural domain RGE_RS11610 54b162e3258ce720c19b17cdbaaca941 278 PANTHER PTHR10804 1 259 7.3E-138 T 26-04-2016 RGE_RS11610 54b162e3258ce720c19b17cdbaaca941 278 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 260 2.2E-92 T 26-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RGE_RS11610 54b162e3258ce720c19b17cdbaaca941 278 PRINTS PR00599 Methionine aminopeptidase-1 signature 166 178 2.3E-22 T 26-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RGE_RS11610 54b162e3258ce720c19b17cdbaaca941 278 PRINTS PR00599 Methionine aminopeptidase-1 signature 197 209 2.3E-22 T 26-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RGE_RS11610 54b162e3258ce720c19b17cdbaaca941 278 PRINTS PR00599 Methionine aminopeptidase-1 signature 74 87 2.3E-22 T 26-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RGE_RS11610 54b162e3258ce720c19b17cdbaaca941 278 PRINTS PR00599 Methionine aminopeptidase-1 signature 96 112 2.3E-22 T 26-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RGE_RS13305 512ab04656bd7a487e8cf63e13403aaf 236 PIRSF PIRSF005650 1 236 2.7E-91 T 26-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RGE_RS13305 512ab04656bd7a487e8cf63e13403aaf 236 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 4 235 3.7E-100 T 26-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RGE_RS13305 512ab04656bd7a487e8cf63e13403aaf 236 Hamap MF_01220_B Uridylate kinase [pyrH]. 2 235 43.993 T 26-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RGE_RS13305 512ab04656bd7a487e8cf63e13403aaf 236 Pfam PF00696 Amino acid kinase family 5 214 6.9E-31 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS13305 512ab04656bd7a487e8cf63e13403aaf 236 Gene3D G3DSA:3.40.1160.10 2 235 3.8E-85 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS13305 512ab04656bd7a487e8cf63e13403aaf 236 SUPERFAMILY SSF53633 2 235 1.17E-71 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS13305 512ab04656bd7a487e8cf63e13403aaf 236 PANTHER PTHR21499 2 234 5.7E-108 T 26-04-2016 RGE_RS13305 512ab04656bd7a487e8cf63e13403aaf 236 PANTHER PTHR21499:SF23 2 234 5.7E-108 T 26-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RGE_RS05230 afced917362e29319799e5c331173959 147 SUPERFAMILY SSF54427 21 144 7.31E-5 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS05230 afced917362e29319799e5c331173959 147 SMART SM00978 16 145 5.6E-18 T 26-04-2016 IPR007379 Tim44-like domain RGE_RS04740 9c412b8a43a8515cff5152911a26e58e 178 Gene3D G3DSA:3.30.1330.60 58 175 4.8E-33 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS04740 9c412b8a43a8515cff5152911a26e58e 178 PANTHER PTHR30128 59 176 1.2E-33 T 26-04-2016 RGE_RS04740 9c412b8a43a8515cff5152911a26e58e 178 SUPERFAMILY SSF103088 62 175 9.68E-33 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS04740 9c412b8a43a8515cff5152911a26e58e 178 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 138 157 6.8E-6 T 26-04-2016 RGE_RS04740 9c412b8a43a8515cff5152911a26e58e 178 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 120 137 6.8E-6 T 26-04-2016 RGE_RS04740 9c412b8a43a8515cff5152911a26e58e 178 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 158 178 6.8E-6 T 26-04-2016 RGE_RS04740 9c412b8a43a8515cff5152911a26e58e 178 Pfam PF00691 OmpA family 75 169 7.4E-18 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS04740 9c412b8a43a8515cff5152911a26e58e 178 PRINTS PR01021 OMPA domain signature 120 136 1.3E-11 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS04740 9c412b8a43a8515cff5152911a26e58e 178 PRINTS PR01021 OMPA domain signature 75 97 1.3E-11 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS04740 9c412b8a43a8515cff5152911a26e58e 178 PRINTS PR01021 OMPA domain signature 105 120 1.3E-11 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS15130 f43014d594e3fa09f13ce53f654c0cba 355 Gene3D G3DSA:3.40.50.1820 5 290 5.8E-43 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS15130 f43014d594e3fa09f13ce53f654c0cba 355 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 3.4E-6 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS15130 f43014d594e3fa09f13ce53f654c0cba 355 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 3.4E-6 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS15130 f43014d594e3fa09f13ce53f654c0cba 355 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 3.4E-6 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS15130 f43014d594e3fa09f13ce53f654c0cba 355 SUPERFAMILY SSF53474 5 290 3.01E-41 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS15130 f43014d594e3fa09f13ce53f654c0cba 355 PRINTS PR00412 Epoxide hydrolase signature 266 288 1.5E-6 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS15130 f43014d594e3fa09f13ce53f654c0cba 355 PRINTS PR00412 Epoxide hydrolase signature 98 111 1.5E-6 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS15130 f43014d594e3fa09f13ce53f654c0cba 355 PRINTS PR00412 Epoxide hydrolase signature 54 69 1.5E-6 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS15130 f43014d594e3fa09f13ce53f654c0cba 355 PRINTS PR00412 Epoxide hydrolase signature 112 125 1.5E-6 T 26-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RGE_RS15130 f43014d594e3fa09f13ce53f654c0cba 355 PANTHER PTHR10992 184 291 1.1E-32 T 26-04-2016 RGE_RS15130 f43014d594e3fa09f13ce53f654c0cba 355 PANTHER PTHR10992 6 165 1.1E-32 T 26-04-2016 RGE_RS15130 f43014d594e3fa09f13ce53f654c0cba 355 Pfam PF00561 alpha/beta hydrolase fold 30 146 5.6E-19 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS14000 f893c7b64ae6e09f338977edd81c9183 51 ProSitePatterns PS00969 Antenna complexes beta subunits signature. 17 48 - T 26-04-2016 IPR023623 Antenna complex, beta subunit, conserved site RGE_RS14000 f893c7b64ae6e09f338977edd81c9183 51 PRINTS PR00674 Light harvesting protein B chain signature 32 49 4.8E-12 T 26-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS14000 f893c7b64ae6e09f338977edd81c9183 51 PRINTS PR00674 Light harvesting protein B chain signature 12 32 4.8E-12 T 26-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS14000 f893c7b64ae6e09f338977edd81c9183 51 Pfam PF00556 Antenna complex alpha/beta subunit 16 50 2.8E-11 T 26-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS14000 f893c7b64ae6e09f338977edd81c9183 51 PIRSF PIRSF002900 3 51 4.4E-17 T 26-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS14000 f893c7b64ae6e09f338977edd81c9183 51 Gene3D G3DSA:1.20.5.250 11 51 3.1E-20 T 26-04-2016 RGE_RS14000 f893c7b64ae6e09f338977edd81c9183 51 SUPERFAMILY SSF56918 4 50 9.94E-16 T 26-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RGE_RS14215 22df3dfac5da0ba74a04eeaa1db59d30 386 SUPERFAMILY SSF53383 9 385 1.18E-104 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS14215 22df3dfac5da0ba74a04eeaa1db59d30 386 Pfam PF00155 Aminotransferase class I and II 34 383 1.6E-59 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS14215 22df3dfac5da0ba74a04eeaa1db59d30 386 Gene3D G3DSA:3.40.640.10 47 273 5.3E-79 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS14215 22df3dfac5da0ba74a04eeaa1db59d30 386 PANTHER PTHR11751 12 386 4.9E-134 T 26-04-2016 RGE_RS14215 22df3dfac5da0ba74a04eeaa1db59d30 386 Gene3D G3DSA:3.90.1150.10 274 385 1.2E-17 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS14215 22df3dfac5da0ba74a04eeaa1db59d30 386 PANTHER PTHR11751:SF301 12 386 4.9E-134 T 26-04-2016 RGE_RS00525 c023420610f64281e4334ecd03b0ba84 140 PANTHER PTHR31964 1 140 2.0E-17 T 26-04-2016 RGE_RS00525 c023420610f64281e4334ecd03b0ba84 140 SUPERFAMILY SSF52402 1 140 7.37E-28 T 26-04-2016 RGE_RS00525 c023420610f64281e4334ecd03b0ba84 140 PRINTS PR01438 Universal stress protein signature 118 140 1.8E-8 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS00525 c023420610f64281e4334ecd03b0ba84 140 PRINTS PR01438 Universal stress protein signature 100 112 1.8E-8 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS00525 c023420610f64281e4334ecd03b0ba84 140 Pfam PF00582 Universal stress protein family 2 140 6.9E-20 T 26-04-2016 IPR006016 UspA GO:0006950 RGE_RS00525 c023420610f64281e4334ecd03b0ba84 140 Gene3D G3DSA:3.40.50.620 2 140 8.9E-29 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS00970 bec4896d44fb7e3e7dcf630af9ed2a49 364 SUPERFAMILY SSF55103 178 363 4.91E-18 T 26-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RGE_RS00970 bec4896d44fb7e3e7dcf630af9ed2a49 364 PANTHER PTHR11748:SF1 16 360 4.5E-70 T 26-04-2016 RGE_RS00970 bec4896d44fb7e3e7dcf630af9ed2a49 364 SUPERFAMILY SSF56176 13 175 1.17E-28 T 26-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RGE_RS00970 bec4896d44fb7e3e7dcf630af9ed2a49 364 PANTHER PTHR11748 16 360 4.5E-70 T 26-04-2016 RGE_RS00970 bec4896d44fb7e3e7dcf630af9ed2a49 364 Gene3D G3DSA:3.30.465.10 54 175 2.2E-20 T 26-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RGE_RS00970 bec4896d44fb7e3e7dcf630af9ed2a49 364 Pfam PF01565 FAD binding domain 12 137 9.8E-19 T 26-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RGE_RS00970 bec4896d44fb7e3e7dcf630af9ed2a49 364 Gene3D G3DSA:1.10.45.10 340 360 4.4E-5 T 26-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RGE_RS08820 359fa9e0dd96109170aba51e3e4f7e42 234 Gene3D G3DSA:3.30.1330.60 81 210 1.6E-17 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS08820 359fa9e0dd96109170aba51e3e4f7e42 234 SUPERFAMILY SSF103088 84 210 8.89E-17 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS08820 359fa9e0dd96109170aba51e3e4f7e42 234 Pfam PF00691 OmpA family 96 166 3.6E-10 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS04480 dcc10b2890db4fe1635c3c5eca742ed4 155 Pfam PF05433 Glycine zipper 2TM domain 55 95 1.0E-5 T 26-04-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 RGE_RS05585 4e548078c50ecc3d9b47ca07b1da3d82 281 Gene3D G3DSA:3.40.50.1820 3 279 6.6E-77 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS05585 4e548078c50ecc3d9b47ca07b1da3d82 281 SUPERFAMILY SSF53474 3 279 1.59E-86 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS05585 4e548078c50ecc3d9b47ca07b1da3d82 281 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 4 279 6.2E-122 T 26-04-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 RGE_RS05585 4e548078c50ecc3d9b47ca07b1da3d82 281 PANTHER PTHR10061 1 281 3.1E-161 T 26-04-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 RGE_RS05585 4e548078c50ecc3d9b47ca07b1da3d82 281 Pfam PF00756 Putative esterase 21 273 1.1E-58 T 26-04-2016 IPR000801 Putative esterase RGE_RS00935 d078d07a66eaaa3a82e95a88ec025d8a 102 Pfam PF00816 H-NS histone family 8 94 3.9E-24 T 26-04-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 RGE_RS00935 d078d07a66eaaa3a82e95a88ec025d8a 102 SUPERFAMILY SSF81273 60 100 3.77E-9 T 26-04-2016 RGE_RS00935 d078d07a66eaaa3a82e95a88ec025d8a 102 SMART SM00528 57 100 3.8E-10 T 26-04-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RGE_RS00935 d078d07a66eaaa3a82e95a88ec025d8a 102 Gene3D G3DSA:4.10.430.10 65 100 2.6E-11 T 26-04-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RGE_RS17020 b1416b81d3425baaf9fd1260134a33bf 242 PIRSF PIRSF029033 1 242 5.6E-48 T 26-04-2016 IPR016907 Uncharacterised conserved protein UCP029033, periplasmic protein RGE_RS17020 b1416b81d3425baaf9fd1260134a33bf 242 Pfam PF04402 Protein of unknown function (DUF541) 41 208 5.5E-18 T 26-04-2016 IPR007497 Protein of unknown function DUF541 RGE_RS18845 1efb8b0c4aa4f37869ca5ddf8f9ca416 138 Pfam PF04940 Sensors of blue-light using FAD 13 100 3.2E-20 T 26-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RGE_RS18845 1efb8b0c4aa4f37869ca5ddf8f9ca416 138 SMART SM01034 12 104 2.8E-20 T 26-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RGE_RS18845 1efb8b0c4aa4f37869ca5ddf8f9ca416 138 SUPERFAMILY SSF54975 13 111 4.58E-25 T 26-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RGE_RS12545 f9322cd2e2c0078376cafcb03254da6a 449 PANTHER PTHR35566 1 447 1.9E-91 T 26-04-2016 RGE_RS12545 f9322cd2e2c0078376cafcb03254da6a 449 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 447 3.3E-131 T 26-04-2016 IPR010263 Type VI secretion protein, VC_A0114 RGE_RS12545 f9322cd2e2c0078376cafcb03254da6a 449 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 448 3.7E-133 T 26-04-2016 IPR010263 Type VI secretion protein, VC_A0114 RGE_RS16990 748407d8d9ff3383ab5d81cbd47a332f 173 SUPERFAMILY SSF54534 4 143 7.86E-21 T 26-04-2016 RGE_RS16990 748407d8d9ff3383ab5d81cbd47a332f 173 Gene3D G3DSA:3.10.50.40 125 144 8.6E-7 T 26-04-2016 RGE_RS16990 748407d8d9ff3383ab5d81cbd47a332f 173 Gene3D G3DSA:3.10.50.40 27 67 8.6E-7 T 26-04-2016 RGE_RS10000 8677ad26d32a3d47bbe8ce6aff95aa4a 384 Gene3D G3DSA:1.10.10.10 318 376 2.8E-13 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10000 8677ad26d32a3d47bbe8ce6aff95aa4a 384 SUPERFAMILY SSF46894 309 378 1.87E-13 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS10000 8677ad26d32a3d47bbe8ce6aff95aa4a 384 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 336 352 8.93E-6 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS10000 8677ad26d32a3d47bbe8ce6aff95aa4a 384 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 322 336 8.93E-6 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS10000 8677ad26d32a3d47bbe8ce6aff95aa4a 384 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 352 364 8.93E-6 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS10000 8677ad26d32a3d47bbe8ce6aff95aa4a 384 Pfam PF00196 Bacterial regulatory proteins, luxR family 322 375 7.3E-10 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS10000 8677ad26d32a3d47bbe8ce6aff95aa4a 384 SMART SM00421 319 376 1.2E-8 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS21660 a1fcace914175a1bb9938f016f9b9f0c 427 SUPERFAMILY SSF109604 166 325 1.48E-24 T 26-04-2016 RGE_RS21660 a1fcace914175a1bb9938f016f9b9f0c 427 Gene3D G3DSA:1.10.3210.10 162 317 3.7E-10 T 26-04-2016 IPR006674 HD domain RGE_RS21660 a1fcace914175a1bb9938f016f9b9f0c 427 SMART SM00471 160 295 5.3E-4 T 26-04-2016 IPR003607 HD/PDEase domain RGE_RS21660 a1fcace914175a1bb9938f016f9b9f0c 427 Pfam PF13487 HD domain 217 276 2.1E-9 T 26-04-2016 RGE_RS21660 a1fcace914175a1bb9938f016f9b9f0c 427 Pfam PF11871 Domain of unknown function (DUF3391) 3 127 4.4E-26 T 26-04-2016 IPR021812 Protein of unknown function DUF3391 RGE_RS00175 dc93ef83e45546dff6d0bd80efe6690a 295 Gene3D G3DSA:3.40.190.10 31 118 2.4E-30 T 26-04-2016 RGE_RS00175 dc93ef83e45546dff6d0bd80efe6690a 295 Gene3D G3DSA:3.40.190.10 227 268 2.4E-30 T 26-04-2016 RGE_RS00175 dc93ef83e45546dff6d0bd80efe6690a 295 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 264 2.2E-46 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS00175 dc93ef83e45546dff6d0bd80efe6690a 295 PANTHER PTHR30085 8 291 1.8E-106 T 26-04-2016 RGE_RS00175 dc93ef83e45546dff6d0bd80efe6690a 295 Gene3D G3DSA:3.40.190.10 119 226 2.0E-25 T 26-04-2016 RGE_RS00175 dc93ef83e45546dff6d0bd80efe6690a 295 SUPERFAMILY SSF53850 8 267 2.76E-62 T 26-04-2016 RGE_RS00175 dc93ef83e45546dff6d0bd80efe6690a 295 PANTHER PTHR30085:SF2 8 291 1.8E-106 T 26-04-2016 RGE_RS00175 dc93ef83e45546dff6d0bd80efe6690a 295 SMART SM00062 34 266 1.9E-59 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS04525 ab423a47df88e7d15542ab89fa536f29 280 PANTHER PTHR24322:SF554 171 202 1.3E-75 T 26-04-2016 RGE_RS04525 ab423a47df88e7d15542ab89fa536f29 280 PANTHER PTHR24322:SF554 14 153 1.3E-75 T 26-04-2016 RGE_RS04525 ab423a47df88e7d15542ab89fa536f29 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.2E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04525 ab423a47df88e7d15542ab89fa536f29 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 1.2E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04525 ab423a47df88e7d15542ab89fa536f29 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 192 209 1.2E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04525 ab423a47df88e7d15542ab89fa536f29 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 190 1.2E-12 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04525 ab423a47df88e7d15542ab89fa536f29 280 Gene3D G3DSA:3.40.50.720 2 248 1.7E-54 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04525 ab423a47df88e7d15542ab89fa536f29 280 SUPERFAMILY SSF51735 5 250 3.77E-53 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS04525 ab423a47df88e7d15542ab89fa536f29 280 PANTHER PTHR24322 171 202 1.3E-75 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04525 ab423a47df88e7d15542ab89fa536f29 280 PANTHER PTHR24322 14 153 1.3E-75 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04525 ab423a47df88e7d15542ab89fa536f29 280 Pfam PF00106 short chain dehydrogenase 11 202 2.4E-33 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS05600 452e74818bf00e76cefc8ce0a8746db7 473 PANTHER PTHR32328:SF0 1 471 4.7E-199 T 26-04-2016 RGE_RS05600 452e74818bf00e76cefc8ce0a8746db7 473 Pfam PF03841 L-seryl-tRNA selenium transferase 81 450 9.7E-162 T 26-04-2016 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 RGE_RS05600 452e74818bf00e76cefc8ce0a8746db7 473 Gene3D G3DSA:3.40.640.10 132 315 7.3E-32 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS05600 452e74818bf00e76cefc8ce0a8746db7 473 Pfam PF12390 Selenocysteine synthase N terminal 7 44 4.5E-7 T 26-04-2016 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 RGE_RS05600 452e74818bf00e76cefc8ce0a8746db7 473 SUPERFAMILY SSF53383 74 392 3.55E-44 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS05600 452e74818bf00e76cefc8ce0a8746db7 473 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 6 462 2.7E-178 T 26-04-2016 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 RGE_RS05600 452e74818bf00e76cefc8ce0a8746db7 473 PANTHER PTHR32328 1 471 4.7E-199 T 26-04-2016 RGE_RS05600 452e74818bf00e76cefc8ce0a8746db7 473 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 468 241.977 T 26-04-2016 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 RGE_RS05600 452e74818bf00e76cefc8ce0a8746db7 473 Gene3D G3DSA:3.30.390.10 12 110 4.5E-4 T 26-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RGE_RS22725 16ba62f641e9237455ce52554ea13215 192 Pfam PF11136 Protein of unknown function (DUF2889) 14 137 4.5E-41 T 26-04-2016 IPR021312 Protein of unknown function DUF2889 RGE_RS15480 cbd515857c9e55d3dead951dc6744bf0 250 Gene3D G3DSA:1.10.10.10 142 245 3.2E-28 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS15480 cbd515857c9e55d3dead951dc6744bf0 250 PANTHER PTHR26402 10 246 1.1E-82 T 26-04-2016 RGE_RS15480 cbd515857c9e55d3dead951dc6744bf0 250 SMART SM00448 10 120 9.0E-40 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS15480 cbd515857c9e55d3dead951dc6744bf0 250 Pfam PF00486 Transcriptional regulatory protein, C terminal 166 242 4.1E-20 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS15480 cbd515857c9e55d3dead951dc6744bf0 250 Gene3D G3DSA:3.40.50.2300 10 132 7.3E-40 T 26-04-2016 RGE_RS15480 cbd515857c9e55d3dead951dc6744bf0 250 SMART SM00862 166 242 9.3E-21 T 26-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RGE_RS15480 cbd515857c9e55d3dead951dc6744bf0 250 SUPERFAMILY SSF46894 147 243 1.22E-23 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS15480 cbd515857c9e55d3dead951dc6744bf0 250 SUPERFAMILY SSF52172 10 133 1.12E-39 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS15480 cbd515857c9e55d3dead951dc6744bf0 250 PANTHER PTHR26402:SF292 10 246 1.1E-82 T 26-04-2016 RGE_RS15480 cbd515857c9e55d3dead951dc6744bf0 250 Pfam PF00072 Response regulator receiver domain 12 121 1.5E-28 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS07665 676eb4890af81225e67c9a5a1e4912c4 199 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 121 142 - T 26-04-2016 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 RGE_RS07665 676eb4890af81225e67c9a5a1e4912c4 199 SUPERFAMILY SSF143243 10 182 3.92E-58 T 26-04-2016 RGE_RS07665 676eb4890af81225e67c9a5a1e4912c4 199 PANTHER PTHR10884 1 182 1.2E-68 T 26-04-2016 RGE_RS07665 676eb4890af81225e67c9a5a1e4912c4 199 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 8 168 35.005 T 26-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 RGE_RS07665 676eb4890af81225e67c9a5a1e4912c4 199 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 87 148 8.0E-23 T 26-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RGE_RS07665 676eb4890af81225e67c9a5a1e4912c4 199 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 33 161 7.7E-45 T 26-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RGE_RS07665 676eb4890af81225e67c9a5a1e4912c4 199 PANTHER PTHR10884:SF6 1 182 1.2E-68 T 26-04-2016 RGE_RS07665 676eb4890af81225e67c9a5a1e4912c4 199 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 32 159 5.0E-42 T 26-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PANTHER PTHR30222 1 370 4.6E-127 T 26-04-2016 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 Gene3D G3DSA:3.40.190.10 153 320 3.0E-59 T 26-04-2016 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PANTHER PTHR30222:SF11 1 370 4.6E-127 T 26-04-2016 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 Gene3D G3DSA:3.40.190.10 40 152 9.4E-11 T 26-04-2016 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 SUPERFAMILY SSF53850 31 370 9.57E-92 T 26-04-2016 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 Pfam PF13416 Bacterial extracellular solute-binding protein 47 335 1.6E-27 T 26-04-2016 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 183 202 3.1E-54 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 79 93 3.1E-54 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 220 239 3.1E-54 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 36 52 3.1E-54 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 270 289 3.1E-54 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 160 174 3.1E-54 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 95 108 3.1E-54 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 52 73 3.1E-54 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 315 341 3.1E-54 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 128 144 3.1E-54 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS00155 bf1d290b5c54c029c0f63be35eaabbdc 372 PIRSF PIRSF019574 1 371 2.2E-131 T 26-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RGE_RS14920 4e2041661b3ef6d4a6af7a8ab71458fa 331 PANTHER PTHR30273 2 325 1.1E-47 T 26-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RGE_RS14920 4e2041661b3ef6d4a6af7a8ab71458fa 331 PIRSF PIRSF018266 2 325 4.3E-74 T 26-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RGE_RS14920 4e2041661b3ef6d4a6af7a8ab71458fa 331 Pfam PF16220 Domain of unknown function (DUF4880) 9 49 5.4E-10 T 26-04-2016 IPR032623 FecR, N-terminal RGE_RS14920 4e2041661b3ef6d4a6af7a8ab71458fa 331 Pfam PF04773 FecR protein 111 211 1.5E-16 T 26-04-2016 IPR006860 FecR protein RGE_RS14920 4e2041661b3ef6d4a6af7a8ab71458fa 331 PANTHER PTHR30273:SF2 2 325 1.1E-47 T 26-04-2016 RGE_RS13380 ab0791b344beaea7e6577d5bf43c9605 80 PANTHER PTHR34772 2 77 6.0E-35 T 26-04-2016 RGE_RS13380 ab0791b344beaea7e6577d5bf43c9605 80 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 4 65 27.028 T 26-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RGE_RS13380 ab0791b344beaea7e6577d5bf43c9605 80 PANTHER PTHR34772:SF1 2 77 6.0E-35 T 26-04-2016 RGE_RS13380 ab0791b344beaea7e6577d5bf43c9605 80 Gene3D G3DSA:2.30.30.100 3 71 5.9E-36 T 26-04-2016 RGE_RS13380 ab0791b344beaea7e6577d5bf43c9605 80 SUPERFAMILY SSF50182 8 70 5.67E-24 T 26-04-2016 IPR010920 LSM domain RGE_RS13380 ab0791b344beaea7e6577d5bf43c9605 80 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 8 65 2.5E-28 T 26-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 PIRSF PIRSF002888 2 326 2.6E-92 T 26-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 SUPERFAMILY SSF101801 249 323 9.55E-13 T 26-04-2016 IPR001543 Surface presentation of antigen (SpoA) RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 PANTHER PTHR30034 3 320 1.1E-123 T 26-04-2016 RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 252 320 3.1E-17 T 26-04-2016 IPR001543 Surface presentation of antigen (SpoA) RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 Pfam PF02154 Flagellar motor switch protein FliM 38 230 1.5E-67 T 26-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 319 2.4E-97 T 26-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 SUPERFAMILY SSF103039 5 14 2.48E-19 T 26-04-2016 IPR028976 CheC-like domain RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 SUPERFAMILY SSF103039 55 230 2.48E-19 T 26-04-2016 IPR028976 CheC-like domain RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 89 105 1.4E-24 T 26-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 1.4E-24 T 26-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 1.4E-24 T 26-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 114 133 1.4E-24 T 26-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 PANTHER PTHR30034:SF0 3 320 1.1E-123 T 26-04-2016 RGE_RS08235 2cfbc5f8d29f98c7b65f123d0a1feb67 334 Gene3D G3DSA:2.30.330.10 249 324 3.2E-9 T 26-04-2016 RGE_RS01580 1ede5190f3cce3a8bc8b57f795e294fa 146 Gene3D G3DSA:3.40.50.1010 11 131 4.9E-4 T 26-04-2016 IPR029060 PIN domain-like RGE_RS01580 1ede5190f3cce3a8bc8b57f795e294fa 146 TIGRFAM TIGR00305 TIGR00305: putative toxin-antitoxin system toxin component, PIN family 11 125 3.2E-9 T 26-04-2016 IPR002850 PIN family, putative toxin-antitoxin system toxin component RGE_RS01580 1ede5190f3cce3a8bc8b57f795e294fa 146 Pfam PF13470 PIN domain 11 121 7.3E-22 T 26-04-2016 IPR002716 PIN domain RGE_RS01580 1ede5190f3cce3a8bc8b57f795e294fa 146 SUPERFAMILY SSF88723 11 127 3.36E-14 T 26-04-2016 IPR029060 PIN domain-like RGE_RS01580 1ede5190f3cce3a8bc8b57f795e294fa 146 PANTHER PTHR34610 5 127 1.8E-16 T 26-04-2016 RGE_RS16345 22b88936df6ab9de371ff78137595655 358 Hamap MF_01840 Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase [acsF]. 7 353 46.783 T 26-04-2016 IPR008434 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase GO:0015979|GO:0015995|GO:0046872|GO:0048529 KEGG: 00860+1.14.13.81 RGE_RS16345 22b88936df6ab9de371ff78137595655 358 SUPERFAMILY SSF47240 80 224 9.17E-20 T 26-04-2016 IPR009078 Ferritin-like superfamily RGE_RS16345 22b88936df6ab9de371ff78137595655 358 PANTHER PTHR31053 2 358 3.2E-135 T 26-04-2016 RGE_RS16345 22b88936df6ab9de371ff78137595655 358 PANTHER PTHR31053:SF1 2 358 3.2E-135 T 26-04-2016 RGE_RS16345 22b88936df6ab9de371ff78137595655 358 Gene3D G3DSA:1.20.1260.10 90 143 1.6E-5 T 26-04-2016 IPR012347 Ferritin-related RGE_RS16345 22b88936df6ab9de371ff78137595655 358 Pfam PF02915 Rubrerythrin 90 219 2.7E-36 T 26-04-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 RGE_RS16345 22b88936df6ab9de371ff78137595655 358 TIGRFAM TIGR02029 AcsF: magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase 12 344 9.5E-145 T 26-04-2016 IPR008434 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase GO:0015979|GO:0015995|GO:0046872|GO:0048529 KEGG: 00860+1.14.13.81 RGE_RS09390 53da468ea75089e541b97642dfb35272 723 PANTHER PTHR32552 2 723 1.7E-88 T 26-04-2016 RGE_RS09390 53da468ea75089e541b97642dfb35272 723 Pfam PF00593 TonB dependent receptor 484 720 1.5E-19 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS09390 53da468ea75089e541b97642dfb35272 723 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 50 723 1.8E-75 T 26-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 RGE_RS09390 53da468ea75089e541b97642dfb35272 723 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 149 6.9E-24 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS09390 53da468ea75089e541b97642dfb35272 723 Gene3D G3DSA:2.170.130.10 14 158 1.8E-34 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS09390 53da468ea75089e541b97642dfb35272 723 PANTHER PTHR32552:SF10 2 723 1.7E-88 T 26-04-2016 RGE_RS09390 53da468ea75089e541b97642dfb35272 723 Gene3D G3DSA:2.40.170.20 168 723 3.5E-102 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS09390 53da468ea75089e541b97642dfb35272 723 SUPERFAMILY SSF56935 8 723 9.95E-117 T 26-04-2016 RGE_RS01825 f7ee03880247b5cd9eac0b413b59268c 190 Pfam PF01694 Rhomboid family 32 171 2.2E-6 T 26-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RGE_RS01825 f7ee03880247b5cd9eac0b413b59268c 190 SUPERFAMILY SSF144091 13 171 1.31E-14 T 26-04-2016 RGE_RS01825 f7ee03880247b5cd9eac0b413b59268c 190 TIGRFAM TIGR03902 rhom_GG_sort: rhombosortase 23 169 5.2E-33 T 26-04-2016 IPR023826 Rhomboid-like serine protease, proteobacteria RGE_RS01825 f7ee03880247b5cd9eac0b413b59268c 190 Gene3D G3DSA:1.20.1540.10 21 170 1.9E-9 T 26-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RGE_RS05660 fa705ef765dd1077430bcb3901c3fc27 108 SUPERFAMILY SSF103481 6 106 4.32E-18 T 26-04-2016 RGE_RS05660 fa705ef765dd1077430bcb3901c3fc27 108 PANTHER PTHR30561 1 108 3.6E-42 T 26-04-2016 RGE_RS05660 fa705ef765dd1077430bcb3901c3fc27 108 Pfam PF00893 Small Multidrug Resistance protein 3 93 1.0E-24 T 26-04-2016 IPR000390 Small multidrug resistance protein family GO:0016021 RGE_RS05660 fa705ef765dd1077430bcb3901c3fc27 108 PANTHER PTHR30561:SF1 1 108 3.6E-42 T 26-04-2016 RGE_RS00570 70e9fcc2148336f0dcb9b0582bd337a5 343 PANTHER PTHR30024:SF8 1 271 1.2E-51 T 26-04-2016 RGE_RS00570 70e9fcc2148336f0dcb9b0582bd337a5 343 Gene3D G3DSA:3.40.190.10 126 249 3.0E-20 T 26-04-2016 RGE_RS00570 70e9fcc2148336f0dcb9b0582bd337a5 343 Pfam PF13379 NMT1-like family 30 259 4.2E-23 T 26-04-2016 RGE_RS00570 70e9fcc2148336f0dcb9b0582bd337a5 343 PANTHER PTHR30024 1 271 1.2E-51 T 26-04-2016 RGE_RS00570 70e9fcc2148336f0dcb9b0582bd337a5 343 SUPERFAMILY SSF53850 31 280 4.3E-41 T 26-04-2016 RGE_RS10670 a35162e2d55554292b9aad59322953f6 209 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 67 89 - T 26-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RGE_RS10670 a35162e2d55554292b9aad59322953f6 209 PANTHER PTHR15362:SF2 11 158 2.5E-38 T 26-04-2016 RGE_RS10670 a35162e2d55554292b9aad59322953f6 209 PANTHER PTHR15362 11 158 2.5E-38 T 26-04-2016 RGE_RS10670 a35162e2d55554292b9aad59322953f6 209 Pfam PF01066 CDP-alcohol phosphatidyltransferase 19 89 5.4E-13 T 26-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RGE_RS10670 a35162e2d55554292b9aad59322953f6 209 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 24 167 6.1E-34 T 26-04-2016 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 RGE_RS00820 0af170160613670a11f19a16065f2867 136 Gene3D G3DSA:3.30.160.200 8 105 1.6E-29 T 26-04-2016 RGE_RS00820 0af170160613670a11f19a16065f2867 136 Pfam PF00472 RF-1 domain 8 130 5.2E-22 T 26-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RGE_RS00820 0af170160613670a11f19a16065f2867 136 SUPERFAMILY SSF75620 8 114 1.88E-9 T 26-04-2016 RGE_RS00820 0af170160613670a11f19a16065f2867 136 PANTHER PTHR11075 8 131 6.2E-30 T 26-04-2016 RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 SUPERFAMILY SSF52540 17 213 1.19E-35 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 PANTHER PTHR19211:SF6 293 518 3.9E-150 T 26-04-2016 RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 PANTHER PTHR19211:SF6 6 271 3.9E-150 T 26-04-2016 RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 PANTHER PTHR19211 293 518 3.9E-150 T 26-04-2016 RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 PANTHER PTHR19211 6 271 3.9E-150 T 26-04-2016 RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 Pfam PF00005 ABC transporter 32 171 7.0E-16 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 Pfam PF00005 ABC transporter 355 482 4.3E-15 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 Gene3D G3DSA:3.40.50.300 18 262 4.6E-31 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 Gene3D G3DSA:3.40.50.300 356 517 3.3E-28 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 SMART SM00382 362 529 6.1E-14 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 SMART SM00382 30 216 2.1E-9 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS11620 f45ac06d642fc7a8f4f87da0e63f9395 535 SUPERFAMILY SSF52540 356 517 1.17E-30 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03445 b7032d7ecb3cc83df4a37d890753019c 403 ProSitePatterns PS00571 Amidases signature. 109 140 - T 26-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS03445 b7032d7ecb3cc83df4a37d890753019c 403 SUPERFAMILY SSF75304 10 399 2.49E-90 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS03445 b7032d7ecb3cc83df4a37d890753019c 403 PANTHER PTHR11895 10 396 2.1E-85 T 26-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS03445 b7032d7ecb3cc83df4a37d890753019c 403 Gene3D G3DSA:3.90.1300.10 17 397 6.3E-88 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS03445 b7032d7ecb3cc83df4a37d890753019c 403 Pfam PF01425 Amidase 307 395 2.3E-10 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS03445 b7032d7ecb3cc83df4a37d890753019c 403 Pfam PF01425 Amidase 21 193 9.3E-60 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS20255 a744b9bb70db494d8b78c3e246253229 354 Gene3D G3DSA:3.30.360.10 151 350 6.9E-43 T 26-04-2016 RGE_RS20255 a744b9bb70db494d8b78c3e246253229 354 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 14 131 6.6E-29 T 26-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RGE_RS20255 a744b9bb70db494d8b78c3e246253229 354 SUPERFAMILY SSF55347 138 289 7.19E-34 T 26-04-2016 RGE_RS20255 a744b9bb70db494d8b78c3e246253229 354 PANTHER PTHR22604:SF120 14 354 2.1E-91 T 26-04-2016 RGE_RS20255 a744b9bb70db494d8b78c3e246253229 354 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 145 259 2.3E-13 T 26-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RGE_RS20255 a744b9bb70db494d8b78c3e246253229 354 SUPERFAMILY SSF51735 9 168 1.04E-47 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20255 a744b9bb70db494d8b78c3e246253229 354 PANTHER PTHR22604 14 354 2.1E-91 T 26-04-2016 RGE_RS20255 a744b9bb70db494d8b78c3e246253229 354 Gene3D G3DSA:3.40.50.720 11 150 6.4E-44 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS10120 278306bfedc65cfd771de99950d8bcf6 128 SUPERFAMILY SSF46785 8 119 3.7E-33 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10120 278306bfedc65cfd771de99950d8bcf6 128 Gene3D G3DSA:1.10.10.10 4 120 1.0E-45 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10120 278306bfedc65cfd771de99950d8bcf6 128 PANTHER PTHR33204 13 117 1.3E-42 T 26-04-2016 RGE_RS10120 278306bfedc65cfd771de99950d8bcf6 128 PANTHER PTHR33204:SF15 13 117 1.3E-42 T 26-04-2016 RGE_RS10120 278306bfedc65cfd771de99950d8bcf6 128 Pfam PF01638 HxlR-like helix-turn-helix 23 110 7.4E-27 T 26-04-2016 IPR002577 Helix-turn-helix, HxlR type RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 Gene3D G3DSA:3.40.630.10 405 622 3.5E-105 T 26-04-2016 RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 Gene3D G3DSA:3.40.630.10 748 806 3.5E-105 T 26-04-2016 RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 SUPERFAMILY SSF53686 42 380 5.89E-60 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 Pfam PF07687 Peptidase dimerisation domain 609 710 1.1E-5 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 40 371 5.3E-65 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 408 802 1.5E-125 T 26-04-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 Gene3D G3DSA:3.40.50.1100 116 376 2.4E-39 T 26-04-2016 RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 SUPERFAMILY SSF55031 610 726 1.2E-27 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 Gene3D G3DSA:3.30.70.360 623 726 1.6E-35 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 PANTHER PTHR32494 358 806 9.0E-155 T 26-04-2016 RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 Pfam PF01546 Peptidase family M20/M25/M40 477 803 9.3E-35 T 26-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 SUPERFAMILY SSF53187 405 620 3.43E-88 T 26-04-2016 RGE_RS04890 5c195333a71421d04e65236bd25c91d0 807 SUPERFAMILY SSF53187 733 806 3.43E-88 T 26-04-2016 RGE_RS05520 41f63710da52757d1875906bd9286b3f 793 PANTHER PTHR33406:SF2 125 778 8.9E-76 T 26-04-2016 RGE_RS05520 41f63710da52757d1875906bd9286b3f 793 Pfam PF03176 MMPL family 162 410 1.4E-8 T 26-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 RGE_RS05520 41f63710da52757d1875906bd9286b3f 793 Pfam PF03176 MMPL family 577 783 9.0E-16 T 26-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 RGE_RS05520 41f63710da52757d1875906bd9286b3f 793 Gene3D G3DSA:1.20.1640.10 597 784 9.5E-29 T 26-04-2016 RGE_RS05520 41f63710da52757d1875906bd9286b3f 793 Gene3D G3DSA:1.20.1640.10 190 390 1.2E-27 T 26-04-2016 RGE_RS05520 41f63710da52757d1875906bd9286b3f 793 PANTHER PTHR33406 125 778 8.9E-76 T 26-04-2016 RGE_RS05520 41f63710da52757d1875906bd9286b3f 793 PANTHER PTHR33406:SF2 2 100 8.9E-76 T 26-04-2016 RGE_RS05520 41f63710da52757d1875906bd9286b3f 793 SUPERFAMILY SSF82866 578 779 1.12E-32 T 26-04-2016 RGE_RS05520 41f63710da52757d1875906bd9286b3f 793 SUPERFAMILY SSF82866 165 385 1.57E-28 T 26-04-2016 RGE_RS05520 41f63710da52757d1875906bd9286b3f 793 PANTHER PTHR33406 2 100 8.9E-76 T 26-04-2016 RGE_RS07295 650379bdc100c686e2ec362efb6d94b4 310 SUPERFAMILY SSF47823 18 113 4.51E-27 T 26-04-2016 IPR010998 Integrase, Lambda-type, N-terminal RGE_RS07295 650379bdc100c686e2ec362efb6d94b4 310 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 17 310 57.416 T 26-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RGE_RS07295 650379bdc100c686e2ec362efb6d94b4 310 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 21 103 6.0E-18 T 26-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RGE_RS07295 650379bdc100c686e2ec362efb6d94b4 310 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 23 309 7.0E-106 T 26-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RGE_RS07295 650379bdc100c686e2ec362efb6d94b4 310 Gene3D G3DSA:1.10.150.130 20 112 2.2E-23 T 26-04-2016 IPR023109 Integrase/recombinase, N-terminal RGE_RS07295 650379bdc100c686e2ec362efb6d94b4 310 SUPERFAMILY SSF56349 121 307 2.12E-52 T 26-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RGE_RS07295 650379bdc100c686e2ec362efb6d94b4 310 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 17 310 30.032 T 26-04-2016 IPR023009 Tyrosine recombinase XerC/XerD RGE_RS07295 650379bdc100c686e2ec362efb6d94b4 310 Gene3D G3DSA:1.10.443.10 125 300 1.5E-53 T 26-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS07295 650379bdc100c686e2ec362efb6d94b4 310 PANTHER PTHR30349 6 309 2.1E-101 T 26-04-2016 RGE_RS07295 650379bdc100c686e2ec362efb6d94b4 310 Pfam PF00589 Phage integrase family 125 295 3.5E-47 T 26-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS07295 650379bdc100c686e2ec362efb6d94b4 310 PANTHER PTHR30349:SF5 6 309 2.1E-101 T 26-04-2016 RGE_RS01060 ae74c2ac707e675f2ec6fc33de3996bf 302 PANTHER PTHR30373:SF2 1 302 3.2E-61 T 26-04-2016 RGE_RS01060 ae74c2ac707e675f2ec6fc33de3996bf 302 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 32 154 7.0E-33 T 26-04-2016 IPR007621 TPM domain RGE_RS01060 ae74c2ac707e675f2ec6fc33de3996bf 302 PANTHER PTHR30373 1 302 3.2E-61 T 26-04-2016 RGE_RS01025 4cc90cb146c03a61a9e3b1201e64b3e5 320 PANTHER PTHR36838 1 318 1.8E-29 T 26-04-2016 RGE_RS01025 4cc90cb146c03a61a9e3b1201e64b3e5 320 Pfam PF03547 Membrane transport protein 9 143 9.7E-14 T 26-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RGE_RS01025 4cc90cb146c03a61a9e3b1201e64b3e5 320 Pfam PF03547 Membrane transport protein 154 309 9.2E-9 T 26-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 Pfam PF07724 AAA domain (Cdc48 subfamily) 116 312 3.1E-49 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 SUPERFAMILY SSF57716 13 48 7.56E-12 T 26-04-2016 RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 319 391 4.1E-15 T 26-04-2016 IPR019489 Clp ATPase, C-terminal RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 10 413 3.6E-202 T 26-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 SMART SM00382 115 268 2.5E-12 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 Gene3D G3DSA:1.10.8.60 318 420 4.1E-36 T 26-04-2016 RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 PANTHER PTHR11262 3 423 1.7E-243 T 26-04-2016 RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 Gene3D G3DSA:3.40.50.300 296 313 1.2E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 Gene3D G3DSA:3.40.50.300 68 257 1.2E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 SMART SM01086 319 414 6.3E-34 T 26-04-2016 IPR019489 Clp ATPase, C-terminal RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 Pfam PF06689 ClpX C4-type zinc finger 13 49 2.2E-20 T 26-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 SUPERFAMILY SSF52540 64 406 2.26E-76 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 PANTHER PTHR11262:SF4 3 423 1.7E-243 T 26-04-2016 RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 SMART SM00994 12 51 6.7E-24 T 26-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RGE_RS13600 efd67cf2dae9f14680e1765e1a999aab 423 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 417 53.04 T 26-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RGE_RS11440 1f24fd6735f7e70eaa9cbb8f243a1313 189 SMART SM00530 21 76 4.0E-16 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS11440 1f24fd6735f7e70eaa9cbb8f243a1313 189 PANTHER PTHR10245:SF9 18 184 1.4E-31 T 26-04-2016 RGE_RS11440 1f24fd6735f7e70eaa9cbb8f243a1313 189 SUPERFAMILY SSF51182 62 184 2.19E-18 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS11440 1f24fd6735f7e70eaa9cbb8f243a1313 189 PANTHER PTHR10245 18 184 1.4E-31 T 26-04-2016 RGE_RS11440 1f24fd6735f7e70eaa9cbb8f243a1313 189 Pfam PF01381 Helix-turn-helix 22 75 1.5E-15 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS11440 1f24fd6735f7e70eaa9cbb8f243a1313 189 Gene3D G3DSA:2.60.120.10 105 184 5.1E-20 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS11440 1f24fd6735f7e70eaa9cbb8f243a1313 189 Gene3D G3DSA:1.10.260.40 17 81 1.2E-19 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS11440 1f24fd6735f7e70eaa9cbb8f243a1313 189 SUPERFAMILY SSF47413 16 79 5.09E-17 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS11440 1f24fd6735f7e70eaa9cbb8f243a1313 189 Pfam PF07883 Cupin domain 118 184 2.3E-10 T 26-04-2016 IPR013096 Cupin 2, conserved barrel RGE_RS01165 54c0845e5c54baaff137c35277129083 242 SUPERFAMILY SSF55186 101 236 7.06E-28 T 26-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RGE_RS01165 54c0845e5c54baaff137c35277129083 242 Pfam PF01411 tRNA synthetases class II (A) 27 99 4.2E-10 T 26-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 RGE_RS01165 54c0845e5c54baaff137c35277129083 242 PANTHER PTHR11777 10 236 2.4E-49 T 26-04-2016 RGE_RS01165 54c0845e5c54baaff137c35277129083 242 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 193 236 3.9E-13 T 26-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RGE_RS01165 54c0845e5c54baaff137c35277129083 242 SUPERFAMILY SSF50447 3 81 2.61E-12 T 26-04-2016 IPR009000 Translation protein, beta-barrel domain RGE_RS01165 54c0845e5c54baaff137c35277129083 242 SMART SM00863 193 236 6.0E-16 T 26-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RGE_RS22820 d6289bb03edce2bea5731cc10d24c020 144 PRINTS PR00421 Thioredoxin family signature 60 68 1.7E-7 T 26-04-2016 RGE_RS22820 d6289bb03edce2bea5731cc10d24c020 144 PRINTS PR00421 Thioredoxin family signature 68 77 1.7E-7 T 26-04-2016 RGE_RS22820 d6289bb03edce2bea5731cc10d24c020 144 PRINTS PR00421 Thioredoxin family signature 108 119 1.7E-7 T 26-04-2016 RGE_RS22820 d6289bb03edce2bea5731cc10d24c020 144 Pfam PF00085 Thioredoxin 43 141 3.8E-26 T 26-04-2016 IPR013766 Thioredoxin domain GO:0045454 RGE_RS22820 d6289bb03edce2bea5731cc10d24c020 144 ProSitePatterns PS00194 Thioredoxin family active site. 61 79 - T 26-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RGE_RS22820 d6289bb03edce2bea5731cc10d24c020 144 PANTHER PTHR10438 13 144 2.8E-40 T 26-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RGE_RS22820 d6289bb03edce2bea5731cc10d24c020 144 TIGRFAM TIGR01068 thioredoxin: thioredoxin 46 139 6.7E-29 T 26-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RGE_RS22820 d6289bb03edce2bea5731cc10d24c020 144 SUPERFAMILY SSF52833 28 141 1.85E-35 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS22820 d6289bb03edce2bea5731cc10d24c020 144 Gene3D G3DSA:3.40.30.10 38 141 6.0E-31 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS22820 d6289bb03edce2bea5731cc10d24c020 144 PANTHER PTHR10438:SF281 13 144 2.8E-40 T 26-04-2016 RGE_RS13290 dcda91af2f1f95ffdb78b27356d0af6d 278 PANTHER PTHR13773:SF0 1 275 1.4E-46 T 26-04-2016 RGE_RS13290 dcda91af2f1f95ffdb78b27356d0af6d 278 Pfam PF01148 Cytidylyltransferase family 4 275 5.6E-52 T 26-04-2016 RGE_RS13290 dcda91af2f1f95ffdb78b27356d0af6d 278 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 237 263 - T 26-04-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 RGE_RS13290 dcda91af2f1f95ffdb78b27356d0af6d 278 PANTHER PTHR13773 1 275 1.4E-46 T 26-04-2016 RGE_RS14745 b6e4556faa07d2d756f03902de21aae0 439 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 436 5.7E-102 T 26-04-2016 IPR010263 Type VI secretion protein, VC_A0114 RGE_RS14745 b6e4556faa07d2d756f03902de21aae0 439 PANTHER PTHR35566 1 439 9.8E-69 T 26-04-2016 RGE_RS14745 b6e4556faa07d2d756f03902de21aae0 439 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 6 437 8.8E-99 T 26-04-2016 IPR010263 Type VI secretion protein, VC_A0114 RGE_RS04380 219e2fcb696d91488f410e41a3a2f8d3 421 Pfam PF06545 Protein of unknown function (DUF1116) 87 302 2.2E-99 T 26-04-2016 IPR009499 Protein of unknown function DUF1116 RGE_RS04380 219e2fcb696d91488f410e41a3a2f8d3 421 Gene3D G3DSA:3.90.1700.10 250 416 6.3E-79 T 26-04-2016 RGE_RS04380 219e2fcb696d91488f410e41a3a2f8d3 421 Gene3D G3DSA:1.10.10.660 39 99 5.6E-35 T 26-04-2016 IPR024033 Uncharacterised domain, YlbE RGE_RS04380 219e2fcb696d91488f410e41a3a2f8d3 421 Gene3D G3DSA:3.90.1710.10 100 248 3.3E-71 T 26-04-2016 RGE_RS20510 3c0165c8e5d8351423b011337b9bb556 766 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 559 763 2.8E-43 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS20510 3c0165c8e5d8351423b011337b9bb556 766 PANTHER PTHR32089 471 766 1.3E-86 T 26-04-2016 RGE_RS20510 3c0165c8e5d8351423b011337b9bb556 766 PANTHER PTHR32089 1 30 1.3E-86 T 26-04-2016 RGE_RS20510 3c0165c8e5d8351423b011337b9bb556 766 SMART SM00283 503 764 4.3E-69 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS20510 3c0165c8e5d8351423b011337b9bb556 766 PANTHER PTHR32089:SF43 471 766 1.3E-86 T 26-04-2016 RGE_RS20510 3c0165c8e5d8351423b011337b9bb556 766 PANTHER PTHR32089:SF43 1 30 1.3E-86 T 26-04-2016 RGE_RS20510 3c0165c8e5d8351423b011337b9bb556 766 Gene3D G3DSA:1.10.287.950 519 735 2.4E-48 T 26-04-2016 RGE_RS20510 3c0165c8e5d8351423b011337b9bb556 766 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 251 346 1.0E-5 T 26-04-2016 IPR029095 NarX-like, N-terminal RGE_RS20510 3c0165c8e5d8351423b011337b9bb556 766 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 124 224 2.8E-14 T 26-04-2016 IPR029095 NarX-like, N-terminal RGE_RS20510 3c0165c8e5d8351423b011337b9bb556 766 SUPERFAMILY SSF58104 464 765 2.49E-61 T 26-04-2016 RGE_RS09120 bb0c5ef04f6fa9f350b0fbe84cd4cf42 104 TIGRFAM TIGR04438 small_Trp_rich: small Trp-rich protein 1 76 9.8E-33 T 26-04-2016 IPR031044 Small Trp-rich protein RGE_RS20100 748b4148ff3f9296c88c79c8ab9a2019 184 Pfam PF02620 Uncharacterized ACR, COG1399 72 179 4.2E-21 T 26-04-2016 IPR003772 Protein of unknown function DUF177 RGE_RS20100 748b4148ff3f9296c88c79c8ab9a2019 184 PANTHER PTHR38099 4 181 3.8E-23 T 26-04-2016 RGE_RS17005 3c859ad8cbd01bcaa190f22fd3324e7d 256 SUPERFAMILY SSF103642 234 254 4.25E-8 T 26-04-2016 RGE_RS17005 3c859ad8cbd01bcaa190f22fd3324e7d 256 Pfam PF03695 Uncharacterised protein family (UPF0149) 29 186 3.4E-18 T 26-04-2016 IPR011978 Uncharacterised protein family UPF0149 RGE_RS17005 3c859ad8cbd01bcaa190f22fd3324e7d 256 Gene3D G3DSA:3.10.450.50 209 254 4.6E-12 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS17005 3c859ad8cbd01bcaa190f22fd3324e7d 256 Pfam PF02810 SEC-C motif 236 253 1.4E-11 T 26-04-2016 IPR004027 SEC-C motif RGE_RS17005 3c859ad8cbd01bcaa190f22fd3324e7d 256 SUPERFAMILY SSF101327 17 174 2.09E-6 T 26-04-2016 IPR011978 Uncharacterised protein family UPF0149 RGE_RS17005 3c859ad8cbd01bcaa190f22fd3324e7d 256 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 24 93 1.2E-10 T 26-04-2016 IPR011978 Uncharacterised protein family UPF0149 RGE_RS14695 941b5bbb4161fd5ade11482b07d3c9ed 200 SUPERFAMILY SSF48452 36 170 1.06E-14 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS14695 941b5bbb4161fd5ade11482b07d3c9ed 200 Gene3D G3DSA:1.25.40.10 36 174 2.1E-13 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS11170 7707960bf5c33f131a5f9848624fbe91 206 PANTHER PTHR11403:SF6 30 206 9.1E-46 T 26-04-2016 RGE_RS11170 7707960bf5c33f131a5f9848624fbe91 206 Pfam PF00510 Cytochrome c oxidase subunit III 36 204 2.9E-12 T 26-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RGE_RS11170 7707960bf5c33f131a5f9848624fbe91 206 PANTHER PTHR11403 30 206 9.1E-46 T 26-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 RGE_RS11170 7707960bf5c33f131a5f9848624fbe91 206 SUPERFAMILY SSF81452 27 205 5.76E-41 T 26-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RGE_RS11170 7707960bf5c33f131a5f9848624fbe91 206 Gene3D G3DSA:1.20.120.80 29 205 1.7E-40 T 26-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 RGE_RS01015 212a367a75758355d0b9f27257f05a00 352 Pfam PF02574 Homocysteine S-methyltransferase 23 332 1.2E-90 T 26-04-2016 IPR003726 Homocysteine-binding domain RGE_RS01015 212a367a75758355d0b9f27257f05a00 352 PANTHER PTHR21091 16 348 4.7E-159 T 26-04-2016 RGE_RS01015 212a367a75758355d0b9f27257f05a00 352 Gene3D G3DSA:3.20.20.330 12 342 1.9E-117 T 26-04-2016 IPR003726 Homocysteine-binding domain RGE_RS01015 212a367a75758355d0b9f27257f05a00 352 PANTHER PTHR21091:SF112 16 348 4.7E-159 T 26-04-2016 RGE_RS01015 212a367a75758355d0b9f27257f05a00 352 SUPERFAMILY SSF82282 14 343 1.83E-100 T 26-04-2016 IPR003726 Homocysteine-binding domain RGE_RS05015 03c9ae45c75553446a32eace0c989388 496 PANTHER PTHR34217 1 495 1.1E-220 T 26-04-2016 RGE_RS05015 03c9ae45c75553446a32eace0c989388 496 SUPERFAMILY SSF55486 4 495 3.91E-105 T 26-04-2016 RGE_RS05015 03c9ae45c75553446a32eace0c989388 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 446 464 5.0E-37 T 26-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RGE_RS05015 03c9ae45c75553446a32eace0c989388 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 401 422 5.0E-37 T 26-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RGE_RS05015 03c9ae45c75553446a32eace0c989388 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 148 168 5.0E-37 T 26-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RGE_RS05015 03c9ae45c75553446a32eace0c989388 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 331 350 5.0E-37 T 26-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RGE_RS05015 03c9ae45c75553446a32eace0c989388 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 291 307 5.0E-37 T 26-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RGE_RS05015 03c9ae45c75553446a32eace0c989388 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 244 263 5.0E-37 T 26-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RGE_RS05015 03c9ae45c75553446a32eace0c989388 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 264 283 5.0E-37 T 26-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RGE_RS05015 03c9ae45c75553446a32eace0c989388 496 PANTHER PTHR34217:SF1 1 495 1.1E-220 T 26-04-2016 RGE_RS05015 03c9ae45c75553446a32eace0c989388 496 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 25 492 1.8E-75 T 26-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RGE_RS05015 03c9ae45c75553446a32eace0c989388 496 PIRSF PIRSF006615 2 496 3.6E-176 T 26-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RGE_RS08990 761138f198860a294864ee2444df1797 376 PANTHER PTHR30294 1 372 4.7E-208 T 26-04-2016 RGE_RS08990 761138f198860a294864ee2444df1797 376 Pfam PF12698 ABC-2 family transporter protein 29 365 2.2E-28 T 26-04-2016 RGE_RS08990 761138f198860a294864ee2444df1797 376 PANTHER PTHR30294:SF22 1 372 4.7E-208 T 26-04-2016 RGE_RS11640 e8e2d004eab1f8af16bec55e5c244c9e 1179 Gene3D G3DSA:3.30.1330.60 1123 1153 2.2E-9 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS11640 e8e2d004eab1f8af16bec55e5c244c9e 1179 Gene3D G3DSA:3.30.1330.60 997 1040 2.2E-9 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS11640 e8e2d004eab1f8af16bec55e5c244c9e 1179 Pfam PF05359 Domain of Unknown Function (DUF748) 787 933 1.1E-33 T 26-04-2016 IPR008023 Protein of unknown function DUF748 RGE_RS11640 e8e2d004eab1f8af16bec55e5c244c9e 1179 Pfam PF05359 Domain of Unknown Function (DUF748) 555 722 1.4E-20 T 26-04-2016 IPR008023 Protein of unknown function DUF748 RGE_RS11640 e8e2d004eab1f8af16bec55e5c244c9e 1179 Pfam PF05359 Domain of Unknown Function (DUF748) 351 489 1.4E-15 T 26-04-2016 IPR008023 Protein of unknown function DUF748 RGE_RS11640 e8e2d004eab1f8af16bec55e5c244c9e 1179 Pfam PF05359 Domain of Unknown Function (DUF748) 145 298 2.0E-23 T 26-04-2016 IPR008023 Protein of unknown function DUF748 RGE_RS03310 e83832cb062f9da4bff75c75f1acc5b3 348 Gene3D G3DSA:3.20.20.120 135 329 7.1E-34 T 26-04-2016 IPR029065 Enolase C-terminal domain-like RGE_RS03310 e83832cb062f9da4bff75c75f1acc5b3 348 PANTHER PTHR13794 1 335 7.1E-36 T 26-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 RGE_RS03310 e83832cb062f9da4bff75c75f1acc5b3 348 SUPERFAMILY SSF51604 136 330 2.89E-32 T 26-04-2016 IPR029065 Enolase C-terminal domain-like RGE_RS03310 e83832cb062f9da4bff75c75f1acc5b3 348 SUPERFAMILY SSF54826 20 116 2.5E-10 T 26-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RGE_RS03310 e83832cb062f9da4bff75c75f1acc5b3 348 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 193 224 - T 26-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 RGE_RS03310 e83832cb062f9da4bff75c75f1acc5b3 348 SMART SM00922 145 235 1.7E-9 T 26-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RGE_RS03310 e83832cb062f9da4bff75c75f1acc5b3 348 Gene3D G3DSA:3.30.390.10 19 126 1.5E-13 T 26-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RGE_RS03310 e83832cb062f9da4bff75c75f1acc5b3 348 PANTHER PTHR13794:SF8 1 335 7.1E-36 T 26-04-2016 IPR010197 o-succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00079|UniPathway: UPA01057 RGE_RS03310 e83832cb062f9da4bff75c75f1acc5b3 348 Pfam PF13378 Enolase C-terminal domain-like 153 316 1.4E-12 T 26-04-2016 IPR029065 Enolase C-terminal domain-like RGE_RS19965 b1c8803a4d7b141d9e2cc0cac4b81f69 337 Pfam PF01343 Peptidase family S49 153 300 4.2E-38 T 26-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RGE_RS19965 b1c8803a4d7b141d9e2cc0cac4b81f69 337 SUPERFAMILY SSF52096 77 198 3.16E-43 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS19965 b1c8803a4d7b141d9e2cc0cac4b81f69 337 SUPERFAMILY SSF52096 227 288 3.16E-43 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS19965 b1c8803a4d7b141d9e2cc0cac4b81f69 337 PANTHER PTHR30341:SF1 35 335 6.9E-92 T 26-04-2016 RGE_RS19965 b1c8803a4d7b141d9e2cc0cac4b81f69 337 PANTHER PTHR30341 35 335 6.9E-92 T 26-04-2016 RGE_RS19965 b1c8803a4d7b141d9e2cc0cac4b81f69 337 Gene3D G3DSA:3.90.226.10 64 190 1.1E-45 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS19965 b1c8803a4d7b141d9e2cc0cac4b81f69 337 Gene3D G3DSA:3.90.226.10 228 314 1.1E-45 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS16585 fe714da65104a18f2232ba8ac3e1fd3e 292 PANTHER PTHR10366 5 290 1.2E-46 T 26-04-2016 RGE_RS16585 fe714da65104a18f2232ba8ac3e1fd3e 292 Gene3D G3DSA:3.40.50.720 18 281 7.0E-30 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS16585 fe714da65104a18f2232ba8ac3e1fd3e 292 Pfam PF02254 TrkA-N domain 7 62 5.9E-5 T 26-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RGE_RS16585 fe714da65104a18f2232ba8ac3e1fd3e 292 SUPERFAMILY SSF51735 6 288 1.84E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS16585 fe714da65104a18f2232ba8ac3e1fd3e 292 Pfam PF01370 NAD dependent epimerase/dehydratase family 85 207 6.7E-9 T 26-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RGE_RS16585 fe714da65104a18f2232ba8ac3e1fd3e 292 PANTHER PTHR10366:SF430 5 290 1.2E-46 T 26-04-2016 RGE_RS15015 fcb3b81a186ba70ee3635802aba5562c 269 Pfam PF03180 NLPA lipoprotein 30 269 1.8E-69 T 26-04-2016 IPR004872 Lipoprotein NlpA family RGE_RS15015 fcb3b81a186ba70ee3635802aba5562c 269 PIRSF PIRSF002854 1 269 1.6E-74 T 26-04-2016 IPR004872 Lipoprotein NlpA family RGE_RS15015 fcb3b81a186ba70ee3635802aba5562c 269 Gene3D G3DSA:3.40.190.10 29 157 2.0E-44 T 26-04-2016 RGE_RS15015 fcb3b81a186ba70ee3635802aba5562c 269 SUPERFAMILY SSF53850 30 269 4.13E-66 T 26-04-2016 RGE_RS15015 fcb3b81a186ba70ee3635802aba5562c 269 PANTHER PTHR30429 2 269 1.8E-92 T 26-04-2016 IPR004872 Lipoprotein NlpA family RGE_RS18480 6b8be3c3534e4bc08dae3213ecbe4484 130 Pfam PF06803 Protein of unknown function (DUF1232) 37 72 5.0E-14 T 26-04-2016 IPR010652 Protein of unknown function DUF1232 UniPathway: UPA00143 RGE_RS19140 47e1ddcdb103938bec989ffc2077aa84 345 Gene3D G3DSA:3.40.190.10 226 287 8.3E-4 T 26-04-2016 RGE_RS19140 47e1ddcdb103938bec989ffc2077aa84 345 SUPERFAMILY SSF46785 23 108 7.16E-17 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19140 47e1ddcdb103938bec989ffc2077aa84 345 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 28 84 1.5E-11 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS19140 47e1ddcdb103938bec989ffc2077aa84 345 Gene3D G3DSA:1.10.10.10 17 118 1.6E-24 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS19140 47e1ddcdb103938bec989ffc2077aa84 345 Pfam PF12727 PBP superfamily domain 142 318 7.9E-21 T 26-04-2016 IPR024370 PBP domain RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 Gene3D G3DSA:3.50.50.60 3 159 8.6E-30 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 Gene3D G3DSA:3.50.50.60 249 336 8.6E-30 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 Pfam PF01494 FAD binding domain 4 72 4.7E-5 T 26-04-2016 IPR002938 FAD-binding domain GO:0071949 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 Pfam PF01494 FAD binding domain 116 323 4.9E-13 T 26-04-2016 IPR002938 FAD-binding domain GO:0071949 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 PANTHER PTHR13789:SF5 5 369 1.4E-67 T 26-04-2016 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 275 288 - T 26-04-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 133 148 8.7E-15 T 26-04-2016 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.7E-15 T 26-04-2016 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 261 276 8.7E-15 T 26-04-2016 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 292 8.7E-15 T 26-04-2016 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 SUPERFAMILY SSF51905 248 364 1.68E-41 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 SUPERFAMILY SSF51905 4 154 1.68E-41 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 131 369 1.3E-69 T 26-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 RGE_RS20305 dcaac6ee48b320d6bdd05de856ecd4af 380 PANTHER PTHR13789 5 369 1.4E-67 T 26-04-2016 RGE_RS09335 80e2c7d3c7d14a4631cf20399fbee1dc 438 Pfam PF06245 Protein of unknown function (DUF1015) 13 432 1.1E-72 T 26-04-2016 IPR008323 Uncharacterised conserved protein UCP033563 RGE_RS15445 fda6fe99292be61470d9319062dc576b 79 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 4.1E-28 T 26-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RGE_RS15445 fda6fe99292be61470d9319062dc576b 79 SMART SM00357 3 67 1.7E-25 T 26-04-2016 IPR011129 Cold shock protein GO:0003676 RGE_RS15445 fda6fe99292be61470d9319062dc576b 79 PRINTS PR00050 Cold shock protein signature 25 34 5.8E-16 T 26-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RGE_RS15445 fda6fe99292be61470d9319062dc576b 79 PRINTS PR00050 Cold shock protein signature 4 19 5.8E-16 T 26-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RGE_RS15445 fda6fe99292be61470d9319062dc576b 79 PRINTS PR00050 Cold shock protein signature 40 58 5.8E-16 T 26-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RGE_RS15445 fda6fe99292be61470d9319062dc576b 79 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 26-04-2016 IPR019844 Cold-shock conserved site RGE_RS15445 fda6fe99292be61470d9319062dc576b 79 PIRSF PIRSF002599 1 77 6.1E-24 T 26-04-2016 IPR012156 Cold shock, CspA GO:0003676 RGE_RS15445 fda6fe99292be61470d9319062dc576b 79 PANTHER PTHR11544 1 74 5.5E-34 T 26-04-2016 RGE_RS15445 fda6fe99292be61470d9319062dc576b 79 Gene3D G3DSA:2.40.50.140 1 65 4.2E-29 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS15445 fda6fe99292be61470d9319062dc576b 79 SUPERFAMILY SSF50249 1 66 4.5E-24 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS10920 1ba1bd415ce0689bd55f2b2b99e25083 447 PIRSF PIRSF004810 1 447 7.0E-118 T 26-04-2016 IPR014047 Chromate transporter, long chain RGE_RS10920 1ba1bd415ce0689bd55f2b2b99e25083 447 PANTHER PTHR33567 15 442 2.6E-95 T 26-04-2016 RGE_RS10920 1ba1bd415ce0689bd55f2b2b99e25083 447 Pfam PF02417 Chromate transporter 19 180 6.2E-34 T 26-04-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 RGE_RS10920 1ba1bd415ce0689bd55f2b2b99e25083 447 Pfam PF02417 Chromate transporter 256 440 1.1E-29 T 26-04-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 RGE_RS10920 1ba1bd415ce0689bd55f2b2b99e25083 447 PANTHER PTHR33567:SF1 15 442 2.6E-95 T 26-04-2016 RGE_RS10920 1ba1bd415ce0689bd55f2b2b99e25083 447 TIGRFAM TIGR00937 2A51: chromate efflux transporter 23 440 9.9E-65 T 26-04-2016 IPR014047 Chromate transporter, long chain RGE_RS19445 d844070826c21ba0fbe6419e2290d933 418 SUPERFAMILY SSF53187 322 409 2.38E-50 T 26-04-2016 RGE_RS19445 d844070826c21ba0fbe6419e2290d933 418 SUPERFAMILY SSF53187 7 197 2.38E-50 T 26-04-2016 RGE_RS19445 d844070826c21ba0fbe6419e2290d933 418 Pfam PF07687 Peptidase dimerisation domain 194 302 2.6E-18 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS19445 d844070826c21ba0fbe6419e2290d933 418 Pfam PF01546 Peptidase family M20/M25/M40 92 405 3.8E-27 T 26-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RGE_RS19445 d844070826c21ba0fbe6419e2290d933 418 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 91 100 - T 26-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RGE_RS19445 d844070826c21ba0fbe6419e2290d933 418 PANTHER PTHR11014 8 413 2.3E-53 T 26-04-2016 RGE_RS19445 d844070826c21ba0fbe6419e2290d933 418 Gene3D G3DSA:3.40.630.10 16 206 1.1E-45 T 26-04-2016 RGE_RS19445 d844070826c21ba0fbe6419e2290d933 418 Gene3D G3DSA:3.40.630.10 346 409 1.1E-45 T 26-04-2016 RGE_RS19445 d844070826c21ba0fbe6419e2290d933 418 Gene3D G3DSA:3.30.70.360 207 312 1.1E-25 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS19445 d844070826c21ba0fbe6419e2290d933 418 SUPERFAMILY SSF55031 198 314 7.33E-24 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS01955 57561889c9c6ea63b5c45b0f5d5c1f21 437 Gene3D G3DSA:3.40.630.30 51 187 1.9E-6 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS01955 57561889c9c6ea63b5c45b0f5d5c1f21 437 Pfam PF07238 PilZ domain 317 399 1.2E-6 T 26-04-2016 IPR009875 PilZ domain GO:0035438 RGE_RS01955 57561889c9c6ea63b5c45b0f5d5c1f21 437 SUPERFAMILY SSF55729 42 216 4.83E-18 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS22960 5d5bf54c04f23dca8cc254ef03f27b1f 147 Pfam PF00825 Ribonuclease P 3 135 6.4E-11 T 26-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RGE_RS22960 5d5bf54c04f23dca8cc254ef03f27b1f 147 SUPERFAMILY SSF54211 3 31 7.84E-10 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS22960 5d5bf54c04f23dca8cc254ef03f27b1f 147 SUPERFAMILY SSF54211 66 135 7.84E-10 T 26-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RGE_RS22960 5d5bf54c04f23dca8cc254ef03f27b1f 147 Gene3D G3DSA:3.30.230.10 3 137 1.3E-13 T 26-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 122 277 7.5E-70 T 26-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 Gene3D G3DSA:3.40.50.720 136 260 1.4E-55 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 Gene3D G3DSA:3.40.192.10 7 135 2.6E-42 T 26-04-2016 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 SUPERFAMILY SSF51735 119 276 7.13E-54 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 151 171 1.1E-78 T 26-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 235 251 1.1E-78 T 26-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 106 127 1.1E-78 T 26-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 71 98 1.1E-78 T 26-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 200 229 1.1E-78 T 26-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 30 52 1.1E-78 T 26-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 252 270 1.1E-78 T 26-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 279 37.492 T 26-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 117 2.7E-34 T 26-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 PANTHER PTHR10025 1 276 1.2E-146 T 26-04-2016 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 SUPERFAMILY SSF53223 1 118 5.08E-36 T 26-04-2016 RGE_RS11510 3481b81b67a59b39aae675829802e24b 283 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 256 264 - T 26-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RGE_RS08075 00674961b76e480b2652907e1842090c 253 SUPERFAMILY SSF56672 114 193 2.28E-8 T 26-04-2016 RGE_RS08075 00674961b76e480b2652907e1842090c 253 Gene3D G3DSA:3.30.70.270 67 75 2.2E-5 T 26-04-2016 RGE_RS08075 00674961b76e480b2652907e1842090c 253 Gene3D G3DSA:3.30.70.270 113 193 2.2E-5 T 26-04-2016 RGE_RS08075 00674961b76e480b2652907e1842090c 253 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 33 192 9.8E-18 T 26-04-2016 IPR000477 Reverse transcriptase domain RGE_RS00375 770f1d648349b7b200e13165c1745f11 378 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 11 350 2.9E-138 T 26-04-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 RGE_RS00375 770f1d648349b7b200e13165c1745f11 378 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 200 214 - T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS00375 770f1d648349b7b200e13165c1745f11 378 Pfam PF00437 Type II/IV secretion system protein 126 251 3.5E-36 T 26-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RGE_RS00375 770f1d648349b7b200e13165c1745f11 378 PANTHER PTHR30486 10 367 1.6E-156 T 26-04-2016 RGE_RS00375 770f1d648349b7b200e13165c1745f11 378 Gene3D G3DSA:3.40.50.300 107 351 1.6E-65 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS00375 770f1d648349b7b200e13165c1745f11 378 PANTHER PTHR30486:SF3 10 367 1.6E-156 T 26-04-2016 RGE_RS00375 770f1d648349b7b200e13165c1745f11 378 SUPERFAMILY SSF52540 8 344 1.42E-66 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS17010 36d5f7b7a175d88482b9dd564907c970 180 PANTHER PTHR23091 4 168 4.4E-45 T 26-04-2016 RGE_RS17010 36d5f7b7a175d88482b9dd564907c970 180 Gene3D G3DSA:3.40.630.30 6 168 1.5E-40 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS17010 36d5f7b7a175d88482b9dd564907c970 180 Pfam PF00583 Acetyltransferase (GNAT) family 63 144 1.0E-20 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS17010 36d5f7b7a175d88482b9dd564907c970 180 SUPERFAMILY SSF55729 4 172 1.65E-41 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS17010 36d5f7b7a175d88482b9dd564907c970 180 PANTHER PTHR23091:SF262 4 168 4.4E-45 T 26-04-2016 RGE_RS10600 f6df22383b30936479378ceb3ed64132 530 PANTHER PTHR23513 8 426 2.4E-95 T 26-04-2016 RGE_RS10600 f6df22383b30936479378ceb3ed64132 530 Gene3D G3DSA:1.20.1250.20 221 394 1.7E-12 T 26-04-2016 RGE_RS10600 f6df22383b30936479378ceb3ed64132 530 SUPERFAMILY SSF103473 14 398 6.67E-47 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS10600 f6df22383b30936479378ceb3ed64132 530 Gene3D G3DSA:1.20.1250.20 13 193 1.2E-18 T 26-04-2016 RGE_RS10600 f6df22383b30936479378ceb3ed64132 530 PANTHER PTHR23513:SF7 8 426 2.4E-95 T 26-04-2016 RGE_RS10600 f6df22383b30936479378ceb3ed64132 530 Pfam PF05977 Transmembrane secretion effector 5 523 3.1E-145 T 26-04-2016 IPR010290 Transmembrane secretion effector RGE_RS18820 f38ccc91ec79929ccd16e68b98039a23 206 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 10 201 29.808 T 26-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 RGE_RS18820 f38ccc91ec79929ccd16e68b98039a23 206 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 14 200 3.6E-50 T 26-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 RGE_RS18820 f38ccc91ec79929ccd16e68b98039a23 206 PANTHER PTHR12039 10 205 1.4E-45 T 26-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 RGE_RS18820 f38ccc91ec79929ccd16e68b98039a23 206 Pfam PF01467 Cytidylyltransferase-like 14 175 9.0E-29 T 26-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RGE_RS18820 f38ccc91ec79929ccd16e68b98039a23 206 SUPERFAMILY SSF52374 10 201 7.19E-50 T 26-04-2016 RGE_RS18820 f38ccc91ec79929ccd16e68b98039a23 206 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 12 72 7.1E-8 T 26-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RGE_RS18820 f38ccc91ec79929ccd16e68b98039a23 206 Gene3D G3DSA:3.40.50.620 10 202 8.8E-63 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS22280 9f72c41f63ed5ff3f73e2efcfa43554f 300 SMART SM00062 38 269 1.9E-57 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS22280 9f72c41f63ed5ff3f73e2efcfa43554f 300 Gene3D G3DSA:3.40.190.10 35 122 8.8E-30 T 26-04-2016 RGE_RS22280 9f72c41f63ed5ff3f73e2efcfa43554f 300 Gene3D G3DSA:3.40.190.10 230 268 8.8E-30 T 26-04-2016 RGE_RS22280 9f72c41f63ed5ff3f73e2efcfa43554f 300 PANTHER PTHR30085:SF2 1 290 4.7E-72 T 26-04-2016 RGE_RS22280 9f72c41f63ed5ff3f73e2efcfa43554f 300 Gene3D G3DSA:3.40.190.10 123 229 1.3E-19 T 26-04-2016 RGE_RS22280 9f72c41f63ed5ff3f73e2efcfa43554f 300 PANTHER PTHR30085 1 290 4.7E-72 T 26-04-2016 RGE_RS22280 9f72c41f63ed5ff3f73e2efcfa43554f 300 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 267 3.0E-53 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS22280 9f72c41f63ed5ff3f73e2efcfa43554f 300 SUPERFAMILY SSF53850 10 269 5.61E-58 T 26-04-2016 RGE_RS20395 9f177c0611571e915caf83913dc2f659 168 PIRSF PIRSF005413 1 165 2.6E-52 T 26-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RGE_RS20395 9f177c0611571e915caf83913dc2f659 168 SUPERFAMILY SSF110111 40 158 6.8E-43 T 26-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain RGE_RS20395 9f177c0611571e915caf83913dc2f659 168 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 8 155 3.4E-45 T 26-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RGE_RS20395 9f177c0611571e915caf83913dc2f659 168 Gene3D G3DSA:2.60.370.10 39 160 8.9E-44 T 26-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain RGE_RS20395 9f177c0611571e915caf83913dc2f659 168 PANTHER PTHR21320 1 156 3.2E-31 T 26-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RGE_RS20395 9f177c0611571e915caf83913dc2f659 168 PANTHER PTHR21320:SF3 1 156 3.2E-31 T 26-04-2016 RGE_RS00160 b47398ff57988e4d22639108847900d7 157 Gene3D G3DSA:3.10.129.10 4 150 3.6E-44 T 26-04-2016 IPR029069 HotDog domain RGE_RS00160 b47398ff57988e4d22639108847900d7 157 SUPERFAMILY SSF54637 5 151 6.95E-38 T 26-04-2016 IPR029069 HotDog domain RGE_RS00160 b47398ff57988e4d22639108847900d7 157 PANTHER PTHR13078 7 156 1.8E-36 T 26-04-2016 RGE_RS00160 b47398ff57988e4d22639108847900d7 157 Pfam PF01575 MaoC like domain 14 113 4.9E-20 T 26-04-2016 IPR002539 MaoC-like domain RGE_RS16255 ba680cdf24b348e20b896fdaabc2dcc7 745 Gene3D G3DSA:3.30.565.10 620 738 2.4E-8 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16255 ba680cdf24b348e20b896fdaabc2dcc7 745 Pfam PF07730 Histidine kinase 557 585 9.7E-5 T 26-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RGE_RS16255 ba680cdf24b348e20b896fdaabc2dcc7 745 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 651 728 3.1E-5 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS16255 ba680cdf24b348e20b896fdaabc2dcc7 745 SUPERFAMILY SSF55874 623 736 2.88E-15 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS13840 f50b19f541f67d3818dc26045fb0995a 319 SUPERFAMILY SSF103481 195 296 3.53E-12 T 26-04-2016 RGE_RS13840 f50b19f541f67d3818dc26045fb0995a 319 PANTHER PTHR22911 1 297 1.8E-111 T 26-04-2016 RGE_RS13840 f50b19f541f67d3818dc26045fb0995a 319 Pfam PF00892 EamA-like transporter family 14 142 2.4E-14 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS13840 f50b19f541f67d3818dc26045fb0995a 319 Pfam PF00892 EamA-like transporter family 159 295 2.3E-17 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS13840 f50b19f541f67d3818dc26045fb0995a 319 PANTHER PTHR22911:SF63 1 297 1.8E-111 T 26-04-2016 RGE_RS13840 f50b19f541f67d3818dc26045fb0995a 319 SUPERFAMILY SSF103481 45 146 4.84E-13 T 26-04-2016 RGE_RS00450 472a233b9150f7b1bdbe265c012b1965 200 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 22 189 4.9E-14 T 26-04-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like RGE_RS00450 472a233b9150f7b1bdbe265c012b1965 200 SUPERFAMILY SSF51197 17 196 6.59E-30 T 26-04-2016 RGE_RS00450 472a233b9150f7b1bdbe265c012b1965 200 Gene3D G3DSA:2.60.120.590 19 198 5.1E-25 T 26-04-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like RGE_RS21690 69fba7a7b888a4f18ebab70779799383 116 Pfam PF04071 Cysteine-rich small domain 12 74 2.3E-15 T 26-04-2016 IPR007212 Cysteine-rich small domain RGE_RS14795 511aef44ed7644a1b364beb50f1bda04 151 SUPERFAMILY SSF52833 3 123 1.49E-16 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS14795 511aef44ed7644a1b364beb50f1bda04 151 Pfam PF13899 Thioredoxin-like 32 116 2.0E-15 T 26-04-2016 RGE_RS14795 511aef44ed7644a1b364beb50f1bda04 151 Gene3D G3DSA:3.40.30.10 24 144 1.1E-23 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 PANTHER PTHR33794:SF2 50 430 1.3E-144 T 26-04-2016 RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 51 93 6.2E-10 T 26-04-2016 IPR011096 FTP domain RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 338 514 5.8E-52 T 26-04-2016 IPR001570 Peptidase M4, C-terminal GO:0004222 RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 PANTHER PTHR33794 447 514 1.3E-144 T 26-04-2016 RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 PANTHER PTHR33794 50 430 1.3E-144 T 26-04-2016 RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 189 335 6.0E-46 T 26-04-2016 IPR013856 Peptidase M4 domain GO:0004222 RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 Gene3D G3DSA:1.10.390.10 340 514 1.4E-52 T 26-04-2016 RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 Gene3D G3DSA:3.10.170.10 187 339 3.5E-45 T 26-04-2016 IPR013856 Peptidase M4 domain GO:0004222 RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 SUPERFAMILY SSF55486 184 514 3.48E-81 T 26-04-2016 RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 PANTHER PTHR33794:SF2 447 514 1.3E-144 T 26-04-2016 RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 326 342 1.5E-19 T 26-04-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 347 358 1.5E-19 T 26-04-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 290 310 1.5E-19 T 26-04-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RGE_RS22570 8f9455ce11bcd0219e1ead214bd63278 515 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 413 429 1.5E-19 T 26-04-2016 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RGE_RS20230 62b2ddee8f587fe484ff7e14ba5b49e4 354 Pfam PF13579 Glycosyl transferase 4-like domain 17 170 7.3E-11 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS20230 62b2ddee8f587fe484ff7e14ba5b49e4 354 PANTHER PTHR12526 62 116 3.6E-15 T 26-04-2016 RGE_RS20230 62b2ddee8f587fe484ff7e14ba5b49e4 354 PANTHER PTHR12526 135 300 3.6E-15 T 26-04-2016 RGE_RS20230 62b2ddee8f587fe484ff7e14ba5b49e4 354 PANTHER PTHR12526 336 351 3.6E-15 T 26-04-2016 RGE_RS20230 62b2ddee8f587fe484ff7e14ba5b49e4 354 SUPERFAMILY SSF53756 18 306 8.52E-34 T 26-04-2016 RGE_RS20230 62b2ddee8f587fe484ff7e14ba5b49e4 354 Pfam PF00534 Glycosyl transferases group 1 182 305 8.9E-14 T 26-04-2016 IPR001296 Glycosyl transferase, family 1 RGE_RS20230 62b2ddee8f587fe484ff7e14ba5b49e4 354 Gene3D G3DSA:3.40.50.2000 194 332 1.3E-8 T 26-04-2016 RGE_RS20245 935bd41ccb7d9e12a44bc3083d2549cf 361 Gene3D G3DSA:3.40.640.10 13 243 5.1E-82 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS20245 935bd41ccb7d9e12a44bc3083d2549cf 361 PANTHER PTHR30244:SF13 1 361 7.4E-100 T 26-04-2016 RGE_RS20245 935bd41ccb7d9e12a44bc3083d2549cf 361 Gene3D G3DSA:3.90.1150.10 248 360 4.1E-33 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS20245 935bd41ccb7d9e12a44bc3083d2549cf 361 SUPERFAMILY SSF53383 13 360 3.36E-111 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS20245 935bd41ccb7d9e12a44bc3083d2549cf 361 PIRSF PIRSF000390 2 361 1.9E-104 T 26-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RGE_RS20245 935bd41ccb7d9e12a44bc3083d2549cf 361 PANTHER PTHR30244 1 361 7.4E-100 T 26-04-2016 RGE_RS20245 935bd41ccb7d9e12a44bc3083d2549cf 361 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 17 357 2.0E-122 T 26-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RGE_RS04065 68a77089611b45de185d9c17398c1fc5 269 SMART SM00382 32 251 1.4E-10 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS04065 68a77089611b45de185d9c17398c1fc5 269 Pfam PF00005 ABC transporter 23 172 6.3E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS04065 68a77089611b45de185d9c17398c1fc5 269 PANTHER PTHR24220 8 269 1.0E-129 T 26-04-2016 RGE_RS04065 68a77089611b45de185d9c17398c1fc5 269 Gene3D G3DSA:3.40.50.300 3 238 1.1E-67 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04065 68a77089611b45de185d9c17398c1fc5 269 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS04065 68a77089611b45de185d9c17398c1fc5 269 PANTHER PTHR24220:SF368 8 269 1.0E-129 T 26-04-2016 RGE_RS04065 68a77089611b45de185d9c17398c1fc5 269 SUPERFAMILY SSF52540 6 236 4.58E-61 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS03530 8ed09dd0a300e862011464395d00a3be 475 Gene3D G3DSA:1.20.210.10 8 456 9.1E-18 T 26-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS03530 8ed09dd0a300e862011464395d00a3be 475 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 202 258 - T 26-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS03530 8ed09dd0a300e862011464395d00a3be 475 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 14 442 1.1E-80 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS03530 8ed09dd0a300e862011464395d00a3be 475 SUPERFAMILY SSF81442 9 457 5.63E-87 T 26-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS03530 8ed09dd0a300e862011464395d00a3be 475 PANTHER PTHR10422:SF24 18 460 6.9E-104 T 26-04-2016 RGE_RS03530 8ed09dd0a300e862011464395d00a3be 475 PANTHER PTHR10422 18 460 6.9E-104 T 26-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RGE_RS02125 e7e8e30fa72d2ef51412c6f7a2a21357 316 Pfam PF00535 Glycosyl transferase family 2 9 116 6.7E-28 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS02125 e7e8e30fa72d2ef51412c6f7a2a21357 316 Gene3D G3DSA:3.90.550.10 6 233 9.9E-53 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS02125 e7e8e30fa72d2ef51412c6f7a2a21357 316 PANTHER PTHR22916 5 309 1.8E-50 T 26-04-2016 RGE_RS02125 e7e8e30fa72d2ef51412c6f7a2a21357 316 SUPERFAMILY SSF53448 6 227 1.78E-53 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS12675 cf5e717b41669752dd093fdd5ad41c65 134 Pfam PF07238 PilZ domain 27 110 3.4E-8 T 26-04-2016 IPR009875 PilZ domain GO:0035438 RGE_RS16555 bddf2d8792d3a69dd67c113e67c2ed96 288 PANTHER PTHR22572:SF14 5 284 7.3E-100 T 26-04-2016 RGE_RS16555 bddf2d8792d3a69dd67c113e67c2ed96 288 Gene3D G3DSA:3.90.550.10 4 274 1.3E-67 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS16555 bddf2d8792d3a69dd67c113e67c2ed96 288 Pfam PF00483 Nucleotidyl transferase 10 268 9.6E-27 T 26-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RGE_RS16555 bddf2d8792d3a69dd67c113e67c2ed96 288 PANTHER PTHR22572 5 284 7.3E-100 T 26-04-2016 RGE_RS16555 bddf2d8792d3a69dd67c113e67c2ed96 288 SUPERFAMILY SSF53448 4 276 2.09E-62 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS16555 bddf2d8792d3a69dd67c113e67c2ed96 288 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 3 264 5.4E-112 T 26-04-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 RGE_RS05140 6e744aab75b0ed730a19319de4d6edc0 256 PANTHER PTHR10266:SF3 37 170 4.0E-44 T 26-04-2016 RGE_RS05140 6e744aab75b0ed730a19319de4d6edc0 256 PANTHER PTHR10266:SF3 199 256 4.0E-44 T 26-04-2016 RGE_RS05140 6e744aab75b0ed730a19319de4d6edc0 256 Gene3D G3DSA:1.10.760.10 33 221 4.5E-64 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS05140 6e744aab75b0ed730a19319de4d6edc0 256 Pfam PF02167 Cytochrome C1 family 37 78 9.9E-9 T 26-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RGE_RS05140 6e744aab75b0ed730a19319de4d6edc0 256 Pfam PF02167 Cytochrome C1 family 105 254 7.2E-14 T 26-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RGE_RS05140 6e744aab75b0ed730a19319de4d6edc0 256 Gene3D G3DSA:1.20.5.100 225 256 3.6E-7 T 26-04-2016 RGE_RS05140 6e744aab75b0ed730a19319de4d6edc0 256 SUPERFAMILY SSF46626 197 220 1.86E-49 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS05140 6e744aab75b0ed730a19319de4d6edc0 256 SUPERFAMILY SSF46626 22 168 1.86E-49 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS05140 6e744aab75b0ed730a19319de4d6edc0 256 PANTHER PTHR10266 37 170 4.0E-44 T 26-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RGE_RS05140 6e744aab75b0ed730a19319de4d6edc0 256 PANTHER PTHR10266 199 256 4.0E-44 T 26-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RGE_RS16605 33208377736561b321e49a81a4695811 256 SUPERFAMILY SSF52540 4 251 6.16E-64 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16605 33208377736561b321e49a81a4695811 256 PANTHER PTHR24220:SF358 128 254 9.2E-109 T 26-04-2016 RGE_RS16605 33208377736561b321e49a81a4695811 256 PANTHER PTHR24220:SF358 7 112 9.2E-109 T 26-04-2016 RGE_RS16605 33208377736561b321e49a81a4695811 256 PANTHER PTHR24220 128 254 9.2E-109 T 26-04-2016 RGE_RS16605 33208377736561b321e49a81a4695811 256 PANTHER PTHR24220 7 112 9.2E-109 T 26-04-2016 RGE_RS16605 33208377736561b321e49a81a4695811 256 SMART SM00382 30 211 5.8E-7 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS16605 33208377736561b321e49a81a4695811 256 Pfam PF00005 ABC transporter 21 181 1.5E-28 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS16605 33208377736561b321e49a81a4695811 256 Gene3D G3DSA:3.40.50.300 2 250 3.6E-68 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS16605 33208377736561b321e49a81a4695811 256 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 232 252 2.3E-11 T 26-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RGE_RS16605 33208377736561b321e49a81a4695811 256 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS10470 09d2cdfde16ea78fd1f935069a997095 245 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 43 225 7.9E-55 T 26-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 RGE_RS10470 09d2cdfde16ea78fd1f935069a997095 245 PANTHER PTHR30098 1 245 3.9E-61 T 26-04-2016 RGE_RS10470 09d2cdfde16ea78fd1f935069a997095 245 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 39 212 1.9E-69 T 26-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 RGE_RS10470 09d2cdfde16ea78fd1f935069a997095 245 SUPERFAMILY SSF55729 3 228 1.27E-82 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS10470 09d2cdfde16ea78fd1f935069a997095 245 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 245 92.681 T 26-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 RGE_RS22235 0f6fbd7f04f1d2535384657cd8eddb79 354 Gene3D G3DSA:3.20.20.70 27 308 4.1E-46 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS22235 0f6fbd7f04f1d2535384657cd8eddb79 354 Pfam PF13353 4Fe-4S single cluster domain 35 140 2.0E-7 T 26-04-2016 RGE_RS22235 0f6fbd7f04f1d2535384657cd8eddb79 354 PANTHER PTHR11228 24 234 8.6E-36 T 26-04-2016 RGE_RS22235 0f6fbd7f04f1d2535384657cd8eddb79 354 Pfam PF04055 Radical SAM superfamily 34 171 1.7E-17 T 26-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RGE_RS22235 0f6fbd7f04f1d2535384657cd8eddb79 354 SUPERFAMILY SSF102114 30 306 4.45E-44 T 26-04-2016 RGE_RS22235 0f6fbd7f04f1d2535384657cd8eddb79 354 PANTHER PTHR11228:SF7 24 234 8.6E-36 T 26-04-2016 RGE_RS05850 b6f89a333eda1789192f4669327ee266 258 PANTHER PTHR10108:SF893 26 153 8.9E-68 T 26-04-2016 RGE_RS05850 b6f89a333eda1789192f4669327ee266 258 PANTHER PTHR10108:SF893 179 254 8.9E-68 T 26-04-2016 RGE_RS05850 b6f89a333eda1789192f4669327ee266 258 Gene3D G3DSA:3.40.50.150 15 250 2.1E-52 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS05850 b6f89a333eda1789192f4669327ee266 258 SUPERFAMILY SSF53335 10 249 5.31E-47 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS05850 b6f89a333eda1789192f4669327ee266 258 Pfam PF13847 Methyltransferase domain 40 162 2.7E-13 T 26-04-2016 IPR025714 Methyltransferase domain RGE_RS05850 b6f89a333eda1789192f4669327ee266 258 PANTHER PTHR10108 26 153 8.9E-68 T 26-04-2016 RGE_RS05850 b6f89a333eda1789192f4669327ee266 258 PANTHER PTHR10108 179 254 8.9E-68 T 26-04-2016 RGE_RS05850 b6f89a333eda1789192f4669327ee266 258 PIRSF PIRSF034653 6 255 1.7E-116 T 26-04-2016 IPR017031 Predicted S-adenosyl-L-methionine dependent methyltransferase, YjhP-type RGE_RS02210 760848960b8c8c07351d150e33f8c6e3 1052 Pfam PF04892 VanZ like family 54 129 2.4E-8 T 26-04-2016 IPR006976 VanZ-like RGE_RS17960 dadae29d6b17a7d3753a75251190964b 91 Pfam PF13937 Domain of unknown function (DUF4212) 14 86 1.6E-26 T 26-04-2016 IPR019886 Sodium symporter small subunit, predicted RGE_RS17960 dadae29d6b17a7d3753a75251190964b 91 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 17 86 2.0E-26 T 26-04-2016 IPR019886 Sodium symporter small subunit, predicted RGE_RS02940 c9f800d1fd3c2d2070cc3ef1265d234a 592 Gene3D G3DSA:1.20.1560.10 19 333 1.0E-32 T 26-04-2016 RGE_RS02940 c9f800d1fd3c2d2070cc3ef1265d234a 592 ProSitePatterns PS00211 ABC transporters family signature. 483 497 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS02940 c9f800d1fd3c2d2070cc3ef1265d234a 592 Pfam PF00005 ABC transporter 362 511 2.9E-30 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS02940 c9f800d1fd3c2d2070cc3ef1265d234a 592 PANTHER PTHR24222:SF25 13 587 3.1E-219 T 26-04-2016 RGE_RS02940 c9f800d1fd3c2d2070cc3ef1265d234a 592 PANTHER PTHR24222 13 587 3.1E-219 T 26-04-2016 RGE_RS02940 c9f800d1fd3c2d2070cc3ef1265d234a 592 Gene3D G3DSA:3.40.50.300 347 585 4.1E-76 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02940 c9f800d1fd3c2d2070cc3ef1265d234a 592 SUPERFAMILY SSF90123 18 333 5.89E-37 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS02940 c9f800d1fd3c2d2070cc3ef1265d234a 592 SUPERFAMILY SSF52540 339 581 1.33E-84 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS02940 c9f800d1fd3c2d2070cc3ef1265d234a 592 Pfam PF00664 ABC transporter transmembrane region 70 297 4.2E-7 T 26-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RGE_RS02940 c9f800d1fd3c2d2070cc3ef1265d234a 592 SMART SM00382 371 557 8.9E-17 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS21985 0f4999719a31ba5f781640a0475d66fa 325 PANTHER PTHR21535 29 325 1.1E-95 T 26-04-2016 RGE_RS21985 0f4999719a31ba5f781640a0475d66fa 325 Gene3D G3DSA:1.20.58.340 248 324 7.4E-28 T 26-04-2016 RGE_RS21985 0f4999719a31ba5f781640a0475d66fa 325 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 3 324 5.3E-67 T 26-04-2016 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 RGE_RS21985 0f4999719a31ba5f781640a0475d66fa 325 PANTHER PTHR21535:SF37 29 325 1.1E-95 T 26-04-2016 RGE_RS21985 0f4999719a31ba5f781640a0475d66fa 325 SUPERFAMILY SSF143865 1 263 6.28E-36 T 26-04-2016 RGE_RS21985 0f4999719a31ba5f781640a0475d66fa 325 Pfam PF01544 CorA-like Mg2+ transporter protein 28 320 3.7E-54 T 26-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RGE_RS21985 0f4999719a31ba5f781640a0475d66fa 325 SUPERFAMILY SSF144083 259 322 2.35E-20 T 26-04-2016 RGE_RS16760 1ef67470a89ba866bbc9d270417d8ddd 270 PANTHER PTHR30625:SF3 27 265 1.7E-42 T 26-04-2016 RGE_RS16760 1ef67470a89ba866bbc9d270417d8ddd 270 PANTHER PTHR30625 27 265 1.7E-42 T 26-04-2016 RGE_RS16760 1ef67470a89ba866bbc9d270417d8ddd 270 Pfam PF01618 MotA/TolQ/ExbB proton channel family 131 254 1.0E-33 T 26-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RGE_RS18125 7636f3f40dad1855b602bdc46ed30c13 110 PANTHER PTHR37310 10 110 5.2E-15 T 26-04-2016 RGE_RS18125 7636f3f40dad1855b602bdc46ed30c13 110 Pfam PF03860 Domain of Unknown Function (DUF326) 87 106 2.2E-6 T 26-04-2016 IPR005560 Protein of unknown function DUF326 RGE_RS22645 3daff73725aa48b2d41e906a5b1a65c7 119 PANTHER PTHR37309:SF1 1 118 2.2E-32 T 26-04-2016 RGE_RS22645 3daff73725aa48b2d41e906a5b1a65c7 119 PANTHER PTHR37309 1 118 2.2E-32 T 26-04-2016 RGE_RS22645 3daff73725aa48b2d41e906a5b1a65c7 119 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 1 105 1.2E-32 T 26-04-2016 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV RGE_RS15565 bb9f9be669af9d96e138ac7842b29e7a 209 Pfam PF01618 MotA/TolQ/ExbB proton channel family 67 191 3.5E-32 T 26-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RGE_RS15565 bb9f9be669af9d96e138ac7842b29e7a 209 PANTHER PTHR30625 1 209 7.3E-39 T 26-04-2016 RGE_RS03915 2842bfdc698c97f9dfd1f65525d251f4 412 SUPERFAMILY SSF53067 33 147 5.96E-18 T 26-04-2016 RGE_RS03915 2842bfdc698c97f9dfd1f65525d251f4 412 Pfam PF12693 GspL periplasmic domain 264 398 4.8E-16 T 26-04-2016 IPR025691 GspL periplasmic domain RGE_RS03915 2842bfdc698c97f9dfd1f65525d251f4 412 Pfam PF05134 Type II secretion system (T2SS), protein L 51 245 3.4E-13 T 26-04-2016 IPR024230 GspL, cytoplasmic actin-ATPase-like domain RGE_RS07870 d0adc6dc89d6a2e07305bc6fa62b22a4 558 PANTHER PTHR10617 12 481 3.7E-237 T 26-04-2016 RGE_RS07870 d0adc6dc89d6a2e07305bc6fa62b22a4 558 SUPERFAMILY SSF54862 458 556 6.78E-27 T 26-04-2016 RGE_RS07870 d0adc6dc89d6a2e07305bc6fa62b22a4 558 SUPERFAMILY SSF54373 217 312 3.41E-37 T 26-04-2016 RGE_RS07870 d0adc6dc89d6a2e07305bc6fa62b22a4 558 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 454 555 2.8E-50 T 26-04-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 RGE_RS07870 d0adc6dc89d6a2e07305bc6fa62b22a4 558 Gene3D G3DSA:3.50.50.60 16 288 4.8E-48 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS07870 d0adc6dc89d6a2e07305bc6fa62b22a4 558 PANTHER PTHR10617:SF107 12 481 3.7E-237 T 26-04-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 RGE_RS07870 d0adc6dc89d6a2e07305bc6fa62b22a4 558 SUPERFAMILY SSF51905 313 456 6.95E-54 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS07870 d0adc6dc89d6a2e07305bc6fa62b22a4 558 SUPERFAMILY SSF51905 14 216 6.95E-54 T 26-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RGE_RS07870 d0adc6dc89d6a2e07305bc6fa62b22a4 558 Pfam PF13450 NAD(P)-binding Rossmann-like domain 22 63 1.5E-7 T 26-04-2016 RGE_RS22125 b9fc6af68108d726bdc4cd74f7612dd1 144 Pfam PF01337 Barstar (barnase inhibitor) 49 132 1.6E-25 T 26-04-2016 IPR000468 Barstar (barnase inhibitor) RGE_RS22125 b9fc6af68108d726bdc4cd74f7612dd1 144 SUPERFAMILY SSF52038 45 137 1.44E-23 T 26-04-2016 IPR000468 Barstar (barnase inhibitor) RGE_RS22125 b9fc6af68108d726bdc4cd74f7612dd1 144 Gene3D G3DSA:3.30.370.10 44 137 1.8E-30 T 26-04-2016 IPR000468 Barstar (barnase inhibitor) RGE_RS00850 c060ccc3c7e6a57e73de7a00fe5d764e 398 PANTHER PTHR11879 1 398 3.8E-205 T 26-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RGE_RS00850 c060ccc3c7e6a57e73de7a00fe5d764e 398 Gene3D G3DSA:3.90.1150.10 305 398 4.5E-20 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS00850 c060ccc3c7e6a57e73de7a00fe5d764e 398 PRINTS PR00799 Aspartate aminotransferase signature 343 361 2.2E-34 T 26-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RGE_RS00850 c060ccc3c7e6a57e73de7a00fe5d764e 398 PRINTS PR00799 Aspartate aminotransferase signature 177 196 2.2E-34 T 26-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RGE_RS00850 c060ccc3c7e6a57e73de7a00fe5d764e 398 PRINTS PR00799 Aspartate aminotransferase signature 208 220 2.2E-34 T 26-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RGE_RS00850 c060ccc3c7e6a57e73de7a00fe5d764e 398 PRINTS PR00799 Aspartate aminotransferase signature 275 300 2.2E-34 T 26-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RGE_RS00850 c060ccc3c7e6a57e73de7a00fe5d764e 398 Pfam PF00155 Aminotransferase class I and II 30 394 1.9E-76 T 26-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RGE_RS00850 c060ccc3c7e6a57e73de7a00fe5d764e 398 SUPERFAMILY SSF53383 1 397 2.18E-116 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS00850 c060ccc3c7e6a57e73de7a00fe5d764e 398 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 245 258 - T 26-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RGE_RS00850 c060ccc3c7e6a57e73de7a00fe5d764e 398 PANTHER PTHR11879:SF7 1 398 3.8E-205 T 26-04-2016 RGE_RS00850 c060ccc3c7e6a57e73de7a00fe5d764e 398 Gene3D G3DSA:3.40.640.10 47 304 2.4E-101 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS00590 60be01508d91b5aef27367696f323b6d 429 PANTHER PTHR11119:SF49 1 422 1.6E-176 T 26-04-2016 RGE_RS00590 60be01508d91b5aef27367696f323b6d 429 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 23 419 1.1E-107 T 26-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 RGE_RS00590 60be01508d91b5aef27367696f323b6d 429 Pfam PF00860 Permease family 28 397 9.3E-92 T 26-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 RGE_RS00590 60be01508d91b5aef27367696f323b6d 429 PANTHER PTHR11119 1 422 1.6E-176 T 26-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 RGE_RS00590 60be01508d91b5aef27367696f323b6d 429 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 345 365 - T 26-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 RGE_RS02520 5478d406f1ba68f6981510b50c713f09 284 PIRSF PIRSF026649 1 284 1.8E-65 T 26-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RGE_RS02520 5478d406f1ba68f6981510b50c713f09 284 PANTHER PTHR30606 13 282 7.3E-44 T 26-04-2016 RGE_RS02520 5478d406f1ba68f6981510b50c713f09 284 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 7 276 1.9E-33 T 26-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RGE_RS14320 f850b5968d299acb303dfbcf72a16901 163 Gene3D G3DSA:3.30.530.20 10 162 1.9E-52 T 26-04-2016 IPR023393 START-like domain RGE_RS14320 f850b5968d299acb303dfbcf72a16901 163 PANTHER PTHR36929 4 159 1.1E-32 T 26-04-2016 RGE_RS14320 f850b5968d299acb303dfbcf72a16901 163 SUPERFAMILY SSF55961 13 162 1.65E-48 T 26-04-2016 RGE_RS14320 f850b5968d299acb303dfbcf72a16901 163 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 25 160 7.4E-33 T 26-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 RGE_RS14320 f850b5968d299acb303dfbcf72a16901 163 PANTHER PTHR36929:SF1 4 159 1.1E-32 T 26-04-2016 RGE_RS10890 16defdf43430b2e4af8f1e340a517fca 82 SUPERFAMILY SSF51182 9 80 1.5E-13 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS10890 16defdf43430b2e4af8f1e340a517fca 82 Gene3D G3DSA:2.60.120.10 9 76 2.2E-9 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS17835 810877e6276d80caae55bfa64ae9b3e1 374 Gene3D G3DSA:3.30.565.10 239 324 6.5E-8 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17835 810877e6276d80caae55bfa64ae9b3e1 374 SUPERFAMILY SSF55874 241 350 1.17E-9 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS17835 810877e6276d80caae55bfa64ae9b3e1 374 PANTHER PTHR34220 134 374 1.7E-56 T 26-04-2016 RGE_RS17835 810877e6276d80caae55bfa64ae9b3e1 374 Pfam PF06580 Histidine kinase 188 265 1.4E-21 T 26-04-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 RGE_RS00585 62a3ff96710782e0ab00bb682c36d8e0 316 SUPERFAMILY SSF110997 241 303 1.01E-11 T 26-04-2016 IPR007730 Sporulation-related domain GO:0042834 RGE_RS00585 62a3ff96710782e0ab00bb682c36d8e0 316 Gene3D G3DSA:3.30.70.1070 239 304 2.8E-13 T 26-04-2016 IPR007730 Sporulation-related domain GO:0042834 RGE_RS00585 62a3ff96710782e0ab00bb682c36d8e0 316 PANTHER PTHR34183:SF3 80 315 4.0E-89 T 26-04-2016 RGE_RS00585 62a3ff96710782e0ab00bb682c36d8e0 316 Pfam PF03330 Lytic transglycolase 82 170 9.6E-24 T 26-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RGE_RS00585 62a3ff96710782e0ab00bb682c36d8e0 316 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 84 173 5.6E-38 T 26-04-2016 IPR012997 Rare lipoprotein A RGE_RS00585 62a3ff96710782e0ab00bb682c36d8e0 316 Pfam PF05036 Sporulation related domain 240 303 8.7E-14 T 26-04-2016 IPR007730 Sporulation-related domain GO:0042834 RGE_RS00585 62a3ff96710782e0ab00bb682c36d8e0 316 SUPERFAMILY SSF50685 81 172 6.63E-8 T 26-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RGE_RS00585 62a3ff96710782e0ab00bb682c36d8e0 316 PANTHER PTHR34183 80 315 4.0E-89 T 26-04-2016 RGE_RS18810 e9bc824da43aceedc809bd120bf68fd2 156 Gene3D G3DSA:3.40.1280.10 2 155 3.2E-47 T 26-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RGE_RS18810 e9bc824da43aceedc809bd120bf68fd2 156 SUPERFAMILY SSF75217 2 154 1.05E-41 T 26-04-2016 IPR029028 Alpha/beta knot methyltransferases RGE_RS18810 e9bc824da43aceedc809bd120bf68fd2 156 PIRSF PIRSF004505 1 155 1.9E-38 T 26-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS18810 e9bc824da43aceedc809bd120bf68fd2 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 25.272 T 26-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS18810 e9bc824da43aceedc809bd120bf68fd2 156 PANTHER PTHR33603 1 155 1.5E-46 T 26-04-2016 RGE_RS18810 e9bc824da43aceedc809bd120bf68fd2 156 PANTHER PTHR33603:SF1 1 155 1.5E-46 T 26-04-2016 RGE_RS18810 e9bc824da43aceedc809bd120bf68fd2 156 Pfam PF02590 Predicted SPOUT methyltransferase 2 154 3.3E-41 T 26-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RGE_RS02075 cdc014b28de6f89181db83f857f7c63f 462 PANTHER PTHR36932 3 458 5.2E-63 T 26-04-2016 RGE_RS02075 cdc014b28de6f89181db83f857f7c63f 462 Pfam PF00501 AMP-binding enzyme 197 312 2.6E-8 T 26-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RGE_RS02075 cdc014b28de6f89181db83f857f7c63f 462 SUPERFAMILY SSF56801 46 426 6.67E-25 T 26-04-2016 RGE_RS02075 cdc014b28de6f89181db83f857f7c63f 462 Gene3D G3DSA:3.40.50.980 193 267 2.9E-5 T 26-04-2016 RGE_RS02075 cdc014b28de6f89181db83f857f7c63f 462 PANTHER PTHR36932:SF2 3 458 5.2E-63 T 26-04-2016 RGE_RS07520 835d29c83b764b1078f023240648064a 270 PANTHER PTHR30269:SF18 5 264 2.9E-62 T 26-04-2016 RGE_RS07520 835d29c83b764b1078f023240648064a 270 PANTHER PTHR30269 5 264 2.9E-62 T 26-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RGE_RS07520 835d29c83b764b1078f023240648064a 270 Pfam PF01925 Sulfite exporter TauE/SafE 11 264 2.2E-49 T 26-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RGE_RS08270 17572d93d68100f83abb7f2058cfd0ac 554 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 30 550 8.2E-118 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS08270 17572d93d68100f83abb7f2058cfd0ac 554 PRINTS PR01009 Flagellar M-ring protein signature 160 174 1.2E-30 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS08270 17572d93d68100f83abb7f2058cfd0ac 554 PRINTS PR01009 Flagellar M-ring protein signature 203 221 1.2E-30 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS08270 17572d93d68100f83abb7f2058cfd0ac 554 PRINTS PR01009 Flagellar M-ring protein signature 272 290 1.2E-30 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS08270 17572d93d68100f83abb7f2058cfd0ac 554 PRINTS PR01009 Flagellar M-ring protein signature 360 384 1.2E-30 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS08270 17572d93d68100f83abb7f2058cfd0ac 554 PRINTS PR01009 Flagellar M-ring protein signature 128 146 1.2E-30 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS08270 17572d93d68100f83abb7f2058cfd0ac 554 PIRSF PIRSF004862 20 554 5.5E-140 T 26-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RGE_RS08270 17572d93d68100f83abb7f2058cfd0ac 554 Pfam PF08345 Flagellar M-ring protein C-terminal 259 436 4.0E-44 T 26-04-2016 IPR013556 Flagellar M-ring C-terminal RGE_RS08270 17572d93d68100f83abb7f2058cfd0ac 554 PANTHER PTHR30046:SF0 7 554 3.5E-155 T 26-04-2016 RGE_RS08270 17572d93d68100f83abb7f2058cfd0ac 554 Pfam PF01514 Secretory protein of YscJ/FliF family 38 227 1.8E-69 T 26-04-2016 IPR006182 Secretory protein YscJ/FliF RGE_RS08270 17572d93d68100f83abb7f2058cfd0ac 554 PANTHER PTHR30046 7 554 3.5E-155 T 26-04-2016 RGE_RS10430 fcddff6c4af128dcf1ee121003fde635 142 Pfam PF03061 Thioesterase superfamily 51 125 9.3E-12 T 26-04-2016 IPR006683 Thioesterase domain RGE_RS10430 fcddff6c4af128dcf1ee121003fde635 142 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 23 136 9.7E-18 T 26-04-2016 IPR003736 Phenylacetic acid degradation-related domain RGE_RS10430 fcddff6c4af128dcf1ee121003fde635 142 PANTHER PTHR12418:SF12 25 142 3.2E-44 T 26-04-2016 RGE_RS10430 fcddff6c4af128dcf1ee121003fde635 142 Gene3D G3DSA:3.10.129.10 10 140 4.1E-33 T 26-04-2016 IPR029069 HotDog domain RGE_RS10430 fcddff6c4af128dcf1ee121003fde635 142 SUPERFAMILY SSF54637 22 139 3.37E-24 T 26-04-2016 IPR029069 HotDog domain RGE_RS10430 fcddff6c4af128dcf1ee121003fde635 142 PANTHER PTHR12418 25 142 3.2E-44 T 26-04-2016 RGE_RS13900 49552dfb5b4878df2f5406a74124e5d0 169 SUPERFAMILY SSF50475 15 138 3.51E-19 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS13900 49552dfb5b4878df2f5406a74124e5d0 169 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 12 151 2.3E-28 T 26-04-2016 RGE_RS13900 49552dfb5b4878df2f5406a74124e5d0 169 Gene3D G3DSA:2.30.110.10 10 162 1.7E-34 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS13900 49552dfb5b4878df2f5406a74124e5d0 169 PANTHER PTHR34818 14 163 1.2E-17 T 26-04-2016 RGE_RS07400 a9c9b0da6efd0599d319a08234b2cda5 341 SUPERFAMILY SSF81345 11 337 6.67E-69 T 26-04-2016 IPR029022 ABC transporter, BtuC-like RGE_RS07400 a9c9b0da6efd0599d319a08234b2cda5 341 PANTHER PTHR30472 1 341 1.2E-79 T 26-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RGE_RS07400 a9c9b0da6efd0599d319a08234b2cda5 341 Pfam PF01032 FecCD transport family 26 337 1.5E-74 T 26-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RGE_RS07400 a9c9b0da6efd0599d319a08234b2cda5 341 Gene3D G3DSA:1.10.3470.10 11 339 7.0E-84 T 26-04-2016 IPR029022 ABC transporter, BtuC-like RGE_RS14355 5252574862dc28932ae8c29329fcf9c8 390 SUPERFAMILY SSF54862 32 82 2.76E-6 T 26-04-2016 RGE_RS14355 5252574862dc28932ae8c29329fcf9c8 390 TIGRFAM TIGR02484 CitB: CitB domain protein 24 381 6.8E-115 T 26-04-2016 IPR012830 Citrate utilization protein B RGE_RS14355 5252574862dc28932ae8c29329fcf9c8 390 Gene3D G3DSA:3.30.70.20 26 81 5.5E-6 T 26-04-2016 RGE_RS14355 5252574862dc28932ae8c29329fcf9c8 390 SUPERFAMILY SSF103501 220 381 3.14E-28 T 26-04-2016 IPR023234 NarG-like domain RGE_RS14355 5252574862dc28932ae8c29329fcf9c8 390 SUPERFAMILY SSF103501 166 193 3.14E-28 T 26-04-2016 IPR023234 NarG-like domain RGE_RS04590 5a1402f8e945593ebe8710d3210c4e26 244 Gene3D G3DSA:3.40.50.300 1 231 2.5E-76 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04590 5a1402f8e945593ebe8710d3210c4e26 244 SUPERFAMILY SSF52540 1 230 1.3E-74 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04590 5a1402f8e945593ebe8710d3210c4e26 244 SMART SM00382 26 213 6.8E-14 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS04590 5a1402f8e945593ebe8710d3210c4e26 244 PIRSF PIRSF039085 1 243 3.5E-100 T 26-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RGE_RS04590 5a1402f8e945593ebe8710d3210c4e26 244 PANTHER PTHR24220 3 244 1.9E-173 T 26-04-2016 RGE_RS04590 5a1402f8e945593ebe8710d3210c4e26 244 PANTHER PTHR24220:SF317 3 244 1.9E-173 T 26-04-2016 IPR030206 Glutamate/aspartate transport ATP-binding protein GltL/AatP GO:0005524|GO:0006865|GO:0043190 RGE_RS04590 5a1402f8e945593ebe8710d3210c4e26 244 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS04590 5a1402f8e945593ebe8710d3210c4e26 244 Pfam PF00005 ABC transporter 18 165 5.6E-33 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS20355 424992cf0dcd20c256db500b4c0669fe 203 PANTHER PTHR12151:SF0 40 200 1.8E-51 T 26-04-2016 RGE_RS20355 424992cf0dcd20c256db500b4c0669fe 203 Pfam PF02630 SCO1/SenC 45 177 6.4E-39 T 26-04-2016 IPR003782 Copper chaperone SCO1/SenC RGE_RS20355 424992cf0dcd20c256db500b4c0669fe 203 Gene3D G3DSA:3.40.30.10 10 200 1.5E-56 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20355 424992cf0dcd20c256db500b4c0669fe 203 PANTHER PTHR12151 40 200 1.8E-51 T 26-04-2016 IPR003782 Copper chaperone SCO1/SenC RGE_RS20355 424992cf0dcd20c256db500b4c0669fe 203 SUPERFAMILY SSF52833 42 200 1.95E-49 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS21515 46d6daf53e406cd6f7eb5326db157119 221 Gene3D G3DSA:3.90.1550.10 4 218 3.0E-62 T 26-04-2016 RGE_RS21515 46d6daf53e406cd6f7eb5326db157119 221 Hamap MF_00013 Octanoyltransferase [lipB]. 1 221 34.169 T 26-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RGE_RS21515 46d6daf53e406cd6f7eb5326db157119 221 PIRSF PIRSF016262 1 220 6.1E-51 T 26-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RGE_RS21515 46d6daf53e406cd6f7eb5326db157119 221 Pfam PF03099 Biotin/lipoate A/B protein ligase family 56 127 5.0E-7 T 26-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RGE_RS21515 46d6daf53e406cd6f7eb5326db157119 221 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 70 123 1.0E-17 T 26-04-2016 RGE_RS21515 46d6daf53e406cd6f7eb5326db157119 221 PANTHER PTHR10993 1 128 9.1E-59 T 26-04-2016 RGE_RS21515 46d6daf53e406cd6f7eb5326db157119 221 PANTHER PTHR10993 146 218 9.1E-59 T 26-04-2016 RGE_RS21515 46d6daf53e406cd6f7eb5326db157119 221 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 22 127 1.4E-31 T 26-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RGE_RS21515 46d6daf53e406cd6f7eb5326db157119 221 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 66 81 - T 26-04-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RGE_RS21515 46d6daf53e406cd6f7eb5326db157119 221 SUPERFAMILY SSF55681 2 218 1.49E-59 T 26-04-2016 RGE_RS04045 2c8252221ec5280c8796710bfb31f8f2 383 Pfam PF01966 HD domain 66 201 6.0E-17 T 26-04-2016 IPR006674 HD domain RGE_RS04045 2c8252221ec5280c8796710bfb31f8f2 383 SMART SM00471 62 211 6.3E-13 T 26-04-2016 IPR003607 HD/PDEase domain RGE_RS04045 2c8252221ec5280c8796710bfb31f8f2 383 PANTHER PTHR11373 6 159 1.0E-81 T 26-04-2016 RGE_RS04045 2c8252221ec5280c8796710bfb31f8f2 383 Gene3D G3DSA:1.10.3210.10 280 378 1.7E-81 T 26-04-2016 IPR006674 HD domain RGE_RS04045 2c8252221ec5280c8796710bfb31f8f2 383 Gene3D G3DSA:1.10.3210.10 26 220 1.7E-81 T 26-04-2016 IPR006674 HD domain RGE_RS04045 2c8252221ec5280c8796710bfb31f8f2 383 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 29 377 6.7E-87 T 26-04-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 RGE_RS04045 2c8252221ec5280c8796710bfb31f8f2 383 Pfam PF13286 Phosphohydrolase-associated domain 291 374 8.3E-26 T 26-04-2016 IPR026875 Phosphohydrolase-associated domain RGE_RS04045 2c8252221ec5280c8796710bfb31f8f2 383 SUPERFAMILY SSF109604 17 377 3.53E-86 T 26-04-2016 RGE_RS04045 2c8252221ec5280c8796710bfb31f8f2 383 PANTHER PTHR11373:SF25 6 159 1.0E-81 T 26-04-2016 RGE_RS04045 2c8252221ec5280c8796710bfb31f8f2 383 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 6 376 37.271 T 26-04-2016 IPR023023 Deoxyguanosinetriphosphate triphosphohydrolase, type 2 RGE_RS17055 3fdbe70bf8e9fe13cd526542b0dcde4e 489 Gene3D G3DSA:3.40.309.10 274 457 6.0E-71 T 26-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RGE_RS17055 3fdbe70bf8e9fe13cd526542b0dcde4e 489 Gene3D G3DSA:3.40.605.10 16 273 8.9E-103 T 26-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RGE_RS17055 3fdbe70bf8e9fe13cd526542b0dcde4e 489 PANTHER PTHR11699:SF49 1 484 1.9E-283 T 26-04-2016 RGE_RS17055 3fdbe70bf8e9fe13cd526542b0dcde4e 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 288 299 - T 26-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RGE_RS17055 3fdbe70bf8e9fe13cd526542b0dcde4e 489 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 33 480 4.4E-213 T 26-04-2016 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 UniPathway: UPA00733 RGE_RS17055 3fdbe70bf8e9fe13cd526542b0dcde4e 489 SUPERFAMILY SSF53720 11 485 1.17E-171 T 26-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RGE_RS17055 3fdbe70bf8e9fe13cd526542b0dcde4e 489 PANTHER PTHR11699 1 484 1.9E-283 T 26-04-2016 RGE_RS17055 3fdbe70bf8e9fe13cd526542b0dcde4e 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 260 267 - T 26-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RGE_RS17055 3fdbe70bf8e9fe13cd526542b0dcde4e 489 Pfam PF00171 Aldehyde dehydrogenase family 24 482 1.2E-168 T 26-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RGE_RS02540 86b67add122eaecabf1e6540dcc80323 312 Pfam PF00589 Phage integrase family 114 291 3.4E-39 T 26-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS02540 86b67add122eaecabf1e6540dcc80323 312 Gene3D G3DSA:1.10.443.10 113 299 1.2E-50 T 26-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RGE_RS02540 86b67add122eaecabf1e6540dcc80323 312 PANTHER PTHR30349 1 308 8.1E-102 T 26-04-2016 RGE_RS02540 86b67add122eaecabf1e6540dcc80323 312 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 91 4.6E-15 T 26-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RGE_RS02540 86b67add122eaecabf1e6540dcc80323 312 PANTHER PTHR30349:SF17 1 308 8.1E-102 T 26-04-2016 RGE_RS02540 86b67add122eaecabf1e6540dcc80323 312 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 5 305 32.794 T 26-04-2016 IPR023009 Tyrosine recombinase XerC/XerD RGE_RS02540 86b67add122eaecabf1e6540dcc80323 312 SUPERFAMILY SSF56349 4 298 3.53E-52 T 26-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RGE_RS02540 86b67add122eaecabf1e6540dcc80323 312 Gene3D G3DSA:1.10.150.130 6 100 1.4E-24 T 26-04-2016 IPR023109 Integrase/recombinase, N-terminal RGE_RS07675 6cd0ceeaa276bb5031ea0046b0bfe92e 161 PANTHER PTHR10371 3 159 4.9E-54 T 26-04-2016 RGE_RS07675 6cd0ceeaa276bb5031ea0046b0bfe92e 161 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 13 157 4.1E-53 T 26-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RGE_RS07675 6cd0ceeaa276bb5031ea0046b0bfe92e 161 SUPERFAMILY SSF52833 3 159 1.12E-48 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS07675 6cd0ceeaa276bb5031ea0046b0bfe92e 161 PIRSF PIRSF000216 1 161 1.4E-55 T 26-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RGE_RS07675 6cd0ceeaa276bb5031ea0046b0bfe92e 161 Gene3D G3DSA:3.40.30.10 77 157 1.1E-6 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS07675 6cd0ceeaa276bb5031ea0046b0bfe92e 161 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 15 157 9.0E-48 T 26-04-2016 RGE_RS07675 6cd0ceeaa276bb5031ea0046b0bfe92e 161 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 114 132 - T 26-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RGE_RS23075 6a12c05c2e2b7f2f6d105514b1276684 354 Pfam PF04230 Polysaccharide pyruvyl transferase 13 290 2.5E-21 T 26-04-2016 IPR007345 Polysaccharide pyruvyl transferase RGE_RS16480 c15f2984be8c93394d2bb51933853e24 296 SUPERFAMILY SSF53474 57 293 7.87E-48 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS16480 c15f2984be8c93394d2bb51933853e24 296 Pfam PF01738 Dienelactone hydrolase family 68 293 7.8E-64 T 26-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 RGE_RS16480 c15f2984be8c93394d2bb51933853e24 296 PANTHER PTHR17630:SF42 41 293 8.3E-95 T 26-04-2016 RGE_RS16480 c15f2984be8c93394d2bb51933853e24 296 PANTHER PTHR17630 41 293 8.3E-95 T 26-04-2016 RGE_RS16480 c15f2984be8c93394d2bb51933853e24 296 Gene3D G3DSA:3.40.50.1820 58 293 5.4E-63 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS02900 b6087489be0f5fc99798370efe68da20 126 PANTHER PTHR33202 3 121 1.2E-26 T 26-04-2016 RGE_RS02900 b6087489be0f5fc99798370efe68da20 126 SUPERFAMILY SSF46785 3 120 1.88E-30 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02900 b6087489be0f5fc99798370efe68da20 126 Gene3D G3DSA:1.10.10.10 3 69 5.3E-16 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02900 b6087489be0f5fc99798370efe68da20 126 Pfam PF01475 Ferric uptake regulator family 3 115 8.9E-21 T 26-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RGE_RS02900 b6087489be0f5fc99798370efe68da20 126 PANTHER PTHR33202:SF7 3 121 1.2E-26 T 26-04-2016 RGE_RS06565 5939b1b4dbcdce077b49b2c142e9ac9a 226 SMART SM00382 39 172 7.7E-4 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS06565 5939b1b4dbcdce077b49b2c142e9ac9a 226 SUPERFAMILY SSF52540 17 205 2.78E-20 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06565 5939b1b4dbcdce077b49b2c142e9ac9a 226 Gene3D G3DSA:3.40.50.300 1 152 3.4E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06565 5939b1b4dbcdce077b49b2c142e9ac9a 226 Pfam PF13191 AAA ATPase domain 20 203 6.7E-8 T 26-04-2016 RGE_RS06565 5939b1b4dbcdce077b49b2c142e9ac9a 226 PANTHER PTHR30050 1 222 1.6E-35 T 26-04-2016 RGE_RS06565 5939b1b4dbcdce077b49b2c142e9ac9a 226 PANTHER PTHR30050:SF5 1 222 1.6E-35 T 26-04-2016 RGE_RS06565 5939b1b4dbcdce077b49b2c142e9ac9a 226 Gene3D G3DSA:1.10.8.60 156 219 8.9E-23 T 26-04-2016 RGE_RS01105 9f34a0273b3459e72f8e08244aa3d790 176 PRINTS PR00125 ATP synthase delta subunit signature 73 84 1.4E-23 T 26-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RGE_RS01105 9f34a0273b3459e72f8e08244aa3d790 176 PRINTS PR00125 ATP synthase delta subunit signature 134 149 1.4E-23 T 26-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RGE_RS01105 9f34a0273b3459e72f8e08244aa3d790 176 PRINTS PR00125 ATP synthase delta subunit signature 149 167 1.4E-23 T 26-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RGE_RS01105 9f34a0273b3459e72f8e08244aa3d790 176 PRINTS PR00125 ATP synthase delta subunit signature 84 98 1.4E-23 T 26-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RGE_RS01105 9f34a0273b3459e72f8e08244aa3d790 176 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.4E-23 T 26-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RGE_RS01105 9f34a0273b3459e72f8e08244aa3d790 176 PANTHER PTHR11910 7 174 1.9E-39 T 26-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RGE_RS01105 9f34a0273b3459e72f8e08244aa3d790 176 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 174 6.0E-39 T 26-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RGE_RS01105 9f34a0273b3459e72f8e08244aa3d790 176 Gene3D G3DSA:1.10.520.20 2 102 7.2E-23 T 26-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RGE_RS01105 9f34a0273b3459e72f8e08244aa3d790 176 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 176 18.673 T 26-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RGE_RS01105 9f34a0273b3459e72f8e08244aa3d790 176 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 174 1.9E-46 T 26-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RGE_RS01105 9f34a0273b3459e72f8e08244aa3d790 176 SUPERFAMILY SSF47928 3 104 1.57E-19 T 26-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RGE_RS07985 cb11dd62409b3ded26202da1c362a675 187 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 181 6.4E-49 T 26-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RGE_RS07985 cb11dd62409b3ded26202da1c362a675 187 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 51 73 - T 26-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RGE_RS07985 cb11dd62409b3ded26202da1c362a675 187 Pfam PF01066 CDP-alcohol phosphatidyltransferase 5 73 1.0E-15 T 26-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RGE_RS07985 cb11dd62409b3ded26202da1c362a675 187 PANTHER PTHR14269:SF13 3 182 7.3E-59 T 26-04-2016 RGE_RS07985 cb11dd62409b3ded26202da1c362a675 187 PANTHER PTHR14269 3 182 7.3E-59 T 26-04-2016 RGE_RS07985 cb11dd62409b3ded26202da1c362a675 187 PIRSF PIRSF000847 1 187 5.9E-43 T 26-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RGE_RS02130 9a8459bf344bb9f05b4d8763d09a2294 261 PANTHER PTHR34216 20 259 1.4E-51 T 26-04-2016 RGE_RS02130 9a8459bf344bb9f05b4d8763d09a2294 261 Pfam PF01522 Polysaccharide deacetylase 69 201 1.9E-27 T 26-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RGE_RS02130 9a8459bf344bb9f05b4d8763d09a2294 261 SUPERFAMILY SSF88713 35 250 1.93E-37 T 26-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RGE_RS02130 9a8459bf344bb9f05b4d8763d09a2294 261 Gene3D G3DSA:3.20.20.370 62 202 6.4E-30 T 26-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RGE_RS19780 e1e7dd09f79cf1089cadf861861f90a1 320 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 40 48 1.5E-9 T 26-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RGE_RS19780 e1e7dd09f79cf1089cadf861861f90a1 320 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 109 123 1.5E-9 T 26-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RGE_RS19780 e1e7dd09f79cf1089cadf861861f90a1 320 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 66 77 1.5E-9 T 26-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RGE_RS19780 e1e7dd09f79cf1089cadf861861f90a1 320 Pfam PF00561 alpha/beta hydrolase fold 41 293 1.9E-26 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS19780 e1e7dd09f79cf1089cadf861861f90a1 320 PANTHER PTHR10992:SF757 208 294 4.5E-45 T 26-04-2016 RGE_RS19780 e1e7dd09f79cf1089cadf861861f90a1 320 PANTHER PTHR10992:SF757 3 151 4.5E-45 T 26-04-2016 RGE_RS19780 e1e7dd09f79cf1089cadf861861f90a1 320 PANTHER PTHR10992:SF757 168 186 4.5E-45 T 26-04-2016 RGE_RS19780 e1e7dd09f79cf1089cadf861861f90a1 320 Gene3D G3DSA:3.40.50.1820 18 296 2.9E-47 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS19780 e1e7dd09f79cf1089cadf861861f90a1 320 PANTHER PTHR10992 208 294 4.5E-45 T 26-04-2016 RGE_RS19780 e1e7dd09f79cf1089cadf861861f90a1 320 PANTHER PTHR10992 3 151 4.5E-45 T 26-04-2016 RGE_RS19780 e1e7dd09f79cf1089cadf861861f90a1 320 PANTHER PTHR10992 168 186 4.5E-45 T 26-04-2016 RGE_RS19780 e1e7dd09f79cf1089cadf861861f90a1 320 SUPERFAMILY SSF53474 6 296 1.89E-48 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12510 4db59c49d4092bb5ca35a7090fd12410 615 PANTHER PTHR35370:SF1 2 615 2.0E-130 T 26-04-2016 RGE_RS12510 4db59c49d4092bb5ca35a7090fd12410 615 PIRSF PIRSF028304 1 614 1.2E-175 T 26-04-2016 IPR010272 Type VI secretion system, TssF-like RGE_RS12510 4db59c49d4092bb5ca35a7090fd12410 615 Pfam PF05947 Type VI secretion system, ImpG, VasA, VC_A0110 5 613 4.9E-196 T 26-04-2016 IPR010272 Type VI secretion system, TssF-like RGE_RS12510 4db59c49d4092bb5ca35a7090fd12410 615 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 4 615 3.9E-199 T 26-04-2016 IPR010272 Type VI secretion system, TssF-like RGE_RS12510 4db59c49d4092bb5ca35a7090fd12410 615 PANTHER PTHR35370 2 615 2.0E-130 T 26-04-2016 RGE_RS18085 c4b0ee0eff4638584e06b02f5a24ead1 584 Gene3D G3DSA:3.40.50.970 2 175 2.6E-45 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS18085 c4b0ee0eff4638584e06b02f5a24ead1 584 SUPERFAMILY SSF52518 369 568 9.21E-50 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS18085 c4b0ee0eff4638584e06b02f5a24ead1 584 PANTHER PTHR18968 1 544 3.5E-130 T 26-04-2016 RGE_RS18085 c4b0ee0eff4638584e06b02f5a24ead1 584 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 541 5.9E-31 T 26-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RGE_RS18085 c4b0ee0eff4638584e06b02f5a24ead1 584 Gene3D G3DSA:3.40.50.1220 185 350 1.2E-42 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS18085 c4b0ee0eff4638584e06b02f5a24ead1 584 SUPERFAMILY SSF52518 1 179 1.6E-41 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS18085 c4b0ee0eff4638584e06b02f5a24ead1 584 SUPERFAMILY SSF52467 155 354 4.41E-44 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS18085 c4b0ee0eff4638584e06b02f5a24ead1 584 Gene3D G3DSA:3.40.50.970 351 550 5.9E-51 T 26-04-2016 IPR029061 Thiamin diphosphate-binding fold RGE_RS18085 c4b0ee0eff4638584e06b02f5a24ead1 584 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 429 448 - T 26-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RGE_RS18085 c4b0ee0eff4638584e06b02f5a24ead1 584 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 191 324 1.3E-31 T 26-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RGE_RS18085 c4b0ee0eff4638584e06b02f5a24ead1 584 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 170 9.9E-42 T 26-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RGE_RS00465 64d1ef8ca49108c731df5682a13acea4 294 Pfam PF01040 UbiA prenyltransferase family 25 278 5.5E-55 T 26-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RGE_RS00465 64d1ef8ca49108c731df5682a13acea4 294 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 2 292 26.823 T 26-04-2016 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 UniPathway: UPA00232 RGE_RS00465 64d1ef8ca49108c731df5682a13acea4 294 PANTHER PTHR11048 2 294 5.9E-71 T 26-04-2016 RGE_RS00465 64d1ef8ca49108c731df5682a13acea4 294 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 9 291 1.2E-89 T 26-04-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 UniPathway: UPA00232 RGE_RS00465 64d1ef8ca49108c731df5682a13acea4 294 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 64 86 - T 26-04-2016 IPR030470 UbiA prenyltransferase conserved site RGE_RS07275 f2d89f63b43bb313d2006649e24b348f 386 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 17 359 3.0E-132 T 26-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS07275 f2d89f63b43bb313d2006649e24b348f 386 SUPERFAMILY SSF54862 178 294 1.0E-16 T 26-04-2016 RGE_RS07275 f2d89f63b43bb313d2006649e24b348f 386 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 201 212 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS07275 f2d89f63b43bb313d2006649e24b348f 386 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 9 323 46.963 T 26-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS07275 f2d89f63b43bb313d2006649e24b348f 386 Gene3D G3DSA:3.30.70.20 200 264 1.1E-6 T 26-04-2016 RGE_RS07275 f2d89f63b43bb313d2006649e24b348f 386 Pfam PF13484 4Fe-4S double cluster binding domain 200 264 6.7E-19 T 26-04-2016 RGE_RS07275 f2d89f63b43bb313d2006649e24b348f 386 PANTHER PTHR30002:SF4 4 383 1.3E-141 T 26-04-2016 RGE_RS07275 f2d89f63b43bb313d2006649e24b348f 386 Pfam PF08331 Domain of unknown function (DUF1730) 64 148 3.3E-22 T 26-04-2016 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700|UniPathway: UPA00392 RGE_RS07275 f2d89f63b43bb313d2006649e24b348f 386 PANTHER PTHR30002 4 383 1.3E-141 T 26-04-2016 RGE_RS02200 3e8da96fe13816f68c654c14b8c7cd90 401 SUPERFAMILY SSF51126 50 291 5.83E-16 T 26-04-2016 IPR011050 Pectin lyase fold/virulence factor RGE_RS02200 3e8da96fe13816f68c654c14b8c7cd90 401 Gene3D G3DSA:2.160.20.10 48 259 3.2E-11 T 26-04-2016 IPR012334 Pectin lyase fold RGE_RS09325 b7b0c58c07c6b7d2eda58ffb7618c8c2 868 Pfam PF07589 PEP-CTERM motif 829 856 0.0013 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS09325 b7b0c58c07c6b7d2eda58ffb7618c8c2 868 SUPERFAMILY SSF51126 441 796 2.35E-6 T 26-04-2016 IPR011050 Pectin lyase fold/virulence factor RGE_RS19405 cac6be4d81446b2096367ed6dd99c924 277 Pfam PF01774 UreD urease accessory protein 45 249 3.6E-39 T 26-04-2016 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 RGE_RS19405 cac6be4d81446b2096367ed6dd99c924 277 PANTHER PTHR33643 1 277 4.4E-26 T 26-04-2016 RGE_RS19405 cac6be4d81446b2096367ed6dd99c924 277 PANTHER PTHR33643:SF1 1 277 4.4E-26 T 26-04-2016 RGE_RS19405 cac6be4d81446b2096367ed6dd99c924 277 Hamap MF_01384 Urease accessory protein UreD [ureD]. 3 261 25.804 T 26-04-2016 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 RGE_RS19775 44df8c067c8e240b877f42cd927e06d7 465 Pfam PF00672 HAMP domain 148 214 2.7E-10 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS19775 44df8c067c8e240b877f42cd927e06d7 465 SMART SM00387 353 447 1.2E-5 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19775 44df8c067c8e240b877f42cd927e06d7 465 Gene3D G3DSA:3.30.565.10 315 452 4.8E-8 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19775 44df8c067c8e240b877f42cd927e06d7 465 SMART SM00304 167 219 1.6E-10 T 26-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RGE_RS19775 44df8c067c8e240b877f42cd927e06d7 465 PANTHER PTHR24421:SF1 243 460 3.6E-32 T 26-04-2016 RGE_RS19775 44df8c067c8e240b877f42cd927e06d7 465 PANTHER PTHR24421 243 460 3.6E-32 T 26-04-2016 RGE_RS19775 44df8c067c8e240b877f42cd927e06d7 465 Pfam PF07730 Histidine kinase 248 311 1.4E-8 T 26-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RGE_RS19775 44df8c067c8e240b877f42cd927e06d7 465 SUPERFAMILY SSF55874 311 447 6.68E-17 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS19775 44df8c067c8e240b877f42cd927e06d7 465 SUPERFAMILY SSF158472 167 216 8.24E-5 T 26-04-2016 RGE_RS04155 4d5de43bba7d810e5259b0ba12291d9e 105 Pfam PF09650 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) 4 94 1.6E-30 T 26-04-2016 IPR013433 Putative polyhydroxyalkanoic acid system protein RGE_RS04155 4d5de43bba7d810e5259b0ba12291d9e 105 TIGRFAM TIGR02610 PHA_gran_rgn: putative polyhydroxyalkanoic acid system protein 2 95 2.3E-18 T 26-04-2016 IPR013433 Putative polyhydroxyalkanoic acid system protein RGE_RS03225 19a23ea37fe1e7241b691e52f5dc1608 346 PANTHER PTHR30106 10 346 1.6E-116 T 26-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 RGE_RS03225 19a23ea37fe1e7241b691e52f5dc1608 346 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 16 341 1.4E-94 T 26-04-2016 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 RGE_RS03225 19a23ea37fe1e7241b691e52f5dc1608 346 Pfam PF03601 Conserved hypothetical protein 698 18 323 1.3E-94 T 26-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 RGE_RS03225 19a23ea37fe1e7241b691e52f5dc1608 346 PANTHER PTHR30106:SF2 10 346 1.6E-116 T 26-04-2016 RGE_RS16875 201b76f17563ed6c01daba78ca4f6abe 387 Pfam PF13406 Transglycosylase SLT domain 60 361 6.5E-86 T 26-04-2016 IPR031304 Transglycosylase SLT domain 2 RGE_RS16875 201b76f17563ed6c01daba78ca4f6abe 387 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 65 363 2.9E-96 T 26-04-2016 IPR011757 Lytic transglycosylase MltB RGE_RS16875 201b76f17563ed6c01daba78ca4f6abe 387 PANTHER PTHR30163 57 367 2.8E-99 T 26-04-2016 IPR011757 Lytic transglycosylase MltB RGE_RS16875 201b76f17563ed6c01daba78ca4f6abe 387 Gene3D G3DSA:1.10.530.10 106 161 1.3E-48 T 26-04-2016 RGE_RS16875 201b76f17563ed6c01daba78ca4f6abe 387 Gene3D G3DSA:1.10.530.10 247 366 1.3E-48 T 26-04-2016 RGE_RS16875 201b76f17563ed6c01daba78ca4f6abe 387 SUPERFAMILY SSF53955 51 365 4.5E-72 T 26-04-2016 IPR023346 Lysozyme-like domain RGE_RS16875 201b76f17563ed6c01daba78ca4f6abe 387 PANTHER PTHR30163:SF0 57 367 2.8E-99 T 26-04-2016 RGE_RS09090 0deb5d80987c92981d381fcdff1cd6ff 114 Gene3D G3DSA:3.30.1330.40 11 113 1.4E-25 T 26-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RGE_RS09090 0deb5d80987c92981d381fcdff1cd6ff 114 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 90 108 - T 26-04-2016 IPR019897 RidA, conserved site RGE_RS09090 0deb5d80987c92981d381fcdff1cd6ff 114 SUPERFAMILY SSF55298 4 113 3.46E-31 T 26-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RGE_RS09090 0deb5d80987c92981d381fcdff1cd6ff 114 PANTHER PTHR11803 1 114 2.4E-38 T 26-04-2016 IPR006175 YjgF/YER057c/UK114 family RGE_RS09090 0deb5d80987c92981d381fcdff1cd6ff 114 PANTHER PTHR11803:SF17 1 114 2.4E-38 T 26-04-2016 RGE_RS09090 0deb5d80987c92981d381fcdff1cd6ff 114 Pfam PF01042 Endoribonuclease L-PSP 10 113 6.9E-25 T 26-04-2016 IPR006175 YjgF/YER057c/UK114 family RGE_RS19020 62c7529df7ad2bd70a4d359afddf07f2 147 PANTHER PTHR30455 2 147 5.3E-63 T 26-04-2016 RGE_RS19020 62c7529df7ad2bd70a4d359afddf07f2 147 Pfam PF03477 ATP cone domain 51 136 1.7E-14 T 26-04-2016 IPR005144 ATP-cone domain RGE_RS19020 62c7529df7ad2bd70a4d359afddf07f2 147 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 146 3.6E-58 T 26-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RGE_RS19020 62c7529df7ad2bd70a4d359afddf07f2 147 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 147 81.3 T 26-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RGE_RS19020 62c7529df7ad2bd70a4d359afddf07f2 147 PANTHER PTHR30455:SF2 2 147 5.3E-63 T 26-04-2016 RGE_RS02950 aa56a48f7743dbbd1686f9b09c53820d 79 PANTHER PTHR36508 9 79 3.1E-13 T 26-04-2016 RGE_RS02950 aa56a48f7743dbbd1686f9b09c53820d 79 Gene3D G3DSA:1.20.5.300 10 55 1.1E-9 T 26-04-2016 RGE_RS02950 aa56a48f7743dbbd1686f9b09c53820d 79 Pfam PF04102 SlyX 15 79 1.2E-20 T 26-04-2016 IPR007236 SlyX RGE_RS22505 811c8664fcc30bab201168ed7c6e1bd5 104 PANTHER PTHR10160 9 99 6.1E-34 T 26-04-2016 RGE_RS22505 811c8664fcc30bab201168ed7c6e1bd5 104 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 11 94 2.3E-35 T 26-04-2016 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2 RGE_RS06435 a52ab99460068fb4dbc4d51b4b26687e 1056 SMART SM00481 8 75 1.1E-19 T 26-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 RGE_RS06435 a52ab99460068fb4dbc4d51b4b26687e 1056 Pfam PF14579 Helix-hairpin-helix motif 790 887 2.8E-22 T 26-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS06435 a52ab99460068fb4dbc4d51b4b26687e 1056 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 7 1056 13.874 T 26-04-2016 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS06435 a52ab99460068fb4dbc4d51b4b26687e 1056 Gene3D G3DSA:3.20.20.140 8 76 5.7E-10 T 26-04-2016 RGE_RS06435 a52ab99460068fb4dbc4d51b4b26687e 1056 SUPERFAMILY SSF89550 7 78 5.3E-13 T 26-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RGE_RS06435 a52ab99460068fb4dbc4d51b4b26687e 1056 SUPERFAMILY SSF89550 148 202 5.3E-13 T 26-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RGE_RS06435 a52ab99460068fb4dbc4d51b4b26687e 1056 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 294 716 1.1E-145 T 26-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS06435 a52ab99460068fb4dbc4d51b4b26687e 1056 Pfam PF01336 OB-fold nucleic acid binding domain 970 1028 1.2E-6 T 26-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RGE_RS06435 a52ab99460068fb4dbc4d51b4b26687e 1056 PANTHER PTHR32294:SF4 3 1045 0.0 T 26-04-2016 RGE_RS06435 a52ab99460068fb4dbc4d51b4b26687e 1056 Pfam PF02811 PHP domain 9 104 1.9E-15 T 26-04-2016 IPR004013 PHP domain GO:0003824 RGE_RS06435 a52ab99460068fb4dbc4d51b4b26687e 1056 PANTHER PTHR32294 3 1045 0.0 T 26-04-2016 RGE_RS06435 a52ab99460068fb4dbc4d51b4b26687e 1056 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 8 1001 2.1E-166 T 26-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RGE_RS00090 989c13adb9a3a75a18fbd260650f075a 287 Pfam PF03280 Proteobacterial lipase chaperone protein 140 200 8.0E-6 T 26-04-2016 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 RGE_RS00090 989c13adb9a3a75a18fbd260650f075a 287 SUPERFAMILY SSF158855 71 284 4.18E-26 T 26-04-2016 RGE_RS19285 30d188a8333bc86a072140a321294d27 292 Gene3D G3DSA:3.40.50.300 48 289 4.3E-54 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19285 30d188a8333bc86a072140a321294d27 292 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 48 292 1.2E-115 T 26-04-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD RGE_RS19285 30d188a8333bc86a072140a321294d27 292 PANTHER PTHR24220:SF366 50 292 4.2E-132 T 26-04-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD RGE_RS19285 30d188a8333bc86a072140a321294d27 292 Pfam PF00005 ABC transporter 64 219 2.4E-27 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS19285 30d188a8333bc86a072140a321294d27 292 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 270 291 2.5E-7 T 26-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RGE_RS19285 30d188a8333bc86a072140a321294d27 292 SUPERFAMILY SSF52540 48 290 2.17E-50 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS19285 30d188a8333bc86a072140a321294d27 292 PANTHER PTHR24220 50 292 4.2E-132 T 26-04-2016 RGE_RS22750 60bd010b609240d8299fb1d977bd9179 386 PANTHER PTHR30474:SF1 1 385 6.2E-128 T 26-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 RGE_RS22750 60bd010b609240d8299fb1d977bd9179 386 PANTHER PTHR30474 1 385 6.2E-128 T 26-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RGE_RS22750 60bd010b609240d8299fb1d977bd9179 386 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 24 381 3.2E-118 T 26-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 RGE_RS22750 60bd010b609240d8299fb1d977bd9179 386 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 339 363 - T 26-04-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 RGE_RS22750 60bd010b609240d8299fb1d977bd9179 386 Pfam PF01098 Cell cycle protein 28 382 3.6E-95 T 26-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RGE_RS17045 168c8d75b9a10aa68ae3f4be30756e62 416 PANTHER PTHR30193:SF8 3 71 9.5E-129 T 26-04-2016 RGE_RS17045 168c8d75b9a10aa68ae3f4be30756e62 416 PANTHER PTHR30193:SF8 177 412 9.5E-129 T 26-04-2016 RGE_RS17045 168c8d75b9a10aa68ae3f4be30756e62 416 SUPERFAMILY SSF161098 193 405 1.18E-44 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS17045 168c8d75b9a10aa68ae3f4be30756e62 416 PANTHER PTHR30193 3 71 9.5E-129 T 26-04-2016 RGE_RS17045 168c8d75b9a10aa68ae3f4be30756e62 416 PANTHER PTHR30193 177 412 9.5E-129 T 26-04-2016 RGE_RS17045 168c8d75b9a10aa68ae3f4be30756e62 416 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 218 409 1.9E-11 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS17045 168c8d75b9a10aa68ae3f4be30756e62 416 Gene3D G3DSA:1.10.3720.10 21 90 6.6E-47 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS17045 168c8d75b9a10aa68ae3f4be30756e62 416 Gene3D G3DSA:1.10.3720.10 188 405 6.6E-47 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS13670 70297e965be58ec4b377bf42b9252135 163 PANTHER PTHR30239 1 161 3.1E-82 T 26-04-2016 RGE_RS13670 70297e965be58ec4b377bf42b9252135 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 157 1.6E-62 T 26-04-2016 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS13670 70297e965be58ec4b377bf42b9252135 163 SUPERFAMILY SSF55021 79 162 3.36E-25 T 26-04-2016 RGE_RS13670 70297e965be58ec4b377bf42b9252135 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 4.0E-35 T 26-04-2016 RGE_RS13670 70297e965be58ec4b377bf42b9252135 163 Gene3D G3DSA:3.30.70.1150 83 161 1.6E-29 T 26-04-2016 RGE_RS13670 70297e965be58ec4b377bf42b9252135 163 SUPERFAMILY SSF55021 1 76 1.94E-21 T 26-04-2016 RGE_RS13670 70297e965be58ec4b377bf42b9252135 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 1.3E-26 T 26-04-2016 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RGE_RS13670 70297e965be58ec4b377bf42b9252135 163 Gene3D G3DSA:3.30.70.260 1 78 6.8E-36 T 26-04-2016 RGE_RS13670 70297e965be58ec4b377bf42b9252135 163 Pfam PF13710 ACT domain 13 73 1.9E-14 T 26-04-2016 RGE_RS16375 372131936960e29884bf37e902a2c961 256 SUPERFAMILY SSF54909 149 241 3.59E-6 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS10630 09c610d9a0e8d5e3287f240b0475eadb 369 Gene3D G3DSA:3.40.50.300 28 169 1.2E-13 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10630 09c610d9a0e8d5e3287f240b0475eadb 369 PANTHER PTHR13779 35 365 4.7E-29 T 26-04-2016 RGE_RS10630 09c610d9a0e8d5e3287f240b0475eadb 369 PANTHER PTHR13779:SF23 35 365 4.7E-29 T 26-04-2016 RGE_RS10630 09c610d9a0e8d5e3287f240b0475eadb 369 SUPERFAMILY SSF52540 28 220 2.23E-12 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS14400 514fe8133307e60e5625194476e8ceca 400 Pfam PF00909 Ammonium Transporter Family 12 388 3.1E-88 T 26-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RGE_RS14400 514fe8133307e60e5625194476e8ceca 400 PANTHER PTHR11730:SF6 1 388 2.0E-121 T 26-04-2016 RGE_RS14400 514fe8133307e60e5625194476e8ceca 400 PANTHER PTHR11730 1 388 2.0E-121 T 26-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RGE_RS14400 514fe8133307e60e5625194476e8ceca 400 Gene3D G3DSA:1.10.3430.10 5 374 8.1E-95 T 26-04-2016 IPR029020 Ammonium/urea transporter RGE_RS14400 514fe8133307e60e5625194476e8ceca 400 ProSitePatterns PS01219 Ammonium transporters signature. 156 181 - T 26-04-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 RGE_RS14400 514fe8133307e60e5625194476e8ceca 400 SUPERFAMILY SSF111352 7 374 2.62E-95 T 26-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RGE_RS01670 2c9220591d1f9c68d40227a45997648c 104 SUPERFAMILY SSF50104 3 100 1.65E-30 T 26-04-2016 IPR008991 Translation protein SH3-like domain RGE_RS01670 2c9220591d1f9c68d40227a45997648c 104 PANTHER PTHR12903 3 102 1.6E-37 T 26-04-2016 RGE_RS01670 2c9220591d1f9c68d40227a45997648c 104 SMART SM00739 3 30 4.8E-4 T 26-04-2016 IPR005824 KOW RGE_RS01670 2c9220591d1f9c68d40227a45997648c 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 96 18.635 T 26-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01670 2c9220591d1f9c68d40227a45997648c 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 26-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01670 2c9220591d1f9c68d40227a45997648c 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 102 2.2E-33 T 26-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01670 2c9220591d1f9c68d40227a45997648c 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 102 4.5E-23 T 26-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01670 2c9220591d1f9c68d40227a45997648c 104 Gene3D G3DSA:2.30.30.30 3 91 1.4E-19 T 26-04-2016 IPR014722 Ribosomal protein L2 domain 2 RGE_RS08400 1227032bef78248186dbcc8b1fefc9df 131 Pfam PF00072 Response regulator receiver domain 9 120 1.2E-30 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08400 1227032bef78248186dbcc8b1fefc9df 131 Gene3D G3DSA:3.40.50.2300 5 126 2.5E-39 T 26-04-2016 RGE_RS08400 1227032bef78248186dbcc8b1fefc9df 131 SMART SM00448 6 120 1.7E-33 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS08400 1227032bef78248186dbcc8b1fefc9df 131 SUPERFAMILY SSF52172 4 127 5.55E-37 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS08400 1227032bef78248186dbcc8b1fefc9df 131 PANTHER PTHR26402 6 126 5.0E-43 T 26-04-2016 RGE_RS13855 83533d4d6479c1478a7c6f5afb2d4771 81 Gene3D G3DSA:2.10.230.10 45 74 1.7E-4 T 26-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RGE_RS20220 33434c03311be4eb226322874f4bc325 232 SUPERFAMILY SSF53335 12 187 3.16E-19 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS20220 33434c03311be4eb226322874f4bc325 232 Gene3D G3DSA:3.40.50.150 11 170 5.2E-13 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS20220 33434c03311be4eb226322874f4bc325 232 Pfam PF08241 Methyltransferase domain 61 156 1.5E-9 T 26-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 550 562 - T 26-04-2016 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 Pfam PF00311 Phosphoenolpyruvate carboxylase 124 910 2.2E-287 T 26-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 127 138 - T 26-04-2016 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 PANTHER PTHR30523 1 910 0.0 T 26-04-2016 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 SUPERFAMILY SSF51621 1 910 5.18E-293 T 26-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 PANTHER PTHR30523:SF0 1 910 0.0 T 26-04-2016 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 910 18.959 T 26-04-2016 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 Gene3D G3DSA:1.20.1440.90 260 385 2.9E-26 T 26-04-2016 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 126 139 3.5E-43 T 26-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 594 623 3.5E-43 T 26-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 382 402 3.5E-43 T 26-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 727 753 3.5E-43 T 26-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RGE_RS17825 ab7d6bdedf5e2069005c1b3fbe3b54dc 910 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 231 246 3.5E-43 T 26-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RGE_RS16155 776a83234a8bd3bae0ab5f2000c37820 325 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 22 316 1.1E-93 T 26-04-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 RGE_RS16155 776a83234a8bd3bae0ab5f2000c37820 325 PANTHER PTHR30425:SF1 12 324 3.4E-148 T 26-04-2016 RGE_RS16155 776a83234a8bd3bae0ab5f2000c37820 325 PANTHER PTHR30425 12 324 3.4E-148 T 26-04-2016 RGE_RS16155 776a83234a8bd3bae0ab5f2000c37820 325 Gene3D G3DSA:1.10.3720.10 30 321 2.6E-38 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS16155 776a83234a8bd3bae0ab5f2000c37820 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 318 2.8E-19 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS16155 776a83234a8bd3bae0ab5f2000c37820 325 SUPERFAMILY SSF161098 36 309 2.18E-32 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS06660 788995db2e41769731271a15d341119f 340 PIRSF PIRSF031982 1 340 7.2E-78 T 26-04-2016 IPR016986 Uncharacterised conserved protein UCP031982, alpha/beta hydrolase, XabL RGE_RS06660 788995db2e41769731271a15d341119f 340 Pfam PF12146 Serine aminopeptidase, S33 73 291 6.3E-9 T 26-04-2016 IPR022742 Serine aminopeptidase, S33 RGE_RS06660 788995db2e41769731271a15d341119f 340 SUPERFAMILY SSF53474 53 337 4.4E-27 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS06660 788995db2e41769731271a15d341119f 340 Gene3D G3DSA:3.40.50.1820 229 337 1.5E-40 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS06660 788995db2e41769731271a15d341119f 340 Gene3D G3DSA:3.40.50.1820 29 172 1.5E-40 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12240 6f9c62dd71dd3b372ab405f06c7edbbb 107 PANTHER PTHR34606 9 107 5.9E-19 T 26-04-2016 RGE_RS12240 6f9c62dd71dd3b372ab405f06c7edbbb 107 Pfam PF04972 BON domain 36 103 3.3E-21 T 26-04-2016 IPR007055 BON domain RGE_RS12240 6f9c62dd71dd3b372ab405f06c7edbbb 107 SMART SM00749 41 104 3.1E-5 T 26-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria RGE_RS02535 5357444f875e5c5145746ac0940feeb5 221 PANTHER PTHR38765 6 219 1.5E-23 T 26-04-2016 RGE_RS02535 5357444f875e5c5145746ac0940feeb5 221 Pfam PF04340 Protein of unknown function, DUF484 4 218 2.3E-30 T 26-04-2016 IPR007435 Protein of unknown function DUF484 RGE_RS11695 b7ab9e83dbf42425f0885e1fb9757130 153 PANTHER PTHR33164:SF5 12 147 1.8E-49 T 26-04-2016 RGE_RS11695 b7ab9e83dbf42425f0885e1fb9757130 153 Gene3D G3DSA:1.10.10.10 7 147 5.1E-41 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11695 b7ab9e83dbf42425f0885e1fb9757130 153 Pfam PF01047 MarR family 40 98 7.8E-17 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS11695 b7ab9e83dbf42425f0885e1fb9757130 153 SUPERFAMILY SSF46785 4 146 9.45E-36 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11695 b7ab9e83dbf42425f0885e1fb9757130 153 PANTHER PTHR33164 12 147 1.8E-49 T 26-04-2016 RGE_RS11695 b7ab9e83dbf42425f0885e1fb9757130 153 SMART SM00347 33 133 5.3E-28 T 26-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RGE_RS10405 73a10a302c71e9ba9a6275aadc7b7b1f 305 PANTHER PTHR12277 42 267 2.6E-26 T 26-04-2016 RGE_RS10405 73a10a302c71e9ba9a6275aadc7b7b1f 305 Pfam PF12146 Serine aminopeptidase, S33 72 185 3.2E-12 T 26-04-2016 IPR022742 Serine aminopeptidase, S33 RGE_RS10405 73a10a302c71e9ba9a6275aadc7b7b1f 305 SUPERFAMILY SSF53474 31 287 6.99E-49 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS10405 73a10a302c71e9ba9a6275aadc7b7b1f 305 Gene3D G3DSA:3.40.50.1820 49 285 2.8E-46 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS14970 869db92257c9fc506946c8e551ad4ccc 135 Pfam PF01124 MAPEG family 11 132 3.6E-19 T 26-04-2016 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein RGE_RS14970 869db92257c9fc506946c8e551ad4ccc 135 SUPERFAMILY SSF161084 7 133 1.23E-16 T 26-04-2016 RGE_RS14970 869db92257c9fc506946c8e551ad4ccc 135 Gene3D G3DSA:1.20.120.550 11 129 8.0E-9 T 26-04-2016 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain RGE_RS17065 ccc654dc13b80b62242ace819e7f226e 452 SUPERFAMILY SSF56935 438 452 2.2E-41 T 26-04-2016 RGE_RS17065 ccc654dc13b80b62242ace819e7f226e 452 SUPERFAMILY SSF56935 25 51 2.2E-41 T 26-04-2016 RGE_RS17065 ccc654dc13b80b62242ace819e7f226e 452 SUPERFAMILY SSF56935 78 199 2.2E-41 T 26-04-2016 RGE_RS17065 ccc654dc13b80b62242ace819e7f226e 452 SUPERFAMILY SSF56935 239 401 2.2E-41 T 26-04-2016 RGE_RS17065 ccc654dc13b80b62242ace819e7f226e 452 Pfam PF13609 Gram-negative porin 12 395 1.9E-33 T 26-04-2016 RGE_RS17065 ccc654dc13b80b62242ace819e7f226e 452 Gene3D G3DSA:2.40.160.10 30 200 2.6E-55 T 26-04-2016 IPR023614 Porin domain RGE_RS17065 ccc654dc13b80b62242ace819e7f226e 452 Gene3D G3DSA:2.40.160.10 239 452 2.6E-55 T 26-04-2016 IPR023614 Porin domain RGE_RS14600 8e8bc78e6c6144f000475edf567e2b24 71 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 15 62 2.6E-19 T 26-04-2016 IPR010260 Prophage CP4-57 regulatory protein (AlpA) RGE_RS12105 a095f3d6d2a7c363355419f5aa4d117c 371 PANTHER PTHR30160:SF11 16 370 9.0E-43 T 26-04-2016 RGE_RS12105 a095f3d6d2a7c363355419f5aa4d117c 371 Gene3D G3DSA:3.40.50.2000 16 176 1.2E-32 T 26-04-2016 RGE_RS12105 a095f3d6d2a7c363355419f5aa4d117c 371 PANTHER PTHR30160 16 370 9.0E-43 T 26-04-2016 RGE_RS12105 a095f3d6d2a7c363355419f5aa4d117c 371 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 113 337 3.2E-32 T 26-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 RGE_RS12105 a095f3d6d2a7c363355419f5aa4d117c 371 SUPERFAMILY SSF53756 16 359 1.01E-77 T 26-04-2016 RGE_RS12105 a095f3d6d2a7c363355419f5aa4d117c 371 Gene3D G3DSA:3.40.50.2000 191 359 1.3E-48 T 26-04-2016 RGE_RS19430 00d6c55de301c1868b13bbfee4c21107 256 SUPERFAMILY SSF161098 53 241 5.63E-29 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS19430 00d6c55de301c1868b13bbfee4c21107 256 PANTHER PTHR30151 8 249 2.7E-64 T 26-04-2016 RGE_RS19430 00d6c55de301c1868b13bbfee4c21107 256 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 241 2.7E-22 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS19430 00d6c55de301c1868b13bbfee4c21107 256 Gene3D G3DSA:1.10.3720.10 52 246 2.5E-23 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 SMART SM00387 473 586 1.3E-38 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 SMART SM00388 363 429 1.1E-14 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 Gene3D G3DSA:3.30.450.20 150 264 5.4E-4 T 26-04-2016 RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 Gene3D G3DSA:1.10.287.130 358 425 2.3E-12 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 Pfam PF00512 His Kinase A (phospho-acceptor) domain 363 429 2.6E-13 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 PANTHER PTHR24423 170 272 4.1E-72 T 26-04-2016 RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 PANTHER PTHR24423 33 49 4.1E-72 T 26-04-2016 RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 PANTHER PTHR24423 331 589 4.1E-72 T 26-04-2016 RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 SUPERFAMILY SSF47384 353 430 6.08E-15 T 26-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 Gene3D G3DSA:3.30.565.10 430 586 1.6E-42 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 473 583 1.8E-21 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 SUPERFAMILY SSF55874 418 583 2.1E-40 T 26-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 563 3.2E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 PRINTS PR00344 Bacterial sensor protein C-terminal signature 510 524 3.2E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS23200 c313202e5e033c9946a638fa71b2cfa0 597 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 538 3.2E-11 T 26-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RGE_RS04950 7b15527e4e8a85754796103e5eb9306e 550 Gene3D G3DSA:3.40.50.300 27 173 5.6E-18 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04950 7b15527e4e8a85754796103e5eb9306e 550 PANTHER PTHR35894:SF2 3 550 8.6E-84 T 26-04-2016 RGE_RS04950 7b15527e4e8a85754796103e5eb9306e 550 SUPERFAMILY SSF47090 511 537 2.94E-5 T 26-04-2016 IPR002477 Peptidoglycan binding-like RGE_RS04950 7b15527e4e8a85754796103e5eb9306e 550 PANTHER PTHR35894 3 550 8.6E-84 T 26-04-2016 RGE_RS04950 7b15527e4e8a85754796103e5eb9306e 550 Pfam PF13401 AAA domain 42 171 5.7E-23 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS04950 7b15527e4e8a85754796103e5eb9306e 550 SMART SM00382 43 189 1.7E-4 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS04950 7b15527e4e8a85754796103e5eb9306e 550 SUPERFAMILY SSF52540 6 264 4.12E-34 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04950 7b15527e4e8a85754796103e5eb9306e 550 Gene3D G3DSA:1.10.101.10 509 539 1.7E-6 T 26-04-2016 IPR002477 Peptidoglycan binding-like RGE_RS04950 7b15527e4e8a85754796103e5eb9306e 550 Pfam PF01471 Putative peptidoglycan binding domain 490 534 4.4E-6 T 26-04-2016 IPR002477 Peptidoglycan binding-like RGE_RS22340 fce6058295e3017c19c6cee6136f89e4 352 PANTHER PTHR32196 1 352 5.6E-69 T 26-04-2016 RGE_RS22340 fce6058295e3017c19c6cee6136f89e4 352 Pfam PF02653 Branched-chain amino acid transport system / permease component 58 340 2.5E-36 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS22340 fce6058295e3017c19c6cee6136f89e4 352 PANTHER PTHR32196:SF30 1 352 5.6E-69 T 26-04-2016 RGE_RS19635 874513faeb9ad7b8654da284ae10c23b 129 SUPERFAMILY SSF55248 16 102 2.88E-27 T 26-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RGE_RS19635 874513faeb9ad7b8654da284ae10c23b 129 Gene3D G3DSA:3.30.1360.20 26 102 9.6E-26 T 26-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RGE_RS19635 874513faeb9ad7b8654da284ae10c23b 129 PANTHER PTHR12599 16 104 6.6E-18 T 26-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RGE_RS19635 874513faeb9ad7b8654da284ae10c23b 129 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 15 101 7.8E-25 T 26-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RGE_RS23435 ec2b311a531dd238fbd42e9e49ec91db 161 Gene3D G3DSA:3.30.70.330 3 94 9.4E-31 T 26-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 RGE_RS23435 ec2b311a531dd238fbd42e9e49ec91db 161 SUPERFAMILY SSF54928 3 113 6.99E-37 T 26-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 RGE_RS23435 ec2b311a531dd238fbd42e9e49ec91db 161 SMART SM00360 4 77 5.9E-30 T 26-04-2016 IPR000504 RNA recognition motif domain GO:0003676 RGE_RS23435 ec2b311a531dd238fbd42e9e49ec91db 161 PANTHER PTHR24012 3 156 9.3E-39 T 26-04-2016 RGE_RS23435 ec2b311a531dd238fbd42e9e49ec91db 161 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 74 1.3E-22 T 26-04-2016 IPR000504 RNA recognition motif domain GO:0003676 RGE_RS22160 94e97ed427ae6fdff10e4f03f0a50a72 277 Gene3D G3DSA:3.90.226.10 5 212 4.1E-55 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS22160 94e97ed427ae6fdff10e4f03f0a50a72 277 PANTHER PTHR11941 4 268 3.9E-87 T 26-04-2016 RGE_RS22160 94e97ed427ae6fdff10e4f03f0a50a72 277 SUPERFAMILY SSF52096 1 270 3.42E-66 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS22160 94e97ed427ae6fdff10e4f03f0a50a72 277 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 268 6.2E-43 T 26-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RGE_RS22160 94e97ed427ae6fdff10e4f03f0a50a72 277 PANTHER PTHR11941:SF43 4 268 3.9E-87 T 26-04-2016 RGE_RS22160 94e97ed427ae6fdff10e4f03f0a50a72 277 Gene3D G3DSA:1.10.12.10 213 271 1.0E-16 T 26-04-2016 IPR014748 Crontonase, C-terminal RGE_RS12480 93e427f55d097b0ac3033b5ee1aa573b 319 PANTHER PTHR35604:SF2 13 318 1.1E-161 T 26-04-2016 RGE_RS12480 93e427f55d097b0ac3033b5ee1aa573b 319 Pfam PF05598 Transposase domain (DUF772) 47 115 9.1E-21 T 26-04-2016 IPR008490 Transposase InsH, N-terminal RGE_RS12480 93e427f55d097b0ac3033b5ee1aa573b 319 Pfam PF01609 Transposase DDE domain 134 307 7.2E-28 T 26-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RGE_RS12480 93e427f55d097b0ac3033b5ee1aa573b 319 PANTHER PTHR35604 13 318 1.1E-161 T 26-04-2016 RGE_RS19650 59f9b6c9bbc1540c657154a900f7c90a 372 PIRSF PIRSF016817 1 372 1.0E-72 T 26-04-2016 IPR016677 Uncharacterised conserved protein UCP016817, ATP-dependent carboligase RGE_RS19650 59f9b6c9bbc1540c657154a900f7c90a 372 Pfam PF02655 ATP-grasp domain 112 261 1.5E-10 T 26-04-2016 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 RGE_RS19650 59f9b6c9bbc1540c657154a900f7c90a 372 Gene3D G3DSA:3.30.470.20 174 355 1.6E-6 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS19650 59f9b6c9bbc1540c657154a900f7c90a 372 SUPERFAMILY SSF56059 106 296 3.53E-12 T 26-04-2016 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 319 4.6E-125 T 26-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 PANTHER PTHR11735:SF6 1 348 2.7E-140 T 26-04-2016 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 SUPERFAMILY SSF53067 105 314 1.91E-42 T 26-04-2016 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 340 60.67 T 26-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 Pfam PF00814 Glycoprotease family 28 312 4.8E-94 T 26-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 PANTHER PTHR11735 1 348 2.7E-140 T 26-04-2016 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 312 3.4E-105 T 26-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 SUPERFAMILY SSF53067 3 126 9.71E-26 T 26-04-2016 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 Gene3D G3DSA:3.30.420.40 1 163 1.4E-42 T 26-04-2016 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 269 278 7.6E-48 T 26-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 7.6E-48 T 26-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 101 120 7.6E-48 T 26-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 80 100 7.6E-48 T 26-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 158 179 7.6E-48 T 26-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RGE_RS07610 751a032ae5249c1edb07b7bc93d51ae5 348 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 135 147 7.6E-48 T 26-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RGE_RS06100 907f60dff37cf7f803158eac1aee920c 216 PANTHER PTHR11670 1 208 3.7E-104 T 26-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06100 907f60dff37cf7f803158eac1aee920c 216 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 9.6E-81 T 26-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06100 907f60dff37cf7f803158eac1aee920c 216 Gene3D G3DSA:3.20.19.10 1 204 3.7E-52 T 26-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RGE_RS06100 907f60dff37cf7f803158eac1aee920c 216 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 43.881 T 26-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS06100 907f60dff37cf7f803158eac1aee920c 216 SUPERFAMILY SSF52016 1 201 5.89E-62 T 26-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RGE_RS06100 907f60dff37cf7f803158eac1aee920c 216 PANTHER PTHR11670:SF27 1 208 3.7E-104 T 26-04-2016 RGE_RS06100 907f60dff37cf7f803158eac1aee920c 216 Pfam PF00694 Aconitase C-terminal domain 1 132 4.5E-36 T 26-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RGE_RS09690 63ffc7e5be290d539f7ea0e3d9bac71b 100 Pfam PF10135 Rod binding protein 65 98 1.4E-5 T 26-04-2016 IPR019301 Flagellar protein FlgJ, N-terminal RGE_RS22075 c2702054b91e313f998f1307423bf2cc 166 PANTHER PTHR38098:SF1 5 165 3.7E-13 T 26-04-2016 RGE_RS22075 c2702054b91e313f998f1307423bf2cc 166 PANTHER PTHR38098 5 165 3.7E-13 T 26-04-2016 RGE_RS22075 c2702054b91e313f998f1307423bf2cc 166 Pfam PF04390 Lipopolysaccharide-assembly 16 161 9.3E-16 T 26-04-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 RGE_RS22075 c2702054b91e313f998f1307423bf2cc 166 Gene3D G3DSA:3.30.160.150 24 165 1.1E-34 T 26-04-2016 RGE_RS22075 c2702054b91e313f998f1307423bf2cc 166 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 9 166 24.189 T 26-04-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 RGE_RS00580 a928ca33723fbc9a9e02b783008c7d3c 1860 Pfam PF02450 Lecithin:cholesterol acyltransferase 587 696 3.4E-7 T 26-04-2016 IPR003386 Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase GO:0006629|GO:0008374 RGE_RS00580 a928ca33723fbc9a9e02b783008c7d3c 1860 Pfam PF12770 CHAT domain 1207 1493 1.6E-28 T 26-04-2016 IPR024983 CHAT domain RGE_RS00580 a928ca33723fbc9a9e02b783008c7d3c 1860 Gene3D G3DSA:3.40.50.1820 194 292 8.1E-6 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00580 a928ca33723fbc9a9e02b783008c7d3c 1860 SUPERFAMILY SSF53474 330 398 2.51E-10 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00580 a928ca33723fbc9a9e02b783008c7d3c 1860 SUPERFAMILY SSF53474 427 457 2.51E-10 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00580 a928ca33723fbc9a9e02b783008c7d3c 1860 SUPERFAMILY SSF53474 194 283 2.51E-10 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00580 a928ca33723fbc9a9e02b783008c7d3c 1860 Gene3D G3DSA:3.40.50.1820 537 546 1.5E-18 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00580 a928ca33723fbc9a9e02b783008c7d3c 1860 Gene3D G3DSA:3.40.50.1820 797 880 1.5E-18 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00580 a928ca33723fbc9a9e02b783008c7d3c 1860 Gene3D G3DSA:3.40.50.1820 585 687 1.5E-18 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00580 a928ca33723fbc9a9e02b783008c7d3c 1860 Gene3D G3DSA:1.25.40.10 1573 1686 4.0E-7 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00580 a928ca33723fbc9a9e02b783008c7d3c 1860 SUPERFAMILY SSF53474 587 752 8.22E-15 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00580 a928ca33723fbc9a9e02b783008c7d3c 1860 SUPERFAMILY SSF53474 533 548 8.22E-15 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS10270 715979186e408bf47dc807cc44e4d3db 184 SUPERFAMILY SSF55166 68 184 3.92E-31 T 26-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RGE_RS10270 715979186e408bf47dc807cc44e4d3db 184 Pfam PF05951 Bacterial protein of unknown function (DUF882) 36 184 2.4E-49 T 26-04-2016 IPR010275 Protein of unknown function DUF882 RGE_RS10270 715979186e408bf47dc807cc44e4d3db 184 PANTHER PTHR37425 1 184 5.3E-40 T 26-04-2016 RGE_RS10270 715979186e408bf47dc807cc44e4d3db 184 Gene3D G3DSA:3.30.1380.10 71 184 1.7E-27 T 26-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RGE_RS00665 f4d901a18e8685c1a71eaedeaf4f1362 443 PANTHER PTHR13943 137 435 1.0E-110 T 26-04-2016 RGE_RS00665 f4d901a18e8685c1a71eaedeaf4f1362 443 PANTHER PTHR13943 39 114 1.0E-110 T 26-04-2016 RGE_RS00665 f4d901a18e8685c1a71eaedeaf4f1362 443 PANTHER PTHR13943:SF48 137 435 1.0E-110 T 26-04-2016 RGE_RS00665 f4d901a18e8685c1a71eaedeaf4f1362 443 PANTHER PTHR13943:SF48 39 114 1.0E-110 T 26-04-2016 RGE_RS00665 f4d901a18e8685c1a71eaedeaf4f1362 443 Pfam PF07287 Protein of unknown function (DUF1446) 6 361 1.6E-137 T 26-04-2016 IPR010839 Protein of unknown function DUF1446 RGE_RS15230 00562f5379a917ecadc396dc4897ad61 293 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 24 283 5.9E-23 T 26-04-2016 IPR017039 Virulence factor BrkB RGE_RS15230 00562f5379a917ecadc396dc4897ad61 293 PANTHER PTHR30213:SF1 14 286 1.4E-59 T 26-04-2016 RGE_RS15230 00562f5379a917ecadc396dc4897ad61 293 PANTHER PTHR30213 14 286 1.4E-59 T 26-04-2016 RGE_RS15230 00562f5379a917ecadc396dc4897ad61 293 Pfam PF03631 Virulence factor BrkB 32 287 1.0E-51 T 26-04-2016 IPR017039 Virulence factor BrkB RGE_RS15230 00562f5379a917ecadc396dc4897ad61 293 PIRSF PIRSF035875 5 293 5.4E-67 T 26-04-2016 IPR017039 Virulence factor BrkB RGE_RS20985 8d088b26d4504e09f8b790dcd746070d 151 Pfam PF01592 NifU-like N terminal domain 2 126 1.5E-55 T 26-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 RGE_RS20985 8d088b26d4504e09f8b790dcd746070d 151 SUPERFAMILY SSF82649 1 126 2.62E-46 T 26-04-2016 RGE_RS20985 8d088b26d4504e09f8b790dcd746070d 151 PANTHER PTHR10093 1 127 5.0E-95 T 26-04-2016 RGE_RS20985 8d088b26d4504e09f8b790dcd746070d 151 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 126 7.2E-64 T 26-04-2016 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 RGE_RS20985 8d088b26d4504e09f8b790dcd746070d 151 Gene3D G3DSA:3.90.1010.10 2 126 1.8E-53 T 26-04-2016 RGE_RS20985 8d088b26d4504e09f8b790dcd746070d 151 PANTHER PTHR10093:SF3 1 127 5.0E-95 T 26-04-2016 RGE_RS00965 df889485ed066495e987725f41cfd596 211 Pfam PF13649 Methyltransferase domain 41 133 1.2E-13 T 26-04-2016 RGE_RS00965 df889485ed066495e987725f41cfd596 211 SUPERFAMILY SSF53335 3 151 1.13E-28 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS00965 df889485ed066495e987725f41cfd596 211 PANTHER PTHR10108 3 140 3.1E-16 T 26-04-2016 RGE_RS00965 df889485ed066495e987725f41cfd596 211 Gene3D G3DSA:3.40.50.150 3 183 5.5E-25 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS23130 432c56165a829dcabc6459bb841f0f69 511 Pfam PF05935 Arylsulfotransferase (ASST) 83 498 5.9E-61 T 26-04-2016 IPR010262 Arylsulfotransferase RGE_RS15760 33c6401c2158bf5c7efc208f8e841f29 302 PANTHER PTHR32322:SF8 6 297 4.2E-57 T 26-04-2016 RGE_RS15760 33c6401c2158bf5c7efc208f8e841f29 302 SUPERFAMILY SSF103481 51 150 2.88E-10 T 26-04-2016 RGE_RS15760 33c6401c2158bf5c7efc208f8e841f29 302 Pfam PF00892 EamA-like transporter family 17 147 1.8E-15 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS15760 33c6401c2158bf5c7efc208f8e841f29 302 Pfam PF00892 EamA-like transporter family 158 298 2.6E-15 T 26-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RGE_RS15760 33c6401c2158bf5c7efc208f8e841f29 302 PANTHER PTHR32322 6 297 4.2E-57 T 26-04-2016 RGE_RS15760 33c6401c2158bf5c7efc208f8e841f29 302 SUPERFAMILY SSF103481 199 300 3.01E-12 T 26-04-2016 RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 Gene3D G3DSA:3.30.365.10 625 779 1.4E-81 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 Gene3D G3DSA:3.30.365.10 367 458 1.4E-81 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 Gene3D G3DSA:3.30.365.10 459 615 8.7E-57 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 PANTHER PTHR11908:SF66 20 785 0.0 T 26-04-2016 RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 36 138 4.8E-17 T 26-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 21 782 0.0 T 26-04-2016 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 SMART SM01008 35 147 1.3E-30 T 26-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 Gene3D G3DSA:3.30.365.10 291 366 3.2E-22 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 Gene3D G3DSA:3.30.365.10 149 182 3.2E-22 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 PANTHER PTHR11908 20 785 0.0 T 26-04-2016 RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 Gene3D G3DSA:3.90.1170.50 13 138 1.1E-33 T 26-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 SUPERFAMILY SSF54665 14 138 5.63E-31 T 26-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 168 711 8.6E-202 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 SUPERFAMILY SSF56003 147 780 1.44E-201 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS19510 ae41d4547f64825bf898ea686b4e0461 785 Gene3D G3DSA:3.30.365.10 183 289 4.4E-37 T 26-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RGE_RS02550 adc6d2d7068d247533da0b1f5d92fea8 311 Gene3D G3DSA:1.10.3680.10 5 121 2.6E-13 T 26-04-2016 IPR029024 TerB-like RGE_RS02550 adc6d2d7068d247533da0b1f5d92fea8 311 Pfam PF04391 Protein of unknown function (DUF533) 9 116 3.0E-8 T 26-04-2016 IPR007486 Inner membrane protein YebE RGE_RS02550 adc6d2d7068d247533da0b1f5d92fea8 311 SUPERFAMILY SSF158682 4 120 3.14E-15 T 26-04-2016 IPR029024 TerB-like RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 Pfam PF00561 alpha/beta hydrolase fold 74 436 5.3E-22 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 PANTHER PTHR10992:SF874 158 251 1.2E-54 T 26-04-2016 RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 Gene3D G3DSA:3.40.50.1820 159 280 3.4E-49 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 Gene3D G3DSA:3.40.50.1820 339 449 3.4E-49 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 Gene3D G3DSA:3.40.50.1820 38 122 3.4E-49 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 SUPERFAMILY SSF53474 56 117 2.06E-32 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 SUPERFAMILY SSF53474 146 317 2.06E-32 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 SUPERFAMILY SSF53474 376 435 2.06E-32 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 PANTHER PTHR10992:SF874 356 453 1.2E-54 T 26-04-2016 RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 PANTHER PTHR10992:SF874 72 121 1.2E-54 T 26-04-2016 RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 106 117 2.2E-5 T 26-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 75 83 2.2E-5 T 26-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 185 199 2.2E-5 T 26-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 PANTHER PTHR10992 356 453 1.2E-54 T 26-04-2016 RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 PANTHER PTHR10992 72 121 1.2E-54 T 26-04-2016 RGE_RS00235 92f80d1057a01ace637dda576ccb0fa6 481 PANTHER PTHR10992 158 251 1.2E-54 T 26-04-2016 RGE_RS09265 b5d27c72fe4d6b3f32cf737d6b695700 30 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 8 29 8.4E-10 T 26-04-2016 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 RGE_RS09265 b5d27c72fe4d6b3f32cf737d6b695700 30 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 8 29 1.4E-9 T 26-04-2016 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 RGE_RS18445 657204a33151fc8e0a35e48848032e95 154 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 32 5.2E-7 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS18445 657204a33151fc8e0a35e48848032e95 154 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 10 31 4.7E-7 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS18445 657204a33151fc8e0a35e48848032e95 154 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS18445 657204a33151fc8e0a35e48848032e95 154 SUPERFAMILY SSF54523 13 112 6.04E-11 T 26-04-2016 RGE_RS20605 76744e85ac73816d2ce2af4590337050 347 Pfam PF11906 Protein of unknown function (DUF3426) 203 344 3.4E-36 T 26-04-2016 IPR021834 Protein of unknown function DUF3426 RGE_RS20605 76744e85ac73816d2ce2af4590337050 347 Pfam PF13719 zinc-ribbon domain 5 39 6.4E-16 T 26-04-2016 IPR011723 Zinc finger/thioredoxin putative RGE_RS20605 76744e85ac73816d2ce2af4590337050 347 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 4 40 1.4E-14 T 26-04-2016 IPR011723 Zinc finger/thioredoxin putative RGE_RS12400 8729db6bf0c1d22535af59d005e76cd3 403 Gene3D G3DSA:3.20.20.70 136 346 1.6E-17 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS12400 8729db6bf0c1d22535af59d005e76cd3 403 SUPERFAMILY SSF102114 133 357 1.07E-19 T 26-04-2016 RGE_RS16825 c28aadc0402cb0caf8a162b0c56652b5 225 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 19 218 3.2E-93 T 26-04-2016 IPR008517 Protein of unknown function DUF799 RGE_RS23275 f4c94d20ed5d7362316bbead726d3348 125 Pfam PF13663 Domain of unknown function (DUF4148) 1 57 2.9E-7 T 26-04-2016 IPR025421 Protein of unknown function DUF4148 RGE_RS20805 e7cd95bb1593d2e8b2af7eb348114f90 66 PANTHER PTHR36150:SF1 2 50 3.5E-16 T 26-04-2016 RGE_RS20805 e7cd95bb1593d2e8b2af7eb348114f90 66 Pfam PF03884 Domain of unknown function (DUF329) 7 55 2.2E-23 T 26-04-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 RGE_RS20805 e7cd95bb1593d2e8b2af7eb348114f90 66 PANTHER PTHR36150 2 50 3.5E-16 T 26-04-2016 RGE_RS20805 e7cd95bb1593d2e8b2af7eb348114f90 66 SUPERFAMILY SSF57716 4 58 8.55E-19 T 26-04-2016 RGE_RS20805 e7cd95bb1593d2e8b2af7eb348114f90 66 Gene3D G3DSA:3.30.50.10 5 58 9.5E-23 T 26-04-2016 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 RGE_RS20805 e7cd95bb1593d2e8b2af7eb348114f90 66 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 3 60 17.569 T 26-04-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 RGE_RS18285 02eb4cac3b0e07a06b91feeec3636527 554 Gene3D G3DSA:1.10.287.950 281 474 5.7E-47 T 26-04-2016 RGE_RS18285 02eb4cac3b0e07a06b91feeec3636527 554 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 185 1.6E-30 T 26-04-2016 IPR024478 4HB MCP domain RGE_RS18285 02eb4cac3b0e07a06b91feeec3636527 554 PANTHER PTHR32089 187 505 2.8E-101 T 26-04-2016 RGE_RS18285 02eb4cac3b0e07a06b91feeec3636527 554 PANTHER PTHR32089 67 140 2.8E-101 T 26-04-2016 RGE_RS18285 02eb4cac3b0e07a06b91feeec3636527 554 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 283 312 2.5E-27 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS18285 02eb4cac3b0e07a06b91feeec3636527 554 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 7 32 2.5E-27 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS18285 02eb4cac3b0e07a06b91feeec3636527 554 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 389 418 2.5E-27 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS18285 02eb4cac3b0e07a06b91feeec3636527 554 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 360 387 2.5E-27 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS18285 02eb4cac3b0e07a06b91feeec3636527 554 SMART SM00283 269 502 1.7E-72 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS18285 02eb4cac3b0e07a06b91feeec3636527 554 SUPERFAMILY SSF58104 238 503 1.48E-64 T 26-04-2016 RGE_RS18285 02eb4cac3b0e07a06b91feeec3636527 554 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 501 5.1E-42 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS22335 5aa7467bb07e30328389f86396e1d53a 311 PANTHER PTHR32196:SF40 18 311 2.4E-60 T 26-04-2016 RGE_RS22335 5aa7467bb07e30328389f86396e1d53a 311 PANTHER PTHR32196 18 311 2.4E-60 T 26-04-2016 RGE_RS22335 5aa7467bb07e30328389f86396e1d53a 311 Pfam PF02653 Branched-chain amino acid transport system / permease component 17 289 5.0E-37 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS07930 3bd5269cc44c53c01259ca690d1bfdc5 585 PANTHER PTHR30505:SF0 10 580 7.1E-235 T 26-04-2016 RGE_RS07930 3bd5269cc44c53c01259ca690d1bfdc5 585 Gene3D G3DSA:3.40.50.2300 124 226 7.8E-40 T 26-04-2016 RGE_RS07930 3bd5269cc44c53c01259ca690d1bfdc5 585 Gene3D G3DSA:3.40.50.2300 3 96 2.4E-13 T 26-04-2016 RGE_RS07930 3bd5269cc44c53c01259ca690d1bfdc5 585 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 129 217 2.5E-16 T 26-04-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RGE_RS07930 3bd5269cc44c53c01259ca690d1bfdc5 585 SUPERFAMILY SSF52794 126 226 2.62E-35 T 26-04-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RGE_RS07930 3bd5269cc44c53c01259ca690d1bfdc5 585 PANTHER PTHR30505 10 580 7.1E-235 T 26-04-2016 RGE_RS07930 3bd5269cc44c53c01259ca690d1bfdc5 585 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 128 210 3.1E-35 T 26-04-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 RGE_RS07930 3bd5269cc44c53c01259ca690d1bfdc5 585 SUPERFAMILY SSF52794 3 93 7.85E-15 T 26-04-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RGE_RS07930 3bd5269cc44c53c01259ca690d1bfdc5 585 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 239 575 1.0E-130 T 26-04-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 RGE_RS20300 6946dfbc1451a688e4a513dab1401017 243 PANTHER PTHR35272 1 243 2.6E-32 T 26-04-2016 RGE_RS20300 6946dfbc1451a688e4a513dab1401017 243 SUPERFAMILY SSF54423 40 84 6.47E-9 T 26-04-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal RGE_RS20300 6946dfbc1451a688e4a513dab1401017 243 SUPERFAMILY SSF52833 82 236 6.01E-30 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20300 6946dfbc1451a688e4a513dab1401017 243 Gene3D G3DSA:3.40.30.10 109 240 7.2E-34 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20300 6946dfbc1451a688e4a513dab1401017 243 Pfam PF13098 Thioredoxin-like domain 113 236 4.5E-28 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20300 6946dfbc1451a688e4a513dab1401017 243 Pfam PF10411 Disulfide bond isomerase protein N-terminus 29 83 6.8E-19 T 26-04-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal RGE_RS20300 6946dfbc1451a688e4a513dab1401017 243 Gene3D G3DSA:3.10.450.70 25 88 2.5E-17 T 26-04-2016 IPR009094 Disulphide bond isomerase, DsbC, N-terminal RGE_RS03755 ff3e12884bf8f966d9cc67a247b59a8c 146 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 32.261 T 26-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 RGE_RS03755 ff3e12884bf8f966d9cc67a247b59a8c 146 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 1.2E-49 T 26-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 RGE_RS03755 ff3e12884bf8f966d9cc67a247b59a8c 146 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 142 1.0E-49 T 26-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 RGE_RS03755 ff3e12884bf8f966d9cc67a247b59a8c 146 Gene3D G3DSA:3.50.80.10 1 143 1.1E-53 T 26-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain RGE_RS03755 ff3e12884bf8f966d9cc67a247b59a8c 146 PANTHER PTHR10472 2 141 2.6E-67 T 26-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 RGE_RS03755 ff3e12884bf8f966d9cc67a247b59a8c 146 SUPERFAMILY SSF69500 1 143 5.1E-52 T 26-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain RGE_RS04085 08e26d800e714eacb06eecc8b3593fe3 206 Gene3D G3DSA:1.10.10.640 70 110 4.3E-29 T 26-04-2016 IPR023094 Toluene tolerance protein, alpha-helical RGE_RS04085 08e26d800e714eacb06eecc8b3593fe3 206 Gene3D G3DSA:1.10.10.640 168 201 4.3E-29 T 26-04-2016 IPR023094 Toluene tolerance protein, alpha-helical RGE_RS04085 08e26d800e714eacb06eecc8b3593fe3 206 Pfam PF05494 MlaC protein 32 192 2.9E-53 T 26-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC RGE_RS04085 08e26d800e714eacb06eecc8b3593fe3 206 PANTHER PTHR36573 1 206 5.2E-36 T 26-04-2016 RGE_RS04085 08e26d800e714eacb06eecc8b3593fe3 206 PIRSF PIRSF004649 1 206 9.2E-50 T 26-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC RGE_RS04085 08e26d800e714eacb06eecc8b3593fe3 206 Gene3D G3DSA:3.10.450.50 113 167 3.5E-28 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS04085 08e26d800e714eacb06eecc8b3593fe3 206 Gene3D G3DSA:3.10.450.50 25 69 3.5E-28 T 26-04-2016 IPR032710 NTF2-like domain RGE_RS04520 b17d793987f4d5fa11dcd8c0edefb040 246 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 50 220 7.7E-11 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS04520 b17d793987f4d5fa11dcd8c0edefb040 246 SUPERFAMILY SSF52266 43 230 2.17E-24 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS04520 b17d793987f4d5fa11dcd8c0edefb040 246 Gene3D G3DSA:3.40.50.1110 44 232 2.4E-16 T 26-04-2016 IPR013830 SGNH hydrolase-type esterase domain RGE_RS21700 64f199db6ef83c95a3998eee34bd0a3a 157 PANTHER PTHR34390 3 157 5.1E-25 T 26-04-2016 RGE_RS21700 64f199db6ef83c95a3998eee34bd0a3a 157 Pfam PF12821 Threonine/Serine exporter, ThrE 11 147 2.1E-23 T 26-04-2016 IPR024528 Threonine/Serine exporter, ThrE RGE_RS19090 249ef2be5be7b6b05bdd083cfe6f18a7 227 PANTHER PTHR30625:SF3 1 220 7.5E-65 T 26-04-2016 RGE_RS19090 249ef2be5be7b6b05bdd083cfe6f18a7 227 Pfam PF01618 MotA/TolQ/ExbB proton channel family 77 206 1.5E-42 T 26-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RGE_RS19090 249ef2be5be7b6b05bdd083cfe6f18a7 227 TIGRFAM TIGR02796 tolQ: protein TolQ 6 218 8.6E-84 T 26-04-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 RGE_RS19090 249ef2be5be7b6b05bdd083cfe6f18a7 227 PANTHER PTHR30625 1 220 7.5E-65 T 26-04-2016 RGE_RS06870 a1cfe01a42ecf92ccbd9dd3e4d0b42ce 172 Pfam PF01252 Signal peptidase (SPase) II 18 163 1.9E-37 T 26-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RGE_RS06870 a1cfe01a42ecf92ccbd9dd3e4d0b42ce 172 PANTHER PTHR33695:SF1 10 165 4.0E-44 T 26-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RGE_RS06870 a1cfe01a42ecf92ccbd9dd3e4d0b42ce 172 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 9 170 17.066 T 26-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RGE_RS06870 a1cfe01a42ecf92ccbd9dd3e4d0b42ce 172 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 145 161 4.1E-18 T 26-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RGE_RS06870 a1cfe01a42ecf92ccbd9dd3e4d0b42ce 172 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 55 63 4.1E-18 T 26-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RGE_RS06870 a1cfe01a42ecf92ccbd9dd3e4d0b42ce 172 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 102 117 4.1E-18 T 26-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RGE_RS06870 a1cfe01a42ecf92ccbd9dd3e4d0b42ce 172 PANTHER PTHR33695 10 165 4.0E-44 T 26-04-2016 RGE_RS06870 a1cfe01a42ecf92ccbd9dd3e4d0b42ce 172 ProSitePatterns PS00855 Signal peptidases II signature. 105 117 - T 26-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RGE_RS06870 a1cfe01a42ecf92ccbd9dd3e4d0b42ce 172 TIGRFAM TIGR00077 lspA: signal peptidase II 9 168 4.6E-40 T 26-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RGE_RS02140 496991bfb2378df95fada75bc268f109 269 PANTHER PTHR30413 2 269 1.7E-62 T 26-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RGE_RS02140 496991bfb2378df95fada75bc268f109 269 PANTHER PTHR30413:SF8 2 269 1.7E-62 T 26-04-2016 RGE_RS02140 496991bfb2378df95fada75bc268f109 269 Pfam PF01061 ABC-2 type transporter 11 190 1.4E-12 T 26-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RGE_RS01620 17ae598163fcb64eb5ad7c13246f4c27 105 Gene3D G3DSA:3.30.70.330 12 103 3.4E-31 T 26-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 RGE_RS01620 17ae598163fcb64eb5ad7c13246f4c27 105 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 13 103 20.875 T 26-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RGE_RS01620 17ae598163fcb64eb5ad7c13246f4c27 105 PANTHER PTHR11620 14 100 7.0E-23 T 26-04-2016 RGE_RS01620 17ae598163fcb64eb5ad7c13246f4c27 105 Pfam PF00276 Ribosomal protein L23 14 100 9.9E-29 T 26-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RGE_RS01620 17ae598163fcb64eb5ad7c13246f4c27 105 SUPERFAMILY SSF54189 10 97 3.96E-29 T 26-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS10750 7fb34c63fdede409083350bd9199bf1e 183 PANTHER PTHR30333 1 162 8.8E-56 T 26-04-2016 RGE_RS10750 7fb34c63fdede409083350bd9199bf1e 183 PANTHER PTHR30333:SF1 1 162 8.8E-56 T 26-04-2016 RGE_RS10750 7fb34c63fdede409083350bd9199bf1e 183 SUPERFAMILY SSF48695 4 162 9.41E-40 T 26-04-2016 IPR011031 Multihaem cytochrome RGE_RS10750 7fb34c63fdede409083350bd9199bf1e 183 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 2 163 6.7E-56 T 26-04-2016 IPR005126 NapC/NirT cytochrome c, N-terminal RGE_RS10750 7fb34c63fdede409083350bd9199bf1e 183 Gene3D G3DSA:1.10.3820.10 2 162 3.8E-21 T 26-04-2016 RGE_RS10750 7fb34c63fdede409083350bd9199bf1e 183 PIRSF PIRSF000013 1 174 1.8E-59 T 26-04-2016 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 RGE_RS09940 964709cb1e320d2ba76201a7c12224d5 511 Pfam PF03415 Clostripain family 201 369 1.2E-8 T 26-04-2016 IPR005077 Peptidase C11, clostripain RGE_RS19455 087538755a6f57a18cfb1914b3d5ee17 321 Pfam PF01522 Polysaccharide deacetylase 71 184 4.0E-9 T 26-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RGE_RS19455 087538755a6f57a18cfb1914b3d5ee17 321 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 5 309 1.1E-145 T 26-04-2016 IPR017625 Putative urate catabolism protein RGE_RS19455 087538755a6f57a18cfb1914b3d5ee17 321 PANTHER PTHR10587 11 308 1.1E-136 T 26-04-2016 RGE_RS19455 087538755a6f57a18cfb1914b3d5ee17 321 SUPERFAMILY SSF88713 5 310 2.39E-83 T 26-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RGE_RS19455 087538755a6f57a18cfb1914b3d5ee17 321 PANTHER PTHR10587:SF72 11 308 1.1E-136 T 26-04-2016 RGE_RS19455 087538755a6f57a18cfb1914b3d5ee17 321 Gene3D G3DSA:3.20.20.370 4 311 1.7E-96 T 26-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RGE_RS08380 56643a5cc4b7bf2217d873ea5e26134d 188 SUPERFAMILY SSF160930 6 161 1.23E-60 T 26-04-2016 RGE_RS08380 56643a5cc4b7bf2217d873ea5e26134d 188 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 5 164 6.0E-71 T 26-04-2016 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 RGE_RS08380 56643a5cc4b7bf2217d873ea5e26134d 188 Pfam PF05280 Flagellar transcriptional activator (FlhC) 3 171 2.2E-78 T 26-04-2016 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 RGE_RS08380 56643a5cc4b7bf2217d873ea5e26134d 188 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 2 179 43.141 T 26-04-2016 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 RGE_RS08380 56643a5cc4b7bf2217d873ea5e26134d 188 PIRSF PIRSF003159 2 179 1.7E-88 T 26-04-2016 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 RGE_RS02970 5b00759e7acc138bbaf5994ddb816d0e 213 PANTHER PTHR41795 5 200 2.1E-28 T 26-04-2016 RGE_RS02970 5b00759e7acc138bbaf5994ddb816d0e 213 Pfam PF06055 Exopolysaccharide synthesis, ExoD 15 190 8.0E-57 T 26-04-2016 IPR010331 Exopolysaccharide synthesis, ExoD RGE_RS02970 5b00759e7acc138bbaf5994ddb816d0e 213 PIRSF PIRSF033239 3 206 5.1E-66 T 26-04-2016 IPR010331 Exopolysaccharide synthesis, ExoD RGE_RS12550 27ee64b8e6c702ccb2db5de3c2e9c970 265 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 29 240 5.7E-56 T 26-04-2016 IPR017732 Type IV / VI secretion system, DotU RGE_RS12550 27ee64b8e6c702ccb2db5de3c2e9c970 265 PANTHER PTHR38033:SF1 2 252 1.1E-24 T 26-04-2016 RGE_RS12550 27ee64b8e6c702ccb2db5de3c2e9c970 265 PANTHER PTHR38033 2 252 1.1E-24 T 26-04-2016 RGE_RS12550 27ee64b8e6c702ccb2db5de3c2e9c970 265 Pfam PF09850 Type VI secretion system protein DotU 30 234 2.1E-60 T 26-04-2016 IPR017732 Type IV / VI secretion system, DotU RGE_RS02375 3a8c0c386dac96e334fea32c785a4206 289 PIRSF PIRSF028200 1 280 4.7E-52 T 26-04-2016 IPR016875 Uncharacterised conserved protein UCP028200 RGE_RS22215 7547d94ea9750d7c805a27ba53f02dc1 414 Pfam PF07958 Protein of unknown function (DUF1688) 8 414 2.1E-140 T 26-04-2016 IPR012469 Protein of unknown function DUF1688 RGE_RS22215 7547d94ea9750d7c805a27ba53f02dc1 414 PANTHER PTHR31687 8 414 5.0E-134 T 26-04-2016 RGE_RS22215 7547d94ea9750d7c805a27ba53f02dc1 414 PANTHER PTHR31687:SF4 8 414 5.0E-134 T 26-04-2016 RGE_RS17285 57faa1c0307cd03dbecac65bf4ceb85b 222 Pfam PF03975 CheD chemotactic sensory transduction 90 189 1.6E-30 T 26-04-2016 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 RGE_RS17285 57faa1c0307cd03dbecac65bf4ceb85b 222 SUPERFAMILY SSF64438 48 191 2.47E-48 T 26-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic RGE_RS17285 57faa1c0307cd03dbecac65bf4ceb85b 222 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 43 193 27.559 T 26-04-2016 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 RGE_RS17285 57faa1c0307cd03dbecac65bf4ceb85b 222 PANTHER PTHR35147:SF2 22 222 5.6E-75 T 26-04-2016 RGE_RS17285 57faa1c0307cd03dbecac65bf4ceb85b 222 PANTHER PTHR35147 22 222 5.6E-75 T 26-04-2016 RGE_RS00845 ca2b5995e2bfc817397800f1c118e078 162 PANTHER PTHR11592 1 162 1.9E-81 T 26-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RGE_RS00845 ca2b5995e2bfc817397800f1c118e078 162 SUPERFAMILY SSF52833 5 160 8.31E-60 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS00845 ca2b5995e2bfc817397800f1c118e078 162 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 26-04-2016 IPR029759 Glutathione peroxidase active site RGE_RS00845 ca2b5995e2bfc817397800f1c118e078 162 PRINTS PR01011 Glutathione peroxidase family signature 58 74 7.2E-18 T 26-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RGE_RS00845 ca2b5995e2bfc817397800f1c118e078 162 PRINTS PR01011 Glutathione peroxidase family signature 124 133 7.2E-18 T 26-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RGE_RS00845 ca2b5995e2bfc817397800f1c118e078 162 PRINTS PR01011 Glutathione peroxidase family signature 23 40 7.2E-18 T 26-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RGE_RS00845 ca2b5995e2bfc817397800f1c118e078 162 Pfam PF00255 Glutathione peroxidase 7 111 1.8E-37 T 26-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RGE_RS00845 ca2b5995e2bfc817397800f1c118e078 162 PIRSF PIRSF000303 1 162 3.3E-64 T 26-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RGE_RS00845 ca2b5995e2bfc817397800f1c118e078 162 Gene3D G3DSA:3.40.30.10 4 161 8.1E-68 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS04930 6c0f913988dfba81f3ee627394c9e5c0 463 SUPERFAMILY SSF51338 349 463 3.1E-25 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS04930 6c0f913988dfba81f3ee627394c9e5c0 463 Gene3D G3DSA:2.30.40.10 13 64 2.6E-12 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS04930 6c0f913988dfba81f3ee627394c9e5c0 463 SUPERFAMILY SSF51338 1 69 2.28E-10 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS04930 6c0f913988dfba81f3ee627394c9e5c0 463 Gene3D G3DSA:3.20.20.140 65 406 2.3E-88 T 26-04-2016 RGE_RS04930 6c0f913988dfba81f3ee627394c9e5c0 463 Pfam PF01979 Amidohydrolase family 56 436 2.6E-48 T 26-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RGE_RS04930 6c0f913988dfba81f3ee627394c9e5c0 463 SUPERFAMILY SSF51556 59 386 4.92E-81 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS04930 6c0f913988dfba81f3ee627394c9e5c0 463 PANTHER PTHR11271:SF37 30 463 4.3E-93 T 26-04-2016 RGE_RS04930 6c0f913988dfba81f3ee627394c9e5c0 463 PANTHER PTHR11271 30 463 4.3E-93 T 26-04-2016 RGE_RS05075 ef09b619c56bcd876a4b3ea84b8d9b43 118 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 6 92 21.119 T 26-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 RGE_RS05075 ef09b619c56bcd876a4b3ea84b8d9b43 118 PANTHER PTHR21256 6 116 3.6E-38 T 26-04-2016 RGE_RS05075 ef09b619c56bcd876a4b3ea84b8d9b43 118 SUPERFAMILY SSF101386 7 96 4.11E-26 T 26-04-2016 RGE_RS05075 ef09b619c56bcd876a4b3ea84b8d9b43 118 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 10 95 1.9E-16 T 26-04-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 RGE_RS05075 ef09b619c56bcd876a4b3ea84b8d9b43 118 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 9 92 8.3E-32 T 26-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 RGE_RS12530 80920d2464d1c4497543f31454cab671 171 PANTHER PTHR35850 2 168 4.8E-63 T 26-04-2016 RGE_RS12530 80920d2464d1c4497543f31454cab671 171 PANTHER PTHR35850:SF1 2 168 4.8E-63 T 26-04-2016 RGE_RS12530 80920d2464d1c4497543f31454cab671 171 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 12 166 1.5E-59 T 26-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 RGE_RS12530 80920d2464d1c4497543f31454cab671 171 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 167 3.2E-59 T 26-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 RGE_RS12530 80920d2464d1c4497543f31454cab671 171 PIRSF PIRSF028301 2 171 3.1E-64 T 26-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 RGE_RS22765 1b4a4dcb7348537f8c879815af3a741b 305 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 24 278 1.1E-38 T 26-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 RGE_RS22765 1b4a4dcb7348537f8c879815af3a741b 305 PANTHER PTHR34138 10 284 4.0E-58 T 26-04-2016 RGE_RS22765 1b4a4dcb7348537f8c879815af3a741b 305 PANTHER PTHR34138:SF1 10 284 4.0E-58 T 26-04-2016 RGE_RS22765 1b4a4dcb7348537f8c879815af3a741b 305 Pfam PF04085 rod shape-determining protein MreC 132 276 1.6E-33 T 26-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 RGE_RS22765 1b4a4dcb7348537f8c879815af3a741b 305 PIRSF PIRSF038471 11 290 4.2E-60 T 26-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 RGE_RS10535 1765af65d710d187490b7148a584bc2a 573 Pfam PF01368 DHH family 73 212 3.3E-10 T 26-04-2016 IPR001667 DDH domain RGE_RS10535 1765af65d710d187490b7148a584bc2a 573 PANTHER PTHR30255:SF2 17 566 3.8E-172 T 26-04-2016 RGE_RS10535 1765af65d710d187490b7148a584bc2a 573 SUPERFAMILY SSF64182 47 465 5.41E-101 T 26-04-2016 RGE_RS10535 1765af65d710d187490b7148a584bc2a 573 Pfam PF02272 DHHA1 domain 384 452 3.0E-13 T 26-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 RGE_RS10535 1765af65d710d187490b7148a584bc2a 573 PANTHER PTHR30255 17 566 3.8E-172 T 26-04-2016 RGE_RS10535 1765af65d710d187490b7148a584bc2a 573 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 22 566 4.9E-125 T 26-04-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 RGE_RS02875 43ebfda85c7bc8014bf502fcae51bb75 137 PANTHER PTHR33931 13 131 1.4E-33 T 26-04-2016 RGE_RS02875 43ebfda85c7bc8014bf502fcae51bb75 137 PANTHER PTHR33931:SF3 13 131 1.4E-33 T 26-04-2016 RGE_RS02875 43ebfda85c7bc8014bf502fcae51bb75 137 Pfam PF03788 LrgA family 33 125 3.4E-24 T 26-04-2016 IPR005538 LrgA/CidA family GO:0016021 RGE_RS19855 dc25f7f7609005232ea9af876f97d87c 125 Gene3D G3DSA:1.10.760.10 43 111 6.6E-12 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS19855 dc25f7f7609005232ea9af876f97d87c 125 SUPERFAMILY SSF46626 3 113 6.35E-15 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS19855 dc25f7f7609005232ea9af876f97d87c 125 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 36 107 2.4E-10 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS11290 27ca6803000c0833edba21866a2b222c 180 TIGRFAM TIGR03124 citrate_citX: holo-ACP synthase CitX 10 173 8.7E-59 T 26-04-2016 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 RGE_RS11290 27ca6803000c0833edba21866a2b222c 180 Pfam PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 10 173 7.1E-57 T 26-04-2016 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 RGE_RS01405 411327104da4f0685e9b6c751b14ed45 374 PANTHER PTHR36510:SF1 1 373 7.8E-115 T 26-04-2016 RGE_RS01405 411327104da4f0685e9b6c751b14ed45 374 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 14 291 1.2E-55 T 26-04-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RGE_RS01405 411327104da4f0685e9b6c751b14ed45 374 SUPERFAMILY SSF55931 4 368 2.29E-109 T 26-04-2016 RGE_RS01405 411327104da4f0685e9b6c751b14ed45 374 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 374 99.272 T 26-04-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RGE_RS01405 411327104da4f0685e9b6c751b14ed45 374 PANTHER PTHR36510 1 373 7.8E-115 T 26-04-2016 RGE_RS01405 411327104da4f0685e9b6c751b14ed45 374 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 13 297 3.4E-99 T 26-04-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RGE_RS18670 c597f838a3410a067755690d3a78cf8e 77 SUPERFAMILY SSF55729 3 74 7.78E-9 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS18670 c597f838a3410a067755690d3a78cf8e 77 Gene3D G3DSA:3.40.630.30 3 73 1.2E-11 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS16570 29ff76437ab03f94eba24bf0d4cde3d4 306 SUPERFAMILY SSF53686 8 304 4.98E-89 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS16570 29ff76437ab03f94eba24bf0d4cde3d4 306 Gene3D G3DSA:3.40.50.1100 158 305 7.2E-79 T 26-04-2016 RGE_RS16570 29ff76437ab03f94eba24bf0d4cde3d4 306 Gene3D G3DSA:3.40.50.1100 6 51 7.2E-79 T 26-04-2016 RGE_RS16570 29ff76437ab03f94eba24bf0d4cde3d4 306 PANTHER PTHR10314:SF100 9 304 1.2E-157 T 26-04-2016 RGE_RS16570 29ff76437ab03f94eba24bf0d4cde3d4 306 Gene3D G3DSA:3.40.50.1100 52 151 4.5E-38 T 26-04-2016 RGE_RS16570 29ff76437ab03f94eba24bf0d4cde3d4 306 PANTHER PTHR10314 9 304 1.2E-157 T 26-04-2016 RGE_RS16570 29ff76437ab03f94eba24bf0d4cde3d4 306 TIGRFAM TIGR01138 cysM: cysteine synthase B 11 304 1.6E-135 T 26-04-2016 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 RGE_RS16570 29ff76437ab03f94eba24bf0d4cde3d4 306 TIGRFAM TIGR01136 cysKM: cysteine synthase 13 304 4.4E-114 T 26-04-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 RGE_RS16570 29ff76437ab03f94eba24bf0d4cde3d4 306 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 13 293 7.7E-64 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS16570 29ff76437ab03f94eba24bf0d4cde3d4 306 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 42 60 - T 26-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RGE_RS11220 056776969e48e3ab7e195513a4dcff1b 183 PIRSF PIRSF036893 1 183 1.1E-52 T 26-04-2016 IPR022271 Lipocalin, ApoD type RGE_RS11220 056776969e48e3ab7e195513a4dcff1b 183 PRINTS PR01171 Bacterial lipocalin signature 142 153 4.8E-7 T 26-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 RGE_RS11220 056776969e48e3ab7e195513a4dcff1b 183 PRINTS PR01171 Bacterial lipocalin signature 127 135 4.8E-7 T 26-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 RGE_RS11220 056776969e48e3ab7e195513a4dcff1b 183 PRINTS PR01171 Bacterial lipocalin signature 33 47 4.8E-7 T 26-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 RGE_RS11220 056776969e48e3ab7e195513a4dcff1b 183 PANTHER PTHR10612 27 181 1.5E-39 T 26-04-2016 RGE_RS11220 056776969e48e3ab7e195513a4dcff1b 183 SUPERFAMILY SSF50814 27 179 6.23E-38 T 26-04-2016 IPR011038 Calycin-like RGE_RS11220 056776969e48e3ab7e195513a4dcff1b 183 Pfam PF08212 Lipocalin-like domain 33 179 9.6E-46 T 26-04-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain RGE_RS11220 056776969e48e3ab7e195513a4dcff1b 183 Gene3D G3DSA:2.40.128.20 6 180 3.4E-46 T 26-04-2016 IPR012674 Calycin RGE_RS13160 54776737df1bef3e857045b1a69dd8a1 124 Pfam PF00072 Response regulator receiver domain 3 115 2.8E-15 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS13160 54776737df1bef3e857045b1a69dd8a1 124 SUPERFAMILY SSF52172 1 118 3.7E-25 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS13160 54776737df1bef3e857045b1a69dd8a1 124 Gene3D G3DSA:3.40.50.2300 1 119 3.7E-24 T 26-04-2016 RGE_RS13160 54776737df1bef3e857045b1a69dd8a1 124 PANTHER PTHR26402 1 117 2.2E-18 T 26-04-2016 RGE_RS13160 54776737df1bef3e857045b1a69dd8a1 124 SMART SM00448 1 115 2.1E-17 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS15810 ee15f7c9f6161104ee40e5b709bbe79a 416 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 8 410 2.2E-133 T 26-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RGE_RS15810 ee15f7c9f6161104ee40e5b709bbe79a 416 PIRSF PIRSF006066 1 415 9.6E-134 T 26-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RGE_RS15810 ee15f7c9f6161104ee40e5b709bbe79a 416 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 1 407 1.4E-111 T 26-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RGE_RS15810 ee15f7c9f6161104ee40e5b709bbe79a 416 PANTHER PTHR33362 1 415 2.8E-178 T 26-04-2016 RGE_RS15810 ee15f7c9f6161104ee40e5b709bbe79a 416 PANTHER PTHR33362:SF9 1 415 2.8E-178 T 26-04-2016 RGE_RS16025 5b15818eadd4646a7d47064b09defbf9 289 PANTHER PTHR37418:SF2 3 289 1.1E-108 T 26-04-2016 RGE_RS16025 5b15818eadd4646a7d47064b09defbf9 289 Pfam PF05853 beta-keto acid cleavage enzyme 5 287 1.7E-82 T 26-04-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24|UniPathway: UPA00870 RGE_RS16025 5b15818eadd4646a7d47064b09defbf9 289 Gene3D G3DSA:3.20.20.70 4 288 3.5E-91 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS16025 5b15818eadd4646a7d47064b09defbf9 289 PANTHER PTHR37418 3 289 1.1E-108 T 26-04-2016 RGE_RS14765 3b9eb8d55bf5bb58388c988fb0fa6067 490 PANTHER PTHR35565:SF3 15 490 4.1E-221 T 26-04-2016 RGE_RS14765 3b9eb8d55bf5bb58388c988fb0fa6067 490 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 15 485 1.7E-202 T 26-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath RGE_RS14765 3b9eb8d55bf5bb58388c988fb0fa6067 490 PANTHER PTHR35565 15 490 4.1E-221 T 26-04-2016 RGE_RS14765 3b9eb8d55bf5bb58388c988fb0fa6067 490 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 63 485 5.3E-186 T 26-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath RGE_RS17430 335a099e06ad09d8596ab1c6d3bd0272 207 Pfam PF09997 Predicted membrane protein (DUF2238) 41 181 1.3E-54 T 26-04-2016 IPR014509 Uncharacterised conserved protein UCP020606 RGE_RS17430 335a099e06ad09d8596ab1c6d3bd0272 207 PIRSF PIRSF020606 1 203 7.4E-76 T 26-04-2016 IPR014509 Uncharacterised conserved protein UCP020606 RGE_RS22195 b6faba7803a7f8547ef380c9b82f23db 263 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 8 243 9.2E-93 T 26-04-2016 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 RGE_RS22195 b6faba7803a7f8547ef380c9b82f23db 263 PANTHER PTHR39330 1 260 2.8E-98 T 26-04-2016 RGE_RS22195 b6faba7803a7f8547ef380c9b82f23db 263 PIRSF PIRSF018982 1 251 2.7E-96 T 26-04-2016 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 RGE_RS22980 7ec46b10bbd51a5c105386e9affda3e8 154 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 131 151 0.0019 T 26-04-2016 IPR020008 GlyGly-CTERM domain RGE_RS22980 7ec46b10bbd51a5c105386e9affda3e8 154 SUPERFAMILY SSF49313 26 107 2.67E-6 T 26-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 RGE_RS14470 ad36512d3c5b3930f6ebc9877cca4d72 307 PANTHER PTHR11935:SF95 1 234 2.7E-38 T 26-04-2016 RGE_RS14470 ad36512d3c5b3930f6ebc9877cca4d72 307 Pfam PF00753 Metallo-beta-lactamase superfamily 45 232 2.5E-23 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS14470 ad36512d3c5b3930f6ebc9877cca4d72 307 SMART SM00849 47 232 1.2E-17 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS14470 ad36512d3c5b3930f6ebc9877cca4d72 307 Gene3D G3DSA:3.60.15.10 15 258 5.7E-46 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS14470 ad36512d3c5b3930f6ebc9877cca4d72 307 PANTHER PTHR11935 1 234 2.7E-38 T 26-04-2016 RGE_RS14470 ad36512d3c5b3930f6ebc9877cca4d72 307 TIGRFAM TIGR04559 SoxH_rel_PQQ_2: quinoprotein relay system zinc metallohydrolase 2 20 307 8.6E-111 T 26-04-2016 IPR030829 Quinoprotein relay system zinc metallohydrolase 2 RGE_RS14470 ad36512d3c5b3930f6ebc9877cca4d72 307 SUPERFAMILY SSF56281 15 275 5.74E-55 T 26-04-2016 IPR001279 Metallo-beta-lactamase RGE_RS05180 a02d109e01ece364b6acae60271bd404 433 SUPERFAMILY SSF103473 24 416 3.14E-41 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS05180 a02d109e01ece364b6acae60271bd404 433 Gene3D G3DSA:1.20.1250.20 232 412 1.1E-12 T 26-04-2016 RGE_RS05180 a02d109e01ece364b6acae60271bd404 433 PANTHER PTHR23513 6 416 1.2E-48 T 26-04-2016 RGE_RS05180 a02d109e01ece364b6acae60271bd404 433 Gene3D G3DSA:1.20.1250.20 22 209 9.5E-14 T 26-04-2016 RGE_RS05180 a02d109e01ece364b6acae60271bd404 433 Pfam PF05977 Transmembrane secretion effector 21 413 9.8E-24 T 26-04-2016 IPR010290 Transmembrane secretion effector RGE_RS01145 8899fdd36008a5e1bb095a4d07ff660a 283 PANTHER PTHR10091:SF5 6 184 4.4E-27 T 26-04-2016 RGE_RS01145 8899fdd36008a5e1bb095a4d07ff660a 283 SUPERFAMILY SSF74650 7 280 4.77E-48 T 26-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 RGE_RS01145 8899fdd36008a5e1bb095a4d07ff660a 283 Pfam PF01263 Aldose 1-epimerase 7 251 1.1E-29 T 26-04-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 RGE_RS01145 8899fdd36008a5e1bb095a4d07ff660a 283 PANTHER PTHR10091 6 184 4.4E-27 T 26-04-2016 RGE_RS01145 8899fdd36008a5e1bb095a4d07ff660a 283 Gene3D G3DSA:2.70.98.10 7 255 1.3E-15 T 26-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 RGE_RS15165 2eef227fd0b1193c4bca9fd1adbea783 425 SUPERFAMILY SSF82171 49 142 1.22E-5 T 26-04-2016 RGE_RS15165 2eef227fd0b1193c4bca9fd1adbea783 425 SUPERFAMILY SSF82171 186 341 1.22E-5 T 26-04-2016 RGE_RS15705 59a3662fb82f849731449a7dcc8d139a 564 Pfam PF02254 TrkA-N domain 427 541 2.6E-22 T 26-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RGE_RS15705 59a3662fb82f849731449a7dcc8d139a 564 SUPERFAMILY SSF51735 427 554 2.74E-25 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15705 59a3662fb82f849731449a7dcc8d139a 564 Pfam PF00999 Sodium/hydrogen exchanger family 13 384 7.6E-70 T 26-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RGE_RS15705 59a3662fb82f849731449a7dcc8d139a 564 PANTHER PTHR16254:SF17 1 555 1.2E-232 T 26-04-2016 RGE_RS15705 59a3662fb82f849731449a7dcc8d139a 564 PANTHER PTHR16254 1 555 1.2E-232 T 26-04-2016 RGE_RS15705 59a3662fb82f849731449a7dcc8d139a 564 Gene3D G3DSA:3.40.50.720 424 556 5.3E-31 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS14295 eb435eeab69a2b3c5353dfd909656831 346 Gene3D G3DSA:2.40.10.10 217 301 1.5E-6 T 26-04-2016 RGE_RS14295 eb435eeab69a2b3c5353dfd909656831 346 SUPERFAMILY SSF50494 109 305 1.76E-15 T 26-04-2016 IPR009003 Peptidase S1, PA clan RGE_RS14295 eb435eeab69a2b3c5353dfd909656831 346 Pfam PF13365 Trypsin-like peptidase domain 116 282 1.1E-7 T 26-04-2016 RGE_RS05955 ea360eb05b899e709d413d5372c0d073 247 SUPERFAMILY SSF52540 11 186 1.9E-10 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS05955 ea360eb05b899e709d413d5372c0d073 247 PANTHER PTHR11825:SF7 87 244 4.9E-31 T 26-04-2016 RGE_RS05955 ea360eb05b899e709d413d5372c0d073 247 PANTHER PTHR11825 87 244 4.9E-31 T 26-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RGE_RS01290 18dc44386e98455159975ff84717bf45 293 Pfam PF09851 Short C-terminal domain 263 286 6.1E-8 T 26-04-2016 IPR018649 SHOCT domain RGE_RS21060 05a5e88adf16f9e979c0d045cc3e0695 527 Pfam PF07793 Protein of unknown function (DUF1631) 257 403 2.2E-9 T 26-04-2016 IPR012434 Protein of unknown function DUF1631 RGE_RS21060 05a5e88adf16f9e979c0d045cc3e0695 527 Pfam PF07793 Protein of unknown function (DUF1631) 25 219 3.5E-20 T 26-04-2016 IPR012434 Protein of unknown function DUF1631 RGE_RS16095 feaea51214bf588e5f9f4d11793a2aa8 430 SUPERFAMILY SSF56300 43 143 4.6E-23 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS16095 feaea51214bf588e5f9f4d11793a2aa8 430 SUPERFAMILY SSF56300 335 406 4.6E-23 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS16095 feaea51214bf588e5f9f4d11793a2aa8 430 SUPERFAMILY SSF56300 269 280 4.6E-23 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS16095 feaea51214bf588e5f9f4d11793a2aa8 430 Pfam PF00149 Calcineurin-like phosphoesterase 43 187 3.2E-9 T 26-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RGE_RS16095 feaea51214bf588e5f9f4d11793a2aa8 430 Gene3D G3DSA:3.60.21.10 43 190 5.4E-25 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS16095 feaea51214bf588e5f9f4d11793a2aa8 430 Gene3D G3DSA:3.60.21.10 349 406 5.4E-25 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS21415 e7ca7288b51ccca3deabc0c2f9314322 359 PANTHER PTHR10578 9 345 2.2E-124 T 26-04-2016 RGE_RS21415 e7ca7288b51ccca3deabc0c2f9314322 359 PIRSF PIRSF000138 3 358 2.8E-116 T 26-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 RGE_RS21415 e7ca7288b51ccca3deabc0c2f9314322 359 Pfam PF01070 FMN-dependent dehydrogenase 19 356 2.4E-117 T 26-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 RGE_RS21415 e7ca7288b51ccca3deabc0c2f9314322 359 SUPERFAMILY SSF51395 10 351 2.2E-89 T 26-04-2016 RGE_RS21415 e7ca7288b51ccca3deabc0c2f9314322 359 PANTHER PTHR10578:SF65 9 345 2.2E-124 T 26-04-2016 RGE_RS21415 e7ca7288b51ccca3deabc0c2f9314322 359 Gene3D G3DSA:3.20.20.70 10 356 7.8E-121 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS18865 2c7e1a9089fce336db407e5c6e4c0481 164 Pfam PF11454 Protein of unknown function (DUF3016) 30 159 4.4E-34 T 26-04-2016 IPR021557 Protein of unknown function DUF3016 RGE_RS06415 3d2e2ad3f0d4f57d61222ca7644c5c85 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 52 218 7.0E-12 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS06415 3d2e2ad3f0d4f57d61222ca7644c5c85 232 PANTHER PTHR30614 1 229 2.3E-106 T 26-04-2016 RGE_RS06415 3d2e2ad3f0d4f57d61222ca7644c5c85 232 Gene3D G3DSA:1.10.3720.10 25 217 1.4E-31 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS06415 3d2e2ad3f0d4f57d61222ca7644c5c85 232 SUPERFAMILY SSF161098 24 214 1.23E-33 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS06415 3d2e2ad3f0d4f57d61222ca7644c5c85 232 PANTHER PTHR30614:SF5 1 229 2.3E-106 T 26-04-2016 RGE_RS06415 3d2e2ad3f0d4f57d61222ca7644c5c85 232 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 115 4.3E-12 T 26-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RGE_RS18040 bc1b1b1b822d1db8d65029b7f9da1284 679 Gene3D G3DSA:2.120.10.30 190 353 4.4E-38 T 26-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RGE_RS18040 bc1b1b1b822d1db8d65029b7f9da1284 679 Gene3D G3DSA:2.120.10.30 16 133 4.4E-38 T 26-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RGE_RS18040 bc1b1b1b822d1db8d65029b7f9da1284 679 SUPERFAMILY SSF53474 425 669 1.07E-66 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS18040 bc1b1b1b822d1db8d65029b7f9da1284 679 Gene3D G3DSA:3.40.50.1820 425 669 2.6E-67 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS18040 bc1b1b1b822d1db8d65029b7f9da1284 679 SUPERFAMILY SSF82171 164 405 1.11E-38 T 26-04-2016 RGE_RS18040 bc1b1b1b822d1db8d65029b7f9da1284 679 SUPERFAMILY SSF82171 5 135 1.11E-38 T 26-04-2016 RGE_RS18040 bc1b1b1b822d1db8d65029b7f9da1284 679 Pfam PF00326 Prolyl oligopeptidase family 463 669 4.1E-49 T 26-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RGE_RS18040 bc1b1b1b822d1db8d65029b7f9da1284 679 PANTHER PTHR11731:SF150 69 669 1.6E-100 T 26-04-2016 RGE_RS18040 bc1b1b1b822d1db8d65029b7f9da1284 679 PANTHER PTHR11731 69 669 1.6E-100 T 26-04-2016 RGE_RS18040 bc1b1b1b822d1db8d65029b7f9da1284 679 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 509 539 - T 26-04-2016 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 RGE_RS01315 491c7aeac87701bc91e300ba58a6e212 277 SMART SM00448 7 129 5.5E-26 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS01315 491c7aeac87701bc91e300ba58a6e212 277 Gene3D G3DSA:3.40.50.2300 3 140 1.9E-31 T 26-04-2016 RGE_RS01315 491c7aeac87701bc91e300ba58a6e212 277 PANTHER PTHR26402:SF524 7 258 1.7E-44 T 26-04-2016 RGE_RS01315 491c7aeac87701bc91e300ba58a6e212 277 Pfam PF04397 LytTr DNA-binding domain 183 275 5.0E-24 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS01315 491c7aeac87701bc91e300ba58a6e212 277 Gene3D G3DSA:2.40.50.40 173 240 4.5E-16 T 26-04-2016 RGE_RS01315 491c7aeac87701bc91e300ba58a6e212 277 PANTHER PTHR26402 7 258 1.7E-44 T 26-04-2016 RGE_RS01315 491c7aeac87701bc91e300ba58a6e212 277 SMART SM00850 181 277 1.4E-23 T 26-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 RGE_RS01315 491c7aeac87701bc91e300ba58a6e212 277 Pfam PF00072 Response regulator receiver domain 11 129 4.6E-22 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS01315 491c7aeac87701bc91e300ba58a6e212 277 SUPERFAMILY SSF52172 7 141 8.25E-30 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS10970 fad6186a4387ddf471c0b37ed2ad7387 179 SUPERFAMILY SSF52499 2 162 4.58E-46 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS10970 fad6186a4387ddf471c0b37ed2ad7387 179 PANTHER PTHR11080 1 163 5.1E-36 T 26-04-2016 RGE_RS10970 fad6186a4387ddf471c0b37ed2ad7387 179 Pfam PF00857 Isochorismatase family 3 139 1.8E-35 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS10970 fad6186a4387ddf471c0b37ed2ad7387 179 Gene3D G3DSA:3.40.50.850 1 163 1.2E-45 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS04350 2efcb74190e8450fea33622741674b3d 801 SUPERFAMILY SSF52540 259 538 1.09E-9 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04350 2efcb74190e8450fea33622741674b3d 801 SMART SM00382 261 412 1.3E-4 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS04350 2efcb74190e8450fea33622741674b3d 801 Gene3D G3DSA:3.40.50.300 207 417 4.5E-14 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04350 2efcb74190e8450fea33622741674b3d 801 SUPERFAMILY SSF51306 653 785 7.5E-8 T 26-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RGE_RS04350 2efcb74190e8450fea33622741674b3d 801 Pfam PF09848 Uncharacterized conserved protein (DUF2075) 262 607 1.8E-100 T 26-04-2016 IPR018647 Domain of unknown function DUF2075 RGE_RS04350 2efcb74190e8450fea33622741674b3d 801 SUPERFAMILY SSF52540 236 381 3.19E-16 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04350 2efcb74190e8450fea33622741674b3d 801 Gene3D G3DSA:2.10.109.10 654 796 4.6E-12 T 26-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RGE_RS00675 6ac6786a8a9e59cff43e881107f91463 219 SUPERFAMILY SSF100950 4 217 1.08E-71 T 26-04-2016 RGE_RS00675 6ac6786a8a9e59cff43e881107f91463 219 PANTHER PTHR13707:SF39 9 214 2.4E-104 T 26-04-2016 RGE_RS00675 6ac6786a8a9e59cff43e881107f91463 219 Pfam PF01144 Coenzyme A transferase 9 215 5.6E-64 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS00675 6ac6786a8a9e59cff43e881107f91463 219 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 16 217 4.7E-61 T 26-04-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 RGE_RS00675 6ac6786a8a9e59cff43e881107f91463 219 PANTHER PTHR13707 9 214 2.4E-104 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS00675 6ac6786a8a9e59cff43e881107f91463 219 Gene3D G3DSA:3.40.1080.10 10 215 8.3E-74 T 26-04-2016 RGE_RS00675 6ac6786a8a9e59cff43e881107f91463 219 SMART SM00882 5 216 4.4E-65 T 26-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RGE_RS20960 de3a38f7843928bcc54e74bcbafd56c4 101 Pfam PF14697 4Fe-4S dicluster domain 21 93 3.9E-11 T 26-04-2016 RGE_RS20960 de3a38f7843928bcc54e74bcbafd56c4 101 Gene3D G3DSA:3.30.70.20 15 96 1.3E-15 T 26-04-2016 RGE_RS20960 de3a38f7843928bcc54e74bcbafd56c4 101 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 27 38 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS20960 de3a38f7843928bcc54e74bcbafd56c4 101 SUPERFAMILY SSF54862 14 98 3.35E-17 T 26-04-2016 RGE_RS20960 de3a38f7843928bcc54e74bcbafd56c4 101 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 79 90 - T 26-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RGE_RS20960 de3a38f7843928bcc54e74bcbafd56c4 101 TIGRFAM TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific 8 98 1.2E-38 T 26-04-2016 IPR014283 Ferredoxin III 4[4Fe-4S], nif-specific RGE_RS06230 469b4e1b1e24283a3bbd916d9199b237 277 Gene3D G3DSA:3.20.20.410 2 263 3.0E-70 T 26-04-2016 IPR002763 Protein of unknown function DUF72 RGE_RS06230 469b4e1b1e24283a3bbd916d9199b237 277 Pfam PF01904 Protein of unknown function DUF72 22 261 3.0E-52 T 26-04-2016 IPR002763 Protein of unknown function DUF72 RGE_RS06230 469b4e1b1e24283a3bbd916d9199b237 277 SUPERFAMILY SSF117396 4 263 4.58E-67 T 26-04-2016 IPR002763 Protein of unknown function DUF72 RGE_RS06230 469b4e1b1e24283a3bbd916d9199b237 277 PANTHER PTHR30348 237 268 4.3E-93 T 26-04-2016 RGE_RS06230 469b4e1b1e24283a3bbd916d9199b237 277 PANTHER PTHR30348 5 219 4.3E-93 T 26-04-2016 RGE_RS06230 469b4e1b1e24283a3bbd916d9199b237 277 PANTHER PTHR30348:SF7 237 268 4.3E-93 T 26-04-2016 RGE_RS06230 469b4e1b1e24283a3bbd916d9199b237 277 PANTHER PTHR30348:SF7 5 219 4.3E-93 T 26-04-2016 RGE_RS04225 4e32a3ae7a360d8434ea0be2c71d64d8 213 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 211 34.321 T 26-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 RGE_RS04225 4e32a3ae7a360d8434ea0be2c71d64d8 213 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 210 1.3E-59 T 26-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 RGE_RS04225 4e32a3ae7a360d8434ea0be2c71d64d8 213 SUPERFAMILY SSF52317 2 211 4.13E-54 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS04225 4e32a3ae7a360d8434ea0be2c71d64d8 213 Pfam PF00117 Glutamine amidotransferase class-I 6 207 2.4E-14 T 26-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RGE_RS04225 4e32a3ae7a360d8434ea0be2c71d64d8 213 PANTHER PTHR21235 4 213 5.4E-78 T 26-04-2016 RGE_RS04225 4e32a3ae7a360d8434ea0be2c71d64d8 213 PIRSF PIRSF000495 2 213 1.4E-65 T 26-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 RGE_RS04225 4e32a3ae7a360d8434ea0be2c71d64d8 213 PANTHER PTHR21235:SF1 4 213 5.4E-78 T 26-04-2016 RGE_RS04225 4e32a3ae7a360d8434ea0be2c71d64d8 213 Gene3D G3DSA:3.40.50.880 2 211 7.0E-79 T 26-04-2016 IPR029062 Class I glutamine amidotransferase-like RGE_RS05045 31615cbea39c0d47526280d6706350ab 231 Gene3D G3DSA:3.40.50.1000 9 227 1.6E-26 T 26-04-2016 IPR023214 HAD-like domain RGE_RS05045 31615cbea39c0d47526280d6706350ab 231 PANTHER PTHR12725 9 230 2.4E-20 T 26-04-2016 RGE_RS05045 31615cbea39c0d47526280d6706350ab 231 TIGRFAM TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 10 193 6.6E-44 T 26-04-2016 IPR010237 Pyrimidine 5-nucleotidase RGE_RS05045 31615cbea39c0d47526280d6706350ab 231 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 193 7.7E-10 T 26-04-2016 IPR023214 HAD-like domain RGE_RS05045 31615cbea39c0d47526280d6706350ab 231 SUPERFAMILY SSF56784 9 203 1.22E-31 T 26-04-2016 IPR023214 HAD-like domain RGE_RS05045 31615cbea39c0d47526280d6706350ab 231 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 11 194 1.0E-13 T 26-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RGE_RS12360 d12f1b28840493522eb4014e0e440833 217 Pfam PF06821 Serine hydrolase 12 174 9.5E-49 T 26-04-2016 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RGE_RS12360 d12f1b28840493522eb4014e0e440833 217 Gene3D G3DSA:3.40.50.1820 10 175 3.0E-39 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS12360 d12f1b28840493522eb4014e0e440833 217 SUPERFAMILY SSF53474 12 173 3.21E-27 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS18305 95da52a7851b449df16aa4de697d14d4 387 SUPERFAMILY SSF58104 138 336 8.5E-28 T 26-04-2016 RGE_RS18305 95da52a7851b449df16aa4de697d14d4 387 Gene3D G3DSA:1.10.287.950 144 302 2.6E-28 T 26-04-2016 RGE_RS18305 95da52a7851b449df16aa4de697d14d4 387 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 215 244 3.8E-12 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS18305 95da52a7851b449df16aa4de697d14d4 387 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 186 213 3.8E-12 T 26-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RGE_RS18305 95da52a7851b449df16aa4de697d14d4 387 SMART SM00283 104 353 0.0084 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS18305 95da52a7851b449df16aa4de697d14d4 387 PANTHER PTHR32089:SF46 144 243 8.4E-18 T 26-04-2016 RGE_RS18305 95da52a7851b449df16aa4de697d14d4 387 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 165 311 5.8E-22 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS18305 95da52a7851b449df16aa4de697d14d4 387 PANTHER PTHR32089 144 243 8.4E-18 T 26-04-2016 RGE_RS10425 b566fa07a3c2d798069d0453db7f44f9 395 Pfam PF05940 NnrS protein 19 389 2.2E-108 T 26-04-2016 IPR010266 NnrS RGE_RS05760 39957e9844f86235411365da07df4566 163 Gene3D G3DSA:3.20.20.80 58 138 9.9E-4 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 SUPERFAMILY SSF52440 6 98 1.15E-29 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 SUPERFAMILY SSF56059 98 313 8.49E-54 T 26-04-2016 RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 PIRSF PIRSF039102 43 314 3.0E-87 T 26-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 6 309 1.7E-96 T 26-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 Pfam PF01820 D-ala D-ala ligase N-terminus 6 88 4.5E-21 T 26-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 Gene3D G3DSA:3.30.470.20 87 105 2.0E-47 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 Gene3D G3DSA:3.30.470.20 180 309 2.0E-47 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 65 76 - T 26-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 Gene3D G3DSA:3.30.1490.20 110 179 1.3E-19 T 26-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 PANTHER PTHR23132 6 314 1.2E-94 T 26-04-2016 RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 Gene3D G3DSA:3.40.50.20 6 86 1.8E-28 T 26-04-2016 IPR016185 Pre-ATP-grasp domain RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 251 280 - T 26-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 5 310 34.651 T 26-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS04695 ebaaa7aedc0735042a8eeee1ccca7d88 316 Pfam PF07478 D-ala D-ala ligase C-terminus 105 306 7.8E-57 T 26-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 Gene3D G3DSA:3.90.226.10 183 429 1.4E-63 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 SUPERFAMILY SSF50156 93 183 5.65E-20 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 Gene3D G3DSA:3.30.750.44 58 106 1.1E-8 T 26-04-2016 RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 SMART SM00245 173 380 5.1E-61 T 26-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 Pfam PF03572 Peptidase family S41 199 377 5.7E-51 T 26-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 52 384 9.8E-99 T 26-04-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 Pfam PF13180 PDZ domain 101 179 7.9E-16 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 PANTHER PTHR32060 290 447 9.6E-110 T 26-04-2016 RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 PANTHER PTHR32060 55 274 9.6E-110 T 26-04-2016 RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 SMART SM00228 100 171 3.2E-16 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 SUPERFAMILY SSF52096 38 118 1.82E-74 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 SUPERFAMILY SSF52096 192 385 1.82E-74 T 26-04-2016 IPR029045 ClpP/crotonase-like domain RGE_RS18380 d0adee48f94776bc398d6c747faa19e3 479 Gene3D G3DSA:2.30.42.10 107 182 3.4E-30 T 26-04-2016 IPR001478 PDZ domain GO:0005515 RGE_RS19100 0e74b844279c90b1d054165acaf2e945 300 Gene3D G3DSA:3.30.1150.10 196 299 1.5E-18 T 26-04-2016 RGE_RS19100 0e74b844279c90b1d054165acaf2e945 300 SUPERFAMILY SSF74653 212 290 6.28E-12 T 26-04-2016 RGE_RS19100 0e74b844279c90b1d054165acaf2e945 300 TIGRFAM TIGR02794 tolA_full: protein TolA 99 282 1.9E-28 T 26-04-2016 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 RGE_RS19100 0e74b844279c90b1d054165acaf2e945 300 Pfam PF13103 TonB C terminal 214 294 6.1E-15 T 26-04-2016 IPR006260 TonB, C-terminal GO:0006810 RGE_RS20175 5511aa8c29b9fc5512a87a6059d2f90f 183 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 5 182 2.0E-71 T 26-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RGE_RS20175 5511aa8c29b9fc5512a87a6059d2f90f 183 SUPERFAMILY SSF51182 1 182 7.83E-74 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS20175 5511aa8c29b9fc5512a87a6059d2f90f 183 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 182 1.0E-62 T 26-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RGE_RS20175 5511aa8c29b9fc5512a87a6059d2f90f 183 PANTHER PTHR21047 1 183 2.7E-70 T 26-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RGE_RS20175 5511aa8c29b9fc5512a87a6059d2f90f 183 PANTHER PTHR21047:SF2 1 183 2.7E-70 T 26-04-2016 RGE_RS20175 5511aa8c29b9fc5512a87a6059d2f90f 183 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 2 179 9.0E-70 T 26-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RGE_RS20175 5511aa8c29b9fc5512a87a6059d2f90f 183 Gene3D G3DSA:2.60.120.10 1 182 8.3E-78 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS21210 b99bba0de1756b2018ee87c73a8c20d7 451 Pfam PF11067 Protein of unknown function (DUF2868) 160 298 2.4E-15 T 26-04-2016 IPR021296 Protein of unknown function DUF2868 RGE_RS04185 a51dd0efb0ab880f0f5834a0b27c3c9b 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 1.5E-9 T 26-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RGE_RS04185 a51dd0efb0ab880f0f5834a0b27c3c9b 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 1.5E-9 T 26-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RGE_RS04185 a51dd0efb0ab880f0f5834a0b27c3c9b 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 1.5E-9 T 26-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RGE_RS04185 a51dd0efb0ab880f0f5834a0b27c3c9b 256 Pfam PF01061 ABC-2 type transporter 10 219 9.7E-40 T 26-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RGE_RS04185 a51dd0efb0ab880f0f5834a0b27c3c9b 256 PANTHER PTHR30413 11 256 4.3E-66 T 26-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RGE_RS04185 a51dd0efb0ab880f0f5834a0b27c3c9b 256 PANTHER PTHR30413:SF2 11 256 4.3E-66 T 26-04-2016 RGE_RS04185 a51dd0efb0ab880f0f5834a0b27c3c9b 256 PIRSF PIRSF006648 4 253 3.9E-23 T 26-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RGE_RS22290 9936320e3cbb7c63b0bf4d015c760209 84 Gene3D G3DSA:1.10.260.40 10 77 9.4E-17 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS22290 9936320e3cbb7c63b0bf4d015c760209 84 Pfam PF01381 Helix-turn-helix 18 72 2.9E-13 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS22290 9936320e3cbb7c63b0bf4d015c760209 84 SUPERFAMILY SSF47413 7 76 3.38E-15 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS22290 9936320e3cbb7c63b0bf4d015c760209 84 SMART SM00530 17 72 8.2E-12 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS22545 9f715c6933305a50453a071444f90c13 312 PANTHER PTHR30406 12 308 3.6E-162 T 26-04-2016 RGE_RS22545 9f715c6933305a50453a071444f90c13 312 SUPERFAMILY SSF161098 42 293 4.32E-57 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS22545 9f715c6933305a50453a071444f90c13 312 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 43 302 6.3E-126 T 26-04-2016 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 RGE_RS22545 9f715c6933305a50453a071444f90c13 312 PANTHER PTHR30406:SF1 12 308 3.6E-162 T 26-04-2016 RGE_RS22545 9f715c6933305a50453a071444f90c13 312 Gene3D G3DSA:1.10.3720.10 44 302 5.8E-54 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS22545 9f715c6933305a50453a071444f90c13 312 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 44 300 1.1E-100 T 26-04-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 RGE_RS22545 9f715c6933305a50453a071444f90c13 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 302 5.2E-19 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS22775 b660081551578318d13206fa9b212401 99 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 99 22.195 T 26-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RGE_RS22775 b660081551578318d13206fa9b212401 99 SUPERFAMILY SSF141000 3 97 2.48E-26 T 26-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RGE_RS22775 b660081551578318d13206fa9b212401 99 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 94 8.5E-18 T 26-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RGE_RS22775 b660081551578318d13206fa9b212401 99 PANTHER PTHR15004:SF0 1 99 1.5E-28 T 26-04-2016 RGE_RS22775 b660081551578318d13206fa9b212401 99 PANTHER PTHR15004 1 99 1.5E-28 T 26-04-2016 RGE_RS22775 b660081551578318d13206fa9b212401 99 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 5 99 3.8E-27 T 26-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RGE_RS04110 f3ffd05b2e75fb535d90105ca0f2c094 531 Pfam PF13401 AAA domain 42 172 6.9E-23 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS04110 f3ffd05b2e75fb535d90105ca0f2c094 531 PANTHER PTHR35894:SF2 2 298 2.1E-110 T 26-04-2016 RGE_RS04110 f3ffd05b2e75fb535d90105ca0f2c094 531 SMART SM00382 42 191 2.9E-6 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS04110 f3ffd05b2e75fb535d90105ca0f2c094 531 SUPERFAMILY SSF52540 5 265 6.19E-42 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04110 f3ffd05b2e75fb535d90105ca0f2c094 531 Gene3D G3DSA:3.40.50.300 27 184 2.1E-21 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04110 f3ffd05b2e75fb535d90105ca0f2c094 531 PANTHER PTHR35894 2 298 2.1E-110 T 26-04-2016 RGE_RS15670 bb0d6b46aaa63464a541c1d521e38573 338 Gene3D G3DSA:3.40.1730.10 18 176 8.0E-30 T 26-04-2016 RGE_RS15670 bb0d6b46aaa63464a541c1d521e38573 338 Gene3D G3DSA:3.40.1730.10 212 235 8.0E-30 T 26-04-2016 RGE_RS15670 bb0d6b46aaa63464a541c1d521e38573 338 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 18 135 1.3E-21 T 26-04-2016 IPR017748 Type VI secretion system-associated, BMAA0400 RGE_RS15670 bb0d6b46aaa63464a541c1d521e38573 338 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 18 144 4.9E-28 T 26-04-2016 IPR017748 Type VI secretion system-associated, BMAA0400 RGE_RS11850 2be0592b121f5c83770d8f6d234ce389 341 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 282 2.4E-35 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS11850 2be0592b121f5c83770d8f6d234ce389 341 PANTHER PTHR11795:SF379 1 128 7.0E-65 T 26-04-2016 RGE_RS11850 2be0592b121f5c83770d8f6d234ce389 341 PANTHER PTHR11795:SF379 153 287 7.0E-65 T 26-04-2016 RGE_RS11850 2be0592b121f5c83770d8f6d234ce389 341 PANTHER PTHR11795:SF379 315 339 7.0E-65 T 26-04-2016 RGE_RS11850 2be0592b121f5c83770d8f6d234ce389 341 PANTHER PTHR11795 1 128 7.0E-65 T 26-04-2016 RGE_RS11850 2be0592b121f5c83770d8f6d234ce389 341 PANTHER PTHR11795 153 287 7.0E-65 T 26-04-2016 RGE_RS11850 2be0592b121f5c83770d8f6d234ce389 341 PANTHER PTHR11795 315 339 7.0E-65 T 26-04-2016 RGE_RS17475 35e85226d70f9b81bfdceb93c79c1950 291 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 56 158 1.8E-10 T 26-04-2016 IPR006894 HupH hydrogenase expression protein, C-terminal RGE_RS17475 35e85226d70f9b81bfdceb93c79c1950 291 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 171 288 1.6E-49 T 26-04-2016 IPR006894 HupH hydrogenase expression protein, C-terminal RGE_RS17475 35e85226d70f9b81bfdceb93c79c1950 291 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 79 154 4.0E-9 T 26-04-2016 IPR006894 HupH hydrogenase expression protein, C-terminal RGE_RS17475 35e85226d70f9b81bfdceb93c79c1950 291 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 171 288 5.0E-40 T 26-04-2016 IPR006894 HupH hydrogenase expression protein, C-terminal RGE_RS19700 34ade3d22c2935e7a5bf65ed36e2938b 199 Gene3D G3DSA:3.40.1160.10 1 70 1.5E-4 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS19700 34ade3d22c2935e7a5bf65ed36e2938b 199 SUPERFAMILY SSF53633 1 142 9.35E-10 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS19700 34ade3d22c2935e7a5bf65ed36e2938b 199 Pfam PF00696 Amino acid kinase family 2 141 5.0E-8 T 26-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RGE_RS01840 7c5df72d2903c3c23c6c81483377f083 309 PANTHER PTHR34697:SF2 1 300 1.7E-34 T 26-04-2016 RGE_RS01840 7c5df72d2903c3c23c6c81483377f083 309 PANTHER PTHR34697 1 300 1.7E-34 T 26-04-2016 RGE_RS01840 7c5df72d2903c3c23c6c81483377f083 309 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 9 289 2.0E-12 T 26-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD RGE_RS15935 f676814f77077f1f408f9e495628ebe2 145 Pfam PF00075 RNase H 2 141 1.1E-52 T 26-04-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 RGE_RS15935 f676814f77077f1f408f9e495628ebe2 145 Gene3D G3DSA:3.30.420.10 2 142 2.6E-62 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS15935 f676814f77077f1f408f9e495628ebe2 145 PANTHER PTHR10642 2 145 1.2E-63 T 26-04-2016 RGE_RS15935 f676814f77077f1f408f9e495628ebe2 145 SUPERFAMILY SSF53098 1 141 3.41E-60 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS15935 f676814f77077f1f408f9e495628ebe2 145 Hamap MF_00042 Ribonuclease H [rnhA]. 1 144 33.125 T 26-04-2016 IPR022892 Ribonuclease H GO:0004523 RGE_RS22155 46bf61836511fc117327887cf370ffb3 482 Gene3D G3DSA:3.40.630.10 419 481 4.5E-46 T 26-04-2016 RGE_RS22155 46bf61836511fc117327887cf370ffb3 482 Gene3D G3DSA:3.40.630.10 18 221 4.5E-46 T 26-04-2016 RGE_RS22155 46bf61836511fc117327887cf370ffb3 482 Gene3D G3DSA:3.30.70.360 222 383 1.7E-26 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS22155 46bf61836511fc117327887cf370ffb3 482 PANTHER PTHR11014 305 482 4.7E-184 T 26-04-2016 RGE_RS22155 46bf61836511fc117327887cf370ffb3 482 PANTHER PTHR11014 12 289 4.7E-184 T 26-04-2016 RGE_RS22155 46bf61836511fc117327887cf370ffb3 482 PANTHER PTHR11014:SF88 305 482 4.7E-184 T 26-04-2016 RGE_RS22155 46bf61836511fc117327887cf370ffb3 482 PANTHER PTHR11014:SF88 12 289 4.7E-184 T 26-04-2016 RGE_RS22155 46bf61836511fc117327887cf370ffb3 482 SUPERFAMILY SSF53187 395 480 4.92E-45 T 26-04-2016 RGE_RS22155 46bf61836511fc117327887cf370ffb3 482 SUPERFAMILY SSF53187 16 211 4.92E-45 T 26-04-2016 RGE_RS22155 46bf61836511fc117327887cf370ffb3 482 Pfam PF01546 Peptidase family M20/M25/M40 97 478 3.4E-19 T 26-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RGE_RS22155 46bf61836511fc117327887cf370ffb3 482 Pfam PF07687 Peptidase dimerisation domain 209 373 4.6E-13 T 26-04-2016 IPR011650 Peptidase M20, dimerisation domain RGE_RS19535 eca6eb21173aa67d38e32d67db5a9fe5 308 PANTHER PTHR32196 10 307 5.1E-99 T 26-04-2016 RGE_RS19535 eca6eb21173aa67d38e32d67db5a9fe5 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 282 3.2E-36 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS19535 eca6eb21173aa67d38e32d67db5a9fe5 308 PANTHER PTHR32196:SF33 10 307 5.1E-99 T 26-04-2016 RGE_RS10565 8278b6b03961fdac86a163a850b4ee6c 276 Pfam PF01026 TatD related DNase 3 263 2.8E-53 T 26-04-2016 IPR001130 TatD family GO:0016788 RGE_RS10565 8278b6b03961fdac86a163a850b4ee6c 276 SUPERFAMILY SSF51556 2 263 1.33E-65 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS10565 8278b6b03961fdac86a163a850b4ee6c 276 PANTHER PTHR10060 1 268 3.0E-65 T 26-04-2016 IPR001130 TatD family GO:0016788 RGE_RS10565 8278b6b03961fdac86a163a850b4ee6c 276 Gene3D G3DSA:3.20.20.140 1 262 7.4E-65 T 26-04-2016 RGE_RS10565 8278b6b03961fdac86a163a850b4ee6c 276 PIRSF PIRSF005902 1 267 5.2E-48 T 26-04-2016 IPR001130 TatD family GO:0016788 RGE_RS12800 478d2cb22cacd041fcde19ce25752a11 498 Gene3D G3DSA:3.40.309.10 279 466 5.9E-68 T 26-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RGE_RS12800 478d2cb22cacd041fcde19ce25752a11 498 Gene3D G3DSA:3.40.605.10 20 278 2.6E-94 T 26-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RGE_RS12800 478d2cb22cacd041fcde19ce25752a11 498 SUPERFAMILY SSF53720 16 495 1.27E-168 T 26-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RGE_RS12800 478d2cb22cacd041fcde19ce25752a11 498 PANTHER PTHR11699 1 495 2.8E-275 T 26-04-2016 RGE_RS12800 478d2cb22cacd041fcde19ce25752a11 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 293 304 - T 26-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RGE_RS12800 478d2cb22cacd041fcde19ce25752a11 498 PANTHER PTHR11699:SF210 1 495 2.8E-275 T 26-04-2016 RGE_RS12800 478d2cb22cacd041fcde19ce25752a11 498 Pfam PF00171 Aldehyde dehydrogenase family 32 490 1.4E-169 T 26-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RGE_RS04780 efb5fa709ca3c9dedd5fe7f433d62e60 234 SUPERFAMILY SSF53597 2 226 2.32E-18 T 26-04-2016 IPR024072 Dihydrofolate reductase-like domain RGE_RS04780 efb5fa709ca3c9dedd5fe7f433d62e60 234 Pfam PF01872 RibD C-terminal domain 119 211 6.7E-17 T 26-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RGE_RS04780 efb5fa709ca3c9dedd5fe7f433d62e60 234 Gene3D G3DSA:3.40.430.10 2 227 7.7E-21 T 26-04-2016 IPR024072 Dihydrofolate reductase-like domain RGE_RS22660 4e00eb118b8fe19d9b24bc6bc64c3ca2 585 Pfam PF04932 O-Antigen ligase 206 351 2.5E-19 T 26-04-2016 IPR007016 O-antigen ligase-related RGE_RS22660 4e00eb118b8fe19d9b24bc6bc64c3ca2 585 Pfam PF15864 Protein glycosylation ligase 162 186 7.6E-8 T 26-04-2016 IPR031726 Protein glycosylation ligase domain RGE_RS22660 4e00eb118b8fe19d9b24bc6bc64c3ca2 585 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 383 544 3.8E-17 T 26-04-2016 IPR021797 Virulence factor membrane-bound polymerase, C-terminal RGE_RS04575 ecfc8484d286d47f54d3f77fb28a5729 295 SMART SM00062 30 261 4.3E-48 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS04575 ecfc8484d286d47f54d3f77fb28a5729 295 PANTHER PTHR30085 5 286 2.9E-85 T 26-04-2016 RGE_RS04575 ecfc8484d286d47f54d3f77fb28a5729 295 SUPERFAMILY SSF53850 3 262 9.28E-60 T 26-04-2016 RGE_RS04575 ecfc8484d286d47f54d3f77fb28a5729 295 Gene3D G3DSA:3.40.190.10 27 114 4.1E-25 T 26-04-2016 RGE_RS04575 ecfc8484d286d47f54d3f77fb28a5729 295 Gene3D G3DSA:3.40.190.10 222 263 4.1E-25 T 26-04-2016 RGE_RS04575 ecfc8484d286d47f54d3f77fb28a5729 295 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 259 3.4E-46 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS04575 ecfc8484d286d47f54d3f77fb28a5729 295 PANTHER PTHR30085:SF2 5 286 2.9E-85 T 26-04-2016 RGE_RS04575 ecfc8484d286d47f54d3f77fb28a5729 295 Gene3D G3DSA:3.40.190.10 115 221 4.3E-28 T 26-04-2016 RGE_RS13040 9eb593c425dfd9c8ef273312a97313f3 276 Pfam PF07589 PEP-CTERM motif 251 274 2.5E-5 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS12195 7e1be4c649454a33e9b8f70bafde0970 159 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 31 135 4.7E-11 T 26-04-2016 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III RGE_RS04315 94b908a11d3e7965563e8bb17e597b1d 307 Pfam PF03668 P-loop ATPase protein family 22 305 4.2E-90 T 26-04-2016 IPR005337 RapZ-like family GO:0005524 RGE_RS04315 94b908a11d3e7965563e8bb17e597b1d 307 Gene3D G3DSA:3.40.50.300 22 177 4.2E-12 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04315 94b908a11d3e7965563e8bb17e597b1d 307 PANTHER PTHR30448 13 306 3.5E-115 T 26-04-2016 RGE_RS04315 94b908a11d3e7965563e8bb17e597b1d 307 PANTHER PTHR30448:SF0 13 306 3.5E-115 T 26-04-2016 RGE_RS04315 94b908a11d3e7965563e8bb17e597b1d 307 PIRSF PIRSF005052 21 307 3.1E-102 T 26-04-2016 IPR005337 RapZ-like family GO:0005524 RGE_RS04315 94b908a11d3e7965563e8bb17e597b1d 307 SUPERFAMILY SSF52540 20 176 1.46E-9 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS04315 94b908a11d3e7965563e8bb17e597b1d 307 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 21 305 38.903 T 26-04-2016 IPR005337 RapZ-like family GO:0005524 RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 7.0E-17 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 7.0E-17 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 7.0E-17 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.0E-17 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 7.0E-17 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 PANTHER PTHR24322 12 146 1.8E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 PANTHER PTHR24322 162 196 1.8E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 Gene3D G3DSA:3.40.50.720 7 257 3.6E-59 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 Pfam PF00106 short chain dehydrogenase 9 204 1.1E-39 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 SUPERFAMILY SSF51735 2 259 1.91E-57 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 4.3E-6 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 4.3E-6 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS11910 daedadd530ed2185ae6de9fb0b978ad8 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 4.3E-6 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS04165 2c632659333a60d7026ee5b6bb4786b7 484 SUPERFAMILY SSF52777 271 463 2.11E-5 T 26-04-2016 RGE_RS04165 2c632659333a60d7026ee5b6bb4786b7 484 PANTHER PTHR31650:SF1 245 467 5.9E-93 T 26-04-2016 RGE_RS04165 2c632659333a60d7026ee5b6bb4786b7 484 PANTHER PTHR31650:SF1 5 218 5.9E-93 T 26-04-2016 RGE_RS04165 2c632659333a60d7026ee5b6bb4786b7 484 SUPERFAMILY SSF52777 19 149 9.12E-10 T 26-04-2016 RGE_RS04165 2c632659333a60d7026ee5b6bb4786b7 484 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 8 283 1.8E-31 T 26-04-2016 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 RGE_RS04165 2c632659333a60d7026ee5b6bb4786b7 484 Pfam PF06974 Protein of unknown function (DUF1298) 326 467 7.6E-38 T 26-04-2016 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 RGE_RS04165 2c632659333a60d7026ee5b6bb4786b7 484 PANTHER PTHR31650 245 467 5.9E-93 T 26-04-2016 RGE_RS04165 2c632659333a60d7026ee5b6bb4786b7 484 PANTHER PTHR31650 5 218 5.9E-93 T 26-04-2016 RGE_RS04165 2c632659333a60d7026ee5b6bb4786b7 484 Gene3D G3DSA:3.30.559.10 93 154 2.9E-4 T 26-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RGE_RS04165 2c632659333a60d7026ee5b6bb4786b7 484 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 8 468 1.3E-111 T 26-04-2016 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20|UniPathway: UPA00282 RGE_RS10365 e015b508e35ef09b4fb53a82b085ee26 118 Gene3D G3DSA:1.20.1300.10 2 116 2.0E-39 T 26-04-2016 RGE_RS10365 e015b508e35ef09b4fb53a82b085ee26 118 Pfam PF02313 Fumarate reductase subunit D 1 113 5.6E-42 T 26-04-2016 IPR003418 Fumarate reductase, D subunit GO:0006106|GO:0016020 RGE_RS10365 e015b508e35ef09b4fb53a82b085ee26 118 SUPERFAMILY SSF81343 2 116 7.85E-33 T 26-04-2016 RGE_RS10365 e015b508e35ef09b4fb53a82b085ee26 118 PIRSF PIRSF000179 1 116 1.9E-38 T 26-04-2016 IPR003418 Fumarate reductase, D subunit GO:0006106|GO:0016020 RGE_RS10365 e015b508e35ef09b4fb53a82b085ee26 118 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 1 109 2.0E-17 T 26-04-2016 IPR003418 Fumarate reductase, D subunit GO:0006106|GO:0016020 RGE_RS00110 4b68721172275c180dec48ad0120270c 429 PANTHER PTHR11851 10 416 1.7E-90 T 26-04-2016 RGE_RS00110 4b68721172275c180dec48ad0120270c 429 Gene3D G3DSA:3.30.830.10 11 221 3.6E-50 T 26-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RGE_RS00110 4b68721172275c180dec48ad0120270c 429 SUPERFAMILY SSF63411 12 216 3.32E-47 T 26-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RGE_RS00110 4b68721172275c180dec48ad0120270c 429 Pfam PF00675 Insulinase (Peptidase family M16) 23 170 2.3E-32 T 26-04-2016 IPR011765 Peptidase M16, N-terminal RGE_RS00110 4b68721172275c180dec48ad0120270c 429 Gene3D G3DSA:3.30.830.10 230 414 1.6E-27 T 26-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RGE_RS00110 4b68721172275c180dec48ad0120270c 429 SUPERFAMILY SSF63411 232 415 2.0E-26 T 26-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RGE_RS00110 4b68721172275c180dec48ad0120270c 429 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 44 67 - T 26-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RGE_RS00110 4b68721172275c180dec48ad0120270c 429 Pfam PF05193 Peptidase M16 inactive domain 179 348 3.6E-23 T 26-04-2016 IPR007863 Peptidase M16, C-terminal RGE_RS17855 68bbb558c72ee6ff542ae728278a4129 384 PIRSF PIRSF000138 2 381 1.2E-125 T 26-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 RGE_RS17855 68bbb558c72ee6ff542ae728278a4129 384 PANTHER PTHR10578:SF76 1 380 8.7E-225 T 26-04-2016 RGE_RS17855 68bbb558c72ee6ff542ae728278a4129 384 SUPERFAMILY SSF51395 5 376 4.46E-105 T 26-04-2016 RGE_RS17855 68bbb558c72ee6ff542ae728278a4129 384 Gene3D G3DSA:3.20.20.70 5 376 3.7E-141 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS17855 68bbb558c72ee6ff542ae728278a4129 384 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 274 280 - T 26-04-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 RGE_RS17855 68bbb558c72ee6ff542ae728278a4129 384 Pfam PF01070 FMN-dependent dehydrogenase 14 376 1.5E-135 T 26-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 RGE_RS17855 68bbb558c72ee6ff542ae728278a4129 384 PANTHER PTHR10578 1 380 8.7E-225 T 26-04-2016 RGE_RS00760 c3b5cccbfcc8ca7083b69fac00795051 322 PANTHER PTHR10794 7 319 1.7E-47 T 26-04-2016 RGE_RS00760 c3b5cccbfcc8ca7083b69fac00795051 322 Gene3D G3DSA:3.40.50.1820 249 321 3.2E-25 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00760 c3b5cccbfcc8ca7083b69fac00795051 322 Gene3D G3DSA:3.40.50.1820 57 174 3.2E-25 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00760 c3b5cccbfcc8ca7083b69fac00795051 322 PIRSF PIRSF005211 1 322 3.0E-92 T 26-04-2016 IPR012020 AB hydrolase 4 family KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- RGE_RS00760 c3b5cccbfcc8ca7083b69fac00795051 322 Pfam PF00561 alpha/beta hydrolase fold 60 302 1.0E-7 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS00760 c3b5cccbfcc8ca7083b69fac00795051 322 SUPERFAMILY SSF53474 49 320 9.27E-34 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS08065 7cbaaec90eb9ff385edefc9b65d871ea 102 PANTHER PTHR10245 1 100 9.0E-12 T 26-04-2016 RGE_RS08065 7cbaaec90eb9ff385edefc9b65d871ea 102 Gene3D G3DSA:1.10.260.40 2 66 8.5E-17 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS08065 7cbaaec90eb9ff385edefc9b65d871ea 102 SMART SM00530 5 60 1.7E-11 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS08065 7cbaaec90eb9ff385edefc9b65d871ea 102 SUPERFAMILY SSF47413 2 67 3.49E-15 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS08065 7cbaaec90eb9ff385edefc9b65d871ea 102 Pfam PF01381 Helix-turn-helix 7 56 1.5E-11 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS07830 7dabcdae9f9929d6059b09a015fec206 416 PANTHER PTHR30061:SF22 21 415 2.7E-105 T 26-04-2016 RGE_RS07830 7dabcdae9f9929d6059b09a015fec206 416 Gene3D G3DSA:3.40.190.10 159 333 9.7E-28 T 26-04-2016 RGE_RS07830 7dabcdae9f9929d6059b09a015fec206 416 Pfam PF01547 Bacterial extracellular solute-binding protein 38 326 3.7E-24 T 26-04-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 RGE_RS07830 7dabcdae9f9929d6059b09a015fec206 416 PANTHER PTHR30061 21 415 2.7E-105 T 26-04-2016 RGE_RS07830 7dabcdae9f9929d6059b09a015fec206 416 Gene3D G3DSA:3.40.190.10 29 158 3.9E-8 T 26-04-2016 RGE_RS07830 7dabcdae9f9929d6059b09a015fec206 416 SUPERFAMILY SSF53850 22 415 3.26E-64 T 26-04-2016 RGE_RS21520 58645f0228c6cb85447f616a028b224e 91 ProDom PD061650 JHP0447 HP0495 CJ0253 12 91 0.001 T 26-04-2016 RGE_RS21520 58645f0228c6cb85447f616a028b224e 91 Gene3D G3DSA:3.30.70.1460 7 91 2.0E-29 T 26-04-2016 IPR027471 YbeD-like domain RGE_RS21520 58645f0228c6cb85447f616a028b224e 91 PANTHER PTHR38036:SF1 1 91 5.3E-19 T 26-04-2016 RGE_RS21520 58645f0228c6cb85447f616a028b224e 91 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 3 91 21.149 T 26-04-2016 IPR007454 Uncharacterised protein family UPF0250 RGE_RS21520 58645f0228c6cb85447f616a028b224e 91 Pfam PF04359 Protein of unknown function (DUF493) 9 91 1.5E-28 T 26-04-2016 IPR007454 Uncharacterised protein family UPF0250 RGE_RS21520 58645f0228c6cb85447f616a028b224e 91 SUPERFAMILY SSF117991 7 91 3.79E-25 T 26-04-2016 IPR027471 YbeD-like domain RGE_RS21520 58645f0228c6cb85447f616a028b224e 91 PANTHER PTHR38036 1 91 5.3E-19 T 26-04-2016 RGE_RS01260 30510c3f5e98876bd2cc1df81c388a61 158 Pfam PF03714 Bacterial pullanase-associated domain 36 147 4.2E-24 T 26-04-2016 IPR005323 Bacterial pullanase-associated domain GO:0005975|GO:0030246 RGE_RS01260 30510c3f5e98876bd2cc1df81c388a61 158 SUPERFAMILY SSF49452 23 147 1.37E-26 T 26-04-2016 IPR013784 Carbohydrate-binding-like fold GO:0030246 RGE_RS02300 240adac968b0360f6a27ede0406b7973 300 PANTHER PTHR11609 9 297 2.1E-130 T 26-04-2016 RGE_RS02300 240adac968b0360f6a27ede0406b7973 300 PANTHER PTHR11609:SF6 9 297 2.1E-130 T 26-04-2016 RGE_RS02300 240adac968b0360f6a27ede0406b7973 300 Gene3D G3DSA:3.30.470.20 119 248 7.2E-56 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS02300 240adac968b0360f6a27ede0406b7973 300 Gene3D G3DSA:3.30.200.20 5 118 1.3E-43 T 26-04-2016 RGE_RS02300 240adac968b0360f6a27ede0406b7973 300 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 13 298 25.565 T 26-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RGE_RS02300 240adac968b0360f6a27ede0406b7973 300 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 16 296 1.2E-72 T 26-04-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RGE_RS02300 240adac968b0360f6a27ede0406b7973 300 SUPERFAMILY SSF56104 5 297 1.99E-99 T 26-04-2016 RGE_RS02300 240adac968b0360f6a27ede0406b7973 300 ProSitePatterns PS01058 SAICAR synthetase signature 2. 205 213 - T 26-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RGE_RS02300 240adac968b0360f6a27ede0406b7973 300 Pfam PF01259 SAICAR synthetase 15 263 2.8E-100 T 26-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RGE_RS20090 b6e1f2854494d917f6f4dcc2024cedba 350 PIRSF PIRSF002465 1 339 8.3E-117 T 26-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 RGE_RS20090 b6e1f2854494d917f6f4dcc2024cedba 350 SUPERFAMILY SSF53659 2 336 5.35E-96 T 26-04-2016 RGE_RS20090 b6e1f2854494d917f6f4dcc2024cedba 350 Pfam PF02504 Fatty acid synthesis protein 2 323 4.9E-96 T 26-04-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 UniPathway: UPA00085 RGE_RS20090 b6e1f2854494d917f6f4dcc2024cedba 350 PANTHER PTHR30100 1 342 7.6E-120 T 26-04-2016 RGE_RS20090 b6e1f2854494d917f6f4dcc2024cedba 350 Gene3D G3DSA:3.40.718.10 2 334 1.5E-125 T 26-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RGE_RS20090 b6e1f2854494d917f6f4dcc2024cedba 350 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 2 335 6.5E-97 T 26-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 RGE_RS20090 b6e1f2854494d917f6f4dcc2024cedba 350 PANTHER PTHR30100:SF1 1 342 7.6E-120 T 26-04-2016 RGE_RS20090 b6e1f2854494d917f6f4dcc2024cedba 350 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 340 143.49 T 26-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 RGE_RS19835 1eb2b75c44877110921eca1fb17260a4 324 Gene3D G3DSA:2.130.10.10 21 315 2.3E-56 T 26-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RGE_RS19835 1eb2b75c44877110921eca1fb17260a4 324 SUPERFAMILY SSF50974 12 317 3.14E-56 T 26-04-2016 IPR011045 Nitrous oxide reductase, N-terminal RGE_RS19835 1eb2b75c44877110921eca1fb17260a4 324 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 31 64 3.0E-10 T 26-04-2016 IPR011964 YVTN beta-propeller repeat RGE_RS19835 1eb2b75c44877110921eca1fb17260a4 324 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 198 233 1.9E-10 T 26-04-2016 IPR011964 YVTN beta-propeller repeat RGE_RS19835 1eb2b75c44877110921eca1fb17260a4 324 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 238 275 1.4E-8 T 26-04-2016 IPR011964 YVTN beta-propeller repeat RGE_RS19835 1eb2b75c44877110921eca1fb17260a4 324 PANTHER PTHR13833 29 264 1.1E-23 T 26-04-2016 RGE_RS07035 ffc4b85db97d17c69f375c3b75452363 127 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 116 3.7E-23 T 26-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RGE_RS07035 ffc4b85db97d17c69f375c3b75452363 127 TIGRFAM TIGR00494 crcB: protein CrcB 6 117 7.7E-30 T 26-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RGE_RS07035 ffc4b85db97d17c69f375c3b75452363 127 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 17.993 T 26-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RGE_RS07035 ffc4b85db97d17c69f375c3b75452363 127 PANTHER PTHR28259 8 125 6.9E-32 T 26-04-2016 RGE_RS23335 db7b617ed4980c73a1ea6642b5736897 614 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 418 603 3.9E-46 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS23335 db7b617ed4980c73a1ea6642b5736897 614 SMART SM00283 357 604 5.4E-63 T 26-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RGE_RS23335 db7b617ed4980c73a1ea6642b5736897 614 PANTHER PTHR32089:SF63 339 607 5.0E-78 T 26-04-2016 RGE_RS23335 db7b617ed4980c73a1ea6642b5736897 614 SUPERFAMILY SSF58104 332 605 5.67E-54 T 26-04-2016 RGE_RS23335 db7b617ed4980c73a1ea6642b5736897 614 Gene3D G3DSA:1.10.287.950 372 575 2.8E-45 T 26-04-2016 RGE_RS23335 db7b617ed4980c73a1ea6642b5736897 614 PANTHER PTHR32089 339 607 5.0E-78 T 26-04-2016 RGE_RS18775 0e24474882aefc7e5849c7d39820b39a 306 Gene3D G3DSA:3.40.190.10 180 264 3.7E-21 T 26-04-2016 RGE_RS18775 0e24474882aefc7e5849c7d39820b39a 306 Gene3D G3DSA:1.10.10.10 8 89 5.7E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18775 0e24474882aefc7e5849c7d39820b39a 306 PANTHER PTHR30537:SF1 1 295 3.5E-92 T 26-04-2016 RGE_RS18775 0e24474882aefc7e5849c7d39820b39a 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 7.28E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS18775 0e24474882aefc7e5849c7d39820b39a 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 7.28E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS18775 0e24474882aefc7e5849c7d39820b39a 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 7.28E-5 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS18775 0e24474882aefc7e5849c7d39820b39a 306 PANTHER PTHR30537 1 295 3.5E-92 T 26-04-2016 RGE_RS18775 0e24474882aefc7e5849c7d39820b39a 306 SUPERFAMILY SSF46785 9 114 1.13E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18775 0e24474882aefc7e5849c7d39820b39a 306 Pfam PF03466 LysR substrate binding domain 90 296 4.5E-36 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS18775 0e24474882aefc7e5849c7d39820b39a 306 Gene3D G3DSA:3.40.190.10 94 179 6.1E-17 T 26-04-2016 RGE_RS18775 0e24474882aefc7e5849c7d39820b39a 306 SUPERFAMILY SSF53850 91 299 9.41E-39 T 26-04-2016 RGE_RS18775 0e24474882aefc7e5849c7d39820b39a 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 4.0E-18 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS00165 1679a1d1483d52343ec7b91a0238e33d 192 Pfam PF07298 NnrU protein 4 190 7.6E-60 T 26-04-2016 IPR009915 NnrU domain RGE_RS01800 6bf4962df48982c5b5f11c8cc79f0284 228 SUPERFAMILY SSF51161 98 221 1.8E-27 T 26-04-2016 IPR011004 Trimeric LpxA-like RGE_RS01800 6bf4962df48982c5b5f11c8cc79f0284 228 Gene3D G3DSA:2.160.10.10 136 222 8.4E-25 T 26-04-2016 RGE_RS01800 6bf4962df48982c5b5f11c8cc79f0284 228 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 165 199 8.2E-8 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS14450 aaf6263854142e91d3e05615cc1e684f 522 Pfam PF00999 Sodium/hydrogen exchanger family 7 402 7.7E-50 T 26-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RGE_RS14450 aaf6263854142e91d3e05615cc1e684f 522 PANTHER PTHR10110:SF86 7 428 5.4E-68 T 26-04-2016 RGE_RS14450 aaf6263854142e91d3e05615cc1e684f 522 PANTHER PTHR10110 7 428 5.4E-68 T 26-04-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 RGE_RS03270 9985b4e95e056860fa4af6147a69c644 329 PANTHER PTHR30154:SF21 2 158 3.7E-37 T 26-04-2016 RGE_RS03270 9985b4e95e056860fa4af6147a69c644 329 PANTHER PTHR30154 2 158 3.7E-37 T 26-04-2016 RGE_RS02995 f53624d508a1fab0fb89f200ad88832e 1334 PANTHER PTHR23304:SF113 177 1234 2.3E-226 T 26-04-2016 RGE_RS02995 f53624d508a1fab0fb89f200ad88832e 1334 Pfam PF02514 CobN/Magnesium Chelatase 146 1224 2.9E-280 T 26-04-2016 IPR003672 CobN/magnesium chelatase GO:0009058 RGE_RS02995 f53624d508a1fab0fb89f200ad88832e 1334 PANTHER PTHR23304 177 1234 2.3E-226 T 26-04-2016 RGE_RS07140 202cabe0ba0b0daa4313dea70cd74d5d 354 Pfam PF07143 CrtC N-terminal lipocalin domain 40 213 1.0E-47 T 26-04-2016 IPR010791 AttH domain RGE_RS07140 202cabe0ba0b0daa4313dea70cd74d5d 354 Gene3D G3DSA:2.40.370.10 220 352 5.8E-45 T 26-04-2016 IPR023374 AttH-like domain RGE_RS07140 202cabe0ba0b0daa4313dea70cd74d5d 354 SUPERFAMILY SSF159245 22 347 1.19E-96 T 26-04-2016 RGE_RS07140 202cabe0ba0b0daa4313dea70cd74d5d 354 Gene3D G3DSA:2.40.370.10 28 216 4.4E-60 T 26-04-2016 IPR023374 AttH-like domain RGE_RS07140 202cabe0ba0b0daa4313dea70cd74d5d 354 PANTHER PTHR38591 1 352 1.1E-72 T 26-04-2016 RGE_RS07140 202cabe0ba0b0daa4313dea70cd74d5d 354 Pfam PF17186 Lipocalin-like domain 217 347 1.1E-39 T 26-04-2016 IPR033451 AttH, lipocalin-like domain RGE_RS02320 2c94576854ec5317bff768d5a28f69da 324 PANTHER PTHR17490 9 239 2.4E-76 T 26-04-2016 RGE_RS02320 2c94576854ec5317bff768d5a28f69da 324 PIRSF PIRSF004930 5 324 2.0E-92 T 26-04-2016 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 RGE_RS02320 2c94576854ec5317bff768d5a28f69da 324 PANTHER PTHR17490:SF3 9 239 2.4E-76 T 26-04-2016 RGE_RS02320 2c94576854ec5317bff768d5a28f69da 324 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 11 207 2.2E-47 T 26-04-2016 IPR006070 YrdC-like domain GO:0003725 RGE_RS02320 2c94576854ec5317bff768d5a28f69da 324 Pfam PF03481 Putative GTP-binding controlling metal-binding 201 323 1.0E-18 T 26-04-2016 IPR005145 Putative GTP-binding controlling metal-binding domain RGE_RS02320 2c94576854ec5317bff768d5a28f69da 324 SUPERFAMILY SSF55821 10 208 6.71E-56 T 26-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RGE_RS02320 2c94576854ec5317bff768d5a28f69da 324 Gene3D G3DSA:3.90.870.10 9 204 1.2E-68 T 26-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RGE_RS02320 2c94576854ec5317bff768d5a28f69da 324 Pfam PF01300 Telomere recombination 18 196 2.6E-48 T 26-04-2016 IPR006070 YrdC-like domain GO:0003725 RGE_RS02355 d5e950c45f7866e90f0b3c123e4d1a07 148 PANTHER PTHR23091 1 139 3.3E-25 T 26-04-2016 RGE_RS02355 d5e950c45f7866e90f0b3c123e4d1a07 148 Gene3D G3DSA:3.40.630.30 1 139 5.7E-30 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS02355 d5e950c45f7866e90f0b3c123e4d1a07 148 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 5 136 3.4E-35 T 26-04-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 RGE_RS02355 d5e950c45f7866e90f0b3c123e4d1a07 148 PANTHER PTHR23091:SF247 1 139 3.3E-25 T 26-04-2016 RGE_RS02355 d5e950c45f7866e90f0b3c123e4d1a07 148 SUPERFAMILY SSF55729 1 139 3.43E-31 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS02355 d5e950c45f7866e90f0b3c123e4d1a07 148 Pfam PF13673 Acetyltransferase (GNAT) domain 31 120 1.6E-13 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS05745 ffa935cb9a6775deefaeb6c7162cf070 253 Pfam PF07589 PEP-CTERM motif 227 250 1.2E-6 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS05745 ffa935cb9a6775deefaeb6c7162cf070 253 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 228 252 3.1E-4 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS01265 bddad36becb31ec0ed52754183f5c2b8 562 PANTHER PTHR10357:SF11 274 507 3.7E-76 T 26-04-2016 RGE_RS01265 bddad36becb31ec0ed52754183f5c2b8 562 PANTHER PTHR10357:SF11 72 250 3.7E-76 T 26-04-2016 RGE_RS01265 bddad36becb31ec0ed52754183f5c2b8 562 PANTHER PTHR10357:SF11 34 54 3.7E-76 T 26-04-2016 RGE_RS01265 bddad36becb31ec0ed52754183f5c2b8 562 SUPERFAMILY SSF51445 30 485 7.41E-70 T 26-04-2016 IPR017853 Glycoside hydrolase superfamily RGE_RS01265 bddad36becb31ec0ed52754183f5c2b8 562 Pfam PF00128 Alpha amylase, catalytic domain 75 436 9.6E-36 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS01265 bddad36becb31ec0ed52754183f5c2b8 562 PANTHER PTHR10357 274 507 3.7E-76 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS01265 bddad36becb31ec0ed52754183f5c2b8 562 PANTHER PTHR10357 72 250 3.7E-76 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS01265 bddad36becb31ec0ed52754183f5c2b8 562 PANTHER PTHR10357 34 54 3.7E-76 T 26-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RGE_RS01265 bddad36becb31ec0ed52754183f5c2b8 562 Gene3D G3DSA:2.60.40.1180 492 558 2.9E-5 T 26-04-2016 IPR013780 Glycosyl hydrolase, all-beta RGE_RS01265 bddad36becb31ec0ed52754183f5c2b8 562 SMART SM00642 40 476 1.7E-67 T 26-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RGE_RS01265 bddad36becb31ec0ed52754183f5c2b8 562 Gene3D G3DSA:3.20.20.80 34 483 2.6E-76 T 26-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RGE_RS10740 f87a2b4b4668829d2c8f8b3a534f8d34 229 SMART SM00382 38 226 1.3E-8 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS10740 f87a2b4b4668829d2c8f8b3a534f8d34 229 PANTHER PTHR24220 15 229 3.4E-59 T 26-04-2016 RGE_RS10740 f87a2b4b4668829d2c8f8b3a534f8d34 229 SUPERFAMILY SSF52540 15 207 1.39E-36 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10740 f87a2b4b4668829d2c8f8b3a534f8d34 229 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 14 207 9.1E-58 T 26-04-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 RGE_RS10740 f87a2b4b4668829d2c8f8b3a534f8d34 229 PANTHER PTHR24220:SF508 15 229 3.4E-59 T 26-04-2016 RGE_RS10740 f87a2b4b4668829d2c8f8b3a534f8d34 229 Gene3D G3DSA:3.40.50.300 13 207 1.4E-39 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS10740 f87a2b4b4668829d2c8f8b3a534f8d34 229 Pfam PF00005 ABC transporter 30 170 1.1E-23 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS18260 2d45265eae494fff34ff7b5c7a255f13 226 PANTHER PTHR30055 7 211 4.0E-19 T 26-04-2016 RGE_RS18260 2d45265eae494fff34ff7b5c7a255f13 226 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 71 2.5E-8 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS18260 2d45265eae494fff34ff7b5c7a255f13 226 Gene3D G3DSA:1.10.357.10 18 207 1.6E-28 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS18260 2d45265eae494fff34ff7b5c7a255f13 226 SUPERFAMILY SSF46689 11 97 7.28E-14 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS23020 936bced9c57e54eafee2f3a31f083ebc 241 Pfam PF13471 Transglutaminase-like superfamily 129 239 4.6E-19 T 26-04-2016 IPR032708 Microcin J25-processing protein McjB, C-terminal RGE_RS18280 44ba7bfba2213f9b85dc6ca1d51403c1 176 SUPERFAMILY SSF50341 27 164 1.57E-36 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS18280 44ba7bfba2213f9b85dc6ca1d51403c1 176 PANTHER PTHR22617 27 163 3.6E-41 T 26-04-2016 RGE_RS18280 44ba7bfba2213f9b85dc6ca1d51403c1 176 SMART SM00260 22 163 3.2E-33 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS18280 44ba7bfba2213f9b85dc6ca1d51403c1 176 Pfam PF01584 CheW-like domain 27 163 1.9E-35 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS18280 44ba7bfba2213f9b85dc6ca1d51403c1 176 Gene3D G3DSA:2.30.30.40 101 157 2.7E-7 T 26-04-2016 RGE_RS18280 44ba7bfba2213f9b85dc6ca1d51403c1 176 Gene3D G3DSA:2.40.50.180 65 100 6.4E-8 T 26-04-2016 RGE_RS05475 c0eb70c06a96274cde08387287bcb472 101 Gene3D G3DSA:3.40.50.1820 49 86 1.2E-4 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS10595 9e54077edd40e783427db1e5113d8571 504 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 441 3.5E-143 T 26-04-2016 IPR002823 Protein of unknown function DUF112, transmembrane RGE_RS10595 9e54077edd40e783427db1e5113d8571 504 PANTHER PTHR35342:SF2 2 504 3.8E-274 T 26-04-2016 RGE_RS10595 9e54077edd40e783427db1e5113d8571 504 PANTHER PTHR35342 2 504 3.8E-274 T 26-04-2016 RGE_RS02105 496d4aab4cc40f02c72b174c486324b7 373 Gene3D G3DSA:3.40.50.2000 160 340 2.0E-30 T 26-04-2016 RGE_RS02105 496d4aab4cc40f02c72b174c486324b7 373 Gene3D G3DSA:3.40.50.2000 7 134 3.8E-5 T 26-04-2016 RGE_RS02105 496d4aab4cc40f02c72b174c486324b7 373 PANTHER PTHR12526 1 371 2.1E-56 T 26-04-2016 RGE_RS02105 496d4aab4cc40f02c72b174c486324b7 373 Pfam PF13692 Glycosyl transferases group 1 197 339 4.0E-21 T 26-04-2016 RGE_RS02105 496d4aab4cc40f02c72b174c486324b7 373 SUPERFAMILY SSF53756 2 371 6.28E-71 T 26-04-2016 RGE_RS02105 496d4aab4cc40f02c72b174c486324b7 373 Pfam PF13579 Glycosyl transferase 4-like domain 11 169 1.3E-19 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS22230 3d5c82ad2c2ba65037e4f0803f5fc3f8 320 Gene3D G3DSA:3.40.50.2300 123 279 3.1E-57 T 26-04-2016 RGE_RS22230 3d5c82ad2c2ba65037e4f0803f5fc3f8 320 Pfam PF02608 Basic membrane protein 28 277 1.6E-57 T 26-04-2016 IPR003760 Basic membrane lipoprotein GO:0005886 RGE_RS22230 3d5c82ad2c2ba65037e4f0803f5fc3f8 320 PANTHER PTHR34296:SF2 22 310 1.4E-100 T 26-04-2016 RGE_RS22230 3d5c82ad2c2ba65037e4f0803f5fc3f8 320 SUPERFAMILY SSF53822 33 260 1.01E-15 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS22230 3d5c82ad2c2ba65037e4f0803f5fc3f8 320 PANTHER PTHR34296 22 310 1.4E-100 T 26-04-2016 RGE_RS11070 93651fa7c8e7fb1889dbb41faf0cc0de 179 SMART SM00530 2 56 4.8E-13 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS11070 93651fa7c8e7fb1889dbb41faf0cc0de 179 Gene3D G3DSA:1.10.260.40 4 65 7.2E-17 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS11070 93651fa7c8e7fb1889dbb41faf0cc0de 179 Pfam PF13239 2TM domain 98 175 1.4E-24 T 26-04-2016 IPR025698 2TM domain RGE_RS11070 93651fa7c8e7fb1889dbb41faf0cc0de 179 SUPERFAMILY SSF47413 3 60 2.67E-14 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS11070 93651fa7c8e7fb1889dbb41faf0cc0de 179 Pfam PF01381 Helix-turn-helix 4 55 5.8E-15 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS04680 7bfa26d1f10266a8860e087791fedc0c 412 Hamap MF_00913 Putative lipid II flippase FtsW [ftsW]. 38 411 37.554 T 26-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 RGE_RS04680 7bfa26d1f10266a8860e087791fedc0c 412 PANTHER PTHR30474:SF2 20 404 4.8E-139 T 26-04-2016 RGE_RS04680 7bfa26d1f10266a8860e087791fedc0c 412 PANTHER PTHR30474 20 404 4.8E-139 T 26-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RGE_RS04680 7bfa26d1f10266a8860e087791fedc0c 412 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 361 385 - T 26-04-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 RGE_RS04680 7bfa26d1f10266a8860e087791fedc0c 412 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 40 402 2.4E-117 T 26-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 RGE_RS04680 7bfa26d1f10266a8860e087791fedc0c 412 Pfam PF01098 Cell cycle protein 43 404 2.2E-102 T 26-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RGE_RS20955 be5a460f1ed012e81ef9aa981dfa1f35 66 Pfam PF05082 Rop-like 3 64 1.7E-28 T 26-04-2016 IPR007774 Putative nitrogen fixation protein RGE_RS20955 be5a460f1ed012e81ef9aa981dfa1f35 66 PIRSF PIRSF037676 1 66 3.7E-25 T 26-04-2016 IPR007774 Putative nitrogen fixation protein RGE_RS20955 be5a460f1ed012e81ef9aa981dfa1f35 66 Gene3D G3DSA:1.10.287.660 1 64 6.8E-29 T 26-04-2016 IPR029012 Helix hairpin bin domain RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 ProSitePatterns PS00785 5'-nucleotidase signature 1. 38 50 - T 26-04-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 SUPERFAMILY SSF56300 32 358 2.97E-65 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 SUPERFAMILY SSF55816 362 555 6.67E-42 T 26-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 Gene3D G3DSA:3.90.780.10 363 553 1.5E-40 T 26-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 Pfam PF02872 5'-nucleotidase, C-terminal domain 363 520 6.6E-35 T 26-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 PRINTS PR01607 Apyrase family signature 494 513 2.4E-18 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 PRINTS PR01607 Apyrase family signature 36 54 2.4E-18 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 PRINTS PR01607 Apyrase family signature 239 256 2.4E-18 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 PRINTS PR01607 Apyrase family signature 272 295 2.4E-18 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 PRINTS PR01607 Apyrase family signature 421 444 2.4E-18 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 Gene3D G3DSA:3.60.21.10 32 357 3.8E-68 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 Pfam PF00149 Calcineurin-like phosphoesterase 38 289 1.0E-9 T 26-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 PANTHER PTHR11575 20 554 1.6E-132 T 26-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RGE_RS22320 18f4fa621e4a788b888ce86bddbd9080 557 PANTHER PTHR11575:SF7 20 554 1.6E-132 T 26-04-2016 RGE_RS00310 39ab7da7f8ae88332a0690e2974bd746 428 PANTHER PTHR30510 1 428 8.5E-151 T 26-04-2016 RGE_RS00310 39ab7da7f8ae88332a0690e2974bd746 428 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 425 37.364 T 26-04-2016 IPR006698 Uncharacterised protein family UPF0229 RGE_RS00310 39ab7da7f8ae88332a0690e2974bd746 428 Pfam PF04285 Protein of unknown function (DUF444) 3 423 4.3E-180 T 26-04-2016 IPR006698 Uncharacterised protein family UPF0229 RGE_RS18030 15a5760b1cc5b768df5786150fb2d4d4 284 PANTHER PTHR22908 1 239 2.4E-71 T 26-04-2016 RGE_RS18030 15a5760b1cc5b768df5786150fb2d4d4 284 Gene3D G3DSA:3.40.50.300 8 204 6.2E-30 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18030 15a5760b1cc5b768df5786150fb2d4d4 284 SUPERFAMILY SSF52540 7 239 1.63E-34 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18030 15a5760b1cc5b768df5786150fb2d4d4 284 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 29 180 1.4E-12 T 26-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RGE_RS18030 15a5760b1cc5b768df5786150fb2d4d4 284 SMART SM00382 25 187 6.0E-6 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS16915 8591b774c6e16526b5a43e9eee7568a3 152 SUPERFAMILY SSF55298 1 151 1.73E-46 T 26-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RGE_RS16915 8591b774c6e16526b5a43e9eee7568a3 152 PANTHER PTHR11803 1 152 1.9E-37 T 26-04-2016 IPR006175 YjgF/YER057c/UK114 family RGE_RS16915 8591b774c6e16526b5a43e9eee7568a3 152 PANTHER PTHR11803:SF2 1 152 1.9E-37 T 26-04-2016 RGE_RS16915 8591b774c6e16526b5a43e9eee7568a3 152 Gene3D G3DSA:3.30.1330.40 1 151 3.3E-56 T 26-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RGE_RS16915 8591b774c6e16526b5a43e9eee7568a3 152 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 6 151 1.9E-24 T 26-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RGE_RS11110 05de65bee2c09c677e232bd09b5531e0 417 PANTHER PTHR15108 9 415 1.6E-62 T 26-04-2016 RGE_RS11110 05de65bee2c09c677e232bd09b5531e0 417 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 44 404 3.0E-96 T 26-04-2016 RGE_RS11110 05de65bee2c09c677e232bd09b5531e0 417 Gene3D G3DSA:1.50.10.10 15 414 4.5E-115 T 26-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 RGE_RS11110 05de65bee2c09c677e232bd09b5531e0 417 SUPERFAMILY SSF48208 16 415 5.33E-106 T 26-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 RGE_RS16795 1777aba5f8b7ea13ccd4c7a148071376 138 SUPERFAMILY SSF54593 1 128 6.04E-35 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS16795 1777aba5f8b7ea13ccd4c7a148071376 138 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 5.0E-23 T 26-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RGE_RS16795 1777aba5f8b7ea13ccd4c7a148071376 138 PANTHER PTHR10374 1 138 3.7E-57 T 26-04-2016 RGE_RS16795 1777aba5f8b7ea13ccd4c7a148071376 138 ProSitePatterns PS00935 Glyoxalase I signature 2. 69 81 - T 26-04-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 RGE_RS16795 1777aba5f8b7ea13ccd4c7a148071376 138 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 26-04-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 RGE_RS16795 1777aba5f8b7ea13ccd4c7a148071376 138 Gene3D G3DSA:3.10.180.10 1 131 7.2E-47 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS16795 1777aba5f8b7ea13ccd4c7a148071376 138 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 130 6.0E-62 T 26-04-2016 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 RGE_RS18640 73678f46a703a3bb143d439038276cd0 295 Pfam PF13469 Sulfotransferase family 10 209 2.1E-18 T 26-04-2016 RGE_RS18640 73678f46a703a3bb143d439038276cd0 295 Gene3D G3DSA:3.40.50.300 9 216 2.6E-13 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18640 73678f46a703a3bb143d439038276cd0 295 SUPERFAMILY SSF52540 7 219 3.9E-27 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06270 3ce541a368c48c31c9e348ec122ba0b7 263 SUPERFAMILY SSF54909 137 244 7.78E-5 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS06270 3ce541a368c48c31c9e348ec122ba0b7 263 Pfam PF07110 EthD domain 12 100 2.7E-9 T 26-04-2016 IPR009799 EthD domain RGE_RS06270 3ce541a368c48c31c9e348ec122ba0b7 263 Pfam PF07110 EthD domain 148 237 2.0E-4 T 26-04-2016 IPR009799 EthD domain RGE_RS06270 3ce541a368c48c31c9e348ec122ba0b7 263 SUPERFAMILY SSF54909 1 113 8.04E-14 T 26-04-2016 IPR011008 Dimeric alpha-beta barrel RGE_RS06270 3ce541a368c48c31c9e348ec122ba0b7 263 Gene3D G3DSA:3.30.70.900 1 111 2.7E-6 T 26-04-2016 RGE_RS06270 3ce541a368c48c31c9e348ec122ba0b7 263 Gene3D G3DSA:3.30.70.900 134 219 9.2E-4 T 26-04-2016 RGE_RS18790 fba18f9d12ffa94ae9d84e1128b61bac 201 Gene3D G3DSA:1.10.10.10 4 89 3.4E-7 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18790 fba18f9d12ffa94ae9d84e1128b61bac 201 Pfam PF01909 Nucleotidyltransferase domain 94 134 4.4E-5 T 26-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RGE_RS18790 fba18f9d12ffa94ae9d84e1128b61bac 201 SUPERFAMILY SSF46785 3 97 6.06E-7 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS18790 fba18f9d12ffa94ae9d84e1128b61bac 201 SUPERFAMILY SSF81301 84 186 1.38E-14 T 26-04-2016 RGE_RS18790 fba18f9d12ffa94ae9d84e1128b61bac 201 Gene3D G3DSA:3.30.460.10 90 187 6.6E-16 T 26-04-2016 RGE_RS13940 1718def6de12fd9609adca1e6232d06b 147 Pfam PF04972 BON domain 78 145 1.8E-20 T 26-04-2016 IPR007055 BON domain RGE_RS13940 1718def6de12fd9609adca1e6232d06b 147 SMART SM00749 83 146 6.5E-9 T 26-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria RGE_RS00225 c358381e9a592baf2afe0074c8de9d2b 517 PANTHER PTHR32234 25 148 5.0E-12 T 26-04-2016 RGE_RS00225 c358381e9a592baf2afe0074c8de9d2b 517 SUPERFAMILY SSF52833 40 146 4.72E-23 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS00225 c358381e9a592baf2afe0074c8de9d2b 517 Pfam PF13098 Thioredoxin-like domain 48 140 1.4E-13 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS00225 c358381e9a592baf2afe0074c8de9d2b 517 Gene3D G3DSA:3.40.30.10 39 144 4.3E-25 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS16275 95dad21b9216d829378075a07b5efee0 273 TIGRFAM TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase 1 267 2.2E-95 T 26-04-2016 IPR006372 Bacteriochlorophyll/chlorophyll synthetase RGE_RS16275 95dad21b9216d829378075a07b5efee0 273 Pfam PF01040 UbiA prenyltransferase family 7 242 4.7E-36 T 26-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RGE_RS16275 95dad21b9216d829378075a07b5efee0 273 PANTHER PTHR11048 1 266 5.3E-64 T 26-04-2016 RGE_RS16275 95dad21b9216d829378075a07b5efee0 273 PANTHER PTHR11048:SF32 1 266 5.3E-64 T 26-04-2016 RGE_RS20375 5fdcb4f31b43b66b84c526adc650e17e 232 Pfam PF02104 SURF1 family 8 214 3.3E-29 T 26-04-2016 IPR002994 Surfeit locus 1/Shy1 GO:0016020 RGE_RS07945 1d76880daf415778425071ee81e23c39 220 SUPERFAMILY SSF75445 127 199 4.71E-20 T 26-04-2016 RGE_RS07945 1d76880daf415778425071ee81e23c39 220 Gene3D G3DSA:3.40.50.1360 1 136 8.6E-54 T 26-04-2016 RGE_RS07945 1d76880daf415778425071ee81e23c39 220 SUPERFAMILY SSF100950 1 148 2.88E-42 T 26-04-2016 RGE_RS07945 1d76880daf415778425071ee81e23c39 220 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 218 31.28 T 26-04-2016 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RGE_RS07945 1d76880daf415778425071ee81e23c39 220 PANTHER PTHR11934 1 219 6.0E-103 T 26-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RGE_RS07945 1d76880daf415778425071ee81e23c39 220 PANTHER PTHR11934:SF11 1 219 6.0E-103 T 26-04-2016 RGE_RS07945 1d76880daf415778425071ee81e23c39 220 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 7 214 2.0E-61 T 26-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RGE_RS07945 1d76880daf415778425071ee81e23c39 220 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 212 4.1E-53 T 26-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RGE_RS07945 1d76880daf415778425071ee81e23c39 220 Gene3D G3DSA:3.30.70.260 137 197 9.4E-25 T 26-04-2016 RGE_RS07395 b0635a1897307f7e1aa25b9999417329 290 Gene3D G3DSA:3.40.50.1980 39 155 3.0E-31 T 26-04-2016 RGE_RS07395 b0635a1897307f7e1aa25b9999417329 290 Gene3D G3DSA:3.40.50.1980 163 284 2.1E-20 T 26-04-2016 RGE_RS07395 b0635a1897307f7e1aa25b9999417329 290 PANTHER PTHR30535 1 284 1.2E-43 T 26-04-2016 RGE_RS07395 b0635a1897307f7e1aa25b9999417329 290 Pfam PF01497 Periplasmic binding protein 43 254 2.1E-28 T 26-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 RGE_RS07395 b0635a1897307f7e1aa25b9999417329 290 SUPERFAMILY SSF53807 39 284 1.57E-51 T 26-04-2016 RGE_RS07970 99311aa23a3ca3277408159ee0e06059 339 Pfam PF10093 Uncharacterized protein conserved in bacteria (DUF2331) 6 331 4.1E-112 T 26-04-2016 IPR016633 Uncharacterised conserved protein UCP015557 RGE_RS07970 99311aa23a3ca3277408159ee0e06059 339 TIGRFAM TIGR03837 efp_adjacent_2: conserved hypothetical protein, PP_1857 family 6 331 3.3E-113 T 26-04-2016 IPR016633 Uncharacterised conserved protein UCP015557 RGE_RS13355 85c8c13d5db53fc5e7217a3e096812d7 386 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 16 368 32.347 T 26-04-2016 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 UniPathway: UPA00031 RGE_RS13355 85c8c13d5db53fc5e7217a3e096812d7 386 PANTHER PTHR11476:SF5 12 320 3.8E-52 T 26-04-2016 RGE_RS13355 85c8c13d5db53fc5e7217a3e096812d7 386 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 12 321 1.5E-82 T 26-04-2016 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 UniPathway: UPA00031 RGE_RS13355 85c8c13d5db53fc5e7217a3e096812d7 386 PIRSF PIRSF001549 6 333 1.8E-42 T 26-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RGE_RS13355 85c8c13d5db53fc5e7217a3e096812d7 386 Gene3D G3DSA:3.30.930.10 18 317 4.4E-63 T 26-04-2016 RGE_RS13355 85c8c13d5db53fc5e7217a3e096812d7 386 SUPERFAMILY SSF55681 4 321 1.61E-58 T 26-04-2016 RGE_RS13355 85c8c13d5db53fc5e7217a3e096812d7 386 Pfam PF13393 Histidyl-tRNA synthetase 9 317 2.2E-111 T 26-04-2016 RGE_RS13355 85c8c13d5db53fc5e7217a3e096812d7 386 PANTHER PTHR11476 12 320 3.8E-52 T 26-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RGE_RS10825 58e9e0d7f2d878f5457f07c6834dbb9c 228 Pfam PF06904 Extensin-like protein C-terminus 57 228 3.1E-56 T 26-04-2016 IPR009683 Extensin-like, C-terminal RGE_RS04070 55fd966b47ace488cc14278e1614afd1 260 PANTHER PTHR30188 1 257 1.0E-93 T 26-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RGE_RS04070 55fd966b47ace488cc14278e1614afd1 260 PANTHER PTHR30188:SF4 1 257 1.0E-93 T 26-04-2016 RGE_RS04070 55fd966b47ace488cc14278e1614afd1 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 9 257 4.4E-76 T 26-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria RGE_RS04070 55fd966b47ace488cc14278e1614afd1 260 Pfam PF02405 Permease MlaE 44 255 5.5E-68 T 26-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RGE_RS22060 8d493fefc9af97e0079094756967f24c 217 PANTHER PTHR30625:SF3 16 211 5.2E-28 T 26-04-2016 RGE_RS22060 8d493fefc9af97e0079094756967f24c 217 PANTHER PTHR30625 16 211 5.2E-28 T 26-04-2016 RGE_RS22060 8d493fefc9af97e0079094756967f24c 217 Pfam PF01618 MotA/TolQ/ExbB proton channel family 97 201 1.1E-28 T 26-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RGE_RS08720 d3ce027dc46d55c60187d70528f2a289 318 PANTHER PTHR32196:SF9 26 307 4.0E-77 T 26-04-2016 RGE_RS08720 d3ce027dc46d55c60187d70528f2a289 318 Pfam PF13407 Periplasmic binding protein domain 34 296 1.1E-53 T 26-04-2016 IPR025997 Periplasmic binding protein RGE_RS08720 d3ce027dc46d55c60187d70528f2a289 318 Gene3D G3DSA:3.40.50.2300 33 159 4.3E-38 T 26-04-2016 RGE_RS08720 d3ce027dc46d55c60187d70528f2a289 318 Gene3D G3DSA:3.40.50.2300 160 317 1.1E-43 T 26-04-2016 RGE_RS08720 d3ce027dc46d55c60187d70528f2a289 318 PANTHER PTHR32196 26 307 4.0E-77 T 26-04-2016 RGE_RS08720 d3ce027dc46d55c60187d70528f2a289 318 SUPERFAMILY SSF53822 8 317 8.64E-70 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS10245 1c5f8cb27f3d96065f4ac3022a5b7d44 214 PANTHER PTHR30586:SF0 1 207 1.8E-80 T 26-04-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 RGE_RS10245 1c5f8cb27f3d96065f4ac3022a5b7d44 214 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 184 2.5E-59 T 26-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 RGE_RS10245 1c5f8cb27f3d96065f4ac3022a5b7d44 214 Hamap MF_00478 Electron transport complex subunit RsxE [rsxE]. 1 197 24.47 T 26-04-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 RGE_RS10245 1c5f8cb27f3d96065f4ac3022a5b7d44 214 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 6 194 6.4E-68 T 26-04-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 RGE_RS10245 1c5f8cb27f3d96065f4ac3022a5b7d44 214 PIRSF PIRSF006102 2 205 3.2E-64 T 26-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 RGE_RS10245 1c5f8cb27f3d96065f4ac3022a5b7d44 214 PANTHER PTHR30586 1 207 1.8E-80 T 26-04-2016 RGE_RS09905 085d2baf8beab4c0d850159f255a4e9a 282 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 2 275 6.8E-50 T 26-04-2016 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 RGE_RS09905 085d2baf8beab4c0d850159f255a4e9a 282 PANTHER PTHR38095:SF2 1 281 4.3E-55 T 26-04-2016 RGE_RS09905 085d2baf8beab4c0d850159f255a4e9a 282 PANTHER PTHR38095 1 281 4.3E-55 T 26-04-2016 RGE_RS23250 afbdf0e00f79085f00714bcd1527cb7d 143 SMART SM00749 74 137 0.0034 T 26-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria RGE_RS23250 afbdf0e00f79085f00714bcd1527cb7d 143 Pfam PF04972 BON domain 69 136 3.1E-15 T 26-04-2016 IPR007055 BON domain RGE_RS23150 6c166d4e728a1d77747ba8bf3dc9cb94 367 Pfam PF02120 Flagellar hook-length control protein FliK 249 324 2.5E-14 T 26-04-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal RGE_RS16120 0d40f81d288c5451c4bf6ec1814f3ba6 86 SUPERFAMILY SSF143800 1 82 4.32E-19 T 26-04-2016 RGE_RS16120 0d40f81d288c5451c4bf6ec1814f3ba6 86 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 71 - T 26-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS16120 0d40f81d288c5451c4bf6ec1814f3ba6 86 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 80 1.0E-18 T 26-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS16120 0d40f81d288c5451c4bf6ec1814f3ba6 86 PRINTS PR01249 Ribosomal protein L31 signature 2 19 5.6E-7 T 26-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS16120 0d40f81d288c5451c4bf6ec1814f3ba6 86 PRINTS PR01249 Ribosomal protein L31 signature 45 60 5.6E-7 T 26-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS16120 0d40f81d288c5451c4bf6ec1814f3ba6 86 PANTHER PTHR33280:SF2 1 80 3.6E-22 T 26-04-2016 RGE_RS16120 0d40f81d288c5451c4bf6ec1814f3ba6 86 PANTHER PTHR33280 1 80 3.6E-22 T 26-04-2016 RGE_RS16120 0d40f81d288c5451c4bf6ec1814f3ba6 86 Pfam PF01197 Ribosomal protein L31 1 80 6.0E-26 T 26-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS07390 724d127080f242eefda3d965b536ad3f 182 PANTHER PTHR34848 4 181 2.1E-53 T 26-04-2016 RGE_RS07390 724d127080f242eefda3d965b536ad3f 182 SUPERFAMILY SSF52540 4 179 2.46E-41 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07390 724d127080f242eefda3d965b536ad3f 182 PIRSF PIRSF006135 1 181 2.3E-41 T 26-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 RGE_RS07390 724d127080f242eefda3d965b536ad3f 182 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 4 177 3.9E-47 T 26-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 RGE_RS07390 724d127080f242eefda3d965b536ad3f 182 Gene3D G3DSA:3.40.50.300 4 179 6.1E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08875 678a9823b215cf267c265ebbbbcf6e7d 605 PANTHER PTHR32182 2 142 3.0E-13 T 26-04-2016 RGE_RS08875 678a9823b215cf267c265ebbbbcf6e7d 605 Pfam PF13175 AAA ATPase domain 279 350 4.3E-9 T 26-04-2016 RGE_RS08875 678a9823b215cf267c265ebbbbcf6e7d 605 Pfam PF13175 AAA ATPase domain 2 49 6.3E-11 T 26-04-2016 RGE_RS08875 678a9823b215cf267c265ebbbbcf6e7d 605 Gene3D G3DSA:3.40.50.300 2 101 3.0E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08875 678a9823b215cf267c265ebbbbcf6e7d 605 Gene3D G3DSA:3.40.50.300 155 365 3.0E-26 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08875 678a9823b215cf267c265ebbbbcf6e7d 605 SUPERFAMILY SSF52540 2 96 1.16E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08875 678a9823b215cf267c265ebbbbcf6e7d 605 SUPERFAMILY SSF52540 273 363 1.16E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08875 678a9823b215cf267c265ebbbbcf6e7d 605 SUPERFAMILY SSF52540 185 214 1.16E-19 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11485 32dd6769062cb2b9cbd515590907740b 749 SUPERFAMILY SSF53756 261 725 3.68E-132 T 26-04-2016 RGE_RS11485 32dd6769062cb2b9cbd515590907740b 749 PANTHER PTHR10788 217 727 4.6E-157 T 26-04-2016 RGE_RS11485 32dd6769062cb2b9cbd515590907740b 749 Pfam PF00982 Glycosyltransferase family 20 261 726 3.3E-126 T 26-04-2016 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 RGE_RS11485 32dd6769062cb2b9cbd515590907740b 749 Gene3D G3DSA:3.40.50.2000 261 514 1.2E-68 T 26-04-2016 RGE_RS11485 32dd6769062cb2b9cbd515590907740b 749 PANTHER PTHR10788:SF6 217 727 4.6E-157 T 26-04-2016 RGE_RS11485 32dd6769062cb2b9cbd515590907740b 749 Gene3D G3DSA:3.40.50.2000 515 712 4.5E-69 T 26-04-2016 RGE_RS20695 eee51d3cfc4e3ea741d2b1a0cbee4a6d 269 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 176 182 - T 26-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RGE_RS20695 eee51d3cfc4e3ea741d2b1a0cbee4a6d 269 PANTHER PTHR18895 1 269 1.1E-89 T 26-04-2016 RGE_RS20695 eee51d3cfc4e3ea741d2b1a0cbee4a6d 269 PANTHER PTHR18895:SF64 1 269 1.1E-89 T 26-04-2016 RGE_RS20695 eee51d3cfc4e3ea741d2b1a0cbee4a6d 269 Gene3D G3DSA:3.40.50.150 82 268 3.7E-64 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS20695 eee51d3cfc4e3ea741d2b1a0cbee4a6d 269 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 19 265 6.3E-84 T 26-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RGE_RS20695 eee51d3cfc4e3ea741d2b1a0cbee4a6d 269 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 16 265 5.1E-64 T 26-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RGE_RS20695 eee51d3cfc4e3ea741d2b1a0cbee4a6d 269 Pfam PF05175 Methyltransferase small domain 100 193 2.8E-17 T 26-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RGE_RS20695 eee51d3cfc4e3ea741d2b1a0cbee4a6d 269 Gene3D G3DSA:1.10.8.10 6 80 4.9E-20 T 26-04-2016 RGE_RS20695 eee51d3cfc4e3ea741d2b1a0cbee4a6d 269 SUPERFAMILY SSF53335 7 267 8.89E-55 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS20695 eee51d3cfc4e3ea741d2b1a0cbee4a6d 269 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 1 269 42.085 T 26-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RGE_RS07490 59e539a67600b4b18cb2e52fc3a2405a 197 PANTHER PTHR35011:SF4 4 166 5.0E-43 T 26-04-2016 RGE_RS07490 59e539a67600b4b18cb2e52fc3a2405a 197 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 29 161 3.4E-22 T 26-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RGE_RS07490 59e539a67600b4b18cb2e52fc3a2405a 197 PANTHER PTHR35011 4 166 5.0E-43 T 26-04-2016 RGE_RS20295 5e0bb0af96e03f7eda136fe3ff874c3f 144 PANTHER PTHR15887 7 134 6.6E-15 T 26-04-2016 RGE_RS20295 5e0bb0af96e03f7eda136fe3ff874c3f 144 Pfam PF11911 Protein of unknown function (DUF3429) 7 139 7.6E-32 T 26-04-2016 IPR021836 Protein of unknown function DUF3429 RGE_RS15030 fe98d77476d9b9e5d5f48ca9c8e0ee80 320 SUPERFAMILY SSF53335 70 225 4.18E-8 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS15030 fe98d77476d9b9e5d5f48ca9c8e0ee80 320 Gene3D G3DSA:3.40.50.150 71 226 3.8E-9 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS20185 81caddf4266792d2ba7b62809d3a1082 299 PANTHER PTHR10491:SF4 1 299 1.2E-95 T 26-04-2016 RGE_RS20185 81caddf4266792d2ba7b62809d3a1082 299 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 291 4.7E-100 T 26-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family RGE_RS20185 81caddf4266792d2ba7b62809d3a1082 299 Pfam PF04321 RmlD substrate binding domain 1 292 1.0E-107 T 26-04-2016 IPR029903 RmlD-like substrate binding domain RGE_RS20185 81caddf4266792d2ba7b62809d3a1082 299 Gene3D G3DSA:3.40.50.720 1 187 2.3E-29 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20185 81caddf4266792d2ba7b62809d3a1082 299 PANTHER PTHR10491 1 299 1.2E-95 T 26-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family RGE_RS20185 81caddf4266792d2ba7b62809d3a1082 299 SUPERFAMILY SSF51735 1 293 2.16E-101 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS20185 81caddf4266792d2ba7b62809d3a1082 299 Gene3D G3DSA:3.90.25.10 218 282 6.5E-29 T 26-04-2016 RGE_RS06510 d644466bf6846d6978eb6e629795b39c 286 SUPERFAMILY SSF56529 62 278 7.46E-80 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS06510 d644466bf6846d6978eb6e629795b39c 286 PANTHER PTHR11820:SF71 1 276 7.0E-145 T 26-04-2016 RGE_RS06510 d644466bf6846d6978eb6e629795b39c 286 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 71 276 9.1E-69 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS06510 d644466bf6846d6978eb6e629795b39c 286 Gene3D G3DSA:3.90.850.10 69 277 1.1E-84 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS06510 d644466bf6846d6978eb6e629795b39c 286 PANTHER PTHR11820 1 276 7.0E-145 T 26-04-2016 RGE_RS06455 91fdc00c399e6380f0b183ba856dada3 279 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 172 274 1.2E-17 T 26-04-2016 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 RGE_RS06455 91fdc00c399e6380f0b183ba856dada3 279 PANTHER PTHR10869 92 275 1.8E-77 T 26-04-2016 RGE_RS06455 91fdc00c399e6380f0b183ba856dada3 279 SMART SM00702 92 274 4.6E-51 T 26-04-2016 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 RGE_RS01155 7c76f2a134f3d85d987ebee0e9a689d5 230 SUPERFAMILY SSF81342 9 193 1.73E-33 T 26-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RGE_RS01155 7c76f2a134f3d85d987ebee0e9a689d5 230 Gene3D G3DSA:1.20.950.20 11 190 3.4E-7 T 26-04-2016 RGE_RS01155 7c76f2a134f3d85d987ebee0e9a689d5 230 Pfam PF01292 Prokaryotic cytochrome b561 14 188 1.6E-20 T 26-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RGE_RS05715 6a9565e415a6a7cb0362311784328423 663 Gene3D G3DSA:2.170.130.10 15 148 3.5E-23 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS05715 6a9565e415a6a7cb0362311784328423 663 SUPERFAMILY SSF56935 25 663 4.12E-85 T 26-04-2016 RGE_RS05715 6a9565e415a6a7cb0362311784328423 663 Gene3D G3DSA:2.40.170.20 153 663 4.6E-61 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS05715 6a9565e415a6a7cb0362311784328423 663 PANTHER PTHR30069:SF13 28 451 1.6E-106 T 26-04-2016 RGE_RS05715 6a9565e415a6a7cb0362311784328423 663 Pfam PF07715 TonB-dependent Receptor Plug Domain 38 141 1.9E-15 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS05715 6a9565e415a6a7cb0362311784328423 663 PANTHER PTHR30069 28 451 1.6E-106 T 26-04-2016 RGE_RS05715 6a9565e415a6a7cb0362311784328423 663 Pfam PF00593 TonB dependent receptor 406 661 6.4E-22 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS04795 4f950063d0247b17c44a3125f3aeb9c5 294 Gene3D G3DSA:3.20.20.100 24 284 2.0E-40 T 26-04-2016 IPR023210 NADP-dependent oxidoreductase domain RGE_RS04795 4f950063d0247b17c44a3125f3aeb9c5 294 SUPERFAMILY SSF51430 24 283 6.15E-48 T 26-04-2016 IPR023210 NADP-dependent oxidoreductase domain RGE_RS04795 4f950063d0247b17c44a3125f3aeb9c5 294 PANTHER PTHR11732 21 285 1.0E-37 T 26-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RGE_RS04795 4f950063d0247b17c44a3125f3aeb9c5 294 Pfam PF00248 Aldo/keto reductase family 35 282 1.8E-25 T 26-04-2016 IPR023210 NADP-dependent oxidoreductase domain RGE_RS01450 31654be59aebeecab7e8ae2691e89915 402 SUPERFAMILY SSF53822 31 401 4.71E-89 T 26-04-2016 IPR028082 Periplasmic binding protein-like I RGE_RS01450 31654be59aebeecab7e8ae2691e89915 402 PANTHER PTHR30483 1 402 7.9E-181 T 26-04-2016 RGE_RS01450 31654be59aebeecab7e8ae2691e89915 402 Gene3D G3DSA:3.40.50.2300 157 302 3.0E-18 T 26-04-2016 RGE_RS01450 31654be59aebeecab7e8ae2691e89915 402 PANTHER PTHR30483:SF17 1 402 7.9E-181 T 26-04-2016 RGE_RS01450 31654be59aebeecab7e8ae2691e89915 402 Gene3D G3DSA:3.40.50.2300 27 154 6.4E-30 T 26-04-2016 RGE_RS01450 31654be59aebeecab7e8ae2691e89915 402 Gene3D G3DSA:3.40.50.2300 303 341 6.4E-30 T 26-04-2016 RGE_RS01450 31654be59aebeecab7e8ae2691e89915 402 Pfam PF13458 Periplasmic binding protein 31 366 9.5E-88 T 26-04-2016 IPR028081 Leucine-binding protein domain RGE_RS00625 71797a158a7a25a0207a69b692adfedb 266 SUPERFAMILY SSF102198 193 248 7.72E-52 T 26-04-2016 RGE_RS00625 71797a158a7a25a0207a69b692adfedb 266 SUPERFAMILY SSF102198 6 159 7.72E-52 T 26-04-2016 RGE_RS00625 71797a158a7a25a0207a69b692adfedb 266 PANTHER PTHR31118 6 158 1.9E-46 T 26-04-2016 RGE_RS00625 71797a158a7a25a0207a69b692adfedb 266 PANTHER PTHR31118 192 256 1.9E-46 T 26-04-2016 RGE_RS00625 71797a158a7a25a0207a69b692adfedb 266 Gene3D G3DSA:3.50.30.50 4 159 2.8E-70 T 26-04-2016 RGE_RS00625 71797a158a7a25a0207a69b692adfedb 266 Gene3D G3DSA:3.50.30.50 193 250 2.8E-70 T 26-04-2016 RGE_RS00625 71797a158a7a25a0207a69b692adfedb 266 PANTHER PTHR31118:SF9 6 158 1.9E-46 T 26-04-2016 RGE_RS00625 71797a158a7a25a0207a69b692adfedb 266 PANTHER PTHR31118:SF9 192 256 1.9E-46 T 26-04-2016 RGE_RS00625 71797a158a7a25a0207a69b692adfedb 266 Pfam PF04199 Putative cyclase 7 158 3.0E-34 T 26-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 RGE_RS21025 9f24a43cb0dca6fad3f94874346c2267 366 Gene3D G3DSA:3.40.50.620 30 225 6.2E-72 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS21025 9f24a43cb0dca6fad3f94874346c2267 366 SMART SM00893 32 222 8.2E-46 T 26-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RGE_RS21025 9f24a43cb0dca6fad3f94874346c2267 366 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 298 324 - T 26-04-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site RGE_RS21025 9f24a43cb0dca6fad3f94874346c2267 366 PANTHER PTHR10909 164 366 1.9E-35 T 26-04-2016 RGE_RS21025 9f24a43cb0dca6fad3f94874346c2267 366 PANTHER PTHR10909:SF299 164 366 1.9E-35 T 26-04-2016 RGE_RS21025 9f24a43cb0dca6fad3f94874346c2267 366 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 234 317 4.0E-35 T 26-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal RGE_RS21025 9f24a43cb0dca6fad3f94874346c2267 366 PIRSF PIRSF000089 28 359 7.0E-110 T 26-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 RGE_RS21025 9f24a43cb0dca6fad3f94874346c2267 366 SUPERFAMILY SSF52402 30 226 5.86E-54 T 26-04-2016 RGE_RS21025 9f24a43cb0dca6fad3f94874346c2267 366 Gene3D G3DSA:3.40.50.1220 230 354 4.8E-53 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS21025 9f24a43cb0dca6fad3f94874346c2267 366 Pfam PF01012 Electron transfer flavoprotein domain 32 210 1.2E-43 T 26-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RGE_RS21025 9f24a43cb0dca6fad3f94874346c2267 366 SUPERFAMILY SSF52467 234 353 2.56E-45 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS12305 931807e60dfb6bb179617d2a89efd236 140 Pfam PF04143 Sulphur transport 40 129 8.5E-7 T 26-04-2016 IPR007272 Sulphur transport domain RGE_RS12305 931807e60dfb6bb179617d2a89efd236 140 PANTHER PTHR30574 14 138 6.4E-29 T 26-04-2016 RGE_RS12305 931807e60dfb6bb179617d2a89efd236 140 PANTHER PTHR30574:SF1 14 138 6.4E-29 T 26-04-2016 RGE_RS10810 558060394b599e250c2890f85e3ff34b 303 Pfam PF03466 LysR substrate binding domain 88 294 1.8E-53 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS10810 558060394b599e250c2890f85e3ff34b 303 SUPERFAMILY SSF53850 89 296 2.33E-52 T 26-04-2016 RGE_RS10810 558060394b599e250c2890f85e3ff34b 303 SUPERFAMILY SSF46785 4 112 1.28E-22 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10810 558060394b599e250c2890f85e3ff34b 303 PANTHER PTHR30537:SF5 1 301 5.2E-124 T 26-04-2016 RGE_RS10810 558060394b599e250c2890f85e3ff34b 303 PANTHER PTHR30537 1 301 5.2E-124 T 26-04-2016 RGE_RS10810 558060394b599e250c2890f85e3ff34b 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 8.5E-20 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS10810 558060394b599e250c2890f85e3ff34b 303 Gene3D G3DSA:1.10.10.10 4 87 9.9E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10810 558060394b599e250c2890f85e3ff34b 303 Gene3D G3DSA:3.40.190.10 92 176 1.7E-29 T 26-04-2016 RGE_RS10810 558060394b599e250c2890f85e3ff34b 303 Gene3D G3DSA:3.40.190.10 177 262 2.8E-24 T 26-04-2016 RGE_RS22965 7de16383e0087b5f9daa76191b637ba6 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 42 3.0E-14 T 26-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS22965 7de16383e0087b5f9daa76191b637ba6 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 26-04-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS22965 7de16383e0087b5f9daa76191b637ba6 44 Pfam PF00468 Ribosomal protein L34 1 44 7.8E-24 T 26-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS22965 7de16383e0087b5f9daa76191b637ba6 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 2.6E-24 T 26-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS22965 7de16383e0087b5f9daa76191b637ba6 44 PANTHER PTHR14503 1 44 1.7E-19 T 26-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS22965 7de16383e0087b5f9daa76191b637ba6 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.346 T 26-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS15045 9a64af7716b8b001d6c21566e3dc2201 411 PANTHER PTHR36577:SF1 1 408 1.7E-75 T 26-04-2016 RGE_RS15045 9a64af7716b8b001d6c21566e3dc2201 411 Pfam PF04412 Protein of unknown function (DUF521) 1 403 2.8E-110 T 26-04-2016 IPR007506 Domain of unknown function DUF521 RGE_RS15045 9a64af7716b8b001d6c21566e3dc2201 411 PANTHER PTHR36577 1 408 1.7E-75 T 26-04-2016 RGE_RS02775 ad630ac658dcc2be672add8d1e4041f5 195 SUPERFAMILY SSF48498 69 176 5.07E-21 T 26-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RGE_RS02775 ad630ac658dcc2be672add8d1e4041f5 195 Gene3D G3DSA:1.10.357.10 58 177 1.0E-28 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS08050 1b22592e09f371fc54867a809deac02e 63 SUPERFAMILY SSF46955 4 54 8.24E-9 T 26-04-2016 IPR009061 Putative DNA-binding domain RGE_RS08050 1b22592e09f371fc54867a809deac02e 63 Gene3D G3DSA:1.10.10.10 5 56 5.6E-9 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS08050 1b22592e09f371fc54867a809deac02e 63 Pfam PF12728 Helix-turn-helix domain 12 55 2.1E-6 T 26-04-2016 RGE_RS07715 eb50e10de21e1659fd8c4b440073f022 491 PANTHER PTHR22773 1 485 2.4E-203 T 26-04-2016 RGE_RS07715 eb50e10de21e1659fd8c4b440073f022 491 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 4 484 2.4E-187 T 26-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 RGE_RS07715 eb50e10de21e1659fd8c4b440073f022 491 Pfam PF00361 Proton-conducting membrane transporter 131 415 3.1E-81 T 26-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RGE_RS07715 eb50e10de21e1659fd8c4b440073f022 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 135 154 2.4E-49 T 26-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RGE_RS07715 eb50e10de21e1659fd8c4b440073f022 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 165 189 2.4E-49 T 26-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RGE_RS07715 eb50e10de21e1659fd8c4b440073f022 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 375 401 2.4E-49 T 26-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RGE_RS07715 eb50e10de21e1659fd8c4b440073f022 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 235 259 2.4E-49 T 26-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RGE_RS07715 eb50e10de21e1659fd8c4b440073f022 491 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 323 342 2.4E-49 T 26-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RGE_RS07715 eb50e10de21e1659fd8c4b440073f022 491 PANTHER PTHR22773:SF40 1 485 2.4E-203 T 26-04-2016 RGE_RS22930 c066365a5ca608b94ab2f7052021c2cb 666 SUPERFAMILY SSF116726 584 661 6.02E-9 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS22930 c066365a5ca608b94ab2f7052021c2cb 666 SUPERFAMILY SSF51735 418 557 5.66E-32 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS22930 c066365a5ca608b94ab2f7052021c2cb 666 Gene3D G3DSA:3.30.70.1450 591 662 1.9E-9 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS22930 c066365a5ca608b94ab2f7052021c2cb 666 Pfam PF02080 TrkA-C domain 595 662 1.5E-7 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS22930 c066365a5ca608b94ab2f7052021c2cb 666 Pfam PF02254 TrkA-N domain 421 534 6.6E-23 T 26-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RGE_RS22930 c066365a5ca608b94ab2f7052021c2cb 666 Pfam PF00999 Sodium/hydrogen exchanger family 8 382 4.3E-65 T 26-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RGE_RS22930 c066365a5ca608b94ab2f7052021c2cb 666 PANTHER PTHR16254 8 575 3.0E-164 T 26-04-2016 RGE_RS22930 c066365a5ca608b94ab2f7052021c2cb 666 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 12 295 4.5E-72 T 26-04-2016 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 RGE_RS22930 c066365a5ca608b94ab2f7052021c2cb 666 PANTHER PTHR16254:SF6 8 575 3.0E-164 T 26-04-2016 RGE_RS22930 c066365a5ca608b94ab2f7052021c2cb 666 Gene3D G3DSA:3.40.50.720 416 549 1.9E-34 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS12205 29f905c45ddf5cb5520f76a05d13cdac 179 PANTHER PTHR34582 1 163 3.2E-20 T 26-04-2016 RGE_RS12205 29f905c45ddf5cb5520f76a05d13cdac 179 Pfam PF04239 Protein of unknown function (DUF421) 101 160 2.1E-14 T 26-04-2016 IPR007353 Protein of unknown function DUF421 RGE_RS12205 29f905c45ddf5cb5520f76a05d13cdac 179 Gene3D G3DSA:3.30.240.20 94 160 5.4E-18 T 26-04-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain RGE_RS06505 5311709c088652cf28da46e97d7a5285 247 PIRSF PIRSF000883 1 247 3.0E-47 T 26-04-2016 IPR011152 Phosphoesterase MJ0912 RGE_RS06505 5311709c088652cf28da46e97d7a5285 247 SUPERFAMILY SSF56300 1 246 2.37E-52 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS06505 5311709c088652cf28da46e97d7a5285 247 Gene3D G3DSA:3.60.21.10 1 246 1.7E-65 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS06505 5311709c088652cf28da46e97d7a5285 247 PANTHER PTHR11124 184 247 7.3E-39 T 26-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 RGE_RS06505 5311709c088652cf28da46e97d7a5285 247 PANTHER PTHR11124 1 75 7.3E-39 T 26-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 RGE_RS06505 5311709c088652cf28da46e97d7a5285 247 PANTHER PTHR11124 94 162 7.3E-39 T 26-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 RGE_RS06505 5311709c088652cf28da46e97d7a5285 247 PANTHER PTHR11124:SF2 184 247 7.3E-39 T 26-04-2016 RGE_RS06505 5311709c088652cf28da46e97d7a5285 247 PANTHER PTHR11124:SF2 1 75 7.3E-39 T 26-04-2016 RGE_RS06505 5311709c088652cf28da46e97d7a5285 247 PANTHER PTHR11124:SF2 94 162 7.3E-39 T 26-04-2016 RGE_RS06505 5311709c088652cf28da46e97d7a5285 247 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 208 1.3E-24 T 26-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type RGE_RS18555 9bf599fb7a5fd216cdf0f0e11d0bec81 256 Gene3D G3DSA:3.40.50.720 7 255 6.7E-73 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS18555 9bf599fb7a5fd216cdf0f0e11d0bec81 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 192 0.0086 T 26-04-2016 RGE_RS18555 9bf599fb7a5fd216cdf0f0e11d0bec81 256 PANTHER PTHR24322 161 192 2.1E-35 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18555 9bf599fb7a5fd216cdf0f0e11d0bec81 256 PANTHER PTHR24322 12 145 2.1E-35 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18555 9bf599fb7a5fd216cdf0f0e11d0bec81 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 1.9E-28 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18555 9bf599fb7a5fd216cdf0f0e11d0bec81 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.9E-28 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18555 9bf599fb7a5fd216cdf0f0e11d0bec81 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.9E-28 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18555 9bf599fb7a5fd216cdf0f0e11d0bec81 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.9E-28 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18555 9bf599fb7a5fd216cdf0f0e11d0bec81 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 1.9E-28 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS18555 9bf599fb7a5fd216cdf0f0e11d0bec81 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 254 4.4E-53 T 26-04-2016 RGE_RS18555 9bf599fb7a5fd216cdf0f0e11d0bec81 256 SUPERFAMILY SSF51735 8 255 7.09E-69 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS05665 1664f75de1ec820d7388b0fb9e5755e7 124 Pfam PF04304 Protein of unknown function (DUF454) 9 123 1.0E-33 T 26-04-2016 IPR007401 Protein of unknown function DUF454 RGE_RS05665 1664f75de1ec820d7388b0fb9e5755e7 124 PANTHER PTHR35813 1 124 4.7E-23 T 26-04-2016 RGE_RS05665 1664f75de1ec820d7388b0fb9e5755e7 124 PIRSF PIRSF016789 7 124 1.3E-28 T 26-04-2016 IPR007401 Protein of unknown function DUF454 RGE_RS05665 1664f75de1ec820d7388b0fb9e5755e7 124 PANTHER PTHR35813:SF1 1 124 4.7E-23 T 26-04-2016 RGE_RS07320 999fe0d446c09e304efa05b969fc40c7 250 SUPERFAMILY SSF161098 13 234 3.27E-36 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS07320 999fe0d446c09e304efa05b969fc40c7 250 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 62 242 5.9E-16 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS07320 999fe0d446c09e304efa05b969fc40c7 250 Gene3D G3DSA:1.10.3720.10 13 243 3.4E-47 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS07320 999fe0d446c09e304efa05b969fc40c7 250 PANTHER PTHR30614 1 242 1.0E-71 T 26-04-2016 RGE_RS13470 c45669ca00e0104d4fc63b2861c62af8 366 SUPERFAMILY SSF52540 54 212 2.48E-14 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13470 c45669ca00e0104d4fc63b2861c62af8 366 Gene3D G3DSA:3.40.50.300 41 189 9.3E-18 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS13470 c45669ca00e0104d4fc63b2861c62af8 366 Pfam PF03969 AFG1-like ATPase 5 355 4.5E-124 T 26-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 RGE_RS13470 c45669ca00e0104d4fc63b2861c62af8 366 PANTHER PTHR12169 5 360 6.4E-145 T 26-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 RGE_RS13470 c45669ca00e0104d4fc63b2861c62af8 366 PANTHER PTHR12169:SF11 5 360 6.4E-145 T 26-04-2016 RGE_RS21740 7543d66cbbe6f12bae8cacaa2691a047 1259 PANTHER PTHR23304:SF96 28 1256 0.0 T 26-04-2016 RGE_RS21740 7543d66cbbe6f12bae8cacaa2691a047 1259 TIGRFAM TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit 1 1244 0.0 T 26-04-2016 IPR011953 Cobaltochelatase, CobN subunit GO:0009236|GO:0051116 RGE_RS21740 7543d66cbbe6f12bae8cacaa2691a047 1259 PANTHER PTHR23304 28 1256 0.0 T 26-04-2016 RGE_RS21740 7543d66cbbe6f12bae8cacaa2691a047 1259 Pfam PF02514 CobN/Magnesium Chelatase 141 1238 0.0 T 26-04-2016 IPR003672 CobN/magnesium chelatase GO:0009058 RGE_RS02590 ea82f69167c96fe2f7f6ffd7b15f31ba 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 8.6E-15 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS02590 ea82f69167c96fe2f7f6ffd7b15f31ba 316 SUPERFAMILY SSF46785 1 108 3.13E-17 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02590 ea82f69167c96fe2f7f6ffd7b15f31ba 316 Gene3D G3DSA:3.40.190.10 177 265 1.6E-13 T 26-04-2016 RGE_RS02590 ea82f69167c96fe2f7f6ffd7b15f31ba 316 Gene3D G3DSA:3.40.190.10 91 176 1.6E-10 T 26-04-2016 RGE_RS02590 ea82f69167c96fe2f7f6ffd7b15f31ba 316 SUPERFAMILY SSF53850 89 299 2.02E-31 T 26-04-2016 RGE_RS02590 ea82f69167c96fe2f7f6ffd7b15f31ba 316 Pfam PF03466 LysR substrate binding domain 87 295 4.6E-32 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS02590 ea82f69167c96fe2f7f6ffd7b15f31ba 316 PANTHER PTHR30126 1 310 1.2E-46 T 26-04-2016 RGE_RS02590 ea82f69167c96fe2f7f6ffd7b15f31ba 316 Gene3D G3DSA:1.10.10.10 1 86 3.1E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS02115 77d730910fe6eb9cd1cadc968a7daf91 309 Gene3D G3DSA:3.90.550.10 7 224 1.6E-60 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS02115 77d730910fe6eb9cd1cadc968a7daf91 309 Pfam PF00535 Glycosyl transferase family 2 10 135 2.2E-33 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS02115 77d730910fe6eb9cd1cadc968a7daf91 309 PANTHER PTHR22916 1 279 1.1E-60 T 26-04-2016 RGE_RS02115 77d730910fe6eb9cd1cadc968a7daf91 309 SUPERFAMILY SSF53448 7 219 9.64E-58 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS10165 edf90666577a94a6e20568fd3074a26c 666 Pfam PF00593 TonB dependent receptor 442 664 4.5E-24 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS10165 edf90666577a94a6e20568fd3074a26c 666 SUPERFAMILY SSF56935 32 666 1.49E-92 T 26-04-2016 RGE_RS10165 edf90666577a94a6e20568fd3074a26c 666 Gene3D G3DSA:2.170.130.10 23 154 3.6E-31 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS10165 edf90666577a94a6e20568fd3074a26c 666 Gene3D G3DSA:2.40.170.20 155 666 1.1E-68 T 26-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RGE_RS10165 edf90666577a94a6e20568fd3074a26c 666 PANTHER PTHR32552 8 666 6.1E-51 T 26-04-2016 RGE_RS10165 edf90666577a94a6e20568fd3074a26c 666 Pfam PF07715 TonB-dependent Receptor Plug Domain 50 148 2.8E-18 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS09900 a1042ac1f5168cc74c1ce958c241a6e8 213 SUPERFAMILY SSF89155 8 205 9.16E-50 T 26-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RGE_RS09900 a1042ac1f5168cc74c1ce958c241a6e8 213 Pfam PF02613 Nitrate reductase delta subunit 65 172 7.2E-27 T 26-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RGE_RS09900 a1042ac1f5168cc74c1ce958c241a6e8 213 PANTHER PTHR34227 7 199 6.0E-54 T 26-04-2016 RGE_RS09900 a1042ac1f5168cc74c1ce958c241a6e8 213 PANTHER PTHR34227:SF5 7 199 6.0E-54 T 26-04-2016 RGE_RS09900 a1042ac1f5168cc74c1ce958c241a6e8 213 Gene3D G3DSA:1.10.3480.10 11 207 7.3E-57 T 26-04-2016 IPR020945 DMSO/Nitrate reductase chaperone RGE_RS09900 a1042ac1f5168cc74c1ce958c241a6e8 213 PIRSF PIRSF004690 8 206 1.3E-51 T 26-04-2016 IPR026269 Tat proofreading chaperone DmsD-type RGE_RS17870 14865d3a3df64722fb1888a2f81a49ac 180 PANTHER PTHR28026:SF3 1 168 1.7E-31 T 26-04-2016 RGE_RS17870 14865d3a3df64722fb1888a2f81a49ac 180 PANTHER PTHR28026 1 168 1.7E-31 T 26-04-2016 RGE_RS17870 14865d3a3df64722fb1888a2f81a49ac 180 Pfam PF06127 Protein of unknown function (DUF962) 10 151 4.2E-20 T 26-04-2016 IPR009305 Protein of unknown function DUF962 RGE_RS09255 cfdfb844d998bbc1c7d2330468131f16 95 SUPERFAMILY SSF47413 6 75 3.49E-12 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS09255 cfdfb844d998bbc1c7d2330468131f16 95 SMART SM00530 16 71 2.4E-8 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS09255 cfdfb844d998bbc1c7d2330468131f16 95 Pfam PF01381 Helix-turn-helix 17 68 1.2E-8 T 26-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RGE_RS09255 cfdfb844d998bbc1c7d2330468131f16 95 Gene3D G3DSA:1.10.260.40 4 79 9.7E-19 T 26-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RGE_RS03570 4d2b3f7ddad483f6699902f831f00b3c 465 Gene3D G3DSA:3.40.605.10 8 222 3.5E-52 T 26-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RGE_RS03570 4d2b3f7ddad483f6699902f831f00b3c 465 PIRSF PIRSF036492 1 465 1.3E-163 T 26-04-2016 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0004030|GO:0006081|GO:0055114 RGE_RS03570 4d2b3f7ddad483f6699902f831f00b3c 465 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 207 214 - T 26-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RGE_RS03570 4d2b3f7ddad483f6699902f831f00b3c 465 Pfam PF00171 Aldehyde dehydrogenase family 21 432 8.2E-91 T 26-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RGE_RS03570 4d2b3f7ddad483f6699902f831f00b3c 465 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 235 246 - T 26-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RGE_RS03570 4d2b3f7ddad483f6699902f831f00b3c 465 Gene3D G3DSA:3.40.309.10 223 414 3.9E-58 T 26-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RGE_RS03570 4d2b3f7ddad483f6699902f831f00b3c 465 PANTHER PTHR11699 23 464 1.3E-149 T 26-04-2016 RGE_RS03570 4d2b3f7ddad483f6699902f831f00b3c 465 SUPERFAMILY SSF53720 5 436 5.24E-118 T 26-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RGE_RS14530 046fc4c0967cf2b049311dea0d07ff99 326 PANTHER PTHR30349 1 291 3.2E-111 T 26-04-2016 RGE_RS14530 046fc4c0967cf2b049311dea0d07ff99 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 321 3.6E-92 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS14530 046fc4c0967cf2b049311dea0d07ff99 326 PANTHER PTHR30349:SF16 1 291 3.2E-111 T 26-04-2016 RGE_RS14530 046fc4c0967cf2b049311dea0d07ff99 326 PIRSF PIRSF017082 1 326 1.2E-84 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS14530 046fc4c0967cf2b049311dea0d07ff99 326 SUPERFAMILY SSF53850 113 289 2.04E-15 T 26-04-2016 RGE_RS19685 efb6b423b42bb9776c4b292afdf3d349 229 Gene3D G3DSA:3.40.50.1950 43 207 1.6E-16 T 26-04-2016 IPR003382 Flavoprotein GO:0003824 RGE_RS19685 efb6b423b42bb9776c4b292afdf3d349 229 SUPERFAMILY SSF52507 44 207 7.85E-18 T 26-04-2016 IPR003382 Flavoprotein GO:0003824 RGE_RS19685 efb6b423b42bb9776c4b292afdf3d349 229 Pfam PF02441 Flavoprotein 44 167 2.2E-11 T 26-04-2016 IPR003382 Flavoprotein GO:0003824 RGE_RS23420 fbf021c2897d265898acf5b4a75ec077 254 PANTHER PTHR22916 7 228 2.3E-63 T 26-04-2016 RGE_RS23420 fbf021c2897d265898acf5b4a75ec077 254 Gene3D G3DSA:3.90.550.10 7 228 1.6E-42 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS23420 fbf021c2897d265898acf5b4a75ec077 254 SUPERFAMILY SSF53448 7 210 7.58E-46 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS23420 fbf021c2897d265898acf5b4a75ec077 254 Pfam PF00535 Glycosyl transferase family 2 8 150 2.8E-22 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS23420 fbf021c2897d265898acf5b4a75ec077 254 PANTHER PTHR22916:SF4 7 228 2.3E-63 T 26-04-2016 RGE_RS21920 077a95da88b1a9802d260518f3606083 330 Gene3D G3DSA:3.90.550.10 11 185 1.7E-29 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS21920 077a95da88b1a9802d260518f3606083 330 Pfam PF00535 Glycosyl transferase family 2 15 179 1.8E-27 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS21920 077a95da88b1a9802d260518f3606083 330 SUPERFAMILY SSF53448 10 268 3.94E-49 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS21920 077a95da88b1a9802d260518f3606083 330 PANTHER PTHR10859 1 320 5.5E-109 T 26-04-2016 RGE_RS21920 077a95da88b1a9802d260518f3606083 330 PANTHER PTHR10859:SF49 1 320 5.5E-109 T 26-04-2016 RGE_RS07020 16acd34a87f3b764ae8e9f6147a3775b 173 Gene3D G3DSA:3.30.420.10 13 161 2.0E-8 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS07020 16acd34a87f3b764ae8e9f6147a3775b 173 SUPERFAMILY SSF53098 14 161 2.11E-13 T 26-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RGE_RS02215 b3044749d69f116f09b33436d87350a6 107 PANTHER PTHR33909 1 107 1.6E-26 T 26-04-2016 RGE_RS02215 b3044749d69f116f09b33436d87350a6 107 SMART SM01323 19 101 4.3E-40 T 26-04-2016 IPR003849 Preprotein translocase YajC RGE_RS02215 b3044749d69f116f09b33436d87350a6 107 PANTHER PTHR33909:SF1 1 107 1.6E-26 T 26-04-2016 RGE_RS02215 b3044749d69f116f09b33436d87350a6 107 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 20 101 7.4E-27 T 26-04-2016 IPR003849 Preprotein translocase YajC RGE_RS02215 b3044749d69f116f09b33436d87350a6 107 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 1.2E-15 T 26-04-2016 IPR003849 Preprotein translocase YajC RGE_RS02215 b3044749d69f116f09b33436d87350a6 107 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 1.2E-15 T 26-04-2016 IPR003849 Preprotein translocase YajC RGE_RS02215 b3044749d69f116f09b33436d87350a6 107 Pfam PF02699 Preprotein translocase subunit 23 97 3.6E-28 T 26-04-2016 IPR003849 Preprotein translocase YajC RGE_RS07725 b05ed0af2a7713ee5d2b13c98308894d 201 SUPERFAMILY SSF55811 18 183 5.01E-45 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS07725 b05ed0af2a7713ee5d2b13c98308894d 201 Gene3D G3DSA:3.90.79.10 12 183 5.4E-49 T 26-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RGE_RS07725 b05ed0af2a7713ee5d2b13c98308894d 201 ProSitePatterns PS00893 Nudix box signature. 83 104 - T 26-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RGE_RS07725 b05ed0af2a7713ee5d2b13c98308894d 201 PANTHER PTHR11839:SF9 20 179 3.9E-48 T 26-04-2016 RGE_RS07725 b05ed0af2a7713ee5d2b13c98308894d 201 Pfam PF00293 NUDIX domain 49 159 5.4E-18 T 26-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RGE_RS07725 b05ed0af2a7713ee5d2b13c98308894d 201 PANTHER PTHR11839 20 179 3.9E-48 T 26-04-2016 RGE_RS19760 56da559d09e9f07aceb96d88b5339167 215 Gene3D G3DSA:3.30.2010.10 52 120 7.5E-5 T 26-04-2016 RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 7.1E-5 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 7.1E-5 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 7.1E-5 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 Gene3D G3DSA:3.40.50.720 4 257 5.9E-56 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 PANTHER PTHR24319 1 256 2.8E-52 T 26-04-2016 RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 256 4.1E-36 T 26-04-2016 RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 SUPERFAMILY SSF51735 7 257 3.43E-56 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 PANTHER PTHR24319:SF23 1 256 2.8E-52 T 26-04-2016 RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 4.0E-22 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 4.0E-22 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 4.0E-22 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 4.0E-22 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 4.0E-22 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS10615 cf82b42407219c6b2fa415a036953578 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.0E-22 T 26-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RGE_RS00250 2bad911698e9e4a9e3ec3750d09b70f2 63 Pfam PF11127 Protein of unknown function (DUF2892) 1 61 7.0E-22 T 26-04-2016 IPR021309 Protein of unknown function DUF2892 RGE_RS22705 189d1bf21e7fb28c0c831bb310e53802 230 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 12 187 1.8E-68 T 26-04-2016 IPR022301 Integral membrane protein YjbE RGE_RS22705 189d1bf21e7fb28c0c831bb310e53802 230 PANTHER PTHR30060 1 203 1.3E-42 T 26-04-2016 RGE_RS22705 189d1bf21e7fb28c0c831bb310e53802 230 Pfam PF03741 Integral membrane protein TerC family 15 186 1.5E-45 T 26-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 PRINTS PR00113 Alkaline phosphatase signature 181 196 1.5E-37 T 26-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 PRINTS PR00113 Alkaline phosphatase signature 358 387 1.5E-37 T 26-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 PRINTS PR00113 Alkaline phosphatase signature 225 245 1.5E-37 T 26-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 PRINTS PR00113 Alkaline phosphatase signature 125 145 1.5E-37 T 26-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 PRINTS PR00113 Alkaline phosphatase signature 269 279 1.5E-37 T 26-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 SUPERFAMILY SSF53649 111 503 1.87E-115 T 26-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 SUPERFAMILY SSF53649 534 586 1.87E-115 T 26-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 SMART SM00098 126 585 3.4E-48 T 26-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 Pfam PF00245 Alkaline phosphatase 125 583 2.1E-80 T 26-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 Gene3D G3DSA:3.40.720.10 110 468 1.2E-121 T 26-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 Gene3D G3DSA:3.40.720.10 509 590 1.2E-121 T 26-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 PANTHER PTHR11596 109 482 3.8E-117 T 26-04-2016 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 PANTHER PTHR11596 519 596 3.8E-117 T 26-04-2016 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 PANTHER PTHR11596:SF5 109 482 3.8E-117 T 26-04-2016 RGE_RS19320 ce62ba12c38ab722fff9df9296cdefd9 603 PANTHER PTHR11596:SF5 519 596 3.8E-117 T 26-04-2016 RGE_RS03430 7f68de84495796e1b6520ac3b0106dc4 564 Pfam PF00733 Asparagine synthase 192 537 6.2E-23 T 26-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RGE_RS03430 7f68de84495796e1b6520ac3b0106dc4 564 Gene3D G3DSA:3.40.50.620 399 515 4.1E-24 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS03430 7f68de84495796e1b6520ac3b0106dc4 564 Gene3D G3DSA:3.40.50.620 168 320 4.1E-24 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS03430 7f68de84495796e1b6520ac3b0106dc4 564 SUPERFAMILY SSF56235 45 145 2.32E-5 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS03430 7f68de84495796e1b6520ac3b0106dc4 564 Gene3D G3DSA:3.60.20.10 44 151 5.1E-8 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS03430 7f68de84495796e1b6520ac3b0106dc4 564 SUPERFAMILY SSF52402 162 318 2.43E-30 T 26-04-2016 RGE_RS03430 7f68de84495796e1b6520ac3b0106dc4 564 SUPERFAMILY SSF52402 393 518 2.43E-30 T 26-04-2016 RGE_RS21400 36c07da013188d2a5f5d081c73a058f0 219 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 143 217 2.6E-15 T 26-04-2016 IPR006260 TonB, C-terminal GO:0006810 RGE_RS21400 36c07da013188d2a5f5d081c73a058f0 219 SUPERFAMILY SSF74653 107 218 1.02E-18 T 26-04-2016 RGE_RS21400 36c07da013188d2a5f5d081c73a058f0 219 Gene3D G3DSA:3.30.1150.10 123 218 3.9E-14 T 26-04-2016 RGE_RS21400 36c07da013188d2a5f5d081c73a058f0 219 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 144 217 1.4E-17 T 26-04-2016 IPR006260 TonB, C-terminal GO:0006810 RGE_RS10590 008f83b2893f8e816497a3e6305a1aa9 153 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 10 146 5.7E-22 T 26-04-2016 IPR009936 Protein of unknown function DUF1468 RGE_RS00705 17105e7e464f15f0e0b2526027bbf310 411 SUPERFAMILY SSF103473 22 404 4.84E-51 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS00705 17105e7e464f15f0e0b2526027bbf310 411 PANTHER PTHR23502:SF19 22 404 4.2E-66 T 26-04-2016 RGE_RS00705 17105e7e464f15f0e0b2526027bbf310 411 Pfam PF07690 Major Facilitator Superfamily 29 366 4.2E-38 T 26-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RGE_RS00705 17105e7e464f15f0e0b2526027bbf310 411 Gene3D G3DSA:1.20.1250.20 220 401 1.1E-4 T 26-04-2016 RGE_RS00705 17105e7e464f15f0e0b2526027bbf310 411 Gene3D G3DSA:1.20.1250.20 26 204 1.3E-26 T 26-04-2016 RGE_RS00705 17105e7e464f15f0e0b2526027bbf310 411 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 24 391 2.4E-60 T 26-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 RGE_RS00705 17105e7e464f15f0e0b2526027bbf310 411 PANTHER PTHR23502 22 404 4.2E-66 T 26-04-2016 RGE_RS03020 3fe4c068ff78f1a5a8ca0282e68c777f 161 Pfam PF10116 Protein required for attachment to host cells 7 150 3.2E-37 T 26-04-2016 IPR019291 Host attachment protein RGE_RS08385 25b35b06e605e9eeee5d5ee3a4c31def 260 Gene3D G3DSA:3.40.50.150 106 180 2.3E-9 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS08385 25b35b06e605e9eeee5d5ee3a4c31def 260 PANTHER PTHR13610:SF9 58 245 3.6E-29 T 26-04-2016 RGE_RS08385 25b35b06e605e9eeee5d5ee3a4c31def 260 PANTHER PTHR13610 58 245 3.6E-29 T 26-04-2016 IPR026170 FAM173 family RGE_RS08385 25b35b06e605e9eeee5d5ee3a4c31def 260 SUPERFAMILY SSF53335 101 237 8.96E-15 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS13510 33889bd287b0b1fb3292d9c5d75dd765 317 Pfam PF03060 Nitronate monooxygenase 78 239 8.5E-17 T 26-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RGE_RS13510 33889bd287b0b1fb3292d9c5d75dd765 317 PANTHER PTHR32332 1 313 1.8E-153 T 26-04-2016 RGE_RS13510 33889bd287b0b1fb3292d9c5d75dd765 317 Gene3D G3DSA:3.20.20.70 8 299 1.3E-40 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS13510 33889bd287b0b1fb3292d9c5d75dd765 317 PANTHER PTHR32332:SF21 1 313 1.8E-153 T 26-04-2016 RGE_RS13510 33889bd287b0b1fb3292d9c5d75dd765 317 SUPERFAMILY SSF51412 8 277 1.26E-55 T 26-04-2016 RGE_RS09475 1d4031f05aefdcbda57eb1ffd4ee35a4 188 Pfam PF01184 GPR1/FUN34/yaaH family 4 178 2.1E-41 T 26-04-2016 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 RGE_RS09475 1d4031f05aefdcbda57eb1ffd4ee35a4 188 PANTHER PTHR30178:SF6 9 187 1.5E-105 T 26-04-2016 RGE_RS09475 1d4031f05aefdcbda57eb1ffd4ee35a4 188 ProSitePatterns PS01114 GPR1/FUN34/yaaH family signature. 10 19 - T 26-04-2016 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 RGE_RS09475 1d4031f05aefdcbda57eb1ffd4ee35a4 188 PANTHER PTHR30178 9 187 1.5E-105 T 26-04-2016 RGE_RS07430 0959e1ec15dfe7f671dfa8cbaae98588 131 Gene3D G3DSA:3.30.1330.80 1 130 3.5E-37 T 26-04-2016 RGE_RS07430 0959e1ec15dfe7f671dfa8cbaae98588 131 PANTHER PTHR34988 6 131 8.6E-27 T 26-04-2016 RGE_RS07430 0959e1ec15dfe7f671dfa8cbaae98588 131 Pfam PF03479 Domain of unknown function (DUF296) 4 106 6.2E-20 T 26-04-2016 IPR005175 PPC domain RGE_RS07430 0959e1ec15dfe7f671dfa8cbaae98588 131 SUPERFAMILY SSF117856 1 129 1.2E-32 T 26-04-2016 RGE_RS02240 dd23d0b4623a30f44811eba7151c41f1 363 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 80 291 8.0E-77 T 26-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 RGE_RS02240 dd23d0b4623a30f44811eba7151c41f1 363 SUPERFAMILY SSF102405 85 292 4.73E-48 T 26-04-2016 RGE_RS02240 dd23d0b4623a30f44811eba7151c41f1 363 PANTHER PTHR32039 56 363 2.3E-104 T 26-04-2016 RGE_RS02240 dd23d0b4623a30f44811eba7151c41f1 363 PANTHER PTHR32039:SF8 56 363 2.3E-104 T 26-04-2016 RGE_RS02240 dd23d0b4623a30f44811eba7151c41f1 363 Gene3D G3DSA:3.40.50.450 117 293 1.3E-18 T 26-04-2016 RGE_RS02240 dd23d0b4623a30f44811eba7151c41f1 363 Pfam PF02481 DNA recombination-mediator protein A 81 282 2.1E-78 T 26-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 RGE_RS01130 7e6f487edb80bd18743d5494b4a607db 710 PANTHER PTHR32234 49 708 3.9E-157 T 26-04-2016 RGE_RS01130 7e6f487edb80bd18743d5494b4a607db 710 PANTHER PTHR32234:SF3 49 708 3.9E-157 T 26-04-2016 RGE_RS01130 7e6f487edb80bd18743d5494b4a607db 710 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 310 481 2.0E-8 T 26-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 RGE_RS01130 7e6f487edb80bd18743d5494b4a607db 710 Pfam PF11412 Disulphide bond corrector protein DsbC 50 157 2.7E-21 T 26-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain RGE_RS01130 7e6f487edb80bd18743d5494b4a607db 710 ProSitePatterns PS00194 Thioredoxin family active site. 612 630 - T 26-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RGE_RS01130 7e6f487edb80bd18743d5494b4a607db 710 Gene3D G3DSA:3.40.30.10 592 701 8.4E-19 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS01130 7e6f487edb80bd18743d5494b4a607db 710 SUPERFAMILY SSF52833 593 701 5.23E-16 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS01130 7e6f487edb80bd18743d5494b4a607db 710 Pfam PF13899 Thioredoxin-like 593 679 4.1E-22 T 26-04-2016 RGE_RS03855 3fce37519e2fee78791914e40471d3a0 733 SUPERFAMILY SSF52151 33 105 2.51E-47 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS03855 3fce37519e2fee78791914e40471d3a0 733 SUPERFAMILY SSF52151 135 257 2.51E-47 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS03855 3fce37519e2fee78791914e40471d3a0 733 PANTHER PTHR14226:SF37 32 124 4.2E-63 T 26-04-2016 RGE_RS03855 3fce37519e2fee78791914e40471d3a0 733 PANTHER PTHR14226:SF37 140 464 4.2E-63 T 26-04-2016 RGE_RS03855 3fce37519e2fee78791914e40471d3a0 733 Pfam PF01734 Patatin-like phospholipase 38 228 1.1E-25 T 26-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RGE_RS03855 3fce37519e2fee78791914e40471d3a0 733 PANTHER PTHR14226 32 124 4.2E-63 T 26-04-2016 RGE_RS03855 3fce37519e2fee78791914e40471d3a0 733 PANTHER PTHR14226 140 464 4.2E-63 T 26-04-2016 RGE_RS03855 3fce37519e2fee78791914e40471d3a0 733 Gene3D G3DSA:3.40.1090.10 38 226 6.2E-12 T 26-04-2016 RGE_RS16290 1afeb359508eebc4dab8eae3ba2c65fe 279 Gene3D G3DSA:3.40.50.280 158 275 8.9E-12 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS16290 1afeb359508eebc4dab8eae3ba2c65fe 279 SUPERFAMILY SSF52242 151 273 4.19E-17 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS16290 1afeb359508eebc4dab8eae3ba2c65fe 279 Pfam PF02310 B12 binding domain 153 264 2.1E-17 T 26-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RGE_RS20465 261f1b56de4154fedf780e4b16f5a820 434 Pfam PF07969 Amidohydrolase family 66 431 7.4E-10 T 26-04-2016 IPR013108 Amidohydrolase 3 RGE_RS20465 261f1b56de4154fedf780e4b16f5a820 434 Gene3D G3DSA:2.30.40.10 2 68 1.2E-15 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS20465 261f1b56de4154fedf780e4b16f5a820 434 SUPERFAMILY SSF51338 1 54 3.88E-25 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS20465 261f1b56de4154fedf780e4b16f5a820 434 SUPERFAMILY SSF51338 372 432 3.88E-25 T 26-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RGE_RS20465 261f1b56de4154fedf780e4b16f5a820 434 Gene3D G3DSA:3.20.20.140 69 393 1.1E-80 T 26-04-2016 RGE_RS20465 261f1b56de4154fedf780e4b16f5a820 434 PANTHER PTHR11647 1 432 6.4E-114 T 26-04-2016 RGE_RS20465 261f1b56de4154fedf780e4b16f5a820 434 PANTHER PTHR11647:SF70 1 432 6.4E-114 T 26-04-2016 RGE_RS20465 261f1b56de4154fedf780e4b16f5a820 434 SUPERFAMILY SSF51556 55 361 2.26E-80 T 26-04-2016 IPR032466 Metal-dependent hydrolase RGE_RS17140 e48c665f14d4115c4f3f59eb9c88343a 137 PANTHER PTHR35175 42 119 2.4E-22 T 26-04-2016 RGE_RS17140 e48c665f14d4115c4f3f59eb9c88343a 137 Pfam PF12512 Protein of unknown function (DUF3717) 3 67 5.6E-28 T 26-04-2016 IPR022191 Protein of unknown function DUF3717 RGE_RS17140 e48c665f14d4115c4f3f59eb9c88343a 137 PANTHER PTHR35175:SF2 42 119 2.4E-22 T 26-04-2016 RGE_RS17140 e48c665f14d4115c4f3f59eb9c88343a 137 Pfam PF06945 Protein of unknown function (DUF1289) 74 118 3.2E-18 T 26-04-2016 IPR010710 Protein of unknown function DUF1289 RGE_RS19035 d7dd5c0cf30861dfd203ba4feea5c2eb 199 Gene3D G3DSA:3.30.700.10 13 43 1.8E-5 T 26-04-2016 RGE_RS19035 d7dd5c0cf30861dfd203ba4feea5c2eb 199 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS19035 d7dd5c0cf30861dfd203ba4feea5c2eb 199 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 31 1.2E-6 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS19035 d7dd5c0cf30861dfd203ba4feea5c2eb 199 SUPERFAMILY SSF54523 13 104 1.57E-13 T 26-04-2016 RGE_RS19035 d7dd5c0cf30861dfd203ba4feea5c2eb 199 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 7 30 9.9E-7 T 26-04-2016 IPR012902 Prokaryotic N-terminal methylation site RGE_RS12590 0db0a8e873e096a617fb7e0efc5eca80 1269 Pfam PF06761 Intracellular multiplication and human macrophage-killing 488 833 4.5E-92 T 26-04-2016 IPR009612 ImcF-related RGE_RS12590 0db0a8e873e096a617fb7e0efc5eca80 1269 PANTHER PTHR36153:SF1 25 551 7.9E-141 T 26-04-2016 RGE_RS12590 0db0a8e873e096a617fb7e0efc5eca80 1269 PANTHER PTHR36153:SF1 583 1153 7.9E-141 T 26-04-2016 RGE_RS12590 0db0a8e873e096a617fb7e0efc5eca80 1269 Pfam PF06744 Type VI secretion protein IcmF C-terminal 973 1184 2.0E-45 T 26-04-2016 IPR010623 Type VI secretion system IcmF, C-terminal RGE_RS12590 0db0a8e873e096a617fb7e0efc5eca80 1269 Pfam PF14331 ImcF-related N-terminal domain 183 440 1.2E-83 T 26-04-2016 IPR025743 ImcF-related, N-terminal domain RGE_RS12590 0db0a8e873e096a617fb7e0efc5eca80 1269 PANTHER PTHR36153 25 551 7.9E-141 T 26-04-2016 RGE_RS12590 0db0a8e873e096a617fb7e0efc5eca80 1269 PANTHER PTHR36153 583 1153 7.9E-141 T 26-04-2016 RGE_RS12590 0db0a8e873e096a617fb7e0efc5eca80 1269 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 27 1217 1.2E-208 T 26-04-2016 IPR017731 Type VI secretion system, IcmF RGE_RS12590 0db0a8e873e096a617fb7e0efc5eca80 1269 SUPERFAMILY SSF52540 118 282 1.9E-8 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS11735 ceec3621117385f2adfbd1aa273186c4 146 Pfam PF00856 SET domain 30 125 2.4E-13 T 26-04-2016 IPR001214 SET domain GO:0005515 RGE_RS11735 ceec3621117385f2adfbd1aa273186c4 146 PANTHER PTHR22884 16 137 3.7E-19 T 26-04-2016 RGE_RS11735 ceec3621117385f2adfbd1aa273186c4 146 PANTHER PTHR22884:SF336 16 137 3.7E-19 T 26-04-2016 RGE_RS11735 ceec3621117385f2adfbd1aa273186c4 146 SUPERFAMILY SSF82199 13 144 6.8E-33 T 26-04-2016 RGE_RS11735 ceec3621117385f2adfbd1aa273186c4 146 Gene3D G3DSA:2.170.270.10 15 146 2.7E-28 T 26-04-2016 RGE_RS11735 ceec3621117385f2adfbd1aa273186c4 146 SMART SM00317 17 131 1.1E-21 T 26-04-2016 IPR001214 SET domain GO:0005515 RGE_RS08500 87a514dd5eac32024d170fa1309671e1 287 PANTHER PTHR11614 13 268 4.6E-24 T 26-04-2016 RGE_RS08500 87a514dd5eac32024d170fa1309671e1 287 PANTHER PTHR11614:SF89 13 268 4.6E-24 T 26-04-2016 RGE_RS08500 87a514dd5eac32024d170fa1309671e1 287 PIRSF PIRSF017388 4 268 2.8E-36 T 26-04-2016 IPR012354 Esterase/lipase GO:0052689 RGE_RS08500 87a514dd5eac32024d170fa1309671e1 287 Gene3D G3DSA:3.40.50.1820 5 265 3.5E-39 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS08500 87a514dd5eac32024d170fa1309671e1 287 Pfam PF12146 Serine aminopeptidase, S33 17 250 5.9E-13 T 26-04-2016 IPR022742 Serine aminopeptidase, S33 RGE_RS08500 87a514dd5eac32024d170fa1309671e1 287 SUPERFAMILY SSF53474 13 264 9.84E-31 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS17540 c6621c70ee600c05fca1c6638351c442 484 PANTHER PTHR11993:SF26 3 115 1.5E-114 T 26-04-2016 RGE_RS17540 c6621c70ee600c05fca1c6638351c442 484 PANTHER PTHR11993:SF26 311 484 1.5E-114 T 26-04-2016 RGE_RS17540 c6621c70ee600c05fca1c6638351c442 484 PANTHER PTHR11993:SF26 136 204 1.5E-114 T 26-04-2016 RGE_RS17540 c6621c70ee600c05fca1c6638351c442 484 Pfam PF00374 Nickel-dependent hydrogenase 38 118 7.3E-17 T 26-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 RGE_RS17540 c6621c70ee600c05fca1c6638351c442 484 Pfam PF00374 Nickel-dependent hydrogenase 143 484 2.1E-49 T 26-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 RGE_RS17540 c6621c70ee600c05fca1c6638351c442 484 PANTHER PTHR11993 3 115 1.5E-114 T 26-04-2016 RGE_RS17540 c6621c70ee600c05fca1c6638351c442 484 PANTHER PTHR11993 311 484 1.5E-114 T 26-04-2016 RGE_RS17540 c6621c70ee600c05fca1c6638351c442 484 PANTHER PTHR11993 136 204 1.5E-114 T 26-04-2016 RGE_RS17540 c6621c70ee600c05fca1c6638351c442 484 SUPERFAMILY SSF56762 3 201 1.83E-131 T 26-04-2016 IPR029014 NiFe hydrogenase-like RGE_RS17540 c6621c70ee600c05fca1c6638351c442 484 SUPERFAMILY SSF56762 230 484 1.83E-131 T 26-04-2016 IPR029014 NiFe hydrogenase-like RGE_RS17540 c6621c70ee600c05fca1c6638351c442 484 Gene3D G3DSA:1.10.645.10 1 484 1.8E-135 T 26-04-2016 IPR029014 NiFe hydrogenase-like RGE_RS17540 c6621c70ee600c05fca1c6638351c442 484 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 38 63 - T 26-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 RGE_RS03635 3137f9a01f7d51e082763872724058a3 413 PANTHER PTHR32332 97 406 3.5E-87 T 26-04-2016 RGE_RS03635 3137f9a01f7d51e082763872724058a3 413 PANTHER PTHR32332 20 67 3.5E-87 T 26-04-2016 RGE_RS03635 3137f9a01f7d51e082763872724058a3 413 SUPERFAMILY SSF51412 32 81 2.14E-38 T 26-04-2016 RGE_RS03635 3137f9a01f7d51e082763872724058a3 413 SUPERFAMILY SSF51412 114 359 2.14E-38 T 26-04-2016 RGE_RS03635 3137f9a01f7d51e082763872724058a3 413 Pfam PF03060 Nitronate monooxygenase 33 397 8.0E-35 T 26-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RGE_RS03635 3137f9a01f7d51e082763872724058a3 413 Gene3D G3DSA:3.20.20.70 5 315 2.3E-40 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS03635 3137f9a01f7d51e082763872724058a3 413 PANTHER PTHR32332:SF18 97 406 3.5E-87 T 26-04-2016 RGE_RS03635 3137f9a01f7d51e082763872724058a3 413 PANTHER PTHR32332:SF18 20 67 3.5E-87 T 26-04-2016 RGE_RS02975 c89cab3398bdd9bb34dc5d3fabceef2a 67 Gene3D G3DSA:2.10.70.10 27 67 3.0E-17 T 26-04-2016 RGE_RS02975 c89cab3398bdd9bb34dc5d3fabceef2a 67 Pfam PF10636 Hemin uptake protein hemP 32 67 8.0E-17 T 26-04-2016 IPR019600 Hemin uptake protein HemP RGE_RS12920 87dcbebb92685d3bdaf8cade109fd383 173 PANTHER PTHR36109 1 169 1.6E-19 T 26-04-2016 RGE_RS12920 87dcbebb92685d3bdaf8cade109fd383 173 PANTHER PTHR36109:SF2 1 169 1.6E-19 T 26-04-2016 RGE_RS06700 4110073c57bdf6ea129bb12242953597 311 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 45 58 - T 26-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RGE_RS06700 4110073c57bdf6ea129bb12242953597 311 PANTHER PTHR10314:SF17 7 311 1.3E-63 T 26-04-2016 RGE_RS06700 4110073c57bdf6ea129bb12242953597 311 PANTHER PTHR10314 7 311 1.3E-63 T 26-04-2016 RGE_RS06700 4110073c57bdf6ea129bb12242953597 311 Gene3D G3DSA:3.40.50.1100 73 309 1.4E-53 T 26-04-2016 RGE_RS06700 4110073c57bdf6ea129bb12242953597 311 SUPERFAMILY SSF53686 6 307 3.01E-71 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS06700 4110073c57bdf6ea129bb12242953597 311 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 302 3.7E-63 T 26-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RGE_RS03305 10cf7238cf369a79fa0279cf8cdfd620 77 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 1 63 5.1E-25 T 26-04-2016 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system RGE_RS17395 6662c989b14dcf31477c084662014a27 67 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 57 8.0E-17 T 26-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS17395 6662c989b14dcf31477c084662014a27 67 SMART SM01409 8 59 1.5E-12 T 26-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS17395 6662c989b14dcf31477c084662014a27 67 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 60 15.492 T 26-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS17395 6662c989b14dcf31477c084662014a27 67 Pfam PF01192 RNA polymerase Rpb6 8 57 1.5E-12 T 26-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS17395 6662c989b14dcf31477c084662014a27 67 Gene3D G3DSA:3.90.940.10 1 61 3.9E-10 T 26-04-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS17395 6662c989b14dcf31477c084662014a27 67 PANTHER PTHR34476 2 63 3.6E-14 T 26-04-2016 RGE_RS17395 6662c989b14dcf31477c084662014a27 67 SUPERFAMILY SSF63562 1 63 2.44E-18 T 26-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RGE_RS03500 c0e565e526a28f96120c023fc7e7b7c8 193 Pfam PF13470 PIN domain 10 117 9.4E-10 T 26-04-2016 IPR002716 PIN domain RGE_RS19470 3fd055120822ca179d6e876845a312a0 397 SUPERFAMILY SSF46626 300 395 5.65E-6 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS19470 3fd055120822ca179d6e876845a312a0 397 Pfam PF06181 Protein of unknown function (DUF989) 4 306 1.2E-131 T 26-04-2016 IPR010389 Domain of unknown function DUF989 RGE_RS19470 3fd055120822ca179d6e876845a312a0 397 Gene3D G3DSA:1.10.760.10 323 393 6.2E-5 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03255 7c7a63edd5f3326ec13ca721e4250eea 103 Pfam PF00034 Cytochrome c 26 102 8.1E-6 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03255 7c7a63edd5f3326ec13ca721e4250eea 103 Gene3D G3DSA:1.10.760.10 23 102 4.3E-24 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03255 7c7a63edd5f3326ec13ca721e4250eea 103 SUPERFAMILY SSF46626 1 102 7.39E-13 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03255 7c7a63edd5f3326ec13ca721e4250eea 103 PRINTS PR00606 Class ID cytochrome C signature 91 101 5.5E-12 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS03255 7c7a63edd5f3326ec13ca721e4250eea 103 PRINTS PR00606 Class ID cytochrome C signature 40 53 5.5E-12 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS03255 7c7a63edd5f3326ec13ca721e4250eea 103 PRINTS PR00606 Class ID cytochrome C signature 77 87 5.5E-12 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS03255 7c7a63edd5f3326ec13ca721e4250eea 103 PRINTS PR00606 Class ID cytochrome C signature 25 38 5.5E-12 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS14755 6479fe71abccf16966c25058ec6ed3ec 186 Gene3D G3DSA:1.25.40.10 3 72 1.3E-7 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS14755 6479fe71abccf16966c25058ec6ed3ec 186 Pfam PF13428 Tetratricopeptide repeat 34 72 1.0E-5 T 26-04-2016 RGE_RS14755 6479fe71abccf16966c25058ec6ed3ec 186 SUPERFAMILY SSF48452 4 75 1.83E-8 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS12940 f7c0dd3843bbf266a93c255a712429fd 458 SUPERFAMILY SSF51717 114 327 1.96E-26 T 26-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RGE_RS12940 f7c0dd3843bbf266a93c255a712429fd 458 PANTHER PTHR20941 111 328 2.6E-25 T 26-04-2016 RGE_RS12940 f7c0dd3843bbf266a93c255a712429fd 458 PANTHER PTHR20941:SF11 111 328 2.6E-25 T 26-04-2016 RGE_RS12940 f7c0dd3843bbf266a93c255a712429fd 458 Gene3D G3DSA:3.20.20.20 107 195 1.2E-5 T 26-04-2016 IPR000489 Pterin-binding domain GO:0042558 RGE_RS18595 91cf4ab382eea7c3467e7a28e1e757ee 107 Pfam PF10048 Predicted integral membrane protein (DUF2282) 35 81 3.5E-23 T 26-04-2016 IPR018740 Protein of unknown function DUF2282, integral membrane RGE_RS09460 c5241c748fac9a24201860854dbd3f99 530 PANTHER PTHR30445:SF1 2 527 2.1E-107 T 26-04-2016 RGE_RS09460 c5241c748fac9a24201860854dbd3f99 530 Gene3D G3DSA:3.30.70.1450 272 344 1.3E-9 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS09460 c5241c748fac9a24201860854dbd3f99 530 PANTHER PTHR30445 2 527 2.1E-107 T 26-04-2016 RGE_RS09460 c5241c748fac9a24201860854dbd3f99 530 SUPERFAMILY SSF116726 271 344 1.06E-11 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS09460 c5241c748fac9a24201860854dbd3f99 530 Pfam PF02080 TrkA-C domain 277 343 3.4E-12 T 26-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RGE_RS09460 c5241c748fac9a24201860854dbd3f99 530 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 22 160 1.4E-23 T 26-04-2016 IPR006512 YidE/YbjL duplication RGE_RS09460 c5241c748fac9a24201860854dbd3f99 530 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 363 514 6.1E-30 T 26-04-2016 IPR006512 YidE/YbjL duplication RGE_RS09460 c5241c748fac9a24201860854dbd3f99 530 Pfam PF06826 Predicted Permease Membrane Region 358 527 7.9E-29 T 26-04-2016 IPR006512 YidE/YbjL duplication RGE_RS09460 c5241c748fac9a24201860854dbd3f99 530 Pfam PF06826 Predicted Permease Membrane Region 16 172 1.8E-29 T 26-04-2016 IPR006512 YidE/YbjL duplication RGE_RS19000 31af963f47fb7972442ea6ff2f113f2b 279 Pfam PF13444 Acetyltransferase (GNAT) domain 55 162 1.2E-29 T 26-04-2016 RGE_RS19000 31af963f47fb7972442ea6ff2f113f2b 279 SUPERFAMILY SSF55729 39 252 3.14E-42 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS19000 31af963f47fb7972442ea6ff2f113f2b 279 PANTHER PTHR37323:SF1 32 279 2.8E-64 T 26-04-2016 RGE_RS19000 31af963f47fb7972442ea6ff2f113f2b 279 PANTHER PTHR37323 32 279 2.8E-64 T 26-04-2016 RGE_RS19000 31af963f47fb7972442ea6ff2f113f2b 279 Gene3D G3DSA:3.40.630.30 41 249 6.6E-33 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS15195 e80e744a43e61bbd4dd94df02de36390 272 SUPERFAMILY SSF53649 89 167 9.03E-28 T 26-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RGE_RS15195 e80e744a43e61bbd4dd94df02de36390 272 SUPERFAMILY SSF53649 205 267 9.03E-28 T 26-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RGE_RS15195 e80e744a43e61bbd4dd94df02de36390 272 SUPERFAMILY SSF53649 4 62 9.03E-28 T 26-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RGE_RS15195 e80e744a43e61bbd4dd94df02de36390 272 Gene3D G3DSA:3.40.720.10 4 266 4.3E-22 T 26-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RGE_RS15195 e80e744a43e61bbd4dd94df02de36390 272 Pfam PF00884 Sulfatase 5 267 1.2E-6 T 26-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RGE_RS14360 2d55424d6c77408f579f7f03a3db4a19 325 PIRSF PIRSF017082 1 325 2.4E-73 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS14360 2d55424d6c77408f579f7f03a3db4a19 325 PANTHER PTHR30349:SF16 1 324 3.2E-71 T 26-04-2016 RGE_RS14360 2d55424d6c77408f579f7f03a3db4a19 325 SUPERFAMILY SSF53850 115 294 1.09E-13 T 26-04-2016 RGE_RS14360 2d55424d6c77408f579f7f03a3db4a19 325 PANTHER PTHR30349 1 324 3.2E-71 T 26-04-2016 RGE_RS14360 2d55424d6c77408f579f7f03a3db4a19 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 321 1.7E-80 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS10940 9a3396fcb0e3aeca67adadbf7c2bcd43 198 Pfam PF04955 HupE / UreJ protein 16 192 1.1E-56 T 26-04-2016 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein RGE_RS10940 9a3396fcb0e3aeca67adadbf7c2bcd43 198 PIRSF PIRSF016919 5 197 2.3E-51 T 26-04-2016 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein RGE_RS15750 937967de03405d683182abeca8a684e7 164 PANTHER PTHR33254 1 163 2.0E-65 T 26-04-2016 RGE_RS15750 937967de03405d683182abeca8a684e7 164 TIGRFAM TIGR01935 NOT-MenG: RraA family 6 159 2.2E-60 T 26-04-2016 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 RGE_RS15750 937967de03405d683182abeca8a684e7 164 Gene3D G3DSA:3.50.30.40 3 162 4.6E-56 T 26-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RGE_RS15750 937967de03405d683182abeca8a684e7 164 SUPERFAMILY SSF89562 3 162 4.45E-50 T 26-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RGE_RS15750 937967de03405d683182abeca8a684e7 164 Pfam PF03737 Demethylmenaquinone methyltransferase 6 159 1.3E-47 T 26-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RGE_RS23240 3fd26dd2adfb53f8a72b3e1410dfeb82 220 Pfam PF11876 Protein of unknown function (DUF3396) 7 145 4.5E-19 T 26-04-2016 IPR021815 Protein of unknown function DUF3396 RGE_RS16890 54febc4d2e8b6d32560698bc8f41aae5 305 SMART SM00460 178 253 2.0E-15 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS16890 54febc4d2e8b6d32560698bc8f41aae5 305 Gene3D G3DSA:3.90.260.10 160 256 1.7E-15 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS16890 54febc4d2e8b6d32560698bc8f41aae5 305 SUPERFAMILY SSF54001 99 295 6.48E-41 T 26-04-2016 RGE_RS16890 54febc4d2e8b6d32560698bc8f41aae5 305 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 4 82 4.7E-25 T 26-04-2016 IPR013589 Bacterial transglutaminase-like, N-terminal RGE_RS16890 54febc4d2e8b6d32560698bc8f41aae5 305 PANTHER PTHR33490:SF6 5 297 2.1E-62 T 26-04-2016 RGE_RS16890 54febc4d2e8b6d32560698bc8f41aae5 305 PANTHER PTHR33490 5 297 2.1E-62 T 26-04-2016 RGE_RS16890 54febc4d2e8b6d32560698bc8f41aae5 305 Pfam PF01841 Transglutaminase-like superfamily 135 251 1.8E-21 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS00415 9d363921a4c146aa647c4d65ec62db54 322 SUPERFAMILY SSF53850 118 282 1.21E-7 T 26-04-2016 RGE_RS00415 9d363921a4c146aa647c4d65ec62db54 322 PANTHER PTHR30349:SF32 1 322 3.5E-64 T 26-04-2016 RGE_RS00415 9d363921a4c146aa647c4d65ec62db54 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 318 7.8E-72 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS00415 9d363921a4c146aa647c4d65ec62db54 322 PANTHER PTHR30349 1 322 3.5E-64 T 26-04-2016 RGE_RS00415 9d363921a4c146aa647c4d65ec62db54 322 Gene3D G3DSA:3.40.190.10 159 227 3.9E-5 T 26-04-2016 RGE_RS00415 9d363921a4c146aa647c4d65ec62db54 322 PIRSF PIRSF017082 1 322 3.8E-62 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS15105 c303369e29d50b370190101b6fc30d67 384 Gene3D G3DSA:3.90.1150.10 252 382 8.2E-28 T 26-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RGE_RS15105 c303369e29d50b370190101b6fc30d67 384 PANTHER PTHR11808 3 384 1.1E-104 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS15105 c303369e29d50b370190101b6fc30d67 384 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 3 379 2.5E-84 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS15105 c303369e29d50b370190101b6fc30d67 384 SUPERFAMILY SSF53383 18 380 3.58E-87 T 26-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RGE_RS15105 c303369e29d50b370190101b6fc30d67 384 Gene3D G3DSA:3.40.640.10 2 249 7.6E-75 T 26-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RGE_RS15105 c303369e29d50b370190101b6fc30d67 384 PIRSF PIRSF001434 1 383 2.9E-105 T 26-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 2.8E-13 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 2.8E-13 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 2.8E-13 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 SUPERFAMILY SSF46894 131 202 2.14E-19 T 26-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 Pfam PF00072 Response regulator receiver domain 10 119 1.6E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 199 5.7E-20 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 PANTHER PTHR26402:SF613 8 201 2.1E-64 T 26-04-2016 RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 SUPERFAMILY SSF52172 7 153 1.99E-33 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 Gene3D G3DSA:1.10.10.10 152 202 1.2E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 Gene3D G3DSA:3.40.50.2300 8 151 8.4E-35 T 26-04-2016 RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 PANTHER PTHR26402 8 201 2.1E-64 T 26-04-2016 RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 SMART SM00448 8 119 1.6E-27 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS11515 1412dd60830acd57252f8af6ad30a1cf 207 SMART SM00421 143 200 4.4E-20 T 26-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RGE_RS08865 6c0ea38f6632a7c11d7e1709fa948b7f 190 PANTHER PTHR20974:SF0 1 183 3.3E-59 T 26-04-2016 RGE_RS08865 6c0ea38f6632a7c11d7e1709fa948b7f 190 SUPERFAMILY SSF53335 4 178 2.35E-13 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS08865 6c0ea38f6632a7c11d7e1709fa948b7f 190 PANTHER PTHR20974 1 183 3.3E-59 T 26-04-2016 IPR010342 Protein of unknown function DUF938 RGE_RS08865 6c0ea38f6632a7c11d7e1709fa948b7f 190 Pfam PF06080 Protein of unknown function (DUF938) 5 181 1.6E-48 T 26-04-2016 IPR010342 Protein of unknown function DUF938 RGE_RS14040 7fdb157f4acf0308f2d46b7ff7d3b664 288 PANTHER PTHR11040:SF33 17 288 2.5E-62 T 26-04-2016 RGE_RS14040 7fdb157f4acf0308f2d46b7ff7d3b664 288 PANTHER PTHR11040 17 288 2.5E-62 T 26-04-2016 RGE_RS14040 7fdb157f4acf0308f2d46b7ff7d3b664 288 Pfam PF02535 ZIP Zinc transporter 141 283 4.8E-17 T 26-04-2016 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 RGE_RS20445 c7344a80fdec91bb858838d7906a97b2 247 PANTHER PTHR11931 1 247 1.0E-156 T 26-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 RGE_RS20445 c7344a80fdec91bb858838d7906a97b2 247 SMART SM00855 3 189 4.3E-29 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS20445 c7344a80fdec91bb858838d7906a97b2 247 Gene3D G3DSA:3.40.50.1240 1 246 2.9E-98 T 26-04-2016 IPR029033 Histidine phosphatase superfamily RGE_RS20445 c7344a80fdec91bb858838d7906a97b2 247 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 2 246 5.0E-116 T 26-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 RGE_RS20445 c7344a80fdec91bb858838d7906a97b2 247 SUPERFAMILY SSF53254 1 245 1.96E-80 T 26-04-2016 IPR029033 Histidine phosphatase superfamily RGE_RS20445 c7344a80fdec91bb858838d7906a97b2 247 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 122 4.4E-30 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS20445 c7344a80fdec91bb858838d7906a97b2 247 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 144 218 5.0E-5 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS20445 c7344a80fdec91bb858838d7906a97b2 247 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 26-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 RGE_RS20445 c7344a80fdec91bb858838d7906a97b2 247 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 1 228 44.732 T 26-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 RGE_RS09455 3fec4bffe8e34657870177be6f28cde2 461 SUPERFAMILY SSF63825 178 355 1.1E-8 T 26-04-2016 RGE_RS09455 3fec4bffe8e34657870177be6f28cde2 461 PANTHER PTHR37957 180 350 2.1E-26 T 26-04-2016 RGE_RS09455 3fec4bffe8e34657870177be6f28cde2 461 Pfam PF13449 Esterase-like activity of phytase 61 425 2.3E-59 T 26-04-2016 IPR027372 Phytase-like domain RGE_RS09455 3fec4bffe8e34657870177be6f28cde2 461 Gene3D G3DSA:2.130.10.10 185 301 7.6E-7 T 26-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RGE_RS06755 9a08b871ce7e5fb6eaa84962b28fdf3f 340 Gene3D G3DSA:3.40.50.2000 183 333 3.9E-30 T 26-04-2016 RGE_RS06755 9a08b871ce7e5fb6eaa84962b28fdf3f 340 PANTHER PTHR30160 6 307 6.3E-17 T 26-04-2016 RGE_RS06755 9a08b871ce7e5fb6eaa84962b28fdf3f 340 SUPERFAMILY SSF53756 10 333 5.83E-59 T 26-04-2016 RGE_RS06755 9a08b871ce7e5fb6eaa84962b28fdf3f 340 Gene3D G3DSA:3.40.50.2000 14 143 1.5E-22 T 26-04-2016 RGE_RS06755 9a08b871ce7e5fb6eaa84962b28fdf3f 340 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 87 308 9.1E-26 T 26-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 RGE_RS09925 aa8780272af9385a166845017709b8f4 170 Pfam PF13924 Lipocalin-like domain 38 168 1.1E-36 T 26-04-2016 IPR024311 Lipocalin-like domain RGE_RS21880 6440b9573873d54b0c473cd393553f92 230 Pfam PF00483 Nucleotidyl transferase 5 127 1.3E-18 T 26-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RGE_RS21880 6440b9573873d54b0c473cd393553f92 230 Gene3D G3DSA:3.90.550.10 1 227 1.6E-42 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS21880 6440b9573873d54b0c473cd393553f92 230 PANTHER PTHR22572 4 126 4.8E-37 T 26-04-2016 RGE_RS21880 6440b9573873d54b0c473cd393553f92 230 SUPERFAMILY SSF53448 4 228 2.7E-46 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS01885 a00802de9cf4f403542c0a8515895545 309 PANTHER PTHR30217:SF8 6 229 1.1E-47 T 26-04-2016 RGE_RS01885 a00802de9cf4f403542c0a8515895545 309 Pfam PF01136 Peptidase family U32 109 302 1.8E-10 T 26-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS01885 a00802de9cf4f403542c0a8515895545 309 PANTHER PTHR30217 6 229 1.1E-47 T 26-04-2016 RGE_RS03975 71148da4fe0661149b6b817d4090a43a 314 PANTHER PTHR30465:SF67 12 314 7.9E-134 T 26-04-2016 RGE_RS03975 71148da4fe0661149b6b817d4090a43a 314 PANTHER PTHR30465 12 314 7.9E-134 T 26-04-2016 RGE_RS03975 71148da4fe0661149b6b817d4090a43a 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 314 2.2E-27 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS03975 71148da4fe0661149b6b817d4090a43a 314 Gene3D G3DSA:1.10.3720.10 97 311 3.4E-28 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS03975 71148da4fe0661149b6b817d4090a43a 314 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 74 1.5E-7 T 26-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RGE_RS03975 71148da4fe0661149b6b817d4090a43a 314 SUPERFAMILY SSF161098 98 294 2.75E-24 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS13295 0c197da47d2b6331a27b07a8b0a2dca6 228 PANTHER PTHR10291 1 219 9.0E-104 T 26-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RGE_RS13295 0c197da47d2b6331a27b07a8b0a2dca6 228 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 162 179 - T 26-04-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 RGE_RS13295 0c197da47d2b6331a27b07a8b0a2dca6 228 Pfam PF01255 Putative undecaprenyl diphosphate synthase 1 216 2.7E-75 T 26-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RGE_RS13295 0c197da47d2b6331a27b07a8b0a2dca6 228 Gene3D G3DSA:3.40.1180.10 1 218 3.3E-82 T 26-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RGE_RS13295 0c197da47d2b6331a27b07a8b0a2dca6 228 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 1 216 9.3E-76 T 26-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RGE_RS13295 0c197da47d2b6331a27b07a8b0a2dca6 228 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 1 217 33.384 T 26-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RGE_RS13295 0c197da47d2b6331a27b07a8b0a2dca6 228 SUPERFAMILY SSF64005 1 212 4.32E-76 T 26-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RGE_RS15780 089df0918260835b27832ea575d69d10 372 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 40 350 5.3E-104 T 26-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 RGE_RS15780 089df0918260835b27832ea575d69d10 372 SUPERFAMILY SSF142754 41 350 2.48E-105 T 26-04-2016 RGE_RS15780 089df0918260835b27832ea575d69d10 372 Pfam PF02445 Quinolinate synthetase A protein 43 349 2.6E-99 T 26-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 RGE_RS15780 089df0918260835b27832ea575d69d10 372 PANTHER PTHR30573 28 371 1.4E-141 T 26-04-2016 RGE_RS07700 604cce90a40a36d70413ec8ffaff8fc8 212 PANTHER PTHR33269:SF1 1 195 2.3E-49 T 26-04-2016 RGE_RS07700 604cce90a40a36d70413ec8ffaff8fc8 212 PANTHER PTHR33269 1 195 2.3E-49 T 26-04-2016 RGE_RS07700 604cce90a40a36d70413ec8ffaff8fc8 212 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 19 164 1.3E-34 T 26-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 RGE_RS00710 7a4c09919fe27d8a1c090b6307992277 364 PANTHER PTHR12655 8 351 5.1E-52 T 26-04-2016 RGE_RS00710 7a4c09919fe27d8a1c090b6307992277 364 SUPERFAMILY SSF54637 205 339 6.98E-30 T 26-04-2016 IPR029069 HotDog domain RGE_RS00710 7a4c09919fe27d8a1c090b6307992277 364 SUPERFAMILY SSF54637 28 169 9.75E-19 T 26-04-2016 IPR029069 HotDog domain RGE_RS00710 7a4c09919fe27d8a1c090b6307992277 364 Gene3D G3DSA:3.10.129.10 208 336 3.1E-32 T 26-04-2016 IPR029069 HotDog domain RGE_RS00710 7a4c09919fe27d8a1c090b6307992277 364 Pfam PF03061 Thioesterase superfamily 219 286 1.6E-10 T 26-04-2016 IPR006683 Thioesterase domain RGE_RS00710 7a4c09919fe27d8a1c090b6307992277 364 Gene3D G3DSA:3.10.129.10 32 164 7.7E-27 T 26-04-2016 IPR029069 HotDog domain RGE_RS05310 67ce4c8eeb66c33e7096091aea7be2e7 386 PANTHER PTHR12526 164 380 4.2E-42 T 26-04-2016 RGE_RS05310 67ce4c8eeb66c33e7096091aea7be2e7 386 PANTHER PTHR12526 1 126 4.2E-42 T 26-04-2016 RGE_RS05310 67ce4c8eeb66c33e7096091aea7be2e7 386 Pfam PF13439 Glycosyltransferase Family 4 27 202 1.8E-11 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS05310 67ce4c8eeb66c33e7096091aea7be2e7 386 SUPERFAMILY SSF53756 4 379 4.87E-58 T 26-04-2016 RGE_RS05310 67ce4c8eeb66c33e7096091aea7be2e7 386 Pfam PF13692 Glycosyl transferases group 1 211 342 7.2E-19 T 26-04-2016 RGE_RS05310 67ce4c8eeb66c33e7096091aea7be2e7 386 Gene3D G3DSA:3.40.50.2000 207 356 2.1E-19 T 26-04-2016 RGE_RS17295 bdb59fef8086b9aed093ca6b1c56d95b 261 Pfam PF01925 Sulfite exporter TauE/SafE 8 259 9.5E-43 T 26-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RGE_RS17295 bdb59fef8086b9aed093ca6b1c56d95b 261 PANTHER PTHR30269 1 260 3.2E-54 T 26-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RGE_RS17295 bdb59fef8086b9aed093ca6b1c56d95b 261 PANTHER PTHR30269:SF2 1 260 3.2E-54 T 26-04-2016 RGE_RS19255 c56d1158527ffa87924d61c1ed99070d 280 PANTHER PTHR30096:SF0 1 271 5.4E-85 T 26-04-2016 RGE_RS19255 c56d1158527ffa87924d61c1ed99070d 280 PIRSF PIRSF006157 1 269 9.1E-75 T 26-04-2016 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type GO:0008270|GO:0016701|GO:0055114 RGE_RS19255 c56d1158527ffa87924d61c1ed99070d 280 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 268 6.4E-41 T 26-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 RGE_RS19255 c56d1158527ffa87924d61c1ed99070d 280 Gene3D G3DSA:3.40.830.10 1 268 1.8E-82 T 26-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 RGE_RS19255 c56d1158527ffa87924d61c1ed99070d 280 SUPERFAMILY SSF53213 4 268 3.53E-80 T 26-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 RGE_RS19255 c56d1158527ffa87924d61c1ed99070d 280 PANTHER PTHR30096 1 271 5.4E-85 T 26-04-2016 RGE_RS04390 6dbe7d00bb2962d6b2961e081b150c4f 331 Gene3D G3DSA:3.40.190.10 112 183 1.1E-5 T 26-04-2016 RGE_RS04390 6dbe7d00bb2962d6b2961e081b150c4f 331 SUPERFAMILY SSF46785 8 92 2.82E-23 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04390 6dbe7d00bb2962d6b2961e081b150c4f 331 SUPERFAMILY SSF53850 112 295 3.62E-22 T 26-04-2016 RGE_RS04390 6dbe7d00bb2962d6b2961e081b150c4f 331 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 7.3E-21 T 26-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RGE_RS04390 6dbe7d00bb2962d6b2961e081b150c4f 331 Pfam PF03466 LysR substrate binding domain 110 285 2.2E-18 T 26-04-2016 IPR005119 LysR, substrate-binding RGE_RS04390 6dbe7d00bb2962d6b2961e081b150c4f 331 Gene3D G3DSA:3.40.190.10 184 262 8.0E-9 T 26-04-2016 RGE_RS04390 6dbe7d00bb2962d6b2961e081b150c4f 331 Gene3D G3DSA:1.10.10.10 8 91 3.9E-26 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS04390 6dbe7d00bb2962d6b2961e081b150c4f 331 PANTHER PTHR30579 2 312 4.4E-77 T 26-04-2016 RGE_RS04390 6dbe7d00bb2962d6b2961e081b150c4f 331 PANTHER PTHR30579:SF5 2 312 4.4E-77 T 26-04-2016 RGE_RS01730 eaec2c015a140964b2d6f35157b6f6c5 121 Gene3D G3DSA:1.10.8.50 1 71 7.3E-29 T 26-04-2016 RGE_RS01730 eaec2c015a140964b2d6f35157b6f6c5 121 SUPERFAMILY SSF46946 2 114 2.59E-46 T 26-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RGE_RS01730 eaec2c015a140964b2d6f35157b6f6c5 121 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 119 27.841 T 26-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01730 eaec2c015a140964b2d6f35157b6f6c5 121 Pfam PF00416 Ribosomal protein S13/S18 3 108 1.2E-30 T 26-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01730 eaec2c015a140964b2d6f35157b6f6c5 121 Gene3D G3DSA:4.10.910.10 72 121 1.5E-26 T 26-04-2016 IPR027437 30s ribosomal protein S13, C-terminal RGE_RS01730 eaec2c015a140964b2d6f35157b6f6c5 121 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 26-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 RGE_RS01730 eaec2c015a140964b2d6f35157b6f6c5 121 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 5.8E-53 T 26-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01730 eaec2c015a140964b2d6f35157b6f6c5 121 PIRSF PIRSF002134 1 121 3.5E-42 T 26-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RGE_RS01730 eaec2c015a140964b2d6f35157b6f6c5 121 PANTHER PTHR10871 1 121 8.5E-65 T 26-04-2016 RGE_RS22830 28e54f09f22fdd89d0eae4a8e1064865 611 Gene3D G3DSA:3.40.190.10 185 359 4.0E-29 T 26-04-2016 RGE_RS22830 28e54f09f22fdd89d0eae4a8e1064865 611 Gene3D G3DSA:3.90.76.10 63 184 3.8E-20 T 26-04-2016 RGE_RS22830 28e54f09f22fdd89d0eae4a8e1064865 611 SUPERFAMILY SSF53850 28 600 1.32E-91 T 26-04-2016 RGE_RS22830 28e54f09f22fdd89d0eae4a8e1064865 611 PANTHER PTHR30290 273 610 4.2E-84 T 26-04-2016 RGE_RS22830 28e54f09f22fdd89d0eae4a8e1064865 611 PANTHER PTHR30290 1 250 4.2E-84 T 26-04-2016 RGE_RS22830 28e54f09f22fdd89d0eae4a8e1064865 611 PIRSF PIRSF002741 1 592 8.5E-60 T 26-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RGE_RS22830 28e54f09f22fdd89d0eae4a8e1064865 611 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 517 8.4E-68 T 26-04-2016 IPR000914 Solute-binding protein family 5 domain RGE_RS22830 28e54f09f22fdd89d0eae4a8e1064865 611 Gene3D G3DSA:3.10.105.10 360 570 2.0E-41 T 26-04-2016 RGE_RS08565 4fff7969e79f0c41013944441583f458 114 Gene3D G3DSA:1.20.120.160 1 109 2.7E-23 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS08565 4fff7969e79f0c41013944441583f458 114 SUPERFAMILY SSF47226 1 107 1.07E-21 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS08565 4fff7969e79f0c41013944441583f458 114 Pfam PF01627 Hpt domain 25 103 3.3E-12 T 26-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RGE_RS12870 929f0a3060e94c7efceb4eab53dd8a79 179 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 152 177 8.5E-5 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS12870 929f0a3060e94c7efceb4eab53dd8a79 179 Pfam PF07589 PEP-CTERM motif 151 176 9.2E-6 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS16885 3e94c6f8561d007a8eb77e5a0b54e48d 478 PIRSF PIRSF005522 1 478 7.1E-230 T 26-04-2016 IPR016450 Uncharacterised conserved protein UCP005522 RGE_RS16885 3e94c6f8561d007a8eb77e5a0b54e48d 478 Pfam PF14403 Circularly permuted ATP-grasp type 2 75 454 3.5E-167 T 26-04-2016 IPR025841 Circularly permuted ATP-grasp type 2 RGE_RS16885 3e94c6f8561d007a8eb77e5a0b54e48d 478 PANTHER PTHR34595 5 478 1.3E-289 T 26-04-2016 RGE_RS16885 3e94c6f8561d007a8eb77e5a0b54e48d 478 PANTHER PTHR34595:SF3 5 478 1.3E-289 T 26-04-2016 RGE_RS16885 3e94c6f8561d007a8eb77e5a0b54e48d 478 SUPERFAMILY SSF56059 324 469 1.44E-66 T 26-04-2016 RGE_RS16885 3e94c6f8561d007a8eb77e5a0b54e48d 478 SUPERFAMILY SSF56059 14 217 1.44E-66 T 26-04-2016 RGE_RS12695 e23e81a48aa7abe8637dc0c37e5c0fb0 308 SUPERFAMILY SSF103025 7 221 6.44E-55 T 26-04-2016 RGE_RS12695 e23e81a48aa7abe8637dc0c37e5c0fb0 308 PANTHER PTHR22602 6 256 3.7E-48 T 26-04-2016 RGE_RS12695 e23e81a48aa7abe8637dc0c37e5c0fb0 308 Pfam PF01571 Aminomethyltransferase folate-binding domain 10 118 1.9E-10 T 26-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RGE_RS12695 e23e81a48aa7abe8637dc0c37e5c0fb0 308 Gene3D G3DSA:3.30.70.1400 13 99 8.3E-30 T 26-04-2016 RGE_RS12695 e23e81a48aa7abe8637dc0c37e5c0fb0 308 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 165 229 1.1E-24 T 26-04-2016 IPR017703 YgfZ/GcvT conserved site RGE_RS12695 e23e81a48aa7abe8637dc0c37e5c0fb0 308 PANTHER PTHR22602:SF0 6 256 3.7E-48 T 26-04-2016 RGE_RS12695 e23e81a48aa7abe8637dc0c37e5c0fb0 308 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 205 261 2.0E-5 T 26-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RGE_RS06350 97cebfb011ad234e00c212dd858f2d44 188 Gene3D G3DSA:3.40.630.30 81 181 1.2E-12 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06350 97cebfb011ad234e00c212dd858f2d44 188 PANTHER PTHR39173 6 186 2.4E-12 T 26-04-2016 RGE_RS06350 97cebfb011ad234e00c212dd858f2d44 188 Pfam PF13302 Acetyltransferase (GNAT) domain 3 160 1.8E-9 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS06350 97cebfb011ad234e00c212dd858f2d44 188 SUPERFAMILY SSF55729 75 171 2.42E-15 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS10100 d4f582c72e01f21c59c4ee2fd96f8c40 596 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 228 592 1.1E-159 T 26-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RGE_RS10100 d4f582c72e01f21c59c4ee2fd96f8c40 596 PANTHER PTHR30607 1 210 4.6E-284 T 26-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RGE_RS10100 d4f582c72e01f21c59c4ee2fd96f8c40 596 PANTHER PTHR30607 240 596 4.6E-284 T 26-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RGE_RS10100 d4f582c72e01f21c59c4ee2fd96f8c40 596 Pfam PF03814 Potassium-transporting ATPase A subunit 10 591 2.6E-234 T 26-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RGE_RS10100 d4f582c72e01f21c59c4ee2fd96f8c40 596 PIRSF PIRSF001294 2 595 7.6E-230 T 26-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RGE_RS10100 d4f582c72e01f21c59c4ee2fd96f8c40 596 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 1 593 35.296 T 26-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RGE_RS23260 51339c0173518f4fc0b228da43f0a047 251 SUPERFAMILY SSF53335 38 239 3.72E-30 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS23260 51339c0173518f4fc0b228da43f0a047 251 Pfam PF13489 Methyltransferase domain 39 215 1.2E-15 T 26-04-2016 RGE_RS23260 51339c0173518f4fc0b228da43f0a047 251 Gene3D G3DSA:3.40.50.150 40 220 1.9E-27 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS23260 51339c0173518f4fc0b228da43f0a047 251 PANTHER PTHR10108 51 218 8.7E-13 T 26-04-2016 RGE_RS21325 fdf45dff60a8368bb7422a9e6dad56e4 179 Gene3D G3DSA:3.60.20.10 7 177 1.9E-82 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS21325 fdf45dff60a8368bb7422a9e6dad56e4 179 SUPERFAMILY SSF56235 3 177 6.31E-56 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS21325 fdf45dff60a8368bb7422a9e6dad56e4 179 PANTHER PTHR32194 1 177 1.7E-115 T 26-04-2016 RGE_RS21325 fdf45dff60a8368bb7422a9e6dad56e4 179 Pfam PF00227 Proteasome subunit 4 176 1.9E-20 T 26-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 RGE_RS21325 fdf45dff60a8368bb7422a9e6dad56e4 179 PIRSF PIRSF039093 1 179 1.3E-84 T 26-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RGE_RS21325 fdf45dff60a8368bb7422a9e6dad56e4 179 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 6 177 39.757 T 26-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RGE_RS21325 fdf45dff60a8368bb7422a9e6dad56e4 179 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 7 176 3.4E-82 T 26-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RGE_RS17705 5e6a9aeb11302e2c06dadec46c871a89 284 Gene3D G3DSA:3.40.50.850 127 278 1.9E-28 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS17705 5e6a9aeb11302e2c06dadec46c871a89 284 Gene3D G3DSA:3.40.50.850 7 95 1.9E-28 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS17705 5e6a9aeb11302e2c06dadec46c871a89 284 PANTHER PTHR22937:SF6 38 189 7.9E-25 T 26-04-2016 RGE_RS17705 5e6a9aeb11302e2c06dadec46c871a89 284 PANTHER PTHR22937 38 189 7.9E-25 T 26-04-2016 RGE_RS17705 5e6a9aeb11302e2c06dadec46c871a89 284 SUPERFAMILY SSF52499 135 276 1.15E-11 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS17705 5e6a9aeb11302e2c06dadec46c871a89 284 SUPERFAMILY SSF52499 7 84 1.15E-11 T 26-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 RGE_RS06095 3189d2e5e1b769c9930ef182a2d47d99 43 Pfam PF08085 Entericidin EcnA/B family 21 41 5.7E-11 T 26-04-2016 IPR012556 Entericidin A/B GO:0009636|GO:0016020 RGE_RS12260 c724af5232f3109c0381e1091e124374 228 Pfam PF02517 CAAX protease self-immunity 127 213 6.9E-15 T 26-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 RGE_RS06640 405b4d38f8659aea334f4591b9d322fd 300 Gene3D G3DSA:1.10.40.50 236 299 1.9E-23 T 26-04-2016 RGE_RS06640 405b4d38f8659aea334f4591b9d322fd 300 SUPERFAMILY SSF52540 76 295 4.38E-42 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06640 405b4d38f8659aea334f4591b9d322fd 300 PANTHER PTHR32120:SF2 9 300 8.1E-92 T 26-04-2016 RGE_RS06640 405b4d38f8659aea334f4591b9d322fd 300 Pfam PF03193 Protein of unknown function, DUF258 61 234 6.1E-42 T 26-04-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 RGE_RS06640 405b4d38f8659aea334f4591b9d322fd 300 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 40 292 2.3E-55 T 26-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 RGE_RS06640 405b4d38f8659aea334f4591b9d322fd 300 PANTHER PTHR32120 9 300 8.1E-92 T 26-04-2016 RGE_RS06640 405b4d38f8659aea334f4591b9d322fd 300 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 7 299 31.178 T 26-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 RGE_RS06640 405b4d38f8659aea334f4591b9d322fd 300 Gene3D G3DSA:3.40.50.300 75 234 1.1E-38 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS06640 405b4d38f8659aea334f4591b9d322fd 300 Gene3D G3DSA:2.40.50.140 9 60 1.0E-9 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS06640 405b4d38f8659aea334f4591b9d322fd 300 SUPERFAMILY SSF50249 8 63 3.83E-6 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS08975 60749afca91aa85350c7a2f6ef8050d8 220 Pfam PF11769 Protein of unknown function (DUF3313) 16 211 1.4E-47 T 26-04-2016 IPR021747 Protein of unknown function DUF3313 RGE_RS12535 2df20002b79e1a3be663b252eb868d53 190 SUPERFAMILY SSF48452 18 76 1.2E-6 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS12535 2df20002b79e1a3be663b252eb868d53 190 Gene3D G3DSA:1.25.40.10 18 71 7.6E-6 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS02755 83ffd5a767df8de246d513840ccbaaac 290 Gene3D G3DSA:3.90.182.10 158 262 1.7E-7 T 26-04-2016 IPR011658 PA14 domain RGE_RS02580 6ecc428d1092afeab062abe433f5ca67 150 Gene3D G3DSA:3.40.1490.10 15 150 1.0E-28 T 26-04-2016 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 RGE_RS02580 6ecc428d1092afeab062abe433f5ca67 150 Pfam PF09391 Protein of unknown function (DUF2000) 16 150 1.6E-35 T 26-04-2016 IPR018988 Protein of unknown function DUF2000 RGE_RS02580 6ecc428d1092afeab062abe433f5ca67 150 SUPERFAMILY SSF102462 16 150 1.83E-26 T 26-04-2016 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 RGE_RS10575 bf47be0aae540e2ad810c0d0d423c241 927 Pfam PF01841 Transglutaminase-like superfamily 299 361 4.5E-5 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS10575 bf47be0aae540e2ad810c0d0d423c241 927 Pfam PF12969 Domain of Unknown Function with PDB structure (DUF3857) 73 239 7.8E-30 T 26-04-2016 IPR024618 Domain of unknown function DUF3857 RGE_RS10575 bf47be0aae540e2ad810c0d0d423c241 927 SUPERFAMILY SSF54001 299 417 3.14E-10 T 26-04-2016 RGE_RS10575 bf47be0aae540e2ad810c0d0d423c241 927 Gene3D G3DSA:1.25.40.10 873 902 2.7E-12 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS10575 bf47be0aae540e2ad810c0d0d423c241 927 Gene3D G3DSA:1.25.40.10 707 820 2.7E-12 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS10575 bf47be0aae540e2ad810c0d0d423c241 927 SUPERFAMILY SSF48452 702 923 6.88E-16 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS00380 a95ac45cf117c86b95bad6b32d6fff3f 206 SUPERFAMILY SSF51206 72 188 6.94E-23 T 26-04-2016 IPR018490 Cyclic nucleotide-binding-like RGE_RS00380 a95ac45cf117c86b95bad6b32d6fff3f 206 PANTHER PTHR24567:SF30 72 203 1.1E-14 T 26-04-2016 RGE_RS00380 a95ac45cf117c86b95bad6b32d6fff3f 206 SMART SM00100 68 185 3.3E-11 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS00380 a95ac45cf117c86b95bad6b32d6fff3f 206 PANTHER PTHR24567 72 203 1.1E-14 T 26-04-2016 RGE_RS00380 a95ac45cf117c86b95bad6b32d6fff3f 206 Pfam PF00027 Cyclic nucleotide-binding domain 87 172 3.1E-15 T 26-04-2016 IPR000595 Cyclic nucleotide-binding domain RGE_RS00380 a95ac45cf117c86b95bad6b32d6fff3f 206 Gene3D G3DSA:2.60.120.10 72 192 5.7E-21 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS08850 7effaf44d3322a975fe04f0827418ff8 393 PANTHER PTHR35369:SF2 1 393 1.9E-34 T 26-04-2016 RGE_RS08850 7effaf44d3322a975fe04f0827418ff8 393 SUPERFAMILY SSF56672 2 118 1.47E-7 T 26-04-2016 RGE_RS08850 7effaf44d3322a975fe04f0827418ff8 393 PANTHER PTHR35369 1 393 1.9E-34 T 26-04-2016 RGE_RS12690 bd34bbe742dba7b8577ee1b8a6d855e4 320 Pfam PF02618 YceG-like family 28 313 4.6E-78 T 26-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like RGE_RS12690 bd34bbe742dba7b8577ee1b8a6d855e4 320 Gene3D G3DSA:3.30.160.60 287 320 5.4E-16 T 26-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 RGE_RS12690 bd34bbe742dba7b8577ee1b8a6d855e4 320 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 25 315 1.9E-77 T 26-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like RGE_RS12690 bd34bbe742dba7b8577ee1b8a6d855e4 320 PANTHER PTHR30518:SF2 1 320 4.9E-85 T 26-04-2016 RGE_RS12690 bd34bbe742dba7b8577ee1b8a6d855e4 320 PANTHER PTHR30518 1 320 4.9E-85 T 26-04-2016 RGE_RS03295 851f711f48a937bcd7ae5b0ab7d104a7 101 Pfam PF00034 Cytochrome c 25 99 2.5E-4 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03295 851f711f48a937bcd7ae5b0ab7d104a7 101 PRINTS PR00606 Class ID cytochrome C signature 39 52 9.7E-15 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS03295 851f711f48a937bcd7ae5b0ab7d104a7 101 PRINTS PR00606 Class ID cytochrome C signature 79 89 9.7E-15 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS03295 851f711f48a937bcd7ae5b0ab7d104a7 101 PRINTS PR00606 Class ID cytochrome C signature 90 100 9.7E-15 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS03295 851f711f48a937bcd7ae5b0ab7d104a7 101 PRINTS PR00606 Class ID cytochrome C signature 24 37 9.7E-15 T 26-04-2016 IPR002324 Cytochrome c, class ID GO:0005506|GO:0009055|GO:0020037 RGE_RS03295 851f711f48a937bcd7ae5b0ab7d104a7 101 Gene3D G3DSA:1.10.760.10 21 100 6.1E-28 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03295 851f711f48a937bcd7ae5b0ab7d104a7 101 SUPERFAMILY SSF46626 5 100 6.11E-15 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS04860 e140cd27206db63fd9e328841a22a2b1 475 Pfam PF02667 Short chain fatty acid transporter 21 466 3.0E-95 T 26-04-2016 IPR006160 Short chain fatty acid transporter AtoE RGE_RS04860 e140cd27206db63fd9e328841a22a2b1 475 PANTHER PTHR41983 22 471 1.4E-214 T 26-04-2016 RGE_RS04860 e140cd27206db63fd9e328841a22a2b1 475 PANTHER PTHR41983:SF1 22 471 1.4E-214 T 26-04-2016 RGE_RS22480 e288c8f436e503834d5c1cb16584801e 500 ProSitePatterns PS00571 Amidases signature. 148 179 - T 26-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22480 e288c8f436e503834d5c1cb16584801e 500 SUPERFAMILY SSF75304 429 484 7.98E-123 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22480 e288c8f436e503834d5c1cb16584801e 500 SUPERFAMILY SSF75304 3 396 7.98E-123 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22480 e288c8f436e503834d5c1cb16584801e 500 PANTHER PTHR11895:SF35 1 391 5.4E-133 T 26-04-2016 RGE_RS22480 e288c8f436e503834d5c1cb16584801e 500 PANTHER PTHR11895:SF35 426 493 5.4E-133 T 26-04-2016 RGE_RS22480 e288c8f436e503834d5c1cb16584801e 500 Pfam PF01425 Amidase 28 476 3.5E-88 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22480 e288c8f436e503834d5c1cb16584801e 500 PANTHER PTHR11895 1 391 5.4E-133 T 26-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22480 e288c8f436e503834d5c1cb16584801e 500 PANTHER PTHR11895 426 493 5.4E-133 T 26-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22480 e288c8f436e503834d5c1cb16584801e 500 Gene3D G3DSA:3.90.1300.10 429 489 3.7E-122 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS22480 e288c8f436e503834d5c1cb16584801e 500 Gene3D G3DSA:3.90.1300.10 2 391 3.7E-122 T 26-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RGE_RS16925 71b713762a41c8649ba7e5aebcd3e242 231 Pfam PF07589 PEP-CTERM motif 206 229 1.4E-7 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS16925 71b713762a41c8649ba7e5aebcd3e242 231 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 206 230 4.0E-4 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS09160 f3ec0543226c86396c48249718d27651 209 Gene3D G3DSA:3.40.50.10230 5 205 6.3E-76 T 26-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 RGE_RS09160 f3ec0543226c86396c48249718d27651 209 SUPERFAMILY SSF63965 4 206 2.75E-69 T 26-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 RGE_RS09160 f3ec0543226c86396c48249718d27651 209 Pfam PF02570 Precorrin-8X methylmutase 12 206 8.3E-70 T 26-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 RGE_RS09160 f3ec0543226c86396c48249718d27651 209 PANTHER PTHR32439 1 204 3.5E-71 T 26-04-2016 RGE_RS18855 15e8f780fba67e032a6173c3c65307ea 343 Gene3D G3DSA:3.30.1330.40 218 337 1.3E-11 T 26-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RGE_RS18855 15e8f780fba67e032a6173c3c65307ea 343 SUPERFAMILY SSF55298 231 336 7.57E-12 T 26-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RGE_RS03260 2aee3632135f991a6c51fdb98e803aad 115 Gene3D G3DSA:1.10.760.10 18 104 1.2E-16 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03260 2aee3632135f991a6c51fdb98e803aad 115 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 34 102 6.1E-10 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03260 2aee3632135f991a6c51fdb98e803aad 115 SUPERFAMILY SSF46626 8 103 1.6E-17 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS02455 f1c8c837c6c45c19372e6a2e4ee1263a 206 PANTHER PTHR36920:SF1 1 206 7.7E-51 T 26-04-2016 RGE_RS02455 f1c8c837c6c45c19372e6a2e4ee1263a 206 Gene3D G3DSA:2.40.160.20 28 206 3.8E-53 T 26-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RGE_RS02455 f1c8c837c6c45c19372e6a2e4ee1263a 206 SUPERFAMILY SSF56925 28 206 3.14E-25 T 26-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RGE_RS02455 f1c8c837c6c45c19372e6a2e4ee1263a 206 PANTHER PTHR36920 1 206 7.7E-51 T 26-04-2016 RGE_RS02455 f1c8c837c6c45c19372e6a2e4ee1263a 206 Pfam PF03922 OmpW family 28 206 2.6E-40 T 26-04-2016 IPR005618 Outer membrane protein, OmpW GO:0019867 RGE_RS04535 d1d3affd8f0a44a719d17fbf647b2867 143 SUPERFAMILY SSF46626 38 141 9.97E-30 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS04535 d1d3affd8f0a44a719d17fbf647b2867 143 Pfam PF09086 Domain of unknown function (DUF1924) 50 139 1.9E-38 T 26-04-2016 IPR015170 Protein of unknown function DUF1924 RGE_RS04535 d1d3affd8f0a44a719d17fbf647b2867 143 Gene3D G3DSA:1.10.760.10 37 142 1.3E-45 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS23065 7c9520aaa584ad231aa484878cf56517 297 Gene3D G3DSA:1.25.40.10 156 250 5.3E-11 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS23065 7c9520aaa584ad231aa484878cf56517 297 SUPERFAMILY SSF48452 159 285 6.7E-13 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS23065 7c9520aaa584ad231aa484878cf56517 297 SMART SM00028 188 221 0.071 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS23065 7c9520aaa584ad231aa484878cf56517 297 SMART SM00028 228 260 170.0 T 26-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RGE_RS23065 7c9520aaa584ad231aa484878cf56517 297 Pfam PF13424 Tetratricopeptide repeat 188 250 1.7E-9 T 26-04-2016 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 137 435 1.4E-54 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 SUPERFAMILY SSF63433 15 131 1.19E-31 T 26-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 PANTHER PTHR11820 10 104 3.8E-167 T 26-04-2016 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 PANTHER PTHR11820 131 285 3.8E-167 T 26-04-2016 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 PANTHER PTHR11820 306 439 3.8E-167 T 26-04-2016 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 Gene3D G3DSA:3.90.850.10 134 432 4.8E-102 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 PANTHER PTHR11820:SF1 10 104 3.8E-167 T 26-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 PANTHER PTHR11820:SF1 131 285 3.8E-167 T 26-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 PANTHER PTHR11820:SF1 306 439 3.8E-167 T 26-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 15 438 1.2E-164 T 26-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 Pfam PF09298 Fumarylacetoacetase N-terminal 30 131 7.8E-23 T 26-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 SUPERFAMILY SSF56529 133 438 8.24E-93 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS13010 766cfe0997600410266d3067c2d1be60 440 Gene3D G3DSA:2.30.30.230 15 133 1.6E-33 T 26-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RGE_RS11455 31bdb94d086dda6f8a77d5baa240a7a5 185 TIGRFAM TIGR01841 phasin: phasin family protein 26 103 2.2E-24 T 26-04-2016 IPR010127 Phasin, subfamily 1 RGE_RS11455 31bdb94d086dda6f8a77d5baa240a7a5 185 Pfam PF09361 Phasin protein 6 103 5.8E-31 T 26-04-2016 IPR018968 Phasin RGE_RS17450 bbfe7f570180445730021267b7c62579 242 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 33 56 2.2E-52 T 26-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RGE_RS17450 bbfe7f570180445730021267b7c62579 242 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 71 95 2.2E-52 T 26-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RGE_RS17450 bbfe7f570180445730021267b7c62579 242 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 150 169 2.2E-52 T 26-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RGE_RS17450 bbfe7f570180445730021267b7c62579 242 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 228 241 2.2E-52 T 26-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RGE_RS17450 bbfe7f570180445730021267b7c62579 242 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 197 219 2.2E-52 T 26-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RGE_RS17450 bbfe7f570180445730021267b7c62579 242 ProSitePatterns PS00883 Nickel-dependent hydrogenases b-type cytochrome subunit signature 2. 197 214 - T 26-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RGE_RS17450 bbfe7f570180445730021267b7c62579 242 PANTHER PTHR30485 11 242 2.2E-94 T 26-04-2016 RGE_RS17450 bbfe7f570180445730021267b7c62579 242 Gene3D G3DSA:1.20.950.20 26 237 1.9E-24 T 26-04-2016 RGE_RS17450 bbfe7f570180445730021267b7c62579 242 Pfam PF01292 Prokaryotic cytochrome b561 31 236 6.1E-28 T 26-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RGE_RS17450 bbfe7f570180445730021267b7c62579 242 PANTHER PTHR30485:SF0 11 242 2.2E-94 T 26-04-2016 RGE_RS17450 bbfe7f570180445730021267b7c62579 242 TIGRFAM TIGR02125 CytB-hydogenase: Ni/Fe-hydrogenase, b-type cytochrome subunit 29 241 9.6E-71 T 26-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RGE_RS17450 bbfe7f570180445730021267b7c62579 242 SUPERFAMILY SSF81342 26 241 2.28E-38 T 26-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RGE_RS08240 513ac2e1dd0255d5c72e21a208baf237 200 Pfam PF03748 Flagellar basal body-associated protein FliL 77 200 1.2E-28 T 26-04-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 RGE_RS08240 513ac2e1dd0255d5c72e21a208baf237 200 PANTHER PTHR35091 5 157 6.0E-32 T 26-04-2016 RGE_RS08240 513ac2e1dd0255d5c72e21a208baf237 200 PANTHER PTHR35091:SF1 5 157 6.0E-32 T 26-04-2016 RGE_RS17425 f3cf312bc3c7137955d972da1983e80d 274 PANTHER PTHR31773 2 261 2.6E-43 T 26-04-2016 RGE_RS17425 f3cf312bc3c7137955d972da1983e80d 274 Gene3D G3DSA:3.40.50.1460 2 265 2.6E-61 T 26-04-2016 IPR029030 Caspase-like domain RGE_RS17425 f3cf312bc3c7137955d972da1983e80d 274 SUPERFAMILY SSF52129 4 116 1.73E-5 T 26-04-2016 IPR029030 Caspase-like domain RGE_RS17425 f3cf312bc3c7137955d972da1983e80d 274 Pfam PF00656 Caspase domain 4 265 1.1E-33 T 26-04-2016 RGE_RS13895 864026d59d2a43d2d69fc04292a0664c 198 SUPERFAMILY SSF159594 32 197 8.63E-23 T 26-04-2016 RGE_RS13895 864026d59d2a43d2d69fc04292a0664c 198 Gene3D G3DSA:3.40.50.10610 21 197 3.3E-16 T 26-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component RGE_RS13895 864026d59d2a43d2d69fc04292a0664c 198 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 34 196 6.3E-24 T 26-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component RGE_RS14205 0eec48d2af686089484dda4f8935d1f5 123 Gene3D G3DSA:3.40.50.1400 2 121 3.8E-35 T 26-04-2016 RGE_RS14205 0eec48d2af686089484dda4f8935d1f5 123 Pfam PF01903 CbiX 10 113 6.0E-28 T 26-04-2016 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377|UniPathway: UPA00148 RGE_RS14205 0eec48d2af686089484dda4f8935d1f5 123 SUPERFAMILY SSF53800 2 120 1.44E-32 T 26-04-2016 RGE_RS14205 0eec48d2af686089484dda4f8935d1f5 123 PANTHER PTHR33542 4 113 2.7E-20 T 26-04-2016 RGE_RS21445 ebb7c8816e3baf08d4affc2dadc8696c 299 Gene3D G3DSA:3.40.50.1820 112 298 5.4E-31 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS21445 ebb7c8816e3baf08d4affc2dadc8696c 299 Pfam PF12697 Alpha/beta hydrolase family 113 296 1.7E-9 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS21445 ebb7c8816e3baf08d4affc2dadc8696c 299 SUPERFAMILY SSF53474 106 297 3.0E-29 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS08095 565eb1b5d2d18a3fd7dab3135d494f26 487 SUPERFAMILY SSF56954 6 473 6.15E-110 T 26-04-2016 RGE_RS08095 565eb1b5d2d18a3fd7dab3135d494f26 487 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 14 471 2.0E-124 T 26-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RGE_RS08095 565eb1b5d2d18a3fd7dab3135d494f26 487 Pfam PF02321 Outer membrane efflux protein 67 256 1.4E-24 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS08095 565eb1b5d2d18a3fd7dab3135d494f26 487 Pfam PF02321 Outer membrane efflux protein 289 469 5.9E-31 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS08095 565eb1b5d2d18a3fd7dab3135d494f26 487 PANTHER PTHR30203 1 481 5.8E-168 T 26-04-2016 RGE_RS08095 565eb1b5d2d18a3fd7dab3135d494f26 487 Gene3D G3DSA:1.20.1600.10 144 319 3.7E-99 T 26-04-2016 RGE_RS08095 565eb1b5d2d18a3fd7dab3135d494f26 487 Gene3D G3DSA:1.20.1600.10 358 472 3.7E-99 T 26-04-2016 RGE_RS08095 565eb1b5d2d18a3fd7dab3135d494f26 487 Gene3D G3DSA:1.20.1600.10 55 92 3.7E-99 T 26-04-2016 RGE_RS08095 565eb1b5d2d18a3fd7dab3135d494f26 487 PANTHER PTHR30203:SF15 1 481 5.8E-168 T 26-04-2016 RGE_RS08095 565eb1b5d2d18a3fd7dab3135d494f26 487 Gene3D G3DSA:2.20.200.10 320 356 4.3E-20 T 26-04-2016 RGE_RS08095 565eb1b5d2d18a3fd7dab3135d494f26 487 Gene3D G3DSA:2.20.200.10 102 143 4.3E-20 T 26-04-2016 RGE_RS04460 9d497400a7f08dd6b60c45836125b172 100 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 4 94 5.6E-37 T 26-04-2016 IPR024476 Protein of unknown function DUF3861 RGE_RS05450 a19d19396d23e843759ac9d778ee950c 181 PRINTS PR01021 OMPA domain signature 80 102 6.5E-14 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS05450 a19d19396d23e843759ac9d778ee950c 181 PRINTS PR01021 OMPA domain signature 110 125 6.5E-14 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS05450 a19d19396d23e843759ac9d778ee950c 181 PRINTS PR01021 OMPA domain signature 125 141 6.5E-14 T 26-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RGE_RS05450 a19d19396d23e843759ac9d778ee950c 181 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 77 178 1.7E-38 T 26-04-2016 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 RGE_RS05450 a19d19396d23e843759ac9d778ee950c 181 PANTHER PTHR30128 37 179 1.9E-41 T 26-04-2016 RGE_RS05450 a19d19396d23e843759ac9d778ee950c 181 SUPERFAMILY SSF103088 74 178 4.45E-30 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS05450 a19d19396d23e843759ac9d778ee950c 181 PANTHER PTHR30128:SF18 37 179 1.9E-41 T 26-04-2016 RGE_RS05450 a19d19396d23e843759ac9d778ee950c 181 Gene3D G3DSA:3.30.1330.60 76 179 1.7E-29 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS05450 a19d19396d23e843759ac9d778ee950c 181 Pfam PF00691 OmpA family 79 174 2.9E-17 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS14365 93a197799f6c8d6b034b69aaaa4b38aa 194 Pfam PF02417 Chromate transporter 16 182 3.6E-29 T 26-04-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 RGE_RS14365 93a197799f6c8d6b034b69aaaa4b38aa 194 PANTHER PTHR33567 16 193 4.1E-25 T 26-04-2016 RGE_RS19625 1e028d723f81b68379fa85d250d6639c 401 PANTHER PTHR31862 1 401 8.5E-197 T 26-04-2016 RGE_RS19625 1e028d723f81b68379fa85d250d6639c 401 PIRSF PIRSF033271 5 401 6.2E-176 T 26-04-2016 IPR008322 Uncharacterised protein family UPF0261 RGE_RS19625 1e028d723f81b68379fa85d250d6639c 401 Pfam PF06792 Uncharacterised protein family (UPF0261) 10 399 4.1E-159 T 26-04-2016 IPR008322 Uncharacterised protein family UPF0261 RGE_RS14560 f3579486c071e2546f8cd344b0d8faa3 61 SUPERFAMILY SSF103088 1 45 1.44E-8 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS14560 f3579486c071e2546f8cd344b0d8faa3 61 Gene3D G3DSA:3.30.1330.60 1 45 2.5E-8 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS07155 bace869cebdde7d2f59181d490c1cb90 309 PANTHER PTHR11088 6 305 5.5E-101 T 26-04-2016 RGE_RS07155 bace869cebdde7d2f59181d490c1cb90 309 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 5 305 29.408 T 26-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RGE_RS07155 bace869cebdde7d2f59181d490c1cb90 309 Gene3D G3DSA:3.40.50.300 4 171 1.2E-53 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS07155 bace869cebdde7d2f59181d490c1cb90 309 Pfam PF01715 IPP transferase 39 285 3.3E-84 T 26-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RGE_RS07155 bace869cebdde7d2f59181d490c1cb90 309 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 6 285 2.8E-87 T 26-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RGE_RS07155 bace869cebdde7d2f59181d490c1cb90 309 Gene3D G3DSA:1.10.287.890 202 283 4.7E-31 T 26-04-2016 RGE_RS07155 bace869cebdde7d2f59181d490c1cb90 309 SUPERFAMILY SSF52540 8 150 3.06E-18 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS12910 03ffc8119481cedcda46936d56675201 145 Gene3D G3DSA:3.10.580.10 2 119 5.8E-36 T 26-04-2016 RGE_RS12910 03ffc8119481cedcda46936d56675201 145 Pfam PF00571 CBS domain 5 53 2.4E-11 T 26-04-2016 IPR000644 CBS domain RGE_RS12910 03ffc8119481cedcda46936d56675201 145 Pfam PF00571 CBS domain 69 123 1.5E-11 T 26-04-2016 IPR000644 CBS domain RGE_RS12910 03ffc8119481cedcda46936d56675201 145 PANTHER PTHR11911 3 120 7.8E-29 T 26-04-2016 RGE_RS12910 03ffc8119481cedcda46936d56675201 145 SUPERFAMILY SSF54631 3 123 5.31E-32 T 26-04-2016 RGE_RS12910 03ffc8119481cedcda46936d56675201 145 SMART SM00116 11 58 1.2E-7 T 26-04-2016 IPR000644 CBS domain RGE_RS12910 03ffc8119481cedcda46936d56675201 145 SMART SM00116 76 124 1.5E-9 T 26-04-2016 IPR000644 CBS domain RGE_RS20650 1ab1294a4ec02f22bb55a1f4c1c777f8 272 PANTHER PTHR38034 10 268 7.7E-32 T 26-04-2016 RGE_RS20650 1ab1294a4ec02f22bb55a1f4c1c777f8 272 Pfam PF01578 Cytochrome C assembly protein 79 266 2.5E-22 T 26-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RGE_RS15655 4f53d9cbb85b9a87b70c002a61d5f725 283 Gene3D G3DSA:3.30.1380.10 154 217 7.9E-4 T 26-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RGE_RS15655 4f53d9cbb85b9a87b70c002a61d5f725 283 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 201 263 1.3E-11 T 26-04-2016 RGE_RS15655 4f53d9cbb85b9a87b70c002a61d5f725 283 SUPERFAMILY SSF55166 143 266 1.07E-22 T 26-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RGE_RS16475 60cb68340147f5f1248d80724f0dbada 164 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 9 133 1.5E-24 T 26-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain RGE_RS16475 60cb68340147f5f1248d80724f0dbada 164 Gene3D G3DSA:3.30.530.20 2 140 8.4E-33 T 26-04-2016 IPR023393 START-like domain RGE_RS16475 60cb68340147f5f1248d80724f0dbada 164 SUPERFAMILY SSF55961 2 137 2.5E-24 T 26-04-2016 RGE_RS16475 60cb68340147f5f1248d80724f0dbada 164 PANTHER PTHR12901 2 160 7.1E-35 T 26-04-2016 RGE_RS16475 60cb68340147f5f1248d80724f0dbada 164 PANTHER PTHR12901:SF7 2 160 7.1E-35 T 26-04-2016 RGE_RS07845 6a99b9f4d260a1273cfa15f0dc146bab 124 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 44 73 - T 26-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RGE_RS07845 6a99b9f4d260a1273cfa15f0dc146bab 124 Gene3D G3DSA:2.40.50.100 4 122 6.0E-49 T 26-04-2016 RGE_RS07845 6a99b9f4d260a1273cfa15f0dc146bab 124 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 5 122 1.4E-44 T 26-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 RGE_RS07845 6a99b9f4d260a1273cfa15f0dc146bab 124 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 1 122 26.939 T 26-04-2016 IPR002930 Glycine cleavage system H-protein RGE_RS07845 6a99b9f4d260a1273cfa15f0dc146bab 124 PANTHER PTHR11715 5 122 8.9E-61 T 26-04-2016 IPR002930 Glycine cleavage system H-protein RGE_RS07845 6a99b9f4d260a1273cfa15f0dc146bab 124 SUPERFAMILY SSF51230 4 122 4.32E-42 T 26-04-2016 IPR011053 Single hybrid motif RGE_RS07845 6a99b9f4d260a1273cfa15f0dc146bab 124 Pfam PF01597 Glycine cleavage H-protein 5 122 2.7E-41 T 26-04-2016 IPR002930 Glycine cleavage system H-protein RGE_RS20130 b6b5c19a35e32fe18f65bda17ec93d16 365 PANTHER PTHR22926:SF7 1 361 2.6E-83 T 26-04-2016 RGE_RS20130 b6b5c19a35e32fe18f65bda17ec93d16 365 Pfam PF00953 Glycosyl transferase family 4 77 233 3.3E-25 T 26-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS20130 b6b5c19a35e32fe18f65bda17ec93d16 365 PANTHER PTHR22926 1 361 2.6E-83 T 26-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RGE_RS00645 72ad6ec87b0eeb89c9c9c41f711efbb7 104 PANTHER PTHR10160 9 95 2.6E-31 T 26-04-2016 RGE_RS00645 72ad6ec87b0eeb89c9c9c41f711efbb7 104 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 11 94 3.5E-35 T 26-04-2016 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2 RGE_RS00645 72ad6ec87b0eeb89c9c9c41f711efbb7 104 PANTHER PTHR10160:SF19 9 95 2.6E-31 T 26-04-2016 RGE_RS04990 0894cf7926a28f12985407f3ad6fcf14 207 PANTHER PTHR10434 7 207 1.1E-42 T 26-04-2016 RGE_RS04990 0894cf7926a28f12985407f3ad6fcf14 207 Pfam PF01553 Acyltransferase 33 153 1.8E-22 T 26-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RGE_RS04990 0894cf7926a28f12985407f3ad6fcf14 207 SUPERFAMILY SSF69593 17 204 6.8E-35 T 26-04-2016 RGE_RS04990 0894cf7926a28f12985407f3ad6fcf14 207 PANTHER PTHR10434:SF21 7 207 1.1E-42 T 26-04-2016 RGE_RS04990 0894cf7926a28f12985407f3ad6fcf14 207 SMART SM00563 36 156 1.1E-19 T 26-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RGE_RS04990 0894cf7926a28f12985407f3ad6fcf14 207 Gene3D G3DSA:3.40.1130.10 34 198 4.9E-17 T 26-04-2016 RGE_RS21010 5847ce1cdbbcc22cc6451fd30aa422fc 386 Pfam PF00682 HMGL-like 10 267 4.6E-78 T 26-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RGE_RS21010 5847ce1cdbbcc22cc6451fd30aa422fc 386 PANTHER PTHR10277 12 375 3.0E-124 T 26-04-2016 RGE_RS21010 5847ce1cdbbcc22cc6451fd30aa422fc 386 SUPERFAMILY SSF51569 9 284 2.01E-79 T 26-04-2016 RGE_RS21010 5847ce1cdbbcc22cc6451fd30aa422fc 386 PANTHER PTHR10277:SF45 12 375 3.0E-124 T 26-04-2016 RGE_RS21010 5847ce1cdbbcc22cc6451fd30aa422fc 386 TIGRFAM TIGR02660 nifV_homocitr: homocitrate synthase 10 373 2.5E-154 T 26-04-2016 IPR013477 Homocitrate synthase NifV-type GO:0004410|GO:0051188 KEGG: 00300+2.3.3.14|KEGG: 00620+2.3.3.14|MetaCyc: PWY-3081|MetaCyc: PWY-7710 RGE_RS21010 5847ce1cdbbcc22cc6451fd30aa422fc 386 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 196 209 - T 26-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS21010 5847ce1cdbbcc22cc6451fd30aa422fc 386 Gene3D G3DSA:3.20.20.70 9 339 5.3E-104 T 26-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RGE_RS21010 5847ce1cdbbcc22cc6451fd30aa422fc 386 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 17 33 - T 26-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RGE_RS06355 8bc6f4accd1f0735ce5437d07f6c4f0b 125 PANTHER PTHR36113 1 125 4.8E-47 T 26-04-2016 RGE_RS06355 8bc6f4accd1f0735ce5437d07f6c4f0b 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 123 6.6E-9 T 26-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RGE_RS06355 8bc6f4accd1f0735ce5437d07f6c4f0b 125 Gene3D G3DSA:3.10.180.10 1 125 4.7E-34 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS06355 8bc6f4accd1f0735ce5437d07f6c4f0b 125 SUPERFAMILY SSF54593 2 124 1.93E-21 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS06355 8bc6f4accd1f0735ce5437d07f6c4f0b 125 PANTHER PTHR36113:SF2 1 125 4.8E-47 T 26-04-2016 RGE_RS10850 c4c02e23dd97b495710cfe64229cc9e5 493 Pfam PF04966 Carbohydrate-selective porin, OprB family 237 493 3.2E-25 T 26-04-2016 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 RGE_RS10625 408aa1524525000dd5222ace110f40fd 452 Pfam PF09967 VWA-like domain (DUF2201) 329 451 1.9E-41 T 26-04-2016 IPR018698 VWA-like domain RGE_RS10625 408aa1524525000dd5222ace110f40fd 452 PANTHER PTHR38730:SF1 14 216 8.0E-21 T 26-04-2016 RGE_RS10625 408aa1524525000dd5222ace110f40fd 452 PANTHER PTHR38730:SF1 237 435 8.0E-21 T 26-04-2016 RGE_RS10625 408aa1524525000dd5222ace110f40fd 452 PANTHER PTHR38730 14 216 8.0E-21 T 26-04-2016 RGE_RS10625 408aa1524525000dd5222ace110f40fd 452 PANTHER PTHR38730 237 435 8.0E-21 T 26-04-2016 RGE_RS10625 408aa1524525000dd5222ace110f40fd 452 Pfam PF13203 Putative metallopeptidase domain 9 320 1.4E-83 T 26-04-2016 IPR025154 Putative metallopeptidase domain RGE_RS21545 fb01bce7ee3c57113eff3449607e5f49 371 Pfam PF04892 VanZ like family 52 130 2.6E-9 T 26-04-2016 IPR006976 VanZ-like RGE_RS12390 7a6409b57fa9df3d154db6995e5c7aac 466 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 55 430 6.4E-57 T 26-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RGE_RS12390 7a6409b57fa9df3d154db6995e5c7aac 466 Gene3D G3DSA:3.40.50.1980 54 183 7.7E-25 T 26-04-2016 RGE_RS12390 7a6409b57fa9df3d154db6995e5c7aac 466 PANTHER PTHR33712 9 455 4.8E-39 T 26-04-2016 RGE_RS12390 7a6409b57fa9df3d154db6995e5c7aac 466 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 68 75 - T 26-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RGE_RS12390 7a6409b57fa9df3d154db6995e5c7aac 466 Gene3D G3DSA:3.40.50.1980 252 435 9.5E-15 T 26-04-2016 RGE_RS12390 7a6409b57fa9df3d154db6995e5c7aac 466 SUPERFAMILY SSF53807 3 433 1.6E-64 T 26-04-2016 RGE_RS20515 3765979649a93de8f2f6555c07d5ac8a 176 SMART SM00260 25 166 0.0072 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS20515 3765979649a93de8f2f6555c07d5ac8a 176 SUPERFAMILY SSF50341 28 171 2.35E-18 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS20515 3765979649a93de8f2f6555c07d5ac8a 176 Pfam PF01584 CheW-like domain 32 169 8.2E-15 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS22875 1b61c088bc2be16c43283b05a0c251c0 385 PANTHER PTHR30489 2 384 3.4E-110 T 26-04-2016 RGE_RS22875 1b61c088bc2be16c43283b05a0c251c0 385 PANTHER PTHR30489:SF11 2 384 3.4E-110 T 26-04-2016 RGE_RS22875 1b61c088bc2be16c43283b05a0c251c0 385 Pfam PF02687 FtsX-like permease family 262 376 2.4E-19 T 26-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RGE_RS22875 1b61c088bc2be16c43283b05a0c251c0 385 Pfam PF12704 MacB-like periplasmic core domain 18 226 5.2E-11 T 26-04-2016 IPR025857 MacB-like periplasmic core domain RGE_RS18205 ac55fcafbd825a66d5dfa39cc03e63f4 113 PANTHER PTHR34583:SF1 1 112 8.8E-42 T 26-04-2016 RGE_RS18205 ac55fcafbd825a66d5dfa39cc03e63f4 113 PANTHER PTHR34583 1 112 8.8E-42 T 26-04-2016 RGE_RS18205 ac55fcafbd825a66d5dfa39cc03e63f4 113 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 108 1.1E-22 T 26-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RGE_RS03905 3c9b7b92aa558c34b5bf428b9c6c4321 267 Pfam PF01203 Type II secretion system (T2SS), protein N 52 261 2.8E-25 T 26-04-2016 IPR022792 Type II secretion system, protein N RGE_RS11265 a46329e3df11838de095cf510dbff55e 299 SUPERFAMILY SSF56529 64 278 9.29E-68 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS11265 a46329e3df11838de095cf510dbff55e 299 PANTHER PTHR11820:SF6 1 290 5.8E-101 T 26-04-2016 RGE_RS11265 a46329e3df11838de095cf510dbff55e 299 Gene3D G3DSA:3.90.850.10 68 280 2.5E-69 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS11265 a46329e3df11838de095cf510dbff55e 299 PANTHER PTHR11820 1 290 5.8E-101 T 26-04-2016 RGE_RS11265 a46329e3df11838de095cf510dbff55e 299 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 76 277 4.7E-56 T 26-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RGE_RS12235 4fc6e3dcc5cc048c2c9340998f6c57bd 367 PANTHER PTHR21716:SF16 14 350 1.6E-57 T 26-04-2016 RGE_RS12235 4fc6e3dcc5cc048c2c9340998f6c57bd 367 PANTHER PTHR21716 14 350 1.6E-57 T 26-04-2016 IPR002549 Transmembrane protein TqsA-like RGE_RS12235 4fc6e3dcc5cc048c2c9340998f6c57bd 367 Pfam PF01594 Domain of unknown function DUF20 19 330 2.9E-35 T 26-04-2016 IPR002549 Transmembrane protein TqsA-like RGE_RS17215 680898922db70b457baf7abda1e6cf97 313 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 2 288 3.0E-63 T 26-04-2016 IPR021134 Bestrophin/UPF0187 RGE_RS17215 680898922db70b457baf7abda1e6cf97 313 PANTHER PTHR33281 11 294 4.7E-72 T 26-04-2016 RGE_RS05030 b44f36e3deae53830d56e05e8c6ab516 334 PANTHER PTHR11562:SF40 11 331 6.2E-103 T 26-04-2016 RGE_RS05030 b44f36e3deae53830d56e05e8c6ab516 334 Gene3D G3DSA:1.20.1510.10 26 249 4.6E-43 T 26-04-2016 IPR027469 Cation efflux protein transmembrane domain RGE_RS05030 b44f36e3deae53830d56e05e8c6ab516 334 PANTHER PTHR11562 11 331 6.2E-103 T 26-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RGE_RS05030 b44f36e3deae53830d56e05e8c6ab516 334 Pfam PF01545 Cation efflux family 32 250 4.4E-35 T 26-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RGE_RS05030 b44f36e3deae53830d56e05e8c6ab516 334 SUPERFAMILY SSF161111 183 251 6.15E-42 T 26-04-2016 RGE_RS05030 b44f36e3deae53830d56e05e8c6ab516 334 SUPERFAMILY SSF161111 25 155 6.15E-42 T 26-04-2016 RGE_RS05030 b44f36e3deae53830d56e05e8c6ab516 334 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 26 324 6.0E-61 T 26-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RGE_RS14095 ad6c28cfdfa5179932710e1c9e1e0f0b 108 SUPERFAMILY SSF46626 4 104 8.65E-14 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14095 ad6c28cfdfa5179932710e1c9e1e0f0b 108 Gene3D G3DSA:1.10.760.10 31 103 4.7E-17 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS14095 ad6c28cfdfa5179932710e1c9e1e0f0b 108 Pfam PF00034 Cytochrome c 34 81 8.1E-5 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS23070 b7e3f1ded8fd61f1e7802afe69040d13 178 SUPERFAMILY SSF55729 13 168 3.19E-23 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS23070 b7e3f1ded8fd61f1e7802afe69040d13 178 PANTHER PTHR23091 12 167 7.9E-14 T 26-04-2016 RGE_RS23070 b7e3f1ded8fd61f1e7802afe69040d13 178 Pfam PF00583 Acetyltransferase (GNAT) family 107 158 8.9E-10 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS23070 b7e3f1ded8fd61f1e7802afe69040d13 178 Gene3D G3DSA:3.40.630.30 14 170 5.4E-24 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS20615 68b9cabb13c539dff70205d636e8255d 192 PRINTS PR00624 Histone H5 signature 35 49 1.2E-6 T 26-04-2016 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 RGE_RS20615 68b9cabb13c539dff70205d636e8255d 192 PRINTS PR00624 Histone H5 signature 96 115 1.2E-6 T 26-04-2016 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 RGE_RS20615 68b9cabb13c539dff70205d636e8255d 192 PRINTS PR00624 Histone H5 signature 74 91 1.2E-6 T 26-04-2016 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 RGE_RS20865 b0ed85216f53c99c25f028d95a25cc43 279 Pfam PF13289 SIR2-like domain 108 259 3.8E-20 T 26-04-2016 RGE_RS10415 b2efc90a7dfe0480f7fdf02757c8ab7c 144 Gene3D G3DSA:1.10.10.10 8 85 4.1E-19 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS10415 b2efc90a7dfe0480f7fdf02757c8ab7c 144 PANTHER PTHR33202 1 133 6.9E-21 T 26-04-2016 RGE_RS10415 b2efc90a7dfe0480f7fdf02757c8ab7c 144 Pfam PF01475 Ferric uptake regulator family 18 112 2.8E-16 T 26-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RGE_RS10415 b2efc90a7dfe0480f7fdf02757c8ab7c 144 PANTHER PTHR33202:SF7 1 133 6.9E-21 T 26-04-2016 RGE_RS10415 b2efc90a7dfe0480f7fdf02757c8ab7c 144 SUPERFAMILY SSF46785 9 115 5.44E-21 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS12520 9653faea814acadee0e2fc11ba4b8c4c 179 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 15 158 5.5E-21 T 26-04-2016 IPR008514 Type VI secretion system effector, Hcp RGE_RS12520 9653faea814acadee0e2fc11ba4b8c4c 179 Gene3D G3DSA:2.30.110.20 3 174 7.8E-42 T 26-04-2016 IPR008514 Type VI secretion system effector, Hcp RGE_RS12520 9653faea814acadee0e2fc11ba4b8c4c 179 SUPERFAMILY SSF141452 2 173 3.01E-34 T 26-04-2016 IPR008514 Type VI secretion system effector, Hcp RGE_RS12520 9653faea814acadee0e2fc11ba4b8c4c 179 Pfam PF05638 Type VI secretion system effector, Hcp 10 149 6.5E-35 T 26-04-2016 IPR008514 Type VI secretion system effector, Hcp RGE_RS12520 9653faea814acadee0e2fc11ba4b8c4c 179 PANTHER PTHR36152 3 173 3.3E-15 T 26-04-2016 RGE_RS21215 f3dccd4fbb83733354abe5c60009971a 161 PANTHER PTHR13078 21 158 1.0E-12 T 26-04-2016 RGE_RS21215 f3dccd4fbb83733354abe5c60009971a 161 Gene3D G3DSA:3.10.129.10 21 158 4.1E-27 T 26-04-2016 IPR029069 HotDog domain RGE_RS21215 f3dccd4fbb83733354abe5c60009971a 161 Pfam PF01575 MaoC like domain 28 123 3.8E-15 T 26-04-2016 IPR002539 MaoC-like domain RGE_RS21215 f3dccd4fbb83733354abe5c60009971a 161 SUPERFAMILY SSF54637 21 157 8.27E-25 T 26-04-2016 IPR029069 HotDog domain RGE_RS12290 43c5fd29648d94f7a0d1bf1077f2e334 442 Gene3D G3DSA:3.20.20.30 3 311 1.1E-131 T 26-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RGE_RS12290 43c5fd29648d94f7a0d1bf1077f2e334 442 Gene3D G3DSA:3.20.20.30 350 438 1.1E-131 T 26-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RGE_RS12290 43c5fd29648d94f7a0d1bf1077f2e334 442 PIRSF PIRSF000337 3 442 1.8E-155 T 26-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RGE_RS12290 43c5fd29648d94f7a0d1bf1077f2e334 442 PANTHER PTHR30011:SF18 2 439 1.3E-187 T 26-04-2016 RGE_RS12290 43c5fd29648d94f7a0d1bf1077f2e334 442 Pfam PF00296 Luciferase-like monooxygenase 19 383 1.5E-63 T 26-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RGE_RS12290 43c5fd29648d94f7a0d1bf1077f2e334 442 SUPERFAMILY SSF51679 5 438 4.19E-129 T 26-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RGE_RS12290 43c5fd29648d94f7a0d1bf1077f2e334 442 PANTHER PTHR30011 2 439 1.3E-187 T 26-04-2016 RGE_RS12290 43c5fd29648d94f7a0d1bf1077f2e334 442 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 10 432 2.5E-166 T 26-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RGE_RS10400 ebbf163326ebc444f2a95a6d423f54f7 233 SUPERFAMILY SSF53335 14 188 1.06E-27 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS10400 ebbf163326ebc444f2a95a6d423f54f7 233 PANTHER PTHR10108 19 198 2.8E-21 T 26-04-2016 RGE_RS10400 ebbf163326ebc444f2a95a6d423f54f7 233 Pfam PF08241 Methyltransferase domain 27 123 1.1E-16 T 26-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RGE_RS10400 ebbf163326ebc444f2a95a6d423f54f7 233 Gene3D G3DSA:3.40.50.150 13 192 1.4E-26 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS07290 64e732b20048329407960cb9ccc8d933 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 318 2.0E-75 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS07290 64e732b20048329407960cb9ccc8d933 322 SUPERFAMILY SSF53850 113 281 1.3E-8 T 26-04-2016 RGE_RS07290 64e732b20048329407960cb9ccc8d933 322 PIRSF PIRSF017082 1 322 1.1E-81 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS07290 64e732b20048329407960cb9ccc8d933 322 PANTHER PTHR30349 6 294 2.1E-86 T 26-04-2016 RGE_RS07290 64e732b20048329407960cb9ccc8d933 322 PANTHER PTHR30349:SF16 6 294 2.1E-86 T 26-04-2016 RGE_RS07260 370d8a71d4028d9d6be8411c7dd1a075 216 Pfam PF09335 SNARE associated Golgi protein 49 174 1.9E-18 T 26-04-2016 IPR032816 SNARE associated Golgi protein RGE_RS07260 370d8a71d4028d9d6be8411c7dd1a075 216 PANTHER PTHR30353:SF0 1 209 4.0E-71 T 26-04-2016 RGE_RS07260 370d8a71d4028d9d6be8411c7dd1a075 216 PANTHER PTHR30353 1 209 4.0E-71 T 26-04-2016 IPR032818 DedA family RGE_RS08630 a31e378a3183a3051bd185efd1f4fcfd 311 PANTHER PTHR30520 268 311 1.1E-75 T 26-04-2016 RGE_RS08630 a31e378a3183a3051bd185efd1f4fcfd 311 PANTHER PTHR30520 19 251 1.1E-75 T 26-04-2016 RGE_RS08630 a31e378a3183a3051bd185efd1f4fcfd 311 Pfam PF01226 Formate/nitrite transporter 40 298 1.5E-70 T 26-04-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 RGE_RS08630 a31e378a3183a3051bd185efd1f4fcfd 311 Gene3D G3DSA:1.20.1080.10 52 302 2.1E-73 T 26-04-2016 IPR023271 Aquaporin-like RGE_RS08630 a31e378a3183a3051bd185efd1f4fcfd 311 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 191 201 - T 26-04-2016 IPR024002 Formate/nitrite transporter, conserved site RGE_RS02655 a967dc050d2cee455b7d5495b343c075 372 Gene3D G3DSA:3.40.109.10 272 370 1.4E-13 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS02655 a967dc050d2cee455b7d5495b343c075 372 Gene3D G3DSA:3.40.109.10 39 97 1.4E-13 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS02655 a967dc050d2cee455b7d5495b343c075 372 SUPERFAMILY SSF55469 269 369 4.93E-7 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS02655 a967dc050d2cee455b7d5495b343c075 372 SUPERFAMILY SSF55469 145 201 4.93E-7 T 26-04-2016 IPR000415 Nitroreductase-like GO:0016491 RGE_RS02800 cb78ea14a15886b548d4010ccb7023e4 247 SMART SM00248 83 115 4.7 T 26-04-2016 IPR002110 Ankyrin repeat GO:0005515 RGE_RS02800 cb78ea14a15886b548d4010ccb7023e4 247 SMART SM00248 119 148 110.0 T 26-04-2016 IPR002110 Ankyrin repeat GO:0005515 RGE_RS02800 cb78ea14a15886b548d4010ccb7023e4 247 SMART SM00248 186 217 66.0 T 26-04-2016 IPR002110 Ankyrin repeat GO:0005515 RGE_RS02800 cb78ea14a15886b548d4010ccb7023e4 247 SMART SM00248 153 182 1.3 T 26-04-2016 IPR002110 Ankyrin repeat GO:0005515 RGE_RS02800 cb78ea14a15886b548d4010ccb7023e4 247 PANTHER PTHR24123 71 214 7.5E-18 T 26-04-2016 RGE_RS02800 cb78ea14a15886b548d4010ccb7023e4 247 SUPERFAMILY SSF48403 58 215 6.45E-20 T 26-04-2016 IPR020683 Ankyrin repeat-containing domain RGE_RS02800 cb78ea14a15886b548d4010ccb7023e4 247 Pfam PF12796 Ankyrin repeats (3 copies) 101 180 2.4E-6 T 26-04-2016 IPR020683 Ankyrin repeat-containing domain RGE_RS02800 cb78ea14a15886b548d4010ccb7023e4 247 Gene3D G3DSA:1.25.40.20 59 214 6.8E-25 T 26-04-2016 IPR020683 Ankyrin repeat-containing domain RGE_RS07085 c0fdeb653601064d93aebe0515c59abf 506 Pfam PF14903 WG containing repeat 399 429 4.2E-8 T 26-04-2016 IPR032774 WG containing repeat RGE_RS07085 c0fdeb653601064d93aebe0515c59abf 506 Pfam PF14903 WG containing repeat 433 461 3.8E-5 T 26-04-2016 IPR032774 WG containing repeat RGE_RS07085 c0fdeb653601064d93aebe0515c59abf 506 PANTHER PTHR37841 200 470 2.3E-17 T 26-04-2016 RGE_RS17325 499b80a3947570e1f3eaba7476931f48 294 Pfam PF08340 Domain of unknown function (DUF1732) 211 294 5.4E-34 T 26-04-2016 IPR013551 Domain of unknown function DUF1732 RGE_RS17325 499b80a3947570e1f3eaba7476931f48 294 PANTHER PTHR30636 1 294 4.2E-79 T 26-04-2016 RGE_RS17325 499b80a3947570e1f3eaba7476931f48 294 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 294 1.5E-58 T 26-04-2016 IPR005229 Conserved hypothetical protein CHP00255 RGE_RS17325 499b80a3947570e1f3eaba7476931f48 294 Pfam PF03755 YicC-like family, N-terminal region 1 150 1.0E-31 T 26-04-2016 IPR013527 YicC-like, N-terminal RGE_RS05000 535614c3565e10705e7ae127ff76cc9d 77 PANTHER PTHR32071 10 76 1.7E-15 T 26-04-2016 RGE_RS05000 535614c3565e10705e7ae127ff76cc9d 77 PIRSF PIRSF002097 1 77 3.4E-31 T 26-04-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RGE_RS05000 535614c3565e10705e7ae127ff76cc9d 77 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 40 57 2.4E-9 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS05000 535614c3565e10705e7ae127ff76cc9d 77 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 57 77 2.4E-9 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS05000 535614c3565e10705e7ae127ff76cc9d 77 Pfam PF02954 Bacterial regulatory protein, Fis family 34 73 5.4E-15 T 26-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RGE_RS05000 535614c3565e10705e7ae127ff76cc9d 77 Gene3D G3DSA:1.10.10.60 6 76 4.1E-24 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS05000 535614c3565e10705e7ae127ff76cc9d 77 PRINTS PR01591 DNA-binding protein FIS signature 21 36 4.4E-5 T 26-04-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RGE_RS05000 535614c3565e10705e7ae127ff76cc9d 77 PRINTS PR01591 DNA-binding protein FIS signature 5 21 4.4E-5 T 26-04-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RGE_RS05000 535614c3565e10705e7ae127ff76cc9d 77 PRINTS PR01591 DNA-binding protein FIS signature 36 48 4.4E-5 T 26-04-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RGE_RS05000 535614c3565e10705e7ae127ff76cc9d 77 SUPERFAMILY SSF46689 7 76 2.33E-21 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS22825 8aa203c1349836ad96c012785118457a 257 SUPERFAMILY SSF55729 78 213 1.16E-14 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS22825 8aa203c1349836ad96c012785118457a 257 Gene3D G3DSA:3.40.630.30 80 192 9.3E-4 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS10960 2ce29fca72d66c05bc1a565d3d0573d1 144 PANTHER PTHR36929 1 142 2.5E-24 T 26-04-2016 RGE_RS10960 2ce29fca72d66c05bc1a565d3d0573d1 144 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 15 140 3.2E-22 T 26-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 RGE_RS10960 2ce29fca72d66c05bc1a565d3d0573d1 144 PANTHER PTHR36929:SF1 1 142 2.5E-24 T 26-04-2016 RGE_RS10960 2ce29fca72d66c05bc1a565d3d0573d1 144 SUPERFAMILY SSF55961 1 142 3.46E-36 T 26-04-2016 RGE_RS10960 2ce29fca72d66c05bc1a565d3d0573d1 144 Gene3D G3DSA:3.30.530.20 2 141 1.4E-36 T 26-04-2016 IPR023393 START-like domain RGE_RS01345 c75b3f0d3ded61ee512efe50d3c98278 372 PIRSF PIRSF039026 8 367 3.0E-129 T 26-04-2016 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like RGE_RS01345 c75b3f0d3ded61ee512efe50d3c98278 372 PANTHER PTHR33376:SF5 9 352 2.2E-75 T 26-04-2016 RGE_RS01345 c75b3f0d3ded61ee512efe50d3c98278 372 PANTHER PTHR33376 9 352 2.2E-75 T 26-04-2016 RGE_RS01345 c75b3f0d3ded61ee512efe50d3c98278 372 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 43 328 5.2E-39 T 26-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RGE_RS01930 e6fae6370229a3d2e642ab1617a2e8af 271 SUPERFAMILY SSF52540 20 239 7.94E-47 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01930 e6fae6370229a3d2e642ab1617a2e8af 271 Gene3D G3DSA:3.40.50.300 21 240 6.1E-48 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS01930 e6fae6370229a3d2e642ab1617a2e8af 271 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 26-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RGE_RS01930 e6fae6370229a3d2e642ab1617a2e8af 271 PANTHER PTHR24220 21 264 7.2E-63 T 26-04-2016 RGE_RS01930 e6fae6370229a3d2e642ab1617a2e8af 271 SMART SM00382 32 228 1.1E-15 T 26-04-2016 IPR003593 AAA+ ATPase domain RGE_RS01930 e6fae6370229a3d2e642ab1617a2e8af 271 Pfam PF00005 ABC transporter 25 178 4.4E-26 T 26-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RGE_RS01930 e6fae6370229a3d2e642ab1617a2e8af 271 PANTHER PTHR24220:SF408 21 264 7.2E-63 T 26-04-2016 RGE_RS23315 3a81fc1e2a888ab095c7e6957ff16244 463 Pfam PF13795 HupE / UreJ protein 224 374 5.9E-41 T 26-04-2016 IPR032809 Putative HupE/UreJ protein RGE_RS08860 8152973161dd42c3ec039d75c143c0f6 319 Pfam PF02586 SOS response associated peptidase (SRAP) 129 300 3.6E-15 T 26-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS08860 8152973161dd42c3ec039d75c143c0f6 319 SUPERFAMILY SSF143081 129 314 3.14E-33 T 26-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS08860 8152973161dd42c3ec039d75c143c0f6 319 Gene3D G3DSA:3.90.1680.10 131 305 1.8E-20 T 26-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS01415 ed27db44069f4eec75fc944fda28826e 657 PIRSF PIRSF015380 2 657 5.3E-185 T 26-04-2016 IPR011385 Site-specific recombinase Gcr RGE_RS01415 ed27db44069f4eec75fc944fda28826e 657 Pfam PF10136 Site-specific recombinase 23 654 2.6E-227 T 26-04-2016 IPR011385 Site-specific recombinase Gcr RGE_RS04500 7deeb1103583c0b763f930dae3f9ede2 144 PANTHER PTHR36919:SF1 7 144 5.7E-32 T 26-04-2016 RGE_RS04500 7deeb1103583c0b763f930dae3f9ede2 144 PANTHER PTHR36919 7 144 5.7E-32 T 26-04-2016 RGE_RS04500 7deeb1103583c0b763f930dae3f9ede2 144 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 26 142 1.6E-29 T 26-04-2016 IPR019223 Domain of unknown function DUF2147 RGE_RS12035 33d30d8740fd57caf36cbfda282c95b2 191 Gene3D G3DSA:1.20.1260.10 46 177 7.9E-12 T 26-04-2016 IPR012347 Ferritin-related RGE_RS12035 33d30d8740fd57caf36cbfda282c95b2 191 PANTHER PTHR38593:SF1 25 191 2.7E-23 T 26-04-2016 RGE_RS12035 33d30d8740fd57caf36cbfda282c95b2 191 Pfam PF13628 Domain of unknown function (DUF4142) 49 183 4.8E-44 T 26-04-2016 IPR025419 Domain of unknown function DUF4142 RGE_RS12035 33d30d8740fd57caf36cbfda282c95b2 191 PANTHER PTHR38593 25 191 2.7E-23 T 26-04-2016 RGE_RS16870 01e96a46ca07c92019caaac948a432be 662 Pfam PF01841 Transglutaminase-like superfamily 370 477 7.8E-22 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS16870 01e96a46ca07c92019caaac948a432be 662 SUPERFAMILY SSF54001 272 603 5.75E-52 T 26-04-2016 RGE_RS16870 01e96a46ca07c92019caaac948a432be 662 SMART SM00460 408 479 9.5E-20 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS16870 01e96a46ca07c92019caaac948a432be 662 PANTHER PTHR33490:SF4 39 598 5.6E-50 T 26-04-2016 RGE_RS16870 01e96a46ca07c92019caaac948a432be 662 Pfam PF11992 Domain of unknown function (DUF3488) 14 328 4.0E-99 T 26-04-2016 IPR021878 Protein of unknown function DUF3488 RGE_RS16870 01e96a46ca07c92019caaac948a432be 662 Gene3D G3DSA:3.90.260.10 307 598 1.1E-40 T 26-04-2016 IPR002931 Transglutaminase-like RGE_RS16870 01e96a46ca07c92019caaac948a432be 662 PANTHER PTHR33490 39 598 5.6E-50 T 26-04-2016 RGE_RS16195 32a25d10757f31ee4783f087d7a0ece3 146 Pfam PF13664 Domain of unknown function (DUF4149) 10 104 7.7E-10 T 26-04-2016 IPR025423 Domain of unknown function DUF4149 RGE_RS15470 dd7c16ced865d6b45da25ca50e8d65ba 488 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 50 215 7.2E-13 T 26-04-2016 RGE_RS15470 dd7c16ced865d6b45da25ca50e8d65ba 488 PANTHER PTHR33908 1 331 1.0E-62 T 26-04-2016 RGE_RS15470 dd7c16ced865d6b45da25ca50e8d65ba 488 PANTHER PTHR33908:SF3 1 331 1.0E-62 T 26-04-2016 RGE_RS09330 ee5d5c5b5885b888a0855cc27da4fee0 244 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 214 236 7.1E-6 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS02270 0df40237f48501dbe26dea898c7073cd 243 Pfam PF03591 AzlC protein 23 164 1.8E-32 T 26-04-2016 IPR011606 Branched-chain amino acid transport, permease RGE_RS02270 0df40237f48501dbe26dea898c7073cd 243 PANTHER PTHR34979 5 240 1.5E-23 T 26-04-2016 RGE_RS11800 161e5941b7e4e8a030b1a613d298e517 320 PANTHER PTHR32347 11 315 7.8E-60 T 26-04-2016 RGE_RS11800 161e5941b7e4e8a030b1a613d298e517 320 PANTHER PTHR32347:SF15 11 315 7.8E-60 T 26-04-2016 RGE_RS11800 161e5941b7e4e8a030b1a613d298e517 320 Pfam PF13533 Biotin-lipoyl like 37 71 7.6E-7 T 26-04-2016 RGE_RS11800 161e5941b7e4e8a030b1a613d298e517 320 Gene3D G3DSA:2.40.50.100 196 228 8.5E-10 T 26-04-2016 RGE_RS11800 161e5941b7e4e8a030b1a613d298e517 320 Gene3D G3DSA:2.40.50.100 37 69 8.5E-10 T 26-04-2016 RGE_RS11800 161e5941b7e4e8a030b1a613d298e517 320 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 47 67 2.0E-5 T 26-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RGE_RS11800 161e5941b7e4e8a030b1a613d298e517 320 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 305 320 2.0E-5 T 26-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RGE_RS11800 161e5941b7e4e8a030b1a613d298e517 320 Pfam PF13437 HlyD family secretion protein 200 276 7.8E-11 T 26-04-2016 RGE_RS12315 244a3abb907d5b6de23f7def1f3a5324 416 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 27 416 1.8E-28 T 26-04-2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) RGE_RS12315 244a3abb907d5b6de23f7def1f3a5324 416 Gene3D G3DSA:2.40.160.60 24 416 1.3E-74 T 26-04-2016 RGE_RS12315 244a3abb907d5b6de23f7def1f3a5324 416 SUPERFAMILY SSF56935 25 416 1.01E-47 T 26-04-2016 RGE_RS12315 244a3abb907d5b6de23f7def1f3a5324 416 PANTHER PTHR35093 1 416 2.2E-25 T 26-04-2016 RGE_RS01400 d550ec2682ba3471f4fe1abc619a754a 414 Pfam PF00999 Sodium/hydrogen exchanger family 23 388 1.1E-18 T 26-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RGE_RS02080 43201e3c17304e1a88ab419c5bc53a9b 433 TIGRFAM TIGR03097 PEP_O_lig_1: probable O-glycosylation ligase, exosortase A-associated 2 405 1.9E-158 T 26-04-2016 IPR017528 Conserved hypothetical protein CHP03097, O-antigen ligase-related RGE_RS02080 43201e3c17304e1a88ab419c5bc53a9b 433 Pfam PF04932 O-Antigen ligase 201 337 6.0E-16 T 26-04-2016 IPR007016 O-antigen ligase-related RGE_RS20475 d442870d34d03c6fcb8b2667153ba94e 167 SUPERFAMILY SSF53271 13 136 2.62E-28 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS20475 d442870d34d03c6fcb8b2667153ba94e 167 Pfam PF00156 Phosphoribosyl transferase domain 28 134 2.9E-15 T 26-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RGE_RS20475 d442870d34d03c6fcb8b2667153ba94e 167 PANTHER PTHR11608 26 167 1.6E-38 T 26-04-2016 RGE_RS20475 d442870d34d03c6fcb8b2667153ba94e 167 Gene3D G3DSA:3.40.50.2020 14 140 2.3E-29 T 26-04-2016 IPR029057 Phosphoribosyltransferase-like RGE_RS17170 0c873f97d8e8d960b190893bde78c06a 90 Pfam PF11304 Protein of unknown function (DUF3106) 25 73 2.7E-9 T 26-04-2016 IPR021455 Protein of unknown function DUF3106 RGE_RS12575 dc518e7ea5d58094dfeba4242460f685 348 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 1 343 7.1E-97 T 26-04-2016 IPR017740 Type VI secretion system-associated, ImpA RGE_RS12575 dc518e7ea5d58094dfeba4242460f685 348 PANTHER PTHR37951:SF1 1 348 1.1E-35 T 26-04-2016 RGE_RS12575 dc518e7ea5d58094dfeba4242460f685 348 Pfam PF06812 ImpA, N-terminal, type VI secretion system 7 128 2.7E-35 T 26-04-2016 IPR010657 ImpA, N-terminal RGE_RS12575 dc518e7ea5d58094dfeba4242460f685 348 PANTHER PTHR37951 1 348 1.1E-35 T 26-04-2016 RGE_RS15425 1bdb0f47b4c6a186ef3f18ee74d194e2 268 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 265 78.04 T 26-04-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54|UniPathway: UPA00359 RGE_RS15425 1bdb0f47b4c6a186ef3f18ee74d194e2 268 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 29 224 2.1E-6 T 26-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type RGE_RS15425 1bdb0f47b4c6a186ef3f18ee74d194e2 268 PANTHER PTHR34990 12 238 3.0E-52 T 26-04-2016 RGE_RS15425 1bdb0f47b4c6a186ef3f18ee74d194e2 268 SUPERFAMILY SSF56300 26 232 3.23E-21 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS15425 1bdb0f47b4c6a186ef3f18ee74d194e2 268 Gene3D G3DSA:3.60.21.10 29 145 1.6E-12 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS15425 1bdb0f47b4c6a186ef3f18ee74d194e2 268 Gene3D G3DSA:3.60.21.10 203 224 1.6E-12 T 26-04-2016 IPR029052 Metallo-dependent phosphatase-like RGE_RS15425 1bdb0f47b4c6a186ef3f18ee74d194e2 268 PANTHER PTHR34990:SF1 12 238 3.0E-52 T 26-04-2016 RGE_RS02830 250a59dbf99a77ec5da1da7fe4bd98ff 321 Gene3D G3DSA:2.130.10.10 48 262 2.6E-10 T 26-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RGE_RS02830 250a59dbf99a77ec5da1da7fe4bd98ff 321 SUPERFAMILY SSF82171 45 262 1.7E-12 T 26-04-2016 RGE_RS18495 7aaea84e41f72edbb75a11f1de9f71c1 338 PANTHER PTHR42110:SF1 5 337 1.3E-57 T 26-04-2016 RGE_RS18495 7aaea84e41f72edbb75a11f1de9f71c1 338 Pfam PF06089 L-asparaginase II 8 335 1.3E-111 T 26-04-2016 IPR010349 L-asparaginase II RGE_RS18495 7aaea84e41f72edbb75a11f1de9f71c1 338 PANTHER PTHR42110 5 337 1.3E-57 T 26-04-2016 RGE_RS09735 4d6a1df67afecdf03f7cf962988af362 289 PANTHER PTHR35333:SF2 29 280 1.7E-87 T 26-04-2016 RGE_RS09735 4d6a1df67afecdf03f7cf962988af362 289 Pfam PF13354 Beta-lactamase enzyme family 50 254 1.1E-45 T 26-04-2016 RGE_RS09735 4d6a1df67afecdf03f7cf962988af362 289 PRINTS PR00118 Beta-lactamase class A signature 220 235 3.3E-58 T 26-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RGE_RS09735 4d6a1df67afecdf03f7cf962988af362 289 PRINTS PR00118 Beta-lactamase class A signature 105 130 3.3E-58 T 26-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RGE_RS09735 4d6a1df67afecdf03f7cf962988af362 289 PRINTS PR00118 Beta-lactamase class A signature 31 55 3.3E-58 T 26-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RGE_RS09735 4d6a1df67afecdf03f7cf962988af362 289 PRINTS PR00118 Beta-lactamase class A signature 62 79 3.3E-58 T 26-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RGE_RS09735 4d6a1df67afecdf03f7cf962988af362 289 PRINTS PR00118 Beta-lactamase class A signature 203 218 3.3E-58 T 26-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RGE_RS09735 4d6a1df67afecdf03f7cf962988af362 289 PRINTS PR00118 Beta-lactamase class A signature 141 165 3.3E-58 T 26-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RGE_RS09735 4d6a1df67afecdf03f7cf962988af362 289 PRINTS PR00118 Beta-lactamase class A signature 167 192 3.3E-58 T 26-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RGE_RS09735 4d6a1df67afecdf03f7cf962988af362 289 Gene3D G3DSA:3.40.710.10 31 280 1.3E-99 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS09735 4d6a1df67afecdf03f7cf962988af362 289 PANTHER PTHR35333 29 280 1.7E-87 T 26-04-2016 RGE_RS09735 4d6a1df67afecdf03f7cf962988af362 289 SUPERFAMILY SSF56601 32 281 1.93E-74 T 26-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RGE_RS11310 5790562c74e23ad54d7e160def04e5c1 191 Pfam PF06821 Serine hydrolase 22 183 4.9E-56 T 26-04-2016 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RGE_RS11310 5790562c74e23ad54d7e160def04e5c1 191 Gene3D G3DSA:3.40.50.1820 20 186 1.3E-40 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS11310 5790562c74e23ad54d7e160def04e5c1 191 SUPERFAMILY SSF53474 22 182 8.65E-32 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS21550 d23c1c29e5d42e376828c63039b75e3d 142 PIRSF PIRSF004638 1 142 4.9E-50 T 26-04-2016 IPR005265 Uncharacterised protein family UPF0093 RGE_RS21550 d23c1c29e5d42e376828c63039b75e3d 142 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 142 1.8E-45 T 26-04-2016 IPR005265 Uncharacterised protein family UPF0093 RGE_RS21550 d23c1c29e5d42e376828c63039b75e3d 142 PANTHER PTHR40255 1 142 5.0E-41 T 26-04-2016 RGE_RS22560 d2811fcfa5aa99304b0b1322670b07b6 282 Gene3D G3DSA:3.40.50.1820 14 282 7.8E-45 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS22560 d2811fcfa5aa99304b0b1322670b07b6 282 Pfam PF12697 Alpha/beta hydrolase family 35 276 1.2E-18 T 26-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RGE_RS22560 d2811fcfa5aa99304b0b1322670b07b6 282 PANTHER PTHR10992 14 282 2.5E-29 T 26-04-2016 RGE_RS22560 d2811fcfa5aa99304b0b1322670b07b6 282 TIGRFAM TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein 7 275 3.1E-55 T 26-04-2016 IPR017497 Putative magnesium chelatase accessory protein KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00671 RGE_RS22560 d2811fcfa5aa99304b0b1322670b07b6 282 SUPERFAMILY SSF53474 14 282 7.3E-46 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS19375 8de3772ca68d3e3bc8c5d6cc7992a859 519 Pfam PF10088 Uncharacterised protein conserved in bacteria (DUF2326) 399 502 7.0E-16 T 26-04-2016 IPR018760 Protein of unknown function DUF2326 RGE_RS03390 f8345834b2e7fd1438eaae89377479a4 386 TIGRFAM TIGR01869 casC_Cse4: CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI 4 337 3.5E-112 T 26-04-2016 IPR010148 CRISPR-associated protein, CT1975 RGE_RS03390 f8345834b2e7fd1438eaae89377479a4 386 Pfam PF09344 CT1975-like protein 5 363 3.7E-123 T 26-04-2016 IPR010148 CRISPR-associated protein, CT1975 RGE_RS10785 86bf1ad3582eefea10092f2a8f61d1fe 157 PANTHER PTHR30009:SF6 41 134 5.4E-25 T 26-04-2016 RGE_RS10785 86bf1ad3582eefea10092f2a8f61d1fe 157 PANTHER PTHR30009 41 134 5.4E-25 T 26-04-2016 RGE_RS10785 86bf1ad3582eefea10092f2a8f61d1fe 157 Pfam PF03918 Cytochrome C biogenesis protein 15 140 6.8E-48 T 26-04-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family RGE_RS01220 38fdb0e416c85158b9f8d7da5c01da7e 431 Pfam PF08886 Glutamate-cysteine ligase 17 420 1.1E-183 T 26-04-2016 IPR011718 Glutamate--cysteine ligase GshA RGE_RS01220 38fdb0e416c85158b9f8d7da5c01da7e 431 SUPERFAMILY SSF56059 249 356 1.35E-6 T 26-04-2016 RGE_RS01220 38fdb0e416c85158b9f8d7da5c01da7e 431 TIGRFAM TIGR02049 gshA_ferroox: glutamate--cysteine ligase 18 423 1.8E-168 T 26-04-2016 IPR011718 Glutamate--cysteine ligase GshA RGE_RS20150 7a78c42bb09e4e106722a7804669bc88 79 Gene3D G3DSA:1.10.1200.10 4 71 6.3E-6 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS20150 7a78c42bb09e4e106722a7804669bc88 79 SUPERFAMILY SSF47336 7 75 5.37E-8 T 26-04-2016 IPR009081 Phosphopantetheine binding ACP domain RGE_RS20010 3f963ef7313f69e1180bda873d7b1e26 251 TIGRFAM TIGR00613 reco: DNA repair protein RecO 13 156 5.5E-17 T 26-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RGE_RS20010 3f963ef7313f69e1180bda873d7b1e26 251 PANTHER PTHR33991 5 250 1.0E-32 T 26-04-2016 RGE_RS20010 3f963ef7313f69e1180bda873d7b1e26 251 Hamap MF_00201 DNA repair protein RecO [recO]. 5 242 19.682 T 26-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RGE_RS20010 3f963ef7313f69e1180bda873d7b1e26 251 Pfam PF02565 Recombination protein O C terminal 94 237 2.4E-13 T 26-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RGE_RS20010 3f963ef7313f69e1180bda873d7b1e26 251 SUPERFAMILY SSF57863 95 155 2.54E-5 T 26-04-2016 RGE_RS20010 3f963ef7313f69e1180bda873d7b1e26 251 Gene3D G3DSA:2.40.50.140 11 73 1.1E-9 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS20010 3f963ef7313f69e1180bda873d7b1e26 251 SUPERFAMILY SSF50249 9 71 4.63E-11 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS20010 3f963ef7313f69e1180bda873d7b1e26 251 Pfam PF11967 Recombination protein O N terminal 10 83 1.7E-17 T 26-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal RGE_RS03505 bdb234b2f7f44721cc17522efc067334 157 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 87 133 5.5E-14 T 26-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 RGE_RS03505 bdb234b2f7f44721cc17522efc067334 157 Pfam PF12728 Helix-turn-helix domain 87 134 4.1E-9 T 26-04-2016 RGE_RS20345 3ddf95c5dee162c4e17dbcee32bcfe13 214 Gene3D G3DSA:2.60.120.10 48 183 1.2E-19 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS20345 3ddf95c5dee162c4e17dbcee32bcfe13 214 SUPERFAMILY SSF51182 8 193 8.11E-27 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS18015 ddc521d80fd4f88cbf81bd3fadab7efb 63 SUPERFAMILY SSF55008 2 62 1.7E-12 T 26-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RGE_RS18015 ddc521d80fd4f88cbf81bd3fadab7efb 63 Gene3D G3DSA:3.30.70.100 1 62 5.3E-16 T 26-04-2016 RGE_RS18015 ddc521d80fd4f88cbf81bd3fadab7efb 63 Pfam PF00403 Heavy-metal-associated domain 5 61 3.0E-10 T 26-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RGE_RS18015 ddc521d80fd4f88cbf81bd3fadab7efb 63 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 35 - T 26-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RGE_RS20025 0212bfeb4876532022c1a00526d569de 125 Pfam PF16137 Domain of unknown function (DUF4845) 36 118 1.5E-21 T 26-04-2016 IPR032314 Protein of unknown function DUF4845 RGE_RS17490 7f3db739ec1c91c2235ef8145064996a 350 Gene3D G3DSA:1.10.645.10 202 337 1.2E-12 T 26-04-2016 IPR029014 NiFe hydrogenase-like RGE_RS17490 7f3db739ec1c91c2235ef8145064996a 350 SUPERFAMILY SSF56762 29 337 1.31E-21 T 26-04-2016 IPR029014 NiFe hydrogenase-like RGE_RS13875 0d04259f269716b7eb9f943011f210d6 760 PANTHER PTHR21716 24 116 6.3E-46 T 26-04-2016 IPR002549 Transmembrane protein TqsA-like RGE_RS13875 0d04259f269716b7eb9f943011f210d6 760 PANTHER PTHR21716 136 425 6.3E-46 T 26-04-2016 IPR002549 Transmembrane protein TqsA-like RGE_RS13875 0d04259f269716b7eb9f943011f210d6 760 Pfam PF01594 Domain of unknown function DUF20 27 366 9.5E-45 T 26-04-2016 IPR002549 Transmembrane protein TqsA-like RGE_RS13875 0d04259f269716b7eb9f943011f210d6 760 SUPERFAMILY SSF55781 613 735 1.04E-5 T 26-04-2016 IPR029016 GAF domain-like RGE_RS19530 a92034118455a22f976ec51b52c7c197 359 PANTHER PTHR32196 1 350 8.1E-66 T 26-04-2016 RGE_RS19530 a92034118455a22f976ec51b52c7c197 359 Pfam PF02653 Branched-chain amino acid transport system / permease component 60 338 3.4E-36 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS19530 a92034118455a22f976ec51b52c7c197 359 PANTHER PTHR32196:SF22 1 350 8.1E-66 T 26-04-2016 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 Pfam PF01289 Thiol-activated cytolysin 6 457 2.4E-149 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 SUPERFAMILY SSF56978 6 459 3.14E-64 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 PRINTS PR01400 Bacterial thiol-activated pore-forming cytolysin signature 283 300 1.3E-29 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 PRINTS PR01400 Bacterial thiol-activated pore-forming cytolysin signature 72 88 1.3E-29 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 PRINTS PR01400 Bacterial thiol-activated pore-forming cytolysin signature 330 357 1.3E-29 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 PRINTS PR01400 Bacterial thiol-activated pore-forming cytolysin signature 226 249 1.3E-29 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 PRINTS PR01400 Bacterial thiol-activated pore-forming cytolysin signature 88 106 1.3E-29 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 PRINTS PR01400 Bacterial thiol-activated pore-forming cytolysin signature 369 386 1.3E-29 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 PRINTS PR01400 Bacterial thiol-activated pore-forming cytolysin signature 11 28 1.3E-29 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 PRINTS PR01400 Bacterial thiol-activated pore-forming cytolysin signature 148 163 1.3E-29 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 Gene3D G3DSA:3.90.840.10 322 341 7.1E-32 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 Gene3D G3DSA:3.90.840.10 6 19 7.1E-32 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 Gene3D G3DSA:3.90.840.10 59 140 7.1E-32 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 Gene3D G3DSA:3.90.840.10 193 243 7.1E-32 T 26-04-2016 IPR001869 Thiol-activated cytolysin GO:0009405|GO:0015485 RGE_RS19580 46f3f0db3349e6f2887f8206f12b3d87 460 Gene3D G3DSA:2.60.40.1430 363 458 1.2E-11 T 26-04-2016 RGE_RS15840 7d1ce7c316dbc71f4b8175ce5db5660d 164 Pfam PF01613 Flavin reductase like domain 17 160 8.4E-39 T 26-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RGE_RS15840 7d1ce7c316dbc71f4b8175ce5db5660d 164 SUPERFAMILY SSF50475 6 163 3.88E-50 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS15840 7d1ce7c316dbc71f4b8175ce5db5660d 164 PANTHER PTHR30466 5 164 1.6E-40 T 26-04-2016 RGE_RS15840 7d1ce7c316dbc71f4b8175ce5db5660d 164 Gene3D G3DSA:2.30.110.10 6 159 1.4E-56 T 26-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RGE_RS15840 7d1ce7c316dbc71f4b8175ce5db5660d 164 PANTHER PTHR30466:SF1 5 164 1.6E-40 T 26-04-2016 RGE_RS15840 7d1ce7c316dbc71f4b8175ce5db5660d 164 SMART SM00903 16 159 1.0E-57 T 26-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RGE_RS12375 8f3b79e097ff7db9c041980dc67ded77 264 PANTHER PTHR30151 9 260 1.1E-143 T 26-04-2016 RGE_RS12375 8f3b79e097ff7db9c041980dc67ded77 264 SUPERFAMILY SSF161098 59 241 7.46E-34 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12375 8f3b79e097ff7db9c041980dc67ded77 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 250 4.1E-27 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12375 8f3b79e097ff7db9c041980dc67ded77 264 PANTHER PTHR30151:SF22 9 260 1.1E-143 T 26-04-2016 RGE_RS12375 8f3b79e097ff7db9c041980dc67ded77 264 Gene3D G3DSA:1.10.3720.10 58 252 2.3E-25 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS00915 0556cb3ee26531f5cee5159258fcc5a8 155 SUPERFAMILY SSF82784 1 153 2.75E-45 T 26-04-2016 IPR003718 OsmC/Ohr family RGE_RS00915 0556cb3ee26531f5cee5159258fcc5a8 155 Pfam PF02566 OsmC-like protein 53 152 6.4E-16 T 26-04-2016 IPR003718 OsmC/Ohr family RGE_RS00915 0556cb3ee26531f5cee5159258fcc5a8 155 Gene3D G3DSA:3.30.300.20 1 154 8.3E-54 T 26-04-2016 IPR015946 K homology domain-like, alpha/beta RGE_RS07015 c7aef6f3815affa188437822d9a7c5bb 382 Pfam PF05977 Transmembrane secretion effector 1 363 3.0E-31 T 26-04-2016 IPR010290 Transmembrane secretion effector RGE_RS07015 c7aef6f3815affa188437822d9a7c5bb 382 Gene3D G3DSA:1.20.1250.20 12 165 7.5E-12 T 26-04-2016 RGE_RS07015 c7aef6f3815affa188437822d9a7c5bb 382 Gene3D G3DSA:1.20.1250.20 194 365 1.7E-10 T 26-04-2016 RGE_RS07015 c7aef6f3815affa188437822d9a7c5bb 382 SUPERFAMILY SSF103473 3 370 3.53E-33 T 26-04-2016 IPR020846 Major facilitator superfamily domain RGE_RS07015 c7aef6f3815affa188437822d9a7c5bb 382 PANTHER PTHR23513 1 373 1.7E-100 T 26-04-2016 RGE_RS07015 c7aef6f3815affa188437822d9a7c5bb 382 PANTHER PTHR23513:SF9 1 373 1.7E-100 T 26-04-2016 RGE_RS16765 bd96bd72e3dad3d94f7e4ea25fc1769b 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 15 139 1.5E-29 T 26-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RGE_RS16765 bd96bd72e3dad3d94f7e4ea25fc1769b 146 PANTHER PTHR30558 13 146 6.3E-29 T 26-04-2016 RGE_RS16765 bd96bd72e3dad3d94f7e4ea25fc1769b 146 PANTHER PTHR30558:SF3 13 146 6.3E-29 T 26-04-2016 RGE_RS11010 60de3595396a740582f0c56ef626f4f5 367 PANTHER PTHR34219 1 367 1.8E-48 T 26-04-2016 RGE_RS11010 60de3595396a740582f0c56ef626f4f5 367 Pfam PF03929 PepSY-associated TM region 7 364 3.7E-50 T 26-04-2016 IPR005625 PepSY-associated TM protein RGE_RS17975 3f4227bd047060e45e322a2e6c8ad9a8 280 Hamap MF_01805 Segregation and condensation protein A [scpA]. 47 277 21.081 T 26-04-2016 IPR003768 Segregation and condensation protein A RGE_RS17975 3f4227bd047060e45e322a2e6c8ad9a8 280 PANTHER PTHR33969:SF2 31 275 1.2E-75 T 26-04-2016 RGE_RS17975 3f4227bd047060e45e322a2e6c8ad9a8 280 Pfam PF02616 Segregation and condensation protein ScpA 64 275 3.2E-31 T 26-04-2016 IPR003768 Segregation and condensation protein A RGE_RS17975 3f4227bd047060e45e322a2e6c8ad9a8 280 PANTHER PTHR33969 31 275 1.2E-75 T 26-04-2016 RGE_RS16045 f3bb5a7fe25142a08b110d4e07fae592 204 Gene3D G3DSA:3.90.1470.10 13 128 2.2E-42 T 26-04-2016 RGE_RS16045 f3bb5a7fe25142a08b110d4e07fae592 204 TIGRFAM TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein 1 195 1.7E-88 T 26-04-2016 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|UniPathway: UPA00135 RGE_RS16045 f3bb5a7fe25142a08b110d4e07fae592 204 Gene3D G3DSA:3.40.50.1000 129 170 2.8E-7 T 26-04-2016 IPR023214 HAD-like domain RGE_RS16045 f3bb5a7fe25142a08b110d4e07fae592 204 Pfam PF00702 haloacid dehalogenase-like hydrolase 58 164 1.8E-10 T 26-04-2016 RGE_RS16045 f3bb5a7fe25142a08b110d4e07fae592 204 SUPERFAMILY SSF56784 1 192 4.75E-44 T 26-04-2016 IPR023214 HAD-like domain RGE_RS19060 d127549c45e5cf3f3da9a65625bfe914 265 Pfam PF07589 PEP-CTERM motif 239 262 7.0E-7 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS19060 d127549c45e5cf3f3da9a65625bfe914 265 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 240 264 6.5E-5 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS15790 8f3a57d34e0481c46ba1b27a51b3e244 96 Pfam PF10719 Late competence development protein ComFB 9 89 4.2E-20 T 26-04-2016 IPR019657 Late competence development protein ComFB RGE_RS03960 dfef1489b8d55762589c073d5af1c72b 140 PANTHER PTHR34352 1 140 9.2E-40 T 26-04-2016 RGE_RS03960 dfef1489b8d55762589c073d5af1c72b 140 SUPERFAMILY SSF82784 1 139 1.09E-37 T 26-04-2016 IPR003718 OsmC/Ohr family RGE_RS03960 dfef1489b8d55762589c073d5af1c72b 140 Gene3D G3DSA:3.30.300.20 41 138 2.9E-40 T 26-04-2016 IPR015946 K homology domain-like, alpha/beta RGE_RS03960 dfef1489b8d55762589c073d5af1c72b 140 Gene3D G3DSA:2.20.25.10 1 36 2.3E-16 T 26-04-2016 RGE_RS03960 dfef1489b8d55762589c073d5af1c72b 140 Pfam PF02566 OsmC-like protein 36 133 1.2E-16 T 26-04-2016 IPR003718 OsmC/Ohr family RGE_RS03000 de1dd75fbad8665e1a5ebc1f96fa516a 161 Pfam PF01618 MotA/TolQ/ExbB proton channel family 74 149 4.8E-7 T 26-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RGE_RS14070 c5b377968d04a2b4d00e62df4d1a76b9 207 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 22 193 2.8E-34 T 26-04-2016 IPR003740 Uncharacterised membrane protein YitT RGE_RS14070 c5b377968d04a2b4d00e62df4d1a76b9 207 PANTHER PTHR33545 2 204 1.5E-55 T 26-04-2016 RGE_RS11750 36f031b0e602362f1cc604d2fdddf6e2 351 Gene3D G3DSA:3.30.1400.10 265 332 2.1E-6 T 26-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 RGE_RS11750 36f031b0e602362f1cc604d2fdddf6e2 351 SMART SM00771 200 327 4.4E-4 T 26-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 RGE_RS11750 36f031b0e602362f1cc604d2fdddf6e2 351 SUPERFAMILY SSF64383 200 334 2.48E-12 T 26-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 RGE_RS14335 45938f8446af1acab3c1c728ab277605 72 Gene3D G3DSA:1.10.700.10 14 50 9.3E-4 T 26-04-2016 IPR011986 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit RGE_RS20855 c30bac3561b78d1aa3a90c619f870275 70 Pfam PF06988 NifT/FixU protein 1 64 1.2E-30 T 26-04-2016 IPR009727 NifT/FixU GO:0009399 RGE_RS20855 c30bac3561b78d1aa3a90c619f870275 70 TIGRFAM TIGR02934 nifT_nitrog: probable nitrogen fixation protein FixT 1 67 7.0E-33 T 26-04-2016 IPR009727 NifT/FixU GO:0009399 RGE_RS20855 c30bac3561b78d1aa3a90c619f870275 70 SUPERFAMILY SSF159203 1 67 2.48E-25 T 26-04-2016 IPR024044 NifT/FixU barrel-like domain RGE_RS20855 c30bac3561b78d1aa3a90c619f870275 70 Gene3D G3DSA:2.40.50.240 1 67 1.6E-33 T 26-04-2016 IPR024044 NifT/FixU barrel-like domain RGE_RS15255 55679c0a7a1604136b4037c4d498fc28 147 PANTHER PTHR31964 1 145 5.5E-27 T 26-04-2016 RGE_RS15255 55679c0a7a1604136b4037c4d498fc28 147 Gene3D G3DSA:3.40.50.620 1 147 2.0E-36 T 26-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RGE_RS15255 55679c0a7a1604136b4037c4d498fc28 147 PRINTS PR01438 Universal stress protein signature 125 147 5.4E-15 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS15255 55679c0a7a1604136b4037c4d498fc28 147 PRINTS PR01438 Universal stress protein signature 107 119 5.4E-15 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS15255 55679c0a7a1604136b4037c4d498fc28 147 PRINTS PR01438 Universal stress protein signature 2 20 5.4E-15 T 26-04-2016 IPR006015 Universal stress protein A RGE_RS15255 55679c0a7a1604136b4037c4d498fc28 147 Pfam PF00582 Universal stress protein family 1 146 1.8E-30 T 26-04-2016 IPR006016 UspA GO:0006950 RGE_RS15255 55679c0a7a1604136b4037c4d498fc28 147 SUPERFAMILY SSF52402 1 147 1.0E-33 T 26-04-2016 RGE_RS15255 55679c0a7a1604136b4037c4d498fc28 147 PANTHER PTHR31964:SF26 1 145 5.5E-27 T 26-04-2016 RGE_RS00075 8fdcbd4d5d98b8b021f6b90a2ca6a661 392 PANTHER PTHR30158:SF2 7 392 1.4E-151 T 26-04-2016 RGE_RS00075 8fdcbd4d5d98b8b021f6b90a2ca6a661 392 PANTHER PTHR30158 7 392 1.4E-151 T 26-04-2016 RGE_RS00075 8fdcbd4d5d98b8b021f6b90a2ca6a661 392 Gene3D G3DSA:2.40.50.100 183 215 5.4E-24 T 26-04-2016 RGE_RS00075 8fdcbd4d5d98b8b021f6b90a2ca6a661 392 Gene3D G3DSA:2.40.50.100 75 108 5.4E-24 T 26-04-2016 RGE_RS00075 8fdcbd4d5d98b8b021f6b90a2ca6a661 392 Pfam PF13533 Biotin-lipoyl like 74 122 1.3E-11 T 26-04-2016 RGE_RS00075 8fdcbd4d5d98b8b021f6b90a2ca6a661 392 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 50 380 5.4E-85 T 26-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RGE_RS00075 8fdcbd4d5d98b8b021f6b90a2ca6a661 392 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 166 302 1.9E-9 T 26-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RGE_RS00075 8fdcbd4d5d98b8b021f6b90a2ca6a661 392 SUPERFAMILY SSF111369 65 307 1.7E-64 T 26-04-2016 RGE_RS16920 fdba26969794850b6ad7b22a6f79ce45 158 Pfam PF02600 Disulfide bond formation protein DsbB 8 149 3.7E-28 T 26-04-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 RGE_RS16920 fdba26969794850b6ad7b22a6f79ce45 158 SUPERFAMILY SSF158442 11 150 4.32E-25 T 26-04-2016 RGE_RS16920 fdba26969794850b6ad7b22a6f79ce45 158 Gene3D G3DSA:1.20.1550.10 8 155 3.5E-25 T 26-04-2016 IPR023380 Disulphide bond formation protein DsbB-like domain RGE_RS15680 c64bbeb42497d5bccdf671c22fe548ba 367 Pfam PF06812 ImpA, N-terminal, type VI secretion system 13 131 1.5E-30 T 26-04-2016 IPR010657 ImpA, N-terminal RGE_RS15680 c64bbeb42497d5bccdf671c22fe548ba 367 PANTHER PTHR37951 13 363 5.6E-26 T 26-04-2016 RGE_RS15680 c64bbeb42497d5bccdf671c22fe548ba 367 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 12 358 2.3E-78 T 26-04-2016 IPR017740 Type VI secretion system-associated, ImpA RGE_RS05535 40a2efaf4afe6d58888904c64d872e6e 601 Pfam PF06980 Protein of unknown function (DUF1302) 24 601 1.8E-156 T 26-04-2016 IPR010727 Protein of unknown function DUF1302 RGE_RS20575 6e1cb7a44136b4234dc4864e97eb642d 238 PANTHER PTHR30400:SF0 17 235 1.5E-60 T 26-04-2016 RGE_RS20575 6e1cb7a44136b4234dc4864e97eb642d 238 Pfam PF00912 Transglycosylase 58 232 1.2E-48 T 26-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RGE_RS20575 6e1cb7a44136b4234dc4864e97eb642d 238 Gene3D G3DSA:1.10.3810.10 55 233 2.7E-67 T 26-04-2016 RGE_RS20575 6e1cb7a44136b4234dc4864e97eb642d 238 PANTHER PTHR30400 17 235 1.5E-60 T 26-04-2016 RGE_RS20575 6e1cb7a44136b4234dc4864e97eb642d 238 SUPERFAMILY SSF53955 54 233 2.67E-50 T 26-04-2016 IPR023346 Lysozyme-like domain RGE_RS20575 6e1cb7a44136b4234dc4864e97eb642d 238 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 15 238 1.4E-73 T 26-04-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 RGE_RS17525 3427c75d92a9c64007bcc3bfb4214356 446 SUPERFAMILY SSF49313 244 310 7.06E-8 T 26-04-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 RGE_RS17525 3427c75d92a9c64007bcc3bfb4214356 446 Pfam PF05345 Putative Ig domain 271 298 2.3E-6 T 26-04-2016 IPR008009 Putative Ig RGE_RS17525 3427c75d92a9c64007bcc3bfb4214356 446 Pfam PF05345 Putative Ig domain 395 430 3.6E-6 T 26-04-2016 IPR008009 Putative Ig RGE_RS17525 3427c75d92a9c64007bcc3bfb4214356 446 Gene3D G3DSA:2.60.40.10 365 443 6.8E-6 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS17525 3427c75d92a9c64007bcc3bfb4214356 446 Gene3D G3DSA:2.60.40.10 246 316 5.2E-8 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS02625 61f63b20e9d7192a88a27cb27672f55b 298 PANTHER PTHR30520 8 240 1.5E-75 T 26-04-2016 RGE_RS02625 61f63b20e9d7192a88a27cb27672f55b 298 PANTHER PTHR30520 257 291 1.5E-75 T 26-04-2016 RGE_RS02625 61f63b20e9d7192a88a27cb27672f55b 298 Gene3D G3DSA:1.20.1080.10 41 291 3.4E-73 T 26-04-2016 IPR023271 Aquaporin-like RGE_RS02625 61f63b20e9d7192a88a27cb27672f55b 298 Pfam PF01226 Formate/nitrite transporter 29 287 7.8E-70 T 26-04-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 RGE_RS02625 61f63b20e9d7192a88a27cb27672f55b 298 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 180 190 - T 26-04-2016 IPR024002 Formate/nitrite transporter, conserved site RGE_RS04090 a34e2c664e635491d33b59fcfe2f89e1 86 SUPERFAMILY SSF52091 12 80 3.14E-11 T 26-04-2016 IPR002645 STAS domain RGE_RS04090 a34e2c664e635491d33b59fcfe2f89e1 86 Pfam PF13466 STAS domain 7 75 1.4E-15 T 26-04-2016 IPR002645 STAS domain RGE_RS04090 a34e2c664e635491d33b59fcfe2f89e1 86 Gene3D G3DSA:3.30.750.24 12 80 1.4E-11 T 26-04-2016 IPR002645 STAS domain RGE_RS02405 6d5674ed8b91b16ebfdb0c25d96d6def 63 Pfam PF11146 Protein of unknown function (DUF2905) 2 60 2.3E-18 T 26-04-2016 IPR021320 Protein of unknown function DUF2905 RGE_RS20235 5561e9aa8d2f2569089af27ab26cdeb6 193 SUPERFAMILY SSF51161 9 171 7.9E-28 T 26-04-2016 IPR011004 Trimeric LpxA-like RGE_RS20235 5561e9aa8d2f2569089af27ab26cdeb6 193 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 144 2.8E-6 T 26-04-2016 IPR001451 Hexapeptide repeat RGE_RS20235 5561e9aa8d2f2569089af27ab26cdeb6 193 PANTHER PTHR23416:SF23 44 170 1.8E-15 T 26-04-2016 RGE_RS20235 5561e9aa8d2f2569089af27ab26cdeb6 193 PANTHER PTHR23416 44 170 1.8E-15 T 26-04-2016 RGE_RS20235 5561e9aa8d2f2569089af27ab26cdeb6 193 Gene3D G3DSA:2.160.10.10 31 174 1.2E-28 T 26-04-2016 RGE_RS00795 de3fb1e9259714d69f7e72b1556229a3 67 Gene3D G3DSA:2.60.260.40 20 66 4.9E-18 T 26-04-2016 IPR019401 Zinc finger, CHCC-type RGE_RS00795 de3fb1e9259714d69f7e72b1556229a3 67 Pfam PF10276 Zinc-finger domain 21 56 2.7E-8 T 26-04-2016 IPR019401 Zinc finger, CHCC-type RGE_RS19335 debdb3f348b6e7a196c6edfdc0b6e129 413 Pfam PF02687 FtsX-like permease family 290 404 2.1E-11 T 26-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RGE_RS19335 debdb3f348b6e7a196c6edfdc0b6e129 413 PANTHER PTHR30489 9 413 4.3E-14 T 26-04-2016 RGE_RS05790 b1b3fd7cfb38ce8103f9ab7484b364a2 115 PANTHER PTHR33751:SF3 21 109 1.6E-24 T 26-04-2016 RGE_RS05790 b1b3fd7cfb38ce8103f9ab7484b364a2 115 PANTHER PTHR33751 21 109 1.6E-24 T 26-04-2016 RGE_RS05790 b1b3fd7cfb38ce8103f9ab7484b364a2 115 SUPERFAMILY SSF46626 22 107 9.02E-21 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS05790 b1b3fd7cfb38ce8103f9ab7484b364a2 115 Gene3D G3DSA:1.10.760.10 23 108 3.3E-26 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS05790 b1b3fd7cfb38ce8103f9ab7484b364a2 115 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 40 104 2.5E-8 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS10765 40f0e73994253c2e3c8b798fa2f69b86 54 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 10 33 2.1E-7 T 26-04-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 RGE_RS10765 40f0e73994253c2e3c8b798fa2f69b86 54 Pfam PF04995 Heme exporter protein D (CcmD) 13 49 1.4E-9 T 26-04-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 RGE_RS11065 762c0cb07bb4684b3b604a0ec6f5fb68 154 Pfam PF10027 Predicted integral membrane protein (DUF2269) 5 153 2.5E-50 T 26-04-2016 IPR018729 Protein of unknown function DUF2269, transmembrane RGE_RS07440 4b9bcaef446a2afb37bdd76cfd77836b 274 PIRSF PIRSF009120 1 253 4.9E-112 T 26-04-2016 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 RGE_RS07440 4b9bcaef446a2afb37bdd76cfd77836b 274 Gene3D G3DSA:3.60.20.10 2 205 8.5E-10 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS07440 4b9bcaef446a2afb37bdd76cfd77836b 274 SUPERFAMILY SSF56235 2 245 2.74E-31 T 26-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RGE_RS18255 0ae7a7fac4d02bfa8f80f18f2897b806 420 SUPERFAMILY SSF56935 21 233 2.2E-29 T 26-04-2016 RGE_RS18255 0ae7a7fac4d02bfa8f80f18f2897b806 420 SUPERFAMILY SSF56935 360 420 2.2E-29 T 26-04-2016 RGE_RS18255 0ae7a7fac4d02bfa8f80f18f2897b806 420 SUPERFAMILY SSF56935 264 328 2.2E-29 T 26-04-2016 RGE_RS18255 0ae7a7fac4d02bfa8f80f18f2897b806 420 Gene3D G3DSA:2.40.160.10 29 227 3.1E-12 T 26-04-2016 IPR023614 Porin domain RGE_RS18255 0ae7a7fac4d02bfa8f80f18f2897b806 420 Gene3D G3DSA:2.40.160.10 265 325 3.1E-12 T 26-04-2016 IPR023614 Porin domain RGE_RS18255 0ae7a7fac4d02bfa8f80f18f2897b806 420 Gene3D G3DSA:2.40.160.10 360 400 3.1E-12 T 26-04-2016 IPR023614 Porin domain RGE_RS17040 5a715c77179cdca91add0f6f7004dbfa 339 Gene3D G3DSA:3.40.190.10 134 280 6.6E-36 T 26-04-2016 RGE_RS17040 5a715c77179cdca91add0f6f7004dbfa 339 PANTHER PTHR30222 1 339 1.3E-153 T 26-04-2016 RGE_RS17040 5a715c77179cdca91add0f6f7004dbfa 339 Gene3D G3DSA:3.40.190.10 19 133 1.9E-9 T 26-04-2016 RGE_RS17040 5a715c77179cdca91add0f6f7004dbfa 339 SUPERFAMILY SSF53850 19 336 5.93E-69 T 26-04-2016 RGE_RS17040 5a715c77179cdca91add0f6f7004dbfa 339 Pfam PF13416 Bacterial extracellular solute-binding protein 43 305 6.9E-49 T 26-04-2016 RGE_RS17040 5a715c77179cdca91add0f6f7004dbfa 339 PANTHER PTHR30222:SF2 1 339 1.3E-153 T 26-04-2016 RGE_RS13950 25ff8933f98223d46feca4321d384447 135 SUPERFAMILY SSF52172 1 123 1.22E-20 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS13950 25ff8933f98223d46feca4321d384447 135 Pfam PF00072 Response regulator receiver domain 7 117 3.2E-15 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS13950 25ff8933f98223d46feca4321d384447 135 SMART SM00448 4 119 8.7E-14 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS13950 25ff8933f98223d46feca4321d384447 135 Gene3D G3DSA:3.40.50.2300 5 121 2.3E-18 T 26-04-2016 RGE_RS13950 25ff8933f98223d46feca4321d384447 135 PANTHER PTHR26402 4 117 3.2E-16 T 26-04-2016 RGE_RS06945 f7c473983e0c72ad760d6cc086d8ac09 163 SUPERFAMILY SSF56524 45 162 2.88E-14 T 26-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RGE_RS12355 593ccc0680bf9a2b29983a9f4cc5b88c 72 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 5 71 8.5E-19 T 26-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 RGE_RS12355 593ccc0680bf9a2b29983a9f4cc5b88c 72 SUPERFAMILY SSF50331 6 71 1.04E-18 T 26-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RGE_RS12355 593ccc0680bf9a2b29983a9f4cc5b88c 72 Pfam PF03459 TOBE domain 8 68 2.4E-15 T 26-04-2016 IPR005116 Transport-associated OB, type 1 RGE_RS12355 593ccc0680bf9a2b29983a9f4cc5b88c 72 Gene3D G3DSA:2.40.50.100 6 71 3.8E-23 T 26-04-2016 RGE_RS12350 939c3da5258971e4a85100aed7e17baa 319 PANTHER PTHR30024 1 317 4.0E-99 T 26-04-2016 RGE_RS12350 939c3da5258971e4a85100aed7e17baa 319 SMART SM00062 32 253 5.8E-9 T 26-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RGE_RS12350 939c3da5258971e4a85100aed7e17baa 319 Gene3D G3DSA:3.40.30.10 225 302 5.7E-4 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS12350 939c3da5258971e4a85100aed7e17baa 319 Gene3D G3DSA:3.40.30.10 66 77 5.7E-4 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS12350 939c3da5258971e4a85100aed7e17baa 319 Gene3D G3DSA:3.40.190.10 117 224 7.2E-30 T 26-04-2016 RGE_RS12350 939c3da5258971e4a85100aed7e17baa 319 Pfam PF13379 NMT1-like family 28 259 2.0E-15 T 26-04-2016 RGE_RS12350 939c3da5258971e4a85100aed7e17baa 319 PANTHER PTHR30024:SF11 1 317 4.0E-99 T 26-04-2016 RGE_RS12350 939c3da5258971e4a85100aed7e17baa 319 SUPERFAMILY SSF53850 30 265 5.81E-47 T 26-04-2016 RGE_RS12350 939c3da5258971e4a85100aed7e17baa 319 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 33 315 1.4E-67 T 26-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 RGE_RS16960 1cde2918893e94a5a953d380bb62ab5e 182 Gene3D G3DSA:3.40.50.150 7 157 2.6E-21 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16960 1cde2918893e94a5a953d380bb62ab5e 182 SUPERFAMILY SSF53335 6 143 6.97E-27 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS16960 1cde2918893e94a5a953d380bb62ab5e 182 Pfam PF13649 Methyltransferase domain 24 96 3.3E-8 T 26-04-2016 RGE_RS15660 424de5683bc460db2446fa65ee948bc0 88 PANTHER PTHR37465 3 83 4.8E-12 T 26-04-2016 RGE_RS15660 424de5683bc460db2446fa65ee948bc0 88 PANTHER PTHR37465:SF1 3 83 4.8E-12 T 26-04-2016 RGE_RS15660 424de5683bc460db2446fa65ee948bc0 88 Pfam PF05488 PAAR motif 8 80 6.4E-25 T 26-04-2016 IPR008727 PAAR motif RGE_RS07525 e0a473c55ef9b76e2179c05a7fc16458 154 Pfam PF01878 EVE domain 3 149 6.9E-49 T 26-04-2016 IPR002740 EVE domain RGE_RS07525 e0a473c55ef9b76e2179c05a7fc16458 154 PANTHER PTHR14087 1 150 5.8E-66 T 26-04-2016 RGE_RS07525 e0a473c55ef9b76e2179c05a7fc16458 154 SUPERFAMILY SSF88697 3 152 7.21E-53 T 26-04-2016 IPR015947 PUA-like domain RGE_RS07525 e0a473c55ef9b76e2179c05a7fc16458 154 Gene3D G3DSA:3.10.590.10 3 152 7.1E-26 T 26-04-2016 IPR002740 EVE domain RGE_RS14800 bf9ae234412b4acf92bfb61fbe1b2bcd 103 Pfam PF11804 Protein of unknown function (DUF3325) 10 98 3.0E-19 T 26-04-2016 IPR021762 Protein of unknown function DUF3325 RGE_RS11825 f98ca5856281b574dac252a5b67faa8f 270 PANTHER PTHR10657 44 266 6.2E-37 T 26-04-2016 RGE_RS11825 f98ca5856281b574dac252a5b67faa8f 270 PANTHER PTHR10657:SF11 44 266 6.2E-37 T 26-04-2016 RGE_RS11825 f98ca5856281b574dac252a5b67faa8f 270 Pfam PF13616 PPIC-type PPIASE domain 136 226 1.4E-23 T 26-04-2016 RGE_RS11825 f98ca5856281b574dac252a5b67faa8f 270 SUPERFAMILY SSF109998 30 164 1.73E-19 T 26-04-2016 IPR027304 Trigger factor/SurA domain RGE_RS11825 f98ca5856281b574dac252a5b67faa8f 270 SUPERFAMILY SSF54534 119 225 1.64E-30 T 26-04-2016 RGE_RS11825 f98ca5856281b574dac252a5b67faa8f 270 Gene3D G3DSA:3.10.50.40 133 248 1.2E-42 T 26-04-2016 RGE_RS06585 06842b2b0980d03e5313087a0bac63f8 114 Pfam PF04342 Putative member of DMT superfamily (DUF486) 7 112 6.1E-46 T 26-04-2016 IPR007437 Putative member of DMT superfamily RGE_RS06585 06842b2b0980d03e5313087a0bac63f8 114 PIRSF PIRSF021239 2 114 5.6E-52 T 26-04-2016 IPR007437 Putative member of DMT superfamily RGE_RS06585 06842b2b0980d03e5313087a0bac63f8 114 PANTHER PTHR38482 1 114 2.4E-56 T 26-04-2016 RGE_RS14015 a828068562ff9f82c0a0771ee78b79b9 322 PANTHER PTHR12358:SF33 62 322 7.8E-17 T 26-04-2016 RGE_RS14015 a828068562ff9f82c0a0771ee78b79b9 322 SUPERFAMILY SSF111331 23 321 9.81E-53 T 26-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain RGE_RS14015 a828068562ff9f82c0a0771ee78b79b9 322 Pfam PF00781 Diacylglycerol kinase catalytic domain 25 147 2.9E-18 T 26-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RGE_RS14015 a828068562ff9f82c0a0771ee78b79b9 322 PANTHER PTHR12358 62 322 7.8E-17 T 26-04-2016 RGE_RS12905 fcc89849ebceb880f9e5630d6993b00f 350 Pfam PF01594 Domain of unknown function DUF20 29 338 1.4E-47 T 26-04-2016 IPR002549 Transmembrane protein TqsA-like RGE_RS12905 fcc89849ebceb880f9e5630d6993b00f 350 PANTHER PTHR21716:SF7 28 346 5.6E-65 T 26-04-2016 RGE_RS12905 fcc89849ebceb880f9e5630d6993b00f 350 PANTHER PTHR21716 28 346 5.6E-65 T 26-04-2016 IPR002549 Transmembrane protein TqsA-like RGE_RS09010 18550d8c32dc25940a6cf4969ed097c4 214 PANTHER PTHR30055 12 179 7.5E-22 T 26-04-2016 RGE_RS09010 18550d8c32dc25940a6cf4969ed097c4 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 1.6E-10 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS09010 18550d8c32dc25940a6cf4969ed097c4 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 1.6E-10 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS09010 18550d8c32dc25940a6cf4969ed097c4 214 PANTHER PTHR30055:SF72 12 179 7.5E-22 T 26-04-2016 RGE_RS09010 18550d8c32dc25940a6cf4969ed097c4 214 Gene3D G3DSA:1.10.357.10 8 206 1.9E-30 T 26-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RGE_RS09010 18550d8c32dc25940a6cf4969ed097c4 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 70 8.2E-17 T 26-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RGE_RS09010 18550d8c32dc25940a6cf4969ed097c4 214 SUPERFAMILY SSF46689 11 76 1.59E-19 T 26-04-2016 IPR009057 Homeodomain-like GO:0003677 RGE_RS11425 d54f07c174291279c312d3dd1ecce89c 125 Pfam PF06073 Bacterial protein of unknown function (DUF934) 15 118 4.3E-32 T 26-04-2016 IPR008318 Uncharacterised conserved protein UCP030820 RGE_RS10215 48d34529cdfa5cebb36095b980214df8 426 Pfam PF03600 Citrate transporter 8 373 2.2E-34 T 26-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 RGE_RS10215 48d34529cdfa5cebb36095b980214df8 426 PANTHER PTHR10283 4 420 1.3E-158 T 26-04-2016 RGE_RS10215 48d34529cdfa5cebb36095b980214df8 426 PANTHER PTHR10283:SF103 4 420 1.3E-158 T 26-04-2016 RGE_RS12180 1f080fc41555c850fbf1cd72d0af506a 197 Gene3D G3DSA:1.20.120.520 32 147 4.3E-13 T 26-04-2016 RGE_RS12180 1f080fc41555c850fbf1cd72d0af506a 197 Pfam PF01814 Hemerythrin HHE cation binding domain 12 128 1.3E-15 T 26-04-2016 IPR012312 Haemerythrin-like RGE_RS05270 123c22087a95f02c44403594f45d33be 370 Pfam PF04230 Polysaccharide pyruvyl transferase 50 302 2.1E-25 T 26-04-2016 IPR007345 Polysaccharide pyruvyl transferase RGE_RS05270 123c22087a95f02c44403594f45d33be 370 PANTHER PTHR36836:SF1 146 365 5.4E-21 T 26-04-2016 RGE_RS05270 123c22087a95f02c44403594f45d33be 370 PANTHER PTHR36836 146 365 5.4E-21 T 26-04-2016 RGE_RS06340 3ead2e24e7d295e7a9eb5ff3c949a3df 148 PANTHER PTHR36929 3 143 6.4E-26 T 26-04-2016 RGE_RS06340 3ead2e24e7d295e7a9eb5ff3c949a3df 148 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 13 142 4.0E-30 T 26-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 RGE_RS06340 3ead2e24e7d295e7a9eb5ff3c949a3df 148 Gene3D G3DSA:3.30.530.20 3 144 1.7E-42 T 26-04-2016 IPR023393 START-like domain RGE_RS06340 3ead2e24e7d295e7a9eb5ff3c949a3df 148 SUPERFAMILY SSF55961 1 144 2.55E-43 T 26-04-2016 RGE_RS06340 3ead2e24e7d295e7a9eb5ff3c949a3df 148 PANTHER PTHR36929:SF1 3 143 6.4E-26 T 26-04-2016 RGE_RS02660 ce93d4fc5d5d2924c7f2a82095edecb1 206 Pfam PF11769 Protein of unknown function (DUF3313) 16 182 7.2E-20 T 26-04-2016 IPR021747 Protein of unknown function DUF3313 RGE_RS09155 d40527e17456c5a24c44cfacc146317a 408 Pfam PF05940 NnrS protein 15 397 6.0E-74 T 26-04-2016 IPR010266 NnrS RGE_RS08450 0223f1a54c2d40da8e7e33298cc293a7 97 SUPERFAMILY SSF101498 7 85 2.09E-11 T 26-04-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 RGE_RS08450 0223f1a54c2d40da8e7e33298cc293a7 97 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 9 87 1.7E-13 T 26-04-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 RGE_RS08450 0223f1a54c2d40da8e7e33298cc293a7 97 Pfam PF04316 Anti-sigma-28 factor, FlgM 38 84 6.4E-9 T 26-04-2016 IPR031316 Anti-sigma-28 factor FlgM, C-terminal RGE_RS00295 e4805b0fdfac7ddb72225985d5adff31 183 SUPERFAMILY SSF53474 6 174 1.06E-31 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS00295 e4805b0fdfac7ddb72225985d5adff31 183 Pfam PF06821 Serine hydrolase 7 175 5.6E-52 T 26-04-2016 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RGE_RS00295 e4805b0fdfac7ddb72225985d5adff31 183 Gene3D G3DSA:3.40.50.1820 5 176 2.4E-40 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS20365 f8d382e7b8cad5fa4f6eab8b0e3b46b1 373 PANTHER PTHR35457 97 242 2.5E-53 T 26-04-2016 RGE_RS20365 f8d382e7b8cad5fa4f6eab8b0e3b46b1 373 PANTHER PTHR35457 265 372 2.5E-53 T 26-04-2016 RGE_RS20365 f8d382e7b8cad5fa4f6eab8b0e3b46b1 373 PANTHER PTHR35457 14 81 2.5E-53 T 26-04-2016 RGE_RS20365 f8d382e7b8cad5fa4f6eab8b0e3b46b1 373 PANTHER PTHR35457:SF1 97 242 2.5E-53 T 26-04-2016 RGE_RS20365 f8d382e7b8cad5fa4f6eab8b0e3b46b1 373 PANTHER PTHR35457:SF1 265 372 2.5E-53 T 26-04-2016 RGE_RS20365 f8d382e7b8cad5fa4f6eab8b0e3b46b1 373 PANTHER PTHR35457:SF1 14 81 2.5E-53 T 26-04-2016 RGE_RS20365 f8d382e7b8cad5fa4f6eab8b0e3b46b1 373 Pfam PF02628 Cytochrome oxidase assembly protein 43 349 4.8E-74 T 26-04-2016 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 UniPathway: UPA00269 RGE_RS13405 e40fe727a076014d2ab1771f28f56b86 425 Pfam PF04551 GcpE protein 32 411 8.0E-113 T 26-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RGE_RS13405 e40fe727a076014d2ab1771f28f56b86 425 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 19 415 28.621 T 26-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RGE_RS13405 e40fe727a076014d2ab1771f28f56b86 425 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 31 411 3.5E-116 T 26-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RGE_RS13405 e40fe727a076014d2ab1771f28f56b86 425 SUPERFAMILY SSF56014 308 415 1.63E-7 T 26-04-2016 RGE_RS13405 e40fe727a076014d2ab1771f28f56b86 425 PIRSF PIRSF004640 14 421 2.3E-127 T 26-04-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RGE_RS13405 e40fe727a076014d2ab1771f28f56b86 425 PANTHER PTHR30454 32 417 1.3E-137 T 26-04-2016 RGE_RS04785 f419a2a5de612c2af2268ee7429e5aa2 336 PANTHER PTHR40031 2 325 1.8E-45 T 26-04-2016 RGE_RS04785 f419a2a5de612c2af2268ee7429e5aa2 336 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 178 6.7E-28 T 26-04-2016 IPR007404 LexA-binding, inner membrane-associated putative hydrolase RGE_RS04785 f419a2a5de612c2af2268ee7429e5aa2 336 PANTHER PTHR40031:SF1 2 325 1.8E-45 T 26-04-2016 RGE_RS12370 05aeb1d8e5469f86edbe2bcd78f10816 389 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 2 387 68.207 T 26-04-2016 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 RGE_RS12370 05aeb1d8e5469f86edbe2bcd78f10816 389 PANTHER PTHR30011 1 385 1.9E-183 T 26-04-2016 RGE_RS12370 05aeb1d8e5469f86edbe2bcd78f10816 389 PANTHER PTHR30011:SF1 1 385 1.9E-183 T 26-04-2016 RGE_RS12370 05aeb1d8e5469f86edbe2bcd78f10816 389 Gene3D G3DSA:3.20.20.30 296 373 3.1E-105 T 26-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RGE_RS12370 05aeb1d8e5469f86edbe2bcd78f10816 389 Gene3D G3DSA:3.20.20.30 1 264 3.1E-105 T 26-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RGE_RS12370 05aeb1d8e5469f86edbe2bcd78f10816 389 Pfam PF00296 Luciferase-like monooxygenase 1 334 1.2E-85 T 26-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RGE_RS12370 05aeb1d8e5469f86edbe2bcd78f10816 389 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 2 357 2.4E-180 T 26-04-2016 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 RGE_RS12370 05aeb1d8e5469f86edbe2bcd78f10816 389 SUPERFAMILY SSF51679 1 357 1.7E-95 T 26-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RGE_RS21950 3e9c810e8a261d4bbdfcc196925e2401 407 Gene3D G3DSA:3.40.50.150 127 405 1.6E-93 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS21950 3e9c810e8a261d4bbdfcc196925e2401 407 PIRSF PIRSF003085 16 407 1.3E-121 T 26-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 RGE_RS21950 3e9c810e8a261d4bbdfcc196925e2401 407 Pfam PF02353 Mycolic acid cyclopropane synthetase 131 402 4.4E-84 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS21950 3e9c810e8a261d4bbdfcc196925e2401 407 SUPERFAMILY SSF53335 139 406 1.71E-77 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS21950 3e9c810e8a261d4bbdfcc196925e2401 407 PANTHER PTHR10108:SF795 61 321 1.5E-94 T 26-04-2016 RGE_RS21950 3e9c810e8a261d4bbdfcc196925e2401 407 PANTHER PTHR10108:SF795 338 406 1.5E-94 T 26-04-2016 RGE_RS21950 3e9c810e8a261d4bbdfcc196925e2401 407 PANTHER PTHR10108 61 321 1.5E-94 T 26-04-2016 RGE_RS21950 3e9c810e8a261d4bbdfcc196925e2401 407 PANTHER PTHR10108 338 406 1.5E-94 T 26-04-2016 RGE_RS21730 105f904bae50a186d04f53b5f15cde1d 224 SUPERFAMILY SSF53300 73 187 1.5E-13 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS21730 105f904bae50a186d04f53b5f15cde1d 224 Pfam PF13519 von Willebrand factor type A domain 73 172 8.1E-8 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS13695 149078e7115be48c554013dab08bd472 173 Pfam PF06271 RDD family 14 161 2.7E-22 T 26-04-2016 IPR010432 RDD RGE_RS14995 7c450f5213d9e3bbeea4fa14fa3451d4 44 Gene3D G3DSA:1.10.10.10 1 39 7.6E-13 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS14995 7c450f5213d9e3bbeea4fa14fa3451d4 44 Pfam PF01638 HxlR-like helix-turn-helix 1 38 1.2E-8 T 26-04-2016 IPR002577 Helix-turn-helix, HxlR type RGE_RS14995 7c450f5213d9e3bbeea4fa14fa3451d4 44 SUPERFAMILY SSF46785 1 37 8.66E-8 T 26-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RGE_RS13215 4dae25fcb7f138ccd5c351ec5f78683c 97 PIRSF PIRSF003135 1 93 1.4E-11 T 26-04-2016 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 RGE_RS13215 4dae25fcb7f138ccd5c351ec5f78683c 97 SUPERFAMILY SSF50249 1 90 8.05E-12 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS13215 4dae25fcb7f138ccd5c351ec5f78683c 97 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 2 93 2.4E-25 T 26-04-2016 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 RGE_RS13215 4dae25fcb7f138ccd5c351ec5f78683c 97 Gene3D G3DSA:2.40.50.140 1 92 2.6E-21 T 26-04-2016 IPR012340 Nucleic acid-binding, OB-fold RGE_RS01050 542d0c02d3fc3013f8c561927e1cf34f 247 SUPERFAMILY SSF51735 16 211 2.02E-7 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS01050 542d0c02d3fc3013f8c561927e1cf34f 247 Gene3D G3DSA:3.40.50.720 16 183 1.8E-11 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS21725 08786ed235db87fa491d3c556eb8cf71 122 Pfam PF07845 Protein of unknown function (DUF1636) 7 120 2.5E-33 T 26-04-2016 IPR012863 Protein of unknown function DUF1636 RGE_RS19765 9e24b95842f4838db5cfed61afead7c9 350 Pfam PF09925 Predicted membrane protein (DUF2157) 13 110 5.4E-7 T 26-04-2016 IPR018677 Domain of unknown function DUF2157 RGE_RS09985 30a5ca48abbd8052293905cbece0934e 658 Pfam PF05787 Bacterial protein of unknown function (DUF839) 214 593 6.2E-22 T 26-04-2016 IPR008557 Protein of unknown function DUF839 RGE_RS23325 b11e27fc4ddaa25192e19036a5dc26f7 202 SUPERFAMILY SSF51182 102 195 1.91E-15 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS23325 b11e27fc4ddaa25192e19036a5dc26f7 202 Pfam PF16867 Dimethlysulfonioproprionate lyase 45 187 1.5E-23 T 26-04-2016 IPR031723 Dimethlysulfonioproprionate lyase DddL GO:0047869 KEGG: 00920+4.4.1.3|MetaCyc: PWY-6046|MetaCyc: PWY-6049 RGE_RS23325 b11e27fc4ddaa25192e19036a5dc26f7 202 Gene3D G3DSA:2.60.120.10 96 183 4.9E-12 T 26-04-2016 IPR014710 RmlC-like jelly roll fold RGE_RS09210 95df745a324dc63a683fb0eeff7be973 210 Gene3D G3DSA:3.40.50.720 1 194 1.1E-50 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS09210 95df745a324dc63a683fb0eeff7be973 210 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 5 91 1.6E-17 T 26-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RGE_RS09210 95df745a324dc63a683fb0eeff7be973 210 PANTHER PTHR14239 5 186 4.2E-41 T 26-04-2016 RGE_RS09210 95df745a324dc63a683fb0eeff7be973 210 SUPERFAMILY SSF51735 1 198 2.83E-41 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS06445 77ca19c6757378a52a39d379e5afe442 261 PANTHER PTHR30283:SF3 2 261 3.1E-92 T 26-04-2016 RGE_RS06445 77ca19c6757378a52a39d379e5afe442 261 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 258 33.406 T 26-04-2016 IPR005583 Peroxide stress protein YaaA RGE_RS06445 77ca19c6757378a52a39d379e5afe442 261 Pfam PF03883 Protein of unknown function (DUF328) 1 246 1.9E-84 T 26-04-2016 IPR005583 Peroxide stress protein YaaA RGE_RS06445 77ca19c6757378a52a39d379e5afe442 261 PANTHER PTHR30283 2 261 3.1E-92 T 26-04-2016 RGE_RS11845 3f614966b7751885ddbaa0c9ccbc56c7 497 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 34 467 4.3E-130 T 26-04-2016 IPR003846 Uncharacterised protein family UPF0061 RGE_RS11845 3f614966b7751885ddbaa0c9ccbc56c7 497 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 2 483 41.811 T 26-04-2016 IPR003846 Uncharacterised protein family UPF0061 RGE_RS11845 3f614966b7751885ddbaa0c9ccbc56c7 497 PANTHER PTHR32057 3 497 6.3E-192 T 26-04-2016 RGE_RS16350 9797c83555b5183ba7d225149a254a3e 276 Pfam PF12291 Protein of unknown function (DUF3623) 1 254 5.1E-111 T 26-04-2016 IPR017496 Photosynthetic complex assembly protein 2, putative RGE_RS16350 9797c83555b5183ba7d225149a254a3e 276 TIGRFAM TIGR03055 photo_alph_chp2: putative photosynthetic complex assembly protein 2 7 249 3.1E-97 T 26-04-2016 IPR017496 Photosynthetic complex assembly protein 2, putative RGE_RS07010 11f96e4631c71cd5e0ca7940e7634a72 412 Gene3D G3DSA:3.40.50.1820 330 411 2.5E-26 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07010 11f96e4631c71cd5e0ca7940e7634a72 412 Gene3D G3DSA:3.40.50.1820 156 275 2.5E-26 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS07010 11f96e4631c71cd5e0ca7940e7634a72 412 Pfam PF07819 PGAP1-like protein 221 276 2.5E-9 T 26-04-2016 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 RGE_RS07010 11f96e4631c71cd5e0ca7940e7634a72 412 SUPERFAMILY SSF53474 152 410 1.41E-22 T 26-04-2016 IPR029058 Alpha/Beta hydrolase fold RGE_RS14195 dc2f327761105f9713621fd925eb720f 364 Pfam PF03739 Predicted permease YjgP/YjgQ family 9 346 4.6E-56 T 26-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 RGE_RS14195 dc2f327761105f9713621fd925eb720f 364 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 347 5.8E-108 T 26-04-2016 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 RGE_RS14195 dc2f327761105f9713621fd925eb720f 364 PANTHER PTHR33529:SF2 1 348 5.8E-53 T 26-04-2016 RGE_RS14195 dc2f327761105f9713621fd925eb720f 364 PANTHER PTHR33529 1 348 5.8E-53 T 26-04-2016 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 PANTHER PTHR21432 25 67 9.0E-113 T 26-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 PANTHER PTHR21432 305 331 9.0E-113 T 26-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 PANTHER PTHR21432 422 650 9.0E-113 T 26-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 PANTHER PTHR21432 96 277 9.0E-113 T 26-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 430 593 1.2E-45 T 26-04-2016 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 SUPERFAMILY SSF100950 227 268 1.61E-39 T 26-04-2016 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 SUPERFAMILY SSF100950 295 323 1.61E-39 T 26-04-2016 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 SUPERFAMILY SSF100950 416 614 1.61E-39 T 26-04-2016 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 Gene3D G3DSA:3.40.810.20 478 572 6.0E-10 T 26-04-2016 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 Gene3D G3DSA:3.30.750.70 421 445 9.5E-34 T 26-04-2016 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 Gene3D G3DSA:3.30.750.70 226 330 9.5E-34 T 26-04-2016 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 PANTHER PTHR21432:SF18 25 67 9.0E-113 T 26-04-2016 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 PANTHER PTHR21432:SF18 305 331 9.0E-113 T 26-04-2016 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 PANTHER PTHR21432:SF18 422 650 9.0E-113 T 26-04-2016 RGE_RS07130 839bfefece5da18c9c1757bfb95c6266 706 PANTHER PTHR21432:SF18 96 277 9.0E-113 T 26-04-2016 RGE_RS09185 2b9a46ee21a532fa02495107adb776aa 123 Gene3D G3DSA:3.30.420.180 2 118 3.1E-17 T 26-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 RGE_RS09185 2b9a46ee21a532fa02495107adb776aa 123 Pfam PF01890 Cobalamin synthesis G C-terminus 2 116 5.7E-14 T 26-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 RGE_RS09185 2b9a46ee21a532fa02495107adb776aa 123 SUPERFAMILY SSF159664 1 118 5.89E-21 T 26-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 RGE_RS02435 172c3cde175ca0d427b7e56a1a3495d6 113 Pfam PF11142 Protein of unknown function (DUF2917) 17 79 8.4E-19 T 26-04-2016 IPR021317 Protein of unknown function DUF2917 RGE_RS02185 016d0a684e785a9d34eaf1fbe8012243 114 Gene3D G3DSA:3.40.50.150 1 73 1.0E-14 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS02185 016d0a684e785a9d34eaf1fbe8012243 114 Pfam PF05050 Methyltransferase FkbM domain 2 72 3.4E-8 T 26-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RGE_RS02185 016d0a684e785a9d34eaf1fbe8012243 114 SUPERFAMILY SSF53335 1 82 1.51E-15 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS20240 b16882a473c93233b5bd323fce5b0f6e 428 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 318 402 1.8E-9 T 26-04-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain RGE_RS01965 8512a35aec69a583b88d62517a7b8ef2 96 TIGRFAM TIGR04353 PqqD_rel_X: PqqD family protein, HPr-rel-A system 16 90 3.9E-15 T 26-04-2016 IPR027599 PqqD family protein, HPr-rel-A system RGE_RS12470 6d370810557427c9894c4a722126d933 315 Gene3D G3DSA:3.10.350.10 9 51 1.3E-15 T 26-04-2016 IPR018392 LysM domain RGE_RS12470 6d370810557427c9894c4a722126d933 315 Pfam PF01476 LysM domain 9 51 2.5E-11 T 26-04-2016 IPR018392 LysM domain RGE_RS12470 6d370810557427c9894c4a722126d933 315 SMART SM00257 8 52 1.5E-14 T 26-04-2016 IPR018392 LysM domain RGE_RS12470 6d370810557427c9894c4a722126d933 315 Pfam PF11860 Protein of unknown function (DUF3380) 106 309 6.3E-46 T 26-04-2016 IPR024408 Domain of unknown function DUF3380 RGE_RS12470 6d370810557427c9894c4a722126d933 315 SUPERFAMILY SSF54106 9 51 1.44E-10 T 26-04-2016 IPR018392 LysM domain RGE_RS12410 ec80444a9275cbe756b9909d5c4f9a66 229 PANTHER PTHR30614 1 227 5.2E-65 T 26-04-2016 RGE_RS12410 ec80444a9275cbe756b9909d5c4f9a66 229 SUPERFAMILY SSF161098 14 210 3.79E-40 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12410 ec80444a9275cbe756b9909d5c4f9a66 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 119 1.3E-15 T 26-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RGE_RS12410 ec80444a9275cbe756b9909d5c4f9a66 229 Gene3D G3DSA:1.10.3720.10 13 224 4.1E-46 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS12410 ec80444a9275cbe756b9909d5c4f9a66 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 223 1.4E-14 T 26-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RGE_RS00185 472e186804c7237f5ba8231dd2462a76 153 PANTHER PTHR37952:SF2 1 143 3.9E-67 T 26-04-2016 RGE_RS00185 472e186804c7237f5ba8231dd2462a76 153 PIRSF PIRSF003174 1 153 2.1E-69 T 26-04-2016 IPR010292 Uncharacterised protein family CreA RGE_RS00185 472e186804c7237f5ba8231dd2462a76 153 Pfam PF05981 CreA protein 19 145 1.1E-55 T 26-04-2016 IPR010292 Uncharacterised protein family CreA RGE_RS00185 472e186804c7237f5ba8231dd2462a76 153 PANTHER PTHR37952 1 143 3.9E-67 T 26-04-2016 RGE_RS13455 19bbfddb9d1753702e2a0cba8623991f 67 Pfam PF04325 Protein of unknown function (DUF465) 14 58 6.7E-11 T 26-04-2016 IPR007420 Protein of unknown function DUF465 RGE_RS00315 4c63ac95b4b7cb759114268fa80a3f31 520 PANTHER PTHR30029 19 520 6.4E-220 T 26-04-2016 RGE_RS00315 4c63ac95b4b7cb759114268fa80a3f31 520 PANTHER PTHR30029:SF2 19 520 6.4E-220 T 26-04-2016 RGE_RS00315 4c63ac95b4b7cb759114268fa80a3f31 520 Pfam PF04293 SpoVR like protein 29 461 3.8E-176 T 26-04-2016 IPR007390 Sporulation stage V, protein R RGE_RS13360 6fcc99dac3f8a62416d2877246f50141 61 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 59 5.9E-21 T 26-04-2016 IPR019201 Protein of unknown function DUF2065 RGE_RS16490 6bd1db9607129763cecb7d7fe5bdefeb 153 Gene3D G3DSA:3.40.50.1240 1 148 1.7E-30 T 26-04-2016 IPR029033 Histidine phosphatase superfamily RGE_RS16490 6bd1db9607129763cecb7d7fe5bdefeb 153 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 70 5.3E-13 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS16490 6bd1db9607129763cecb7d7fe5bdefeb 153 SUPERFAMILY SSF53254 3 143 5.63E-25 T 26-04-2016 IPR029033 Histidine phosphatase superfamily RGE_RS16490 6bd1db9607129763cecb7d7fe5bdefeb 153 SMART SM00855 2 109 5.1E-12 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS14115 cc0f7a9054a3ecd89101c7a780e1670b 158 PIRSF PIRSF010312 7 158 1.3E-29 T 26-04-2016 IPR016568 Sulphur oxidation, SoxY RGE_RS14115 cc0f7a9054a3ecd89101c7a780e1670b 158 Pfam PF13501 Sulfur oxidation protein SoxY 55 156 4.5E-26 T 26-04-2016 IPR032711 Ig-like SoxY domain RGE_RS17805 0815b7b590380df5ade4878fba0d6d73 417 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 2 409 2.9E-84 T 26-04-2016 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 UniPathway: UPA00252 RGE_RS17805 0815b7b590380df5ade4878fba0d6d73 417 Pfam PF07219 HemY protein N-terminus 26 137 5.1E-20 T 26-04-2016 IPR010817 HemY, N-terminal UniPathway: UPA00252 RGE_RS14680 315f81cf6bb30fa407353bd991fd4992 94 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 23 73 8.9E-7 T 26-04-2016 IPR012933 HicA mRNA interferase family GO:0003729 RGE_RS03275 7df0f6019627f88aa2d7816b70f1d8fb 164 PANTHER PTHR30154 6 163 2.1E-42 T 26-04-2016 RGE_RS03275 7df0f6019627f88aa2d7816b70f1d8fb 164 PANTHER PTHR30154:SF21 6 163 2.1E-42 T 26-04-2016 RGE_RS14955 d011e0b04d3c1db5f59163606294f766 92 SUPERFAMILY SSF56954 1 90 8.89E-14 T 26-04-2016 RGE_RS14955 d011e0b04d3c1db5f59163606294f766 92 Gene3D G3DSA:1.20.1600.10 1 89 2.5E-14 T 26-04-2016 RGE_RS14955 d011e0b04d3c1db5f59163606294f766 92 Pfam PF02321 Outer membrane efflux protein 6 83 2.3E-5 T 26-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RGE_RS05705 126fe0bd77579005fb9e05cd86ab2d83 134 Pfam PF00581 Rhodanese-like domain 39 125 1.7E-12 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS05705 126fe0bd77579005fb9e05cd86ab2d83 134 Gene3D G3DSA:3.40.250.10 37 130 1.5E-24 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS05705 126fe0bd77579005fb9e05cd86ab2d83 134 SUPERFAMILY SSF52821 12 131 8.51E-28 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS05705 126fe0bd77579005fb9e05cd86ab2d83 134 SMART SM00450 34 129 3.1E-16 T 26-04-2016 IPR001763 Rhodanese-like domain RGE_RS10910 2052aa75e006ece51a71c5da95b91a5a 71 Gene3D G3DSA:1.10.1220.10 9 46 3.1E-5 T 26-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RGE_RS10910 2052aa75e006ece51a71c5da95b91a5a 71 SUPERFAMILY SSF47598 5 46 3.61E-9 T 26-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RGE_RS19400 cfebd13729db102b3b9dd4e26d0e13f9 383 PANTHER PTHR34219:SF3 1 370 8.7E-74 T 26-04-2016 RGE_RS19400 cfebd13729db102b3b9dd4e26d0e13f9 383 PANTHER PTHR34219 1 370 8.7E-74 T 26-04-2016 RGE_RS19400 cfebd13729db102b3b9dd4e26d0e13f9 383 Pfam PF03929 PepSY-associated TM region 11 362 3.9E-56 T 26-04-2016 IPR005625 PepSY-associated TM protein RGE_RS03535 d422685d7c79faf3f789541417b27010 144 Pfam PF00034 Cytochrome c 54 129 2.1E-11 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03535 d422685d7c79faf3f789541417b27010 144 Gene3D G3DSA:1.10.760.10 32 128 6.9E-19 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS03535 d422685d7c79faf3f789541417b27010 144 SUPERFAMILY SSF46626 39 140 2.03E-18 T 26-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RGE_RS02230 e3ac77752fdb3c831f4e0e9eb575bb88 772 Pfam PF07793 Protein of unknown function (DUF1631) 5 763 6.4E-129 T 26-04-2016 IPR012434 Protein of unknown function DUF1631 RGE_RS18850 7b3ec023f270739155a0d29aed8c44e2 265 Pfam PF06629 MltA-interacting protein MipA 27 254 2.8E-32 T 26-04-2016 IPR010583 MltA-interacting MipA RGE_RS11200 870d3e78b617023501ad1a10c6b43c92 61 SUPERFAMILY SSF69047 1 55 3.14E-12 T 26-04-2016 IPR008462 CsbD-like RGE_RS11200 870d3e78b617023501ad1a10c6b43c92 61 Pfam PF05532 CsbD-like 4 55 8.4E-15 T 26-04-2016 IPR008462 CsbD-like RGE_RS11200 870d3e78b617023501ad1a10c6b43c92 61 Gene3D G3DSA:1.10.1470.10 1 55 1.7E-15 T 26-04-2016 IPR008462 CsbD-like RGE_RS22475 34837d8edb5e063449285fb72113b28f 212 PANTHER PTHR13887:SF10 1 211 3.2E-51 T 26-04-2016 RGE_RS22475 34837d8edb5e063449285fb72113b28f 212 Pfam PF01323 DSBA-like thioredoxin domain 6 205 1.3E-33 T 26-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RGE_RS22475 34837d8edb5e063449285fb72113b28f 212 SUPERFAMILY SSF52833 4 211 3.27E-48 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS22475 34837d8edb5e063449285fb72113b28f 212 Gene3D G3DSA:3.40.30.10 2 208 7.6E-49 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS22475 34837d8edb5e063449285fb72113b28f 212 PANTHER PTHR13887 1 211 3.2E-51 T 26-04-2016 RGE_RS02505 838da45a501b0ccf0fc95f5be29fe7e3 442 Pfam PF07804 HipA-like C-terminal domain 225 366 9.2E-25 T 26-04-2016 IPR012893 HipA-like, C-terminal RGE_RS02505 838da45a501b0ccf0fc95f5be29fe7e3 442 Pfam PF13657 HipA N-terminal domain 3 99 3.1E-13 T 26-04-2016 IPR017508 HipA, N-terminal subdomain 1 RGE_RS02505 838da45a501b0ccf0fc95f5be29fe7e3 442 Pfam PF07805 HipA-like N-terminal domain 139 217 6.6E-10 T 26-04-2016 IPR012894 HipA, N-terminal subdomain 2 RGE_RS22995 c6290b8bd82df33567d765b259f9fd9a 263 Gene3D G3DSA:2.40.400.10 21 241 2.7E-19 T 26-04-2016 IPR023375 Acetoacetate decarboxylase beta barrel domain KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RGE_RS22995 c6290b8bd82df33567d765b259f9fd9a 263 Pfam PF06314 Acetoacetate decarboxylase (ADC) 13 248 3.7E-28 T 26-04-2016 IPR010451 Acetoacetate decarboxylase GO:0016829 KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RGE_RS22995 c6290b8bd82df33567d765b259f9fd9a 263 SUPERFAMILY SSF160104 11 257 1.57E-21 T 26-04-2016 RGE_RS02070 dde1d355cc69b30401e85260108e2734 410 PANTHER PTHR12526 101 397 1.6E-54 T 26-04-2016 RGE_RS02070 dde1d355cc69b30401e85260108e2734 410 SUPERFAMILY SSF53756 72 395 5.32E-71 T 26-04-2016 RGE_RS02070 dde1d355cc69b30401e85260108e2734 410 Pfam PF13439 Glycosyltransferase Family 4 70 202 2.3E-18 T 26-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RGE_RS02070 dde1d355cc69b30401e85260108e2734 410 Pfam PF00534 Glycosyl transferases group 1 210 378 1.0E-28 T 26-04-2016 IPR001296 Glycosyl transferase, family 1 RGE_RS02070 dde1d355cc69b30401e85260108e2734 410 Gene3D G3DSA:3.40.50.2000 186 366 2.1E-32 T 26-04-2016 RGE_RS18115 47275f3e0802ca0b2106da7e7e4b13e7 336 PANTHER PTHR35609:SF1 1 321 3.8E-45 T 26-04-2016 RGE_RS18115 47275f3e0802ca0b2106da7e7e4b13e7 336 PANTHER PTHR35609 1 321 3.8E-45 T 26-04-2016 RGE_RS06390 6b20dc5ecdb10fdfe942cecced4df1df 155 SUPERFAMILY SSF55729 5 154 4.29E-25 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06390 6b20dc5ecdb10fdfe942cecced4df1df 155 PANTHER PTHR23091:SF36 16 155 1.0E-34 T 26-04-2016 RGE_RS06390 6b20dc5ecdb10fdfe942cecced4df1df 155 Pfam PF00583 Acetyltransferase (GNAT) family 56 133 5.3E-12 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS06390 6b20dc5ecdb10fdfe942cecced4df1df 155 Gene3D G3DSA:3.40.630.30 5 154 5.5E-26 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS06390 6b20dc5ecdb10fdfe942cecced4df1df 155 PANTHER PTHR23091 16 155 1.0E-34 T 26-04-2016 RGE_RS21890 5f6e669c755805fd86fc13c8d01d2423 222 PANTHER PTHR20935:SF1 1 128 4.7E-14 T 26-04-2016 RGE_RS21890 5f6e669c755805fd86fc13c8d01d2423 222 PANTHER PTHR20935:SF1 149 220 4.7E-14 T 26-04-2016 RGE_RS21890 5f6e669c755805fd86fc13c8d01d2423 222 SUPERFAMILY SSF53254 1 219 2.62E-35 T 26-04-2016 IPR029033 Histidine phosphatase superfamily RGE_RS21890 5f6e669c755805fd86fc13c8d01d2423 222 SMART SM00855 3 165 4.6E-8 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS21890 5f6e669c755805fd86fc13c8d01d2423 222 Gene3D G3DSA:3.40.50.1240 3 213 2.5E-26 T 26-04-2016 IPR029033 Histidine phosphatase superfamily RGE_RS21890 5f6e669c755805fd86fc13c8d01d2423 222 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 205 1.0E-17 T 26-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RGE_RS21890 5f6e669c755805fd86fc13c8d01d2423 222 PANTHER PTHR20935 1 128 4.7E-14 T 26-04-2016 RGE_RS21890 5f6e669c755805fd86fc13c8d01d2423 222 PANTHER PTHR20935 149 220 4.7E-14 T 26-04-2016 RGE_RS01445 163ee017c6661e459f898643451653f9 294 Pfam PF02653 Branched-chain amino acid transport system / permease component 16 282 1.1E-42 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS01445 163ee017c6661e459f898643451653f9 294 PANTHER PTHR11795:SF379 1 293 1.1E-120 T 26-04-2016 RGE_RS01445 163ee017c6661e459f898643451653f9 294 PANTHER PTHR11795 1 293 1.1E-120 T 26-04-2016 RGE_RS06765 4aa6acc1ef7b901f0ef2e9233604b57e 198 Pfam PF04991 LicD family 25 64 1.2E-11 T 26-04-2016 IPR007074 LicD family RGE_RS06765 4aa6acc1ef7b901f0ef2e9233604b57e 198 PANTHER PTHR13627 13 186 2.2E-15 T 26-04-2016 RGE_RS05235 15614644081c8c3a6ac6fe810b9c37fb 315 SUPERFAMILY SSF109998 37 172 7.06E-16 T 26-04-2016 IPR027304 Trigger factor/SurA domain RGE_RS05235 15614644081c8c3a6ac6fe810b9c37fb 315 Pfam PF13145 PPIC-type PPIASE domain 126 245 1.1E-9 T 26-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 RGE_RS05235 15614644081c8c3a6ac6fe810b9c37fb 315 TIGRFAM TIGR02925 cis_trans_EpsD: peptidyl-prolyl cis-trans isomerase, EpsD family 19 241 1.2E-66 T 26-04-2016 IPR014274 Peptidyl-prolyl cis-trans isomerase, EpsD-type RGE_RS05235 15614644081c8c3a6ac6fe810b9c37fb 315 Pfam PF13624 SurA N-terminal domain 17 102 7.6E-8 T 26-04-2016 RGE_RS18795 c3906dde6b07f6f63bf4ea2d230815f2 281 Pfam PF13020 Domain of unknown function (DUF3883) 163 260 1.4E-19 T 26-04-2016 IPR024975 Domain of unknown function DUF3883 RGE_RS13490 d2282ca01d56a82467d9f5d7c59a2baa 104 Pfam PF04024 PspC domain 46 101 4.1E-18 T 26-04-2016 IPR007168 Phage shock protein, PspC, N-terminal RGE_RS13490 d2282ca01d56a82467d9f5d7c59a2baa 104 Pfam PF09851 Short C-terminal domain 5 32 2.1E-9 T 26-04-2016 IPR018649 SHOCT domain RGE_RS13490 d2282ca01d56a82467d9f5d7c59a2baa 104 PANTHER PTHR33885 1 103 3.8E-19 T 26-04-2016 RGE_RS16830 c950454eb846ea5a3a960df37dcb6013 130 Pfam PF16068 Domain of unknown function (DUF4810) 27 111 1.2E-30 T 26-04-2016 IPR014508 Uncharacterised conserved protein withTPR-like repeats RGE_RS16830 c950454eb846ea5a3a960df37dcb6013 130 PIRSF PIRSF020555 1 121 4.1E-33 T 26-04-2016 IPR014508 Uncharacterised conserved protein withTPR-like repeats RGE_RS12605 0ab99b2d32c43113a712644a2ce9005b 286 SUPERFAMILY SSF55166 154 274 1.05E-21 T 26-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RGE_RS12605 0ab99b2d32c43113a712644a2ce9005b 286 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 208 273 4.1E-12 T 26-04-2016 RGE_RS12605 0ab99b2d32c43113a712644a2ce9005b 286 Gene3D G3DSA:3.30.1380.10 164 227 1.5E-5 T 26-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RGE_RS21560 e766d88dd2bfe277a6ef801bac9d243b 358 SUPERFAMILY SSF143865 13 285 3.01E-14 T 26-04-2016 RGE_RS21560 e766d88dd2bfe277a6ef801bac9d243b 358 Pfam PF01544 CorA-like Mg2+ transporter protein 115 351 9.5E-41 T 26-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RGE_RS21560 e766d88dd2bfe277a6ef801bac9d243b 358 Gene3D G3DSA:1.20.58.340 278 353 5.6E-25 T 26-04-2016 RGE_RS21560 e766d88dd2bfe277a6ef801bac9d243b 358 SUPERFAMILY SSF144083 288 351 4.58E-19 T 26-04-2016 RGE_RS21560 e766d88dd2bfe277a6ef801bac9d243b 358 PANTHER PTHR21535 78 358 9.3E-23 T 26-04-2016 RGE_RS04615 ba400b6bb235f008c52bd69f990c9444 291 Gene3D G3DSA:3.30.2010.10 78 161 4.9E-29 T 26-04-2016 RGE_RS04615 ba400b6bb235f008c52bd69f990c9444 291 Pfam PF01435 Peptidase family M48 82 289 2.6E-40 T 26-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RGE_RS04615 ba400b6bb235f008c52bd69f990c9444 291 PANTHER PTHR10120 1 289 2.0E-88 T 26-04-2016 RGE_RS04615 ba400b6bb235f008c52bd69f990c9444 291 PANTHER PTHR10120:SF19 1 289 2.0E-88 T 26-04-2016 RGE_RS04615 ba400b6bb235f008c52bd69f990c9444 291 Hamap MF_00188 Protease HtpX [htpX]. 1 290 25.267 T 26-04-2016 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 RGE_RS03470 6741ed2b8eee0c3b3e8cd82f44789325 64 SUPERFAMILY SSF52172 1 60 1.66E-5 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS03470 6741ed2b8eee0c3b3e8cd82f44789325 64 Gene3D G3DSA:3.40.50.2300 1 59 9.9E-4 T 26-04-2016 RGE_RS03585 03d82fedeb81fb9a1dafd4f80807453f 139 Gene3D G3DSA:3.40.630.30 8 130 1.6E-19 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS03585 03d82fedeb81fb9a1dafd4f80807453f 139 SUPERFAMILY SSF55729 10 134 2.66E-20 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS03585 03d82fedeb81fb9a1dafd4f80807453f 139 Pfam PF00583 Acetyltransferase (GNAT) family 68 125 8.5E-11 T 26-04-2016 IPR000182 GNAT domain GO:0008080 RGE_RS05255 50ddfd97009ac28853bc005d7846e2aa 294 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 27 280 6.2E-61 T 26-04-2016 IPR019127 Exosortase EpsH-related KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RGE_RS05255 50ddfd97009ac28853bc005d7846e2aa 294 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 190 282 2.2E-18 T 26-04-2016 IPR026392 Exosortase/Archaeosortase domain RGE_RS05255 50ddfd97009ac28853bc005d7846e2aa 294 TIGRFAM TIGR02602 8TM_EpsH: exosortase 44 281 1.2E-42 T 26-04-2016 IPR013426 Exosortase, EpsH RGE_RS05255 50ddfd97009ac28853bc005d7846e2aa 294 TIGRFAM TIGR03113 exosortase_2: exosortase B 26 286 7.2E-110 T 26-04-2016 IPR017544 Exosortase 2 RGE_RS21760 ce57a7ae533e8654a4d24c83194e2915 260 SUPERFAMILY SSF53335 36 143 5.73E-10 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS21760 ce57a7ae533e8654a4d24c83194e2915 260 Gene3D G3DSA:3.40.50.150 49 145 7.9E-7 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS10105 d9ead8ccd1cab28ea968f8d9fb3fb6a3 30 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 8 29 2.2E-10 T 26-04-2016 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 RGE_RS10105 d9ead8ccd1cab28ea968f8d9fb3fb6a3 30 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 6 29 1.6E-10 T 26-04-2016 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 RGE_RS03120 bbfd33a683eb0d93b6ac19b5903372e3 156 Gene3D G3DSA:3.40.630.30 12 136 2.2E-4 T 26-04-2016 IPR016181 Acyl-CoA N-acyltransferase RGE_RS16685 2dbc9fcecf8a3d8f6b2e13dbce96a504 547 PANTHER PTHR35369:SF2 465 547 1.1E-65 T 26-04-2016 RGE_RS16685 2dbc9fcecf8a3d8f6b2e13dbce96a504 547 PANTHER PTHR35369:SF2 1 423 1.1E-65 T 26-04-2016 RGE_RS16685 2dbc9fcecf8a3d8f6b2e13dbce96a504 547 PANTHER PTHR35369 465 547 1.1E-65 T 26-04-2016 RGE_RS16685 2dbc9fcecf8a3d8f6b2e13dbce96a504 547 PANTHER PTHR35369 1 423 1.1E-65 T 26-04-2016 RGE_RS16685 2dbc9fcecf8a3d8f6b2e13dbce96a504 547 SUPERFAMILY SSF56672 18 231 7.12E-28 T 26-04-2016 RGE_RS08070 6ce52eebbacfb5a6f8a0e048b6c344f3 301 Pfam PF08401 Domain of unknown function (DUF1738) 9 131 4.3E-35 T 26-04-2016 IPR013610 Domain of unknown function DUF1738 RGE_RS08070 6ce52eebbacfb5a6f8a0e048b6c344f3 301 PIRSF PIRSF037112 1 300 6.7E-108 T 26-04-2016 IPR017113 Antirestriction, ArdC RGE_RS21380 6787efb8c93c797b401d0d70a0d1ddf7 402 Pfam PF12704 MacB-like periplasmic core domain 20 241 1.4E-38 T 26-04-2016 IPR025857 MacB-like periplasmic core domain RGE_RS21380 6787efb8c93c797b401d0d70a0d1ddf7 402 Pfam PF02687 FtsX-like permease family 283 395 8.1E-21 T 26-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RGE_RS21380 6787efb8c93c797b401d0d70a0d1ddf7 402 PANTHER PTHR30572:SF9 1 402 2.9E-145 T 26-04-2016 RGE_RS21380 6787efb8c93c797b401d0d70a0d1ddf7 402 PANTHER PTHR30572 1 402 2.9E-145 T 26-04-2016 RGE_RS07755 665999098903a6512ddbf7b00c83fb10 172 Pfam PF07589 PEP-CTERM motif 145 169 1.4E-5 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS07755 665999098903a6512ddbf7b00c83fb10 172 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 146 169 3.0E-5 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS22120 946be6810860ee0c88ff7fe41e204c99 122 SUPERFAMILY SSF53933 24 116 2.83E-34 T 26-04-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 RGE_RS22120 946be6810860ee0c88ff7fe41e204c99 122 Pfam PF00545 ribonuclease 31 114 1.2E-28 T 26-04-2016 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 RGE_RS22120 946be6810860ee0c88ff7fe41e204c99 122 Gene3D G3DSA:3.10.450.30 25 118 2.2E-40 T 26-04-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 RGE_RS00245 c2e29859fe1fe6d3538db5268aae14bb 391 Pfam PF12679 ABC-2 family transporter protein 9 378 2.3E-21 T 26-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 RGE_RS00245 c2e29859fe1fe6d3538db5268aae14bb 391 PANTHER PTHR30294 1 386 6.0E-16 T 26-04-2016 RGE_RS12860 4c65cfe2c0ff7439b7862a7bda8e6f13 385 Pfam PF11379 Protein of unknown function (DUF3182) 33 377 6.1E-145 T 26-04-2016 IPR021519 Protein of unknown function DUF3182 RGE_RS06545 234f3fa04c30ea324ecbe3d08c007d64 106 Pfam PF12112 Protein of unknown function (DUF3579) 10 98 4.1E-38 T 26-04-2016 IPR021969 Protein of unknown function DUF3579 RGE_RS11355 0224ceca231187ca4764009d4afd1f28 180 SUPERFAMILY SSF48452 58 155 1.52E-6 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS11355 0224ceca231187ca4764009d4afd1f28 180 Gene3D G3DSA:1.25.40.10 61 145 2.6E-4 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS03515 5ac8f25f8ea72b49e56bcad241ac9906 609 SUPERFAMILY SSF53300 420 593 2.23E-17 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS03515 5ac8f25f8ea72b49e56bcad241ac9906 609 PANTHER PTHR41248:SF1 1 609 1.9E-95 T 26-04-2016 RGE_RS03515 5ac8f25f8ea72b49e56bcad241ac9906 609 Gene3D G3DSA:3.40.50.410 494 571 1.8E-8 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS03515 5ac8f25f8ea72b49e56bcad241ac9906 609 PANTHER PTHR41248 1 609 1.9E-95 T 26-04-2016 RGE_RS03515 5ac8f25f8ea72b49e56bcad241ac9906 609 SMART SM00327 417 600 7.1E-11 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS03515 5ac8f25f8ea72b49e56bcad241ac9906 609 Pfam PF00092 von Willebrand factor type A domain 498 573 1.5E-5 T 26-04-2016 IPR002035 von Willebrand factor, type A RGE_RS03520 9e2034e04a56588ce9114ab67f109946 321 Pfam PF12801 4Fe-4S binding domain 184 212 1.6 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS03520 9e2034e04a56588ce9114ab67f109946 321 Pfam PF12801 4Fe-4S binding domain 74 116 1.0E-9 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS03710 09ef54ce255ae0284a8ae5a6e3310f64 240 Pfam PF10881 Protein of unknown function (DUF2726) 45 160 1.9E-12 T 26-04-2016 IPR024402 Domain of unknown function DUF2726 RGE_RS09930 e1a4f82c65280912e4878884dfaf6ed0 206 SUPERFAMILY SSF109604 6 199 2.62E-35 T 26-04-2016 RGE_RS09930 e1a4f82c65280912e4878884dfaf6ed0 206 Gene3D G3DSA:1.10.3210.10 3 202 7.4E-48 T 26-04-2016 IPR006674 HD domain RGE_RS06865 22806278c77a774cb3eb01a36dc46e6e 259 Pfam PF09955 Predicted integral membrane protein (DUF2189) 73 192 4.7E-34 T 26-04-2016 IPR018692 Predicted integral membrane protein DUF2189 RGE_RS05260 646f020f77933af7e715c24283576eb3 230 TIGRFAM TIGR02914 EpsI_fam: EpsI family protein 45 222 2.3E-47 T 26-04-2016 IPR014263 Methanolan biosynthesis EpsI RGE_RS05260 646f020f77933af7e715c24283576eb3 230 Pfam PF11984 Protein of unknown function (DUF3485) 11 217 7.1E-52 T 26-04-2016 IPR014263 Methanolan biosynthesis EpsI RGE_RS18915 57d87d658a49543f881b93556a057ec4 128 Gene3D G3DSA:3.10.180.10 3 123 6.8E-25 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS18915 57d87d658a49543f881b93556a057ec4 128 SUPERFAMILY SSF54593 4 124 1.75E-20 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS06345 fd07c16c65ca5828312db3ea5934ddb9 125 Gene3D G3DSA:3.10.180.10 8 121 2.2E-24 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS06345 fd07c16c65ca5828312db3ea5934ddb9 125 SUPERFAMILY SSF54593 11 118 2.42E-21 T 26-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RGE_RS06345 fd07c16c65ca5828312db3ea5934ddb9 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 114 1.2E-9 T 26-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RGE_RS16250 54afb2e32c427533d93ef5c5d289697e 243 SUPERFAMILY SSF52172 3 100 8.4E-12 T 26-04-2016 IPR011006 CheY-like superfamily RGE_RS16250 54afb2e32c427533d93ef5c5d289697e 243 Pfam PF00072 Response regulator receiver domain 5 98 8.7E-7 T 26-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RGE_RS16250 54afb2e32c427533d93ef5c5d289697e 243 Gene3D G3DSA:3.40.50.2300 3 111 1.9E-11 T 26-04-2016 RGE_RS16250 54afb2e32c427533d93ef5c5d289697e 243 PANTHER PTHR26402 3 90 2.1E-12 T 26-04-2016 RGE_RS13565 b1fdfacf0cfa7107772464e892d14bf0 691 Pfam PF05650 Domain of unknown function (DUF802) 320 372 2.2E-11 T 26-04-2016 IPR008520 Domain of unknown function DUF802 RGE_RS10955 fa5d37cccbcf04936d0150c4cd2ad9bb 147 SUPERFAMILY SSF159888 46 110 5.89E-11 T 26-04-2016 RGE_RS10955 fa5d37cccbcf04936d0150c4cd2ad9bb 147 Pfam PF08818 Domain of unknown function (DU1801) 54 141 3.2E-6 T 26-04-2016 IPR014922 Domain of unknown function DUF1801 RGE_RS19735 a61662011617093f7302802e1ff2653a 271 Pfam PF01493 GXGXG motif 85 210 3.2E-11 T 26-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RGE_RS19735 a61662011617093f7302802e1ff2653a 271 Gene3D G3DSA:2.160.20.60 42 214 2.8E-34 T 26-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RGE_RS19735 a61662011617093f7302802e1ff2653a 271 TIGRFAM TIGR03122 one_C_dehyd_C: formylmethanofuran dehydrogenase subunit C 5 266 5.8E-63 T 26-04-2016 IPR017550 Formylmethanofuran dehydrogenase subunit C GO:0015948|GO:0018493|GO:0046914|GO:0055114 KEGG: 00680+1.2.99.5|MetaCyc: PWY-5209|UniPathway: UPA00640 RGE_RS19735 a61662011617093f7302802e1ff2653a 271 SUPERFAMILY SSF69336 42 241 1.31E-38 T 26-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RGE_RS19735 a61662011617093f7302802e1ff2653a 271 PANTHER PTHR39673 2 269 6.7E-36 T 26-04-2016 RGE_RS14255 6c40bfbe8e7ee44ae7685dd52ad7070d 99 Pfam PF00460 Flagella basal body rod protein 9 35 2.2E-8 T 26-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RGE_RS20390 0194041f18597a830783019a5daa027a 70 Pfam PF11174 Protein of unknown function (DUF2970) 10 64 5.9E-21 T 26-04-2016 IPR021344 Protein of unknown function DUF2970 RGE_RS07890 f8533cb208f13d4c1d3ac13757cc5ca4 140 SUPERFAMILY SSF54637 11 139 1.91E-32 T 26-04-2016 IPR029069 HotDog domain RGE_RS07890 f8533cb208f13d4c1d3ac13757cc5ca4 140 Pfam PF13279 Thioesterase-like superfamily 20 136 9.2E-13 T 26-04-2016 RGE_RS07890 f8533cb208f13d4c1d3ac13757cc5ca4 140 PANTHER PTHR31793 2 139 1.3E-27 T 26-04-2016 RGE_RS07890 f8533cb208f13d4c1d3ac13757cc5ca4 140 Gene3D G3DSA:3.10.129.10 8 139 2.8E-37 T 26-04-2016 IPR029069 HotDog domain RGE_RS13910 58efe536a8f031e285436a907a8b55ce 61 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 51 16.578 T 26-04-2016 IPR009760 Protein of unknown function DUF1328 GO:0005886 RGE_RS13910 58efe536a8f031e285436a907a8b55ce 61 Pfam PF07043 Protein of unknown function (DUF1328) 6 43 5.8E-12 T 26-04-2016 IPR009760 Protein of unknown function DUF1328 GO:0005886 RGE_RS13910 58efe536a8f031e285436a907a8b55ce 61 PIRSF PIRSF036466 1 55 2.3E-17 T 26-04-2016 IPR009760 Protein of unknown function DUF1328 GO:0005886 RGE_RS07980 656a2100f536c8be5a1030abc594d66e 157 Gene3D G3DSA:3.30.1150.10 86 147 1.2E-4 T 26-04-2016 RGE_RS14545 be780b9e2eb2d0915e7b309852acfe8e 249 Pfam PF05598 Transposase domain (DUF772) 56 123 5.5E-15 T 26-04-2016 IPR008490 Transposase InsH, N-terminal RGE_RS12815 c12707230b4be2bd9d2af3e0028b0ead 72 Pfam PF05433 Glycine zipper 2TM domain 31 66 4.5E-8 T 26-04-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 RGE_RS21505 baf7c832295ad479a9f7e388320f299f 225 Pfam PF13852 Protein of unknown function (DUF4197) 26 223 5.4E-69 T 26-04-2016 IPR025245 Protein of unknown function DUF4197 RGE_RS08250 275e91c63d6e55a2d16f29d8469fba96 151 Pfam PF02050 Flagellar FliJ protein 17 138 1.2E-22 T 26-04-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 RGE_RS08250 275e91c63d6e55a2d16f29d8469fba96 151 PANTHER PTHR38786 1 147 3.1E-17 T 26-04-2016 RGE_RS08250 275e91c63d6e55a2d16f29d8469fba96 151 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 4 138 1.8E-19 T 26-04-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 RGE_RS19605 3d34dfb150f22207c4c5195a49a52d8f 153 Pfam PF10543 ORF6N domain 14 101 8.9E-32 T 26-04-2016 IPR018873 KilA-N, DNA-binding domain RGE_RS19045 7a5bad7289b8649942478962b44845d4 460 Pfam PF14341 PilX N-terminal 15 65 2.6E-6 T 26-04-2016 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain RGE_RS15240 acb57218441fb9adbe193a83b02d6507 367 Pfam PF07759 Protein of unknown function (DUF1615) 45 362 1.7E-130 T 26-04-2016 IPR011673 Protein of unknown function DUF1615 RGE_RS15240 acb57218441fb9adbe193a83b02d6507 367 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 16 362 2.0E-79 T 26-04-2016 IPR011673 Protein of unknown function DUF1615 RGE_RS03370 12d3ae090a85b640c26cdcb8777bbc6e 99 TIGRFAM TIGR01873 cas_CT1978: CRISPR-associated endoribonuclease Cas2, subtype I-E/ECOLI 1 86 1.4E-33 T 26-04-2016 IPR010152 CRISPR-associated protein Cas2 subtype RGE_RS03370 12d3ae090a85b640c26cdcb8777bbc6e 99 Pfam PF09707 CRISPR-associated protein (Cas_Cas2CT1978) 1 86 5.7E-37 T 26-04-2016 IPR010152 CRISPR-associated protein Cas2 subtype RGE_RS15570 dc0a044f6fd64b186a180218efba10ba 140 Gene3D G3DSA:3.40.50.720 77 134 4.4E-4 T 26-04-2016 IPR016040 NAD(P)-binding domain RGE_RS15570 dc0a044f6fd64b186a180218efba10ba 140 PANTHER PTHR30558 1 139 3.5E-26 T 26-04-2016 RGE_RS15570 dc0a044f6fd64b186a180218efba10ba 140 Pfam PF02472 Biopolymer transport protein ExbD/TolR 7 134 2.8E-27 T 26-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RGE_RS15570 dc0a044f6fd64b186a180218efba10ba 140 PANTHER PTHR30558:SF5 1 139 3.5E-26 T 26-04-2016 RGE_RS02340 0e3690c6337bdc956e5d2da58c3f4b04 93 Pfam PF04193 PQ loop repeat 5 60 3.4E-10 T 26-04-2016 IPR006603 PQ-loop repeat RGE_RS04730 70e71715b5ec8902ef02f0cf47b9caa9 178 Pfam PF13689 Domain of unknown function (DUF4154) 40 173 7.6E-34 T 26-04-2016 IPR025293 Protein of unknown function DUF4154 RGE_RS06275 21b98076bf74380c7c888b76702b3c2f 242 PANTHER PTHR11085 5 239 1.1E-66 T 26-04-2016 IPR003000 Sirtuin family GO:0070403 RGE_RS06275 21b98076bf74380c7c888b76702b3c2f 242 Pfam PF02146 Sir2 family 16 193 5.5E-43 T 26-04-2016 IPR003000 Sirtuin family GO:0070403 RGE_RS06275 21b98076bf74380c7c888b76702b3c2f 242 Gene3D G3DSA:3.30.1600.10 117 163 2.1E-19 T 26-04-2016 IPR026591 Sirtuin family, catalytic core small domain RGE_RS06275 21b98076bf74380c7c888b76702b3c2f 242 Gene3D G3DSA:3.30.1600.10 26 64 2.1E-19 T 26-04-2016 IPR026591 Sirtuin family, catalytic core small domain RGE_RS06275 21b98076bf74380c7c888b76702b3c2f 242 SUPERFAMILY SSF52467 5 240 1.38E-69 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS06275 21b98076bf74380c7c888b76702b3c2f 242 Gene3D G3DSA:3.40.50.1220 5 24 1.6E-37 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS06275 21b98076bf74380c7c888b76702b3c2f 242 Gene3D G3DSA:3.40.50.1220 72 116 1.6E-37 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS06275 21b98076bf74380c7c888b76702b3c2f 242 Gene3D G3DSA:3.40.50.1220 172 238 1.6E-37 T 26-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RGE_RS11940 9221a69c00b5c3ede72602a2d240b8a4 357 SUPERFAMILY SSF52151 40 102 5.75E-15 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS11940 9221a69c00b5c3ede72602a2d240b8a4 357 SUPERFAMILY SSF52151 157 341 5.75E-15 T 26-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RGE_RS09585 519a34647b31c478ca9edda017c63271 145 Pfam PF02050 Flagellar FliJ protein 25 138 7.2E-7 T 26-04-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 RGE_RS06420 69e2d27f121b4ca5b6a789dbf05d6369 281 PANTHER PTHR30622 1 281 2.1E-32 T 26-04-2016 RGE_RS06420 69e2d27f121b4ca5b6a789dbf05d6369 281 Pfam PF02673 Bacitracin resistance protein BacA 7 274 1.7E-46 T 26-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RGE_RS18130 5f774137b4d651b2a64f129a3fd44a3e 257 Pfam PF03692 Putative zinc- or iron-chelating domain 70 160 5.5E-6 T 26-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein RGE_RS19415 5b5b268a3a19c5bdc38e767073c9f658 125 Pfam PF11142 Protein of unknown function (DUF2917) 30 87 3.6E-14 T 26-04-2016 IPR021317 Protein of unknown function DUF2917 RGE_RS09630 51dafb80b2e80441a21856ec19972a7e 97 SUPERFAMILY SSF101498 55 92 1.29E-7 T 26-04-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 RGE_RS09630 51dafb80b2e80441a21856ec19972a7e 97 Pfam PF04316 Anti-sigma-28 factor, FlgM 49 90 7.1E-8 T 26-04-2016 IPR031316 Anti-sigma-28 factor FlgM, C-terminal RGE_RS09630 51dafb80b2e80441a21856ec19972a7e 97 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 6 93 6.1E-15 T 26-04-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 RGE_RS17235 180a35b7d64cee0c8f04f5bea69de22d 147 SUPERFAMILY SSF54534 3 146 2.36E-30 T 26-04-2016 RGE_RS17235 180a35b7d64cee0c8f04f5bea69de22d 147 Gene3D G3DSA:3.10.50.40 133 146 5.3E-15 T 26-04-2016 RGE_RS17235 180a35b7d64cee0c8f04f5bea69de22d 147 Gene3D G3DSA:3.10.50.40 3 81 5.3E-15 T 26-04-2016 RGE_RS17235 180a35b7d64cee0c8f04f5bea69de22d 147 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 3 74 1.2E-10 T 26-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RGE_RS06480 0491511d2a56b6c5fd1e4d57c93eadf0 199 Gene3D G3DSA:3.40.390.10 53 131 2.5E-5 T 26-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RGE_RS06480 0491511d2a56b6c5fd1e4d57c93eadf0 199 SUPERFAMILY SSF55486 60 129 1.9E-6 T 26-04-2016 RGE_RS08885 bcc29d159f105b589013e42f9476e8ac 231 SUPERFAMILY SSF69318 25 205 6.54E-10 T 26-04-2016 RGE_RS13575 1017979ae316720768346a5d05ea2d44 195 Pfam PF11445 Protein of unknown function (DUF2894) 18 175 8.6E-24 T 26-04-2016 IPR021549 Protein of unknown function DUF2894 RGE_RS22585 d8988e803ea2047ffa5df90e68770bc4 71 Pfam PF11127 Protein of unknown function (DUF2892) 2 61 2.9E-11 T 26-04-2016 IPR021309 Protein of unknown function DUF2892 RGE_RS14135 93cd9e3f42ff766380e6b218af0d6178 205 SUPERFAMILY SSF101327 19 176 5.1E-21 T 26-04-2016 IPR011978 Uncharacterised protein family UPF0149 RGE_RS14135 93cd9e3f42ff766380e6b218af0d6178 205 Pfam PF03695 Uncharacterised protein family (UPF0149) 21 201 4.0E-27 T 26-04-2016 IPR011978 Uncharacterised protein family UPF0149 RGE_RS14135 93cd9e3f42ff766380e6b218af0d6178 205 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 19 201 3.4E-36 T 26-04-2016 IPR011978 Uncharacterised protein family UPF0149 RGE_RS13995 6a5e4cadc42ca1e461d31413c6a13333 544 Pfam PF12770 CHAT domain 252 517 6.8E-16 T 26-04-2016 IPR024983 CHAT domain RGE_RS09890 6a2548cfb8cf190410d5b3bed771394c 111 SUPERFAMILY SSF81296 13 105 2.24E-21 T 26-04-2016 IPR014756 Immunoglobulin E-set RGE_RS09890 6a2548cfb8cf190410d5b3bed771394c 111 Pfam PF08770 Sulphur oxidation protein SoxZ 15 100 1.4E-22 T 26-04-2016 IPR014880 Sulphur oxidation protein SoxZ RGE_RS09890 6a2548cfb8cf190410d5b3bed771394c 111 Gene3D G3DSA:2.60.40.10 15 106 5.9E-23 T 26-04-2016 IPR013783 Immunoglobulin-like fold RGE_RS05920 87747b888175fb01c7401a556715784f 283 Gene3D G3DSA:3.90.550.10 5 232 1.3E-33 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS05920 87747b888175fb01c7401a556715784f 283 PANTHER PTHR22916 1 283 7.3E-36 T 26-04-2016 RGE_RS05920 87747b888175fb01c7401a556715784f 283 Pfam PF00535 Glycosyl transferase family 2 9 163 5.4E-17 T 26-04-2016 IPR001173 Glycosyltransferase 2-like RGE_RS05920 87747b888175fb01c7401a556715784f 283 SUPERFAMILY SSF53448 3 233 1.0E-39 T 26-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RGE_RS10720 e922079e3c97686dfe20d3bee96b0566 134 Pfam PF05901 Excalibur calcium-binding domain 96 129 4.6E-12 T 26-04-2016 IPR008613 Excalibur calcium-binding domain RGE_RS03240 494df5668c14d2c0802eb1dcb17129a7 116 PANTHER PTHR13696:SF62 19 111 6.1E-13 T 26-04-2016 RGE_RS03240 494df5668c14d2c0802eb1dcb17129a7 116 SUPERFAMILY SSF117916 20 115 1.7E-22 T 26-04-2016 RGE_RS03240 494df5668c14d2c0802eb1dcb17129a7 116 Pfam PF01883 Domain of unknown function DUF59 22 86 1.3E-14 T 26-04-2016 IPR002744 Domain of unknown function DUF59 RGE_RS03240 494df5668c14d2c0802eb1dcb17129a7 116 PANTHER PTHR13696 19 111 6.1E-13 T 26-04-2016 RGE_RS12185 6bda03fb4f2400b21390f8e43057f47e 89 PANTHER PTHR33884 1 89 5.2E-20 T 26-04-2016 RGE_RS12185 6bda03fb4f2400b21390f8e43057f47e 89 Pfam PF04226 Transglycosylase associated protein 33 85 2.3E-11 T 26-04-2016 IPR007341 Transglycosylase-associated protein GO:0016021 RGE_RS19615 1a25328850a90797ae7b5d1ce5dcf283 77 Pfam PF07866 Protein of unknown function (DUF1653) 15 74 2.8E-26 T 26-04-2016 IPR023387 DUF1653-like domain RGE_RS19615 1a25328850a90797ae7b5d1ce5dcf283 77 Gene3D G3DSA:2.30.30.320 10 76 2.7E-27 T 26-04-2016 IPR023387 DUF1653-like domain RGE_RS18005 a287896bae54e2023d644e608b66c767 143 Pfam PF08897 Domain of unknown function (DUF1841) 6 139 1.5E-56 T 26-04-2016 IPR014993 Protein of unknown function DUF1841 RGE_RS10620 4db563352a60b2351ee1ade6817a0def 112 Gene3D G3DSA:3.40.30.10 9 108 4.6E-14 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS10620 4db563352a60b2351ee1ade6817a0def 112 SUPERFAMILY SSF52833 17 107 6.61E-16 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS10620 4db563352a60b2351ee1ade6817a0def 112 Pfam PF00085 Thioredoxin 16 102 1.3E-9 T 26-04-2016 IPR013766 Thioredoxin domain GO:0045454 RGE_RS01010 342d2bcc8732dbe84d11a8ed4405e6dc 85 Pfam PF12091 Protein of unknown function (DUF3567) 1 85 6.7E-31 T 26-04-2016 IPR021951 Protein of unknown function DUF3567 RGE_RS07740 ce89b5eacb1040e0cb9c3da2d7e6cf0b 124 Pfam PF09842 Predicted membrane protein (DUF2069) 17 116 9.2E-28 T 26-04-2016 IPR018643 Protein of unknown function DUF2069, membrane RGE_RS04750 7960f61fe718cdddae280340109c86d6 325 SUPERFAMILY SSF53850 91 277 8.53E-10 T 26-04-2016 RGE_RS04750 7960f61fe718cdddae280340109c86d6 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 50 320 3.6E-60 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS04750 7960f61fe718cdddae280340109c86d6 325 PANTHER PTHR30349 1 277 2.1E-65 T 26-04-2016 RGE_RS04750 7960f61fe718cdddae280340109c86d6 325 PIRSF PIRSF017082 1 324 6.7E-70 T 26-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RGE_RS04750 7960f61fe718cdddae280340109c86d6 325 PANTHER PTHR30349:SF1 1 277 2.1E-65 T 26-04-2016 RGE_RS08485 6c8ffa5cf612416df6b811ff64c31e89 497 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 68 228 2.0E-23 T 26-04-2016 RGE_RS08485 6c8ffa5cf612416df6b811ff64c31e89 497 PANTHER PTHR33908 9 449 1.8E-17 T 26-04-2016 RGE_RS16880 c95ddf6408a04ff58432f6ada447caf7 320 PANTHER PTHR34595 1 316 1.5E-99 T 26-04-2016 RGE_RS16880 c95ddf6408a04ff58432f6ada447caf7 320 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 315 1.3E-105 T 26-04-2016 IPR007296 Domain of unknown function DUF403 RGE_RS22065 7650cd81821ae832f56dbb435b91a39d 140 Pfam PF02472 Biopolymer transport protein ExbD/TolR 16 136 3.6E-28 T 26-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RGE_RS22065 7650cd81821ae832f56dbb435b91a39d 140 PANTHER PTHR30558 14 140 3.6E-35 T 26-04-2016 RGE_RS04720 ef8ad2e9fc1ac9599107326d4e0dc420 265 Pfam PF01435 Peptidase family M48 118 239 9.3E-7 T 26-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RGE_RS16455 1bdb7114902d312ce82256967d24d8ca 245 SUPERFAMILY SSF48695 101 205 2.17E-11 T 26-04-2016 IPR011031 Multihaem cytochrome RGE_RS16455 1bdb7114902d312ce82256967d24d8ca 245 Gene3D G3DSA:1.10.3820.10 102 207 3.2E-10 T 26-04-2016 RGE_RS16445 9074486f4af54476d47d83ddcc370640 408 Pfam PF03916 Polysulphide reductase, NrfD 49 335 1.2E-59 T 26-04-2016 IPR005614 NrfD family RGE_RS16445 9074486f4af54476d47d83ddcc370640 408 PANTHER PTHR34856 11 404 1.1E-75 T 26-04-2016 RGE_RS16445 9074486f4af54476d47d83ddcc370640 408 PANTHER PTHR34856:SF3 11 404 1.1E-75 T 26-04-2016 RGE_RS01770 26a28c2d2ea842992d308d128c09096f 419 Gene3D G3DSA:2.40.160.10 71 313 1.9E-4 T 26-04-2016 IPR023614 Porin domain RGE_RS19185 dd5fe8daaefe33ca7be77703d96e6d0c 140 Gene3D G3DSA:1.10.3680.10 1 116 1.1E-6 T 26-04-2016 IPR029024 TerB-like RGE_RS19185 dd5fe8daaefe33ca7be77703d96e6d0c 140 SUPERFAMILY SSF158682 2 118 1.96E-9 T 26-04-2016 IPR029024 TerB-like RGE_RS08800 c364456c85a12513cc2c55fa667392e4 434 Gene3D G3DSA:3.40.50.300 32 129 9.2E-5 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08800 c364456c85a12513cc2c55fa667392e4 434 Pfam PF10923 P-loop Domain of unknown function (DUF2791) 5 405 3.8E-159 T 26-04-2016 IPR021228 Protein of unknown function DUF2791 RGE_RS08800 c364456c85a12513cc2c55fa667392e4 434 SUPERFAMILY SSF52540 237 300 3.72E-5 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08800 c364456c85a12513cc2c55fa667392e4 434 SUPERFAMILY SSF52540 32 120 3.72E-5 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS18055 bf260940889ff9a95f87737416f09f91 1433 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1048 1391 7.4E-56 T 26-04-2016 IPR007452 Translocation and assembly module TamB RGE_RS18055 bf260940889ff9a95f87737416f09f91 1433 PANTHER PTHR36985 245 730 6.5E-49 T 26-04-2016 RGE_RS18055 bf260940889ff9a95f87737416f09f91 1433 PANTHER PTHR36985 1 229 6.5E-49 T 26-04-2016 RGE_RS18055 bf260940889ff9a95f87737416f09f91 1433 PANTHER PTHR36985 748 1393 6.5E-49 T 26-04-2016 RGE_RS06250 bcb9472213adfc1d95aa83fb04156d6d 72 Pfam PF11278 Protein of unknown function (DUF3079) 3 52 3.9E-31 T 26-04-2016 IPR021430 Protein of unknown function DUF3079 RGE_RS03025 a350ec6277277901c76d315d7657f52d 196 Pfam PF14103 Domain of unknown function (DUF4276) 7 186 4.8E-13 T 26-04-2016 IPR025455 Protein of unknown function DUF4276 RGE_RS17405 b8e11b1024cd0aae0af311804b2447a2 84 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 56 81 2.1E-5 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS18385 46015eb2d5dcc60af79fb6720b91aabf 181 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 155 179 1.7E-5 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS18385 46015eb2d5dcc60af79fb6720b91aabf 181 Pfam PF07589 PEP-CTERM motif 154 179 4.2E-5 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS10175 c995031acd41d9c91431fc1486d9a342 125 Pfam PF13467 Ribbon-helix-helix domain 16 82 1.2E-24 T 26-04-2016 IPR027373 Ribbon-helix-helix domain RGE_RS15555 a7aabf349279a9a2229b38e3b999e3d9 158 PANTHER PTHR37953:SF1 1 158 2.7E-27 T 26-04-2016 RGE_RS15555 a7aabf349279a9a2229b38e3b999e3d9 158 PANTHER PTHR37953 1 158 2.7E-27 T 26-04-2016 RGE_RS15555 a7aabf349279a9a2229b38e3b999e3d9 158 Pfam PF02643 Uncharacterized ACR, COG1430 50 151 3.7E-30 T 26-04-2016 IPR003795 Protein of unknown function DUF192 RGE_RS08775 fe07f63cf9764b181a458d68bd8cf80a 1220 Gene3D G3DSA:3.40.50.300 25 167 1.6E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08775 fe07f63cf9764b181a458d68bd8cf80a 1220 Gene3D G3DSA:3.40.50.300 745 790 1.6E-4 T 26-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RGE_RS08775 fe07f63cf9764b181a458d68bd8cf80a 1220 Pfam PF12128 Protein of unknown function (DUF3584) 9 1194 4.9E-155 T 26-04-2016 IPR021979 Protein of unknown function DUF3584 RGE_RS18490 dd17049690e694e23ac00bcc0ed926db 274 Pfam PF04250 Protein of unknown function (DUF429) 12 263 2.2E-9 T 26-04-2016 IPR007362 Protein of unknown function DUF429 RGE_RS06280 75039d47d01bc1575eecf2d064f42502 105 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 27 90 2.1E-10 T 26-04-2016 IPR018660 C-type lysozyme, inhibitor RGE_RS06280 75039d47d01bc1575eecf2d064f42502 105 SUPERFAMILY SSF141488 26 97 6.15E-12 T 26-04-2016 IPR018660 C-type lysozyme, inhibitor RGE_RS11855 66cd127279e112c84030ce9f92ac9373 412 Pfam PF02653 Branched-chain amino acid transport system / permease component 32 301 4.9E-23 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS11855 66cd127279e112c84030ce9f92ac9373 412 PANTHER PTHR30482 4 342 4.9E-50 T 26-04-2016 RGE_RS23035 3d405b2ccf16391e384bd3244466ab5b 126 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 99 123 3.5E-6 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS23035 3d405b2ccf16391e384bd3244466ab5b 126 Pfam PF07589 PEP-CTERM motif 98 123 6.6E-8 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS12475 56e986244f89db5d98ff9352df1cbe2c 392 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 2 77 5.2E-20 T 26-04-2016 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain RGE_RS12475 56e986244f89db5d98ff9352df1cbe2c 392 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 121 281 4.6E-41 T 26-04-2016 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal RGE_RS08690 bdb2404fe231a1d9af310e384d52e1a0 294 Gene3D G3DSA:1.25.40.10 136 234 1.7E-5 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS21925 3da2e9fca7589ee21e1a6c8958501f20 317 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 14 299 4.7E-35 T 26-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD RGE_RS21925 3da2e9fca7589ee21e1a6c8958501f20 317 PANTHER PTHR40277 5 304 1.3E-25 T 26-04-2016 RGE_RS15605 da9b47a73d76e9757c92ecf0ac269671 189 SUPERFAMILY SSF56935 19 170 2.88E-37 T 26-04-2016 RGE_RS15605 da9b47a73d76e9757c92ecf0ac269671 189 Gene3D G3DSA:2.170.130.10 38 161 3.4E-39 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS15605 da9b47a73d76e9757c92ecf0ac269671 189 PANTHER PTHR30069 10 162 1.1E-60 T 26-04-2016 RGE_RS15605 da9b47a73d76e9757c92ecf0ac269671 189 PANTHER PTHR30069:SF7 10 162 1.1E-60 T 26-04-2016 RGE_RS15605 da9b47a73d76e9757c92ecf0ac269671 189 Pfam PF07715 TonB-dependent Receptor Plug Domain 40 150 1.7E-26 T 26-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RGE_RS17375 b5bd76f85347ffdd0ecc8fb92386edea 119 Gene3D G3DSA:3.30.1330.60 20 103 1.8E-8 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS17375 b5bd76f85347ffdd0ecc8fb92386edea 119 SUPERFAMILY SSF103088 15 103 3.53E-9 T 26-04-2016 IPR006665 OmpA-like domain RGE_RS23390 bf9f00e11d3dae94c201e8c32ad0f0da 227 Gene3D G3DSA:3.40.50.150 37 213 5.3E-18 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS23390 bf9f00e11d3dae94c201e8c32ad0f0da 227 Pfam PF13649 Methyltransferase domain 45 132 1.1E-9 T 26-04-2016 RGE_RS23390 bf9f00e11d3dae94c201e8c32ad0f0da 227 SUPERFAMILY SSF53335 39 217 1.09E-20 T 26-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RGE_RS03480 a0d3bc043a0f2eae064a5c2127abfec8 428 PANTHER PTHR35334 18 427 2.2E-210 T 26-04-2016 RGE_RS03480 a0d3bc043a0f2eae064a5c2127abfec8 428 PANTHER PTHR35334:SF2 18 427 2.2E-210 T 26-04-2016 RGE_RS21840 a0d3dc7ef7bddb6dd194b83164a46632 205 Pfam PF01810 LysE type translocator 17 197 4.8E-23 T 26-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RGE_RS21840 a0d3dc7ef7bddb6dd194b83164a46632 205 PANTHER PTHR30086 3 205 4.2E-26 T 26-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RGE_RS23115 b7a9a6d1f3038144c5e8138411dc5a60 330 Pfam PF05212 Protein of unknown function (DUF707) 44 127 4.2E-7 T 26-04-2016 IPR007877 Protein of unknown function DUF707 RGE_RS06045 52d1d8509ecf042e57884673a97087af 839 Pfam PF01584 CheW-like domain 661 803 1.6E-6 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS06045 52d1d8509ecf042e57884673a97087af 839 Pfam PF02743 Cache domain 396 583 3.3E-12 T 26-04-2016 IPR033479 Double Cache domain 1 RGE_RS06045 52d1d8509ecf042e57884673a97087af 839 SUPERFAMILY SSF50341 655 782 9.29E-10 T 26-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RGE_RS09395 a43105dd92908619402673f002eb3918 376 Pfam PF03929 PepSY-associated TM region 10 361 1.7E-43 T 26-04-2016 IPR005625 PepSY-associated TM protein RGE_RS09395 a43105dd92908619402673f002eb3918 376 PANTHER PTHR34219 1 376 1.8E-49 T 26-04-2016 RGE_RS23100 011c89dfc7cdd1bf4bd7be1eb16f827e 177 SUPERFAMILY SSF48452 50 111 2.51E-7 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS23100 011c89dfc7cdd1bf4bd7be1eb16f827e 177 Gene3D G3DSA:1.25.40.10 48 110 3.6E-7 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS23245 3c487c12b4a2a6426d01e2354257016e 328 Pfam PF11740 Plasmid replication region DNA-binding N-term 7 120 4.9E-27 T 26-04-2016 IPR021104 KfrA, N-terminal DNA-binding domain RGE_RS06080 5c673810688e6a024f850cf7e428703f 285 Pfam PF04338 Protein of unknown function, DUF481 52 271 2.3E-37 T 26-04-2016 IPR007433 Protein of unknown function DUF481 RGE_RS19385 1df3f3213e61818f07ee7c0a12568bb6 254 Pfam PF13391 HNH endonuclease 41 92 4.2E-4 T 26-04-2016 IPR003615 HNH nuclease RGE_RS23340 d35f3b4fb5c4dd69d9be7290b9a41be4 152 Pfam PF04138 GtrA-like protein 18 133 7.0E-18 T 26-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 RGE_RS13660 463ea2a354948997b792877a99fc0d12 278 PANTHER PTHR15362 21 163 8.2E-28 T 26-04-2016 RGE_RS13660 463ea2a354948997b792877a99fc0d12 278 Pfam PF01066 CDP-alcohol phosphatidyltransferase 29 93 1.0E-14 T 26-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RGE_RS13660 463ea2a354948997b792877a99fc0d12 278 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 71 93 - T 26-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RGE_RS13660 463ea2a354948997b792877a99fc0d12 278 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 36 166 1.6E-31 T 26-04-2016 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 RGE_RS06495 d08cdfac3bb598d5979095f791306989 108 Pfam PF03692 Putative zinc- or iron-chelating domain 3 94 9.2E-8 T 26-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein RGE_RS10950 dca6ce2dda1f94f1d1043a3b5222d4b1 136 SUPERFAMILY SSF51316 1 135 9.0E-43 T 26-04-2016 IPR011057 Mss4-like RGE_RS10950 dca6ce2dda1f94f1d1043a3b5222d4b1 136 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 115 6.9E-26 T 26-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RGE_RS10950 dca6ce2dda1f94f1d1043a3b5222d4b1 136 PANTHER PTHR33337 1 134 1.7E-29 T 26-04-2016 RGE_RS10950 dca6ce2dda1f94f1d1043a3b5222d4b1 136 Gene3D G3DSA:3.90.1590.10 2 134 6.1E-38 T 26-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RGE_RS02770 6dcafe79b037d987a17bde001a855500 566 SUPERFAMILY SSF48452 27 215 1.02E-11 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS02770 6dcafe79b037d987a17bde001a855500 566 Gene3D G3DSA:1.25.40.10 108 220 7.4E-8 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS02770 6dcafe79b037d987a17bde001a855500 566 Gene3D G3DSA:1.25.40.10 28 107 3.5E-7 T 26-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RGE_RS23410 475abefc8350caf78280fb77af2fdd73 377 Pfam PF02706 Chain length determinant protein 27 173 2.0E-17 T 26-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 RGE_RS02955 07a5963f3e974f559629586b62bc4128 101 ProDom PD104924 XAC1607 AF0417 11 68 0.003 T 26-04-2016 RGE_RS02910 682538cc96c02f70a96e2f990b9d0970 163 Pfam PF07603 Protein of unknown function (DUF1566) 35 160 5.8E-28 T 26-04-2016 IPR011460 Protein of unknown function DUF1566 RGE_RS03645 91ea627776a09ea6cf1112b1686f31af 174 Pfam PF01814 Hemerythrin HHE cation binding domain 17 151 5.7E-19 T 26-04-2016 IPR012312 Haemerythrin-like RGE_RS03645 91ea627776a09ea6cf1112b1686f31af 174 Gene3D G3DSA:1.20.120.520 4 172 1.3E-40 T 26-04-2016 RGE_RS09230 1370efb4e750aadf369b5f9ee6f7355f 64 Pfam PF07869 Protein of unknown function (DUF1656) 4 58 6.6E-19 T 26-04-2016 IPR012451 Protein of unknown function DUF1656 RGE_RS13690 fafd614991ebac73d8572c9a4e4cf3cf 236 Pfam PF11304 Protein of unknown function (DUF3106) 32 132 4.3E-30 T 26-04-2016 IPR021455 Protein of unknown function DUF3106 RGE_RS11130 f8ccc09e89a69c4c40c5785077ed2dae 100 Hamap MF_02117 N(2)-fixation sustaining protein CowN [cowN]. 8 100 23.157 T 26-04-2016 IPR024899 Nitrogen fixation-sustaining protein CowN GO:0009399 RGE_RS11175 d5b374e5fffe6c012918fbf10b067b2d 88 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 7 78 9.9E-12 T 26-04-2016 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 RGE_RS08595 e3bbdca0132241809cd6f9898f5d95c7 416 Pfam PF07399 Putative Na+/H+ antiporter 6 416 4.0E-173 T 26-04-2016 IPR009978 Putative Na+/H+ antiporter RGE_RS03395 3c994f9227f2afbcb753a59a53832763 182 TIGRFAM TIGR02548 casB_cse2: CRISPR type I-E/ECOLI-associated protein CasB/Cse2 11 163 8.9E-25 T 26-04-2016 IPR013382 CRISPR-associated protein Cse2 RGE_RS03395 3c994f9227f2afbcb753a59a53832763 182 Pfam PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) 23 162 3.7E-35 T 26-04-2016 IPR013382 CRISPR-associated protein Cse2 RGE_RS01775 2e2214c146b723f464e64152734f373d 268 Gene3D G3DSA:2.50.20.10 29 265 2.4E-59 T 26-04-2016 RGE_RS01775 2e2214c146b723f464e64152734f373d 268 SUPERFAMILY SSF89392 224 253 1.22E-6 T 26-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX RGE_RS01775 2e2214c146b723f464e64152734f373d 268 SUPERFAMILY SSF89392 99 192 1.22E-6 T 26-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX RGE_RS01775 2e2214c146b723f464e64152734f373d 268 PIRSF PIRSF028205 11 266 2.5E-59 T 26-04-2016 IPR011220 Uncharacterised conserved protein UCP028205 RGE_RS01775 2e2214c146b723f464e64152734f373d 268 Pfam PF17131 Outer membrane lipoprotein-sorting protein 86 263 5.8E-35 T 26-04-2016 IPR033399 Putative outer membrane lipoprotein-sorting protein RGE_RS09860 548e8a67e0e895d2d1be2fac1169575d 141 Pfam PF05232 Chlorhexidine efflux transporter 4 65 6.6E-21 T 26-04-2016 IPR007896 Chlorhexidine efflux transporter RGE_RS09860 548e8a67e0e895d2d1be2fac1169575d 141 Pfam PF05232 Chlorhexidine efflux transporter 71 133 2.5E-19 T 26-04-2016 IPR007896 Chlorhexidine efflux transporter RGE_RS09860 548e8a67e0e895d2d1be2fac1169575d 141 PANTHER PTHR42641 6 138 1.8E-30 T 26-04-2016 RGE_RS16340 853e414af86dd5606841643846b51905 154 TIGRFAM TIGR03054 photo_alph_chp1: putative photosynthetic complex assembly protein 15 144 3.5E-30 T 26-04-2016 IPR017495 Putative photosynthetic complex assembly protein RGE_RS03465 5afcb072b6b304177b880629a53be728 88 Gene3D G3DSA:1.10.150.20 12 52 6.9E-7 T 26-04-2016 RGE_RS04775 4e007bcfa8ef8f2527d0ecf1075736ff 152 SUPERFAMILY SSF55961 1 150 8.52E-19 T 26-04-2016 RGE_RS04775 4e007bcfa8ef8f2527d0ecf1075736ff 152 Gene3D G3DSA:3.30.530.20 6 150 8.0E-15 T 26-04-2016 IPR023393 START-like domain RGE_RS07095 85fa6dbe17df50e136c9ae235ebe80ab 88 SUPERFAMILY SSF54403 1 56 6.8E-7 T 26-04-2016 RGE_RS10840 e269b6efae030baf01bacf347b6e1f20 272 PANTHER PTHR31632 1 263 6.7E-29 T 26-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 RGE_RS10840 e269b6efae030baf01bacf347b6e1f20 272 Pfam PF03239 Iron permease FTR1 family 1 252 1.1E-26 T 26-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 RGE_RS05860 7315bf62392e5ebc58b39329fadbdfd7 159 Pfam PF07853 Protein of unknown function (DUF1648) 10 54 1.1E-8 T 26-04-2016 IPR012867 Domain of unknown function DUF1648 RGE_RS22265 bc4720ceb45eb36bc42acf31357cbca9 322 PANTHER PTHR32196 8 322 2.8E-79 T 26-04-2016 RGE_RS22265 bc4720ceb45eb36bc42acf31357cbca9 322 PANTHER PTHR32196:SF40 8 322 2.8E-79 T 26-04-2016 RGE_RS22265 bc4720ceb45eb36bc42acf31357cbca9 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 298 1.3E-34 T 26-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RGE_RS19710 fbdcbd55977d2e13cd08701f7084b333 315 Pfam PF02655 ATP-grasp domain 123 287 7.3E-24 T 26-04-2016 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 RGE_RS19710 fbdcbd55977d2e13cd08701f7084b333 315 SUPERFAMILY SSF56059 112 303 8.25E-17 T 26-04-2016 RGE_RS19710 fbdcbd55977d2e13cd08701f7084b333 315 PIRSF PIRSF016766 2 313 2.0E-53 T 26-04-2016 IPR024710 Tyramine--L-glutamate ligase KEGG: 00680+6.3.4.24|MetaCyc: PWY-5254|UniPathway: UPA00080 RGE_RS19710 fbdcbd55977d2e13cd08701f7084b333 315 Gene3D G3DSA:3.30.470.20 115 141 2.4E-4 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS19710 fbdcbd55977d2e13cd08701f7084b333 315 Gene3D G3DSA:3.30.470.20 195 289 2.4E-4 T 26-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RGE_RS07770 2378376d6b336c4e1311337c3a03709a 177 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 36 164 6.6E-29 T 26-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RGE_RS07770 2378376d6b336c4e1311337c3a03709a 177 PANTHER PTHR35011 23 176 1.9E-20 T 26-04-2016 RGE_RS09300 929f3f7b99f1bed432d8e53d59875546 72 Gene3D G3DSA:1.10.700.10 14 50 3.6E-4 T 26-04-2016 IPR011986 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit RGE_RS09300 929f3f7b99f1bed432d8e53d59875546 72 SUPERFAMILY SSF48076 14 51 5.62E-5 T 26-04-2016 IPR011986 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit RGE_RS03005 da97f48d18067e111a19d3153d6c7c22 105 Pfam PF09919 Uncharacterized conserved protein (DUF2149) 14 102 2.8E-28 T 26-04-2016 IPR018676 Protein of unknown function DUF2149 RGE_RS12700 df60215a9c0305306f908977e988ebb3 86 Pfam PF16290 Domain of unknown function (DUF4936) 4 84 1.1E-22 T 26-04-2016 IPR032556 Protein of unknown function DUF4936 RGE_RS21110 79d942501c4676810c146871cfa1965f 118 Pfam PF01883 Domain of unknown function DUF59 48 111 1.6E-5 T 26-04-2016 IPR002744 Domain of unknown function DUF59 RGE_RS11315 426cd2ba796108af873341831fe54a2e 198 SUPERFAMILY SSF48695 44 92 1.61E-5 T 26-04-2016 IPR011031 Multihaem cytochrome RGE_RS11315 426cd2ba796108af873341831fe54a2e 198 Gene3D G3DSA:1.10.3820.10 47 97 3.2E-4 T 26-04-2016 RGE_RS17360 854ba59cf3c161d1d9c0b5bd055023ef 149 Pfam PF04519 Polymer-forming cytoskeletal 49 143 7.4E-18 T 26-04-2016 IPR007607 Protein of unknown function DUF583 RGE_RS16970 8d8100dc9b1bab9dc43bda9c7b622f28 375 Pfam PF06804 NlpB/DapX lipoprotein 44 370 2.2E-48 T 26-04-2016 IPR010653 NlpB/DapX lipoprotein RGE_RS06425 2071c8821b1af42f10422d3ee8310fb5 147 Pfam PF11026 Protein of unknown function (DUF2721) 18 141 9.9E-31 T 26-04-2016 IPR021279 Protein of unknown function DUF2721 RGE_RS10800 1bb487c58547a3a0dc028f4bd45fa632 227 Pfam PF05552 Conserved TM helix 10 56 3.4E-9 T 26-04-2016 IPR008910 Conserved TM helix RGE_RS10800 1bb487c58547a3a0dc028f4bd45fa632 227 Pfam PF05552 Conserved TM helix 106 150 2.6E-9 T 26-04-2016 IPR008910 Conserved TM helix RGE_RS14750 8c687ac46c595383cebab1c6b25d9c85 190 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 14 152 7.9E-15 T 26-04-2016 IPR017734 Type VI secretion system, lipoprotein SciN RGE_RS14750 8c687ac46c595383cebab1c6b25d9c85 190 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 22 161 2.4E-21 T 26-04-2016 IPR017734 Type VI secretion system, lipoprotein SciN RGE_RS20370 bc4201d4a2a7c3ab1131bb8a7c50d601 214 SUPERFAMILY SSF52833 67 205 9.27E-10 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS20370 bc4201d4a2a7c3ab1131bb8a7c50d601 214 Gene3D G3DSA:3.40.30.10 59 203 3.8E-6 T 26-04-2016 IPR012336 Thioredoxin-like fold RGE_RS05500 837bf5bb5dddc5c464af154cf15adeff 207 SUPERFAMILY SSF53639 21 174 8.44E-5 T 26-04-2016 IPR001303 Class II aldolase/adducin N-terminal RGE_RS06525 b9513840b5b47da50c6615ecfd0f4773 127 SUPERFAMILY SSF51182 36 125 2.45E-6 T 26-04-2016 IPR011051 RmlC-like cupin domain RGE_RS15495 cdea768fa4bbadc6bc6aef37a87cf388 229 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 9 212 6.6E-28 T 26-04-2016 RGE_RS02785 86717084dbfe1638080a76f1b1289d67 164 Pfam PF14235 Domain of unknown function (DUF4337) 1 160 1.2E-53 T 26-04-2016 IPR025570 Protein of unknown function DUF4337 RGE_RS13065 fb647e1f9a349629318c0ece03e8bfd6 233 Pfam PF04402 Protein of unknown function (DUF541) 31 226 3.0E-27 T 26-04-2016 IPR007497 Protein of unknown function DUF541 RGE_RS16335 ef9a7b2a68dcaef7c913d9950498458e 227 Pfam PF03703 Bacterial PH domain 104 193 8.1E-22 T 26-04-2016 IPR005182 Domain of unknown function DUF304 RGE_RS04385 0c43c818ddd958225b800231f26b0237 267 Pfam PF11392 Protein of unknown function (DUF2877) 156 262 2.2E-24 T 26-04-2016 IPR021530 Protein of unknown function DUF2877 RGE_RS20840 b6b57483b9ce07f38a36cb2df1205fef 85 Pfam PF04319 NifZ domain 7 76 7.0E-22 T 26-04-2016 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 RGE_RS18585 c71d9b3fab7bbd78f7e210592ed1bfe0 151 Pfam PF07681 DoxX 12 112 3.1E-19 T 26-04-2016 IPR032808 DoxX family RGE_RS14275 d7476953fb8c041184c559297c3cdd4f 217 TIGRFAM TIGR02595 PEP_exosort: PEP-CTERM protein-sorting domain 188 211 4.9E-4 T 26-04-2016 IPR013424 PEP-CTERM protein-sorting domain RGE_RS15075 b5b5c7fe46739acbf37b34cb66644a88 164 Pfam PF13511 Domain of unknown function (DUF4124) 15 70 7.7E-7 T 26-04-2016 IPR025392 Domain of unknown function DUF4124 RGE_RS17445 a76d7c0d8c21b3b21b85ec7085beb41f 189 PIRSF PIRSF016919 1 189 8.7E-49 T 26-04-2016 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein RGE_RS17445 a76d7c0d8c21b3b21b85ec7085beb41f 189 Pfam PF04955 HupE / UreJ protein 9 185 6.8E-44 T 26-04-2016 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein RGE_RS18575 9e6339aa2095ac2abc32958bf3df2428 212 Pfam PF06532 Protein of unknown function (DUF1109) 10 212 1.3E-43 T 26-04-2016 IPR009495 Protein of unknown function DUF1109 RGE_RS06150 2a41007a0160b7c1025a78a51ac2c1e5 282 SUPERFAMILY SSF110997 207 280 6.8E-14 T 26-04-2016 IPR007730 Sporulation-related domain GO:0042834 RGE_RS06150 2a41007a0160b7c1025a78a51ac2c1e5 282 Gene3D G3DSA:3.30.70.1070 204 280 2.2E-15 T 26-04-2016 IPR007730 Sporulation-related domain GO:0042834 RGE_RS06150 2a41007a0160b7c1025a78a51ac2c1e5 282 Pfam PF05036 Sporulation related domain 208 280 2.5E-15 T 26-04-2016 IPR007730 Sporulation-related domain GO:0042834 RGE_RS04530 78e6a7649884f0c61081081a249a79a2 189 PANTHER PTHR12608 3 189 9.1E-31 T 26-04-2016 IPR001727 Uncharacterised protein family UPF0016 GO:0016020 RGE_RS04530 78e6a7649884f0c61081081a249a79a2 189 Pfam PF01169 Uncharacterized protein family UPF0016 104 178 2.7E-22 T 26-04-2016 IPR001727 Uncharacterised protein family UPF0016 GO:0016020 RGE_RS04530 78e6a7649884f0c61081081a249a79a2 189 Pfam PF01169 Uncharacterized protein family UPF0016 6 80 5.3E-20 T 26-04-2016 IPR001727 Uncharacterised protein family UPF0016 GO:0016020 RGE_RS10735 757bf33131d131ee93313ef24f62916d 94 Pfam PF13591 MerR HTH family regulatory protein 14 93 1.4E-9 T 26-04-2016 RGE_RS14730 4c913b6a370c497874bdd7a641ed72bd 64 Pfam PF12244 Protein of unknown function (DUF3606) 11 54 1.4E-12 T 26-04-2016 IPR022037 Protein of unknown function DUF3606 RGE_RS01975 1558e01d6259f1fd54fa1d6a4e51d37d 368 Pfam PF14907 Uncharacterised nucleotidyltransferase 21 275 6.1E-45 T 26-04-2016 RGE_RS00780 2c40f815f01f79e365057f212af0ab44 434 SUPERFAMILY SSF56935 269 309 1.86E-15 T 26-04-2016 RGE_RS00780 2c40f815f01f79e365057f212af0ab44 434 SUPERFAMILY SSF56935 374 408 1.86E-15 T 26-04-2016 RGE_RS00780 2c40f815f01f79e365057f212af0ab44 434 SUPERFAMILY SSF56935 27 236 1.86E-15 T 26-04-2016 RGE_RS02490 3142dcdfe9cfa9b1b1ffbf3ae240e01f 319 Pfam PF13690 Chemotaxis phosphatase CheX 168 270 1.0E-13 T 26-04-2016 IPR028051 Chemotaxis phosphatase CheX-like domain KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RGE_RS14305 f0333609d1bcd1a953efefdf61e43a3a 118 Pfam PF11162 Protein of unknown function (DUF2946) 13 115 6.3E-10 T 26-04-2016 IPR021333 Protein of unknown function DUF2946 RGE_RS06855 326e6a3c8d553970f9f22190c882f02d 101 Pfam PF09413 Putative prokaryotic signal transducing protein 1 68 9.2E-11 T 26-04-2016 IPR018551 Domain of unknown function DUF2007 RGE_RS02015 63c274cd77eb07d1b1a3c80a132631ad 499 TIGRFAM TIGR03016 pepcterm_hypo_1: uncharacterized protein, PEP-CTERM system associated 33 499 2.4E-84 T 26-04-2016 IPR017467 Conserved hypothetical protein CHP03016, PEP-CTERM RGE_RS00265 47bf3f191e02bd679cd1aa0938dc861e 64 Pfam PF09834 Predicted membrane protein (DUF2061) 1 52 1.8E-18 T 26-04-2016 IPR018638 Domain of unknown function DUF2061, membrane RGE_RS03910 03e2b5c5594ab073e516795f8c6b3637 161 Pfam PF04612 Type II secretion system (T2SS), protein M 7 149 3.7E-22 T 26-04-2016 IPR007690 Type II secretion system, protein M GO:0006858 RGE_RS00670 ef714e4fe66774aa9e9ea5e15275b33c 103 PANTHER PTHR13943 1 94 1.2E-31 T 26-04-2016 RGE_RS00670 ef714e4fe66774aa9e9ea5e15275b33c 103 PANTHER PTHR13943:SF48 1 94 1.2E-31 T 26-04-2016 RGE_RS06965 30f345e969f62b75dc94dc85716219ba 249 Pfam PF10014 2OG-Fe dioxygenase 47 237 5.5E-65 T 26-04-2016 IPR018724 2OG-Fe dioxygenase RGE_RS18045 62b26b8470e0a6c0897f6de7ceabfa06 390 Pfam PF05762 VWA domain containing CoxE-like protein 181 272 1.4E-7 T 26-04-2016 IPR008912 Uncharacterised protein family CoxE-like RGE_RS16365 0aaa1d38c449633f79a71a988300d0ad 283 SUPERFAMILY SSF159245 2 259 3.14E-50 T 26-04-2016 RGE_RS13685 ae6c0bd4335711f1def6d238bf52cc11 140 Pfam PF12279 Protein of unknown function (DUF3619) 14 137 4.2E-39 T 26-04-2016 IPR022064 Protein of unknown function DUF3619 RGE_RS11165 c5385bfafa0ad94530fce681ea7785bc 85 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 16 82 3.1E-24 T 26-04-2016 IPR018720 Domain of unknown function DUF2249 RGE_RS09345 eecf7f7651e01eb83ca02a9248657a82 183 Pfam PF05573 NosL 26 169 2.0E-47 T 26-04-2016 IPR008719 Nitrous oxide reductase accessory protein NosL RGE_RS09345 eecf7f7651e01eb83ca02a9248657a82 183 PANTHER PTHR41247 11 180 2.4E-22 T 26-04-2016 RGE_RS09345 eecf7f7651e01eb83ca02a9248657a82 183 SUPERFAMILY SSF160387 65 179 8.37E-30 T 26-04-2016 RGE_RS11235 a97223497efeb5e98309bfd434c2baa7 219 Pfam PF10001 Uncharacterized protein conserved in bacteria (DUF2242) 62 181 1.4E-48 T 26-04-2016 IPR018718 Protein of unknown function DUF2242 RGE_RS07045 30a835aad0f551605736fc2c72583b24 287 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 7 219 3.7E-25 T 26-04-2016 RGE_RS14550 4e53c43317afc283f31dcca88e42d11a 195 Pfam PF06666 Protein of unknown function (DUF1173) 5 185 7.1E-39 T 26-04-2016 IPR009553 Protein of unknown function DUF1173 RGE_RS06325 2210336a92ebc1feabb4b4f945f37809 157 Pfam PF09900 Predicted membrane protein (DUF2127) 11 147 1.7E-39 T 26-04-2016 IPR021125 Protein of unknown function DUF2127 RGE_RS17635 5fbdef383de7a0180eeee658c67862db 245 Pfam PF15579 Immunity protein 52 135 239 9.4E-36 T 26-04-2016 IPR028969 Immunity protein 52 RGE_RS15975 04e8ec915031c6abf0209db5aaaa6bcc 244 Pfam PF07786 Protein of unknown function (DUF1624) 7 227 1.3E-69 T 26-04-2016 IPR012429 Protein of unknown function DUF1624 KEGG: 00531+2.3.1.78 RGE_RS20835 c4717c9d6d7d857e88e08d596bb801d4 111 Pfam PF04319 NifZ domain 16 87 5.1E-29 T 26-04-2016 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 RGE_RS05675 2cf8c7b9e66d00279e6da7cc36bf0231 122 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 24 83 4.8E-7 T 26-04-2016 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0071436 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 RGE_RS10975 735897efa1556eaa519ce7382afe4879 316 Pfam PF13795 HupE / UreJ protein 135 280 4.1E-49 T 26-04-2016 IPR032809 Putative HupE/UreJ protein RGE_RS01125 b841872f8037fecf9de94859eefe7a0f 159 Pfam PF03899 ATP synthase I chain 46 143 1.2E-13 T 26-04-2016 IPR005598 ATP synthase protein I RGE_RS17160 560377744a79592ff4e86a52394201ae 190 Pfam PF07813 LTXXQ motif family protein 75 170 1.7E-11 T 26-04-2016 IPR012899 LTXXQ motif family protein GO:0042597 RGE_RS22350 74a19590d647053e56716f576f42d1d6 262 Pfam PF12412 Protein of unknown function (DUF3667) 22 63 3.7E-15 T 26-04-2016 IPR022134 Protein of unknown function DUF3667 RGE_RS17680 0bfe4d8cfadfe56ebe3acc50faf87d05 151 Pfam PF04214 Protein of unknown function, DUF 54 122 4.2E-31 T 26-04-2016 IPR007332 Protein of unknown function DUF411 RGE_RS03945 5db8df8e8dc3b0adf7d38d8329608f9a 198 Pfam PF11356 Type II secretion system protein C 61 125 3.1E-6 T 26-04-2016 IPR024961 Type II secretion system protein C, N-terminal RGE_RS13560 15da1f2f9fee43b88a8e29e2db8aad7b 217 Pfam PF11828 Protein of unknown function (DUF3348) 1 212 1.2E-49 T 26-04-2016 IPR021783 Protein of unknown function DUF3348 RGE_RS04105 5ed8fa2c47c419ce80dd08e1b365936e 229 Pfam PF16537 Type II secretion system protein B 170 228 1.5E-18 T 26-04-2016 IPR032389 Type II secretion system protein B RGE_RS02980 cb3eceb1839c7bb7a10fe6e550f24647 354 Pfam PF05171 Haemin-degrading HemS.ChuX domain 116 169 4.6E-8 T 26-04-2016 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 RGE_RS02980 cb3eceb1839c7bb7a10fe6e550f24647 354 Pfam PF05171 Haemin-degrading HemS.ChuX domain 225 348 5.2E-10 T 26-04-2016 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 RGE_RS02980 cb3eceb1839c7bb7a10fe6e550f24647 354 SUPERFAMILY SSF144064 38 348 2.26E-48 T 26-04-2016 RGE_RS10315 5a29f39aac3d354ab01c9c932ecf85ea 95 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 8 77 3.0E-24 T 26-04-2016 IPR018720 Domain of unknown function DUF2249 RGE_RS15530 6c42deb0f941c37e5cc80c638068a83b 55 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 1 42 2.8E-8 T 26-04-2016 IPR008621 Cbb3-type cytochrome oxidase component RGE_RS17970 aaa0ac80e2b6b0b68f03294e4c12f5eb 68 Pfam PF11943 Protein of unknown function (DUF3460) 9 64 4.3E-27 T 26-04-2016 IPR021853 Protein of unknown function DUF3460 RGE_RS13850 6b48f4f54ec0580efddd594e704b9efb 362 Pfam PF13515 Fusaric acid resistance protein-like 209 334 6.6E-21 T 26-04-2016 RGE_RS00755 3b34a34d62d4a48cf90b976499ba8ad1 172 Pfam PF11161 Protein of unknown function (DUF2946) 1 170 1.2E-60 T 26-04-2016 IPR021332 Protein of unknown function DUF2944 RGE_RS00180 6645754b578133d30f2429f41b9f157c 429 Pfam PF14344 Domain of unknown function (DUF4397) 32 146 2.7E-17 T 26-04-2016 IPR025510 Domain of unknown function DUF4397 RGE_RS00180 6645754b578133d30f2429f41b9f157c 429 Pfam PF14344 Domain of unknown function (DUF4397) 241 349 2.7E-6 T 26-04-2016 IPR025510 Domain of unknown function DUF4397 RGE_RS03440 6d59cf4a3d34632b2757d3f8b54edc0d 346 SUPERFAMILY SSF143422 13 122 6.28E-5 T 26-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RGE_RS10835 6f0ec0e37c997d87f1bf80315431a366 454 Pfam PF12801 4Fe-4S binding domain 150 181 0.0046 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS10835 6f0ec0e37c997d87f1bf80315431a366 454 Pfam PF12801 4Fe-4S binding domain 65 100 1.9E-9 T 26-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RGE_RS18170 01592c299cede63f559681e90e05941a 124 Pfam PF14106 Domain of unknown function (DUF4279) 1 104 4.4E-16 T 26-04-2016 IPR025459 Protein of unknown function DUF4279 RGE_RS08940 3bf134fc7980a017a31ddca859b56478 431 Pfam PF14344 Domain of unknown function (DUF4397) 245 351 9.9E-11 T 26-04-2016 IPR025510 Domain of unknown function DUF4397 RGE_RS08940 3bf134fc7980a017a31ddca859b56478 431 Pfam PF14344 Domain of unknown function (DUF4397) 35 151 5.5E-21 T 26-04-2016 IPR025510 Domain of unknown function DUF4397