RRADSPS_RS00005	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
RRADSPS_RS00010	SM00480	DNA polymerase III beta subunit
RRADSPS_RS00025	SM00387	Histidine kinase-like ATPases
RRADSPS_RS00025	SM00433	TopoisomeraseII
RRADSPS_RS00030	SM00434	DNA Topoisomerase IV
RRADSPS_RS00100	SM00822	RRADSPS_RS00100
RRADSPS_RS00110	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS00110	SM01027	Beta-Casp domain
RRADSPS_RS00125	SM00220	Serine/Threonine protein kinases, catalytic domain
RRADSPS_RS00125	SM00740	RRADSPS_RS00125
RRADSPS_RS00150	SM00240	Forkhead associated domain
RRADSPS_RS00195	SM00853	MutL C terminal dimerisation domain
RRADSPS_RS00195	SM01340	RRADSPS_RS00195
RRADSPS_RS00205	SM00878	Biotin carboxylase C-terminal domain
RRADSPS_RS00240	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS00270	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS00280	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS00300	SM00861	Transketolase, pyrimidine binding domain
RRADSPS_RS00315	SM01350	RRADSPS_RS00315
RRADSPS_RS00390	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RRADSPS_RS00390	SM00481	DNA polymerase alpha chain like domain
RRADSPS_RS00390	SM00483	DNA polymerase X family
RRADSPS_RS00480	SM00271	DnaJ molecular chaperone homology domain
RRADSPS_RS00515	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RRADSPS_RS00515	SM00292	breast cancer carboxy-terminal domain
RRADSPS_RS00515	SM00532	Ligase N family
RRADSPS_RS00565	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS00700	SM00346	helix_turn_helix isocitrate lyase regulation
RRADSPS_RS00725	SM00466	SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
RRADSPS_RS00735	SM00052	Putative diguanylate phosphodiesterase
RRADSPS_RS00735	SM00267	diguanylate cyclase
RRADSPS_RS00790	SM00244	prohibitin homologues
RRADSPS_RS00805	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
RRADSPS_RS00805	SM00534	ATPase domain of DNA mismatch repair MUTS family
RRADSPS_RS00810	SM00853	MutL C terminal dimerisation domain
RRADSPS_RS00810	SM01340	RRADSPS_RS00810
RRADSPS_RS00845	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS00845	SM01086	C-terminal, D2-small domain, of ClpB protein
RRADSPS_RS00915	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS00955	SM00100	Cyclic nucleotide-monophosphate binding domain
RRADSPS_RS00960	SM00100	Cyclic nucleotide-monophosphate binding domain
RRADSPS_RS00965	SM00642	Alpha-amylase domain
RRADSPS_RS00970	SM00642	Alpha-amylase domain
RRADSPS_RS00975	SM00642	Alpha-amylase domain
RRADSPS_RS00980	SM00642	Alpha-amylase domain
RRADSPS_RS00985	SM00642	Alpha-amylase domain
RRADSPS_RS00990	SM00642	Alpha-amylase domain
RRADSPS_RS00995	SM00829	Enoylreductase
RRADSPS_RS01000	SM00642	Alpha-amylase domain
RRADSPS_RS01020	SM00474	3'-5' exonuclease
RRADSPS_RS01020	SM00482	DNA polymerase A domain
RRADSPS_RS01025	SM00116	Domain in cystathionine beta-synthase and other proteins.
RRADSPS_RS01035	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RRADSPS_RS01045	SM00028	Tetratricopeptide repeats
RRADSPS_RS01065	SM00729	Elongator protein 3, MiaB family, Radical SAM
RRADSPS_RS01070	SM00917	LeuA allosteric (dimerisation) domain
RRADSPS_RS01075	SM01329	RRADSPS_RS01075
RRADSPS_RS01085	SM00917	LeuA allosteric (dimerisation) domain
RRADSPS_RS01175	SM00644	RRADSPS_RS01175
RRADSPS_RS01215	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
RRADSPS_RS01220	SM00046	Diacylglycerol kinase catalytic domain (presumed)
RRADSPS_RS01230	SM01001	AIR carboxylase
RRADSPS_RS01245	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RRADSPS_RS01245	SM00387	Histidine kinase-like ATPases
RRADSPS_RS01245	SM00388	His Kinase A (phosphoacceptor) domain
RRADSPS_RS01250	SM00448	cheY-homologous receiver domain
RRADSPS_RS01250	SM00862	Transcriptional regulatory protein, C terminal
RRADSPS_RS01260	SM00852	Probable molybdopterin binding domain
RRADSPS_RS01265	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RRADSPS_RS01270	SM00465	GIY-YIG type nucleases (URI domain)
RRADSPS_RS01270	SM00479	RRADSPS_RS01270
RRADSPS_RS01275	SM00448	cheY-homologous receiver domain
RRADSPS_RS01275	SM00862	Transcriptional regulatory protein, C terminal
RRADSPS_RS01280	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RRADSPS_RS01280	SM00387	Histidine kinase-like ATPases
RRADSPS_RS01280	SM00388	His Kinase A (phosphoacceptor) domain
RRADSPS_RS01310	SM00244	prohibitin homologues
RRADSPS_RS01410	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS01455	SM00464	Found in ATP-dependent protease La (LON)
RRADSPS_RS01475	SM00986	Uracil DNA glycosylase superfamily
RRADSPS_RS01475	SM00987	UreE urease accessory protein, C-terminal domain 
RRADSPS_RS01485	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS01500	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
RRADSPS_RS01500	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
RRADSPS_RS01555	SM00448	cheY-homologous receiver domain
RRADSPS_RS01555	SM00862	Transcriptional regulatory protein, C terminal
RRADSPS_RS01560	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
RRADSPS_RS01580	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RRADSPS_RS01580	SM00895	RRADSPS_RS01580
RRADSPS_RS01635	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
RRADSPS_RS01635	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RRADSPS_RS01635	SM00091	PAS domain
RRADSPS_RS01635	SM00331	Sigma factor PP2C-like phosphatases
RRADSPS_RS01640	SM01006	Siderophore biosynthesis protein domain
RRADSPS_RS01645	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS01700	SM00422	helix_turn_helix, mercury resistance
RRADSPS_RS01700	SM00530	Helix-turn-helix XRE-family like proteins 
RRADSPS_RS01705	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
RRADSPS_RS01705	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
RRADSPS_RS01785	SM00028	Tetratricopeptide repeats
RRADSPS_RS01785	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS01810	SM00829	Enoylreductase
RRADSPS_RS01840	SM00387	Histidine kinase-like ATPases
RRADSPS_RS01880	SM00450	Rhodanese Homology Domain
RRADSPS_RS01915	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RRADSPS_RS01920	SM00852	Probable molybdopterin binding domain
RRADSPS_RS01935	SM00052	Putative diguanylate phosphodiesterase
RRADSPS_RS01935	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RRADSPS_RS01935	SM00091	PAS domain
RRADSPS_RS01935	SM00267	diguanylate cyclase
RRADSPS_RS01960	SM01236	RRADSPS_RS01960
RRADSPS_RS01965	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
RRADSPS_RS01965	SM01232	RRADSPS_RS01965
RRADSPS_RS01990	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS01990	SM01086	C-terminal, D2-small domain, of ClpB protein
RRADSPS_RS02000	SM00729	Elongator protein 3, MiaB family, Radical SAM
RRADSPS_RS02025	SM00881	CoA binding domain
RRADSPS_RS02070	SM00861	Transketolase, pyrimidine binding domain
RRADSPS_RS02080	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS02135	SM00861	Transketolase, pyrimidine binding domain
RRADSPS_RS02150	SM00829	Enoylreductase
RRADSPS_RS02155	SM00327	von Willebrand factor (vWF) type A domain
RRADSPS_RS02170	SM00028	Tetratricopeptide repeats
RRADSPS_RS02210	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
RRADSPS_RS02250	SM00878	Biotin carboxylase C-terminal domain
RRADSPS_RS02285	SM00984	UDP binding domain
RRADSPS_RS02300	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS02310	SM00493	RRADSPS_RS02310
RRADSPS_RS02315	SM00487	DEAD-like helicases superfamily
RRADSPS_RS02315	SM00490	helicase superfamily c-terminal domain
RRADSPS_RS02325	SM00822	RRADSPS_RS02325
RRADSPS_RS02385	SM00861	Transketolase, pyrimidine binding domain
RRADSPS_RS02470	SM00838	Elongation factor G C-terminus
RRADSPS_RS02470	SM00889	Elongation factor G, domain IV
RRADSPS_RS02535	SM00411	bacterial (prokaryotic) histone like domain
RRADSPS_RS02540	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
RRADSPS_RS02570	SM00883	Chaperonin 10 Kd subunit
RRADSPS_RS02575	SM00646	RRADSPS_RS02575
RRADSPS_RS02590	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS02670	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
RRADSPS_RS02670	SM01232	RRADSPS_RS02670
RRADSPS_RS02835	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RRADSPS_RS02865	SM00861	Transketolase, pyrimidine binding domain
RRADSPS_RS02915	SM00829	Enoylreductase
RRADSPS_RS02940	SM00829	Enoylreductase
RRADSPS_RS02960	SM00822	RRADSPS_RS02960
RRADSPS_RS02965	SM00822	RRADSPS_RS02965
RRADSPS_RS03015	SM00947	Carbonic anhydrase
RRADSPS_RS03020	SM00822	RRADSPS_RS03020
RRADSPS_RS03025	SM00823	Phosphopantetheine attachment site
RRADSPS_RS03095	SM00822	RRADSPS_RS03095
RRADSPS_RS03140	SM00346	helix_turn_helix isocitrate lyase regulation
RRADSPS_RS03160	SM00052	Putative diguanylate phosphodiesterase
RRADSPS_RS03175	SM00822	RRADSPS_RS03175
RRADSPS_RS03255	SM00448	cheY-homologous receiver domain
RRADSPS_RS03255	SM00862	Transcriptional regulatory protein, C terminal
RRADSPS_RS03270	SM00271	DnaJ molecular chaperone homology domain
RRADSPS_RS03275	SM00422	helix_turn_helix, mercury resistance
RRADSPS_RS03355	SM00046	Diacylglycerol kinase catalytic domain (presumed)
RRADSPS_RS03375	SM00116	Domain in cystathionine beta-synthase and other proteins.
RRADSPS_RS03380	SM01005	Alanine racemase, C-terminal domain
RRADSPS_RS03390	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RRADSPS_RS03400	SM00986	Uracil DNA glycosylase superfamily
RRADSPS_RS03400	SM00987	UreE urease accessory protein, C-terminal domain 
RRADSPS_RS03450	SM01240	RRADSPS_RS03450
RRADSPS_RS03490	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS03545	SM00116	Domain in cystathionine beta-synthase and other proteins.
RRADSPS_RS03545	SM01131	RRADSPS_RS03545
RRADSPS_RS03565	SM00845	GatB domain
RRADSPS_RS03575	SM00052	Putative diguanylate phosphodiesterase
RRADSPS_RS03575	SM00091	PAS domain
RRADSPS_RS03575	SM00267	diguanylate cyclase
RRADSPS_RS03615	SM01018	B12 binding domain
RRADSPS_RS03635	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
RRADSPS_RS03645	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS03710	SM00257	Lysin motif
RRADSPS_RS03725	SM00100	Cyclic nucleotide-monophosphate binding domain
RRADSPS_RS03725	SM00419	helix_turn_helix, cAMP Regulatory protein
RRADSPS_RS03785	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS03815	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS03820	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS03840	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RRADSPS_RS03840	SM00245	tail specific protease
RRADSPS_RS03885	SM00650	Ribosomal RNA adenine dimethylases
RRADSPS_RS03905	SM01400	RRADSPS_RS03905
RRADSPS_RS03920	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RRADSPS_RS03945	SM00829	Enoylreductase
RRADSPS_RS03955	SM00487	DEAD-like helicases superfamily
RRADSPS_RS03955	SM00490	helicase superfamily c-terminal domain
RRADSPS_RS03955	SM00982	RRADSPS_RS03955
RRADSPS_RS03955	SM01058	CarD-like/TRCF domain
RRADSPS_RS03965	SM01192	RRADSPS_RS03965
RRADSPS_RS03965	SM01193	RRADSPS_RS03965
RRADSPS_RS04000	SM00822	RRADSPS_RS04000
RRADSPS_RS04040	SM00327	von Willebrand factor (vWF) type A domain
RRADSPS_RS04040	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS04115	SM00855	Phosphoglycerate mutase family
RRADSPS_RS04150	SM00829	Enoylreductase
RRADSPS_RS04155	SM00116	Domain in cystathionine beta-synthase and other proteins.
RRADSPS_RS04180	SM00829	Enoylreductase
RRADSPS_RS04190	SM00354	helix_turn _helix lactose operon repressor
RRADSPS_RS04205	SM00903	Flavin reductase like domain
RRADSPS_RS04290	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS04295	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS04300	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS04390	SM00729	Elongator protein 3, MiaB family, Radical SAM
RRADSPS_RS04395	SM00450	Rhodanese Homology Domain
RRADSPS_RS04450	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS04485	SM00788	Adenylosuccinate synthetase
RRADSPS_RS04490	SM01209	RRADSPS_RS04490
RRADSPS_RS04490	SM01210	RRADSPS_RS04490
RRADSPS_RS04500	SM00998	Adenylosuccinate lyase C-terminus
RRADSPS_RS04515	SM01211	RRADSPS_RS04515
RRADSPS_RS04550	SM00798	AICARFT/IMPCHase bienzyme
RRADSPS_RS04550	SM00851	MGS-like domain
RRADSPS_RS04560	SM00878	Biotin carboxylase C-terminal domain
RRADSPS_RS04565	SM00796	Allophanate hydrolase subunit 1
RRADSPS_RS04570	SM00797	Allophanate hydrolase subunit 2
RRADSPS_RS04585	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RRADSPS_RS04670	SM00829	Enoylreductase
RRADSPS_RS04680	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS04690	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS04690	SM00448	cheY-homologous receiver domain
RRADSPS_RS04695	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
RRADSPS_RS04695	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RRADSPS_RS04695	SM00091	PAS domain
RRADSPS_RS04695	SM00387	Histidine kinase-like ATPases
RRADSPS_RS04700	SM00267	diguanylate cyclase
RRADSPS_RS04775	SM00155	Phospholipase D. Active site motifs.
RRADSPS_RS04780	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS04810	SM00886	Stress responsive A/B Barrel Domain
RRADSPS_RS04840	SM00729	Elongator protein 3, MiaB family, Radical SAM
RRADSPS_RS04960	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS04965	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS04965	SM00448	cheY-homologous receiver domain
RRADSPS_RS05035	SM00704	CDGSH-type zinc finger. Function unknown.
RRADSPS_RS05080	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS05085	SM00062	Bacterial periplasmic substrate-binding proteins
RRADSPS_RS05115	SM01120	RRADSPS_RS05115
RRADSPS_RS05185	SM00825	Beta-ketoacyl synthase
RRADSPS_RS05210	SM00946	Prolyl-tRNA synthetase, C-terminal
RRADSPS_RS05235	SM00859	Semialdehyde dehydrogenase, NAD binding domain
RRADSPS_RS05250	SM00834	Putative regulatory protein
RRADSPS_RS05260	SM00481	DNA polymerase alpha chain like domain
RRADSPS_RS05300	SM00998	Adenylosuccinate lyase C-terminus
RRADSPS_RS05320	SM00882	Coenzyme A transferase
RRADSPS_RS05325	SM00882	Coenzyme A transferase
RRADSPS_RS05350	SM00829	Enoylreductase
RRADSPS_RS05370	SM00487	DEAD-like helicases superfamily
RRADSPS_RS05415	SM00642	Alpha-amylase domain
RRADSPS_RS05485	SM00919	Malic enzyme, NAD binding domain
RRADSPS_RS05485	SM01274	RRADSPS_RS05485
RRADSPS_RS05530	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS05535	SM00986	Uracil DNA glycosylase superfamily
RRADSPS_RS05535	SM00987	UreE urease accessory protein, C-terminal domain 
RRADSPS_RS05560	SM00404	Protein tyrosine phosphatase, catalytic domain motif
RRADSPS_RS05580	SM00852	Probable molybdopterin binding domain
RRADSPS_RS05585	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS05590	SM01230	RRADSPS_RS05590
RRADSPS_RS05625	SM00749	bacterial OsmY and nodulation domain
RRADSPS_RS05660	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS05680	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
RRADSPS_RS05690	SM00833	Cobalamin synthesis protein cobW C-terminal domain
RRADSPS_RS05720	SM00518	AP endonuclease family 2
RRADSPS_RS05725	SM00530	Helix-turn-helix XRE-family like proteins 
RRADSPS_RS05755	SM00822	RRADSPS_RS05755
RRADSPS_RS05800	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS05815	SM00091	PAS domain
RRADSPS_RS05830	SM00478	endonuclease III
RRADSPS_RS05915	SM00341	Helicase and RNase D C-terminal
RRADSPS_RS05915	SM00487	DEAD-like helicases superfamily
RRADSPS_RS05915	SM00490	helicase superfamily c-terminal domain
RRADSPS_RS05960	SM00100	Cyclic nucleotide-monophosphate binding domain
RRADSPS_RS05970	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
RRADSPS_RS05970	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RRADSPS_RS05970	SM00091	PAS domain
RRADSPS_RS05970	SM00387	Histidine kinase-like ATPases
RRADSPS_RS05975	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS05975	SM00448	cheY-homologous receiver domain
RRADSPS_RS05980	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS05980	SM00448	cheY-homologous receiver domain
RRADSPS_RS05990	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS05990	SM00448	cheY-homologous receiver domain
RRADSPS_RS06080	SM00014	Acid phosphatase homologues
RRADSPS_RS06095	SM00100	Cyclic nucleotide-monophosphate binding domain
RRADSPS_RS06095	SM00419	helix_turn_helix, cAMP Regulatory protein
RRADSPS_RS06105	SM00830	Chorismate mutase type II
RRADSPS_RS06120	SM00357	Cold shock protein domain
RRADSPS_RS06130	SM00855	Phosphoglycerate mutase family
RRADSPS_RS06155	SM00903	Flavin reductase like domain
RRADSPS_RS06180	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS06205	SM00530	Helix-turn-helix XRE-family like proteins 
RRADSPS_RS06250	SM00881	CoA binding domain
RRADSPS_RS06300	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS06320	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS06350	SM01329	RRADSPS_RS06350
RRADSPS_RS06385	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
RRADSPS_RS06420	SM00873	B3/4 domain
RRADSPS_RS06420	SM00874	tRNA synthetase B5 domain
RRADSPS_RS06420	SM00896	Ferredoxin-fold anticodon binding domain
RRADSPS_RS06505	SM00357	Cold shock protein domain
RRADSPS_RS06515	SM01092	CO dehydrogenase flavoprotein C-terminal domain
RRADSPS_RS06530	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RRADSPS_RS06575	SM00346	helix_turn_helix isocitrate lyase regulation
RRADSPS_RS06610	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RRADSPS_RS06615	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS06625	SM00966	SpoVT / AbrB like domain 
RRADSPS_RS06680	SM00220	Serine/Threonine protein kinases, catalytic domain
RRADSPS_RS06685	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RRADSPS_RS06685	SM00954	Region found in RelA / SpoT proteins
RRADSPS_RS06695	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS06770	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS06775	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS06780	SM00448	cheY-homologous receiver domain
RRADSPS_RS06780	SM00862	Transcriptional regulatory protein, C terminal
RRADSPS_RS06785	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RRADSPS_RS06785	SM00387	Histidine kinase-like ATPases
RRADSPS_RS06785	SM00388	His Kinase A (phosphoacceptor) domain
RRADSPS_RS06840	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
RRADSPS_RS06845	SM00732	Likely ribonuclease with RNase H fold.
RRADSPS_RS06900	SM01120	RRADSPS_RS06900
RRADSPS_RS06900	SM01121	RRADSPS_RS06900
RRADSPS_RS06910	SM00487	DEAD-like helicases superfamily
RRADSPS_RS06910	SM00490	helicase superfamily c-terminal domain
RRADSPS_RS06955	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
RRADSPS_RS06965	SM00822	RRADSPS_RS06965
RRADSPS_RS06975	SM00825	Beta-ketoacyl synthase
RRADSPS_RS06980	SM00358	Double-stranded RNA binding motif
RRADSPS_RS06980	SM00535	Ribonuclease III family
RRADSPS_RS06985	SM00968	SMC proteins Flexible Hinge Domain
RRADSPS_RS06990	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS06990	SM00962	SRP54-type protein, GTPase domain
RRADSPS_RS06990	SM00963	SRP54-type protein, helical bundle domain
RRADSPS_RS06995	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS06995	SM00962	SRP54-type protein, GTPase domain
RRADSPS_RS06995	SM00963	SRP54-type protein, helical bundle domain
RRADSPS_RS07035	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS07085	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RRADSPS_RS07105	SM00316	Ribosomal protein S1-like RNA-binding domain
RRADSPS_RS07105	SM00322	K homology RNA-binding domain
RRADSPS_RS07135	SM00904	Riboflavin kinase
RRADSPS_RS07140	SM01387	RRADSPS_RS07140
RRADSPS_RS07145	SM00316	Ribosomal protein S1-like RNA-binding domain
RRADSPS_RS07145	SM00322	K homology RNA-binding domain
RRADSPS_RS07155	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS07170	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS07180	SM00322	K homology RNA-binding domain
RRADSPS_RS07180	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RRADSPS_RS07195	SM00729	Elongator protein 3, MiaB family, Radical SAM
RRADSPS_RS07230	SM00422	helix_turn_helix, mercury resistance
RRADSPS_RS07235	SM00240	Forkhead associated domain
RRADSPS_RS07250	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS07255	SM00563	Phosphate acyltransferases
RRADSPS_RS07270	SM00363	S4 RNA-binding domain
RRADSPS_RS07285	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
RRADSPS_RS07285	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
RRADSPS_RS07330	SM00363	S4 RNA-binding domain
RRADSPS_RS07345	SM00841	Elongation factor P, C-terminal
RRADSPS_RS07345	SM01185	RRADSPS_RS07345
RRADSPS_RS07420	SM01409	RRADSPS_RS07420
RRADSPS_RS07425	SM00072	Guanylate kinase homologues.
RRADSPS_RS07445	SM00851	MGS-like domain
RRADSPS_RS07445	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
RRADSPS_RS07450	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
RRADSPS_RS07470	SM00363	S4 RNA-binding domain
RRADSPS_RS07505	SM00864	Tubulin/FtsZ family, GTPase domain
RRADSPS_RS07505	SM00865	Tubulin/FtsZ family, C-terminal domain
RRADSPS_RS07510	SM00842	Cell division protein FtsA
RRADSPS_RS07580	SM00400	zinc finger
RRADSPS_RS07580	SM00493	RRADSPS_RS07580
RRADSPS_RS07585	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RRADSPS_RS07595	SM01133	RRADSPS_RS07595
RRADSPS_RS07620	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RRADSPS_RS07625	SM00322	K homology RNA-binding domain
RRADSPS_RS07640	SM00271	DnaJ molecular chaperone homology domain
RRADSPS_RS07650	SM00838	Elongation factor G C-terminus
RRADSPS_RS07745	SM00562	RRADSPS_RS07745
RRADSPS_RS07770	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS07770	SM00994	ClpX C4-type zinc finger
RRADSPS_RS07770	SM01086	C-terminal, D2-small domain, of ClpB protein
RRADSPS_RS07845	SM00316	Ribosomal protein S1-like RNA-binding domain
RRADSPS_RS07845	SM00955	RRADSPS_RS07845
RRADSPS_RS07855	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS07865	SM00937	RRADSPS_RS07865
RRADSPS_RS07870	SM00957	SecA DEAD-like domain
RRADSPS_RS07870	SM00958	SecA preprotein cross-linking domain
RRADSPS_RS07960	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS08035	SM00937	RRADSPS_RS08035
RRADSPS_RS08050	SM00357	Cold shock protein domain
RRADSPS_RS08050	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS08050	SM00959	Rho termination factor, N-terminal domain
RRADSPS_RS08085	SM00836	DALR anticodon binding domain
RRADSPS_RS08085	SM01016	Arginyl tRNA synthetase N terminal dom
RRADSPS_RS08135	SM00881	CoA binding domain
RRADSPS_RS08180	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RRADSPS_RS08180	SM00895	RRADSPS_RS08180
RRADSPS_RS08200	SM00878	Biotin carboxylase C-terminal domain
RRADSPS_RS08230	SM00831	Cation transporter/ATPase, N-terminus
RRADSPS_RS08260	SM00046	Diacylglycerol kinase catalytic domain (presumed)
RRADSPS_RS08305	SM00861	Transketolase, pyrimidine binding domain
RRADSPS_RS08345	SM00420	helix_turn_helix, Deoxyribose operon repressor
RRADSPS_RS08345	SM01134	RRADSPS_RS08345
RRADSPS_RS08355	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS08480	SM00838	Elongation factor G C-terminus
RRADSPS_RS08515	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RRADSPS_RS08520	SM01092	CO dehydrogenase flavoprotein C-terminal domain
RRADSPS_RS08600	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
RRADSPS_RS08605	SM00829	Enoylreductase
RRADSPS_RS08635	SM00882	Coenzyme A transferase
RRADSPS_RS08640	SM00882	Coenzyme A transferase
RRADSPS_RS08660	SM00226	Low molecular weight phosphatase family
RRADSPS_RS08725	SM00028	Tetratricopeptide repeats
RRADSPS_RS08730	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS08755	SM00829	Enoylreductase
RRADSPS_RS08790	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
RRADSPS_RS08790	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
RRADSPS_RS08790	SM00493	RRADSPS_RS08790
RRADSPS_RS08845	SM01004	Delta-aminolevulinic acid dehydratase
RRADSPS_RS08905	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RRADSPS_RS08925	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS08935	SM00487	DEAD-like helicases superfamily
RRADSPS_RS08935	SM00490	helicase superfamily c-terminal domain
RRADSPS_RS08960	SM00996	S-adenosyl-L-homocysteine hydrolase
RRADSPS_RS08960	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
RRADSPS_RS08995	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
RRADSPS_RS09020	SM00465	GIY-YIG type nucleases (URI domain)
RRADSPS_RS09075	SM00487	DEAD-like helicases superfamily
RRADSPS_RS09075	SM00490	helicase superfamily c-terminal domain
RRADSPS_RS09090	SM00316	Ribosomal protein S1-like RNA-binding domain
RRADSPS_RS09095	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
RRADSPS_RS09095	SM00475	5'-3' exonuclease
RRADSPS_RS09095	SM00482	DNA polymerase A domain
RRADSPS_RS09105	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
RRADSPS_RS09115	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS09120	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS09165	SM00318	Staphylococcal nuclease homologues
RRADSPS_RS09215	SM00342	helix_turn_helix, arabinose operon control protein
RRADSPS_RS09220	SM00642	Alpha-amylase domain
RRADSPS_RS09250	SM00052	Putative diguanylate phosphodiesterase
RRADSPS_RS09250	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RRADSPS_RS09250	SM00091	PAS domain
RRADSPS_RS09250	SM00267	diguanylate cyclase
RRADSPS_RS09310	SM00829	Enoylreductase
RRADSPS_RS09315	SM00833	Cobalamin synthesis protein cobW C-terminal domain
RRADSPS_RS09330	SM00870	RRADSPS_RS09330
RRADSPS_RS09370	SM01329	RRADSPS_RS09370
RRADSPS_RS09395	SM00226	Low molecular weight phosphatase family
RRADSPS_RS09500	SM00354	helix_turn _helix lactose operon repressor
RRADSPS_RS09575	SM01207	RRADSPS_RS09575
RRADSPS_RS09585	SM00448	cheY-homologous receiver domain
RRADSPS_RS09640	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS09645	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS09655	SM00662	RNA polymerases D
RRADSPS_RS09660	SM00363	S4 RNA-binding domain
RRADSPS_RS09660	SM01390	RRADSPS_RS09660
RRADSPS_RS09680	SM00316	Ribosomal protein S1-like RNA-binding domain
RRADSPS_RS09740	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
RRADSPS_RS09745	SM01374	RRADSPS_RS09745
RRADSPS_RS09765	SM00322	K homology RNA-binding domain
RRADSPS_RS09780	SM01382	RRADSPS_RS09780
RRADSPS_RS09780	SM01383	RRADSPS_RS09780
RRADSPS_RS09800	SM01403	RRADSPS_RS09800
RRADSPS_RS09810	SM00838	Elongation factor G C-terminus
RRADSPS_RS09810	SM00889	Elongation factor G, domain IV
RRADSPS_RS09825	SM00663	RNA polymerase I subunit A N-terminus
RRADSPS_RS09850	SM00649	Ribosomal protein L11/L12
RRADSPS_RS09855	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
RRADSPS_RS09900	SM00967	RNA 2'-O ribose methyltransferase substrate binding
RRADSPS_RS09905	SM00840	RRADSPS_RS09905
RRADSPS_RS09930	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS09945	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS09945	SM01086	C-terminal, D2-small domain, of ClpB protein
RRADSPS_RS09970	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS09985	SM00977	TilS substrate C-terminal domain
RRADSPS_RS10025	SM00829	Enoylreductase
RRADSPS_RS10035	SM00966	SpoVT / AbrB like domain 
RRADSPS_RS10120	SM00903	Flavin reductase like domain
RRADSPS_RS10125	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS10135	SM00897	FIST N domain
RRADSPS_RS10135	SM01204	RRADSPS_RS10135
RRADSPS_RS10160	SM00448	cheY-homologous receiver domain
RRADSPS_RS10180	SM00347	helix_turn_helix multiple antibiotic resistance protein
RRADSPS_RS10200	SM00960	Roadblock/LC7 domain
RRADSPS_RS10255	SM00450	Rhodanese Homology Domain
RRADSPS_RS10280	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS10350	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RRADSPS_RS10385	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
RRADSPS_RS10490	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
RRADSPS_RS10505	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS10520	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS10620	SM00834	Putative regulatory protein
RRADSPS_RS10630	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS10630	SM00448	cheY-homologous receiver domain
RRADSPS_RS10690	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS10725	SM00829	Enoylreductase
RRADSPS_RS10735	SM00905	Dihydroneopterin aldolase
RRADSPS_RS10740	SM00563	Phosphate acyltransferases
RRADSPS_RS10770	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS10780	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
RRADSPS_RS10780	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
RRADSPS_RS10780	SM00493	RRADSPS_RS10780
RRADSPS_RS10825	SM00232	JAB/MPN domain
RRADSPS_RS10835	SM00450	Rhodanese Homology Domain
RRADSPS_RS10890	SM00357	Cold shock protein domain
RRADSPS_RS10895	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RRADSPS_RS10920	SM00938	Nitrogen regulatory protein P-II
RRADSPS_RS10995	SM00829	Enoylreductase
RRADSPS_RS11015	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS11020	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS11050	SM00878	Biotin carboxylase C-terminal domain
RRADSPS_RS11165	SM00271	DnaJ molecular chaperone homology domain
RRADSPS_RS11210	SM00506	Appr-1"-p processing enzyme
RRADSPS_RS11240	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS11250	SM00529	Helix-turn-helix diphteria tox regulatory element
RRADSPS_RS11250	SM00899	RRADSPS_RS11250
RRADSPS_RS11265	SM00822	RRADSPS_RS11265
RRADSPS_RS11330	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
RRADSPS_RS11355	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RRADSPS_RS11395	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RRADSPS_RS11400	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS11550	SM00028	Tetratricopeptide repeats
RRADSPS_RS11555	SM00028	Tetratricopeptide repeats
RRADSPS_RS11615	SM00859	Semialdehyde dehydrogenase, NAD binding domain
RRADSPS_RS11645	SM01266	RRADSPS_RS11645
RRADSPS_RS11680	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
RRADSPS_RS11735	SM00478	endonuclease III
RRADSPS_RS11735	SM00525	RRADSPS_RS11735
RRADSPS_RS11840	SM00028	Tetratricopeptide repeats
RRADSPS_RS11900	SM01022	RRADSPS_RS11900
RRADSPS_RS11960	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RRADSPS_RS12010	SM00530	Helix-turn-helix XRE-family like proteins 
RRADSPS_RS12030	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS12080	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS12105	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
RRADSPS_RS12105	SM01232	RRADSPS_RS12105
RRADSPS_RS12190	SM00116	Domain in cystathionine beta-synthase and other proteins.
RRADSPS_RS12190	SM01091	Transporter associated domain
RRADSPS_RS12195	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS12230	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS12235	SM00507	HNH nucleases
RRADSPS_RS12240	SM00448	cheY-homologous receiver domain
RRADSPS_RS12240	SM00862	Transcriptional regulatory protein, C terminal
RRADSPS_RS12255	SM00267	diguanylate cyclase
RRADSPS_RS12255	SM00448	cheY-homologous receiver domain
RRADSPS_RS12310	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS12330	SM00100	Cyclic nucleotide-monophosphate binding domain
RRADSPS_RS12330	SM00419	helix_turn_helix, cAMP Regulatory protein
RRADSPS_RS12350	SM00450	Rhodanese Homology Domain
RRADSPS_RS12355	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RRADSPS_RS12385	SM00448	cheY-homologous receiver domain
RRADSPS_RS12385	SM00862	Transcriptional regulatory protein, C terminal
RRADSPS_RS12395	SM00530	Helix-turn-helix XRE-family like proteins 
RRADSPS_RS12440	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS12455	SM00861	Transketolase, pyrimidine binding domain
RRADSPS_RS12465	SM00829	Enoylreductase
RRADSPS_RS12510	SM00861	Transketolase, pyrimidine binding domain
RRADSPS_RS12535	SM00419	helix_turn_helix, cAMP Regulatory protein
RRADSPS_RS12625	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS12625	SM00448	cheY-homologous receiver domain
RRADSPS_RS12710	SM00344	helix_turn_helix ASNC type
RRADSPS_RS12715	SM00986	Uracil DNA glycosylase superfamily
RRADSPS_RS12715	SM00987	UreE urease accessory protein, C-terminal domain 
RRADSPS_RS12735	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS12745	SM00062	Bacterial periplasmic substrate-binding proteins
RRADSPS_RS12745	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
RRADSPS_RS12840	SM00052	Putative diguanylate phosphodiesterase
RRADSPS_RS12840	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RRADSPS_RS12840	SM00267	diguanylate cyclase
RRADSPS_RS12955	SM00834	Putative regulatory protein
RRADSPS_RS12995	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RRADSPS_RS13030	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RRADSPS_RS13060	SM00849	Metallo-beta-lactamase superfamily
RRADSPS_RS13070	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RRADSPS_RS13070	SM00387	Histidine kinase-like ATPases
RRADSPS_RS13245	SM00327	von Willebrand factor (vWF) type A domain
RRADSPS_RS13250	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS13255	SM01092	CO dehydrogenase flavoprotein C-terminal domain
RRADSPS_RS13260	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RRADSPS_RS13285	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS13365	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS13380	SM00091	PAS domain
RRADSPS_RS13415	SM01130	RRADSPS_RS13415
RRADSPS_RS13435	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS13435	SM00448	cheY-homologous receiver domain
RRADSPS_RS13440	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RRADSPS_RS13440	SM00091	PAS domain
RRADSPS_RS13440	SM00387	Histidine kinase-like ATPases
RRADSPS_RS13440	SM00448	cheY-homologous receiver domain
RRADSPS_RS13455	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS13515	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS13605	SM00448	cheY-homologous receiver domain
RRADSPS_RS13605	SM00862	Transcriptional regulatory protein, C terminal
RRADSPS_RS13615	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS13620	SM00220	Serine/Threonine protein kinases, catalytic domain
RRADSPS_RS13635	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS13685	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RRADSPS_RS13710	SM00357	Cold shock protein domain
RRADSPS_RS13730	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS13790	SM00271	DnaJ molecular chaperone homology domain
RRADSPS_RS13810	SM00881	CoA binding domain
RRADSPS_RS13815	SM00422	helix_turn_helix, mercury resistance
RRADSPS_RS13840	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
RRADSPS_RS13840	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS13870	SM01230	RRADSPS_RS13870
RRADSPS_RS13890	SM00052	Putative diguanylate phosphodiesterase
RRADSPS_RS13905	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS13910	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RRADSPS_RS13915	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RRADSPS_RS13935	SM00028	Tetratricopeptide repeats
RRADSPS_RS13950	SM00470	ParB-like nuclease domain
RRADSPS_RS13965	SM00393	Putative single-stranded nucleic acids-binding domain
RRADSPS_RS13965	SM01245	RRADSPS_RS13965
RRADSPS_RS15395	SM00532	Ligase N family
RRADSPS_RS15805	SM00331	Sigma factor PP2C-like phosphatases
RRADSPS_RS15805	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
RRADSPS_RS15810	SM00240	Forkhead associated domain
RRADSPS_RS15815	SM00220	Serine/Threonine protein kinases, catalytic domain
RRADSPS_RS15835	SM00014	Acid phosphatase homologues
RRADSPS_RS15855	SM00387	Histidine kinase-like ATPases
RRADSPS_RS15855	SM00388	His Kinase A (phosphoacceptor) domain
RRADSPS_RS15855	SM01079	RRADSPS_RS15855
RRADSPS_RS15860	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RRADSPS_RS15860	SM00091	PAS domain
RRADSPS_RS15860	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS15895	SM00880	RRADSPS_RS15895
RRADSPS_RS15895	SM01118	RRADSPS_RS15895
RRADSPS_RS15930	SM00046	Diacylglycerol kinase catalytic domain (presumed)
RRADSPS_RS15955	SM00936	Penicillin-binding protein 5, C-terminal domain 
RRADSPS_RS15965	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS15980	SM00232	JAB/MPN domain
RRADSPS_RS15990	SM00073	Histidine Phosphotransfer domain
RRADSPS_RS15990	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RRADSPS_RS15990	SM00387	Histidine kinase-like ATPases
RRADSPS_RS15990	SM00388	His Kinase A (phosphoacceptor) domain
RRADSPS_RS15990	SM00448	cheY-homologous receiver domain
RRADSPS_RS16010	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RRADSPS_RS16010	SM00387	Histidine kinase-like ATPases
RRADSPS_RS16010	SM00388	His Kinase A (phosphoacceptor) domain
RRADSPS_RS16045	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
RRADSPS_RS16045	SM00267	diguanylate cyclase
RRADSPS_RS16045	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RRADSPS_RS16050	SM00347	helix_turn_helix multiple antibiotic resistance protein
RRADSPS_RS16085	SM00052	Putative diguanylate phosphodiesterase
RRADSPS_RS16085	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RRADSPS_RS16085	SM00091	PAS domain
RRADSPS_RS16085	SM00267	diguanylate cyclase
RRADSPS_RS16100	SM00422	helix_turn_helix, mercury resistance
RRADSPS_RS16105	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RRADSPS_RS16105	SM00091	PAS domain
RRADSPS_RS16105	SM00267	diguanylate cyclase
RRADSPS_RS16110	SM00347	helix_turn_helix multiple antibiotic resistance protein
RRADSPS_RS16120	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RRADSPS_RS16205	SM00894	Excalibur calcium-binding domain
RRADSPS_RS16230	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS16230	SM00843	RRADSPS_RS16230
RRADSPS_RS16265	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RRADSPS_RS16295	SM00091	PAS domain
RRADSPS_RS16295	SM00331	Sigma factor PP2C-like phosphatases
RRADSPS_RS16310	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS16365	SM00387	Histidine kinase-like ATPases
RRADSPS_RS16390	SM00014	Acid phosphatase homologues
RRADSPS_RS16395	SM00220	Serine/Threonine protein kinases, catalytic domain
RRADSPS_RS16400	SM00220	Serine/Threonine protein kinases, catalytic domain
RRADSPS_RS16475	SM00854	Bacterial capsule synthesis protein PGA_cap
RRADSPS_RS16485	SM00460	Transglutaminase/protease-like homologues
RRADSPS_RS16495	SM00387	Histidine kinase-like ATPases
RRADSPS_RS16500	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
RRADSPS_RS16500	SM00073	Histidine Phosphotransfer domain
RRADSPS_RS16500	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RRADSPS_RS16500	SM00091	PAS domain
RRADSPS_RS16500	SM00387	Histidine kinase-like ATPases
RRADSPS_RS16500	SM00388	His Kinase A (phosphoacceptor) domain
RRADSPS_RS16500	SM00448	cheY-homologous receiver domain
RRADSPS_RS16520	SM00421	helix_turn_helix, Lux Regulon
RRADSPS_RS16530	SM00220	Serine/Threonine protein kinases, catalytic domain
RRADSPS_RS16535	SM00347	helix_turn_helix multiple antibiotic resistance protein
RRADSPS_RS16535	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
RRADSPS_RS16565	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS16585	SM00382	ATPases associated with a variety of cellular activities
RRADSPS_RS16590	SM00387	Histidine kinase-like ATPases
RRADSPS_RS16590	SM00388	His Kinase A (phosphoacceptor) domain
RRADSPS_RS16605	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RRADSPS_RS16605	SM00866	RRADSPS_RS16605
