locus-tag class description CHD54_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CHD54_RS00005 PF00308 Bacterial dnaA protein CHD54_RS00005 PF11638 DnaA N-terminal domain CHD54_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CHD54_RS00010 PF02767 DNA polymerase III beta subunit, central domain CHD54_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CHD54_RS00015 PF02463 RecF/RecN/SMC N terminal domain CHD54_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS00020 PF00204 DNA gyrase B CHD54_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus CHD54_RS00020 PF18053 DNA gyrase B subunit insert domain CHD54_RS00020 PF01751 Toprim domain CHD54_RS00040 PF06178 Oligogalacturonate-specific porin protein (KdgM) CHD54_RS00045 PF07690 Major Facilitator Superfamily CHD54_RS00075 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS00075 PF01627 Hpt domain CHD54_RS00075 PF00672 HAMP domain CHD54_RS00075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS00075 PF00072 Response regulator receiver domain CHD54_RS00080 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CHD54_RS00085 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS00085 PF00072 Response regulator receiver domain CHD54_RS00090 PF03264 NapC/NirT cytochrome c family, N-terminal region CHD54_RS00095 PF00384 Molybdopterin oxidoreductase CHD54_RS00095 PF01568 Molydopterin dinucleotide binding domain CHD54_RS00095 PF18364 Molybdopterin oxidoreductase N-terminal domain CHD54_RS00100 PF02613 Nitrate reductase delta subunit CHD54_RS00105 PF00034 Cytochrome c CHD54_RS00105 PF14376 Haem-binding domain CHD54_RS00105 PF03150 Di-haem cytochrome c peroxidase CHD54_RS00110 PF00005 ABC transporter CHD54_RS00120 PF01578 Cytochrome C assembly protein CHD54_RS00125 PF04995 Heme exporter protein D (CcmD) CHD54_RS00145 PF03918 Cytochrome C biogenesis protein CHD54_RS00150 PF07676 WD40-like Beta Propeller Repeat CHD54_RS00150 PF12566 Protein of unknown function (DUF3748) CHD54_RS00155 PF07119 Protein of unknown function (DUF1375) CHD54_RS00165 PF00011 Hsp20/alpha crystallin family CHD54_RS00170 PF00011 Hsp20/alpha crystallin family CHD54_RS00180 PF06826 Predicted Permease Membrane Region CHD54_RS00180 PF02080 TrkA-C domain CHD54_RS00185 PF02656 Domain of unknown function (DUF202) CHD54_RS00190 PF02656 Domain of unknown function (DUF202) CHD54_RS00205 PF07690 Major Facilitator Superfamily CHD54_RS00220 PF13939 Toxin TisB, type I toxin-antitoxin system CHD54_RS00235 PF08049 IlvB leader peptide CHD54_RS00240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHD54_RS00240 PF00205 Thiamine pyrophosphate enzyme, central domain CHD54_RS00240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHD54_RS00245 PF01842 ACT domain CHD54_RS00250 PF00455 DeoR C terminal sensor domain CHD54_RS00250 PF08220 DeoR-like helix-turn-helix domain CHD54_RS00255 PF00294 pfkB family carbohydrate kinase CHD54_RS00260 PF07690 Major Facilitator Superfamily CHD54_RS00270 PF00072 Response regulator receiver domain CHD54_RS00270 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS00275 PF05231 MASE1 CHD54_RS00275 PF07730 Histidine kinase CHD54_RS00275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS00280 PF07690 Major Facilitator Superfamily CHD54_RS00285 PF07690 Major Facilitator Superfamily CHD54_RS00290 PF06711 Protein of unknown function (DUF1198) CHD54_RS00295 PF07690 Major Facilitator Superfamily CHD54_RS00300 PF00232 Glycosyl hydrolase family 1 CHD54_RS00310 PF00874 PRD domain CHD54_RS00310 PF00158 Sigma-54 interaction domain CHD54_RS00320 PF03610 PTS system fructose IIA component CHD54_RS00320 PF03830 PTS system sorbose subfamily IIB component CHD54_RS00325 PF03609 PTS system sorbose-specific iic component CHD54_RS00330 PF03613 PTS system mannose/fructose/sorbose family IID component CHD54_RS00335 PF03841 L-seryl-tRNA selenium transferase CHD54_RS00340 PF07071 KDGP aldolase CHD54_RS00345 PF04754 Putative transposase, YhgA-like CHD54_RS00350 PF00892 EamA-like transporter family CHD54_RS00355 PF02308 MgtC family CHD54_RS00360 PF00690 Cation transporter/ATPase, N-terminus CHD54_RS00360 PF00689 Cation transporting ATPase, C-terminus CHD54_RS00385 PF00857 Isochorismatase family CHD54_RS00405 PF13802 Galactose mutarotase-like CHD54_RS00405 PF01055 Glycosyl hydrolases family 31 CHD54_RS00410 PF05170 AsmA family CHD54_RS00415 PF00860 Permease family CHD54_RS00420 PF03616 Sodium/glutamate symporter CHD54_RS00425 PF00271 Helicase conserved C-terminal domain CHD54_RS00425 PF17191 RecG wedge domain CHD54_RS00425 PF00270 DEAD/DEAH box helicase CHD54_RS00430 PF12105 SpoU, rRNA methylase, C-terminal CHD54_RS00430 PF00588 SpoU rRNA Methylase family CHD54_RS00435 PF13291 ACT domain CHD54_RS00435 PF04607 Region found in RelA / SpoT proteins CHD54_RS00435 PF02824 TGS domain CHD54_RS00440 PF01192 RNA polymerase Rpb6 CHD54_RS00445 PF00625 Guanylate kinase CHD54_RS00450 PF01653 NAD-dependent DNA ligase adenylation domain CHD54_RS00450 PF03120 NAD-dependent DNA ligase OB-fold domain CHD54_RS00455 PF03458 UPF0126 domain CHD54_RS00475 PF03755 YicC-like family, N-terminal region CHD54_RS00475 PF08340 Domain of unknown function (DUF1732) CHD54_RS00480 PF01138 3' exoribonuclease family, domain 1 CHD54_RS00480 PF03725 3' exoribonuclease family, domain 2 CHD54_RS00485 PF00156 Phosphoribosyl transferase domain CHD54_RS00490 PF00440 Bacterial regulatory proteins, tetR family CHD54_RS00495 PF00692 dUTPase CHD54_RS00500 PF04127 DNA / pantothenate metabolism flavoprotein CHD54_RS00500 PF02441 Flavoprotein CHD54_RS00505 PF04002 RadC-like JAB domain CHD54_RS00510 PF00830 Ribosomal L28 family CHD54_RS00515 PF00471 Ribosomal protein L33 CHD54_RS00520 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CHD54_RS00520 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CHD54_RS00520 PF06827 Zinc finger found in FPG and IleRS CHD54_RS00525 PF01467 Cytidylyltransferase-like CHD54_RS00530 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CHD54_RS00535 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CHD54_RS00540 PF00534 Glycosyl transferases group 1 CHD54_RS00540 PF13439 Glycosyltransferase Family 4 CHD54_RS00570 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) CHD54_RS00580 PF04932 O-Antigen ligase CHD54_RS00585 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CHD54_RS00590 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CHD54_RS00595 PF01370 NAD dependent epimerase/dehydratase family CHD54_RS00600 PF00155 Aminotransferase class I and II CHD54_RS00605 PF00107 Zinc-binding dehydrogenase CHD54_RS00605 PF08240 Alcohol dehydrogenase GroES-like domain CHD54_RS00610 PF00535 Glycosyl transferase family 2 CHD54_RS00615 PF04748 Divergent polysaccharide deacetylase CHD54_RS00620 PF01551 Peptidase family M23 CHD54_RS00625 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CHD54_RS00625 PF01676 Metalloenzyme superfamily CHD54_RS00630 PF00581 Rhodanese-like domain CHD54_RS00635 PF00462 Glutaredoxin CHD54_RS00640 PF02556 Preprotein translocase subunit SecB CHD54_RS00645 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CHD54_RS00645 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CHD54_RS00650 PF00132 Bacterial transferase hexapeptide (six repeats) CHD54_RS00650 PF06426 Serine acetyltransferase, N-terminal CHD54_RS00655 PF00588 SpoU rRNA Methylase family CHD54_RS00660 PF01070 FMN-dependent dehydrogenase CHD54_RS00665 PF07729 FCD domain CHD54_RS00665 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS00670 PF02652 L-lactate permease CHD54_RS00675 PF10928 Protein of unknown function (DUF2810) CHD54_RS00685 PF05068 Mannitol repressor CHD54_RS00690 PF01232 Mannitol dehydrogenase Rossmann domain CHD54_RS00690 PF08125 Mannitol dehydrogenase C-terminal domain CHD54_RS00695 PF02378 Phosphotransferase system, EIIC CHD54_RS00695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHD54_RS00695 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CHD54_RS00700 PF00043 Glutathione S-transferase, C-terminal domain CHD54_RS00700 PF13417 Glutathione S-transferase, N-terminal domain CHD54_RS00705 PF03841 L-seryl-tRNA selenium transferase CHD54_RS00705 PF12390 Selenocysteine synthase N terminal CHD54_RS00710 PF00009 Elongation factor Tu GTP binding domain CHD54_RS00710 PF03144 Elongation factor Tu domain 2 CHD54_RS00710 PF09106 Elongation factor SelB, winged helix CHD54_RS00710 PF09107 Elongation factor SelB, winged helix CHD54_RS00715 PF00465 Iron-containing alcohol dehydrogenase CHD54_RS00720 PF00480 ROK family CHD54_RS00725 PF00171 Aldehyde dehydrogenase family CHD54_RS00730 PF07944 Beta-L-arabinofuranosidase, GH127 CHD54_RS00745 PF00596 Class II Aldolase and Adducin N-terminal domain CHD54_RS00750 PF01261 Xylose isomerase-like TIM barrel CHD54_RS00755 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CHD54_RS00760 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CHD54_RS00760 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CHD54_RS00765 PF07690 Major Facilitator Superfamily CHD54_RS00770 PF16154 Domain of unknown function (DUF4862) CHD54_RS00775 PF04074 YhcH/YjgK/YiaL CHD54_RS00780 PF02615 Malate/L-lactate dehydrogenase CHD54_RS00785 PF09339 IclR helix-turn-helix domain CHD54_RS00785 PF01614 Bacterial transcriptional regulator CHD54_RS00790 PF13247 4Fe-4S dicluster domain CHD54_RS00795 PF00155 Aminotransferase class I and II CHD54_RS00800 PF00128 Alpha amylase, catalytic domain CHD54_RS00805 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CHD54_RS00810 PF12833 Helix-turn-helix domain CHD54_RS00825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CHD54_RS00825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CHD54_RS00835 PF01757 Acyltransferase family CHD54_RS00845 PF13983 YsaB-like lipoprotein CHD54_RS00850 PF02091 Glycyl-tRNA synthetase alpha subunit CHD54_RS00855 PF02092 Glycyl-tRNA synthetase beta subunit CHD54_RS00855 PF05746 DALR anticodon binding domain CHD54_RS00865 PF00313 'Cold-shock' DNA-binding domain CHD54_RS00870 PF01381 Helix-turn-helix CHD54_RS00875 PF11254 Protein of unknown function (DUF3053) CHD54_RS00880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHD54_RS00880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHD54_RS00890 PF13488 Glycine zipper CHD54_RS00890 PF00691 OmpA family CHD54_RS00895 PF01568 Molydopterin dinucleotide binding domain CHD54_RS00895 PF18364 Molybdopterin oxidoreductase N-terminal domain CHD54_RS00895 PF00384 Molybdopterin oxidoreductase CHD54_RS00900 PF00583 Acetyltransferase (GNAT) family CHD54_RS00905 PF03352 Methyladenine glycosylase CHD54_RS00910 PF03797 Autotransporter beta-domain CHD54_RS00915 PF00884 Sulfatase CHD54_RS00915 PF08019 Phosphoethanolamine transferase EptA/EptB CHD54_RS00940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHD54_RS00945 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS00950 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS00950 PF12911 N-terminal TM domain of oligopeptide transport permease C CHD54_RS00955 PF00005 ABC transporter CHD54_RS00955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHD54_RS00960 PF00005 ABC transporter CHD54_RS00960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHD54_RS00965 PF03222 Tryptophan/tyrosine permease family CHD54_RS00975 PF13940 Toxin Ldr, type I toxin-antitoxin system CHD54_RS00980 PF11658 Cellulose biosynthesis protein BcsG CHD54_RS00985 PF11120 Cellulose biosynthesis protein BcsF CHD54_RS00990 PF10995 Cellulose biosynthesis GIL CHD54_RS00995 PF10945 Cellulose biosynthesis protein BcsR CHD54_RS01000 PF06564 Cellulose biosynthesis protein BcsQ CHD54_RS01005 PF03552 Cellulose synthase CHD54_RS01005 PF00535 Glycosyl transferase family 2 CHD54_RS01005 PF07238 PilZ domain CHD54_RS01010 PF03170 Bacterial cellulose synthase subunit CHD54_RS01015 PF01270 Glycosyl hydrolases family 8 CHD54_RS01020 PF13176 Tetratricopeptide repeat CHD54_RS01020 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CHD54_RS01030 PF00672 HAMP domain CHD54_RS01030 PF17154 Gammaproteobacterial periplasmic sensor domain CHD54_RS01030 PF00563 EAL domain CHD54_RS01030 PF00990 Diguanylate cyclase, GGDEF domain CHD54_RS01035 PF00375 Sodium:dicarboxylate symporter family CHD54_RS01040 PF00675 Insulinase (Peptidase family M16) CHD54_RS01040 PF05193 Peptidase M16 inactive domain CHD54_RS01045 PF00294 pfkB family carbohydrate kinase CHD54_RS01050 PF00563 EAL domain CHD54_RS01055 PF05170 AsmA family CHD54_RS01060 PF07690 Major Facilitator Superfamily CHD54_RS01060 PF00083 Sugar (and other) transporter CHD54_RS01065 PF03631 Virulence factor BrkB CHD54_RS01070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS01070 PF03466 LysR substrate binding domain CHD54_RS01080 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS01095 PF01204 Trehalase CHD54_RS01100 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS01100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHD54_RS01105 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CHD54_RS01110 PF01569 PAP2 superfamily CHD54_RS01115 PF01432 Peptidase family M3 CHD54_RS01120 PF04445 Putative SAM-dependent methyltransferase CHD54_RS01125 PF00854 POT family CHD54_RS01130 PF00582 Universal stress protein family CHD54_RS01135 PF10625 Universal stress protein B (UspB) CHD54_RS01140 PF01384 Phosphate transporter family CHD54_RS01150 PF13533 Biotin-lipoyl like CHD54_RS01155 PF00005 ABC transporter CHD54_RS01165 PF08753 NikR C terminal nickel binding domain CHD54_RS01165 PF01402 Ribbon-helix-helix protein, copG family CHD54_RS01170 PF01648 4'-phosphopantetheinyl transferase superfamily CHD54_RS01175 PF01594 AI-2E family transporter CHD54_RS01180 PF07690 Major Facilitator Superfamily CHD54_RS01185 PF08786 DcrB CHD54_RS01190 PF02592 Putative vitamin uptake transporter CHD54_RS01195 PF01206 Sulfurtransferase TusA CHD54_RS01200 PF00672 HAMP domain CHD54_RS01200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHD54_RS01200 PF02203 Tar ligand binding domain homologue CHD54_RS01205 PF00403 Heavy-metal-associated domain CHD54_RS01210 PF07947 YhhN family CHD54_RS01215 PF10694 Protein of unknown function (DUF2500) CHD54_RS01220 PF06611 Protein of unknown function (DUF1145) CHD54_RS01230 PF00448 SRP54-type protein, GTPase domain CHD54_RS01230 PF02881 SRP54-type protein, helical bundle domain CHD54_RS01235 PF00005 ABC transporter CHD54_RS01240 PF02687 FtsX-like permease family CHD54_RS01240 PF18075 FtsX extracellular domain CHD54_RS01245 PF04545 Sigma-70, region 4 CHD54_RS01245 PF04542 Sigma-70 region 2 CHD54_RS01250 PF13458 Periplasmic binding protein CHD54_RS01255 PF12568 Acetyltransferase (GNAT) domain, PanZ CHD54_RS01260 PF13458 Periplasmic binding protein CHD54_RS01265 PF02653 Branched-chain amino acid transport system / permease component CHD54_RS01270 PF11862 Domain of unknown function (DUF3382) CHD54_RS01270 PF02653 Branched-chain amino acid transport system / permease component CHD54_RS01275 PF12399 Branched-chain amino acid ATP-binding cassette transporter CHD54_RS01275 PF00005 ABC transporter CHD54_RS01280 PF00005 ABC transporter CHD54_RS01285 PF13416 Bacterial extracellular solute-binding protein CHD54_RS01290 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS01295 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS01300 PF17912 MalK OB fold domain CHD54_RS01300 PF00005 ABC transporter CHD54_RS01305 PF03009 Glycerophosphoryl diester phosphodiesterase family CHD54_RS01310 PF10956 Protein of unknown function (DUF2756) CHD54_RS01325 PF15567 Immunity protein 35 CHD54_RS01330 PF05638 Type VI secretion system effector, Hcp CHD54_RS01335 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CHD54_RS01335 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CHD54_RS01340 PF17954 Quercetinase C-terminal cupin domain CHD54_RS01340 PF02678 Pirin CHD54_RS01345 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CHD54_RS01345 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS01350 PF01202 Shikimate kinase CHD54_RS01355 PF02447 GntP family permease CHD54_RS01365 PF01118 Semialdehyde dehydrogenase, NAD binding domain CHD54_RS01365 PF02774 Semialdehyde dehydrogenase, dimerisation domain CHD54_RS01370 PF00128 Alpha amylase, catalytic domain CHD54_RS01370 PF02806 Alpha amylase, C-terminal all-beta domain CHD54_RS01370 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CHD54_RS01375 PF18390 Glycogen debranching enzyme C-terminal domain CHD54_RS01375 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CHD54_RS01375 PF00128 Alpha amylase, catalytic domain CHD54_RS01380 PF00483 Nucleotidyl transferase CHD54_RS01385 PF08323 Starch synthase catalytic domain CHD54_RS01385 PF00534 Glycosyl transferases group 1 CHD54_RS01390 PF00343 Carbohydrate phosphorylase CHD54_RS01395 PF01266 FAD dependent oxidoreductase CHD54_RS01395 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CHD54_RS01400 PF00581 Rhodanese-like domain CHD54_RS01405 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CHD54_RS01405 PF01694 Rhomboid family CHD54_RS01410 PF00455 DeoR C terminal sensor domain CHD54_RS01410 PF08220 DeoR-like helix-turn-helix domain CHD54_RS01415 PF17874 MalT-like TPR region CHD54_RS01415 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS01420 PF00343 Carbohydrate phosphorylase CHD54_RS01425 PF02446 4-alpha-glucanotransferase CHD54_RS01430 PF02447 GntP family permease CHD54_RS01435 PF01106 NifU-like domain CHD54_RS01435 PF01521 Iron-sulphur cluster biosynthesis CHD54_RS01440 PF00156 Phosphoribosyl transferase domain CHD54_RS01445 PF00561 alpha/beta hydrolase fold CHD54_RS01455 PF09012 FeoC like transcriptional regulator CHD54_RS01460 PF17910 FeoB cytosolic helical domain CHD54_RS01460 PF07664 Ferrous iron transport protein B C terminus CHD54_RS01460 PF02421 Ferrous iron transport protein B CHD54_RS01460 PF07670 Nucleoside recognition CHD54_RS01465 PF04023 FeoA domain CHD54_RS01470 PF16921 Tex protein YqgF-like domain CHD54_RS01470 PF17674 HHH domain CHD54_RS01470 PF00575 S1 RNA binding domain CHD54_RS01470 PF09371 Tex-like protein N-terminal domain CHD54_RS01475 PF03449 Transcription elongation factor, N-terminal CHD54_RS01475 PF01272 Transcription elongation factor, GreA/GreB, C-term CHD54_RS01480 PF00072 Response regulator receiver domain CHD54_RS01480 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS01485 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS01485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS01485 PF00672 HAMP domain CHD54_RS01490 PF01293 Phosphoenolpyruvate carboxykinase CHD54_RS01495 PF13687 Domain of unknown function (DUF4153) CHD54_RS01500 PF01430 Hsp33 protein CHD54_RS01505 PF01479 S4 domain CHD54_RS01510 PF13419 Haloacid dehalogenase-like hydrolase CHD54_RS01515 PF07095 Intracellular growth attenuator protein IgaA CHD54_RS01520 PF00293 NUDIX domain CHD54_RS01525 PF00912 Transglycosylase CHD54_RS01525 PF00905 Penicillin binding protein transpeptidase domain CHD54_RS01525 PF17092 Penicillin-binding protein OB-like domain CHD54_RS01535 PF05137 Fimbrial assembly protein (PilN) CHD54_RS01545 PF10748 DNA utilization proteins HofP CHD54_RS01550 PF00263 Bacterial type II and III secretion system protein CHD54_RS01550 PF03958 Bacterial type II/III secretion system short domain CHD54_RS01560 PF01202 Shikimate kinase CHD54_RS01565 PF01761 3-dehydroquinate synthase CHD54_RS01570 PF05036 Sporulation related domain CHD54_RS01575 PF02086 D12 class N6 adenine-specific DNA methyltransferase CHD54_RS01580 PF00834 Ribulose-phosphate 3 epimerase family CHD54_RS01585 PF13419 Haloacid dehalogenase-like hydrolase CHD54_RS01590 PF00579 tRNA synthetases class I (W and Y) CHD54_RS01595 PF13978 Protein of unknown function (DUF4223) CHD54_RS01605 PF10414 Sirohaem synthase dimerisation region CHD54_RS01605 PF14824 Sirohaem biosynthesis protein central CHD54_RS01605 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CHD54_RS01610 PF01226 Formate/nitrite transporter CHD54_RS01615 PF13806 Rieske-like [2Fe-2S] domain CHD54_RS01620 PF04324 BFD-like [2Fe-2S] binding domain CHD54_RS01620 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS01620 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CHD54_RS01620 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CHD54_RS01620 PF18267 Rubredoxin NAD+ reductase C-terminal domain CHD54_RS01625 PF07690 Major Facilitator Superfamily CHD54_RS01630 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CHD54_RS01635 PF10832 Protein of unknown function (DUF2559) CHD54_RS01640 PF02661 Fic/DOC family CHD54_RS01645 PF00117 Glutamine amidotransferase class-I CHD54_RS01650 PF00202 Aminotransferase class-III CHD54_RS01655 PF12805 FUSC-like inner membrane protein yccS CHD54_RS01660 PF13545 Crp-like helix-turn-helix domain CHD54_RS01660 PF00027 Cyclic nucleotide-binding domain CHD54_RS01665 PF02566 OsmC-like protein CHD54_RS01670 PF00485 Phosphoribulokinase / Uridine kinase family CHD54_RS01675 PF06794 Uncharacterised protein family (UPF0270) CHD54_RS01680 PF00561 alpha/beta hydrolase fold CHD54_RS01685 PF08803 Putative mono-oxygenase ydhR CHD54_RS01690 PF12848 ABC transporter CHD54_RS01690 PF00005 ABC transporter CHD54_RS01695 PF02525 Flavodoxin-like fold CHD54_RS01700 PF02254 TrkA-N domain CHD54_RS01700 PF00999 Sodium/hydrogen exchanger family CHD54_RS01705 PF09526 Probable metal-binding protein (DUF2387) CHD54_RS01710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHD54_RS01715 PF04102 SlyX CHD54_RS01720 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CHD54_RS01720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHD54_RS01725 PF13309 HTH domain CHD54_RS01725 PF08348 YheO-like PAS domain CHD54_RS01730 PF02635 DsrE/DsrF-like family CHD54_RS01735 PF02635 DsrE/DsrF-like family CHD54_RS01740 PF04077 DsrH like protein CHD54_RS01745 PF00164 Ribosomal protein S12/S23 CHD54_RS01750 PF00177 Ribosomal protein S7p/S5e CHD54_RS01755 PF14492 Elongation Factor G, domain II CHD54_RS01755 PF00009 Elongation factor Tu GTP binding domain CHD54_RS01755 PF03144 Elongation factor Tu domain 2 CHD54_RS01755 PF03764 Elongation factor G, domain IV CHD54_RS01755 PF00679 Elongation factor G C-terminus CHD54_RS01760 PF03143 Elongation factor Tu C-terminal domain CHD54_RS01760 PF03144 Elongation factor Tu domain 2 CHD54_RS01760 PF00009 Elongation factor Tu GTP binding domain CHD54_RS01765 PF04324 BFD-like [2Fe-2S] binding domain CHD54_RS01770 PF00210 Ferritin-like domain CHD54_RS01775 PF01478 Type IV leader peptidase family CHD54_RS01780 PF00338 Ribosomal protein S10p/S20e CHD54_RS01785 PF00297 Ribosomal protein L3 CHD54_RS01790 PF00573 Ribosomal protein L4/L1 family CHD54_RS01795 PF00276 Ribosomal protein L23 CHD54_RS01800 PF03947 Ribosomal Proteins L2, C-terminal domain CHD54_RS01800 PF00181 Ribosomal Proteins L2, RNA binding domain CHD54_RS01805 PF00203 Ribosomal protein S19 CHD54_RS01810 PF00237 Ribosomal protein L22p/L17e CHD54_RS01815 PF07650 KH domain CHD54_RS01815 PF00189 Ribosomal protein S3, C-terminal domain CHD54_RS01820 PF00252 Ribosomal protein L16p/L10e CHD54_RS01825 PF00831 Ribosomal L29 protein CHD54_RS01830 PF00366 Ribosomal protein S17 CHD54_RS01835 PF00238 Ribosomal protein L14p/L23e CHD54_RS01840 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CHD54_RS01840 PF00467 KOW motif CHD54_RS01845 PF00281 Ribosomal protein L5 CHD54_RS01845 PF00673 ribosomal L5P family C-terminus CHD54_RS01850 PF00253 Ribosomal protein S14p/S29e CHD54_RS01855 PF00410 Ribosomal protein S8 CHD54_RS01860 PF00347 Ribosomal protein L6 CHD54_RS01865 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CHD54_RS01870 PF00333 Ribosomal protein S5, N-terminal domain CHD54_RS01870 PF03719 Ribosomal protein S5, C-terminal domain CHD54_RS01875 PF00327 Ribosomal protein L30p/L7e CHD54_RS01880 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CHD54_RS01885 PF00344 SecY translocase CHD54_RS01890 PF00444 Ribosomal protein L36 CHD54_RS01895 PF00416 Ribosomal protein S13/S18 CHD54_RS01900 PF00411 Ribosomal protein S11 CHD54_RS01905 PF01479 S4 domain CHD54_RS01905 PF00163 Ribosomal protein S4/S9 N-terminal domain CHD54_RS01910 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CHD54_RS01910 PF01000 RNA polymerase Rpb3/RpoA insert domain CHD54_RS01910 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CHD54_RS01915 PF01196 Ribosomal protein L17 CHD54_RS01920 PF09350 Domain of unknown function (DUF1992) CHD54_RS01925 PF13411 MerR HTH family regulatory protein CHD54_RS01930 PF03889 Alternative ribosome-rescue factor A CHD54_RS01940 PF01741 Large-conductance mechanosensitive channel, MscL CHD54_RS01945 PF02080 TrkA-C domain CHD54_RS01945 PF02254 TrkA-N domain CHD54_RS01950 PF01189 16S rRNA methyltransferase RsmB/F CHD54_RS01950 PF01029 NusB family CHD54_RS01955 PF00551 Formyl transferase CHD54_RS01955 PF02911 Formyl transferase, C-terminal domain CHD54_RS01960 PF01327 Polypeptide deformylase CHD54_RS01965 PF17782 DprA winged helix domain CHD54_RS01965 PF02481 DNA recombination-mediator protein A CHD54_RS01970 PF04361 Protein of unknown function (DUF494) CHD54_RS01975 PF01396 Topoisomerase DNA binding C4 zinc finger CHD54_RS01980 PF01300 Telomere recombination CHD54_RS01985 PF01488 Shikimate / quinate 5-dehydrogenase CHD54_RS01985 PF08501 Shikimate dehydrogenase substrate binding domain CHD54_RS01985 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CHD54_RS01990 PF07369 Protein of unknown function (DUF1488) CHD54_RS01995 PF00132 Bacterial transferase hexapeptide (six repeats) CHD54_RS02040 PF00873 AcrB/AcrD/AcrF family CHD54_RS02045 PF00529 HlyD membrane-fusion protein of T1SS CHD54_RS02045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHD54_RS02050 PF00440 Bacterial regulatory proteins, tetR family CHD54_RS02050 PF08361 MAATS-type transcriptional repressor, C-terminal region CHD54_RS02055 PF00563 EAL domain CHD54_RS02055 PF03707 Bacterial signalling protein N terminal repeat CHD54_RS02055 PF00990 Diguanylate cyclase, GGDEF domain CHD54_RS02060 PF10831 Protein of unknown function (DUF2556) CHD54_RS02065 PF01555 DNA methylase CHD54_RS02070 PF02954 Bacterial regulatory protein, Fis family CHD54_RS02075 PF01207 Dihydrouridine synthase (Dus) CHD54_RS02090 PF00474 Sodium:solute symporter family CHD54_RS02095 PF06196 Protein of unknown function (DUF997) CHD54_RS02100 PF02785 Biotin carboxylase C-terminal domain CHD54_RS02100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHD54_RS02100 PF00289 Biotin carboxylase, N-terminal domain CHD54_RS02105 PF00364 Biotin-requiring enzyme CHD54_RS02110 PF01794 Ferric reductase like transmembrane component CHD54_RS02115 PF00174 Oxidoreductase molybdopterin binding domain CHD54_RS02120 PF00107 Zinc-binding dehydrogenase CHD54_RS02120 PF08240 Alcohol dehydrogenase GroES-like domain CHD54_RS02125 PF17157 Gammaproteobacterial periplasmic sensor domain CHD54_RS02125 PF00563 EAL domain CHD54_RS02125 PF00990 Diguanylate cyclase, GGDEF domain CHD54_RS02140 PF04085 rod shape-determining protein MreC CHD54_RS02145 PF04093 rod shape-determining protein MreD CHD54_RS02150 PF02545 Maf-like protein CHD54_RS02155 PF10150 Ribonuclease E/G family CHD54_RS02155 PF00575 S1 RNA binding domain CHD54_RS02160 PF13502 AsmA-like C-terminal region CHD54_RS02160 PF13116 Protein of unknown function CHD54_RS02165 PF01523 Putative modulator of DNA gyrase CHD54_RS02170 PF03797 Autotransporter beta-domain CHD54_RS02175 PF03466 LysR substrate binding domain CHD54_RS02175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS02180 PF07869 Protein of unknown function (DUF1656) CHD54_RS02185 PF13533 Biotin-lipoyl like CHD54_RS02190 PF04632 Fusaric acid resistance protein family CHD54_RS02195 PF01337 Barstar (barnase inhibitor) CHD54_RS02200 PF07338 Protein of unknown function (DUF1471) CHD54_RS02205 PF07338 Protein of unknown function (DUF1471) CHD54_RS02210 PF02863 Arginine repressor, C-terminal domain CHD54_RS02210 PF01316 Arginine repressor, DNA binding domain CHD54_RS02215 PF00056 lactate/malate dehydrogenase, NAD binding domain CHD54_RS02215 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CHD54_RS02220 PF13180 PDZ domain CHD54_RS02225 PF13180 PDZ domain CHD54_RS02225 PF00595 PDZ domain CHD54_RS02230 PF06295 Protein of unknown function (DUF1043) CHD54_RS02235 PF03969 AFG1-like ATPase CHD54_RS02240 PF00572 Ribosomal protein L13 CHD54_RS02245 PF00380 Ribosomal protein S9/S16 CHD54_RS02250 PF02798 Glutathione S-transferase, N-terminal domain CHD54_RS02250 PF00043 Glutathione S-transferase, C-terminal domain CHD54_RS02255 PF04386 Stringent starvation protein B CHD54_RS02260 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS02260 PF07729 FCD domain CHD54_RS02265 PF00701 Dihydrodipicolinate synthetase family CHD54_RS02270 PF07690 Major Facilitator Superfamily CHD54_RS02275 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CHD54_RS02280 PF00480 ROK family CHD54_RS02285 PF04074 YhcH/YjgK/YiaL CHD54_RS02290 PF07969 Amidohydrolase family CHD54_RS02295 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CHD54_RS02305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS02305 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CHD54_RS02310 PF00310 Glutamine amidotransferases class-II CHD54_RS02310 PF01493 GXGXG motif CHD54_RS02310 PF01645 Conserved region in glutamate synthase CHD54_RS02310 PF04898 Glutamate synthase central domain CHD54_RS02315 PF16199 Radical_SAM C-terminal domain CHD54_RS02315 PF04055 Radical SAM superfamily CHD54_RS02320 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS02320 PF00989 PAS fold CHD54_RS02320 PF01627 Hpt domain CHD54_RS02320 PF00072 Response regulator receiver domain CHD54_RS02320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS02320 PF18415 Histidine kinase receptor ArcB trans-membrane domain CHD54_RS02330 PF00912 Transglycosylase CHD54_RS02335 PF10707 PhoP regulatory network protein YrbL CHD54_RS02340 PF00381 PTS HPr component phosphorylation site CHD54_RS02345 PF03668 P-loop ATPase protein family CHD54_RS02350 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHD54_RS02355 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CHD54_RS02360 PF04552 Sigma-54, DNA binding domain CHD54_RS02360 PF04963 Sigma-54 factor, core binding domain CHD54_RS02360 PF00309 Sigma-54 factor, Activator interacting domain (AID) CHD54_RS02365 PF00005 ABC transporter CHD54_RS02365 PF12399 Branched-chain amino acid ATP-binding cassette transporter CHD54_RS02370 PF03968 OstA-like protein CHD54_RS02375 PF06835 Lipopolysaccharide-assembly, LptC-related CHD54_RS02385 PF01380 SIS domain CHD54_RS02385 PF00571 CBS domain CHD54_RS02390 PF01699 Sodium/calcium exchanger protein CHD54_RS02395 PF00005 ABC transporter CHD54_RS02400 PF02405 Permease MlaE CHD54_RS02405 PF02470 MlaD protein CHD54_RS02410 PF05494 MlaC protein CHD54_RS02415 PF13466 STAS domain CHD54_RS02420 PF01722 BolA-like protein CHD54_RS02425 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CHD54_RS02430 PF13693 Winged helix-turn-helix DNA-binding CHD54_RS02435 PF00348 Polyprenyl synthetase CHD54_RS02440 PF00829 Ribosomal prokaryotic L21 protein CHD54_RS02445 PF01016 Ribosomal L27 protein CHD54_RS02450 PF00892 EamA-like transporter family CHD54_RS02455 PF01018 GTP1/OBG CHD54_RS02455 PF01926 50S ribosome-binding GTPase CHD54_RS02460 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CHD54_RS02465 PF03449 Transcription elongation factor, N-terminal CHD54_RS02465 PF01272 Transcription elongation factor, GreA/GreB, C-term CHD54_RS02470 PF01985 CRS1 / YhbY (CRM) domain CHD54_RS02475 PF01728 FtsJ-like methyltransferase CHD54_RS02480 PF06480 FtsH Extracellular CHD54_RS02480 PF00004 ATPase family associated with various cellular activities (AAA) CHD54_RS02480 PF17862 AAA+ lid domain CHD54_RS02480 PF01434 Peptidase family M41 CHD54_RS02485 PF00809 Pterin binding enzyme CHD54_RS02490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CHD54_RS02490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CHD54_RS02490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CHD54_RS02490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHD54_RS02495 PF03840 Preprotein translocase SecG subunit CHD54_RS02505 PF00764 Arginosuccinate synthase CHD54_RS02515 PF17384 RimP C-terminal SH3 domain CHD54_RS02515 PF02576 RimP N-terminal domain CHD54_RS02520 PF08529 NusA N-terminal domain CHD54_RS02520 PF13184 NusA-like KH domain CHD54_RS02525 PF04760 Translation initiation factor IF-2, N-terminal region CHD54_RS02525 PF08364 Bacterial translation initiation factor IF-2 associated region CHD54_RS02525 PF11987 Translation-initiation factor 2 CHD54_RS02525 PF00009 Elongation factor Tu GTP binding domain CHD54_RS02530 PF02033 Ribosome-binding factor A CHD54_RS02535 PF09157 Pseudouridine synthase II TruB, C-terminal CHD54_RS02535 PF16198 tRNA pseudouridylate synthase B C-terminal domain CHD54_RS02535 PF01509 TruB family pseudouridylate synthase (N terminal domain) CHD54_RS02540 PF00312 Ribosomal protein S15 CHD54_RS02545 PF00013 KH domain CHD54_RS02545 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CHD54_RS02545 PF01138 3' exoribonuclease family, domain 1 CHD54_RS02545 PF03725 3' exoribonuclease family, domain 2 CHD54_RS02545 PF00575 S1 RNA binding domain CHD54_RS02550 PF13181 Tetratricopeptide repeat CHD54_RS02550 PF07719 Tetratricopeptide repeat CHD54_RS02560 PF00270 DEAD/DEAH box helicase CHD54_RS02560 PF03880 DbpA RNA binding domain CHD54_RS02560 PF12343 Cold shock protein DEAD box A CHD54_RS02560 PF00271 Helicase conserved C-terminal domain CHD54_RS02565 PF03222 Tryptophan/tyrosine permease family CHD54_RS02570 PF00296 Luciferase-like monooxygenase CHD54_RS02575 PF01136 Peptidase family U32 CHD54_RS02580 PF01136 Peptidase family U32 CHD54_RS02585 PF02036 SCP-2 sterol transfer family CHD54_RS02590 PF13508 Acetyltransferase (GNAT) domain CHD54_RS02595 PF01541 GIY-YIG catalytic domain CHD54_RS02605 PF01965 DJ-1/PfpI family CHD54_RS02610 PF13460 NAD(P)H-binding CHD54_RS02615 PF04972 BON domain CHD54_RS02620 PF13580 SIS domain CHD54_RS02625 PF02021 Uncharacterised protein family UPF0102 CHD54_RS02630 PF04348 LppC putative lipoprotein CHD54_RS02635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CHD54_RS02640 PF01116 Fructose-bisphosphate aldolase class-II CHD54_RS02645 PF01380 SIS domain CHD54_RS02650 PF01979 Amidohydrolase family CHD54_RS02655 PF08013 Tagatose 6 phosphate kinase CHD54_RS02660 PF08220 DeoR-like helix-turn-helix domain CHD54_RS02660 PF00455 DeoR C terminal sensor domain CHD54_RS02680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS02680 PF03466 LysR substrate binding domain CHD54_RS02685 PF00291 Pyridoxal-phosphate dependent enzyme CHD54_RS02690 PF03222 Tryptophan/tyrosine permease family CHD54_RS02695 PF00871 Acetokinase family CHD54_RS02700 PF02901 Pyruvate formate lyase-like CHD54_RS02700 PF01228 Glycine radical CHD54_RS02705 PF03313 Serine dehydratase alpha chain CHD54_RS02705 PF03315 Serine dehydratase beta chain CHD54_RS02715 PF03313 Serine dehydratase alpha chain CHD54_RS02725 PF02678 Pirin CHD54_RS02725 PF17954 Quercetinase C-terminal cupin domain CHD54_RS02730 PF03466 LysR substrate binding domain CHD54_RS02730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS02735 PF05656 Protein of unknown function (DUF805) CHD54_RS02740 PF13409 Glutathione S-transferase, N-terminal domain CHD54_RS02745 PF07681 DoxX CHD54_RS02750 PF13997 YqjK-like protein CHD54_RS02755 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CHD54_RS02760 PF05957 Bacterial protein of unknown function (DUF883) CHD54_RS02765 PF06476 Protein of unknown function (DUF1090) CHD54_RS02770 PF13721 SecD export protein N-terminal TM region CHD54_RS02775 PF09335 SNARE associated Golgi protein CHD54_RS02780 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS02780 PF07729 FCD domain CHD54_RS02785 PF07690 Major Facilitator Superfamily CHD54_RS02790 PF02614 Glucuronate isomerase CHD54_RS02795 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CHD54_RS02795 PF08666 SAF domain CHD54_RS02800 PF00375 Sodium:dicarboxylate symporter family CHD54_RS02805 PF03741 Integral membrane protein TerC family CHD54_RS02810 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CHD54_RS02820 PF01863 Protein of unknown function DUF45 CHD54_RS02825 PF05175 Methyltransferase small domain CHD54_RS02830 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS02830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CHD54_RS02835 PF00202 Aminotransferase class-III CHD54_RS02840 PF08447 PAS fold CHD54_RS02840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHD54_RS02845 PF00672 HAMP domain CHD54_RS02845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHD54_RS02845 PF02203 Tar ligand binding domain homologue CHD54_RS02850 PF03551 Transcriptional regulator PadR-like family CHD54_RS02855 PF04954 Siderophore-interacting protein CHD54_RS02855 PF08021 Siderophore-interacting FAD-binding domain CHD54_RS02875 PF03167 Uracil DNA glycosylase superfamily CHD54_RS02880 PF04539 Sigma-70 region 3 CHD54_RS02880 PF04545 Sigma-70, region 4 CHD54_RS02880 PF03979 Sigma-70 factor, region 1.1 CHD54_RS02880 PF00140 Sigma-70 factor, region 1.2 CHD54_RS02880 PF04546 Sigma-70, non-essential region CHD54_RS02880 PF04542 Sigma-70 region 2 CHD54_RS02885 PF01807 CHC2 zinc finger CHD54_RS02885 PF08278 DNA primase DnaG DnaB-binding CHD54_RS02885 PF08275 DNA primase catalytic core, N-terminal domain CHD54_RS02885 PF10410 DnaB-helicase binding domain of primase CHD54_RS02890 PF01165 Ribosomal protein S21 CHD54_RS02895 PF00814 Glycoprotease family CHD54_RS02905 PF00939 Sodium:sulfate symporter transmembrane region CHD54_RS02910 PF05683 Fumarase C-terminus CHD54_RS02920 PF03466 LysR substrate binding domain CHD54_RS02920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS02925 PF02660 Glycerol-3-phosphate acyltransferase CHD54_RS02930 PF02152 Dihydroneopterin aldolase CHD54_RS02935 PF02673 Bacitracin resistance protein BacA CHD54_RS02940 PF01743 Poly A polymerase head domain CHD54_RS02940 PF01966 HD domain CHD54_RS02940 PF12627 Probable RNA and SrmB- binding site of polymerase A CHD54_RS02945 PF08239 Bacterial SH3 domain CHD54_RS02950 PF01928 CYTH domain CHD54_RS02955 PF08335 GlnD PII-uridylyltransferase CHD54_RS02955 PF03710 Glutamate-ammonia ligase adenylyltransferase CHD54_RS02960 PF00294 pfkB family carbohydrate kinase CHD54_RS02960 PF01467 Cytidylyltransferase-like CHD54_RS02965 PF08971 Glycogen synthesis protein CHD54_RS02970 PF04380 Membrane fusogenic activity CHD54_RS02975 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CHD54_RS02980 PF02600 Disulfide bond formation protein DsbB CHD54_RS02985 PF01323 DSBA-like thioredoxin domain CHD54_RS02990 PF17425 Arylsulfotransferase Ig-like domain CHD54_RS02990 PF05935 Arylsulfotransferase (ASST) CHD54_RS02995 PF02535 ZIP Zinc transporter CHD54_RS03000 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CHD54_RS03005 PF03738 Glutathionylspermidine synthase preATP-grasp CHD54_RS03010 PF06693 Protein of unknown function (DUF1190) CHD54_RS03015 PF02321 Outer membrane efflux protein CHD54_RS03020 PF00293 NUDIX domain CHD54_RS03025 PF06853 Protein of unknown function (DUF1249) CHD54_RS03030 PF00149 Calcineurin-like phosphoesterase CHD54_RS03035 PF05728 Uncharacterised protein family (UPF0227) CHD54_RS03040 PF00986 DNA gyrase B subunit, carboxyl terminus CHD54_RS03040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS03040 PF00204 DNA gyrase B CHD54_RS03040 PF01751 Toprim domain CHD54_RS03045 PF03992 Antibiotic biosynthesis monooxygenase CHD54_RS03050 PF02525 Flavodoxin-like fold CHD54_RS03055 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS03055 PF08521 Two-component sensor kinase N-terminal CHD54_RS03055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS03060 PF00072 Response regulator receiver domain CHD54_RS03060 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS03065 PF04076 Bacterial OB fold (BOF) protein CHD54_RS03085 PF05638 Type VI secretion system effector, Hcp CHD54_RS03090 PF00521 DNA gyrase/topoisomerase IV, subunit A CHD54_RS03090 PF03989 DNA gyrase C-terminal domain, beta-propeller CHD54_RS03095 PF01553 Acyltransferase CHD54_RS03100 PF07731 Multicopper oxidase CHD54_RS03100 PF07732 Multicopper oxidase CHD54_RS03100 PF00394 Multicopper oxidase CHD54_RS03105 PF08497 Radical SAM N-terminal CHD54_RS03105 PF11842 Domain of unknown function (DUF3362) CHD54_RS03105 PF04055 Radical SAM superfamily CHD54_RS03115 PF00939 Sodium:sulfate symporter transmembrane region CHD54_RS03120 PF00248 Aldo/keto reductase family CHD54_RS03125 PF00465 Iron-containing alcohol dehydrogenase CHD54_RS03130 PF12833 Helix-turn-helix domain CHD54_RS03130 PF06719 AraC-type transcriptional regulator N-terminus CHD54_RS03135 PF09335 SNARE associated Golgi protein CHD54_RS03140 PF01053 Cys/Met metabolism PLP-dependent enzyme CHD54_RS03145 PF01618 MotA/TolQ/ExbB proton channel family CHD54_RS03150 PF02472 Biopolymer transport protein ExbD/TolR CHD54_RS03175 PF03350 Uncharacterized protein family, UPF0114 CHD54_RS03180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHD54_RS03180 PF02203 Tar ligand binding domain homologue CHD54_RS03180 PF00672 HAMP domain CHD54_RS03185 PF11115 Protein of unknown function (DUF2623) CHD54_RS03190 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CHD54_RS03190 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CHD54_RS03195 PF13247 4Fe-4S dicluster domain CHD54_RS03200 PF03916 Polysulphide reductase, NrfD CHD54_RS03205 PF00374 Nickel-dependent hydrogenase CHD54_RS03210 PF01750 Hydrogenase maturation protease CHD54_RS03215 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CHD54_RS03220 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CHD54_RS03225 PF01455 HupF/HypC family CHD54_RS03230 PF01497 Periplasmic binding protein CHD54_RS03240 PF02798 Glutathione S-transferase, N-terminal domain CHD54_RS03245 PF03738 Glutathionylspermidine synthase preATP-grasp CHD54_RS03245 PF05257 CHAP domain CHD54_RS03265 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CHD54_RS03265 PF04616 Glycosyl hydrolases family 43 CHD54_RS03275 PF02614 Glucuronate isomerase CHD54_RS03280 PF08125 Mannitol dehydrogenase C-terminal domain CHD54_RS03280 PF01232 Mannitol dehydrogenase Rossmann domain CHD54_RS03285 PF03786 D-mannonate dehydratase (UxuA) CHD54_RS03295 PF07690 Major Facilitator Superfamily CHD54_RS03305 PF01522 Polysaccharide deacetylase CHD54_RS03310 PF00171 Aldehyde dehydrogenase family CHD54_RS03315 PF01266 FAD dependent oxidoreductase CHD54_RS03325 PF13520 Amino acid permease CHD54_RS03335 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS03340 PF04055 Radical SAM superfamily CHD54_RS03345 PF00884 Sulfatase CHD54_RS03350 PF03466 LysR substrate binding domain CHD54_RS03350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS03355 PF03328 HpcH/HpaI aldolase/citrate lyase family CHD54_RS03360 PF01575 MaoC like domain CHD54_RS03365 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CHD54_RS03365 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CHD54_RS03370 PF03527 RHS protein CHD54_RS03370 PF05593 RHS Repeat CHD54_RS03390 PF13358 DDE superfamily endonuclease CHD54_RS03390 PF13592 Winged helix-turn helix CHD54_RS03410 PF00182 Chitinase class I CHD54_RS03430 PF05638 Type VI secretion system effector, Hcp CHD54_RS03455 PF04474 Protein of unknown function (DUF554) CHD54_RS03460 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CHD54_RS03460 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CHD54_RS03460 PF01276 Orn/Lys/Arg decarboxylase, major domain CHD54_RS03470 PF01464 Transglycosylase SLT domain CHD54_RS03470 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CHD54_RS03475 PF04362 Bacterial Fe(2+) trafficking CHD54_RS03480 PF00730 HhH-GPD superfamily base excision DNA repair protein CHD54_RS03480 PF00633 Helix-hairpin-helix motif CHD54_RS03480 PF14815 NUDIX domain CHD54_RS03485 PF02390 Putative methyltransferase CHD54_RS03490 PF04320 Protein with unknown function (DUF469) CHD54_RS03495 PF11101 Protein of unknown function (DUF2884) CHD54_RS03500 PF17763 Glutaminase/Asparaginase C-terminal domain CHD54_RS03500 PF00710 Asparaginase, N-terminal CHD54_RS03505 PF04055 Radical SAM superfamily CHD54_RS03505 PF06969 HemN C-terminal domain CHD54_RS03510 PF01725 Ham1 family CHD54_RS03515 PF02594 Uncharacterised ACR, YggU family COG1872 CHD54_RS03520 PF02325 YGGT family CHD54_RS03525 PF01168 Alanine racemase, N-terminal domain CHD54_RS03530 PF00437 Type II/IV secretion system protein CHD54_RS03540 PF03652 Holliday junction resolvase CHD54_RS03545 PF02622 Uncharacterized ACR, COG1678 CHD54_RS03550 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CHD54_RS03550 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CHD54_RS03555 PF04452 RNA methyltransferase CHD54_RS03560 PF04231 Endonuclease I CHD54_RS03565 PF10263 SprT-like family CHD54_RS03565 PF17283 SprT-like zinc ribbon domain CHD54_RS03570 PF00083 Sugar (and other) transporter CHD54_RS03575 PF02773 S-adenosylmethionine synthetase, C-terminal domain CHD54_RS03575 PF02772 S-adenosylmethionine synthetase, central domain CHD54_RS03575 PF00438 S-adenosylmethionine synthetase, N-terminal domain CHD54_RS03585 PF17430 Uncharacterized YqgC-like CHD54_RS03590 PF11036 Virulence promoting factor CHD54_RS03595 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CHD54_RS03595 PF17944 Arginine decarboxylase C-terminal helical extension CHD54_RS03595 PF17810 Arginine decarboxylase helical bundle domain CHD54_RS03600 PF00491 Arginase family CHD54_RS03605 PF01435 Peptidase family M48 CHD54_RS03610 PF02780 Transketolase, C-terminal domain CHD54_RS03610 PF02779 Transketolase, pyrimidine binding domain CHD54_RS03610 PF00456 Transketolase, thiamine diphosphate binding domain CHD54_RS03615 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CHD54_RS03615 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CHD54_RS03635 PF00456 Transketolase, thiamine diphosphate binding domain CHD54_RS03640 PF02779 Transketolase, pyrimidine binding domain CHD54_RS03640 PF02780 Transketolase, C-terminal domain CHD54_RS03645 PF00005 ABC transporter CHD54_RS03650 PF00005 ABC transporter CHD54_RS03675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CHD54_RS03675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CHD54_RS03680 PF00162 Phosphoglycerate kinase CHD54_RS03685 PF01116 Fructose-bisphosphate aldolase class-II CHD54_RS03690 PF00924 Mechanosensitive ion channel CHD54_RS03690 PF05552 Conserved TM helix CHD54_RS03695 PF01810 LysE type translocator CHD54_RS03700 PF04402 Protein of unknown function (DUF541) CHD54_RS03705 PF03466 LysR substrate binding domain CHD54_RS03705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS03710 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CHD54_RS03710 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CHD54_RS03715 PF00378 Enoyl-CoA hydratase/isomerase CHD54_RS03725 PF01642 Methylmalonyl-CoA mutase CHD54_RS03725 PF02310 B12 binding domain CHD54_RS03735 PF03466 LysR substrate binding domain CHD54_RS03735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS03740 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CHD54_RS03745 PF01842 ACT domain CHD54_RS03745 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHD54_RS03745 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHD54_RS03750 PF01812 5-formyltetrahydrofolate cyclo-ligase family CHD54_RS03760 PF05164 Cell division protein ZapA CHD54_RS03765 PF03695 Uncharacterised protein family (UPF0149) CHD54_RS03770 PF05195 Aminopeptidase P, N-terminal domain CHD54_RS03770 PF00557 Metallopeptidase family M24 CHD54_RS03775 PF01494 FAD binding domain CHD54_RS03780 PF01494 FAD binding domain CHD54_RS03785 PF01571 Aminomethyltransferase folate-binding domain CHD54_RS03785 PF08669 Glycine cleavage T-protein C-terminal barrel domain CHD54_RS03790 PF01597 Glycine cleavage H-protein CHD54_RS03795 PF02347 Glycine cleavage system P-protein CHD54_RS03800 PF00232 Glycosyl hydrolase family 1 CHD54_RS03805 PF04266 ASCH domain CHD54_RS03810 PF03006 Haemolysin-III related CHD54_RS03815 PF01571 Aminomethyltransferase folate-binding domain CHD54_RS03825 PF03937 Flavinator of succinate dehydrogenase CHD54_RS03830 PF07254 Membrane-bound toxin component of toxin-antitoxin system CHD54_RS03835 PF00258 Flavodoxin CHD54_RS03840 PF02899 Phage integrase, N-terminal SAM-like domain CHD54_RS03840 PF00589 Phage integrase family CHD54_RS03845 PF13098 Thioredoxin-like domain CHD54_RS03845 PF10411 Disulfide bond isomerase protein N-terminus CHD54_RS03850 PF01368 DHH family CHD54_RS03850 PF02272 DHHA1 domain CHD54_RS03850 PF17768 RecJ OB domain CHD54_RS03860 PF01336 OB-fold nucleic acid binding domain CHD54_RS03860 PF00152 tRNA synthetases class II (D, K and N) CHD54_RS03865 PF00293 NUDIX domain CHD54_RS03870 PF01551 Peptidase family M23 CHD54_RS03870 PF01476 LysM domain CHD54_RS03895 PF00080 Copper/zinc superoxide dismutase (SODC) CHD54_RS03900 PF03797 Autotransporter beta-domain CHD54_RS03900 PF03212 Pertactin CHD54_RS03900 PF16168 Adhesin of bacterial autotransporter system, probable stalk CHD54_RS03905 PF12833 Helix-turn-helix domain CHD54_RS03905 PF06445 GyrI-like small molecule binding domain CHD54_RS03915 PF03222 Tryptophan/tyrosine permease family CHD54_RS03925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS03925 PF03466 LysR substrate binding domain CHD54_RS03930 PF00108 Thiolase, N-terminal domain CHD54_RS03930 PF02803 Thiolase, C-terminal domain CHD54_RS03940 PF04962 KduI/IolB family CHD54_RS03950 PF00083 Sugar (and other) transporter CHD54_RS03955 PF01177 Asp/Glu/Hydantoin racemase CHD54_RS03960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS03960 PF03466 LysR substrate binding domain CHD54_RS03965 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CHD54_RS03965 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CHD54_RS03970 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS03975 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS03990 PF00501 AMP-binding enzyme CHD54_RS03990 PF01553 Acyltransferase CHD54_RS03995 PF07690 Major Facilitator Superfamily CHD54_RS04000 PF00248 Aldo/keto reductase family CHD54_RS04005 PF06004 Bacterial protein of unknown function (DUF903) CHD54_RS04010 PF03741 Integral membrane protein TerC family CHD54_RS04015 PF02976 DNA mismatch repair enzyme MutH CHD54_RS04020 PF00293 NUDIX domain CHD54_RS04025 PF00391 PEP-utilising enzyme, mobile domain CHD54_RS04025 PF02896 PEP-utilising enzyme, TIM barrel domain CHD54_RS04025 PF05524 PEP-utilising enzyme, N-terminal CHD54_RS04025 PF01590 GAF domain CHD54_RS04035 PF01790 Prolipoprotein diacylglyceryl transferase CHD54_RS04040 PF00303 Thymidylate synthase CHD54_RS04050 PF07963 Prokaryotic N-terminal methylation motif CHD54_RS04055 PF07963 Prokaryotic N-terminal methylation motif CHD54_RS04060 PF10713 Protein of unknown function (DUF2509) CHD54_RS04065 PF07963 Prokaryotic N-terminal methylation motif CHD54_RS04065 PF12528 Type II secretion prepilin peptidase dependent protein C CHD54_RS04070 PF17946 RecC C-terminal domain CHD54_RS04075 PF00675 Insulinase (Peptidase family M16) CHD54_RS04075 PF16187 Middle or third domain of peptidase_M16 CHD54_RS04075 PF05193 Peptidase M16 inactive domain CHD54_RS04080 PF00580 UvrD/REP helicase N-terminal domain CHD54_RS04080 PF12705 PD-(D/E)XK nuclease superfamily CHD54_RS04080 PF13361 UvrD-like helicase C-terminal domain CHD54_RS04085 PF13538 UvrD-like helicase C-terminal domain CHD54_RS04090 PF00696 Amino acid kinase family CHD54_RS04090 PF00583 Acetyltransferase (GNAT) family CHD54_RS04095 PF11741 AMIN domain CHD54_RS04095 PF01520 N-acetylmuramoyl-L-alanine amidase CHD54_RS04110 PF06725 3D domain CHD54_RS04110 PF03562 MltA specific insert domain CHD54_RS04115 PF00899 ThiF family CHD54_RS04120 PF00892 EamA-like transporter family CHD54_RS04125 PF02657 Fe-S metabolism associated domain CHD54_RS04130 PF00266 Aminotransferase class-V CHD54_RS04135 PF06004 Bacterial protein of unknown function (DUF903) CHD54_RS04140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS04140 PF03466 LysR substrate binding domain CHD54_RS04145 PF04241 Protein of unknown function (DUF423) CHD54_RS04150 PF18125 RlmM ferredoxin-like domain CHD54_RS04150 PF01728 FtsJ-like methyltransferase CHD54_RS04155 PF00455 DeoR C terminal sensor domain CHD54_RS04155 PF08220 DeoR-like helix-turn-helix domain CHD54_RS04160 PF05025 RbsD / FucU transport protein family CHD54_RS04165 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CHD54_RS04165 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CHD54_RS04170 PF07882 L-fucose isomerase, second N-terminal domain CHD54_RS04170 PF07881 L-fucose isomerase, first N-terminal domain CHD54_RS04170 PF02952 L-fucose isomerase, C-terminal domain CHD54_RS04175 PF07690 Major Facilitator Superfamily CHD54_RS04180 PF00596 Class II Aldolase and Adducin N-terminal domain CHD54_RS04185 PF00465 Iron-containing alcohol dehydrogenase CHD54_RS04190 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CHD54_RS04190 PF01367 5'-3' exonuclease, C-terminal SAM fold CHD54_RS04195 PF03313 Serine dehydratase alpha chain CHD54_RS04195 PF03315 Serine dehydratase beta chain CHD54_RS04205 PF03641 Possible lysine decarboxylase CHD54_RS04205 PF11892 Domain of unknown function (DUF3412) CHD54_RS04205 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CHD54_RS04210 PF14489 QueF-like protein CHD54_RS04210 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CHD54_RS04215 PF07348 Syd protein (SUKH-2) CHD54_RS04225 PF04287 tRNA pseudouridine synthase C CHD54_RS04230 PF00849 RNA pseudouridylate synthase CHD54_RS04235 PF00258 Flavodoxin CHD54_RS04245 PF00072 Response regulator receiver domain CHD54_RS04245 PF01627 Hpt domain CHD54_RS04245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS04245 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS04245 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHD54_RS04245 PF00672 HAMP domain CHD54_RS04250 PF01938 TRAM domain CHD54_RS04250 PF05958 tRNA (Uracil-5-)-methyltransferase CHD54_RS04255 PF04607 Region found in RelA / SpoT proteins CHD54_RS04255 PF13291 ACT domain CHD54_RS04255 PF02824 TGS domain CHD54_RS04260 PF03819 MazG nucleotide pyrophosphohydrolase domain CHD54_RS04265 PF00117 Glutamine amidotransferase class-I CHD54_RS04265 PF06418 CTP synthase N-terminus CHD54_RS04270 PF03952 Enolase, N-terminal domain CHD54_RS04270 PF00113 Enolase, C-terminal TIM barrel domain CHD54_RS04295 PF04055 Radical SAM superfamily CHD54_RS04300 PF01242 6-pyruvoyl tetrahydropterin synthase CHD54_RS04305 PF00667 FAD binding domain CHD54_RS04305 PF00258 Flavodoxin CHD54_RS04305 PF00175 Oxidoreductase NAD-binding domain CHD54_RS04310 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CHD54_RS04310 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CHD54_RS04320 PF01507 Phosphoadenosine phosphosulfate reductase family CHD54_RS04325 PF11047 Salmonella outer protein D CHD54_RS04335 PF04389 Peptidase family M28 CHD54_RS04340 PF01507 Phosphoadenosine phosphosulfate reductase family CHD54_RS04345 PF00009 Elongation factor Tu GTP binding domain CHD54_RS04355 PF12084 Protein of unknown function (DUF3561) CHD54_RS04360 PF04977 Septum formation initiator CHD54_RS04365 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CHD54_RS04370 PF02542 YgbB family CHD54_RS04375 PF01142 tRNA pseudouridine synthase D (TruD) CHD54_RS04380 PF01975 Survival protein SurE CHD54_RS04390 PF01551 Peptidase family M23 CHD54_RS04390 PF01476 LysM domain CHD54_RS04395 PF04539 Sigma-70 region 3 CHD54_RS04395 PF04545 Sigma-70, region 4 CHD54_RS04395 PF04542 Sigma-70 region 2 CHD54_RS04395 PF00140 Sigma-70 factor, region 1.2 CHD54_RS04405 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CHD54_RS04410 PF02441 Flavoprotein CHD54_RS04415 PF01047 MarR family CHD54_RS04420 PF00455 DeoR C terminal sensor domain CHD54_RS04420 PF08220 DeoR-like helix-turn-helix domain CHD54_RS04425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CHD54_RS04425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CHD54_RS04430 PF07005 Sugar-binding N-terminal domain CHD54_RS04430 PF17042 Nucleotide-binding C-terminal domain CHD54_RS04435 PF00596 Class II Aldolase and Adducin N-terminal domain CHD54_RS04440 PF01261 Xylose isomerase-like TIM barrel CHD54_RS04445 PF01370 NAD dependent epimerase/dehydratase family CHD54_RS04450 PF02447 GntP family permease CHD54_RS04455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS04455 PF03466 LysR substrate binding domain CHD54_RS04460 PF07690 Major Facilitator Superfamily CHD54_RS04470 PF05188 MutS domain II CHD54_RS04470 PF01624 MutS domain I CHD54_RS04470 PF05192 MutS domain III CHD54_RS04470 PF05190 MutS family domain IV CHD54_RS04470 PF00488 MutS domain V CHD54_RS04550 PF04741 InvH outer membrane lipoprotein CHD54_RS04555 PF12833 Helix-turn-helix domain CHD54_RS04560 PF03958 Bacterial type II/III secretion system short domain CHD54_RS04560 PF00263 Bacterial type II and III secretion system protein CHD54_RS04565 PF07201 HrpJ-like domain CHD54_RS04570 PF00771 FHIPEP family CHD54_RS04575 PF03519 Invasion protein B family CHD54_RS04580 PF18269 T3SS EscN ATPase C-terminal domain CHD54_RS04580 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHD54_RS04580 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHD54_RS04585 PF02090 Salmonella surface presentation of antigen gene type M protein CHD54_RS04590 PF02510 Surface presentation of antigens protein CHD54_RS04595 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CHD54_RS04600 PF00813 FliP family CHD54_RS04605 PF01313 Bacterial export proteins, family 3 CHD54_RS04610 PF01311 Bacterial export proteins, family 1 CHD54_RS04615 PF01312 FlhB HrpN YscU SpaS Family CHD54_RS04620 PF07720 Tetratricopeptide repeat CHD54_RS04625 PF04888 Secretion system effector C (SseC) like family CHD54_RS04625 PF16535 Type III cell invasion protein SipB CHD54_RS04630 PF09599 Salmonella-Shigella invasin protein C (IpaC_SipC) CHD54_RS04635 PF06511 Type III secretion systems tip complex components CHD54_RS04640 PF09052 SipA N-terminal domain CHD54_RS04645 PF00550 Phosphopantetheine attachment site CHD54_RS04655 PF05932 Tir chaperone protein (CesT) family CHD54_RS04660 PF03545 Yersinia virulence determinant (YopE) CHD54_RS04660 PF09119 SicP binding CHD54_RS04660 PF00102 Protein-tyrosine phosphatase CHD54_RS04670 PF01464 Transglycosylase SLT domain CHD54_RS04675 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS04680 PF12833 Helix-turn-helix domain CHD54_RS04685 PF09480 Type III secretion system protein PrgH-EprH (PrgH) CHD54_RS04690 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CHD54_RS04700 PF01514 Secretory protein of YscJ/FliF family CHD54_RS04705 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) CHD54_RS04735 PF00950 ABC 3 transport family CHD54_RS04740 PF00950 ABC 3 transport family CHD54_RS04745 PF00005 ABC transporter CHD54_RS04750 PF01297 Zinc-uptake complex component A periplasmic CHD54_RS04755 PF11756 Nitrous oxide-stimulated promoter CHD54_RS04760 PF02954 Bacterial regulatory protein, Fis family CHD54_RS04760 PF00158 Sigma-54 interaction domain CHD54_RS04760 PF01590 GAF domain CHD54_RS04765 PF00586 AIR synthase related protein, N-terminal domain CHD54_RS04765 PF02769 AIR synthase related protein, C-terminal domain CHD54_RS04770 PF01924 Hydrogenase formation hypA family CHD54_RS04775 PF01455 HupF/HypC family CHD54_RS04780 PF02492 CobW/HypB/UreG, nucleotide-binding domain CHD54_RS04785 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CHD54_RS04795 PF11046 Transcriptional repressor of hyc and hyp operons CHD54_RS04800 PF13247 4Fe-4S dicluster domain CHD54_RS04805 PF00361 Proton-conducting membrane transporter CHD54_RS04810 PF00146 NADH dehydrogenase CHD54_RS04815 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CHD54_RS04815 PF00374 Nickel-dependent hydrogenase CHD54_RS04815 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CHD54_RS04820 PF12838 4Fe-4S dicluster domain CHD54_RS04825 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CHD54_RS04830 PF07450 Formate hydrogenlyase maturation protein HycH CHD54_RS04835 PF01750 Hydrogenase maturation protease CHD54_RS04840 PF13247 4Fe-4S dicluster domain CHD54_RS04840 PF12800 4Fe-4S binding domain CHD54_RS04845 PF07503 HypF finger CHD54_RS04845 PF01300 Telomere recombination CHD54_RS04845 PF17788 HypF Kae1-like domain CHD54_RS04845 PF00708 Acylphosphatase CHD54_RS04850 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS04850 PF18113 Rubredoxin binding C-terminal domain CHD54_RS04855 PF00301 Rubredoxin CHD54_RS04855 PF00258 Flavodoxin CHD54_RS04855 PF00753 Metallo-beta-lactamase superfamily CHD54_RS04860 PF01590 GAF domain CHD54_RS04860 PF00158 Sigma-54 interaction domain CHD54_RS04865 PF01380 SIS domain CHD54_RS04865 PF00571 CBS domain CHD54_RS04870 PF08220 DeoR-like helix-turn-helix domain CHD54_RS04870 PF00455 DeoR C terminal sensor domain CHD54_RS04875 PF06923 Glucitol operon activator protein (GutM) CHD54_RS04880 PF00106 short chain dehydrogenase CHD54_RS04885 PF03829 PTS system glucitol/sorbitol-specific IIA component CHD54_RS04890 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CHD54_RS04890 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CHD54_RS04895 PF03608 PTS system enzyme II sorbitol-specific factor CHD54_RS04900 PF13406 Transglycosylase SLT domain CHD54_RS04905 PF02464 Competence-damaged protein CHD54_RS04910 PF00154 recA bacterial DNA recombination protein CHD54_RS04915 PF02631 RecX family CHD54_RS04925 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CHD54_RS04925 PF01411 tRNA synthetases class II (A) CHD54_RS04925 PF02272 DHHA1 domain CHD54_RS04930 PF02599 Global regulator protein family CHD54_RS04965 PF13419 Haloacid dehalogenase-like hydrolase CHD54_RS04970 PF09335 SNARE associated Golgi protein CHD54_RS04975 PF04262 Glutamate-cysteine ligase CHD54_RS04980 PF02664 S-Ribosylhomocysteinase (LuxS) CHD54_RS04985 PF07690 Major Facilitator Superfamily CHD54_RS04990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHD54_RS04990 PF00529 HlyD membrane-fusion protein of T1SS CHD54_RS04995 PF01047 MarR family CHD54_RS05000 PF07690 Major Facilitator Superfamily CHD54_RS05005 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CHD54_RS05010 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS05015 PF00571 CBS domain CHD54_RS05015 PF00005 ABC transporter CHD54_RS05025 PF00268 Ribonucleotide reductase, small chain CHD54_RS05030 PF08343 Ribonucleotide reductase N-terminal CHD54_RS05030 PF02867 Ribonucleotide reductase, barrel domain CHD54_RS05030 PF00317 Ribonucleotide reductase, all-alpha domain CHD54_RS05035 PF07972 NrdI Flavodoxin like CHD54_RS05040 PF00462 Glutaredoxin CHD54_RS05045 PF05957 Bacterial protein of unknown function (DUF883) CHD54_RS05050 PF09400 Protein of unknown function (DUF2002) CHD54_RS05055 PF06610 L-alanine exporter CHD54_RS05060 PF00816 H-NS histone family CHD54_RS05070 PF11127 Protein of unknown function (DUF2892) CHD54_RS05070 PF00581 Rhodanese-like domain CHD54_RS05075 PF01022 Bacterial regulatory protein, arsR family CHD54_RS05080 PF01679 Proteolipid membrane potential modulator CHD54_RS05090 PF01476 LysM domain CHD54_RS05090 PF04972 BON domain CHD54_RS05095 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS05095 PF07729 FCD domain CHD54_RS05100 PF00324 Amino acid permease CHD54_RS05105 PF00202 Aminotransferase class-III CHD54_RS05110 PF00171 Aldehyde dehydrogenase family CHD54_RS05115 PF01266 FAD dependent oxidoreductase CHD54_RS05120 PF08943 CsiD CHD54_RS05125 PF01970 Tripartite tricarboxylate transporter TctA family CHD54_RS05140 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS05140 PF00072 Response regulator receiver domain CHD54_RS05145 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS05145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS05150 PF03824 High-affinity nickel-transport protein CHD54_RS05160 PF04393 Protein of unknown function (DUF535) CHD54_RS05165 PF00805 Pentapeptide repeats (8 copies) CHD54_RS05175 PF00593 TonB dependent receptor CHD54_RS05175 PF07715 TonB-dependent Receptor Plug Domain CHD54_RS05180 PF00756 Putative esterase CHD54_RS05190 PF00005 ABC transporter CHD54_RS05190 PF00664 ABC transporter transmembrane region CHD54_RS05195 PF06722 Protein of unknown function (DUF1205) CHD54_RS05200 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CHD54_RS05205 PF01510 N-acetylmuramoyl-L-alanine amidase CHD54_RS05235 PF02899 Phage integrase, N-terminal SAM-like domain CHD54_RS05235 PF00589 Phage integrase family CHD54_RS05240 PF07022 Bacteriophage CI repressor helix-turn-helix domain CHD54_RS05240 PF16452 Bacteriophage CI repressor C-terminal domain CHD54_RS05250 PF06892 Phage regulatory protein CII (CP76) CHD54_RS05265 PF17282 Family of unknown function (DUF5347) CHD54_RS05280 PF02086 D12 class N6 adenine-specific DNA methyltransferase CHD54_RS05285 PF05840 Bacteriophage replication gene A protein (GPA) CHD54_RS05300 PF00145 C-5 cytosine-specific DNA methylase CHD54_RS05410 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CHD54_RS05425 PF02796 Helix-turn-helix domain of resolvase CHD54_RS05425 PF00239 Resolvase, N terminal domain CHD54_RS05465 PF04606 Ogr/Delta-like zinc finger CHD54_RS05475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHD54_RS05475 PF00529 HlyD membrane-fusion protein of T1SS CHD54_RS05480 PF00005 ABC transporter CHD54_RS05480 PF00664 ABC transporter transmembrane region CHD54_RS05495 PF01668 SmpB protein CHD54_RS05500 PF03364 Polyketide cyclase / dehydrase and lipid transport CHD54_RS05505 PF03658 RnfH family Ubiquitin CHD54_RS05510 PF04355 SmpA / OmlA family CHD54_RS05515 PF02463 RecF/RecN/SMC N terminal domain CHD54_RS05520 PF01513 ATP-NAD kinase CHD54_RS05530 PF01025 GrpE CHD54_RS05535 PF03471 Transporter associated domain CHD54_RS05535 PF01595 Cyclin M transmembrane N-terminal domain CHD54_RS05535 PF00571 CBS domain CHD54_RS05540 PF01578 Cytochrome C assembly protein CHD54_RS05550 PF00448 SRP54-type protein, GTPase domain CHD54_RS05550 PF02881 SRP54-type protein, helical bundle domain CHD54_RS05550 PF02978 Signal peptide binding domain CHD54_RS05555 PF00886 Ribosomal protein S16 CHD54_RS05560 PF05239 PRC-barrel domain CHD54_RS05560 PF01782 RimM N-terminal domain CHD54_RS05565 PF01746 tRNA (Guanine-1)-methyltransferase CHD54_RS05570 PF01245 Ribosomal protein L19 CHD54_RS05575 PF17152 Periplasmic sensor domain CHD54_RS05575 PF00990 Diguanylate cyclase, GGDEF domain CHD54_RS05580 PF13689 YfiR/HmsC-like CHD54_RS05585 PF00793 DAHP synthetase I family CHD54_RS05590 PF02153 Prephenate dehydrogenase CHD54_RS05590 PF01817 Chorismate mutase type II CHD54_RS05595 PF08450 SMP-30/Gluconolactonase/LRE-like region CHD54_RS05600 PF01817 Chorismate mutase type II CHD54_RS05600 PF00800 Prephenate dehydratase CHD54_RS05610 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CHD54_RS05615 PF13525 Outer membrane lipoprotein CHD54_RS05620 PF01479 S4 domain CHD54_RS05620 PF00849 RNA pseudouridylate synthase CHD54_RS05625 PF02578 Multi-copper polyphenol oxidoreductase laccase CHD54_RS05630 PF02861 Clp amino terminal domain, pathogenicity island component CHD54_RS05630 PF10431 C-terminal, D2-small domain, of ClpB protein CHD54_RS05630 PF00004 ATPase family associated with various cellular activities (AAA) CHD54_RS05630 PF07724 AAA domain (Cdc48 subfamily) CHD54_RS05630 PF17871 AAA lid domain CHD54_RS05665 PF00083 Sugar (and other) transporter CHD54_RS05670 PF10043 Predicted periplasmic lipoprotein (DUF2279) CHD54_RS05675 PF13091 PLD-like domain CHD54_RS05680 PF13380 CoA binding domain CHD54_RS05680 PF13607 Succinyl-CoA ligase like flavodoxin domain CHD54_RS05680 PF00583 Acetyltransferase (GNAT) family CHD54_RS05685 PF03942 DTW domain CHD54_RS05690 PF00085 Thioredoxin CHD54_RS05695 PF08032 RNA 2'-O ribose methyltransferase substrate binding CHD54_RS05695 PF00588 SpoU rRNA Methylase family CHD54_RS05700 PF03167 Uracil DNA glycosylase superfamily CHD54_RS05705 PF01228 Glycine radical CHD54_RS05710 PF00270 DEAD/DEAH box helicase CHD54_RS05710 PF00271 Helicase conserved C-terminal domain CHD54_RS05715 PF05175 Methyltransferase small domain CHD54_RS05720 PF02910 Fumarate reductase flavoprotein C-term CHD54_RS05720 PF00890 FAD binding domain CHD54_RS05735 PF08281 Sigma-70, region 4 CHD54_RS05735 PF04542 Sigma-70 region 2 CHD54_RS05740 PF03872 Anti sigma-E protein RseA, N-terminal domain CHD54_RS05740 PF03873 Anti sigma-E protein RseA, C-terminal domain CHD54_RS05745 PF17188 MucB/RseB C-terminal domain CHD54_RS05745 PF03888 MucB/RseB N-terminal domain CHD54_RS05760 PF03144 Elongation factor Tu domain 2 CHD54_RS05760 PF06421 GTP-binding protein LepA C-terminus CHD54_RS05760 PF00009 Elongation factor Tu GTP binding domain CHD54_RS05760 PF00679 Elongation factor G C-terminus CHD54_RS05765 PF10502 Signal peptidase, peptidase S26 CHD54_RS05770 PF00035 Double-stranded RNA binding motif CHD54_RS05770 PF14622 Ribonuclease-III-like CHD54_RS05775 PF01926 50S ribosome-binding GTPase CHD54_RS05775 PF07650 KH domain CHD54_RS05780 PF02565 Recombination protein O C terminal CHD54_RS05780 PF11967 Recombination protein O N terminal CHD54_RS05785 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CHD54_RS05790 PF01648 4'-phosphopantetheinyl transferase superfamily CHD54_RS05795 PF12838 4Fe-4S dicluster domain CHD54_RS05800 PF01380 SIS domain CHD54_RS05800 PF01418 Helix-turn-helix domain, rpiR family CHD54_RS05805 PF01380 SIS domain CHD54_RS05810 PF00367 phosphotransferase system, EIIB CHD54_RS05810 PF02378 Phosphotransferase system, EIIC CHD54_RS05820 PF14437 MafB19-like deaminase CHD54_RS05825 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHD54_RS05825 PF01464 Transglycosylase SLT domain CHD54_RS05835 PF02769 AIR synthase related protein, C-terminal domain CHD54_RS05835 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CHD54_RS05835 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CHD54_RS05840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS05840 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS05845 PF13942 YfhG lipoprotein CHD54_RS05850 PF00158 Sigma-54 interaction domain CHD54_RS05850 PF00072 Response regulator receiver domain CHD54_RS05855 PF00543 Nitrogen regulatory protein P-II CHD54_RS05860 PF00854 POT family CHD54_RS05865 PF01276 Orn/Lys/Arg decarboxylase, major domain CHD54_RS05865 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CHD54_RS05865 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CHD54_RS05870 PF13520 Amino acid permease CHD54_RS05875 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS05875 PF18500 CadC C-terminal domain 1 CHD54_RS05880 PF00970 Oxidoreductase FAD-binding domain CHD54_RS05880 PF00042 Globin CHD54_RS05880 PF00175 Oxidoreductase NAD-binding domain CHD54_RS05885 PF00464 Serine hydroxymethyltransferase CHD54_RS05890 PF12832 MFS_1 like family CHD54_RS05895 PF00874 PRD domain CHD54_RS05905 PF03824 High-affinity nickel-transport protein CHD54_RS05910 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CHD54_RS05910 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CHD54_RS05910 PF13187 4Fe-4S dicluster domain CHD54_RS05915 PF00175 Oxidoreductase NAD-binding domain CHD54_RS05915 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CHD54_RS05920 PF17179 4Fe-4S dicluster domain CHD54_RS05925 PF00459 Inositol monophosphatase family CHD54_RS05930 PF00588 SpoU rRNA Methylase family CHD54_RS05935 PF02082 Transcriptional regulator CHD54_RS05940 PF00266 Aminotransferase class-V CHD54_RS05945 PF01592 NifU-like N terminal domain CHD54_RS05950 PF01521 Iron-sulphur cluster biosynthesis CHD54_RS05955 PF07743 HSCB C-terminal oligomerisation domain CHD54_RS05960 PF00012 Hsp70 protein CHD54_RS05965 PF00111 2Fe-2S iron-sulfur cluster binding domain CHD54_RS05970 PF04384 Iron-sulphur cluster assembly CHD54_RS05975 PF00883 Cytosol aminopeptidase family, catalytic domain CHD54_RS05975 PF12404 Peptidase CHD54_RS05980 PF14581 SseB protein C-terminal domain CHD54_RS05980 PF07179 SseB protein N-terminal domain CHD54_RS05990 PF00581 Rhodanese-like domain CHD54_RS05995 PF07678 A-macroglobulin TED domain CHD54_RS05995 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CHD54_RS05995 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CHD54_RS05995 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CHD54_RS05995 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CHD54_RS05995 PF00207 Alpha-2-macroglobulin family CHD54_RS05995 PF07703 Alpha-2-macroglobulin bait region domain CHD54_RS05995 PF01835 MG2 domain CHD54_RS05995 PF17962 Bacterial macroglobulin domain 6 CHD54_RS06000 PF06832 Penicillin-Binding Protein C-terminus Family CHD54_RS06000 PF00912 Transglycosylase CHD54_RS06000 PF00905 Penicillin binding protein transpeptidase domain CHD54_RS06005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHD54_RS06005 PF00384 Molybdopterin oxidoreductase CHD54_RS06005 PF01568 Molydopterin dinucleotide binding domain CHD54_RS06010 PF12800 4Fe-4S binding domain CHD54_RS06010 PF13247 4Fe-4S dicluster domain CHD54_RS06025 PF00334 Nucleoside diphosphate kinase CHD54_RS06030 PF04055 Radical SAM superfamily CHD54_RS06035 PF13464 Domain of unknown function (DUF4115) CHD54_RS06040 PF04551 GcpE protein CHD54_RS06045 PF03129 Anticodon binding domain CHD54_RS06045 PF13393 Histidyl-tRNA synthetase CHD54_RS06050 PF09976 Tetratricopeptide repeat-like domain CHD54_RS06055 PF13360 PQQ-like domain CHD54_RS06060 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CHD54_RS06060 PF01926 50S ribosome-binding GTPase CHD54_RS06065 PF07191 zinc-ribbons CHD54_RS06075 PF16485 Protealysin propeptide CHD54_RS06075 PF02868 Thermolysin metallopeptidase, alpha-helical domain CHD54_RS06075 PF01447 Thermolysin metallopeptidase, catalytic domain CHD54_RS06080 PF02601 Exonuclease VII, large subunit CHD54_RS06080 PF13742 OB-fold nucleic acid binding domain CHD54_RS06085 PF00571 CBS domain CHD54_RS06085 PF00478 IMP dehydrogenase / GMP reductase domain CHD54_RS06090 PF00958 GMP synthase C terminal domain CHD54_RS06090 PF00117 Glutamine amidotransferase class-I CHD54_RS06090 PF02540 NAD synthase CHD54_RS06100 PF01380 SIS domain CHD54_RS06100 PF01418 Helix-turn-helix domain, rpiR family CHD54_RS06110 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS06110 PF00155 Aminotransferase class I and II CHD54_RS06115 PF17358 Family of unknown function (DUF5384) CHD54_RS06120 PF05433 Glycine zipper 2TM domain CHD54_RS06125 PF11119 Protein of unknown function (DUF2633) CHD54_RS06135 PF00563 EAL domain CHD54_RS06135 PF05231 MASE1 CHD54_RS06140 PF02541 Ppx/GppA phosphatase family CHD54_RS06145 PF13089 Polyphosphate kinase N-terminal domain CHD54_RS06145 PF13090 Polyphosphate kinase C-terminal domain 2 CHD54_RS06145 PF17941 Polyphosphate kinase C-terminal domain 1 CHD54_RS06145 PF02503 Polyphosphate kinase middle domain CHD54_RS06150 PF00551 Formyl transferase CHD54_RS06155 PF00586 AIR synthase related protein, N-terminal domain CHD54_RS06155 PF02769 AIR synthase related protein, C-terminal domain CHD54_RS06165 PF00860 Permease family CHD54_RS06170 PF00308 Bacterial dnaA protein CHD54_RS06175 PF03960 ArsC family CHD54_RS06180 PF01435 Peptidase family M48 CHD54_RS06185 PF01594 AI-2E family transporter CHD54_RS06190 PF17853 GGDEF-like domain CHD54_RS06190 PF05651 Putative sugar diacid recognition CHD54_RS06190 PF13556 PucR C-terminal helix-turn-helix domain CHD54_RS06195 PF02447 GntP family permease CHD54_RS06200 PF02595 Glycerate kinase family CHD54_RS06205 PF00578 AhpC/TSA family CHD54_RS06210 PF01842 ACT domain CHD54_RS06215 PF00701 Dihydrodipicolinate synthetase family CHD54_RS06220 PF06804 NlpB/DapX lipoprotein CHD54_RS06225 PF01259 SAICAR synthetase CHD54_RS06230 PF04228 Putative neutral zinc metallopeptidase CHD54_RS06235 PF08351 Domain of unknown function (DUF1726) CHD54_RS06235 PF17176 tRNA-binding domain CHD54_RS06235 PF13718 GNAT acetyltransferase 2 CHD54_RS06235 PF05127 Helicase CHD54_RS06240 PF13980 Uncharacterised protein family (UPF0370) CHD54_RS06245 PF01546 Peptidase family M20/M25/M40 CHD54_RS06245 PF07687 Peptidase dimerisation domain CHD54_RS06250 PF03960 ArsC family CHD54_RS06260 PF00873 AcrB/AcrD/AcrF family CHD54_RS06265 PF00672 HAMP domain CHD54_RS06265 PF07730 Histidine kinase CHD54_RS06265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS06265 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CHD54_RS06270 PF13247 4Fe-4S dicluster domain CHD54_RS06270 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CHD54_RS06270 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS06275 PF00144 Beta-lactamase CHD54_RS06280 PF00293 NUDIX domain CHD54_RS06285 PF06674 Protein of unknown function (DUF1176) CHD54_RS06295 PF00456 Transketolase, thiamine diphosphate binding domain CHD54_RS06295 PF02779 Transketolase, pyrimidine binding domain CHD54_RS06295 PF02780 Transketolase, C-terminal domain CHD54_RS06300 PF00923 Transaldolase/Fructose-6-phosphate aldolase CHD54_RS06305 PF01515 Phosphate acetyl/butaryl transferase CHD54_RS06305 PF03949 Malic enzyme, NAD binding domain CHD54_RS06305 PF00390 Malic enzyme, N-terminal domain CHD54_RS06310 PF00884 Sulfatase CHD54_RS06315 PF13186 Iron-sulfur cluster-binding domain CHD54_RS06315 PF04055 Radical SAM superfamily CHD54_RS06320 PF00936 BMC domain CHD54_RS06325 PF10662 Ethanolamine utilisation - propanediol utilisation CHD54_RS06330 PF06249 Ethanolamine utilisation protein EutQ CHD54_RS06335 PF01923 Cobalamin adenosyltransferase CHD54_RS06340 PF01515 Phosphate acetyl/butaryl transferase CHD54_RS06345 PF00936 BMC domain CHD54_RS06350 PF03319 Ethanolamine utilisation protein EutN/carboxysome CHD54_RS06355 PF00171 Aldehyde dehydrogenase family CHD54_RS06365 PF00465 Iron-containing alcohol dehydrogenase CHD54_RS06370 PF04346 Ethanolamine utilisation protein, EutH CHD54_RS06375 PF06277 Ethanolamine utilisation protein EutA CHD54_RS06380 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CHD54_RS06385 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CHD54_RS06390 PF00936 BMC domain CHD54_RS06395 PF16365 Ethanolamine utilization protein EutK C-terminus CHD54_RS06395 PF00936 BMC domain CHD54_RS06400 PF12833 Helix-turn-helix domain CHD54_RS06405 PF01218 Coproporphyrinogen III oxidase CHD54_RS06410 PF01520 N-acetylmuramoyl-L-alanine amidase CHD54_RS06415 PF00583 Acetyltransferase (GNAT) family CHD54_RS06420 PF11143 Protein of unknown function (DUF2919) CHD54_RS06425 PF06572 Protein of unknown function (DUF1131) CHD54_RS06430 PF04261 Dyp-type peroxidase family CHD54_RS06445 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS06450 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS06455 PF00005 ABC transporter CHD54_RS06460 PF00291 Pyridoxal-phosphate dependent enzyme CHD54_RS06465 PF00117 Glutamine amidotransferase class-I CHD54_RS06470 PF00155 Aminotransferase class I and II CHD54_RS06470 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS06475 PF08543 Phosphomethylpyrimidine kinase CHD54_RS06485 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CHD54_RS06490 PF00391 PEP-utilising enzyme, mobile domain CHD54_RS06490 PF02896 PEP-utilising enzyme, TIM barrel domain CHD54_RS06490 PF05524 PEP-utilising enzyme, N-terminal CHD54_RS06495 PF00381 PTS HPr component phosphorylation site CHD54_RS06500 PF00291 Pyridoxal-phosphate dependent enzyme CHD54_RS06510 PF04354 ZipA, C-terminal FtsZ-binding domain CHD54_RS06515 PF01653 NAD-dependent DNA ligase adenylation domain CHD54_RS06515 PF00533 BRCA1 C Terminus (BRCT) domain CHD54_RS06515 PF12826 Helix-hairpin-helix motif CHD54_RS06515 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CHD54_RS06515 PF03120 NAD-dependent DNA ligase OB-fold domain CHD54_RS06520 PF12843 Putative quorum-sensing-regulated virulence factor CHD54_RS06525 PF13593 SBF-like CPA transporter family (DUF4137) CHD54_RS06595 PF04717 Type VI secretion system, phage-baseplate injector CHD54_RS06645 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHD54_RS06650 PF07037 Putative transcription regulator (DUF1323) CHD54_RS06655 PF07037 Putative transcription regulator (DUF1323) CHD54_RS06670 PF05231 MASE1 CHD54_RS06670 PF00563 EAL domain CHD54_RS06675 PF07670 Nucleoside recognition CHD54_RS06675 PF01773 Na+ dependent nucleoside transporter N-terminus CHD54_RS06675 PF07662 Na+ dependent nucleoside transporter C-terminus CHD54_RS06680 PF01566 Natural resistance-associated macrophage protein CHD54_RS06685 PF10697 Protein of unknown function (DUF2502) CHD54_RS06690 PF00248 Aldo/keto reductase family CHD54_RS06695 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHD54_RS06695 PF00205 Thiamine pyrophosphate enzyme, central domain CHD54_RS06695 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHD54_RS06700 PF00654 Voltage gated chloride channel CHD54_RS06705 PF02685 Glucokinase CHD54_RS06710 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CHD54_RS06715 PF02378 Phosphotransferase system, EIIC CHD54_RS06720 PF00557 Metallopeptidase family M24 CHD54_RS06720 PF01321 Creatinase/Prolidase N-terminal domain CHD54_RS06725 PF05343 M42 glutamyl aminopeptidase CHD54_RS06730 PF05524 PEP-utilising enzyme, N-terminal CHD54_RS06730 PF00391 PEP-utilising enzyme, mobile domain CHD54_RS06730 PF02896 PEP-utilising enzyme, TIM barrel domain CHD54_RS06730 PF00381 PTS HPr component phosphorylation site CHD54_RS06730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHD54_RS06735 PF12833 Helix-turn-helix domain CHD54_RS06740 PF00155 Aminotransferase class I and II CHD54_RS06750 PF03279 Bacterial lipid A biosynthesis acyltransferase CHD54_RS06755 PF10810 Protein of unknown function (DUF2545) CHD54_RS06765 PF01278 Omptin family CHD54_RS06830 PF00589 Phage integrase family CHD54_RS06830 PF14659 Phage integrase, N-terminal SAM-like domain CHD54_RS06830 PF13356 Arm DNA-binding domain CHD54_RS06840 PF01226 Formate/nitrite transporter CHD54_RS06845 PF04333 MlaA lipoprotein CHD54_RS06850 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CHD54_RS06855 PF04175 Protein of unknown function (DUF406) CHD54_RS06860 PF02803 Thiolase, C-terminal domain CHD54_RS06860 PF00108 Thiolase, N-terminal domain CHD54_RS06865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CHD54_RS06865 PF00378 Enoyl-CoA hydratase/isomerase CHD54_RS06865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CHD54_RS06870 PF00300 Histidine phosphatase superfamily (branch 1) CHD54_RS06875 PF01713 Smr domain CHD54_RS06880 PF05175 Methyltransferase small domain CHD54_RS06885 PF01264 Chorismate synthase CHD54_RS06890 PF03411 Penicillin-insensitive murein endopeptidase CHD54_RS06895 PF01925 Sulfite exporter TauE/SafE CHD54_RS06900 PF04315 Elongation factor P hydroxylase CHD54_RS06905 PF08891 YfcL protein CHD54_RS06910 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CHD54_RS06910 PF01266 FAD dependent oxidoreductase CHD54_RS06915 PF02801 Beta-ketoacyl synthase, C-terminal domain CHD54_RS06915 PF00109 Beta-ketoacyl synthase, N-terminal domain CHD54_RS06930 PF13693 Winged helix-turn-helix DNA-binding CHD54_RS06940 PF07690 Major Facilitator Superfamily CHD54_RS06950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHD54_RS06950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHD54_RS06950 PF11890 Domain of unknown function (DUF3410) CHD54_RS06955 PF01118 Semialdehyde dehydrogenase, NAD binding domain CHD54_RS06955 PF02774 Semialdehyde dehydrogenase, dimerisation domain CHD54_RS06960 PF01416 tRNA pseudouridine synthase CHD54_RS06965 PF09335 SNARE associated Golgi protein CHD54_RS06970 PF17848 Acetyl-coA carboxylase zinc finger domain CHD54_RS06970 PF01039 Carboxyl transferase domain CHD54_RS06975 PF08245 Mur ligase middle domain CHD54_RS06975 PF02875 Mur ligase family, glutamate ligase domain CHD54_RS06980 PF05036 Sporulation related domain CHD54_RS06985 PF02674 Colicin V production protein CHD54_RS06990 PF00156 Phosphoribosyl transferase domain CHD54_RS06995 PF13426 PAS domain CHD54_RS06995 PF02954 Bacterial regulatory protein, Fis family CHD54_RS06995 PF00158 Sigma-54 interaction domain CHD54_RS07000 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CHD54_RS07000 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CHD54_RS07005 PF13520 Amino acid permease CHD54_RS07010 PF01168 Alanine racemase, N-terminal domain CHD54_RS07015 PF00324 Amino acid permease CHD54_RS07020 PF02441 Flavoprotein CHD54_RS07030 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHD54_RS07035 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHD54_RS07040 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS07045 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS07050 PF00005 ABC transporter CHD54_RS07055 PF08338 Domain of unknown function (DUF1731) CHD54_RS07055 PF01370 NAD dependent epimerase/dehydratase family CHD54_RS07065 PF02798 Glutathione S-transferase, N-terminal domain CHD54_RS07065 PF00043 Glutathione S-transferase, C-terminal domain CHD54_RS07070 PF14834 Glutathione S-transferase, C-terminal domain CHD54_RS07070 PF02798 Glutathione S-transferase, N-terminal domain CHD54_RS07075 PF12850 Calcineurin-like phosphoesterase superfamily domain CHD54_RS07080 PF00293 NUDIX domain CHD54_RS07085 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS07095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHD54_RS07105 PF03611 PTS system sugar-specific permease component CHD54_RS07110 PF00456 Transketolase, thiamine diphosphate binding domain CHD54_RS07115 PF02780 Transketolase, C-terminal domain CHD54_RS07115 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CHD54_RS07115 PF02779 Transketolase, pyrimidine binding domain CHD54_RS07120 PF03606 C4-dicarboxylate anaerobic carrier CHD54_RS07125 PF07085 DRTGG domain CHD54_RS07125 PF01515 Phosphate acetyl/butaryl transferase CHD54_RS07130 PF00871 Acetokinase family CHD54_RS07140 PF04217 Protein of unknown function, DUF412 CHD54_RS07145 PF03887 YfbU domain CHD54_RS07150 PF13419 Haloacid dehalogenase-like hydrolase CHD54_RS07155 PF02080 TrkA-C domain CHD54_RS07155 PF03600 Citrate transporter CHD54_RS07165 PF00155 Aminotransferase class I and II CHD54_RS07175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS07175 PF03466 LysR substrate binding domain CHD54_RS07185 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CHD54_RS07190 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CHD54_RS07195 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CHD54_RS07195 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CHD54_RS07205 PF10531 SLBB domain CHD54_RS07205 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CHD54_RS07205 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CHD54_RS07210 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CHD54_RS07210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHD54_RS07210 PF01568 Molydopterin dinucleotide binding domain CHD54_RS07210 PF00384 Molybdopterin oxidoreductase CHD54_RS07215 PF00146 NADH dehydrogenase CHD54_RS07220 PF12838 4Fe-4S dicluster domain CHD54_RS07225 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CHD54_RS07230 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CHD54_RS07235 PF00361 Proton-conducting membrane transporter CHD54_RS07235 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CHD54_RS07240 PF00361 Proton-conducting membrane transporter CHD54_RS07245 PF00361 Proton-conducting membrane transporter CHD54_RS07250 PF00072 Response regulator receiver domain CHD54_RS07250 PF01584 CheW-like domain CHD54_RS07255 PF12706 Beta-lactamase superfamily domain CHD54_RS07260 PF13673 Acetyltransferase (GNAT) domain CHD54_RS07265 PF05957 Bacterial protein of unknown function (DUF883) CHD54_RS07270 PF00425 chorismate binding enzyme CHD54_RS07275 PF16582 Middle domain of thiamine pyrophosphate CHD54_RS07275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHD54_RS07275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHD54_RS07280 PF12697 Alpha/beta hydrolase family CHD54_RS07285 PF00378 Enoyl-CoA hydratase/isomerase CHD54_RS07290 PF13378 Enolase C-terminal domain-like CHD54_RS07295 PF00501 AMP-binding enzyme CHD54_RS07295 PF13193 AMP-binding enzyme C-terminal domain CHD54_RS07310 PF00892 EamA-like transporter family CHD54_RS07315 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CHD54_RS07320 PF01522 Polysaccharide deacetylase CHD54_RS07325 PF01370 NAD dependent epimerase/dehydratase family CHD54_RS07325 PF02911 Formyl transferase, C-terminal domain CHD54_RS07325 PF00551 Formyl transferase CHD54_RS07330 PF00535 Glycosyl transferase family 2 CHD54_RS07335 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CHD54_RS07340 PF00300 Histidine phosphatase superfamily (branch 1) CHD54_RS07345 PF00293 NUDIX domain CHD54_RS07350 PF07437 YfaZ precursor CHD54_RS07355 PF00994 Probable molybdopterin binding domain CHD54_RS07365 PF02754 Cysteine-rich domain CHD54_RS07365 PF13183 4Fe-4S dicluster domain CHD54_RS07370 PF00890 FAD binding domain CHD54_RS07375 PF04324 BFD-like [2Fe-2S] binding domain CHD54_RS07375 PF01266 FAD dependent oxidoreductase CHD54_RS07380 PF07690 Major Facilitator Superfamily CHD54_RS07385 PF03009 Glycerophosphoryl diester phosphodiesterase family CHD54_RS07390 PF03466 LysR substrate binding domain CHD54_RS07390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS07395 PF07690 Major Facilitator Superfamily CHD54_RS07400 PF00111 2Fe-2S iron-sulfur cluster binding domain CHD54_RS07405 PF00268 Ribonucleotide reductase, small chain CHD54_RS07410 PF03477 ATP cone domain CHD54_RS07410 PF00317 Ribonucleotide reductase, all-alpha domain CHD54_RS07410 PF02867 Ribonucleotide reductase, barrel domain CHD54_RS07420 PF00521 DNA gyrase/topoisomerase IV, subunit A CHD54_RS07420 PF03989 DNA gyrase C-terminal domain, beta-propeller CHD54_RS07425 PF09456 RcsC Alpha-Beta-Loop (ABL) CHD54_RS07425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS07425 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS07425 PF00072 Response regulator receiver domain CHD54_RS07430 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS07430 PF00072 Response regulator receiver domain CHD54_RS07435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS07435 PF01627 Hpt domain CHD54_RS07435 PF16359 RcsD-ABL domain CHD54_RS07440 PF00267 Gram-negative porin CHD54_RS07445 PF02424 ApbE family CHD54_RS07450 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CHD54_RS07450 PF12833 Helix-turn-helix domain CHD54_RS07450 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CHD54_RS07450 PF02805 Metal binding domain of Ada CHD54_RS07455 PF13532 2OG-Fe(II) oxygenase superfamily CHD54_RS07460 PF00005 ABC transporter CHD54_RS07465 PF00916 Sulfate permease family CHD54_RS07465 PF01740 STAS domain CHD54_RS07470 PF03974 Ecotin CHD54_RS07475 PF12800 4Fe-4S binding domain CHD54_RS07475 PF00037 4Fe-4S binding domain CHD54_RS07475 PF13187 4Fe-4S dicluster domain CHD54_RS07480 PF03927 NapD protein CHD54_RS07485 PF00384 Molybdopterin oxidoreductase CHD54_RS07485 PF01568 Molydopterin dinucleotide binding domain CHD54_RS07485 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHD54_RS07490 PF12838 4Fe-4S dicluster domain CHD54_RS07490 PF12800 4Fe-4S binding domain CHD54_RS07495 PF13237 4Fe-4S dicluster domain CHD54_RS07495 PF12801 4Fe-4S binding domain CHD54_RS07500 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CHD54_RS07505 PF03264 NapC/NirT cytochrome c family, N-terminal region CHD54_RS07510 PF00005 ABC transporter CHD54_RS07515 PF03379 CcmB protein CHD54_RS07525 PF04995 Heme exporter protein D (CcmD) CHD54_RS07530 PF03100 CcmE CHD54_RS07535 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CHD54_RS07535 PF01578 Cytochrome C assembly protein CHD54_RS07540 PF08534 Redoxin CHD54_RS07545 PF03918 Cytochrome C biogenesis protein CHD54_RS07550 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS07550 PF00072 Response regulator receiver domain CHD54_RS07565 PF18807 Tripartite Tc toxins repeat CHD54_RS07565 PF14431 YwqJ-like deaminase CHD54_RS07570 PF18807 Tripartite Tc toxins repeat CHD54_RS07570 PF14431 YwqJ-like deaminase CHD54_RS07575 PF18807 Tripartite Tc toxins repeat CHD54_RS07575 PF05785 Rho-activating domain of cytotoxic necrotizing factor CHD54_RS07580 PF12255 Insecticide toxin TcdB middle/C-terminal region CHD54_RS07580 PF12256 Insecticide toxin TcdB middle/N-terminal region CHD54_RS07580 PF03534 Salmonella virulence plasmid 65kDa B protein CHD54_RS07585 PF18413 Neuraminidase-like domain CHD54_RS07585 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain CHD54_RS07590 PF03538 Salmonella virulence plasmid 28.1kDa A protein CHD54_RS07660 PF10065 Uncharacterized conserved protein (DUF2303) CHD54_RS07690 PF10549 ORF11CD3 domain CHD54_RS07690 PF09669 Phage regulatory protein Rha (Phage_pRha) CHD54_RS07705 PF06069 PerC transcriptional activator CHD54_RS07710 PF05869 DNA N-6-adenine-methyltransferase (Dam) CHD54_RS07715 PF05866 Endodeoxyribonuclease RusA CHD54_RS07725 PF06147 Protein of unknown function (DUF968) CHD54_RS07735 PF01546 Peptidase family M20/M25/M40 CHD54_RS07735 PF07687 Peptidase dimerisation domain CHD54_RS07750 PF00182 Chitinase class I CHD54_RS07755 PF10721 Protein of unknown function (DUF2514) CHD54_RS07770 PF03354 Phage Terminase CHD54_RS07815 PF04984 Phage tail sheath protein subtilisin-like domain CHD54_RS07815 PF17482 Phage tail sheath C-terminal domain CHD54_RS07855 PF04865 Baseplate J-like protein CHD54_RS07860 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) CHD54_RS07875 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CHD54_RS07885 PF02796 Helix-turn-helix domain of resolvase CHD54_RS07885 PF00239 Resolvase, N terminal domain CHD54_RS07905 PF11893 Domain of unknown function (DUF3413) CHD54_RS07905 PF00884 Sulfatase CHD54_RS07910 PF07208 Protein of unknown function (DUF1414) CHD54_RS07915 PF04245 37-kD nucleoid-associated bacterial protein CHD54_RS07920 PF01386 Ribosomal L25p family CHD54_RS07925 PF04851 Type III restriction enzyme, res subunit CHD54_RS07925 PF00271 Helicase conserved C-terminal domain CHD54_RS07930 PF01479 S4 domain CHD54_RS07930 PF00849 RNA pseudouridylate synthase CHD54_RS07935 PF07690 Major Facilitator Superfamily CHD54_RS07945 PF13989 YejG-like protein CHD54_RS07950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHD54_RS07950 PF00005 ABC transporter CHD54_RS07955 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS07955 PF12911 N-terminal TM domain of oligopeptide transport permease C CHD54_RS07960 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS07965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHD54_RS07970 PF00563 EAL domain CHD54_RS07970 PF12792 CSS motif domain associated with EAL CHD54_RS07975 PF00877 NlpC/P60 family CHD54_RS07980 PF01569 PAP2 superfamily CHD54_RS07985 PF07683 Cobalamin synthesis protein cobW C-terminal domain CHD54_RS07985 PF02492 CobW/HypB/UreG, nucleotide-binding domain CHD54_RS07990 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS07990 PF00155 Aminotransferase class I and II CHD54_RS07995 PF03264 NapC/NirT cytochrome c family, N-terminal region CHD54_RS08000 PF01568 Molydopterin dinucleotide binding domain CHD54_RS08000 PF00384 Molybdopterin oxidoreductase CHD54_RS08000 PF18364 Molybdopterin oxidoreductase N-terminal domain CHD54_RS08005 PF02613 Nitrate reductase delta subunit CHD54_RS08010 PF09285 Elongation factor P, C-terminal CHD54_RS08010 PF01132 Elongation factor P (EF-P) OB domain CHD54_RS08010 PF08207 Elongation factor P (EF-P) KOW-like domain CHD54_RS08020 PF03692 Putative zinc- or iron-chelating domain CHD54_RS08025 PF07690 Major Facilitator Superfamily CHD54_RS08030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHD54_RS08030 PF00381 PTS HPr component phosphorylation site CHD54_RS08035 PF00294 pfkB family carbohydrate kinase CHD54_RS08040 PF02378 Phosphotransferase system, EIIC CHD54_RS08040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CHD54_RS08045 PF01261 Xylose isomerase-like TIM barrel CHD54_RS08050 PF03601 Conserved hypothetical protein 698 CHD54_RS08055 PF03466 LysR substrate binding domain CHD54_RS08055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS08060 PF00324 Amino acid permease CHD54_RS08070 PF07715 TonB-dependent Receptor Plug Domain CHD54_RS08070 PF00593 TonB dependent receptor CHD54_RS08080 PF00756 Putative esterase CHD54_RS08085 PF01227 GTP cyclohydrolase I CHD54_RS08090 PF04235 Protein of unknown function (DUF418) CHD54_RS08095 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS08100 PF13407 Periplasmic binding protein domain CHD54_RS08105 PF00005 ABC transporter CHD54_RS08110 PF02653 Branched-chain amino acid transport system / permease component CHD54_RS08115 PF01180 Dihydroorotate dehydrogenase CHD54_RS08120 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS08120 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CHD54_RS08125 PF10808 Protein of unknown function (DUF2542) CHD54_RS08130 PF02698 DUF218 domain CHD54_RS08135 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CHD54_RS08135 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CHD54_RS08140 PF04172 LrgB-like family CHD54_RS08145 PF03788 LrgA family CHD54_RS08150 PF03466 LysR substrate binding domain CHD54_RS08150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS08155 PF07690 Major Facilitator Superfamily CHD54_RS08160 PF07883 Cupin domain CHD54_RS08165 PF01557 Fumarylacetoacetate (FAA) hydrolase family CHD54_RS08170 PF02798 Glutathione S-transferase, N-terminal domain CHD54_RS08170 PF14497 Glutathione S-transferase, C-terminal domain CHD54_RS08175 PF01494 FAD binding domain CHD54_RS08180 PF01207 Dihydrouridine synthase (Dus) CHD54_RS08190 PF02321 Outer membrane efflux protein CHD54_RS08200 PF09335 SNARE associated Golgi protein CHD54_RS08205 PF04893 Yip1 domain CHD54_RS08210 PF00768 D-alanyl-D-alanine carboxypeptidase CHD54_RS08215 PF01565 FAD binding domain CHD54_RS08215 PF09330 D-lactate dehydrogenase, membrane binding CHD54_RS08220 PF14310 Fibronectin type III-like domain CHD54_RS08220 PF00933 Glycosyl hydrolase family 3 N terminal domain CHD54_RS08220 PF01915 Glycosyl hydrolase family 3 C-terminal domain CHD54_RS08225 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CHD54_RS08230 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS08235 PF00005 ABC transporter CHD54_RS08240 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS08250 PF13411 MerR HTH family regulatory protein CHD54_RS08255 PF06580 Histidine kinase CHD54_RS08255 PF07694 5TMR of 5TMR-LYT CHD54_RS08260 PF04397 LytTr DNA-binding domain CHD54_RS08260 PF00072 Response regulator receiver domain CHD54_RS08265 PF07308 Protein of unknown function (DUF1456) CHD54_RS08270 PF06998 Protein of unknown function (DUF1307) CHD54_RS08275 PF09334 tRNA synthetases class I (M) CHD54_RS08275 PF01588 Putative tRNA binding domain CHD54_RS08280 PF10609 NUBPL iron-transfer P-loop NTPase CHD54_RS08290 PF00419 Fimbrial protein CHD54_RS08295 PF02753 Pili assembly chaperone PapD, C-terminal domain CHD54_RS08295 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CHD54_RS08300 PF00577 Outer membrane usher protein CHD54_RS08300 PF13953 PapC C-terminal domain CHD54_RS08300 PF13954 PapC N-terminal domain CHD54_RS08310 PF11776 Nickel/cobalt transporter regulator CHD54_RS08315 PF02110 Hydroxyethylthiazole kinase family CHD54_RS08320 PF08543 Phosphomethylpyrimidine kinase CHD54_RS08325 PF07702 UTRA domain CHD54_RS08325 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS08330 PF00294 pfkB family carbohydrate kinase CHD54_RS08335 PF03747 ADP-ribosylglycohydrolase CHD54_RS08340 PF03825 Nucleoside H+ symporter CHD54_RS08345 PF01791 DeoC/LacD family aldolase CHD54_RS08350 PF00781 Diacylglycerol kinase catalytic domain CHD54_RS08365 PF16325 Peptidase family U32 C-terminal domain CHD54_RS08365 PF01136 Peptidase family U32 CHD54_RS08370 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS08370 PF00072 Response regulator receiver domain CHD54_RS08375 PF00672 HAMP domain CHD54_RS08375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS08375 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS08380 PF07690 Major Facilitator Superfamily CHD54_RS08385 PF00873 AcrB/AcrD/AcrF family CHD54_RS08390 PF00873 AcrB/AcrD/AcrF family CHD54_RS08395 PF13533 Biotin-lipoyl like CHD54_RS08405 PF00012 Hsp70 protein CHD54_RS08415 PF00563 EAL domain CHD54_RS08415 PF00990 Diguanylate cyclase, GGDEF domain CHD54_RS08415 PF05231 MASE1 CHD54_RS08415 PF08447 PAS fold CHD54_RS08415 PF08448 PAS fold CHD54_RS08415 PF13426 PAS domain CHD54_RS08420 PF00485 Phosphoribulokinase / Uridine kinase family CHD54_RS08425 PF00692 dUTPase CHD54_RS08430 PF05170 AsmA family CHD54_RS08435 PF00571 CBS domain CHD54_RS08435 PF03471 Transporter associated domain CHD54_RS08435 PF03741 Integral membrane protein TerC family CHD54_RS08440 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CHD54_RS08440 PF10531 SLBB domain CHD54_RS08440 PF02563 Polysaccharide biosynthesis/export protein CHD54_RS08445 PF01451 Low molecular weight phosphotyrosine protein phosphatase CHD54_RS08450 PF13614 AAA domain CHD54_RS08450 PF13807 G-rich domain on putative tyrosine kinase CHD54_RS08450 PF02706 Chain length determinant protein CHD54_RS08455 PF00535 Glycosyl transferase family 2 CHD54_RS08460 PF00132 Bacterial transferase hexapeptide (six repeats) CHD54_RS08465 PF00534 Glycosyl transferases group 1 CHD54_RS08465 PF13439 Glycosyltransferase Family 4 CHD54_RS08475 PF00535 Glycosyl transferase family 2 CHD54_RS08480 PF00132 Bacterial transferase hexapeptide (six repeats) CHD54_RS08485 PF16363 GDP-mannose 4,6 dehydratase CHD54_RS08490 PF01370 NAD dependent epimerase/dehydratase family CHD54_RS08495 PF00293 NUDIX domain CHD54_RS08500 PF00534 Glycosyl transferases group 1 CHD54_RS08500 PF13579 Glycosyl transferase 4-like domain CHD54_RS08505 PF01050 Mannose-6-phosphate isomerase CHD54_RS08505 PF00483 Nucleotidyl transferase CHD54_RS08510 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CHD54_RS08510 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CHD54_RS08510 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHD54_RS08510 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CHD54_RS08515 PF02397 Bacterial sugar transferase CHD54_RS08525 PF04230 Polysaccharide pyruvyl transferase CHD54_RS08530 PF13439 Glycosyltransferase Family 4 CHD54_RS08530 PF00534 Glycosyl transferases group 1 CHD54_RS08540 PF00483 Nucleotidyl transferase CHD54_RS08580 PF16363 GDP-mannose 4,6 dehydratase CHD54_RS08585 PF01370 NAD dependent epimerase/dehydratase family CHD54_RS08590 PF00293 NUDIX domain CHD54_RS08595 PF00483 Nucleotidyl transferase CHD54_RS08595 PF01050 Mannose-6-phosphate isomerase CHD54_RS08600 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CHD54_RS08600 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CHD54_RS08600 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CHD54_RS08600 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHD54_RS08610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CHD54_RS08610 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CHD54_RS08620 PF02706 Chain length determinant protein CHD54_RS08625 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CHD54_RS08625 PF01502 Phosphoribosyl-AMP cyclohydrolase CHD54_RS08630 PF00977 Histidine biosynthesis protein CHD54_RS08635 PF00977 Histidine biosynthesis protein CHD54_RS08640 PF00117 Glutamine amidotransferase class-I CHD54_RS08645 PF00475 Imidazoleglycerol-phosphate dehydratase CHD54_RS08650 PF00155 Aminotransferase class I and II CHD54_RS08655 PF00815 Histidinol dehydrogenase CHD54_RS08660 PF08029 HisG, C-terminal domain CHD54_RS08660 PF01634 ATP phosphoribosyltransferase CHD54_RS08670 PF01370 NAD dependent epimerase/dehydratase family CHD54_RS08675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS08675 PF03466 LysR substrate binding domain CHD54_RS08685 PF13520 Amino acid permease CHD54_RS08690 PF00929 Exonuclease CHD54_RS08690 PF08411 Exonuclease C-terminal CHD54_RS08695 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHD54_RS08695 PF00384 Molybdopterin oxidoreductase CHD54_RS08695 PF01568 Molydopterin dinucleotide binding domain CHD54_RS08700 PF12800 4Fe-4S binding domain CHD54_RS08700 PF13247 4Fe-4S dicluster domain CHD54_RS08705 PF01292 Prokaryotic cytochrome b561 CHD54_RS08710 PF00768 D-alanyl-D-alanine carboxypeptidase CHD54_RS08710 PF07943 Penicillin-binding protein 5, C-terminal domain CHD54_RS08715 PF06445 GyrI-like small molecule binding domain CHD54_RS08720 PF04632 Fusaric acid resistance protein family CHD54_RS08730 PF04363 Protein of unknown function (DUF496) CHD54_RS08740 PF07685 CobB/CobQ-like glutamine amidotransferase domain CHD54_RS08745 PF07685 CobB/CobQ-like glutamine amidotransferase domain CHD54_RS08750 PF17969 L,D-transpeptidase C-terminal domain CHD54_RS08750 PF03734 L,D-transpeptidase catalytic domain CHD54_RS08755 PF14431 YwqJ-like deaminase CHD54_RS08755 PF18807 Tripartite Tc toxins repeat CHD54_RS08765 PF13693 Winged helix-turn-helix DNA-binding CHD54_RS08790 PF13356 Arm DNA-binding domain CHD54_RS08790 PF00589 Phage integrase family CHD54_RS08835 PF00589 Phage integrase family CHD54_RS08835 PF13356 Arm DNA-binding domain CHD54_RS08850 PF01554 MatE CHD54_RS08890 PF05947 Type VI secretion system, TssF CHD54_RS08895 PF04717 Type VI secretion system, phage-baseplate injector CHD54_RS08900 PF03527 RHS protein CHD54_RS08900 PF05593 RHS Repeat CHD54_RS08925 PF01048 Phosphorylase superfamily CHD54_RS08925 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CHD54_RS08935 PF03577 Peptidase family C69 CHD54_RS08970 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CHD54_RS09025 PF06167 Glucose-regulated metallo-peptidase M90 CHD54_RS09035 PF00313 'Cold-shock' DNA-binding domain CHD54_RS09045 PF00267 Gram-negative porin CHD54_RS09055 PF01966 HD domain CHD54_RS09060 PF00145 C-5 cytosine-specific DNA methylase CHD54_RS09060 PF18284 DNA methylase N-terminal domain CHD54_RS09065 PF03852 DNA mismatch endonuclease Vsr CHD54_RS09070 PF00892 EamA-like transporter family CHD54_RS09075 PF05661 Protein of unknown function (DUF808) CHD54_RS09080 PF09926 Uncharacterized small protein (DUF2158) CHD54_RS09085 PF17151 Periplasmic sensor domain CHD54_RS09085 PF00990 Diguanylate cyclase, GGDEF domain CHD54_RS09095 PF10733 Protein of unknown function (DUF2525) CHD54_RS09100 PF10781 Dextransucrase DSRB CHD54_RS09105 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS09110 PF01311 Bacterial export proteins, family 1 CHD54_RS09115 PF01313 Bacterial export proteins, family 3 CHD54_RS09120 PF00813 FliP family CHD54_RS09125 PF04347 Flagellar biosynthesis protein, FliO CHD54_RS09130 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CHD54_RS09130 PF16973 Flagellar motor switch protein FliN N-terminal CHD54_RS09135 PF02154 Flagellar motor switch protein FliM CHD54_RS09135 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CHD54_RS09140 PF03748 Flagellar basal body-associated protein FliL CHD54_RS09145 PF02120 Flagellar hook-length control protein FliK CHD54_RS09150 PF02050 Flagellar FliJ protein CHD54_RS09155 PF18269 T3SS EscN ATPase C-terminal domain CHD54_RS09155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHD54_RS09160 PF02108 Flagellar assembly protein FliH CHD54_RS09165 PF14842 FliG N-terminal domain CHD54_RS09165 PF01706 FliG C-terminal domain CHD54_RS09165 PF14841 FliG middle domain CHD54_RS09170 PF01514 Secretory protein of YscJ/FliF family CHD54_RS09170 PF08345 Flagellar M-ring protein C-terminal CHD54_RS09175 PF02049 Flagellar hook-basal body complex protein FliE CHD54_RS09185 PF01206 Sulfurtransferase TusA CHD54_RS09190 PF04143 Sulphur transport CHD54_RS09195 PF13987 YedD-like protein CHD54_RS09200 PF02806 Alpha amylase, C-terminal all-beta domain CHD54_RS09200 PF00128 Alpha amylase, catalytic domain CHD54_RS09205 PF05400 Flagellar protein FliT CHD54_RS09210 PF02561 Flagellar protein FliS CHD54_RS09215 PF07196 Flagellin hook IN motif CHD54_RS09215 PF07195 Flagellar hook-associated protein 2 C-terminus CHD54_RS09215 PF02465 Flagellar hook-associated protein 2 N-terminus CHD54_RS09220 PF00700 Bacterial flagellin C-terminal helical region CHD54_RS09220 PF00669 Bacterial flagellin N-terminal helical region CHD54_RS09230 PF04542 Sigma-70 region 2 CHD54_RS09230 PF04539 Sigma-70 region 3 CHD54_RS09230 PF04545 Sigma-70, region 4 CHD54_RS09235 PF02899 Phage integrase, N-terminal SAM-like domain CHD54_RS09240 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHD54_RS09245 PF00291 Pyridoxal-phosphate dependent enzyme CHD54_RS09250 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS09255 PF00005 ABC transporter CHD54_RS09260 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS09260 PF03472 Autoinducer binding domain CHD54_RS09265 PF10769 Protein of unknown function (DUF2594) CHD54_RS09270 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS09270 PF00072 Response regulator receiver domain CHD54_RS09275 PF01541 GIY-YIG catalytic domain CHD54_RS09275 PF08459 UvrC Helix-hairpin-helix N-terminal CHD54_RS09275 PF02151 UvrB/uvrC motif CHD54_RS09280 PF01066 CDP-alcohol phosphatidyltransferase CHD54_RS09325 PF02810 SEC-C motif CHD54_RS09325 PF03695 Uncharacterised protein family (UPF0149) CHD54_RS09330 PF03222 Tryptophan/tyrosine permease family CHD54_RS09335 PF10678 Protein of unknown function (DUF2492) CHD54_RS09345 PF13992 YecR-like lipoprotein CHD54_RS09355 PF10964 Protein of unknown function (DUF2766) CHD54_RS09360 PF00210 Ferritin-like domain CHD54_RS09375 PF02358 Trehalose-phosphatase CHD54_RS09380 PF00982 Glycosyltransferase family 20 CHD54_RS09385 PF00582 Universal stress protein family CHD54_RS09395 PF05247 Flagellar transcriptional activator (FlhD) CHD54_RS09400 PF05280 Flagellar transcriptional activator (FlhC) CHD54_RS09405 PF01618 MotA/TolQ/ExbB proton channel family CHD54_RS09410 PF13677 Membrane MotB of proton-channel complex MotA/MotB CHD54_RS09410 PF00691 OmpA family CHD54_RS09415 PF01584 CheW-like domain CHD54_RS09415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS09415 PF01627 Hpt domain CHD54_RS09415 PF02895 Signal transducing histidine kinase, homodimeric domain CHD54_RS09415 PF09078 CheY binding CHD54_RS09420 PF01584 CheW-like domain CHD54_RS09425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHD54_RS09425 PF00672 HAMP domain CHD54_RS09425 PF02203 Tar ligand binding domain homologue CHD54_RS09430 PF03705 CheR methyltransferase, all-alpha domain CHD54_RS09430 PF01739 CheR methyltransferase, SAM binding domain CHD54_RS09435 PF01339 CheB methylesterase CHD54_RS09435 PF00072 Response regulator receiver domain CHD54_RS09440 PF00072 Response regulator receiver domain CHD54_RS09445 PF04344 Chemotaxis phosphatase, CheZ CHD54_RS09450 PF01312 FlhB HrpN YscU SpaS Family CHD54_RS09455 PF00771 FHIPEP family CHD54_RS09460 PF06366 Flagellar protein FlhE CHD54_RS09465 PF07470 Glycosyl Hydrolase Family 88 CHD54_RS09470 PF03717 Penicillin-binding Protein dimerisation domain CHD54_RS09470 PF00905 Penicillin binding protein transpeptidase domain CHD54_RS09475 PF00750 tRNA synthetases class I (R) CHD54_RS09475 PF03485 Arginyl tRNA synthetase N terminal domain CHD54_RS09475 PF05746 DALR anticodon binding domain CHD54_RS09480 PF06185 YecM protein CHD54_RS09485 PF03932 CutC family CHD54_RS09490 PF08003 Protein of unknown function (DUF1698) CHD54_RS09495 PF13649 Methyltransferase domain CHD54_RS09500 PF01124 MAPEG family CHD54_RS09505 PF01904 Protein of unknown function DUF72 CHD54_RS09525 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CHD54_RS09540 PF02586 SOS response associated peptidase (SRAP) CHD54_RS09545 PF00857 Isochorismatase family CHD54_RS09550 PF01336 OB-fold nucleic acid binding domain CHD54_RS09550 PF00152 tRNA synthetases class II (D, K and N) CHD54_RS09550 PF02938 GAD domain CHD54_RS09555 PF00293 NUDIX domain CHD54_RS09560 PF01709 Transcriptional regulator CHD54_RS09565 PF02075 Crossover junction endodeoxyribonuclease RuvC CHD54_RS09570 PF01330 RuvA N terminal domain CHD54_RS09570 PF07499 RuvA, C-terminal domain CHD54_RS09575 PF05496 Holliday junction DNA helicase RuvB P-loop domain CHD54_RS09575 PF17864 RuvB AAA lid domain CHD54_RS09575 PF05491 RuvB C-terminal winged helix domain CHD54_RS09580 PF00950 ABC 3 transport family CHD54_RS09585 PF00005 ABC transporter CHD54_RS09590 PF01297 Zinc-uptake complex component A periplasmic CHD54_RS09595 PF01476 LysM domain CHD54_RS09595 PF08525 Opacity-associated protein A N-terminal motif CHD54_RS09595 PF01551 Peptidase family M23 CHD54_RS09600 PF03279 Bacterial lipid A biosynthesis acyltransferase CHD54_RS09605 PF02887 Pyruvate kinase, alpha/beta domain CHD54_RS09605 PF00224 Pyruvate kinase, barrel domain CHD54_RS09610 PF01418 Helix-turn-helix domain, rpiR family CHD54_RS09610 PF01380 SIS domain CHD54_RS09620 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CHD54_RS09620 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CHD54_RS09625 PF00920 Dehydratase family CHD54_RS09630 PF01081 KDPG and KHG aldolase CHD54_RS09635 PF02222 ATP-grasp domain CHD54_RS09640 PF07130 YebG protein CHD54_RS09645 PF13995 YebF-like protein CHD54_RS09650 PF04391 Protein of unknown function (DUF533) CHD54_RS09655 PF00326 Prolyl oligopeptidase family CHD54_RS09655 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CHD54_RS09660 PF00929 Exonuclease CHD54_RS09665 PF00795 Carbon-nitrogen hydrolase CHD54_RS09670 PF06440 DNA polymerase III, theta subunit CHD54_RS09675 PF04234 CopC domain CHD54_RS09680 PF05425 Copper resistance protein D CHD54_RS09685 PF10709 Protein of unknown function (DUF2511) CHD54_RS09700 PF01381 Helix-turn-helix CHD54_RS09730 PF14496 C-terminal novel E3 ligase, LRR-interacting CHD54_RS09730 PF12468 Type III secretion system leucine rich repeat protein CHD54_RS09750 PF14496 C-terminal novel E3 ligase, LRR-interacting CHD54_RS09750 PF12468 Type III secretion system leucine rich repeat protein CHD54_RS09785 PF14496 C-terminal novel E3 ligase, LRR-interacting CHD54_RS09785 PF12468 Type III secretion system leucine rich repeat protein CHD54_RS09810 PF02753 Pili assembly chaperone PapD, C-terminal domain CHD54_RS09810 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CHD54_RS09815 PF00577 Outer membrane usher protein CHD54_RS09815 PF13953 PapC C-terminal domain CHD54_RS09815 PF13954 PapC N-terminal domain CHD54_RS09820 PF00419 Fimbrial protein CHD54_RS09835 PF07487 SopE GEF domain CHD54_RS09835 PF05364 Salmonella type III secretion SopE effector N-terminus CHD54_RS09845 PF00149 Calcineurin-like phosphoesterase CHD54_RS09850 PF07358 Protein of unknown function (DUF1482) CHD54_RS09855 PF07351 Protein of unknown function (DUF1480) CHD54_RS09860 PF01189 16S rRNA methyltransferase RsmB/F CHD54_RS09860 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CHD54_RS09860 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CHD54_RS09865 PF02470 MlaD protein CHD54_RS09870 PF04403 Paraquat-inducible protein A CHD54_RS09875 PF13185 GAF domain CHD54_RS09880 PF17516 ProQ C-terminal domain CHD54_RS09880 PF04352 ProQ/FINO family CHD54_RS09885 PF11818 C-terminal domain of tail specific protease (DUF3340) CHD54_RS09885 PF00595 PDZ domain CHD54_RS09885 PF17804 Tail specific protease N-terminal domain CHD54_RS09885 PF03572 Peptidase family S41 CHD54_RS09890 PF01435 Peptidase family M48 CHD54_RS09895 PF07690 Major Facilitator Superfamily CHD54_RS09900 PF09339 IclR helix-turn-helix domain CHD54_RS09900 PF01614 Bacterial transcriptional regulator CHD54_RS09905 PF13996 YobH-like protein CHD54_RS09910 PF13998 MgrB protein CHD54_RS09915 PF13974 YebO-like protein CHD54_RS09920 PF10736 Protein of unknown function (DUF2627) CHD54_RS09925 PF00313 'Cold-shock' DNA-binding domain CHD54_RS09930 PF03717 Penicillin-binding Protein dimerisation domain CHD54_RS09930 PF00905 Penicillin binding protein transpeptidase domain CHD54_RS09935 PF13847 Methyltransferase domain CHD54_RS09940 PF02659 Putative manganese efflux pump CHD54_RS09945 PF06173 Protein of unknown function (DUF986) CHD54_RS09950 PF03613 PTS system mannose/fructose/sorbose family IID component CHD54_RS09955 PF03609 PTS system sorbose-specific iic component CHD54_RS09960 PF03830 PTS system sorbose subfamily IIB component CHD54_RS09960 PF03610 PTS system fructose IIA component CHD54_RS09965 PF03741 Integral membrane protein TerC family CHD54_RS09965 PF03471 Transporter associated domain CHD54_RS09970 PF12792 CSS motif domain associated with EAL CHD54_RS09970 PF00563 EAL domain CHD54_RS09975 PF03315 Serine dehydratase beta chain CHD54_RS09975 PF03313 Serine dehydratase alpha chain CHD54_RS09980 PF00293 NUDIX domain CHD54_RS09985 PF04715 Anthranilate synthase component I, N terminal region CHD54_RS09985 PF00425 chorismate binding enzyme CHD54_RS09990 PF03701 Uncharacterised protein family (UPF0181) CHD54_RS09995 PF01042 Endoribonuclease L-PSP CHD54_RS10000 PF13307 Helicase C-terminal domain CHD54_RS10000 PF04851 Type III restriction enzyme, res subunit CHD54_RS10005 PF00814 Glycoprotease family CHD54_RS10010 PF03843 Outer membrane lipoprotein Slp family CHD54_RS10015 PF13193 AMP-binding enzyme C-terminal domain CHD54_RS10015 PF00501 AMP-binding enzyme CHD54_RS10020 PF00570 HRDC domain CHD54_RS10020 PF01612 3'-5' exonuclease CHD54_RS10025 PF03776 Septum formation topological specificity factor MinE CHD54_RS10030 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CHD54_RS10035 PF05209 Septum formation inhibitor MinC, N-terminal domain CHD54_RS10035 PF03775 Septum formation inhibitor MinC, C-terminal domain CHD54_RS10040 PF05166 YcgL domain CHD54_RS10045 PF01557 Fumarylacetoacetate (FAA) hydrolase family CHD54_RS10050 PF03692 Putative zinc- or iron-chelating domain CHD54_RS10065 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CHD54_RS10070 PF07487 SopE GEF domain CHD54_RS10070 PF05364 Salmonella type III secretion SopE effector N-terminus CHD54_RS10085 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system CHD54_RS10095 PF02600 Disulfide bond formation protein DsbB CHD54_RS10100 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CHD54_RS10105 PF07840 FadR C-terminal domain CHD54_RS10105 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS10110 PF04293 SpoVR like protein CHD54_RS10115 PF01266 FAD dependent oxidoreductase CHD54_RS10120 PF01168 Alanine racemase, N-terminal domain CHD54_RS10120 PF00842 Alanine racemase, C-terminal domain CHD54_RS10125 PF03471 Transporter associated domain CHD54_RS10125 PF02080 TrkA-C domain CHD54_RS10125 PF00999 Sodium/hydrogen exchanger family CHD54_RS10130 PF02016 LD-carboxypeptidase N-terminal domain CHD54_RS10130 PF17676 LD-carboxypeptidase C-terminal domain CHD54_RS10135 PF01464 Transglycosylase SLT domain CHD54_RS10140 PF07238 PilZ domain CHD54_RS10140 PF07317 Flagellar regulator YcgR CHD54_RS10145 PF04226 Transglycosylase associated protein CHD54_RS10150 PF01204 Trehalase CHD54_RS10155 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CHD54_RS10155 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CHD54_RS10160 PF08173 Membrane bound YbgT-like protein CHD54_RS10165 PF02322 Cytochrome bd terminal oxidase subunit II CHD54_RS10170 PF01654 Cytochrome bd terminal oxidase subunit I CHD54_RS10175 PF04809 HupH hydrogenase expression protein, C-terminal conserved region CHD54_RS10180 PF07449 Hydrogenase-1 expression protein HyaE CHD54_RS10185 PF01750 Hydrogenase maturation protease CHD54_RS10190 PF01292 Prokaryotic cytochrome b561 CHD54_RS10195 PF00374 Nickel-dependent hydrogenase CHD54_RS10200 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CHD54_RS10200 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CHD54_RS10210 PF06178 Oligogalacturonate-specific porin protein (KdgM) CHD54_RS10215 PF00884 Sulfatase CHD54_RS10220 PF08220 DeoR-like helix-turn-helix domain CHD54_RS10220 PF00455 DeoR C terminal sensor domain CHD54_RS10225 PF03830 PTS system sorbose subfamily IIB component CHD54_RS10230 PF03609 PTS system sorbose-specific iic component CHD54_RS10235 PF03613 PTS system mannose/fructose/sorbose family IID component CHD54_RS10240 PF03610 PTS system fructose IIA component CHD54_RS10245 PF07470 Glycosyl Hydrolase Family 88 CHD54_RS10250 PF13186 Iron-sulfur cluster-binding domain CHD54_RS10250 PF04055 Radical SAM superfamily CHD54_RS10255 PF00884 Sulfatase CHD54_RS10270 PF02661 Fic/DOC family CHD54_RS10275 PF13356 Arm DNA-binding domain CHD54_RS10275 PF00589 Phage integrase family CHD54_RS10280 PF06071 Protein of unknown function (DUF933) CHD54_RS10280 PF01926 50S ribosome-binding GTPase CHD54_RS10285 PF01195 Peptidyl-tRNA hydrolase CHD54_RS10290 PF10762 Protein of unknown function (DUF2583) CHD54_RS10295 PF01740 STAS domain CHD54_RS10295 PF00916 Sulfate permease family CHD54_RS10300 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CHD54_RS10300 PF14572 Phosphoribosyl synthetase-associated domain CHD54_RS10305 PF08544 GHMP kinases C terminal CHD54_RS10305 PF00288 GHMP kinases N terminal domain CHD54_RS10310 PF03550 Outer membrane lipoprotein LolB CHD54_RS10315 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CHD54_RS10315 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CHD54_RS10315 PF01488 Shikimate / quinate 5-dehydrogenase CHD54_RS10320 PF03462 PCRF domain CHD54_RS10320 PF00472 RF-1 domain CHD54_RS10325 PF13847 Methyltransferase domain CHD54_RS10325 PF17827 PrmC N-terminal domain CHD54_RS10330 PF04247 Invasion gene expression up-regulator, SirB CHD54_RS10335 PF13369 Transglutaminase-like superfamily CHD54_RS10340 PF00793 DAHP synthetase I family CHD54_RS10345 PF01699 Sodium/calcium exchanger protein CHD54_RS10350 PF06150 ChaB CHD54_RS10355 PF04752 ChaC-like protein CHD54_RS10360 PF02635 DsrE/DsrF-like family CHD54_RS10365 PF11924 Inverse autotransporter, beta-domain CHD54_RS10370 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS10370 PF00072 Response regulator receiver domain CHD54_RS10375 PF00672 HAMP domain CHD54_RS10375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS10375 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CHD54_RS10375 PF07730 Histidine kinase CHD54_RS10385 PF07690 Major Facilitator Superfamily CHD54_RS10390 PF01568 Molydopterin dinucleotide binding domain CHD54_RS10390 PF14710 Respiratory nitrate reductase alpha N-terminal CHD54_RS10390 PF00384 Molybdopterin oxidoreductase CHD54_RS10395 PF13247 4Fe-4S dicluster domain CHD54_RS10395 PF14711 Respiratory nitrate reductase beta C-terminal CHD54_RS10400 PF02613 Nitrate reductase delta subunit CHD54_RS10405 PF02665 Nitrate reductase gamma subunit CHD54_RS10430 PF01842 ACT domain CHD54_RS10430 PF00551 Formyl transferase CHD54_RS10435 PF02810 SEC-C motif CHD54_RS10440 PF01734 Patatin-like phospholipase CHD54_RS10445 PF00072 Response regulator receiver domain CHD54_RS10450 PF00483 Nucleotidyl transferase CHD54_RS10455 PF00816 H-NS histone family CHD54_RS10460 PF00265 Thymidine kinase CHD54_RS10465 PF00465 Iron-containing alcohol dehydrogenase CHD54_RS10465 PF00171 Aldehyde dehydrogenase family CHD54_RS10470 PF01914 MarC family integral membrane protein CHD54_RS10480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHD54_RS10485 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS10490 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS10490 PF12911 N-terminal TM domain of oligopeptide transport permease C CHD54_RS10495 PF00005 ABC transporter CHD54_RS10495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHD54_RS10500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHD54_RS10500 PF00005 ABC transporter CHD54_RS10505 PF00027 Cyclic nucleotide-binding domain CHD54_RS10505 PF00520 Ion transport protein CHD54_RS10510 PF04269 Protein of unknown function, DUF440 CHD54_RS10515 PF13091 PLD-like domain CHD54_RS10515 PF13396 Phospholipase_D-nuclease N-terminal CHD54_RS10525 PF03795 YCII-related domain CHD54_RS10530 PF03544 Gram-negative bacterial TonB protein C-terminal CHD54_RS10535 PF03061 Thioesterase superfamily CHD54_RS10540 PF04279 Intracellular septation protein A CHD54_RS10550 PF03692 Putative zinc- or iron-chelating domain CHD54_RS10560 PF05067 Manganese containing catalase CHD54_RS10565 PF05974 Domain of unknown function (DUF892) CHD54_RS10570 PF05974 Domain of unknown function (DUF892) CHD54_RS10575 PF10685 Stress-induced bacterial acidophilic repeat motif CHD54_RS10580 PF00290 Tryptophan synthase alpha chain CHD54_RS10585 PF00291 Pyridoxal-phosphate dependent enzyme CHD54_RS10590 PF00218 Indole-3-glycerol phosphate synthase CHD54_RS10590 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CHD54_RS10595 PF00117 Glutamine amidotransferase class-I CHD54_RS10595 PF02885 Glycosyl transferase family, helical bundle domain CHD54_RS10595 PF00591 Glycosyl transferase family, a/b domain CHD54_RS10600 PF00425 chorismate binding enzyme CHD54_RS10600 PF04715 Anthranilate synthase component I, N terminal region CHD54_RS10605 PF08255 Trp-operon Leader Peptide CHD54_RS10610 PF02811 PHP domain CHD54_RS10615 PF01300 Telomere recombination CHD54_RS10620 PF00849 RNA pseudouridylate synthase CHD54_RS10620 PF01479 S4 domain CHD54_RS10625 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CHD54_RS10630 PF00106 short chain dehydrogenase CHD54_RS10635 PF08496 Peptidase family S49 N-terminal CHD54_RS10635 PF01343 Peptidase family S49 CHD54_RS10640 PF10692 Protein of unknown function (DUF2498) CHD54_RS10645 PF01396 Topoisomerase DNA binding C4 zinc finger CHD54_RS10645 PF08272 Topoisomerase I zinc-ribbon-like CHD54_RS10645 PF01131 DNA topoisomerase CHD54_RS10645 PF01751 Toprim domain CHD54_RS10650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS10650 PF03466 LysR substrate binding domain CHD54_RS10670 PF00694 Aconitase C-terminal domain CHD54_RS10670 PF00330 Aconitase family (aconitate hydratase) CHD54_RS10675 PF00925 GTP cyclohydrolase II CHD54_RS10680 PF01569 PAP2 superfamily CHD54_RS10685 PF06305 Lipopolysaccharide assembly protein A domain CHD54_RS10690 PF18073 Rubredoxin metal binding domain CHD54_RS10695 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CHD54_RS10700 PF01253 Translation initiation factor SUI1 CHD54_RS10705 PF05433 Glycine zipper 2TM domain CHD54_RS10710 PF00455 DeoR C terminal sensor domain CHD54_RS10710 PF08220 DeoR-like helix-turn-helix domain CHD54_RS10720 PF00563 EAL domain CHD54_RS10720 PF00990 Diguanylate cyclase, GGDEF domain CHD54_RS10720 PF13426 PAS domain CHD54_RS10730 PF08206 Ribonuclease B OB domain CHD54_RS10730 PF00773 RNB domain CHD54_RS10730 PF00575 S1 RNA binding domain CHD54_RS10730 PF17876 Cold shock domain CHD54_RS10755 PF00005 ABC transporter CHD54_RS10760 PF00005 ABC transporter CHD54_RS10760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHD54_RS10765 PF12911 N-terminal TM domain of oligopeptide transport permease C CHD54_RS10765 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS10820 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS10825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHD54_RS10830 PF02954 Bacterial regulatory protein, Fis family CHD54_RS10830 PF00158 Sigma-54 interaction domain CHD54_RS10835 PF04012 PspA/IM30 family CHD54_RS10840 PF06667 Phage shock protein B CHD54_RS10845 PF04024 PspC domain CHD54_RS10850 PF09584 Phage shock protein PspD (Phageshock_PspD) CHD54_RS10855 PF00581 Rhodanese-like domain CHD54_RS10860 PF04317 YcjX-like family, DUF463 CHD54_RS10865 PF05128 Domain of unknown function (DUF697) CHD54_RS10870 PF00158 Sigma-54 interaction domain CHD54_RS10870 PF18024 Helix-turn-helix domain CHD54_RS10875 PF08534 Redoxin CHD54_RS10880 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CHD54_RS10880 PF13378 Enolase C-terminal domain-like CHD54_RS10885 PF00246 Zinc carboxypeptidase CHD54_RS10890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHD54_RS10900 PF00248 Aldo/keto reductase family CHD54_RS10905 PF03466 LysR substrate binding domain CHD54_RS10905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS10910 PF07690 Major Facilitator Superfamily CHD54_RS10945 PF03466 LysR substrate binding domain CHD54_RS10945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS10960 PF00005 ABC transporter CHD54_RS10960 PF17912 MalK OB fold domain CHD54_RS10960 PF03459 TOBE domain CHD54_RS10975 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS10980 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS10985 PF00294 pfkB family carbohydrate kinase CHD54_RS10995 PF00440 Bacterial regulatory proteins, tetR family CHD54_RS11005 PF06445 GyrI-like small molecule binding domain CHD54_RS11005 PF12833 Helix-turn-helix domain CHD54_RS11030 PF08534 Redoxin CHD54_RS11050 PF00924 Mechanosensitive ion channel CHD54_RS11055 PF10749 Protein of unknown function (DUF2534) CHD54_RS11060 PF00582 Universal stress protein family CHD54_RS11065 PF13545 Crp-like helix-turn-helix domain CHD54_RS11065 PF00027 Cyclic nucleotide-binding domain CHD54_RS11070 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CHD54_RS11070 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CHD54_RS11075 PF01713 Smr domain CHD54_RS11085 PF00672 HAMP domain CHD54_RS11085 PF02203 Tar ligand binding domain homologue CHD54_RS11085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHD54_RS11090 PF01544 CorA-like Mg2+ transporter protein CHD54_RS11100 PF00271 Helicase conserved C-terminal domain CHD54_RS11100 PF00270 DEAD/DEAH box helicase CHD54_RS11100 PF03880 DbpA RNA binding domain CHD54_RS11105 PF01171 PP-loop family CHD54_RS11145 PF00893 Small Multidrug Resistance protein CHD54_RS11150 PF00582 Universal stress protein family CHD54_RS11155 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CHD54_RS11155 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CHD54_RS11155 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CHD54_RS11155 PF10371 Domain of unknown function CHD54_RS11155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHD54_RS11165 PF03891 Domain of unknown function (DUF333) CHD54_RS11170 PF03724 META domain CHD54_RS11175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHD54_RS11175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHD54_RS11180 PF11739 Dicarboxylate transport CHD54_RS11185 PF13617 YnbE-like lipoprotein CHD54_RS11190 PF07027 Protein of unknown function (DUF1318) CHD54_RS11200 PF02525 Flavodoxin-like fold CHD54_RS11205 PF11898 Domain of unknown function (DUF3418) CHD54_RS11205 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CHD54_RS11205 PF00271 Helicase conserved C-terminal domain CHD54_RS11205 PF00270 DEAD/DEAH box helicase CHD54_RS11205 PF04408 Helicase associated domain (HA2) CHD54_RS11210 PF02698 DUF218 domain CHD54_RS11215 PF01292 Prokaryotic cytochrome b561 CHD54_RS11220 PF08242 Methyltransferase domain CHD54_RS11225 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS11235 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS11240 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHD54_RS11280 PF02583 Metal-sensitive transcriptional repressor CHD54_RS11285 PF00107 Zinc-binding dehydrogenase CHD54_RS11285 PF08240 Alcohol dehydrogenase GroES-like domain CHD54_RS11300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS11300 PF03466 LysR substrate binding domain CHD54_RS11305 PF07063 Domain of unknown function (DUF1338) CHD54_RS11310 PF00135 Carboxylesterase family CHD54_RS11315 PF04349 Periplasmic glucan biosynthesis protein, MdoG CHD54_RS11320 PF04264 YceI-like domain CHD54_RS11325 PF01070 FMN-dependent dehydrogenase CHD54_RS11330 PF00583 Acetyltransferase (GNAT) family CHD54_RS11335 PF00455 DeoR C terminal sensor domain CHD54_RS11335 PF08220 DeoR-like helix-turn-helix domain CHD54_RS11380 PF13358 DDE superfamily endonuclease CHD54_RS11380 PF13592 Winged helix-turn helix CHD54_RS11385 PF16970 Type-1 fimbrial protein, A CHD54_RS11390 PF02753 Pili assembly chaperone PapD, C-terminal domain CHD54_RS11390 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CHD54_RS11395 PF00577 Outer membrane usher protein CHD54_RS11395 PF13954 PapC N-terminal domain CHD54_RS11395 PF13953 PapC C-terminal domain CHD54_RS11400 PF00419 Fimbrial protein CHD54_RS11400 PF09222 Fimbrial adhesin F17-AG, lectin domain CHD54_RS11425 PF01546 Peptidase family M20/M25/M40 CHD54_RS11425 PF07687 Peptidase dimerisation domain CHD54_RS11430 PF03458 UPF0126 domain CHD54_RS11440 PF05343 M42 glutamyl aminopeptidase CHD54_RS11445 PF13302 Acetyltransferase (GNAT) domain CHD54_RS11450 PF18836 Beta solenoid repeat from YDCK CHD54_RS11455 PF03595 Voltage-dependent anion channel CHD54_RS11460 PF03848 Tellurite resistance protein TehB CHD54_RS11465 PF11769 Protein of unknown function (DUF3313) CHD54_RS11470 PF03594 Benzoate membrane transport protein CHD54_RS11475 PF07883 Cupin domain CHD54_RS11475 PF01381 Helix-turn-helix CHD54_RS11480 PF01136 Peptidase family U32 CHD54_RS11480 PF12392 Collagenase CHD54_RS11485 PF10829 Protein of unknown function (DUF2554) CHD54_RS11495 PF02322 Cytochrome bd terminal oxidase subunit II CHD54_RS11500 PF01654 Cytochrome bd terminal oxidase subunit I CHD54_RS11520 PF01427 D-ala-D-ala dipeptidase CHD54_RS11525 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS11525 PF00155 Aminotransferase class I and II CHD54_RS11530 PF00171 Aldehyde dehydrogenase family CHD54_RS11540 PF10753 Toxin GhoT_OrtT CHD54_RS11560 PF10735 Protein of unknown function (DUF2526) CHD54_RS11565 PF04657 Putative inner membrane exporter, YdcZ CHD54_RS11575 PF16884 N-terminal domain of oxidoreductase CHD54_RS11575 PF00107 Zinc-binding dehydrogenase CHD54_RS11580 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS11580 PF07729 FCD domain CHD54_RS11585 PF07715 TonB-dependent Receptor Plug Domain CHD54_RS11585 PF00593 TonB dependent receptor CHD54_RS11595 PF06004 Bacterial protein of unknown function (DUF903) CHD54_RS11600 PF00324 Amino acid permease CHD54_RS11615 PF00797 N-acetyltransferase CHD54_RS11625 PF02665 Nitrate reductase gamma subunit CHD54_RS11630 PF02613 Nitrate reductase delta subunit CHD54_RS11635 PF13247 4Fe-4S dicluster domain CHD54_RS11635 PF14711 Respiratory nitrate reductase beta C-terminal CHD54_RS11640 PF01568 Molydopterin dinucleotide binding domain CHD54_RS11640 PF14710 Respiratory nitrate reductase alpha N-terminal CHD54_RS11640 PF00384 Molybdopterin oxidoreductase CHD54_RS11645 PF07690 Major Facilitator Superfamily CHD54_RS11650 PF00440 Bacterial regulatory proteins, tetR family CHD54_RS11655 PF07690 Major Facilitator Superfamily CHD54_RS11665 PF00267 Gram-negative porin CHD54_RS11675 PF00892 EamA-like transporter family CHD54_RS11680 PF01568 Molydopterin dinucleotide binding domain CHD54_RS11680 PF00384 Molybdopterin oxidoreductase CHD54_RS11680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHD54_RS11685 PF01568 Molydopterin dinucleotide binding domain CHD54_RS11685 PF00384 Molybdopterin oxidoreductase CHD54_RS11685 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHD54_RS11690 PF12800 4Fe-4S binding domain CHD54_RS11690 PF09163 Formate dehydrogenase N, transmembrane CHD54_RS11690 PF13247 4Fe-4S dicluster domain CHD54_RS11695 PF01292 Prokaryotic cytochrome b561 CHD54_RS11700 PF08240 Alcohol dehydrogenase GroES-like domain CHD54_RS11700 PF00107 Zinc-binding dehydrogenase CHD54_RS11705 PF00390 Malic enzyme, N-terminal domain CHD54_RS11705 PF03949 Malic enzyme, NAD binding domain CHD54_RS11710 PF08136 30S ribosomal protein subunit S22 family CHD54_RS11715 PF10684 Putative biofilm-dependent modulation protein CHD54_RS11720 PF02566 OsmC-like protein CHD54_RS11725 PF06411 HdeA/HdeB family CHD54_RS11735 PF11941 Domain of unknown function (DUF3459) CHD54_RS11735 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CHD54_RS11735 PF00128 Alpha amylase, catalytic domain CHD54_RS11740 PF00128 Alpha amylase, catalytic domain CHD54_RS11745 PF00128 Alpha amylase, catalytic domain CHD54_RS11745 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CHD54_RS11750 PF00155 Aminotransferase class I and II CHD54_RS11755 PF03553 Na+/H+ antiporter family CHD54_RS11760 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS11780 PF01494 FAD binding domain CHD54_RS11785 PF07690 Major Facilitator Superfamily CHD54_RS11795 PF07690 Major Facilitator Superfamily CHD54_RS11800 PF00107 Zinc-binding dehydrogenase CHD54_RS11800 PF08240 Alcohol dehydrogenase GroES-like domain CHD54_RS11805 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS11805 PF07729 FCD domain CHD54_RS11815 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CHD54_RS11815 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CHD54_RS11820 PF00374 Nickel-dependent hydrogenase CHD54_RS11825 PF01292 Prokaryotic cytochrome b561 CHD54_RS11830 PF01750 Hydrogenase maturation protease CHD54_RS11835 PF01455 HupF/HypC family CHD54_RS11845 PF04809 HupH hydrogenase expression protein, C-terminal conserved region CHD54_RS11855 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CHD54_RS11860 PF00267 Gram-negative porin CHD54_RS11870 PF01062 Bestrophin, RFP-TM, chloride channel CHD54_RS11875 PF01232 Mannitol dehydrogenase Rossmann domain CHD54_RS11875 PF08125 Mannitol dehydrogenase C-terminal domain CHD54_RS11880 PF13811 Domain of unknown function (DUF4186) CHD54_RS11885 PF04960 Glutaminase CHD54_RS11890 PF00171 Aldehyde dehydrogenase family CHD54_RS11895 PF03466 LysR substrate binding domain CHD54_RS11895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS11900 PF07690 Major Facilitator Superfamily CHD54_RS11905 PF01914 MarC family integral membrane protein CHD54_RS11910 PF01047 MarR family CHD54_RS11915 PF12833 Helix-turn-helix domain CHD54_RS11920 PF13999 MarB protein CHD54_RS11925 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS11925 PF00072 Response regulator receiver domain CHD54_RS11935 PF00892 EamA-like transporter family CHD54_RS11940 PF07690 Major Facilitator Superfamily CHD54_RS11955 PF04076 Bacterial OB fold (BOF) protein CHD54_RS11960 PF02464 Competence-damaged protein CHD54_RS11965 PF10685 Stress-induced bacterial acidophilic repeat motif CHD54_RS11975 PF01432 Peptidase family M3 CHD54_RS11980 PF00106 short chain dehydrogenase CHD54_RS11985 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS11985 PF07729 FCD domain CHD54_RS11990 PF14001 YdfZ protein CHD54_RS11995 PF08125 Mannitol dehydrogenase C-terminal domain CHD54_RS11995 PF01232 Mannitol dehydrogenase Rossmann domain CHD54_RS12005 PF02614 Glucuronate isomerase CHD54_RS12010 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CHD54_RS12010 PF13378 Enolase C-terminal domain-like CHD54_RS12015 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CHD54_RS12020 PF06932 Protein of unknown function (DUF1283) CHD54_RS12025 PF13302 Acetyltransferase (GNAT) domain CHD54_RS12030 PF06788 Uncharacterised protein family (UPF0257) CHD54_RS12035 PF06649 Protein of unknown function (DUF1161) CHD54_RS12040 PF01568 Molydopterin dinucleotide binding domain CHD54_RS12040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHD54_RS12040 PF00384 Molybdopterin oxidoreductase CHD54_RS12045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHD54_RS12045 PF01568 Molydopterin dinucleotide binding domain CHD54_RS12045 PF00384 Molybdopterin oxidoreductase CHD54_RS12050 PF13247 4Fe-4S dicluster domain CHD54_RS12050 PF12800 4Fe-4S binding domain CHD54_RS12055 PF04976 DMSO reductase anchor subunit (DmsC) CHD54_RS12060 PF02613 Nitrate reductase delta subunit CHD54_RS12065 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS12070 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CHD54_RS12075 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS12080 PF00005 ABC transporter CHD54_RS12080 PF00571 CBS domain CHD54_RS12085 PF00654 Voltage gated chloride channel CHD54_RS12095 PF00480 ROK family CHD54_RS12100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS12100 PF03466 LysR substrate binding domain CHD54_RS12105 PF07690 Major Facilitator Superfamily CHD54_RS12115 PF00089 Trypsin CHD54_RS12120 PF00893 Small Multidrug Resistance protein CHD54_RS12125 PF00893 Small Multidrug Resistance protein CHD54_RS12135 PF01594 AI-2E family transporter CHD54_RS12140 PF02233 NAD(P) transhydrogenase beta subunit CHD54_RS12145 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CHD54_RS12145 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CHD54_RS12145 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CHD54_RS12150 PF07338 Protein of unknown function (DUF1471) CHD54_RS12155 PF13520 Amino acid permease CHD54_RS12160 PF06942 GlpM protein CHD54_RS12165 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS12165 PF00072 Response regulator receiver domain CHD54_RS12170 PF00267 Gram-negative porin CHD54_RS12175 PF01979 Amidohydrolase family CHD54_RS12175 PF13382 Adenine deaminase C-terminal domain CHD54_RS12180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS12180 PF00672 HAMP domain CHD54_RS12180 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS12185 PF05472 DNA replication terminus site-binding protein (Ter protein) CHD54_RS12190 PF10415 Fumarase C C-terminus CHD54_RS12190 PF00206 Lyase CHD54_RS12195 PF05683 Fumarase C-terminus CHD54_RS12195 PF05681 Fumarate hydratase (Fumerase) CHD54_RS12200 PF01238 Phosphomannose isomerase type I CHD54_RS12205 PF06097 Bacterial protein of unknown function (DUF945) CHD54_RS12210 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CHD54_RS12210 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS12215 PF02378 Phosphotransferase system, EIIC CHD54_RS12215 PF00367 phosphotransferase system, EIIB CHD54_RS12220 PF00155 Aminotransferase class I and II CHD54_RS12225 PF00962 Adenosine/AMP deaminase CHD54_RS12230 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CHD54_RS12230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CHD54_RS12240 PF05321 Haemolysin expression modulating protein CHD54_RS12245 PF10754 Protein of unknown function (DUF2569) CHD54_RS12250 PF02508 Rnf-Nqr subunit, membrane protein CHD54_RS12255 PF04060 Putative Fe-S cluster CHD54_RS12260 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CHD54_RS12260 PF12838 4Fe-4S dicluster domain CHD54_RS12260 PF10531 SLBB domain CHD54_RS12260 PF13375 RnfC Barrel sandwich hybrid domain CHD54_RS12265 PF03116 NQR2, RnfD, RnfE family CHD54_RS12270 PF04205 FMN-binding domain CHD54_RS12275 PF02508 Rnf-Nqr subunit, membrane protein CHD54_RS12280 PF10576 Iron-sulfur binding domain of endonuclease III CHD54_RS12280 PF00633 Helix-hairpin-helix motif CHD54_RS12280 PF00730 HhH-GPD superfamily base excision DNA repair protein CHD54_RS12285 PF00854 POT family CHD54_RS12290 PF02798 Glutathione S-transferase, N-terminal domain CHD54_RS12290 PF00043 Glutathione S-transferase, C-terminal domain CHD54_RS12295 PF08543 Phosphomethylpyrimidine kinase CHD54_RS12300 PF01479 S4 domain CHD54_RS12300 PF00579 tRNA synthetases class I (W and Y) CHD54_RS12305 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CHD54_RS12305 PF01243 Pyridoxamine 5'-phosphate oxidase CHD54_RS12310 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CHD54_RS12315 PF03702 Anhydro-N-acetylmuramic acid kinase CHD54_RS12320 PF05433 Glycine zipper 2TM domain CHD54_RS12325 PF01047 MarR family CHD54_RS12330 PF07869 Protein of unknown function (DUF1656) CHD54_RS12335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHD54_RS12335 PF00529 HlyD membrane-fusion protein of T1SS CHD54_RS12340 PF04632 Fusaric acid resistance protein family CHD54_RS12345 PF00080 Copper/zinc superoxide dismutase (SODC) CHD54_RS12350 PF00248 Aldo/keto reductase family CHD54_RS12355 PF06945 Protein of unknown function (DUF1289) CHD54_RS12360 PF16925 Tetracyclin repressor-like, C-terminal domain CHD54_RS12360 PF00440 Bacterial regulatory proteins, tetR family CHD54_RS12365 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CHD54_RS12370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CHD54_RS12375 PF00929 Exonuclease CHD54_RS12380 PF00462 Glutaredoxin CHD54_RS12385 PF00877 NlpC/P60 family CHD54_RS12390 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CHD54_RS12390 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CHD54_RS12400 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS12405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS12405 PF03466 LysR substrate binding domain CHD54_RS12410 PF07690 Major Facilitator Superfamily CHD54_RS12420 PF00677 Lumazine binding domain CHD54_RS12425 PF01554 MatE CHD54_RS12445 PF01311 Bacterial export proteins, family 1 CHD54_RS12450 PF01313 Bacterial export proteins, family 3 CHD54_RS12455 PF00813 FliP family CHD54_RS12460 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CHD54_RS12475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHD54_RS12475 PF18269 T3SS EscN ATPase C-terminal domain CHD54_RS12480 PF00771 FHIPEP family CHD54_RS12490 PF07201 HrpJ-like domain CHD54_RS12505 PF01514 Secretory protein of YscJ/FliF family CHD54_RS12545 PF05802 Enterobacterial EspB protein CHD54_RS12550 PF04888 Secretion system effector C (SseC) like family CHD54_RS12560 PF03433 EspA-like secreted protein CHD54_RS12580 PF00263 Bacterial type II and III secretion system protein CHD54_RS12580 PF03958 Bacterial type II/III secretion system short domain CHD54_RS12600 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS12600 PF00072 Response regulator receiver domain CHD54_RS12605 PF13411 MerR HTH family regulatory protein CHD54_RS12610 PF08349 Protein of unknown function (DUF1722) CHD54_RS12615 PF10965 Protein of unknown function (DUF2767) CHD54_RS12620 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS12620 PF00072 Response regulator receiver domain CHD54_RS12625 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS12625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS12630 PF13247 4Fe-4S dicluster domain CHD54_RS12635 PF03916 Polysulphide reductase, NrfD CHD54_RS12640 PF01568 Molydopterin dinucleotide binding domain CHD54_RS12640 PF00384 Molybdopterin oxidoreductase CHD54_RS12640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHD54_RS12650 PF00224 Pyruvate kinase, barrel domain CHD54_RS12650 PF02887 Pyruvate kinase, alpha/beta domain CHD54_RS12655 PF04728 Lipoprotein leucine-zipper CHD54_RS12660 PF03734 L,D-transpeptidase catalytic domain CHD54_RS12660 PF01476 LysM domain CHD54_RS12660 PF17969 L,D-transpeptidase C-terminal domain CHD54_RS12665 PF02657 Fe-S metabolism associated domain CHD54_RS12670 PF00266 Aminotransferase class-V CHD54_RS12675 PF01458 Uncharacterized protein family (UPF0051) CHD54_RS12680 PF00005 ABC transporter CHD54_RS12685 PF01458 Uncharacterized protein family (UPF0051) CHD54_RS12690 PF01521 Iron-sulphur cluster biosynthesis CHD54_RS12695 PF00375 Sodium:dicarboxylate symporter family CHD54_RS12700 PF15930 Domain of unknown function CHD54_RS12705 PF03061 Thioesterase superfamily CHD54_RS12710 PF01565 FAD binding domain CHD54_RS12710 PF02913 FAD linked oxidases, C-terminal domain CHD54_RS12710 PF13183 4Fe-4S dicluster domain CHD54_RS12715 PF01594 AI-2E family transporter CHD54_RS12730 PF08965 Domain of unknown function (DUF1870) CHD54_RS12735 PF07690 Major Facilitator Superfamily CHD54_RS12740 PF07690 Major Facilitator Superfamily CHD54_RS12745 PF08501 Shikimate dehydrogenase substrate binding domain CHD54_RS12745 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CHD54_RS12750 PF01487 Type I 3-dehydroquinase CHD54_RS12755 PF01144 Coenzyme A transferase CHD54_RS12760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHD54_RS12760 PF02770 Acyl-CoA dehydrogenase, middle domain CHD54_RS12760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHD54_RS12765 PF12833 Helix-turn-helix domain CHD54_RS12765 PF02311 AraC-like ligand binding domain CHD54_RS12770 PF01012 Electron transfer flavoprotein domain CHD54_RS12775 PF00766 Electron transfer flavoprotein FAD-binding domain CHD54_RS12775 PF01012 Electron transfer flavoprotein domain CHD54_RS12780 PF01494 FAD binding domain CHD54_RS12790 PF00501 AMP-binding enzyme CHD54_RS12790 PF13193 AMP-binding enzyme C-terminal domain CHD54_RS12795 PF00391 PEP-utilising enzyme, mobile domain CHD54_RS12795 PF02896 PEP-utilising enzyme, TIM barrel domain CHD54_RS12795 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CHD54_RS12800 PF03618 Kinase/pyrophosphorylase CHD54_RS12805 PF00793 DAHP synthetase I family CHD54_RS12810 PF10636 Hemin uptake protein hemP CHD54_RS12815 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CHD54_RS12820 PF00563 EAL domain CHD54_RS12825 PF00877 NlpC/P60 family CHD54_RS12830 PF00005 ABC transporter CHD54_RS12835 PF00255 Glutathione peroxidase CHD54_RS12840 PF01032 FecCD transport family CHD54_RS12845 PF00216 Bacterial DNA-binding protein CHD54_RS12850 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CHD54_RS12850 PF03147 Ferredoxin-fold anticodon binding domain CHD54_RS12850 PF03484 tRNA synthetase B5 domain CHD54_RS12850 PF03483 B3/4 domain CHD54_RS12850 PF01588 Putative tRNA binding domain CHD54_RS12855 PF01409 tRNA synthetases class II core domain (F) CHD54_RS12855 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CHD54_RS12865 PF00453 Ribosomal protein L20 CHD54_RS12870 PF01632 Ribosomal protein L35 CHD54_RS12875 PF05198 Translation initiation factor IF-3, N-terminal domain CHD54_RS12875 PF00707 Translation initiation factor IF-3, C-terminal domain CHD54_RS12880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CHD54_RS12880 PF02824 TGS domain CHD54_RS12880 PF03129 Anticodon binding domain CHD54_RS12880 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CHD54_RS12890 PF00717 Peptidase S24-like CHD54_RS12920 PF01223 DNA/RNA non-specific endonuclease CHD54_RS12935 PF04338 Protein of unknown function, DUF481 CHD54_RS12940 PF00294 pfkB family carbohydrate kinase CHD54_RS12945 PF11080 Endoribonuclease GhoS CHD54_RS12950 PF03881 Fructosamine kinase CHD54_RS12955 PF14002 YniB-like protein CHD54_RS12960 PF13419 Haloacid dehalogenase-like hydrolase CHD54_RS12965 PF04307 LexA-binding, inner membrane-associated putative hydrolase CHD54_RS12970 PF00375 Sodium:dicarboxylate symporter family CHD54_RS12975 PF10729 Cell division activator CedA CHD54_RS12980 PF00199 Catalase CHD54_RS12980 PF18011 C-terminal domain found in long catalases CHD54_RS12980 PF06628 Catalase-related immune-responsive CHD54_RS12985 PF04794 YdjC-like protein CHD54_RS12990 PF11975 Family 4 glycosyl hydrolase C-terminal domain CHD54_RS12990 PF02056 Family 4 glycosyl hydrolase CHD54_RS12995 PF12833 Helix-turn-helix domain CHD54_RS12995 PF07883 Cupin domain CHD54_RS13000 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CHD54_RS13005 PF02378 Phosphotransferase system, EIIC CHD54_RS13010 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CHD54_RS13020 PF04355 SmpA / OmlA family CHD54_RS13025 PF02540 NAD synthase CHD54_RS13035 PF07813 LTXXQ motif family protein CHD54_RS13040 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CHD54_RS13045 PF04996 Succinylarginine dihydrolase CHD54_RS13050 PF00171 Aldehyde dehydrogenase family CHD54_RS13055 PF04958 Arginine N-succinyltransferase beta subunit CHD54_RS13060 PF00202 Aminotransferase class-III CHD54_RS13065 PF03372 Endonuclease/Exonuclease/phosphatase family CHD54_RS13070 PF00293 NUDIX domain CHD54_RS13075 PF07383 Protein of unknown function (DUF1496) CHD54_RS13080 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CHD54_RS13080 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CHD54_RS13085 PF01131 DNA topoisomerase CHD54_RS13085 PF01751 Toprim domain CHD54_RS13090 PF00586 AIR synthase related protein, N-terminal domain CHD54_RS13090 PF02769 AIR synthase related protein, C-terminal domain CHD54_RS13095 PF00881 Nitroreductase family CHD54_RS13100 PF01343 Peptidase family S49 CHD54_RS13105 PF00710 Asparaginase, N-terminal CHD54_RS13105 PF17763 Glutaminase/Asparaginase C-terminal domain CHD54_RS13110 PF00857 Isochorismatase family CHD54_RS13115 PF07023 Protein of unknown function (DUF1315) CHD54_RS13120 PF01641 SelR domain CHD54_RS13125 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CHD54_RS13125 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CHD54_RS13130 PF01263 Aldose 1-epimerase CHD54_RS13135 PF04055 Radical SAM superfamily CHD54_RS13135 PF13186 Iron-sulfur cluster-binding domain CHD54_RS13140 PF06629 MltA-interacting protein MipA CHD54_RS13145 PF08298 PrkA AAA domain CHD54_RS13145 PF06798 PrkA serine protein kinase C-terminal domain CHD54_RS13155 PF04285 Protein of unknown function (DUF444) CHD54_RS13170 PF04073 Aminoacyl-tRNA editing domain CHD54_RS13185 PF04284 Protein of unknown function (DUF441) CHD54_RS13190 PF12833 Helix-turn-helix domain CHD54_RS13190 PF02311 AraC-like ligand binding domain CHD54_RS13195 PF07690 Major Facilitator Superfamily CHD54_RS13200 PF04343 Protein of unknown function, DUF488 CHD54_RS13210 PF03891 Domain of unknown function (DUF333) CHD54_RS13220 PF04226 Transglycosylase associated protein CHD54_RS13235 PF08956 Domain of unknown function (DUF1869) CHD54_RS13240 PF09313 Domain of unknown function (DUF1971) CHD54_RS13245 PF01810 LysE type translocator CHD54_RS13250 PF01817 Chorismate mutase type II CHD54_RS13265 PF00376 MerR family regulatory protein CHD54_RS13265 PF09278 MerR, DNA binding CHD54_RS13275 PF01909 Nucleotidyltransferase domain CHD54_RS13275 PF13427 Domain of unknown function (DUF4111) CHD54_RS13280 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CHD54_RS13295 PF00924 Mechanosensitive ion channel CHD54_RS13300 PF00005 ABC transporter CHD54_RS13305 PF00005 ABC transporter CHD54_RS13310 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS13310 PF12911 N-terminal TM domain of oligopeptide transport permease C CHD54_RS13315 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS13320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHD54_RS13330 PF01292 Prokaryotic cytochrome b561 CHD54_RS13340 PF00011 Hsp20/alpha crystallin family CHD54_RS13365 PF06316 Enterobacterial Ail/Lom protein CHD54_RS13375 PF00313 'Cold-shock' DNA-binding domain CHD54_RS13380 PF00652 Ricin-type beta-trefoil lectin domain CHD54_RS13385 PF06183 DinI-like family CHD54_RS13390 PF03797 Autotransporter beta-domain CHD54_RS13390 PF02395 Immunoglobulin A1 protease CHD54_RS13400 PF04151 Bacterial pre-peptidase C-terminal domain CHD54_RS13410 PF06291 Bor protein CHD54_RS13415 PF01278 Omptin family CHD54_RS13425 PF14496 C-terminal novel E3 ligase, LRR-interacting CHD54_RS13425 PF12468 Type III secretion system leucine rich repeat protein CHD54_RS13445 PF14496 C-terminal novel E3 ligase, LRR-interacting CHD54_RS13445 PF12468 Type III secretion system leucine rich repeat protein CHD54_RS13470 PF00589 Phage integrase family CHD54_RS13470 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain CHD54_RS13475 PF00180 Isocitrate/isopropylmalate dehydrogenase CHD54_RS13480 PF00849 RNA pseudouridylate synthase CHD54_RS13490 PF00293 NUDIX domain CHD54_RS13500 PF04356 Protein of unknown function (DUF489) CHD54_RS13505 PF00206 Lyase CHD54_RS13505 PF08328 Adenylosuccinate lyase C-terminal CHD54_RS13510 PF00072 Response regulator receiver domain CHD54_RS13510 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS13515 PF08918 PhoQ Sensor CHD54_RS13515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS13520 PF08007 Cupin superfamily protein CHD54_RS13525 PF01546 Peptidase family M20/M25/M40 CHD54_RS13525 PF07687 Peptidase dimerisation domain CHD54_RS13530 PF00005 ABC transporter CHD54_RS13530 PF08402 TOBE domain CHD54_RS13535 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS13540 PF06767 Sif protein CHD54_RS13545 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS13550 PF13416 Bacterial extracellular solute-binding protein CHD54_RS13555 PF02146 Sir2 family CHD54_RS13560 PF00480 ROK family CHD54_RS13565 PF12704 MacB-like periplasmic core domain CHD54_RS13565 PF02687 FtsX-like permease family CHD54_RS13570 PF00005 ABC transporter CHD54_RS13575 PF12704 MacB-like periplasmic core domain CHD54_RS13575 PF02687 FtsX-like permease family CHD54_RS13580 PF00270 DEAD/DEAH box helicase CHD54_RS13580 PF03461 TRCF domain CHD54_RS13580 PF17757 UvrB interaction domain CHD54_RS13580 PF02559 CarD-like/TRCF domain CHD54_RS13580 PF00271 Helicase conserved C-terminal domain CHD54_RS13585 PF03734 L,D-transpeptidase catalytic domain CHD54_RS13585 PF01476 LysM domain CHD54_RS13585 PF17969 L,D-transpeptidase C-terminal domain CHD54_RS13590 PF07338 Protein of unknown function (DUF1471) CHD54_RS13595 PF00440 Bacterial regulatory proteins, tetR family CHD54_RS13600 PF05433 Glycine zipper 2TM domain CHD54_RS13605 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS13610 PF05728 Uncharacterised protein family (UPF0227) CHD54_RS13615 PF00933 Glycosyl hydrolase family 3 N terminal domain CHD54_RS13620 PF01636 Phosphotransferase enzyme family CHD54_RS13625 PF13036 Peptidoglycan-synthase activator LpoB CHD54_RS13630 PF07233 Protein of unknown function (DUF1425) CHD54_RS13635 PF01230 HIT domain CHD54_RS13640 PF00593 TonB dependent receptor CHD54_RS13640 PF07715 TonB-dependent Receptor Plug Domain CHD54_RS13645 PF02378 Phosphotransferase system, EIIC CHD54_RS13645 PF00367 phosphotransferase system, EIIB CHD54_RS13650 PF01026 TatD related DNase CHD54_RS13655 PF09115 DNA polymerase III, delta subunit, C terminal CHD54_RS13660 PF02223 Thymidylate kinase CHD54_RS13665 PF02618 YceG-like family CHD54_RS13670 PF01063 Amino-transferase class IV CHD54_RS13680 PF00419 Fimbrial protein CHD54_RS13685 PF02753 Pili assembly chaperone PapD, C-terminal domain CHD54_RS13685 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CHD54_RS13690 PF13954 PapC N-terminal domain CHD54_RS13690 PF13953 PapC C-terminal domain CHD54_RS13690 PF00577 Outer membrane usher protein CHD54_RS13700 PF00419 Fimbrial protein CHD54_RS13710 PF00109 Beta-ketoacyl synthase, N-terminal domain CHD54_RS13710 PF02801 Beta-ketoacyl synthase, C-terminal domain CHD54_RS13715 PF00550 Phosphopantetheine attachment site CHD54_RS13725 PF00698 Acyl transferase domain CHD54_RS13730 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CHD54_RS13730 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CHD54_RS13735 PF02504 Fatty acid synthesis protein CHD54_RS13740 PF01783 Ribosomal L32p protein family CHD54_RS13745 PF02620 Large ribosomal RNA subunit accumulation protein YceD CHD54_RS13750 PF02545 Maf-like protein CHD54_RS13755 PF00849 RNA pseudouridylate synthase CHD54_RS13755 PF01479 S4 domain CHD54_RS13765 PF12111 Polyribonucleotide phosphorylase C terminal CHD54_RS13765 PF10150 Ribonuclease E/G family CHD54_RS13765 PF00575 S1 RNA binding domain CHD54_RS13770 PF00669 Bacterial flagellin N-terminal helical region CHD54_RS13775 PF00460 Flagella basal body rod protein CHD54_RS13775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHD54_RS13780 PF10135 Rod binding protein CHD54_RS13780 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CHD54_RS13785 PF02119 Flagellar P-ring protein CHD54_RS13790 PF02107 Flagellar L-ring protein CHD54_RS13795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHD54_RS13795 PF00460 Flagella basal body rod protein CHD54_RS13800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHD54_RS13800 PF00460 Flagella basal body rod protein CHD54_RS13805 PF07559 Flagellar basal body protein FlaE CHD54_RS13805 PF00460 Flagella basal body rod protein CHD54_RS13805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHD54_RS13810 PF13861 FlgD Tudor-like domain CHD54_RS13810 PF03963 Flagellar hook capping protein - N-terminal region CHD54_RS13810 PF13860 FlgD Ig-like domain CHD54_RS13815 PF00460 Flagella basal body rod protein CHD54_RS13815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHD54_RS13820 PF00460 Flagella basal body rod protein CHD54_RS13825 PF13144 Chaperone for flagella basal body P-ring formation CHD54_RS13830 PF04316 Anti-sigma-28 factor, FlgM CHD54_RS13835 PF05130 FlgN protein CHD54_RS13840 PF03023 Lipid II flippase MurJ CHD54_RS13845 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CHD54_RS13850 PF04337 Protein of unknown function, DUF480 CHD54_RS13855 PF13302 Acetyltransferase (GNAT) domain CHD54_RS13860 PF07690 Major Facilitator Superfamily CHD54_RS13865 PF13417 Glutathione S-transferase, N-terminal domain CHD54_RS13865 PF04399 Glutaredoxin 2, C terminal domain CHD54_RS13870 PF07273 Protein of unknown function (DUF1439) CHD54_RS13875 PF01979 Amidohydrolase family CHD54_RS13880 PF06183 DinI-like family CHD54_RS13885 PF13991 BssS protein family CHD54_RS13890 PF01266 FAD dependent oxidoreductase CHD54_RS13895 PF10968 Protein of unknown function (DUF2770) CHD54_RS13900 PF01292 Prokaryotic cytochrome b561 CHD54_RS13905 PF04264 YceI-like domain CHD54_RS13910 PF12368 Rhodanase C-terminal CHD54_RS13910 PF17773 UPF0176 acylphosphatase like domain CHD54_RS13910 PF00581 Rhodanese-like domain CHD54_RS13915 PF03279 Bacterial lipid A biosynthesis acyltransferase CHD54_RS13920 PF07690 Major Facilitator Superfamily CHD54_RS13925 PF13984 MsyB protein CHD54_RS13930 PF07119 Protein of unknown function (DUF1375) CHD54_RS13935 PF00535 Glycosyl transferase family 2 CHD54_RS13940 PF04349 Periplasmic glucan biosynthesis protein, MdoG CHD54_RS13950 PF01757 Acyltransferase family CHD54_RS13955 PF13091 PLD-like domain CHD54_RS13960 PF01661 Macro domain CHD54_RS13970 PF10610 Thin aggregative fimbriae synthesis protein CHD54_RS13975 PF07012 Curlin associated repeat CHD54_RS13980 PF07012 Curlin associated repeat CHD54_RS13995 PF10627 Curli assembly protein CsgE CHD54_RS14000 PF10614 Type VIII secretion system (T8SS), CsgF protein CHD54_RS14005 PF03783 Curli production assembly/transport component CsgG CHD54_RS14010 PF06496 Protein of unknown function (DUF1097) CHD54_RS14020 PF02613 Nitrate reductase delta subunit CHD54_RS14025 PF02811 PHP domain CHD54_RS14030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHD54_RS14050 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CHD54_RS14050 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CHD54_RS14055 PF07690 Major Facilitator Superfamily CHD54_RS14070 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CHD54_RS14075 PF00474 Sodium:solute symporter family CHD54_RS14080 PF01380 SIS domain CHD54_RS14080 PF01418 Helix-turn-helix domain, rpiR family CHD54_RS14090 PF00474 Sodium:solute symporter family CHD54_RS14095 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CHD54_RS14095 PF14850 DNA-binding domain of Proline dehydrogenase CHD54_RS14095 PF00171 Aldehyde dehydrogenase family CHD54_RS14095 PF01619 Proline dehydrogenase CHD54_RS14105 PF00440 Bacterial regulatory proteins, tetR family CHD54_RS14105 PF08362 YcdC-like protein, C-terminal region CHD54_RS14110 PF10685 Stress-induced bacterial acidophilic repeat motif CHD54_RS14115 PF03358 NADPH-dependent FMN reductase CHD54_RS14120 PF13993 YccJ-like protein CHD54_RS14125 PF00328 Histidine phosphatase superfamily (branch 2) CHD54_RS14130 PF00578 AhpC/TSA family CHD54_RS14135 PF06965 Na+/H+ antiporter 1 CHD54_RS14135 PF13462 Thioredoxin CHD54_RS14140 PF11412 Disulphide bond corrector protein DsbC CHD54_RS14140 PF13098 Thioredoxin-like domain CHD54_RS14140 PF02683 Cytochrome C biogenesis protein transmembrane region CHD54_RS14150 PF00226 DnaJ domain CHD54_RS14150 PF01556 DnaJ C terminal domain CHD54_RS14165 PF12706 Beta-lactamase superfamily domain CHD54_RS14175 PF07690 Major Facilitator Superfamily CHD54_RS14180 PF03328 HpcH/HpaI aldolase/citrate lyase family CHD54_RS14185 PF01557 Fumarylacetoacetate (FAA) hydrolase family CHD54_RS14190 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CHD54_RS14195 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CHD54_RS14200 PF00171 Aldehyde dehydrogenase family CHD54_RS14205 PF01557 Fumarylacetoacetate (FAA) hydrolase family CHD54_RS14210 PF01047 MarR family CHD54_RS14215 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CHD54_RS14215 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CHD54_RS14220 PF01613 Flavin reductase like domain CHD54_RS14225 PF00576 HIUase/Transthyretin family CHD54_RS14230 PF00072 Response regulator receiver domain CHD54_RS14230 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS14235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS14235 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS14240 PF03577 Peptidase family C69 CHD54_RS14250 PF13132 Domain of unknown function (DUF3950) CHD54_RS14255 PF05925 Enterobacterial virulence protein IpgD CHD54_RS14260 PF07824 Type III secretion chaperone domain CHD54_RS14275 PF00534 Glycosyl transferases group 1 CHD54_RS14295 PF13520 Amino acid permease CHD54_RS14300 PF00282 Pyridoxal-dependent decarboxylase conserved domain CHD54_RS14305 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHD54_RS14315 PF04960 Glutaminase CHD54_RS14325 PF09612 Bacterial protein of unknown function (HtrL_YibB) CHD54_RS14350 PF01027 Inhibitor of apoptosis-promoting Bax1 CHD54_RS14355 PF04358 DsrC like protein CHD54_RS14360 PF00708 Acylphosphatase CHD54_RS14370 PF10672 S-adenosylmethionine-dependent methyltransferase CHD54_RS14370 PF17785 PUA-like domain CHD54_RS14375 PF08755 Hemimethylated DNA-binding protein YccV like CHD54_RS14380 PF13380 CoA binding domain CHD54_RS14385 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CHD54_RS14390 PF02142 MGS-like domain CHD54_RS14395 PF00580 UvrD/REP helicase N-terminal domain CHD54_RS14395 PF12462 DNA helicase IV / RNA helicase N terminal CHD54_RS14395 PF13361 UvrD-like helicase C-terminal domain CHD54_RS14400 PF03733 Inner membrane component domain CHD54_RS14405 PF12805 FUSC-like inner membrane protein yccS CHD54_RS14410 PF04994 TfoX C-terminal domain CHD54_RS14410 PF04993 TfoX N-terminal domain CHD54_RS14415 PF03846 Cell division inhibitor SulA CHD54_RS14420 PF01389 OmpA-like transmembrane domain CHD54_RS14420 PF00691 OmpA family CHD54_RS14425 PF06303 MatP N-terminal domain CHD54_RS14425 PF17414 MatP C-terminal ribbon-helix-helix domain CHD54_RS14430 PF05362 Lon protease (S16) C-terminal proteolytic domain CHD54_RS14430 PF13654 AAA domain CHD54_RS14435 PF07977 FabA-like domain CHD54_RS14440 PF04957 Ribosome modulation factor CHD54_RS14445 PF03886 ABC-type transport auxiliary lipoprotein component CHD54_RS14450 PF02470 MlaD protein CHD54_RS14455 PF04403 Paraquat-inducible protein A CHD54_RS14460 PF12848 ABC transporter CHD54_RS14460 PF16326 ABC transporter C-terminal domain CHD54_RS14460 PF00005 ABC transporter CHD54_RS14465 PF02926 THUMP domain CHD54_RS14465 PF10672 S-adenosylmethionine-dependent methyltransferase CHD54_RS14465 PF01170 Putative RNA methylase family UPF0020 CHD54_RS14470 PF03473 MOSC domain CHD54_RS14470 PF03476 MOSC N-terminal beta barrel domain CHD54_RS14470 PF00111 2Fe-2S iron-sulfur cluster binding domain CHD54_RS14475 PF07126 Cell-division protein ZapC CHD54_RS14480 PF01180 Dihydroorotate dehydrogenase CHD54_RS14485 PF11940 Domain of unknown function (DUF3458) Ig-like fold CHD54_RS14485 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CHD54_RS14485 PF01433 Peptidase family M1 domain CHD54_RS14490 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CHD54_RS14490 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CHD54_RS14495 PF01336 OB-fold nucleic acid binding domain CHD54_RS14495 PF00152 tRNA synthetases class II (D, K and N) CHD54_RS14500 PF00267 Gram-negative porin CHD54_RS14505 PF00155 Aminotransferase class I and II CHD54_RS14510 PF00753 Metallo-beta-lactamase superfamily CHD54_RS14515 PF05951 Bacterial protein of unknown function (DUF882) CHD54_RS14520 PF01471 Putative peptidoglycan binding domain CHD54_RS14520 PF03734 L,D-transpeptidase catalytic domain CHD54_RS14525 PF04310 MukB N-terminal CHD54_RS14525 PF16330 MukB hinge domain CHD54_RS14530 PF04288 MukE-like family CHD54_RS14535 PF17193 MukF C-terminal domain CHD54_RS14535 PF03882 MukF winged-helix domain CHD54_RS14535 PF17192 MukF middle domain CHD54_RS14540 PF13847 Methyltransferase domain CHD54_RS14545 PF02698 DUF218 domain CHD54_RS14550 PF01636 Phosphotransferase enzyme family CHD54_RS14560 PF02348 Cytidylyltransferase CHD54_RS14565 PF03966 Trm112p-like protein CHD54_RS14570 PF06224 Winged helix DNA-binding domain CHD54_RS14575 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CHD54_RS14580 PF00005 ABC transporter CHD54_RS14580 PF00664 ABC transporter transmembrane region CHD54_RS14585 PF00753 Metallo-beta-lactamase superfamily CHD54_RS14585 PF03772 Competence protein CHD54_RS14590 PF00216 Bacterial DNA-binding protein CHD54_RS14595 PF00575 S1 RNA binding domain CHD54_RS14600 PF02224 Cytidylate kinase CHD54_RS14605 PF01435 Peptidase family M48 CHD54_RS14610 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CHD54_RS14615 PF00266 Aminotransferase class-V CHD54_RS14620 PF04239 Protein of unknown function (DUF421) CHD54_RS14625 PF18381 YcaO cyclodehydratase C-terminal domain CHD54_RS14625 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CHD54_RS14630 PF01226 Formate/nitrite transporter CHD54_RS14635 PF02901 Pyruvate formate lyase-like CHD54_RS14635 PF01228 Glycine radical CHD54_RS14645 PF04055 Radical SAM superfamily CHD54_RS14655 PF13520 Amino acid permease CHD54_RS14665 PF13592 Winged helix-turn helix CHD54_RS14665 PF13358 DDE superfamily endonuclease CHD54_RS14670 PF07690 Major Facilitator Superfamily CHD54_RS14675 PF00857 Isochorismatase family CHD54_RS14680 PF04976 DMSO reductase anchor subunit (DmsC) CHD54_RS14685 PF12800 4Fe-4S binding domain CHD54_RS14685 PF13247 4Fe-4S dicluster domain CHD54_RS14690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHD54_RS14690 PF01568 Molydopterin dinucleotide binding domain CHD54_RS14690 PF00384 Molybdopterin oxidoreductase CHD54_RS14695 PF02403 Seryl-tRNA synthetase N-terminal domain CHD54_RS14695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CHD54_RS14700 PF00004 ATPase family associated with various cellular activities (AAA) CHD54_RS14700 PF16193 AAA C-terminal domain CHD54_RS14700 PF12002 MgsA AAA+ ATPase C terminal CHD54_RS14705 PF03548 Outer membrane lipoprotein carrier protein LolA CHD54_RS14710 PF17854 FtsK alpha domain CHD54_RS14710 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CHD54_RS14710 PF01580 FtsK/SpoIIIE family CHD54_RS14710 PF09397 Ftsk gamma domain CHD54_RS14715 PF01037 Lrp/AsnC ligand binding domain CHD54_RS14720 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS14725 PF00664 ABC transporter transmembrane region CHD54_RS14725 PF00005 ABC transporter CHD54_RS14730 PF00664 ABC transporter transmembrane region CHD54_RS14730 PF00005 ABC transporter CHD54_RS14735 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CHD54_RS14745 PF01176 Translation initiation factor 1A / IF-1 CHD54_RS14750 PF03466 LysR substrate binding domain CHD54_RS14750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS14755 PF02678 Pirin CHD54_RS14755 PF05726 Pirin C-terminal cupin domain CHD54_RS14760 PF00857 Isochorismatase family CHD54_RS14770 PF00004 ATPase family associated with various cellular activities (AAA) CHD54_RS14770 PF17871 AAA lid domain CHD54_RS14770 PF10431 C-terminal, D2-small domain, of ClpB protein CHD54_RS14770 PF02861 Clp amino terminal domain, pathogenicity island component CHD54_RS14770 PF07724 AAA domain (Cdc48 subfamily) CHD54_RS14775 PF02617 ATP-dependent Clp protease adaptor protein ClpS CHD54_RS14780 PF00313 'Cold-shock' DNA-binding domain CHD54_RS14785 PF00005 ABC transporter CHD54_RS14785 PF02687 FtsX-like permease family CHD54_RS14785 PF12704 MacB-like periplasmic core domain CHD54_RS14790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHD54_RS14795 PF04393 Protein of unknown function (DUF535) CHD54_RS14800 PF11398 Protein of unknown function (DUF2813) CHD54_RS14805 PF03956 Lysine exporter LysO CHD54_RS14810 PF03063 Prismane/CO dehydrogenase family CHD54_RS14815 PF00175 Oxidoreductase NAD-binding domain CHD54_RS14815 PF00970 Oxidoreductase FAD-binding domain CHD54_RS14815 PF00111 2Fe-2S iron-sulfur cluster binding domain CHD54_RS14820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHD54_RS14820 PF00205 Thiamine pyrophosphate enzyme, central domain CHD54_RS14820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHD54_RS14825 PF01212 Beta-eliminating lyase CHD54_RS14830 PF13460 NAD(P)H-binding CHD54_RS14830 PF11066 Protein of unknown function (DUF2867) CHD54_RS14835 PF01370 NAD dependent epimerase/dehydratase family CHD54_RS14840 PF01510 N-acetylmuramoyl-L-alanine amidase CHD54_RS14845 PF01906 Putative heavy-metal-binding CHD54_RS14850 PF06183 DinI-like family CHD54_RS14880 PF00182 Chitinase class I CHD54_RS14905 PF12883 Protein of unknown function (DUF3828) CHD54_RS14910 PF00005 ABC transporter CHD54_RS14915 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHD54_RS14920 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS14925 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS14930 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHD54_RS14945 PF03611 PTS system sugar-specific permease component CHD54_RS14950 PF05958 tRNA (Uracil-5-)-methyltransferase CHD54_RS14955 PF10767 Protein of unknown function (DUF2593) CHD54_RS14960 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS14965 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS14970 PF00005 ABC transporter CHD54_RS14970 PF08402 TOBE domain CHD54_RS14975 PF13416 Bacterial extracellular solute-binding protein CHD54_RS14980 PF10722 Putative bacterial sensory transduction regulator CHD54_RS14985 PF08443 RimK-like ATP-grasp domain CHD54_RS14985 PF18030 RimK PreATP-grasp domain CHD54_RS14990 PF00881 Nitroreductase family CHD54_RS14995 PF07214 Protein of unknown function (DUF1418) CHD54_RS15000 PF00462 Glutaredoxin CHD54_RS15005 PF11045 Putative inner membrane protein of Enterobacteriaceae CHD54_RS15010 PF06826 Predicted Permease Membrane Region CHD54_RS15010 PF02080 TrkA-C domain CHD54_RS15015 PF00440 Bacterial regulatory proteins, tetR family CHD54_RS15020 PF07690 Major Facilitator Superfamily CHD54_RS15030 PF07690 Major Facilitator Superfamily CHD54_RS15035 PF01569 PAP2 superfamily CHD54_RS15040 PF00455 DeoR C terminal sensor domain CHD54_RS15040 PF08220 DeoR-like helix-turn-helix domain CHD54_RS15045 PF07943 Penicillin-binding protein 5, C-terminal domain CHD54_RS15045 PF00768 D-alanyl-D-alanine carboxypeptidase CHD54_RS15050 PF13417 Glutathione S-transferase, N-terminal domain CHD54_RS15050 PF00043 Glutathione S-transferase, C-terminal domain CHD54_RS15055 PF07995 Glucose / Sorbosone dehydrogenase CHD54_RS15060 PF07995 Glucose / Sorbosone dehydrogenase CHD54_RS15075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS15075 PF03466 LysR substrate binding domain CHD54_RS15090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHD54_RS15090 PF02770 Acyl-CoA dehydrogenase, middle domain CHD54_RS15090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHD54_RS15100 PF01012 Electron transfer flavoprotein domain CHD54_RS15100 PF00766 Electron transfer flavoprotein FAD-binding domain CHD54_RS15105 PF01012 Electron transfer flavoprotein domain CHD54_RS15110 PF03328 HpcH/HpaI aldolase/citrate lyase family CHD54_RS15115 PF10799 Biofilm formation protein (YliH/bssR) CHD54_RS15120 PF18693 TRAM domain CHD54_RS15120 PF00919 Uncharacterized protein family UPF0004 CHD54_RS15120 PF04055 Radical SAM superfamily CHD54_RS15125 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS15125 PF12911 N-terminal TM domain of oligopeptide transport permease C CHD54_RS15130 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS15135 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHD54_RS15140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHD54_RS15140 PF00005 ABC transporter CHD54_RS15145 PF01112 Asparaginase CHD54_RS15150 PF00994 Probable molybdopterin binding domain CHD54_RS15150 PF03454 MoeA C-terminal region (domain IV) CHD54_RS15150 PF03453 MoeA N-terminal region (domain I and II) CHD54_RS15155 PF00899 ThiF family CHD54_RS15160 PF04055 Radical SAM superfamily CHD54_RS15165 PF02901 Pyruvate formate lyase-like CHD54_RS15165 PF01228 Glycine radical CHD54_RS15175 PF07350 Protein of unknown function (DUF1479) CHD54_RS15180 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS15185 PF07690 Major Facilitator Superfamily CHD54_RS15190 PF16338 Domain of unknown function (DUF4968) CHD54_RS15190 PF01055 Glycosyl hydrolases family 31 CHD54_RS15190 PF17137 Domain of unknown function (DUF5110) CHD54_RS15190 PF13802 Galactose mutarotase-like CHD54_RS15195 PF12848 ABC transporter CHD54_RS15195 PF00005 ABC transporter CHD54_RS15200 PF17969 L,D-transpeptidase C-terminal domain CHD54_RS15200 PF03734 L,D-transpeptidase catalytic domain CHD54_RS15205 PF03600 Citrate transporter CHD54_RS15210 PF02742 Iron dependent repressor, metal binding and dimerisation domain CHD54_RS15210 PF01325 Iron dependent repressor, N-terminal DNA binding domain CHD54_RS15220 PF00884 Sulfatase CHD54_RS15225 PF13505 Outer membrane protein beta-barrel domain CHD54_RS15235 PF00892 EamA-like transporter family CHD54_RS15240 PF00210 Ferritin-like domain CHD54_RS15245 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHD54_RS15250 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS15255 PF00005 ABC transporter CHD54_RS15260 PF00924 Mechanosensitive ion channel CHD54_RS15265 PF05971 RNA methyltransferase CHD54_RS15270 PF01258 Prokaryotic dksA/traR C4-type zinc finger CHD54_RS15275 PF07338 Protein of unknown function (DUF1471) CHD54_RS15280 PF02885 Glycosyl transferase family, helical bundle domain CHD54_RS15285 PF06733 DEAD_2 CHD54_RS15285 PF13307 Helicase C-terminal domain CHD54_RS15290 PF00271 Helicase conserved C-terminal domain CHD54_RS15290 PF00270 DEAD/DEAH box helicase CHD54_RS15295 PF09209 Tetracyclin repressor-like, C-terminal domain CHD54_RS15295 PF00440 Bacterial regulatory proteins, tetR family CHD54_RS15300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHD54_RS15305 PF00005 ABC transporter CHD54_RS15320 PF11076 Putative inner membrane protein YbhQ CHD54_RS15325 PF03372 Endonuclease/Exonuclease/phosphatase family CHD54_RS15330 PF13091 PLD-like domain CHD54_RS15335 PF03706 Lysylphosphatidylglycerol synthase TM region CHD54_RS15340 PF01027 Inhibitor of apoptosis-promoting Bax1 CHD54_RS15345 PF02391 MoaE protein CHD54_RS15350 PF02597 ThiS family CHD54_RS15355 PF01967 MoaC family CHD54_RS15360 PF00994 Probable molybdopterin binding domain CHD54_RS15365 PF06463 Molybdenum Cofactor Synthesis C CHD54_RS15365 PF04055 Radical SAM superfamily CHD54_RS15370 PF01933 Uncharacterised protein family UPF0052 CHD54_RS15385 PF17757 UvrB interaction domain CHD54_RS15385 PF12344 Ultra-violet resistance protein B CHD54_RS15385 PF02151 UvrB/uvrC motif CHD54_RS15385 PF04851 Type III restriction enzyme, res subunit CHD54_RS15385 PF00271 Helicase conserved C-terminal domain CHD54_RS15395 PF08241 Methyltransferase domain CHD54_RS15400 PF00155 Aminotransferase class I and II CHD54_RS15405 PF06968 Biotin and Thiamin Synthesis associated domain CHD54_RS15405 PF04055 Radical SAM superfamily CHD54_RS15410 PF00202 Aminotransferase class-III CHD54_RS15415 PF01161 Phosphatidylethanolamine-binding protein CHD54_RS15420 PF00221 Aromatic amino acid lyase CHD54_RS15425 PF17392 Urocanase C-terminal domain CHD54_RS15425 PF17391 Urocanase N-terminal domain CHD54_RS15425 PF01175 Urocanase Rossmann-like domain CHD54_RS15430 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS15430 PF07702 UTRA domain CHD54_RS15435 PF00491 Arginase family CHD54_RS15440 PF01979 Amidohydrolase family CHD54_RS15445 PF01095 Pectinesterase CHD54_RS15450 PF07690 Major Facilitator Superfamily CHD54_RS15455 PF10282 Lactonase, 7-bladed beta-propeller CHD54_RS15465 PF03459 TOBE domain CHD54_RS15465 PF00005 ABC transporter CHD54_RS15470 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS15480 PF10766 Multidrug efflux pump-associated protein AcrZ CHD54_RS15485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS15485 PF03459 TOBE domain CHD54_RS15490 PF00005 ABC transporter CHD54_RS15495 PF16363 GDP-mannose 4,6 dehydratase CHD54_RS15500 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CHD54_RS15500 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CHD54_RS15505 PF00288 GHMP kinases N terminal domain CHD54_RS15505 PF10509 Galactokinase galactose-binding signature CHD54_RS15505 PF08544 GHMP kinases C terminal CHD54_RS15510 PF01263 Aldose 1-epimerase CHD54_RS15530 PF00108 Thiolase, N-terminal domain CHD54_RS15530 PF02803 Thiolase, C-terminal domain CHD54_RS15535 PF01144 Coenzyme A transferase CHD54_RS15540 PF00300 Histidine phosphatase superfamily (branch 1) CHD54_RS15545 PF00005 ABC transporter CHD54_RS15550 PF01032 FecCD transport family CHD54_RS15555 PF00793 DAHP synthetase I family CHD54_RS15560 PF13985 YbgS-like protein CHD54_RS15565 PF01545 Cation efflux family CHD54_RS15570 PF04973 Nicotinamide mononucleotide transporter CHD54_RS15575 PF02445 Quinolinate synthetase A protein CHD54_RS15605 PF13174 Tetratricopeptide repeat CHD54_RS15605 PF16331 TolA binding protein trimerisation CHD54_RS15610 PF00691 OmpA family CHD54_RS15615 PF07676 WD40-like Beta Propeller Repeat CHD54_RS15615 PF04052 TolB amino-terminal domain CHD54_RS15620 PF06519 TolA C-terminal CHD54_RS15625 PF02472 Biopolymer transport protein ExbD/TolR CHD54_RS15630 PF01618 MotA/TolQ/ExbB proton channel family CHD54_RS15635 PF03061 Thioesterase superfamily CHD54_RS15640 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CHD54_RS15645 PF08173 Membrane bound YbgT-like protein CHD54_RS15650 PF02322 Cytochrome bd terminal oxidase subunit II CHD54_RS15655 PF01654 Cytochrome bd terminal oxidase subunit I CHD54_RS15660 PF02629 CoA binding domain CHD54_RS15660 PF00549 CoA-ligase CHD54_RS15665 PF00549 CoA-ligase CHD54_RS15665 PF08442 ATP-grasp domain CHD54_RS15670 PF00364 Biotin-requiring enzyme CHD54_RS15670 PF02817 e3 binding domain CHD54_RS15670 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CHD54_RS15675 PF16870 2-oxoglutarate dehydrogenase C-terminal CHD54_RS15675 PF00676 Dehydrogenase E1 component CHD54_RS15675 PF16078 2-oxoglutarate dehydrogenase N-terminus CHD54_RS15675 PF02779 Transketolase, pyrimidine binding domain CHD54_RS15680 PF13085 2Fe-2S iron-sulfur cluster binding domain CHD54_RS15685 PF02910 Fumarate reductase flavoprotein C-term CHD54_RS15685 PF00890 FAD binding domain CHD54_RS15690 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CHD54_RS15695 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CHD54_RS15700 PF00285 Citrate synthase, C-terminal domain CHD54_RS15705 PF05145 Transition state regulatory protein AbrB CHD54_RS15710 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CHD54_RS15710 PF06827 Zinc finger found in FPG and IleRS CHD54_RS15710 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CHD54_RS15760 PF03275 UDP-galactopyranose mutase CHD54_RS15775 PF00589 Phage integrase family CHD54_RS15785 PF03746 LamB/YcsF family CHD54_RS15790 PF02626 Carboxyltransferase domain, subdomain A and B CHD54_RS15795 PF02682 Carboxyltransferase domain, subdomain C and D CHD54_RS15800 PF01784 NIF3 (NGG1p interacting factor 3) CHD54_RS15805 PF00854 POT family CHD54_RS15810 PF03441 FAD binding domain of DNA photolyase CHD54_RS15810 PF00875 DNA photolyase CHD54_RS15835 PF05638 Type VI secretion system effector, Hcp CHD54_RS15840 PF10725 Protein of unknown function (DUF2517) CHD54_RS15845 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) CHD54_RS15850 PF03814 Potassium-transporting ATPase A subunit CHD54_RS15860 PF02669 K+-transporting ATPase, c chain CHD54_RS15865 PF13492 GAF domain CHD54_RS15865 PF02702 Osmosensitive K+ channel His kinase sensor domain CHD54_RS15865 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS15865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS15865 PF13493 Domain of unknown function (DUF4118) CHD54_RS15870 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS15870 PF00072 Response regulator receiver domain CHD54_RS15875 PF10940 Protein of unknown function (DUF2618) CHD54_RS15880 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CHD54_RS15880 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CHD54_RS15880 PF01276 Orn/Lys/Arg decarboxylase, major domain CHD54_RS15885 PF13520 Amino acid permease CHD54_RS15895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHD54_RS15895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CHD54_RS15895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CHD54_RS15895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CHD54_RS15900 PF03925 SeqA protein C-terminal domain CHD54_RS15900 PF17206 SeqA protein N-terminal domain CHD54_RS15905 PF12697 Alpha/beta hydrolase family CHD54_RS15910 PF01402 Ribbon-helix-helix protein, copG family CHD54_RS15915 PF00258 Flavodoxin CHD54_RS15920 PF01475 Ferric uptake regulator family CHD54_RS15925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS15925 PF03466 LysR substrate binding domain CHD54_RS15930 PF00890 FAD binding domain CHD54_RS15930 PF14537 Cytochrome c3 CHD54_RS15940 PF07690 Major Facilitator Superfamily CHD54_RS15945 PF13982 YbfN-like lipoprotein CHD54_RS15950 PF03573 outer membrane porin, OprD family CHD54_RS15955 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHD54_RS15955 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CHD54_RS15960 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CHD54_RS15960 PF00367 phosphotransferase system, EIIB CHD54_RS15960 PF02378 Phosphotransferase system, EIIC CHD54_RS15965 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CHD54_RS15970 PF01979 Amidohydrolase family CHD54_RS15975 PF00480 ROK family CHD54_RS15975 PF01047 MarR family CHD54_RS15980 PF13344 Haloacid dehalogenase-like hydrolase CHD54_RS15985 PF00733 Asparagine synthase CHD54_RS15985 PF13537 Glutamine amidotransferase domain CHD54_RS16030 PF01494 FAD binding domain CHD54_RS16035 PF04055 Radical SAM superfamily CHD54_RS16035 PF01938 TRAM domain CHD54_RS16035 PF00919 Uncharacterized protein family UPF0004 CHD54_RS16040 PF02562 PhoH-like protein CHD54_RS16045 PF02130 Uncharacterized protein family UPF0054 CHD54_RS16050 PF00571 CBS domain CHD54_RS16050 PF03471 Transporter associated domain CHD54_RS16055 PF00795 Carbon-nitrogen hydrolase CHD54_RS16060 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHD54_RS16065 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS16070 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS16075 PF00005 ABC transporter CHD54_RS16080 PF01156 Inosine-uridine preferring nucleoside hydrolase CHD54_RS16085 PF07295 Zinc-ribbon containing domain CHD54_RS16090 PF08264 Anticodon-binding domain of tRNA CHD54_RS16090 PF00133 tRNA synthetases class I (I, L, M and V) CHD54_RS16090 PF13603 Leucyl-tRNA synthetase, Domain 2 CHD54_RS16095 PF04390 Lipopolysaccharide-assembly CHD54_RS16100 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CHD54_RS16100 PF06144 DNA polymerase III, delta subunit CHD54_RS16105 PF01467 Cytidylyltransferase-like CHD54_RS16120 PF02590 Predicted SPOUT methyltransferase CHD54_RS16125 PF03717 Penicillin-binding Protein dimerisation domain CHD54_RS16125 PF00905 Penicillin binding protein transpeptidase domain CHD54_RS16130 PF01098 Cell cycle protein CHD54_RS16135 PF05036 Sporulation related domain CHD54_RS16135 PF03330 Lytic transglycolase CHD54_RS16140 PF00768 D-alanyl-D-alanine carboxypeptidase CHD54_RS16140 PF07943 Penicillin-binding protein 5, C-terminal domain CHD54_RS16145 PF04359 Protein of unknown function (DUF493) CHD54_RS16150 PF03099 Biotin/lipoate A/B protein ligase family CHD54_RS16155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS16155 PF03466 LysR substrate binding domain CHD54_RS16160 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CHD54_RS16160 PF04055 Radical SAM superfamily CHD54_RS16165 PF02416 mttA/Hcf106 family CHD54_RS16170 PF00795 Carbon-nitrogen hydrolase CHD54_RS16175 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CHD54_RS16180 PF00313 'Cold-shock' DNA-binding domain CHD54_RS16185 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CHD54_RS16190 PF03606 C4-dicarboxylate anaerobic carrier CHD54_RS16195 PF12431 Transcriptional regulator CHD54_RS16195 PF00072 Response regulator receiver domain CHD54_RS16200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS16200 PF00989 PAS fold CHD54_RS16200 PF17203 Single cache domain 3 CHD54_RS16200 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CHD54_RS16205 PF08218 Citrate lyase ligase C-terminal domain CHD54_RS16210 PF06857 Malonate decarboxylase delta subunit (MdcD) CHD54_RS16215 PF03328 HpcH/HpaI aldolase/citrate lyase family CHD54_RS16220 PF04223 Citrate lyase, alpha subunit (CitF) CHD54_RS16225 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CHD54_RS16230 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CHD54_RS16235 PF00939 Sodium:sulfate symporter transmembrane region CHD54_RS16240 PF00445 Ribonuclease T2 family CHD54_RS16245 PF01272 Transcription elongation factor, GreA/GreB, C-term CHD54_RS16245 PF14760 Rnk N-terminus CHD54_RS16250 PF13823 Alcohol dehydrogenase GroES-associated CHD54_RS16250 PF00107 Zinc-binding dehydrogenase CHD54_RS16250 PF08240 Alcohol dehydrogenase GroES-like domain CHD54_RS16255 PF00582 Universal stress protein family CHD54_RS16260 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS16260 PF13192 Thioredoxin domain CHD54_RS16265 PF00578 AhpC/TSA family CHD54_RS16265 PF10417 C-terminal domain of 1-Cys peroxiredoxin CHD54_RS16270 PF13098 Thioredoxin-like domain CHD54_RS16280 PF11922 Domain of unknown function (DUF3440) CHD54_RS16280 PF01507 Phosphoadenosine phosphosulfate reductase family CHD54_RS16285 PF02195 ParB-like nuclease domain CHD54_RS16290 PF00155 Aminotransferase class I and II CHD54_RS16295 PF00465 Iron-containing alcohol dehydrogenase CHD54_RS16300 PF04328 Selenoprotein, putative CHD54_RS16305 PF13722 5TM C-terminal transporter carbon starvation CstA CHD54_RS16305 PF02554 Carbon starvation protein CstA CHD54_RS16310 PF03061 Thioesterase superfamily CHD54_RS16320 PF00857 Isochorismatase family CHD54_RS16320 PF00550 Phosphopantetheine attachment site CHD54_RS16325 PF13193 AMP-binding enzyme C-terminal domain CHD54_RS16325 PF00501 AMP-binding enzyme CHD54_RS16330 PF00425 chorismate binding enzyme CHD54_RS16335 PF01497 Periplasmic binding protein CHD54_RS16340 PF05977 Transmembrane secretion effector CHD54_RS16345 PF01032 FecCD transport family CHD54_RS16350 PF01032 FecCD transport family CHD54_RS16355 PF00005 ABC transporter CHD54_RS16360 PF02706 Chain length determinant protein CHD54_RS16365 PF13193 AMP-binding enzyme C-terminal domain CHD54_RS16365 PF00668 Condensation domain CHD54_RS16365 PF00501 AMP-binding enzyme CHD54_RS16365 PF00550 Phosphopantetheine attachment site CHD54_RS16365 PF00975 Thioesterase domain CHD54_RS16370 PF03621 MbtH-like protein CHD54_RS16375 PF00756 Putative esterase CHD54_RS16375 PF11806 Domain of unknown function (DUF3327) CHD54_RS16380 PF07715 TonB-dependent Receptor Plug Domain CHD54_RS16380 PF00593 TonB dependent receptor CHD54_RS16385 PF01648 4'-phosphopantetheinyl transferase superfamily CHD54_RS16385 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CHD54_RS16390 PF04107 Glutamate-cysteine ligase family 2(GCS2) CHD54_RS16395 PF06643 Protein of unknown function (DUF1158) CHD54_RS16400 PF12833 Helix-turn-helix domain CHD54_RS16405 PF16295 Tetracyclin repressor-like, C-terminal domain CHD54_RS16405 PF00440 Bacterial regulatory proteins, tetR family CHD54_RS16410 PF04237 YjbR CHD54_RS16415 PF00881 Nitroreductase family CHD54_RS16425 PF03830 PTS system sorbose subfamily IIB component CHD54_RS16435 PF03613 PTS system mannose/fructose/sorbose family IID component CHD54_RS16445 PF01380 SIS domain CHD54_RS16450 PF03610 PTS system fructose IIA component CHD54_RS16450 PF00874 PRD domain CHD54_RS16450 PF00158 Sigma-54 interaction domain CHD54_RS16455 PF03797 Autotransporter beta-domain CHD54_RS16455 PF00657 GDSL-like Lipase/Acylhydrolase CHD54_RS16465 PF00924 Mechanosensitive ion channel CHD54_RS16470 PF00324 Amino acid permease CHD54_RS16480 PF04224 Protein of unknown function, DUF417 CHD54_RS16485 PF07338 Protein of unknown function (DUF1471) CHD54_RS16490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHD54_RS16490 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS16495 PF12852 Cupin CHD54_RS16495 PF12833 Helix-turn-helix domain CHD54_RS16520 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CHD54_RS16520 PF09092 Lyase, N terminal CHD54_RS16520 PF09093 Lyase, catalytic CHD54_RS16520 PF02278 Polysaccharide lyase family 8, super-sandwich domain CHD54_RS16615 PF00589 Phage integrase family CHD54_RS16625 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS16640 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS16640 PF00072 Response regulator receiver domain CHD54_RS16645 PF00419 Fimbrial protein CHD54_RS16650 PF00419 Fimbrial protein CHD54_RS16655 PF13953 PapC C-terminal domain CHD54_RS16655 PF00577 Outer membrane usher protein CHD54_RS16655 PF13954 PapC N-terminal domain CHD54_RS16660 PF02753 Pili assembly chaperone PapD, C-terminal domain CHD54_RS16660 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CHD54_RS16670 PF00419 Fimbrial protein CHD54_RS16675 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CHD54_RS16675 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CHD54_RS16685 PF01406 tRNA synthetases class I (C) catalytic domain CHD54_RS16685 PF09190 DALR domain CHD54_RS16690 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CHD54_RS16695 PF12850 Calcineurin-like phosphoesterase superfamily domain CHD54_RS16700 PF00731 AIR carboxylase CHD54_RS16705 PF02222 ATP-grasp domain CHD54_RS16705 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CHD54_RS16730 PF05638 Type VI secretion system effector, Hcp CHD54_RS16745 PF00005 ABC transporter CHD54_RS16750 PF13472 GDSL-like Lipase/Acylhydrolase family CHD54_RS16755 PF00106 short chain dehydrogenase CHD54_RS16760 PF00085 Thioredoxin CHD54_RS16765 PF03649 Uncharacterised protein family (UPF0014) CHD54_RS16770 PF00005 ABC transporter CHD54_RS16775 PF01145 SPFH domain / Band 7 family CHD54_RS16775 PF16200 C-terminal region of band_7 CHD54_RS16780 PF01957 NfeD-like C-terminal, partner-binding CHD54_RS16785 PF13411 MerR HTH family regulatory protein CHD54_RS16790 PF00403 Heavy-metal-associated domain CHD54_RS16795 PF01963 TraB family CHD54_RS16800 PF04073 Aminoacyl-tRNA editing domain CHD54_RS16805 PF02872 5'-nucleotidase, C-terminal domain CHD54_RS16805 PF00149 Calcineurin-like phosphoesterase CHD54_RS16810 PF07690 Major Facilitator Superfamily CHD54_RS16815 PF00999 Sodium/hydrogen exchanger family CHD54_RS16815 PF02254 TrkA-N domain CHD54_RS16825 PF00294 pfkB family carbohydrate kinase CHD54_RS16830 PF07859 alpha/beta hydrolase fold CHD54_RS16835 PF00762 Ferrochelatase CHD54_RS16840 PF05191 Adenylate kinase, active site lid CHD54_RS16845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS16845 PF00183 Hsp90 protein CHD54_RS16850 PF13662 Toprim domain CHD54_RS16850 PF02132 RecR protein CHD54_RS16855 PF02575 YbaB/EbfC DNA-binding family CHD54_RS16860 PF12169 DNA polymerase III subunits gamma and tau domain III CHD54_RS16860 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CHD54_RS16860 PF12170 DNA polymerase III tau subunit V interacting with alpha CHD54_RS16865 PF00156 Phosphoribosyl transferase domain CHD54_RS16870 PF04304 Protein of unknown function (DUF454) CHD54_RS16875 PF07445 Primosomal replication protein priC CHD54_RS16880 PF10689 Protein of unknown function (DUF2496) CHD54_RS16890 PF12794 Mechanosensitive ion channel inner membrane domain 1 CHD54_RS16890 PF00924 Mechanosensitive ion channel CHD54_RS16890 PF12795 Mechanosensitive ion channel porin domain CHD54_RS16895 PF00440 Bacterial regulatory proteins, tetR family CHD54_RS16895 PF08361 MAATS-type transcriptional repressor, C-terminal region CHD54_RS16900 PF00529 HlyD membrane-fusion protein of T1SS CHD54_RS16900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHD54_RS16905 PF00873 AcrB/AcrD/AcrF family CHD54_RS16910 PF10757 Biofilm formation regulator YbaJ CHD54_RS16915 PF05321 Haemolysin expression modulating protein CHD54_RS16920 PF14602 Hexapeptide repeat of succinyl-transferase CHD54_RS16920 PF12464 Maltose acetyltransferase CHD54_RS16925 PF10777 Inner membrane protein YlaC CHD54_RS16930 PF00444 Ribosomal protein L36 CHD54_RS16935 PF01197 Ribosomal protein L31 CHD54_RS16940 PF12792 CSS motif domain associated with EAL CHD54_RS16940 PF00563 EAL domain CHD54_RS16950 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CHD54_RS16955 PF09619 Type III secretion system lipoprotein chaperone (YscW) CHD54_RS16965 PF00909 Ammonium Transporter Family CHD54_RS16970 PF00543 Nitrogen regulatory protein P-II CHD54_RS16975 PF00005 ABC transporter CHD54_RS16975 PF00664 ABC transporter transmembrane region CHD54_RS16980 PF00005 ABC transporter CHD54_RS16980 PF00664 ABC transporter transmembrane region CHD54_RS16985 PF01037 Lrp/AsnC ligand binding domain CHD54_RS16985 PF13404 AsnC-type helix-turn-helix domain CHD54_RS17000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHD54_RS17000 PF12793 Sugar transport-related sRNA regulator N-term CHD54_RS17005 PF06508 Queuosine biosynthesis protein QueC CHD54_RS17020 PF13145 PPIC-type PPIASE domain CHD54_RS17025 PF00216 Bacterial DNA-binding protein CHD54_RS17030 PF00004 ATPase family associated with various cellular activities (AAA) CHD54_RS17030 PF02190 ATP-dependent protease La (LON) substrate-binding domain CHD54_RS17030 PF05362 Lon protease (S16) C-terminal proteolytic domain CHD54_RS17035 PF06689 ClpX C4-type zinc finger CHD54_RS17035 PF10431 C-terminal, D2-small domain, of ClpB protein CHD54_RS17035 PF07724 AAA domain (Cdc48 subfamily) CHD54_RS17040 PF00574 Clp protease CHD54_RS17045 PF05697 Bacterial trigger factor protein (TF) CHD54_RS17045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHD54_RS17045 PF05698 Bacterial trigger factor protein (TF) C-terminus CHD54_RS17055 PF01722 BolA-like protein CHD54_RS17060 PF03923 Uncharacterized lipoprotein CHD54_RS17060 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CHD54_RS17065 PF07690 Major Facilitator Superfamily CHD54_RS17070 PF06481 COX Aromatic Rich Motif CHD54_RS17070 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CHD54_RS17075 PF00115 Cytochrome C and Quinol oxidase polypeptide I CHD54_RS17080 PF00510 Cytochrome c oxidase subunit III CHD54_RS17085 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CHD54_RS17090 PF01040 UbiA prenyltransferase family CHD54_RS17100 PF07690 Major Facilitator Superfamily CHD54_RS17105 PF04461 Protein of unknown function (DUF520) CHD54_RS17110 PF02558 Ketopantoate reductase PanE/ApbA CHD54_RS17110 PF08546 Ketopantoate reductase PanE/ApbA C terminal CHD54_RS17115 PF01965 DJ-1/PfpI family CHD54_RS17120 PF02926 THUMP domain CHD54_RS17120 PF02568 Thiamine biosynthesis protein (ThiI) CHD54_RS17125 PF02609 Exonuclease VII small subunit CHD54_RS17130 PF00348 Polyprenyl synthetase CHD54_RS17135 PF02779 Transketolase, pyrimidine binding domain CHD54_RS17135 PF02780 Transketolase, C-terminal domain CHD54_RS17135 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CHD54_RS17140 PF00248 Aldo/keto reductase family CHD54_RS17145 PF04608 Phosphatidylglycerophosphatase A CHD54_RS17150 PF00586 AIR synthase related protein, N-terminal domain CHD54_RS17150 PF02769 AIR synthase related protein, C-terminal domain CHD54_RS17155 PF01029 NusB family CHD54_RS17160 PF00885 6,7-dimethyl-8-ribityllumazine synthase CHD54_RS17165 PF01872 RibD C-terminal domain CHD54_RS17165 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CHD54_RS17170 PF03477 ATP cone domain CHD54_RS17175 PF11622 Protein of unknown function (DUF3251) CHD54_RS17180 PF03502 Nucleoside-specific channel-forming protein, Tsx CHD54_RS17185 PF01844 HNH endonuclease CHD54_RS17190 PF02355 Protein export membrane protein CHD54_RS17190 PF07549 SecD/SecF GG Motif CHD54_RS17195 PF07549 SecD/SecF GG Motif CHD54_RS17195 PF02355 Protein export membrane protein CHD54_RS17195 PF13721 SecD export protein N-terminal TM region CHD54_RS17200 PF02699 Preprotein translocase subunit CHD54_RS17205 PF01702 Queuine tRNA-ribosyltransferase CHD54_RS17210 PF02547 Queuosine biosynthesis protein CHD54_RS17215 PF04336 Acyl carrier protein phosphodiesterase CHD54_RS17220 PF10417 C-terminal domain of 1-Cys peroxiredoxin CHD54_RS17220 PF00578 AhpC/TSA family CHD54_RS17230 PF00128 Alpha amylase, catalytic domain CHD54_RS17230 PF02903 Alpha amylase, N-terminal ig-like domain CHD54_RS17235 PF00324 Amino acid permease CHD54_RS17240 PF05525 Branched-chain amino acid transport protein CHD54_RS17245 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS17245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS17245 PF11808 Phosphate regulon sensor protein PhoR CHD54_RS17245 PF00989 PAS fold CHD54_RS17250 PF00072 Response regulator receiver domain CHD54_RS17250 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS17255 PF12320 Type 5 capsule protein repressor C-terminal domain CHD54_RS17255 PF00149 Calcineurin-like phosphoesterase CHD54_RS17260 PF13476 AAA domain CHD54_RS17265 PF07690 Major Facilitator Superfamily CHD54_RS17270 PF00480 ROK family CHD54_RS17275 PF04381 Putative exonuclease, RdgC CHD54_RS17280 PF06865 Pyrimidine/purine nucleoside phosphorylase CHD54_RS17285 PF07302 AroM protein CHD54_RS17290 PF16362 YaiA protein CHD54_RS17295 PF01202 Shikimate kinase CHD54_RS17300 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CHD54_RS17305 PF03807 NADP oxidoreductase coenzyme F420-dependent CHD54_RS17305 PF14748 Pyrroline-5-carboxylate reductase dimerisation CHD54_RS17310 PF05230 MASE2 domain CHD54_RS17310 PF00990 Diguanylate cyclase, GGDEF domain CHD54_RS17315 PF07769 psiF repeat CHD54_RS17320 PF10796 Sigma-S stabilisation anti-adaptor protein CHD54_RS17325 PF07690 Major Facilitator Superfamily CHD54_RS17335 PF01820 D-ala D-ala ligase N-terminus CHD54_RS17335 PF07478 D-ala D-ala ligase C-terminus CHD54_RS17340 PF10953 Protein of unknown function (DUF2754) CHD54_RS17345 PF10954 Protein of unknown function (DUF2755) CHD54_RS17350 PF07759 Protein of unknown function (DUF1615) CHD54_RS17355 PF05992 SbmA/BacA-like family CHD54_RS17365 PF00144 Beta-lactamase CHD54_RS17370 PF15977 Winged helix-turn-helix DNA binding CHD54_RS17375 PF03797 Autotransporter beta-domain CHD54_RS17380 PF00490 Delta-aminolevulinic acid dehydratase CHD54_RS17385 PF13193 AMP-binding enzyme C-terminal domain CHD54_RS17385 PF00501 AMP-binding enzyme CHD54_RS17385 PF16177 Acetyl-coenzyme A synthetase N-terminus CHD54_RS17390 PF03972 MmgE/PrpD family CHD54_RS17395 PF00285 Citrate synthase, C-terminal domain CHD54_RS17405 PF02954 Bacterial regulatory protein, Fis family CHD54_RS17405 PF06506 Propionate catabolism activator CHD54_RS17405 PF00158 Sigma-54 interaction domain CHD54_RS17410 PF07338 Protein of unknown function (DUF1471) CHD54_RS17415 PF01810 LysE type translocator CHD54_RS17420 PF07715 TonB-dependent Receptor Plug Domain CHD54_RS17420 PF00593 TonB dependent receptor CHD54_RS17430 PF02322 Cytochrome bd terminal oxidase subunit II CHD54_RS17435 PF01654 Cytochrome bd terminal oxidase subunit I CHD54_RS17445 PF08774 VRR-NUC domain CHD54_RS17445 PF04851 Type III restriction enzyme, res subunit CHD54_RS17450 PF18273 Type III R-M EcoP15I C-terminal domain CHD54_RS17450 PF01555 DNA methylase CHD54_RS17455 PF07690 Major Facilitator Superfamily CHD54_RS17465 PF09278 MerR, DNA binding CHD54_RS17465 PF00376 MerR family regulatory protein CHD54_RS17480 PF01979 Amidohydrolase family CHD54_RS17495 PF00589 Phage integrase family CHD54_RS17505 PF00171 Aldehyde dehydrogenase family CHD54_RS17510 PF01472 PUA domain CHD54_RS17510 PF00696 Amino acid kinase family CHD54_RS17515 PF00267 Gram-negative porin CHD54_RS17520 PF07417 Sigma factor-binding transcriptional regulator Crl CHD54_RS17525 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) CHD54_RS17530 PF00156 Phosphoribosyl transferase domain CHD54_RS17535 PF07687 Peptidase dimerisation domain CHD54_RS17535 PF01546 Peptidase family M20/M25/M40 CHD54_RS17540 PF00817 impB/mucB/samB family CHD54_RS17540 PF11798 IMS family HHH motif CHD54_RS17540 PF11799 impB/mucB/samB family C-terminal domain CHD54_RS17545 PF03734 L,D-transpeptidase catalytic domain CHD54_RS17550 PF13230 Glutamine amidotransferases class-II CHD54_RS17555 PF13580 SIS domain CHD54_RS17560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHD54_RS17560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHD54_RS17560 PF02770 Acyl-CoA dehydrogenase, middle domain CHD54_RS17560 PF09317 Domain of unknown function (DUF1974) CHD54_RS17565 PF00795 Carbon-nitrogen hydrolase CHD54_RS17580 PF13505 Outer membrane protein beta-barrel domain CHD54_RS17590 PF00929 Exonuclease CHD54_RS17595 PF00075 RNase H CHD54_RS17600 PF08241 Methyltransferase domain CHD54_RS17605 PF00753 Metallo-beta-lactamase superfamily CHD54_RS17605 PF16123 Hydroxyacylglutathione hydrolase C-terminus CHD54_RS17610 PF01476 LysM domain CHD54_RS17610 PF01464 Transglycosylase SLT domain CHD54_RS17620 PF03372 Endonuclease/Exonuclease/phosphatase family CHD54_RS17625 PF03466 LysR substrate binding domain CHD54_RS17625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS17630 PF13592 Winged helix-turn helix CHD54_RS17630 PF13358 DDE superfamily endonuclease CHD54_RS17675 PF04717 Type VI secretion system, phage-baseplate injector CHD54_RS17680 PF05638 Type VI secretion system effector, Hcp CHD54_RS17690 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CHD54_RS17700 PF05947 Type VI secretion system, TssF CHD54_RS17720 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CHD54_RS17730 PF10431 C-terminal, D2-small domain, of ClpB protein CHD54_RS17730 PF17871 AAA lid domain CHD54_RS17730 PF00004 ATPase family associated with various cellular activities (AAA) CHD54_RS17730 PF07724 AAA domain (Cdc48 subfamily) CHD54_RS17745 PF06761 Intracellular multiplication and human macrophage-killing CHD54_RS17745 PF06744 Type VI secretion protein IcmF C-terminal CHD54_RS17745 PF14331 ImcF-related N-terminal domain CHD54_RS17755 PF05638 Type VI secretion system effector, Hcp CHD54_RS17760 PF10135 Rod binding protein CHD54_RS17760 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CHD54_RS17780 PF00589 Phage integrase family CHD54_RS17780 PF13356 Arm DNA-binding domain CHD54_RS17820 PF09383 NIL domain CHD54_RS17820 PF00005 ABC transporter CHD54_RS17825 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS17830 PF03180 NLPA lipoprotein CHD54_RS17835 PF16358 RcsF lipoprotein CHD54_RS17840 PF01980 tRNA-methyltransferase O CHD54_RS17840 PF18389 TrmO C-terminal domain CHD54_RS17845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CHD54_RS17845 PF03129 Anticodon binding domain CHD54_RS17845 PF04073 Aminoacyl-tRNA editing domain CHD54_RS17850 PF17185 NlpE C-terminal OB domain CHD54_RS17850 PF04170 NlpE N-terminal domain CHD54_RS17855 PF00472 RF-1 domain CHD54_RS17860 PF07152 YaeQ protein CHD54_RS17865 PF06786 Uncharacterised protein family (UPF0253) CHD54_RS17870 PF07073 Modulator of Rho-dependent transcription termination (ROF) CHD54_RS17875 PF01171 PP-loop family CHD54_RS17875 PF09179 TilS substrate binding domain CHD54_RS17875 PF11734 TilS substrate C-terminal domain CHD54_RS17880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CHD54_RS17885 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CHD54_RS17885 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CHD54_RS17885 PF01276 Orn/Lys/Arg decarboxylase, major domain CHD54_RS17895 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CHD54_RS17900 PF01336 OB-fold nucleic acid binding domain CHD54_RS17900 PF02811 PHP domain CHD54_RS17900 PF14579 Helix-hairpin-helix motif CHD54_RS17900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CHD54_RS17900 PF07733 Bacterial DNA polymerase III alpha NTPase domain CHD54_RS17905 PF01351 Ribonuclease HII CHD54_RS17910 PF02684 Lipid-A-disaccharide synthetase CHD54_RS17915 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CHD54_RS17915 PF00132 Bacterial transferase hexapeptide (six repeats) CHD54_RS17920 PF07977 FabA-like domain CHD54_RS17925 PF00132 Bacterial transferase hexapeptide (six repeats) CHD54_RS17925 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CHD54_RS17930 PF03938 Outer membrane protein (OmpH-like) CHD54_RS17935 PF07244 Surface antigen variable number repeat CHD54_RS17935 PF01103 Surface antigen CHD54_RS17940 PF02163 Peptidase family M50 CHD54_RS17940 PF17820 PDZ domain CHD54_RS17950 PF01255 Putative undecaprenyl diphosphate synthase CHD54_RS17955 PF13288 DXP reductoisomerase C-terminal domain CHD54_RS17955 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CHD54_RS17955 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CHD54_RS17960 PF01765 Ribosome recycling factor CHD54_RS17965 PF00696 Amino acid kinase family CHD54_RS17970 PF00889 Elongation factor TS CHD54_RS17975 PF00318 Ribosomal protein S2 CHD54_RS17980 PF00557 Metallopeptidase family M24 CHD54_RS17985 PF01842 ACT domain CHD54_RS17985 PF08335 GlnD PII-uridylyltransferase CHD54_RS17985 PF01966 HD domain CHD54_RS17985 PF01909 Nucleotidyltransferase domain CHD54_RS17990 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CHD54_RS17990 PF14602 Hexapeptide repeat of succinyl-transferase CHD54_RS17990 PF00132 Bacterial transferase hexapeptide (six repeats) CHD54_RS17995 PF07690 Major Facilitator Superfamily CHD54_RS17995 PF00083 Sugar (and other) transporter CHD54_RS18000 PF11944 Protein of unknown function (DUF3461) CHD54_RS18010 PF00595 PDZ domain CHD54_RS18015 PF01966 HD domain CHD54_RS18015 PF13286 Phosphohydrolase-associated domain CHD54_RS18020 PF01048 Phosphorylase superfamily CHD54_RS18025 PF01497 Periplasmic binding protein CHD54_RS18030 PF03458 UPF0126 domain CHD54_RS18035 PF01521 Iron-sulphur cluster biosynthesis CHD54_RS18040 PF00654 Voltage gated chloride channel CHD54_RS18045 PF00202 Aminotransferase class-III CHD54_RS18050 PF01032 FecCD transport family CHD54_RS18055 PF01497 Periplasmic binding protein CHD54_RS18060 PF00005 ABC transporter CHD54_RS18065 PF07715 TonB-dependent Receptor Plug Domain CHD54_RS18065 PF00593 TonB dependent receptor CHD54_RS18070 PF00912 Transglycosylase CHD54_RS18070 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CHD54_RS18070 PF14814 Bifunctional transglycosylase second domain CHD54_RS18070 PF00905 Penicillin binding protein transpeptidase domain CHD54_RS18075 PF04408 Helicase associated domain (HA2) CHD54_RS18075 PF00270 DEAD/DEAH box helicase CHD54_RS18075 PF00271 Helicase conserved C-terminal domain CHD54_RS18075 PF08482 ATP-dependent helicase C-terminal CHD54_RS18080 PF02834 LigT like Phosphoesterase CHD54_RS18085 PF17746 SfsA N-terminal OB domain CHD54_RS18085 PF03749 Sugar fermentation stimulation protein RE domain CHD54_RS18090 PF01258 Prokaryotic dksA/traR C4-type zinc finger CHD54_RS18095 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHD54_RS18100 PF01743 Poly A polymerase head domain CHD54_RS18100 PF12627 Probable RNA and SrmB- binding site of polymerase A CHD54_RS18100 PF12626 Polymerase A arginine-rich C-terminus CHD54_RS18105 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CHD54_RS18110 PF02548 Ketopantoate hydroxymethyltransferase CHD54_RS18115 PF02569 Pantoate-beta-alanine ligase CHD54_RS18125 PF02261 Aspartate decarboxylase CHD54_RS18130 PF01522 Polysaccharide deacetylase CHD54_RS18135 PF03610 PTS system fructose IIA component CHD54_RS18140 PF01061 ABC-2 type transporter CHD54_RS18145 PF00005 ABC transporter CHD54_RS18150 PF00484 Carbonic anhydrase CHD54_RS18155 PF00156 Phosphoribosyl transferase domain CHD54_RS18160 PF01011 PQQ enzyme repeat CHD54_RS18165 PF07732 Multicopper oxidase CHD54_RS18165 PF00394 Multicopper oxidase CHD54_RS18165 PF07731 Multicopper oxidase CHD54_RS18170 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CHD54_RS18175 PF17284 Spermidine synthase tetramerisation domain CHD54_RS18180 PF02675 S-adenosylmethionine decarboxylase CHD54_RS18185 PF00455 DeoR C terminal sensor domain CHD54_RS18185 PF08220 DeoR-like helix-turn-helix domain CHD54_RS18190 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CHD54_RS18195 PF07005 Sugar-binding N-terminal domain CHD54_RS18195 PF17042 Nucleotide-binding C-terminal domain CHD54_RS18200 PF03812 2-keto-3-deoxygluconate permease CHD54_RS18205 PF06062 Uncharacterised protein family (UPF0231) CHD54_RS18210 PF00330 Aconitase family (aconitate hydratase) CHD54_RS18210 PF11791 Aconitate B N-terminal domain CHD54_RS18210 PF06434 Aconitate hydratase 2 N-terminus CHD54_RS18215 PF11737 Protein of unknown function (DUF3300) CHD54_RS18230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHD54_RS18230 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS18235 PF02817 e3 binding domain CHD54_RS18235 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CHD54_RS18235 PF00364 Biotin-requiring enzyme CHD54_RS18240 PF00456 Transketolase, thiamine diphosphate binding domain CHD54_RS18240 PF17831 Pyruvate dehydrogenase E1 component middle domain CHD54_RS18245 PF07729 FCD domain CHD54_RS18245 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS18260 PF00324 Amino acid permease CHD54_RS18270 PF04616 Glycosyl hydrolases family 43 CHD54_RS18270 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain CHD54_RS18275 PF17113 Regulatory signalling modulator protein AmpE CHD54_RS18280 PF01510 N-acetylmuramoyl-L-alanine amidase CHD54_RS18285 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CHD54_RS18285 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CHD54_RS18295 PF07963 Prokaryotic N-terminal methylation motif CHD54_RS18300 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CHD54_RS18300 PF00437 Type II/IV secretion system protein CHD54_RS18305 PF00482 Type II secretion system (T2SS), protein F CHD54_RS18310 PF00478 IMP dehydrogenase / GMP reductase domain CHD54_RS18315 PF01121 Dephospho-CoA kinase CHD54_RS18320 PF07072 Cell division protein CHD54_RS18325 PF03884 DNA gyrase inhibitor YacG CHD54_RS18335 PF00248 Aldo/keto reductase family CHD54_RS18340 PF00293 NUDIX domain CHD54_RS18345 PF02810 SEC-C motif CHD54_RS18345 PF01043 SecA preprotein cross-linking domain CHD54_RS18345 PF07516 SecA Wing and Scaffold domain CHD54_RS18345 PF07517 SecA DEAD-like domain CHD54_RS18350 PF06558 Secretion monitor precursor protein (SecM) CHD54_RS18360 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CHD54_RS18365 PF12327 FtsZ family, C-terminal domain CHD54_RS18365 PF00091 Tubulin/FtsZ family, GTPase domain CHD54_RS18370 PF02491 SHS2 domain inserted in FTSA CHD54_RS18375 PF03799 Cell division protein FtsQ CHD54_RS18375 PF08478 POTRA domain, FtsQ-type CHD54_RS18380 PF07478 D-ala D-ala ligase C-terminus CHD54_RS18380 PF01820 D-ala D-ala ligase N-terminus CHD54_RS18385 PF02875 Mur ligase family, glutamate ligase domain CHD54_RS18385 PF01225 Mur ligase family, catalytic domain CHD54_RS18385 PF08245 Mur ligase middle domain CHD54_RS18390 PF04101 Glycosyltransferase family 28 C-terminal domain CHD54_RS18390 PF03033 Glycosyltransferase family 28 N-terminal domain CHD54_RS18395 PF01098 Cell cycle protein CHD54_RS18400 PF02875 Mur ligase family, glutamate ligase domain CHD54_RS18400 PF08245 Mur ligase middle domain CHD54_RS18405 PF00953 Glycosyl transferase family 4 CHD54_RS18405 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CHD54_RS18410 PF02875 Mur ligase family, glutamate ligase domain CHD54_RS18410 PF01225 Mur ligase family, catalytic domain CHD54_RS18410 PF08245 Mur ligase middle domain CHD54_RS18415 PF01225 Mur ligase family, catalytic domain CHD54_RS18415 PF08245 Mur ligase middle domain CHD54_RS18415 PF02875 Mur ligase family, glutamate ligase domain CHD54_RS18420 PF03717 Penicillin-binding Protein dimerisation domain CHD54_RS18420 PF00905 Penicillin binding protein transpeptidase domain CHD54_RS18425 PF04999 Cell division protein FtsL CHD54_RS18430 PF01795 MraW methylase family CHD54_RS18435 PF02381 MraZ protein, putative antitoxin-like CHD54_RS18440 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS18440 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CHD54_RS18445 PF10369 Small subunit of acetolactate synthase CHD54_RS18450 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHD54_RS18450 PF00205 Thiamine pyrophosphate enzyme, central domain CHD54_RS18450 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHD54_RS18455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS18455 PF03466 LysR substrate binding domain CHD54_RS18460 PF08054 Leucine operon leader peptide CHD54_RS18465 PF00682 HMGL-like CHD54_RS18465 PF08502 LeuA allosteric (dimerisation) domain CHD54_RS18470 PF00180 Isocitrate/isopropylmalate dehydrogenase CHD54_RS18475 PF00330 Aconitase family (aconitate hydratase) CHD54_RS18480 PF00694 Aconitase C-terminal domain CHD54_RS18485 PF07690 Major Facilitator Superfamily CHD54_RS18495 PF12793 Sugar transport-related sRNA regulator N-term CHD54_RS18495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHD54_RS18505 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS18510 PF00005 ABC transporter CHD54_RS18515 PF09335 SNARE associated Golgi protein CHD54_RS18530 PF12833 Helix-turn-helix domain CHD54_RS18530 PF02311 AraC-like ligand binding domain CHD54_RS18535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CHD54_RS18540 PF02610 L-arabinose isomerase CHD54_RS18540 PF11762 L-arabinose isomerase C-terminal domain CHD54_RS18545 PF00596 Class II Aldolase and Adducin N-terminal domain CHD54_RS18565 PF00136 DNA polymerase family B CHD54_RS18565 PF03104 DNA polymerase family B, exonuclease domain CHD54_RS18570 PF18337 RapA N-terminal Tudor like domain CHD54_RS18570 PF00271 Helicase conserved C-terminal domain CHD54_RS18570 PF12137 RNA polymerase recycling family C-terminal CHD54_RS18570 PF00176 SNF2 family N-terminal domain CHD54_RS18570 PF18339 RapA N-terminal Tudor like domain 1 CHD54_RS18575 PF00849 RNA pseudouridylate synthase CHD54_RS18580 PF00226 DnaJ domain CHD54_RS18580 PF05099 Tellurite resistance protein TerB CHD54_RS18585 PF04453 LPS transport system D CHD54_RS18585 PF03968 OstA-like protein CHD54_RS18590 PF09312 SurA N-terminal domain CHD54_RS18590 PF00639 PPIC-type PPIASE domain CHD54_RS18595 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CHD54_RS18600 PF00398 Ribosomal RNA adenine dimethylase CHD54_RS18605 PF04379 ApaG domain CHD54_RS18610 PF00149 Calcineurin-like phosphoesterase CHD54_RS18615 PF00186 Dihydrofolate reductase CHD54_RS18620 PF00999 Sodium/hydrogen exchanger family CHD54_RS18620 PF02254 TrkA-N domain CHD54_RS18625 PF02525 Flavodoxin-like fold CHD54_RS18630 PF06004 Bacterial protein of unknown function (DUF903) CHD54_RS18635 PF00083 Sugar (and other) transporter CHD54_RS18645 PF01494 FAD binding domain CHD54_RS18650 PF01012 Electron transfer flavoprotein domain CHD54_RS18650 PF00766 Electron transfer flavoprotein FAD-binding domain CHD54_RS18655 PF01012 Electron transfer flavoprotein domain CHD54_RS18660 PF02028 BCCT, betaine/carnitine/choline family transporter CHD54_RS18665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHD54_RS18665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHD54_RS18665 PF02770 Acyl-CoA dehydrogenase, middle domain CHD54_RS18670 PF02515 CoA-transferase family III CHD54_RS18675 PF00501 AMP-binding enzyme CHD54_RS18675 PF13193 AMP-binding enzyme C-terminal domain CHD54_RS18680 PF00378 Enoyl-CoA hydratase/isomerase CHD54_RS18690 PF00884 Sulfatase CHD54_RS18705 PF07180 CaiF/GrlA transcriptional regulator CHD54_RS18710 PF02142 MGS-like domain CHD54_RS18710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHD54_RS18710 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CHD54_RS18715 PF00117 Glutamine amidotransferase class-I CHD54_RS18715 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CHD54_RS18735 PF01113 Dihydrodipicolinate reductase, N-terminus CHD54_RS18735 PF05173 Dihydrodipicolinate reductase, C-terminus CHD54_RS18740 PF01156 Inosine-uridine preferring nucleoside hydrolase CHD54_RS18745 PF02401 LytB protein CHD54_RS18750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHD54_RS18755 PF01252 Signal peptidase (SPase) II CHD54_RS18760 PF06827 Zinc finger found in FPG and IleRS CHD54_RS18760 PF08264 Anticodon-binding domain of tRNA CHD54_RS18760 PF00133 tRNA synthetases class I (I, L, M and V) CHD54_RS18765 PF01687 Riboflavin kinase CHD54_RS18765 PF06574 FAD synthetase CHD54_RS18775 PF01649 Ribosomal protein S20 CHD54_RS18780 PF03466 LysR substrate binding domain CHD54_RS18780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS18785 PF06965 Na+/H+ antiporter 1 CHD54_RS18800 PF04055 Radical SAM superfamily CHD54_RS18800 PF13186 Iron-sulfur cluster-binding domain CHD54_RS18805 PF00884 Sulfatase CHD54_RS18805 PF16385 Domain of unknown function CHD54_RS18815 PF00149 Calcineurin-like phosphoesterase CHD54_RS18815 PF02872 5'-nucleotidase, C-terminal domain CHD54_RS18860 PF00704 Glycosyl hydrolases family 18 CHD54_RS18880 PF03466 LysR substrate binding domain CHD54_RS18880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS18885 PF00226 DnaJ domain CHD54_RS18885 PF01556 DnaJ C terminal domain CHD54_RS18885 PF00684 DnaJ central domain CHD54_RS18890 PF00012 Hsp70 protein CHD54_RS18895 PF10807 Protein of unknown function (DUF2541) CHD54_RS18900 PF03981 Ubiquinol-cytochrome C chaperone CHD54_RS18900 PF13099 Domain of unknown function (DUF3944) CHD54_RS18905 PF01184 GPR1/FUN34/yaaH family CHD54_RS18910 PF00994 Probable molybdopterin binding domain CHD54_RS18915 PF00923 Transaldolase/Fructose-6-phosphate aldolase CHD54_RS18920 PF01235 Sodium:alanine symporter family CHD54_RS18925 PF03883 Peroxide stress protein YaaA CHD54_RS18930 PF14821 Threonine synthase N terminus CHD54_RS18930 PF00291 Pyridoxal-phosphate dependent enzyme CHD54_RS18935 PF00288 GHMP kinases N terminal domain CHD54_RS18935 PF08544 GHMP kinases C terminal CHD54_RS18940 PF03447 Homoserine dehydrogenase, NAD binding domain CHD54_RS18940 PF00742 Homoserine dehydrogenase CHD54_RS18940 PF13840 ACT domain CHD54_RS18940 PF00696 Amino acid kinase family CHD54_RS18940 PF01842 ACT domain CHD54_RS18945 PF08254 Threonine leader peptide CHD54_RS18950 PF00588 SpoU rRNA Methylase family CHD54_RS18960 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS18960 PF00072 Response regulator receiver domain CHD54_RS18970 PF15977 Winged helix-turn-helix DNA binding CHD54_RS18980 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CHD54_RS18980 PF02753 Pili assembly chaperone PapD, C-terminal domain CHD54_RS18985 PF13953 PapC C-terminal domain CHD54_RS18985 PF13954 PapC N-terminal domain CHD54_RS18985 PF00577 Outer membrane usher protein CHD54_RS19005 PF05981 CreA protein CHD54_RS19010 PF06445 GyrI-like small molecule binding domain CHD54_RS19010 PF12833 Helix-turn-helix domain CHD54_RS19015 PF00300 Histidine phosphatase superfamily (branch 1) CHD54_RS19020 PF01931 Protein of unknown function DUF84 CHD54_RS19025 PF01371 Trp repressor protein CHD54_RS19030 PF14718 Soluble lytic murein transglycosylase L domain CHD54_RS19030 PF01464 Transglycosylase SLT domain CHD54_RS19035 PF12848 ABC transporter CHD54_RS19035 PF00005 ABC transporter CHD54_RS19040 PF01381 Helix-turn-helix CHD54_RS19040 PF13521 AAA domain CHD54_RS19045 PF18073 Rubredoxin metal binding domain CHD54_RS19050 PF18429 Domain of unknown function (DUF5609) CHD54_RS19060 PF10144 Bacterial virulence factor haemolysin CHD54_RS19065 PF10437 Bacterial lipoate protein ligase C-terminus CHD54_RS19065 PF03099 Biotin/lipoate A/B protein ligase family CHD54_RS19070 PF01048 Phosphorylase superfamily CHD54_RS19075 PF01676 Metalloenzyme superfamily CHD54_RS19080 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CHD54_RS19080 PF00591 Glycosyl transferase family, a/b domain CHD54_RS19080 PF02885 Glycosyl transferase family, helical bundle domain CHD54_RS19085 PF01791 DeoC/LacD family aldolase CHD54_RS19090 PF11230 Protein of unknown function (DUF3029) CHD54_RS19095 PF04055 Radical SAM superfamily CHD54_RS19100 PF01026 TatD related DNase CHD54_RS19105 PF01734 Patatin-like phospholipase CHD54_RS19110 PF07043 Protein of unknown function (DUF1328) CHD54_RS19115 PF04972 BON domain CHD54_RS19120 PF16658 Class II release factor RF3, C-terminal domain CHD54_RS19120 PF03144 Elongation factor Tu domain 2 CHD54_RS19120 PF00009 Elongation factor Tu GTP binding domain CHD54_RS19125 PF13419 Haloacid dehalogenase-like hydrolase CHD54_RS19130 PF00583 Acetyltransferase (GNAT) family CHD54_RS19135 PF03603 DNA polymerase III psi subunit CHD54_RS19140 PF08468 Methyltransferase small domain N-terminal CHD54_RS19140 PF05175 Methyltransferase small domain CHD54_RS19160 PF07256 Protein of unknown function (DUF1435) CHD54_RS19165 PF00990 Diguanylate cyclase, GGDEF domain CHD54_RS19165 PF05230 MASE2 domain CHD54_RS19170 PF06276 Ferric iron reductase FhuF-like transporter CHD54_RS19170 PF11575 FhuF 2Fe-2S C-terminal domain CHD54_RS19175 PF04073 Aminoacyl-tRNA editing domain CHD54_RS19180 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS19185 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS19195 PF06738 Putative threonine/serine exporter CHD54_RS19200 PF12821 Threonine/Serine exporter, ThrE CHD54_RS19205 PF17948 DnaT DNA-binding domain CHD54_RS19210 PF01695 IstB-like ATP binding protein CHD54_RS19215 PF10696 Protein of unknown function (DUF2501) CHD54_RS19220 PF00884 Sulfatase CHD54_RS19225 PF01380 SIS domain CHD54_RS19230 PF01380 SIS domain CHD54_RS19235 PF03613 PTS system mannose/fructose/sorbose family IID component CHD54_RS19240 PF03609 PTS system sorbose-specific iic component CHD54_RS19245 PF03830 PTS system sorbose subfamily IIB component CHD54_RS19255 PF00158 Sigma-54 interaction domain CHD54_RS19255 PF00874 PRD domain CHD54_RS19260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHD54_RS19260 PF02203 Tar ligand binding domain homologue CHD54_RS19260 PF00672 HAMP domain CHD54_RS19265 PF13722 5TM C-terminal transporter carbon starvation CstA CHD54_RS19265 PF02554 Carbon starvation protein CstA CHD54_RS19270 PF04328 Selenoprotein, putative CHD54_RS19275 PF07683 Cobalamin synthesis protein cobW C-terminal domain CHD54_RS19275 PF02492 CobW/HypB/UreG, nucleotide-binding domain CHD54_RS19290 PF04471 Restriction endonuclease CHD54_RS19290 PF14338 Mrr N-terminal domain CHD54_RS19295 PF04851 Type III restriction enzyme, res subunit CHD54_RS19295 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CHD54_RS19295 PF00271 Helicase conserved C-terminal domain CHD54_RS19295 PF08463 EcoEI R protein C-terminal CHD54_RS19300 PF02384 N-6 DNA Methylase CHD54_RS19305 PF01420 Type I restriction modification DNA specificity domain CHD54_RS19310 PF08845 Toxin SymE, type I toxin-antitoxin system CHD54_RS19325 PF00171 Aldehyde dehydrogenase family CHD54_RS19335 PF07690 Major Facilitator Superfamily CHD54_RS19340 PF04286 Protein of unknown function (DUF445) CHD54_RS19345 PF06779 Uncharacterised MFS-type transporter YbfB CHD54_RS19355 PF07670 Nucleoside recognition CHD54_RS19360 PF07670 Nucleoside recognition CHD54_RS19365 PF01979 Amidohydrolase family CHD54_RS19370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS19370 PF03466 LysR substrate binding domain CHD54_RS19375 PF01177 Asp/Glu/Hydantoin racemase CHD54_RS19385 PF00579 tRNA synthetases class I (W and Y) CHD54_RS19390 PF07729 FCD domain CHD54_RS19390 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS19395 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CHD54_RS19395 PF03625 Domain of unknown function DUF302 CHD54_RS19410 PF03830 PTS system sorbose subfamily IIB component CHD54_RS19415 PF03609 PTS system sorbose-specific iic component CHD54_RS19420 PF03613 PTS system mannose/fructose/sorbose family IID component CHD54_RS19430 PF07470 Glycosyl Hydrolase Family 88 CHD54_RS19445 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain CHD54_RS19445 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain CHD54_RS19445 PF02278 Polysaccharide lyase family 8, super-sandwich domain CHD54_RS19460 PF09857 Putative toxin of bacterial toxin-antitoxin pair CHD54_RS19465 PF13847 Methyltransferase domain CHD54_RS19520 PF13356 Arm DNA-binding domain CHD54_RS19520 PF00589 Phage integrase family CHD54_RS19530 PF00107 Zinc-binding dehydrogenase CHD54_RS19530 PF08240 Alcohol dehydrogenase GroES-like domain CHD54_RS19535 PF01202 Shikimate kinase CHD54_RS19540 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS19545 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS19550 PF03739 Lipopolysaccharide export system permease LptF/LptG CHD54_RS19555 PF03739 Lipopolysaccharide export system permease LptF/LptG CHD54_RS19565 PF00883 Cytosol aminopeptidase family, catalytic domain CHD54_RS19565 PF02789 Cytosol aminopeptidase family, N-terminal domain CHD54_RS19570 PF04364 DNA polymerase III chi subunit, HolC CHD54_RS19575 PF10458 Valyl tRNA synthetase tRNA binding arm CHD54_RS19575 PF00133 tRNA synthetases class I (I, L, M and V) CHD54_RS19575 PF08264 Anticodon-binding domain of tRNA CHD54_RS19605 PF00583 Acetyltransferase (GNAT) family CHD54_RS19615 PF06877 Regulator of ribonuclease activity B CHD54_RS19620 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CHD54_RS19620 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CHD54_RS19625 PF04074 YhcH/YjgK/YiaL CHD54_RS19640 PF00696 Amino acid kinase family CHD54_RS19645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CHD54_RS19645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CHD54_RS19650 PF03606 C4-dicarboxylate anaerobic carrier CHD54_RS19655 PF02863 Arginine repressor, C-terminal domain CHD54_RS19655 PF01316 Arginine repressor, DNA binding domain CHD54_RS19665 PF08052 PyrBI operon leader peptide CHD54_RS19670 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CHD54_RS19670 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CHD54_RS19675 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CHD54_RS19675 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CHD54_RS19680 PF01042 Endoribonuclease L-PSP CHD54_RS19685 PF00690 Cation transporter/ATPase, N-terminus CHD54_RS19685 PF00689 Cation transporting ATPase, C-terminus CHD54_RS19690 PF17059 MgtA leader peptide CHD54_RS19695 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS19700 PF00367 phosphotransferase system, EIIB CHD54_RS19700 PF02378 Phosphotransferase system, EIIC CHD54_RS19705 PF00128 Alpha amylase, catalytic domain CHD54_RS19705 PF11941 Domain of unknown function (DUF3459) CHD54_RS19710 PF13597 Anaerobic ribonucleoside-triphosphate reductase CHD54_RS19710 PF03477 ATP cone domain CHD54_RS19720 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CHD54_RS19725 PF01850 PIN domain CHD54_RS19730 PF00874 PRD domain CHD54_RS19730 PF05043 Mga helix-turn-helix domain CHD54_RS19730 PF08279 HTH domain CHD54_RS19730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHD54_RS19735 PF07071 KDGP aldolase CHD54_RS19740 PF03841 L-seryl-tRNA selenium transferase CHD54_RS19745 PF01979 Amidohydrolase family CHD54_RS19775 PF07361 Cytochrome b562 CHD54_RS19780 PF01523 Putative modulator of DNA gyrase CHD54_RS19785 PF04751 Protein of unknown function (DUF615) CHD54_RS19790 PF00005 ABC transporter CHD54_RS19790 PF00664 ABC transporter transmembrane region CHD54_RS19790 PF03412 Peptidase C39 family CHD54_RS19820 PF08245 Mur ligase middle domain CHD54_RS19820 PF02875 Mur ligase family, glutamate ligase domain CHD54_RS19820 PF01225 Mur ligase family, catalytic domain CHD54_RS19825 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CHD54_RS19830 PF02203 Tar ligand binding domain homologue CHD54_RS19830 PF00672 HAMP domain CHD54_RS19830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHD54_RS19835 PF00719 Inorganic pyrophosphatase CHD54_RS19840 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CHD54_RS19845 PF04357 TamB, inner membrane protein subunit of TAM complex CHD54_RS19850 PF01103 Surface antigen CHD54_RS19850 PF07244 Surface antigen variable number repeat CHD54_RS19850 PF17243 POTRA domain TamA domain 1 CHD54_RS19855 PF01625 Peptide methionine sulfoxide reductase CHD54_RS19860 PF00571 CBS domain CHD54_RS19860 PF03471 Transporter associated domain CHD54_RS19860 PF01595 Cyclin M transmembrane N-terminal domain CHD54_RS19865 PF06526 Protein of unknown function (DUF1107) CHD54_RS19875 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CHD54_RS19880 PF00459 Inositol monophosphatase family CHD54_RS19890 PF00149 Calcineurin-like phosphoesterase CHD54_RS19890 PF02872 5'-nucleotidase, C-terminal domain CHD54_RS19895 PF01638 HxlR-like helix-turn-helix CHD54_RS19900 PF05368 NmrA-like family CHD54_RS19905 PF00892 EamA-like transporter family CHD54_RS19910 PF01814 Hemerythrin HHE cation binding domain CHD54_RS19910 PF04405 Domain of Unknown function (DUF542) CHD54_RS19915 PF00324 Amino acid permease CHD54_RS19920 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CHD54_RS19920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHD54_RS19925 PF08525 Opacity-associated protein A N-terminal motif CHD54_RS19925 PF04225 Opacity-associated protein A LysM-like domain CHD54_RS19935 PF03948 Ribosomal protein L9, C-terminal domain CHD54_RS19935 PF01281 Ribosomal protein L9, N-terminal domain CHD54_RS19940 PF01084 Ribosomal protein S18 CHD54_RS19945 PF00436 Single-strand binding protein family CHD54_RS19950 PF01250 Ribosomal protein S6 CHD54_RS19960 PF07338 Protein of unknown function (DUF1471) CHD54_RS19965 PF00596 Class II Aldolase and Adducin N-terminal domain CHD54_RS19970 PF01261 Xylose isomerase-like TIM barrel CHD54_RS19975 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CHD54_RS19980 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHD54_RS19985 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CHD54_RS19990 PF03611 PTS system sugar-specific permease component CHD54_RS20000 PF08220 DeoR-like helix-turn-helix domain CHD54_RS20000 PF00455 DeoR C terminal sensor domain CHD54_RS20005 PF00326 Prolyl oligopeptidase family CHD54_RS20010 PF07338 Protein of unknown function (DUF1471) CHD54_RS20015 PF07338 Protein of unknown function (DUF1471) CHD54_RS20020 PF02770 Acyl-CoA dehydrogenase, middle domain CHD54_RS20020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHD54_RS20020 PF18158 Adaptive response protein AidB N-terminal domain CHD54_RS20025 PF04012 PspA/IM30 family CHD54_RS20035 PF00588 SpoU rRNA Methylase family CHD54_RS20035 PF08032 RNA 2'-O ribose methyltransferase substrate binding CHD54_RS20040 PF17876 Cold shock domain CHD54_RS20040 PF08461 Ribonuclease R winged-helix domain CHD54_RS20040 PF00575 S1 RNA binding domain CHD54_RS20040 PF00773 RNB domain CHD54_RS20040 PF08206 Ribonuclease B OB domain CHD54_RS20045 PF02082 Transcriptional regulator CHD54_RS20055 PF00709 Adenylosuccinate synthetase CHD54_RS20060 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CHD54_RS20080 PF02801 Beta-ketoacyl synthase, C-terminal domain CHD54_RS20080 PF00109 Beta-ketoacyl synthase, N-terminal domain CHD54_RS20090 PF00005 ABC transporter CHD54_RS20090 PF12704 MacB-like periplasmic core domain CHD54_RS20090 PF02687 FtsX-like permease family CHD54_RS20095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHD54_RS20120 PF01145 SPFH domain / Band 7 family CHD54_RS20125 PF12221 Bacterial membrane protein N terminal CHD54_RS20125 PF01145 SPFH domain / Band 7 family CHD54_RS20130 PF01926 50S ribosome-binding GTPase CHD54_RS20130 PF13167 GTP-binding GTPase N-terminal CHD54_RS20130 PF16360 GTP-binding GTPase Middle Region CHD54_RS20135 PF17209 Hfq protein CHD54_RS20145 PF01119 DNA mismatch repair protein, C-terminal domain CHD54_RS20145 PF08676 MutL C terminal dimerisation domain CHD54_RS20150 PF01520 N-acetylmuramoyl-L-alanine amidase CHD54_RS20155 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CHD54_RS20160 PF01256 Carbohydrate kinase CHD54_RS20160 PF03853 YjeF-related protein N-terminus CHD54_RS20165 PF08331 Domain of unknown function (DUF1730) CHD54_RS20185 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHD54_RS20190 PF00929 Exonuclease CHD54_RS20195 PF03193 RsgA GTPase CHD54_RS20200 PF02666 Phosphatidylserine decarboxylase CHD54_RS20205 PF12794 Mechanosensitive ion channel inner membrane domain 1 CHD54_RS20205 PF12795 Mechanosensitive ion channel porin domain CHD54_RS20205 PF00924 Mechanosensitive ion channel CHD54_RS20220 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CHD54_RS20220 PF02753 Pili assembly chaperone PapD, C-terminal domain CHD54_RS20225 PF13954 PapC N-terminal domain CHD54_RS20225 PF00577 Outer membrane usher protein CHD54_RS20225 PF13953 PapC C-terminal domain CHD54_RS20230 PF00419 Fimbrial protein CHD54_RS20250 PF13505 Outer membrane protein beta-barrel domain CHD54_RS20255 PF13520 Amino acid permease CHD54_RS20260 PF00152 tRNA synthetases class II (D, K and N) CHD54_RS20265 PF02910 Fumarate reductase flavoprotein C-term CHD54_RS20265 PF00890 FAD binding domain CHD54_RS20270 PF13183 4Fe-4S dicluster domain CHD54_RS20270 PF13085 2Fe-2S iron-sulfur cluster binding domain CHD54_RS20275 PF02300 Fumarate reductase subunit C CHD54_RS20280 PF02313 Fumarate reductase subunit D CHD54_RS20285 PF08212 Lipocalin-like domain CHD54_RS20290 PF00893 Small Multidrug Resistance protein CHD54_RS20295 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS20300 PF08085 Entericidin EcnA/B family CHD54_RS20305 PF08085 Entericidin EcnA/B family CHD54_RS20310 PF08207 Elongation factor P (EF-P) KOW-like domain CHD54_RS20310 PF01132 Elongation factor P (EF-P) OB domain CHD54_RS20310 PF09285 Elongation factor P, C-terminal CHD54_RS20315 PF04055 Radical SAM superfamily CHD54_RS20320 PF15922 YjeJ-like CHD54_RS20325 PF13698 Domain of unknown function (DUF4156) CHD54_RS20330 PF00118 TCP-1/cpn60 chaperonin family CHD54_RS20335 PF00166 Chaperonin 10 Kd subunit CHD54_RS20340 PF13520 Amino acid permease CHD54_RS20345 PF04186 FxsA cytoplasmic membrane protein CHD54_RS20350 PF10415 Fumarase C C-terminus CHD54_RS20350 PF00206 Lyase CHD54_RS20355 PF03605 Anaerobic c4-dicarboxylate membrane transporter CHD54_RS20360 PF03091 CutA1 divalent ion tolerance protein CHD54_RS20365 PF11412 Disulphide bond corrector protein DsbC CHD54_RS20365 PF02683 Cytochrome C biogenesis protein transmembrane region CHD54_RS20395 PF06977 SdiA-regulated CHD54_RS20405 PF10636 Hemin uptake protein hemP CHD54_RS20410 PF00593 TonB dependent receptor CHD54_RS20410 PF07715 TonB-dependent Receptor Plug Domain CHD54_RS20415 PF05171 Haemin-degrading HemS.ChuX domain CHD54_RS20420 PF01497 Periplasmic binding protein CHD54_RS20425 PF01032 FecCD transport family CHD54_RS20430 PF00005 ABC transporter CHD54_RS20435 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CHD54_RS20435 PF17203 Single cache domain 3 CHD54_RS20435 PF00989 PAS fold CHD54_RS20435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS20440 PF00072 Response regulator receiver domain CHD54_RS20450 PF03605 Anaerobic c4-dicarboxylate membrane transporter CHD54_RS20455 PF05683 Fumarase C-terminus CHD54_RS20455 PF05681 Fumarate hydratase (Fumerase) CHD54_RS20465 PF02056 Family 4 glycosyl hydrolase CHD54_RS20465 PF11975 Family 4 glycosyl hydrolase C-terminal domain CHD54_RS20470 PF12833 Helix-turn-helix domain CHD54_RS20475 PF01276 Orn/Lys/Arg decarboxylase, major domain CHD54_RS20475 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CHD54_RS20475 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CHD54_RS20480 PF12833 Helix-turn-helix domain CHD54_RS20485 PF13520 Amino acid permease CHD54_RS20490 PF00884 Sulfatase CHD54_RS20490 PF08019 Phosphoethanolamine transferase EptA/EptB CHD54_RS20495 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS20495 PF00072 Response regulator receiver domain CHD54_RS20500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS20500 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS20510 PF08946 Osmosensory transporter coiled coil CHD54_RS20510 PF00083 Sugar (and other) transporter CHD54_RS20515 PF08274 PhnA Zinc-Ribbon CHD54_RS20515 PF03831 PhnA domain CHD54_RS20520 PF06983 3-demethylubiquinone-9 3-methyltransferase CHD54_RS20525 PF00583 Acetyltransferase (GNAT) family CHD54_RS20535 PF14863 Alkyl sulfatase dimerisation CHD54_RS20535 PF00753 Metallo-beta-lactamase superfamily CHD54_RS20535 PF14864 Alkyl sulfatase C-terminal CHD54_RS20540 PF17090 Uncharacterised protein family CHD54_RS20545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHD54_RS20545 PF00529 HlyD membrane-fusion protein of T1SS CHD54_RS20550 PF04632 Fusaric acid resistance protein family CHD54_RS20555 PF02321 Outer membrane efflux protein CHD54_RS20565 PF08238 Sel1 repeat CHD54_RS20570 PF00375 Sodium:dicarboxylate symporter family CHD54_RS20580 PF03918 Cytochrome C biogenesis protein CHD54_RS20585 PF01578 Cytochrome C assembly protein CHD54_RS20585 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CHD54_RS20590 PF03916 Polysulphide reductase, NrfD CHD54_RS20595 PF13247 4Fe-4S dicluster domain CHD54_RS20595 PF00037 4Fe-4S binding domain CHD54_RS20600 PF13435 Cytochrome c554 and c-prime CHD54_RS20600 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CHD54_RS20605 PF02335 Cytochrome c552 CHD54_RS20610 PF13193 AMP-binding enzyme C-terminal domain CHD54_RS20610 PF00501 AMP-binding enzyme CHD54_RS20610 PF16177 Acetyl-coenzyme A synthetase N-terminus CHD54_RS20615 PF04341 Protein of unknown function, DUF485 CHD54_RS20620 PF00474 Sodium:solute symporter family CHD54_RS20625 PF04172 LrgB-like family CHD54_RS20630 PF03788 LrgA family CHD54_RS20635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS20635 PF03466 LysR substrate binding domain CHD54_RS20640 PF00999 Sodium/hydrogen exchanger family CHD54_RS20650 PF00860 Permease family CHD54_RS20660 PF09278 MerR, DNA binding CHD54_RS20660 PF00376 MerR family regulatory protein CHD54_RS20665 PF12833 Helix-turn-helix domain CHD54_RS20670 PF00563 EAL domain CHD54_RS20670 PF12792 CSS motif domain associated with EAL CHD54_RS20675 PF15940 Family of unknown function CHD54_RS20725 PF00436 Single-strand binding protein family CHD54_RS20735 PF00005 ABC transporter CHD54_RS20735 PF17755 UvrA DNA-binding domain CHD54_RS20735 PF17760 UvrA interaction domain CHD54_RS20750 PF04237 YjbR CHD54_RS20755 PF01894 Uncharacterised protein family UPF0047 CHD54_RS20760 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CHD54_RS20765 PF00155 Aminotransferase class I and II CHD54_RS20770 PF00842 Alanine racemase, C-terminal domain CHD54_RS20770 PF01168 Alanine racemase, N-terminal domain CHD54_RS20775 PF03796 DnaB-like helicase C terminal domain CHD54_RS20775 PF00772 DnaB-like helicase N terminal domain CHD54_RS20780 PF00107 Zinc-binding dehydrogenase CHD54_RS20780 PF08240 Alcohol dehydrogenase GroES-like domain CHD54_RS20785 PF09583 Phage shock protein G (Phageshock_PspG) CHD54_RS20790 PF01207 Dihydrouridine synthase (Dus) CHD54_RS20810 PF01475 Ferric uptake regulator family CHD54_RS20815 PF05532 CsbD-like CHD54_RS20825 PF01554 MatE CHD54_RS20830 PF01726 LexA DNA binding domain CHD54_RS20830 PF00717 Peptidase S24-like CHD54_RS20835 PF01219 Prokaryotic diacylglycerol kinase CHD54_RS20840 PF01553 Acyltransferase CHD54_RS20845 PF01040 UbiA prenyltransferase family CHD54_RS20850 PF04345 Chorismate lyase CHD54_RS20855 PF07148 Maltose operon periplasmic protein precursor (MalM) CHD54_RS20860 PF02264 LamB porin CHD54_RS20865 PF17912 MalK OB fold domain CHD54_RS20865 PF00005 ABC transporter CHD54_RS20870 PF01547 Bacterial extracellular solute-binding protein CHD54_RS20875 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS20875 PF14785 Maltose transport system permease protein MalF P2 domain CHD54_RS20880 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS20885 PF00083 Sugar (and other) transporter CHD54_RS20890 PF06146 Phosphate-starvation-inducible E CHD54_RS20895 PF06082 Exopolysaccharide biosynthesis protein YbjH CHD54_RS20900 PF06251 Capsule biosynthesis GfcC CHD54_RS20905 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF CHD54_RS20910 PF11106 Exopolysaccharide production protein YjbE CHD54_RS20915 PF00342 Phosphoglucose isomerase CHD54_RS20920 PF01842 ACT domain CHD54_RS20920 PF00696 Amino acid kinase family CHD54_RS20925 PF11656 YjbD family (DUF3811) CHD54_RS20930 PF01479 S4 domain CHD54_RS20930 PF00849 RNA pseudouridylate synthase CHD54_RS20935 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CHD54_RS20945 PF03575 Peptidase family S51 CHD54_RS20950 PF02690 Na+/Pi-cotransporter CHD54_RS20955 PF02574 Homocysteine S-methyltransferase CHD54_RS20955 PF02310 B12 binding domain CHD54_RS20955 PF02607 B12 binding domain CHD54_RS20955 PF02965 Vitamin B12 dependent methionine synthase, activation domain CHD54_RS20955 PF00809 Pterin binding enzyme CHD54_RS20965 PF01614 Bacterial transcriptional regulator CHD54_RS20965 PF09339 IclR helix-turn-helix domain CHD54_RS20975 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CHD54_RS20980 PF00463 Isocitrate lyase family CHD54_RS20985 PF01274 Malate synthase CHD54_RS20990 PF04204 Homoserine O-succinyltransferase CHD54_RS20995 PF13673 Acetyltransferase (GNAT) domain CHD54_RS21025 PF02142 MGS-like domain CHD54_RS21025 PF01808 AICARFT/IMPCHase bienzyme CHD54_RS21030 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CHD54_RS21030 PF02843 Phosphoribosylglycinamide synthetase, C domain CHD54_RS21030 PF02844 Phosphoribosylglycinamide synthetase, N domain CHD54_RS21035 PF00158 Sigma-54 interaction domain CHD54_RS21035 PF00072 Response regulator receiver domain CHD54_RS21035 PF02954 Bacterial regulatory protein, Fis family CHD54_RS21040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS21040 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS21045 PF13801 Heavy-metal resistance CHD54_RS21050 PF07356 Protein of unknown function (DUF1481) CHD54_RS21055 PF00216 Bacterial DNA-binding protein CHD54_RS21060 PF04222 Protein of unknown function (DUF416) CHD54_RS21065 PF04493 Endonuclease V CHD54_RS21070 PF01208 Uroporphyrinogen decarboxylase (URO-D) CHD54_RS21075 PF09297 NADH pyrophosphatase zinc ribbon domain CHD54_RS21075 PF00293 NUDIX domain CHD54_RS21080 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CHD54_RS21085 PF01964 Radical SAM ThiC family CHD54_RS21085 PF13667 ThiC-associated domain CHD54_RS21090 PF02581 Thiamine monophosphate synthase CHD54_RS21095 PF00899 ThiF family CHD54_RS21100 PF02597 ThiS family CHD54_RS21105 PF05690 Thiazole biosynthesis protein ThiG CHD54_RS21110 PF06968 Biotin and Thiamin Synthesis associated domain CHD54_RS21110 PF04055 Radical SAM superfamily CHD54_RS21120 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CHD54_RS21130 PF04997 RNA polymerase Rpb1, domain 1 CHD54_RS21130 PF05000 RNA polymerase Rpb1, domain 4 CHD54_RS21130 PF04983 RNA polymerase Rpb1, domain 3 CHD54_RS21130 PF04998 RNA polymerase Rpb1, domain 5 CHD54_RS21130 PF00623 RNA polymerase Rpb1, domain 2 CHD54_RS21135 PF04560 RNA polymerase Rpb2, domain 7 CHD54_RS21135 PF00562 RNA polymerase Rpb2, domain 6 CHD54_RS21135 PF04561 RNA polymerase Rpb2, domain 2 CHD54_RS21135 PF04563 RNA polymerase beta subunit CHD54_RS21135 PF10385 RNA polymerase beta subunit external 1 domain CHD54_RS21135 PF04565 RNA polymerase Rpb2, domain 3 CHD54_RS21140 PF00542 Ribosomal protein L7/L12 C-terminal domain CHD54_RS21140 PF16320 Ribosomal protein L7/L12 dimerisation domain CHD54_RS21145 PF00466 Ribosomal protein L10 CHD54_RS21150 PF00687 Ribosomal protein L1p/L10e family CHD54_RS21155 PF00298 Ribosomal protein L11, RNA binding domain CHD54_RS21155 PF03946 Ribosomal protein L11, N-terminal domain CHD54_RS21160 PF00467 KOW motif CHD54_RS21160 PF02357 Transcription termination factor nusG CHD54_RS21165 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CHD54_RS21170 PF03143 Elongation factor Tu C-terminal domain CHD54_RS21170 PF00009 Elongation factor Tu GTP binding domain CHD54_RS21170 PF03144 Elongation factor Tu domain 2 CHD54_RS21200 PF00485 Phosphoribulokinase / Uridine kinase family CHD54_RS21205 PF08279 HTH domain CHD54_RS21205 PF02237 Biotin protein ligase C terminal domain CHD54_RS21205 PF03099 Biotin/lipoate A/B protein ligase family CHD54_RS21210 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CHD54_RS21210 PF01565 FAD binding domain CHD54_RS21240 PF01177 Asp/Glu/Hydantoin racemase CHD54_RS21245 PF07715 TonB-dependent Receptor Plug Domain CHD54_RS21245 PF00593 TonB dependent receptor CHD54_RS21250 PF05958 tRNA (Uracil-5-)-methyltransferase CHD54_RS21255 PF07226 Protein of unknown function (DUF1422) CHD54_RS21260 PF00440 Bacterial regulatory proteins, tetR family CHD54_RS21265 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHD54_RS21265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHD54_RS21270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS21270 PF03466 LysR substrate binding domain CHD54_RS21280 PF00206 Lyase CHD54_RS21280 PF14698 Argininosuccinate lyase C-terminal CHD54_RS21285 PF00696 Amino acid kinase family CHD54_RS21290 PF01118 Semialdehyde dehydrogenase, NAD binding domain CHD54_RS21290 PF02774 Semialdehyde dehydrogenase, dimerisation domain CHD54_RS21295 PF01546 Peptidase family M20/M25/M40 CHD54_RS21295 PF07687 Peptidase dimerisation domain CHD54_RS21300 PF00311 Phosphoenolpyruvate carboxylase CHD54_RS21305 PF00884 Sulfatase CHD54_RS21310 PF12833 Helix-turn-helix domain CHD54_RS21315 PF00923 Transaldolase/Fructose-6-phosphate aldolase CHD54_RS21320 PF00465 Iron-containing alcohol dehydrogenase CHD54_RS21325 PF00141 Peroxidase CHD54_RS21330 PF02219 Methylenetetrahydrofolate reductase CHD54_RS21345 PF03447 Homoserine dehydrogenase, NAD binding domain CHD54_RS21345 PF00696 Amino acid kinase family CHD54_RS21345 PF00742 Homoserine dehydrogenase CHD54_RS21350 PF01053 Cys/Met metabolism PLP-dependent enzyme CHD54_RS21355 PF01340 Met Apo-repressor, MetJ CHD54_RS21365 PF06178 Oligogalacturonate-specific porin protein (KdgM) CHD54_RS21370 PF01197 Ribosomal protein L31 CHD54_RS21375 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CHD54_RS21375 PF00271 Helicase conserved C-terminal domain CHD54_RS21375 PF17764 3′ DNA-binding domain (3′BD) CHD54_RS21375 PF18074 Primosomal protein N C-terminal domain CHD54_RS21375 PF00270 DEAD/DEAH box helicase CHD54_RS21380 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS21385 PF05036 Sporulation related domain CHD54_RS21390 PF00227 Proteasome subunit CHD54_RS21395 PF00004 ATPase family associated with various cellular activities (AAA) CHD54_RS21395 PF07724 AAA domain (Cdc48 subfamily) CHD54_RS21395 PF10431 C-terminal, D2-small domain, of ClpB protein CHD54_RS21400 PF01040 UbiA prenyltransferase family CHD54_RS21405 PF03737 Aldolase/RraA CHD54_RS21415 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CHD54_RS21415 PF08666 SAF domain CHD54_RS21420 PF03812 2-keto-3-deoxygluconate permease CHD54_RS21425 PF02954 Bacterial regulatory protein, Fis family CHD54_RS21425 PF00989 PAS fold CHD54_RS21425 PF00158 Sigma-54 interaction domain CHD54_RS21430 PF06005 Cell division protein ZapB CHD54_RS21435 PF00230 Major intrinsic protein CHD54_RS21440 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CHD54_RS21440 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CHD54_RS21445 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CHD54_RS21450 PF00970 Oxidoreductase FAD-binding domain CHD54_RS21450 PF00175 Oxidoreductase NAD-binding domain CHD54_RS21455 PF05656 Protein of unknown function (DUF805) CHD54_RS21460 PF07305 Protein of unknown function (DUF1454) CHD54_RS21465 PF00121 Triosephosphate isomerase CHD54_RS21470 PF00939 Sodium:sulfate symporter transmembrane region CHD54_RS21480 PF02611 CDP-diacylglycerol pyrophosphatase CHD54_RS21490 PF00365 Phosphofructokinase CHD54_RS21495 PF16916 Dimerisation domain of Zinc Transporter CHD54_RS21495 PF01545 Cation efflux family CHD54_RS21535 PF12792 CSS motif domain associated with EAL CHD54_RS21535 PF00563 EAL domain CHD54_RS21540 PF00563 EAL domain CHD54_RS21540 PF00196 Bacterial regulatory proteins, luxR family CHD54_RS21555 PF12951 Passenger-associated-transport-repeat CHD54_RS21580 PF03412 Peptidase C39 family CHD54_RS21580 PF00005 ABC transporter CHD54_RS21580 PF00664 ABC transporter transmembrane region CHD54_RS21630 PF07813 LTXXQ motif family protein CHD54_RS21635 PF00486 Transcriptional regulatory protein, C terminal CHD54_RS21635 PF00072 Response regulator receiver domain CHD54_RS21640 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS21640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS21640 PF16527 Two-component sensor protein CpxA, periplasmic domain CHD54_RS21640 PF00672 HAMP domain CHD54_RS21645 PF03473 MOSC domain CHD54_RS21645 PF03475 3-alpha domain CHD54_RS21650 PF00701 Dihydrodipicolinate synthetase family CHD54_RS21660 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CHD54_RS21660 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CHD54_RS21665 PF06379 L-rhamnose-proton symport protein (RhaT) CHD54_RS21670 PF12833 Helix-turn-helix domain CHD54_RS21670 PF02311 AraC-like ligand binding domain CHD54_RS21675 PF02311 AraC-like ligand binding domain CHD54_RS21675 PF12833 Helix-turn-helix domain CHD54_RS21685 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CHD54_RS21685 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CHD54_RS21690 PF06134 L-rhamnose isomerase (RhaA) CHD54_RS21695 PF00596 Class II Aldolase and Adducin N-terminal domain CHD54_RS21700 PF00465 Iron-containing alcohol dehydrogenase CHD54_RS21705 PF05336 L-rhamnose mutarotase CHD54_RS21715 PF03591 AzlC protein CHD54_RS21730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHD54_RS21740 PF01116 Fructose-bisphosphate aldolase class-II CHD54_RS21755 PF00365 Phosphofructokinase CHD54_RS21765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHD54_RS21765 PF08279 HTH domain CHD54_RS21770 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHD54_RS21770 PF08279 HTH domain CHD54_RS21790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHD54_RS21790 PF00529 HlyD membrane-fusion protein of T1SS CHD54_RS21795 PF00664 ABC transporter transmembrane region CHD54_RS21795 PF00005 ABC transporter CHD54_RS21795 PF03412 Peptidase C39 family CHD54_RS21815 PF05658 Head domain of trimeric autotransporter adhesin CHD54_RS21815 PF03895 YadA-like membrane anchor domain CHD54_RS21815 PF13018 Extended Signal Peptide of Type V secretion system CHD54_RS21815 PF05662 Coiled stalk of trimeric autotransporter adhesin CHD54_RS21820 PF02634 FdhD/NarQ family CHD54_RS21825 PF01568 Molydopterin dinucleotide binding domain CHD54_RS21825 PF00384 Molybdopterin oxidoreductase CHD54_RS21825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHD54_RS21830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHD54_RS21830 PF01568 Molydopterin dinucleotide binding domain CHD54_RS21830 PF00384 Molybdopterin oxidoreductase CHD54_RS21835 PF09163 Formate dehydrogenase N, transmembrane CHD54_RS21835 PF13247 4Fe-4S dicluster domain CHD54_RS21840 PF01292 Prokaryotic cytochrome b561 CHD54_RS21845 PF04216 Protein involved in formate dehydrogenase formation CHD54_RS21855 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system CHD54_RS21865 PF09500 Putative thioesterase (yiiD_Cterm) CHD54_RS21865 PF00583 Acetyltransferase (GNAT) family CHD54_RS21870 PF02580 D-Tyr-tRNA(Tyr) deacylase CHD54_RS21875 PF03631 Virulence factor BrkB CHD54_RS21880 PF13419 Haloacid dehalogenase-like hydrolase CHD54_RS21885 PF00455 DeoR C terminal sensor domain CHD54_RS21885 PF08220 DeoR-like helix-turn-helix domain CHD54_RS21890 PF00294 pfkB family carbohydrate kinase CHD54_RS21895 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CHD54_RS21895 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CHD54_RS21900 PF01791 DeoC/LacD family aldolase CHD54_RS21910 PF01263 Aldose 1-epimerase CHD54_RS21915 PF01055 Glycosyl hydrolases family 31 CHD54_RS21930 PF06178 Oligogalacturonate-specific porin protein (KdgM) CHD54_RS21935 PF03144 Elongation factor Tu domain 2 CHD54_RS21935 PF00009 Elongation factor Tu GTP binding domain CHD54_RS21935 PF00679 Elongation factor G C-terminus CHD54_RS21940 PF00120 Glutamine synthetase, catalytic domain CHD54_RS21940 PF03951 Glutamine synthetase, beta-Grasp domain CHD54_RS21945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHD54_RS21945 PF00512 His Kinase A (phospho-acceptor) domain CHD54_RS21945 PF00989 PAS fold CHD54_RS21950 PF02954 Bacterial regulatory protein, Fis family CHD54_RS21950 PF00158 Sigma-54 interaction domain CHD54_RS21950 PF00072 Response regulator receiver domain CHD54_RS21960 PF06969 HemN C-terminal domain CHD54_RS21960 PF04055 Radical SAM superfamily CHD54_RS21965 PF04220 Der GTPase activator (YihI) CHD54_RS21975 PF01926 50S ribosome-binding GTPase CHD54_RS21985 PF01367 5'-3' exonuclease, C-terminal SAM fold CHD54_RS21985 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CHD54_RS21985 PF00476 DNA polymerase family A CHD54_RS21985 PF01612 3'-5' exonuclease CHD54_RS21995 PF01553 Acyltransferase CHD54_RS22000 PF01323 DSBA-like thioredoxin domain CHD54_RS22005 PF01636 Phosphotransferase enzyme family CHD54_RS22010 PF06288 Protein of unknown function (DUF1040) CHD54_RS22015 PF12804 MobA-like NTP transferase domain CHD54_RS22020 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CHD54_RS22045 PF12724 Flavodoxin domain CHD54_RS22050 PF02386 Cation transport protein CHD54_RS22055 PF09186 Domain of unknown function (DUF1949) CHD54_RS22055 PF01205 Uncharacterized protein family UPF0029 CHD54_RS22060 PF00557 Metallopeptidase family M24 CHD54_RS22065 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CHD54_RS22065 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CHD54_RS22065 PF00378 Enoyl-CoA hydratase/isomerase CHD54_RS22070 PF02803 Thiolase, C-terminal domain CHD54_RS22070 PF00108 Thiolase, N-terminal domain CHD54_RS22075 PF00970 Oxidoreductase FAD-binding domain CHD54_RS22075 PF00175 Oxidoreductase NAD-binding domain CHD54_RS22080 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CHD54_RS22085 PF02357 Transcription termination factor nusG CHD54_RS22090 PF01026 TatD related DNase CHD54_RS22095 PF00902 Sec-independent protein translocase protein (TatC) CHD54_RS22105 PF02416 mttA/Hcf106 family CHD54_RS22110 PF03109 ABC1 family CHD54_RS22115 PF02036 SCP-2 sterol transfer family CHD54_RS22120 PF01209 ubiE/COQ5 methyltransferase family CHD54_RS22125 PF02646 RmuC family CHD54_RS22130 PF01048 Phosphorylase superfamily CHD54_RS22135 PF01738 Dienelactone hydrolase family CHD54_RS22140 PF13186 Iron-sulfur cluster-binding domain CHD54_RS22140 PF04055 Radical SAM superfamily CHD54_RS22150 PF08267 Cobalamin-independent synthase, N-terminal domain CHD54_RS22150 PF01717 Cobalamin-independent synthase, Catalytic domain CHD54_RS22155 PF03466 LysR substrate binding domain CHD54_RS22155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS22160 PF00892 EamA-like transporter family CHD54_RS22170 PF12146 Serine aminopeptidase, S33 CHD54_RS22175 PF01810 LysE type translocator CHD54_RS22180 PF01810 LysE type translocator CHD54_RS22185 PF16124 RecQ zinc-binding CHD54_RS22185 PF00570 HRDC domain CHD54_RS22185 PF00271 Helicase conserved C-terminal domain CHD54_RS22185 PF00270 DEAD/DEAH box helicase CHD54_RS22185 PF09382 RQC domain CHD54_RS22190 PF02253 Phospholipase A1 CHD54_RS22195 PF03061 Thioesterase superfamily CHD54_RS22200 PF00892 EamA-like transporter family CHD54_RS22215 PF01544 CorA-like Mg2+ transporter protein CHD54_RS22225 PF13361 UvrD-like helicase C-terminal domain CHD54_RS22225 PF00580 UvrD/REP helicase N-terminal domain CHD54_RS22230 PF13419 Haloacid dehalogenase-like hydrolase CHD54_RS22235 PF00589 Phage integrase family CHD54_RS22235 PF02899 Phage integrase, N-terminal SAM-like domain CHD54_RS22240 PF04340 Protein of unknown function, DUF484 CHD54_RS22245 PF01678 Diaminopimelate epimerase CHD54_RS22250 PF13627 Prokaryotic lipoprotein-attachment site CHD54_RS22255 PF01491 Frataxin-like domain CHD54_RS22260 PF12633 Adenylate cyclase NT domain CHD54_RS22260 PF01295 Adenylate cyclase, class-I CHD54_RS22270 PF03900 Porphobilinogen deaminase, C-terminal domain CHD54_RS22270 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CHD54_RS22275 PF02602 Uroporphyrinogen-III synthase HemD CHD54_RS22280 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CHD54_RS22285 PF07719 Tetratricopeptide repeat CHD54_RS22285 PF07219 HemY protein N-terminus CHD54_RS22310 PF00324 Amino acid permease CHD54_RS22315 PF03808 Glycosyl transferase WecB/TagA/CpsF family CHD54_RS22320 PF06899 WzyE protein, O-antigen assembly polymerase CHD54_RS22325 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CHD54_RS22330 PF01943 Polysaccharide biosynthesis protein CHD54_RS22335 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CHD54_RS22345 PF00483 Nucleotidyl transferase CHD54_RS22350 PF16363 GDP-mannose 4,6 dehydratase CHD54_RS22355 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CHD54_RS22355 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CHD54_RS22355 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CHD54_RS22360 PF02350 UDP-N-acetylglucosamine 2-epimerase CHD54_RS22365 PF02706 Chain length determinant protein CHD54_RS22370 PF00953 Glycosyl transferase family 4 CHD54_RS22380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHD54_RS22380 PF07497 Rho termination factor, RNA-binding domain CHD54_RS22380 PF07498 Rho termination factor, N-terminal domain CHD54_RS22390 PF00085 Thioredoxin CHD54_RS22395 PF00270 DEAD/DEAH box helicase CHD54_RS22395 PF00271 Helicase conserved C-terminal domain CHD54_RS22400 PF02541 Ppx/GppA phosphatase family CHD54_RS22405 PF13361 UvrD-like helicase C-terminal domain CHD54_RS22405 PF00580 UvrD/REP helicase N-terminal domain CHD54_RS22410 PF04973 Nicotinamide mononucleotide transporter CHD54_RS22415 PF01048 Phosphorylase superfamily CHD54_RS22430 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CHD54_RS22430 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CHD54_RS22435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS22435 PF03466 LysR substrate binding domain CHD54_RS22440 PF02733 Dak1 domain CHD54_RS22445 PF12241 Trans-2-enoyl-CoA reductase catalytic region CHD54_RS22445 PF07055 Enoyl reductase FAD binding domain CHD54_RS22445 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CHD54_RS22455 PF00291 Pyridoxal-phosphate dependent enzyme CHD54_RS22455 PF00585 C-terminal regulatory domain of Threonine dehydratase CHD54_RS22460 PF00920 Dehydratase family CHD54_RS22465 PF01063 Amino-transferase class IV CHD54_RS22475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHD54_RS22475 PF00205 Thiamine pyrophosphate enzyme, central domain CHD54_RS22475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHD54_RS22480 PF08046 IlvGEDA operon leader peptide CHD54_RS22485 PF01078 Magnesium chelatase, subunit ChlI CHD54_RS22485 PF13335 Magnesium chelatase, subunit ChlI C-terminal CHD54_RS22490 PF04219 Protein of unknown function, DUF CHD54_RS22495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHD54_RS22495 PF03466 LysR substrate binding domain CHD54_RS22530 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS22530 PF07729 FCD domain CHD54_RS22535 PF07690 Major Facilitator Superfamily CHD54_RS22540 PF00356 Bacterial regulatory proteins, lacI family CHD54_RS22545 PF00294 pfkB family carbohydrate kinase CHD54_RS22550 PF13407 Periplasmic binding protein domain CHD54_RS22555 PF02653 Branched-chain amino acid transport system / permease component CHD54_RS22560 PF00005 ABC transporter CHD54_RS22565 PF05025 RbsD / FucU transport protein family CHD54_RS22570 PF02705 K+ potassium transporter CHD54_RS22575 PF07728 AAA domain (dynein-related subfamily) CHD54_RS22575 PF17868 AAA lid domain CHD54_RS22575 PF12592 Protein of unknown function (DUF3763) CHD54_RS22580 PF05762 VWA domain containing CoxE-like protein CHD54_RS22585 PF03590 Aspartate-ammonia ligase CHD54_RS22590 PF01037 Lrp/AsnC ligand binding domain CHD54_RS22595 PF00258 Flavodoxin CHD54_RS22600 PF13932 GidA associated domain CHD54_RS22600 PF01134 Glucose inhibited division protein A CHD54_RS22605 PF02527 rRNA small subunit methyltransferase G CHD54_RS22610 PF03899 ATP synthase I chain CHD54_RS22615 PF00119 ATP synthase A chain CHD54_RS22620 PF00137 ATP synthase subunit C CHD54_RS22625 PF00430 ATP synthase B/B' CF(0) CHD54_RS22630 PF00213 ATP synthase delta (OSCP) subunit CHD54_RS22635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHD54_RS22635 PF00306 ATP synthase alpha/beta chain, C terminal domain CHD54_RS22635 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHD54_RS22640 PF00231 ATP synthase CHD54_RS22645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHD54_RS22645 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHD54_RS22650 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CHD54_RS22650 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CHD54_RS22655 PF14602 Hexapeptide repeat of succinyl-transferase CHD54_RS22655 PF00132 Bacterial transferase hexapeptide (six repeats) CHD54_RS22655 PF12804 MobA-like NTP transferase domain CHD54_RS22660 PF01380 SIS domain CHD54_RS22665 PF00392 Bacterial regulatory proteins, gntR family CHD54_RS22665 PF07702 UTRA domain CHD54_RS22675 PF02378 Phosphotransferase system, EIIC CHD54_RS22680 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CHD54_RS22690 PF00480 ROK family CHD54_RS22695 PF00232 Glycosyl hydrolase family 1 CHD54_RS22700 PF12849 PBP superfamily domain CHD54_RS22705 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS22710 PF00528 Binding-protein-dependent transport system inner membrane component CHD54_RS22715 PF00005 ABC transporter CHD54_RS22720 PF01895 PhoU domain CHD54_RS22725 PF13419 Haloacid dehalogenase-like hydrolase CHD54_RS22730 PF00860 Permease family CHD54_RS22735 PF03358 NADPH-dependent FMN reductase CHD54_RS22755 PF10396 GTP-binding protein TrmE N-terminus CHD54_RS22755 PF01926 50S ribosome-binding GTPase CHD54_RS22755 PF12631 MnmE helical domain CHD54_RS22760 PF14849 YidC periplasmic domain CHD54_RS22760 PF02096 60Kd inner membrane protein CHD54_RS22765 PF01809 Putative membrane protein insertion efficiency factor CHD54_RS22770 PF00825 Ribonuclease P CHD54_RS22775 PF00468 Ribosomal protein L34 CHD54_RS22780 PF01051 Initiator Replication protein CHD54_RS22810 PF13614 AAA domain CHD54_RS22815 PF00239 Resolvase, N terminal domain CHD54_RS22815 PF02796 Helix-turn-helix domain of resolvase CHD54_RS22860 PF00816 H-NS histone family CHD54_RS22865 PF05321 Haemolysin expression modulating protein CHD54_RS22870 PF01751 Toprim domain CHD54_RS22870 PF01131 DNA topoisomerase CHD54_RS22930 PF00437 Type II/IV secretion system protein CHD54_RS22935 PF03743 Bacterial conjugation TrbI-like protein CHD54_RS22965 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CHD54_RS22985 PF02357 Transcription termination factor nusG CHD54_RS23040 PF05016 ParE toxin of type II toxin-antitoxin system, parDE