locus-tag class description RK54_RS00010 PF00152 tRNA synthetases class II (D, K and N) RK54_RS00010 PF01336 OB-fold nucleic acid binding domain RK54_RS00015 PF00293 NUDIX domain RK54_RS00025 PF01476 LysM domain RK54_RS00025 PF01551 Peptidase family M23 RK54_RS00035 PF00589 Phage integrase family RK54_RS00035 PF14659 Phage integrase, N-terminal SAM-like domain RK54_RS00035 PF13356 Arm DNA-binding domain RK54_RS00040 PF01022 Bacterial regulatory protein, arsR family RK54_RS00050 PF04198 Putative sugar-binding domain RK54_RS00055 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK54_RS00055 PF02378 Phosphotransferase system, EIIC RK54_RS00055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK54_RS00060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK54_RS00065 PF03611 PTS system sugar-specific permease component RK54_RS00070 PF02502 Ribose/Galactose Isomerase RK54_RS00075 PF08220 DeoR-like helix-turn-helix domain RK54_RS00075 PF00455 DeoR C terminal sensor domain RK54_RS00080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK54_RS00085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK54_RS00090 PF03611 PTS system sugar-specific permease component RK54_RS00095 PF00834 Ribulose-phosphate 3 epimerase family RK54_RS00105 PF01380 SIS domain RK54_RS00115 PF13505 Outer membrane protein beta-barrel domain RK54_RS00125 PF00419 Fimbrial protein RK54_RS00130 PF13954 PapC N-terminal domain RK54_RS00130 PF00577 Outer membrane usher protein RK54_RS00130 PF13953 PapC C-terminal domain RK54_RS00135 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS00135 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS00155 PF03824 High-affinity nickel-transport protein RK54_RS00160 PF02583 Metal-sensitive transcriptional repressor RK54_RS00165 PF03222 Tryptophan/tyrosine permease family RK54_RS00175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS00175 PF03466 LysR substrate binding domain RK54_RS00180 PF00108 Thiolase, N-terminal domain RK54_RS00180 PF02803 Thiolase, C-terminal domain RK54_RS00195 PF04962 KduI/IolB family RK54_RS00205 PF00083 Sugar (and other) transporter RK54_RS00210 PF01177 Asp/Glu/Hydantoin racemase RK54_RS00215 PF03466 LysR substrate binding domain RK54_RS00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS00220 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RK54_RS00220 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RK54_RS00225 PF00356 Bacterial regulatory proteins, lacI family RK54_RS00230 PF00356 Bacterial regulatory proteins, lacI family RK54_RS00245 PF00501 AMP-binding enzyme RK54_RS00245 PF01553 Acyltransferase RK54_RS00250 PF07690 Major Facilitator Superfamily RK54_RS00255 PF00248 Aldo/keto reductase family RK54_RS00260 PF06004 Bacterial protein of unknown function (DUF903) RK54_RS00265 PF03741 Integral membrane protein TerC family RK54_RS00270 PF02976 DNA mismatch repair enzyme MutH RK54_RS00275 PF00293 NUDIX domain RK54_RS00280 PF05524 PEP-utilising enzyme, N-terminal RK54_RS00280 PF00391 PEP-utilising enzyme, mobile domain RK54_RS00280 PF02896 PEP-utilising enzyme, TIM barrel domain RK54_RS00280 PF01590 GAF domain RK54_RS00285 PF01790 Prolipoprotein diacylglyceryl transferase RK54_RS00290 PF00303 Thymidylate synthase RK54_RS00300 PF07963 Prokaryotic N-terminal methylation motif RK54_RS00305 PF07963 Prokaryotic N-terminal methylation motif RK54_RS00310 PF10713 Protein of unknown function (DUF2509) RK54_RS00315 PF07963 Prokaryotic N-terminal methylation motif RK54_RS00315 PF12528 Type II secretion prepilin peptidase dependent protein C RK54_RS00320 PF17946 RecC C-terminal domain RK54_RS00325 PF00675 Insulinase (Peptidase family M16) RK54_RS00325 PF05193 Peptidase M16 inactive domain RK54_RS00325 PF16187 Middle or third domain of peptidase_M16 RK54_RS00330 PF13361 UvrD-like helicase C-terminal domain RK54_RS00330 PF12705 PD-(D/E)XK nuclease superfamily RK54_RS00330 PF00580 UvrD/REP helicase N-terminal domain RK54_RS00335 PF13538 UvrD-like helicase C-terminal domain RK54_RS00340 PF00583 Acetyltransferase (GNAT) family RK54_RS00340 PF00696 Amino acid kinase family RK54_RS00345 PF11741 AMIN domain RK54_RS00345 PF01520 N-acetylmuramoyl-L-alanine amidase RK54_RS00360 PF06725 3D domain RK54_RS00360 PF03562 MltA specific insert domain RK54_RS00365 PF00899 ThiF family RK54_RS00370 PF00892 EamA-like transporter family RK54_RS00375 PF02657 Fe-S metabolism associated domain RK54_RS00380 PF00266 Aminotransferase class-V RK54_RS00385 PF06004 Bacterial protein of unknown function (DUF903) RK54_RS00390 PF03466 LysR substrate binding domain RK54_RS00390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS00395 PF04241 Protein of unknown function (DUF423) RK54_RS00400 PF01728 FtsJ-like methyltransferase RK54_RS00400 PF18125 RlmM ferredoxin-like domain RK54_RS00405 PF08220 DeoR-like helix-turn-helix domain RK54_RS00405 PF00455 DeoR C terminal sensor domain RK54_RS00410 PF05025 RbsD / FucU transport protein family RK54_RS00415 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RK54_RS00415 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK54_RS00420 PF07882 L-fucose isomerase, second N-terminal domain RK54_RS00420 PF07881 L-fucose isomerase, first N-terminal domain RK54_RS00420 PF02952 L-fucose isomerase, C-terminal domain RK54_RS00425 PF07690 Major Facilitator Superfamily RK54_RS00430 PF00596 Class II Aldolase and Adducin N-terminal domain RK54_RS00435 PF00465 Iron-containing alcohol dehydrogenase RK54_RS00440 PF01367 5'-3' exonuclease, C-terminal SAM fold RK54_RS00440 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RK54_RS00450 PF03313 Serine dehydratase alpha chain RK54_RS00450 PF03315 Serine dehydratase beta chain RK54_RS00460 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases RK54_RS00460 PF03641 Possible lysine decarboxylase RK54_RS00460 PF11892 Domain of unknown function (DUF3412) RK54_RS00465 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RK54_RS00465 PF14489 QueF-like protein RK54_RS00470 PF07348 Syd protein (SUKH-2) RK54_RS00480 PF04287 tRNA pseudouridine synthase C RK54_RS00485 PF00849 RNA pseudouridylate synthase RK54_RS00490 PF00258 Flavodoxin RK54_RS00500 PF07690 Major Facilitator Superfamily RK54_RS00505 PF13378 Enolase C-terminal domain-like RK54_RS00505 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RK54_RS00510 PF13378 Enolase C-terminal domain-like RK54_RS00515 PF02595 Glycerate kinase family RK54_RS00520 PF00072 Response regulator receiver domain RK54_RS00520 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS00520 PF01627 Hpt domain RK54_RS00520 PF00672 HAMP domain RK54_RS00520 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RK54_RS00525 PF05958 tRNA (Uracil-5-)-methyltransferase RK54_RS00525 PF01938 TRAM domain RK54_RS00530 PF13291 ACT domain RK54_RS00530 PF02824 TGS domain RK54_RS00530 PF04607 Region found in RelA / SpoT proteins RK54_RS00535 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH RK54_RS00560 PF00419 Fimbrial protein RK54_RS00570 PF00419 Fimbrial protein RK54_RS00575 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS00575 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS00580 PF13953 PapC C-terminal domain RK54_RS00580 PF13954 PapC N-terminal domain RK54_RS00580 PF00577 Outer membrane usher protein RK54_RS00585 PF00419 Fimbrial protein RK54_RS00590 PF03819 MazG nucleotide pyrophosphohydrolase domain RK54_RS00595 PF06418 CTP synthase N-terminus RK54_RS00595 PF00117 Glutamine amidotransferase class-I RK54_RS00600 PF00113 Enolase, C-terminal TIM barrel domain RK54_RS00600 PF03952 Enolase, N-terminal domain RK54_RS00605 PF04055 Radical SAM superfamily RK54_RS00610 PF03099 Biotin/lipoate A/B protein ligase family RK54_RS00610 PF12706 Beta-lactamase superfamily domain RK54_RS00615 PF01242 6-pyruvoyl tetrahydropterin synthase RK54_RS00625 PF00258 Flavodoxin RK54_RS00625 PF00667 FAD binding domain RK54_RS00625 PF00175 Oxidoreductase NAD-binding domain RK54_RS00630 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RK54_RS00630 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RK54_RS00640 PF01507 Phosphoadenosine phosphosulfate reductase family RK54_RS00650 PF11047 Salmonella outer protein D RK54_RS00660 PF00271 Helicase conserved C-terminal domain RK54_RS00660 PF00270 DEAD/DEAH box helicase RK54_RS00660 PF18019 HD domain RK54_RS00665 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) RK54_RS00675 PF09344 CT1975-like protein RK54_RS00680 PF09704 CRISPR-associated protein (Cas_Cas5) RK54_RS00690 PF01867 CRISPR associated protein Cas1 RK54_RS00695 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) RK54_RS00700 PF04389 Peptidase family M28 RK54_RS00705 PF01507 Phosphoadenosine phosphosulfate reductase family RK54_RS00710 PF00009 Elongation factor Tu GTP binding domain RK54_RS00720 PF12084 Protein of unknown function (DUF3561) RK54_RS00725 PF04977 Septum formation initiator RK54_RS00730 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RK54_RS00735 PF02542 YgbB family RK54_RS00740 PF01142 tRNA pseudouridine synthase D (TruD) RK54_RS00745 PF01975 Survival protein SurE RK54_RS00755 PF01476 LysM domain RK54_RS00755 PF01551 Peptidase family M23 RK54_RS00760 PF04539 Sigma-70 region 3 RK54_RS00760 PF04545 Sigma-70, region 4 RK54_RS00760 PF04542 Sigma-70 region 2 RK54_RS00760 PF00140 Sigma-70 factor, region 1.2 RK54_RS00770 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RK54_RS00775 PF02441 Flavoprotein RK54_RS00780 PF01047 MarR family RK54_RS00785 PF00455 DeoR C terminal sensor domain RK54_RS00785 PF08220 DeoR-like helix-turn-helix domain RK54_RS00790 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RK54_RS00790 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RK54_RS00795 PF17042 Nucleotide-binding C-terminal domain RK54_RS00795 PF07005 Sugar-binding N-terminal domain RK54_RS00800 PF00596 Class II Aldolase and Adducin N-terminal domain RK54_RS00805 PF01261 Xylose isomerase-like TIM barrel RK54_RS00810 PF01370 NAD dependent epimerase/dehydratase family RK54_RS00815 PF02447 GntP family permease RK54_RS00820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS00820 PF03466 LysR substrate binding domain RK54_RS00825 PF07690 Major Facilitator Superfamily RK54_RS00835 PF05190 MutS family domain IV RK54_RS00835 PF05188 MutS domain II RK54_RS00835 PF00488 MutS domain V RK54_RS00835 PF05192 MutS domain III RK54_RS00835 PF01624 MutS domain I RK54_RS00845 PF00149 Calcineurin-like phosphoesterase RK54_RS00885 PF04741 InvH outer membrane lipoprotein RK54_RS00890 PF12833 Helix-turn-helix domain RK54_RS00895 PF03958 Bacterial type II/III secretion system short domain RK54_RS00895 PF00263 Bacterial type II and III secretion system protein RK54_RS00900 PF07201 HrpJ-like domain RK54_RS00905 PF00771 FHIPEP family RK54_RS00910 PF03519 Invasion protein B family RK54_RS00915 PF02874 ATP synthase alpha/beta family, beta-barrel domain RK54_RS00915 PF18269 T3SS EscN ATPase C-terminal domain RK54_RS00915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RK54_RS00920 PF02090 Salmonella surface presentation of antigen gene type M protein RK54_RS00925 PF02510 Surface presentation of antigens protein RK54_RS00930 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RK54_RS00935 PF00813 FliP family RK54_RS00940 PF01313 Bacterial export proteins, family 3 RK54_RS00945 PF01311 Bacterial export proteins, family 1 RK54_RS00950 PF01312 FlhB HrpN YscU SpaS Family RK54_RS00955 PF07720 Tetratricopeptide repeat RK54_RS00960 PF04888 Secretion system effector C (SseC) like family RK54_RS00960 PF16535 Type III cell invasion protein SipB RK54_RS00965 PF09599 Salmonella-Shigella invasin protein C (IpaC_SipC) RK54_RS00970 PF06511 Type III secretion systems tip complex components RK54_RS00975 PF09052 SipA N-terminal domain RK54_RS00980 PF00550 Phosphopantetheine attachment site RK54_RS00990 PF05932 Tir chaperone protein (CesT) family RK54_RS01000 PF01464 Transglycosylase SLT domain RK54_RS01005 PF00486 Transcriptional regulatory protein, C terminal RK54_RS01010 PF12833 Helix-turn-helix domain RK54_RS01015 PF09480 Type III secretion system protein PrgH-EprH (PrgH) RK54_RS01020 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF RK54_RS01030 PF01514 Secretory protein of YscJ/FliF family RK54_RS01035 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) RK54_RS01050 PF12833 Helix-turn-helix domain RK54_RS01065 PF03421 YopJ Serine/Threonine acetyltransferase RK54_RS01070 PF00950 ABC 3 transport family RK54_RS01075 PF00950 ABC 3 transport family RK54_RS01080 PF00005 ABC transporter RK54_RS01085 PF01297 Zinc-uptake complex component A periplasmic RK54_RS01090 PF11756 Nitrous oxide-stimulated promoter RK54_RS01095 PF00158 Sigma-54 interaction domain RK54_RS01095 PF02954 Bacterial regulatory protein, Fis family RK54_RS01095 PF01590 GAF domain RK54_RS01100 PF00586 AIR synthase related protein, N-terminal domain RK54_RS01100 PF02769 AIR synthase related protein, C-terminal domain RK54_RS01105 PF01924 Hydrogenase formation hypA family RK54_RS01110 PF01455 HupF/HypC family RK54_RS01115 PF02492 CobW/HypB/UreG, nucleotide-binding domain RK54_RS01120 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RK54_RS01130 PF11046 Transcriptional repressor of hyc and hyp operons RK54_RS01135 PF13247 4Fe-4S dicluster domain RK54_RS01140 PF00361 Proton-conducting membrane transporter RK54_RS01145 PF00146 NADH dehydrogenase RK54_RS01150 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RK54_RS01150 PF00374 Nickel-dependent hydrogenase RK54_RS01150 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RK54_RS01155 PF12838 4Fe-4S dicluster domain RK54_RS01160 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RK54_RS01165 PF07450 Formate hydrogenlyase maturation protein HycH RK54_RS01170 PF01750 Hydrogenase maturation protease RK54_RS01180 PF13247 4Fe-4S dicluster domain RK54_RS01180 PF12800 4Fe-4S binding domain RK54_RS01185 PF01300 Telomere recombination RK54_RS01185 PF07503 HypF finger RK54_RS01185 PF00708 Acylphosphatase RK54_RS01185 PF17788 HypF Kae1-like domain RK54_RS01190 PF18113 Rubredoxin binding C-terminal domain RK54_RS01190 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS01195 PF00753 Metallo-beta-lactamase superfamily RK54_RS01195 PF00258 Flavodoxin RK54_RS01195 PF00301 Rubredoxin RK54_RS01200 PF01590 GAF domain RK54_RS01200 PF00158 Sigma-54 interaction domain RK54_RS01205 PF01380 SIS domain RK54_RS01205 PF00571 CBS domain RK54_RS01210 PF08220 DeoR-like helix-turn-helix domain RK54_RS01210 PF00455 DeoR C terminal sensor domain RK54_RS01215 PF06923 Glucitol operon activator protein (GutM) RK54_RS01220 PF00106 short chain dehydrogenase RK54_RS01225 PF03829 PTS system glucitol/sorbitol-specific IIA component RK54_RS01230 PF03612 Sorbitol phosphotransferase enzyme II N-terminus RK54_RS01230 PF07663 Sorbitol phosphotransferase enzyme II C-terminus RK54_RS01235 PF03608 PTS system enzyme II sorbitol-specific factor RK54_RS01240 PF13406 Transglycosylase SLT domain RK54_RS01250 PF02464 Competence-damaged protein RK54_RS01255 PF00154 recA bacterial DNA recombination protein RK54_RS01260 PF02631 RecX family RK54_RS01270 PF01411 tRNA synthetases class II (A) RK54_RS01270 PF02272 DHHA1 domain RK54_RS01270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RK54_RS01275 PF02599 Global regulator protein family RK54_RS01310 PF13419 Haloacid dehalogenase-like hydrolase RK54_RS01315 PF09335 SNARE associated Golgi protein RK54_RS01320 PF04262 Glutamate-cysteine ligase RK54_RS01325 PF02664 S-Ribosylhomocysteinase (LuxS) RK54_RS01335 PF07690 Major Facilitator Superfamily RK54_RS01340 PF00529 HlyD membrane-fusion protein of T1SS RK54_RS01340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RK54_RS01345 PF01047 MarR family RK54_RS01350 PF07690 Major Facilitator Superfamily RK54_RS01355 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RK54_RS01360 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS01365 PF00571 CBS domain RK54_RS01365 PF00005 ABC transporter RK54_RS01375 PF00268 Ribonucleotide reductase, small chain RK54_RS01385 PF07972 NrdI Flavodoxin like RK54_RS01390 PF00462 Glutaredoxin RK54_RS01400 PF02627 Carboxymuconolactone decarboxylase family RK54_RS01405 PF00392 Bacterial regulatory proteins, gntR family RK54_RS01405 PF00155 Aminotransferase class I and II RK54_RS01410 PF05957 Bacterial protein of unknown function (DUF883) RK54_RS01415 PF09400 Protein of unknown function (DUF2002) RK54_RS01420 PF06610 L-alanine exporter RK54_RS01425 PF00816 H-NS histone family RK54_RS01435 PF00581 Rhodanese-like domain RK54_RS01435 PF11127 Protein of unknown function (DUF2892) RK54_RS01440 PF01022 Bacterial regulatory protein, arsR family RK54_RS01445 PF01679 Proteolipid membrane potential modulator RK54_RS01455 PF01476 LysM domain RK54_RS01455 PF04972 BON domain RK54_RS01460 PF07729 FCD domain RK54_RS01460 PF00392 Bacterial regulatory proteins, gntR family RK54_RS01465 PF00324 Amino acid permease RK54_RS01470 PF00202 Aminotransferase class-III RK54_RS01475 PF00171 Aldehyde dehydrogenase family RK54_RS01480 PF01266 FAD dependent oxidoreductase RK54_RS01485 PF08943 CsiD RK54_RS01490 PF01970 Tripartite tricarboxylate transporter TctA family RK54_RS01505 PF00072 Response regulator receiver domain RK54_RS01505 PF00486 Transcriptional regulatory protein, C terminal RK54_RS01510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS01510 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS01515 PF03824 High-affinity nickel-transport protein RK54_RS01530 PF04393 Protein of unknown function (DUF535) RK54_RS01540 PF00805 Pentapeptide repeats (8 copies) RK54_RS01550 PF07715 TonB-dependent Receptor Plug Domain RK54_RS01550 PF00593 TonB dependent receptor RK54_RS01555 PF00756 Putative esterase RK54_RS01565 PF00005 ABC transporter RK54_RS01565 PF00664 ABC transporter transmembrane region RK54_RS01570 PF06722 Protein of unknown function (DUF1205) RK54_RS01580 PF02796 Helix-turn-helix domain of resolvase RK54_RS01580 PF00239 Resolvase, N terminal domain RK54_RS01585 PF00669 Bacterial flagellin N-terminal helical region RK54_RS01585 PF08884 Flagellin D3 domain RK54_RS01585 PF00700 Bacterial flagellin C-terminal helical region RK54_RS01590 PF03614 Repressor of phase-1 flagellin RK54_RS01620 PF13356 Arm DNA-binding domain RK54_RS01620 PF00589 Phage integrase family RK54_RS01650 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK54_RS01650 PF00367 phosphotransferase system, EIIB RK54_RS01650 PF02378 Phosphotransferase system, EIIC RK54_RS01660 PF01380 SIS domain RK54_RS01665 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RK54_RS01675 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RK54_RS01675 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RK54_RS01680 PF03612 Sorbitol phosphotransferase enzyme II N-terminus RK54_RS01680 PF07663 Sorbitol phosphotransferase enzyme II C-terminus RK54_RS01690 PF03608 PTS system enzyme II sorbitol-specific factor RK54_RS01695 PF13693 Winged helix-turn-helix DNA-binding RK54_RS01710 PF00005 ABC transporter RK54_RS01750 PF00529 HlyD membrane-fusion protein of T1SS RK54_RS01750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RK54_RS01755 PF00005 ABC transporter RK54_RS01755 PF00664 ABC transporter transmembrane region RK54_RS01770 PF01668 SmpB protein RK54_RS01775 PF03364 Polyketide cyclase / dehydrase and lipid transport RK54_RS01780 PF03658 RnfH family Ubiquitin RK54_RS01785 PF04355 SmpA / OmlA family RK54_RS01790 PF02463 RecF/RecN/SMC N terminal domain RK54_RS01795 PF01513 ATP-NAD kinase RK54_RS01805 PF01025 GrpE RK54_RS01815 PF01595 Cyclin M transmembrane N-terminal domain RK54_RS01815 PF00571 CBS domain RK54_RS01815 PF03471 Transporter associated domain RK54_RS01820 PF01578 Cytochrome C assembly protein RK54_RS01830 PF02881 SRP54-type protein, helical bundle domain RK54_RS01830 PF02978 Signal peptide binding domain RK54_RS01830 PF00448 SRP54-type protein, GTPase domain RK54_RS01835 PF00886 Ribosomal protein S16 RK54_RS01840 PF01782 RimM N-terminal domain RK54_RS01840 PF05239 PRC-barrel domain RK54_RS01845 PF01746 tRNA (Guanine-1)-methyltransferase RK54_RS01850 PF01245 Ribosomal protein L19 RK54_RS01855 PF17152 Periplasmic sensor domain RK54_RS01855 PF00990 Diguanylate cyclase, GGDEF domain RK54_RS01860 PF13689 YfiR/HmsC-like RK54_RS01865 PF00793 DAHP synthetase I family RK54_RS01870 PF01817 Chorismate mutase type II RK54_RS01870 PF02153 Prephenate dehydrogenase RK54_RS01875 PF08450 SMP-30/Gluconolactonase/LRE-like region RK54_RS01880 PF00800 Prephenate dehydratase RK54_RS01880 PF01817 Chorismate mutase type II RK54_RS01890 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RK54_RS01895 PF13525 Outer membrane lipoprotein RK54_RS01900 PF00849 RNA pseudouridylate synthase RK54_RS01900 PF01479 S4 domain RK54_RS01905 PF02578 Multi-copper polyphenol oxidoreductase laccase RK54_RS01910 PF10431 C-terminal, D2-small domain, of ClpB protein RK54_RS01910 PF17871 AAA lid domain RK54_RS01910 PF07724 AAA domain (Cdc48 subfamily) RK54_RS01910 PF02861 Clp amino terminal domain, pathogenicity island component RK54_RS01910 PF00004 ATPase family associated with various cellular activities (AAA) RK54_RS01945 PF00083 Sugar (and other) transporter RK54_RS01950 PF10043 Predicted periplasmic lipoprotein (DUF2279) RK54_RS01955 PF13091 PLD-like domain RK54_RS01960 PF00583 Acetyltransferase (GNAT) family RK54_RS01960 PF13380 CoA binding domain RK54_RS01960 PF13607 Succinyl-CoA ligase like flavodoxin domain RK54_RS01965 PF03942 DTW domain RK54_RS01970 PF00085 Thioredoxin RK54_RS01975 PF00588 SpoU rRNA Methylase family RK54_RS01975 PF08032 RNA 2'-O ribose methyltransferase substrate binding RK54_RS01980 PF03167 Uracil DNA glycosylase superfamily RK54_RS01985 PF01228 Glycine radical RK54_RS01990 PF01810 LysE type translocator RK54_RS01995 PF03466 LysR substrate binding domain RK54_RS01995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS02000 PF00271 Helicase conserved C-terminal domain RK54_RS02000 PF00270 DEAD/DEAH box helicase RK54_RS02005 PF05175 Methyltransferase small domain RK54_RS02010 PF02910 Fumarate reductase flavoprotein C-term RK54_RS02010 PF00890 FAD binding domain RK54_RS02020 PF08281 Sigma-70, region 4 RK54_RS02020 PF04542 Sigma-70 region 2 RK54_RS02025 PF03872 Anti sigma-E protein RseA, N-terminal domain RK54_RS02025 PF03873 Anti sigma-E protein RseA, C-terminal domain RK54_RS02030 PF17188 MucB/RseB C-terminal domain RK54_RS02030 PF03888 MucB/RseB N-terminal domain RK54_RS02045 PF06421 GTP-binding protein LepA C-terminus RK54_RS02045 PF00679 Elongation factor G C-terminus RK54_RS02045 PF00009 Elongation factor Tu GTP binding domain RK54_RS02045 PF03144 Elongation factor Tu domain 2 RK54_RS02050 PF10502 Signal peptidase, peptidase S26 RK54_RS02060 PF00035 Double-stranded RNA binding motif RK54_RS02060 PF14622 Ribonuclease-III-like RK54_RS02065 PF01926 50S ribosome-binding GTPase RK54_RS02065 PF07650 KH domain RK54_RS02070 PF11967 Recombination protein O N terminal RK54_RS02070 PF02565 Recombination protein O C terminal RK54_RS02075 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RK54_RS02080 PF01648 4'-phosphopantetheinyl transferase superfamily RK54_RS02085 PF12838 4Fe-4S dicluster domain RK54_RS02090 PF03466 LysR substrate binding domain RK54_RS02090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS02095 PF07690 Major Facilitator Superfamily RK54_RS02100 PF02558 Ketopantoate reductase PanE/ApbA RK54_RS02100 PF08546 Ketopantoate reductase PanE/ApbA C terminal RK54_RS02105 PF01418 Helix-turn-helix domain, rpiR family RK54_RS02105 PF01380 SIS domain RK54_RS02110 PF01380 SIS domain RK54_RS02115 PF00367 phosphotransferase system, EIIB RK54_RS02115 PF02378 Phosphotransferase system, EIIC RK54_RS02125 PF14437 MafB19-like deaminase RK54_RS02130 PF01464 Transglycosylase SLT domain RK54_RS02130 PF00497 Bacterial extracellular solute-binding proteins, family 3 RK54_RS02140 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RK54_RS02140 PF02769 AIR synthase related protein, C-terminal domain RK54_RS02140 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RK54_RS02145 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS02145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS02150 PF13942 YfhG lipoprotein RK54_RS02155 PF00158 Sigma-54 interaction domain RK54_RS02155 PF00072 Response regulator receiver domain RK54_RS02160 PF00543 Nitrogen regulatory protein P-II RK54_RS02165 PF00854 POT family RK54_RS02170 PF01276 Orn/Lys/Arg decarboxylase, major domain RK54_RS02170 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RK54_RS02170 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RK54_RS02175 PF13520 Amino acid permease RK54_RS02180 PF18500 CadC C-terminal domain 1 RK54_RS02180 PF00486 Transcriptional regulatory protein, C terminal RK54_RS02185 PF00042 Globin RK54_RS02185 PF00175 Oxidoreductase NAD-binding domain RK54_RS02185 PF00970 Oxidoreductase FAD-binding domain RK54_RS02190 PF00464 Serine hydroxymethyltransferase RK54_RS02195 PF12832 MFS_1 like family RK54_RS02200 PF00874 PRD domain RK54_RS02210 PF03824 High-affinity nickel-transport protein RK54_RS02215 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RK54_RS02215 PF13187 4Fe-4S dicluster domain RK54_RS02215 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RK54_RS02220 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B RK54_RS02220 PF00175 Oxidoreductase NAD-binding domain RK54_RS02225 PF17179 4Fe-4S dicluster domain RK54_RS02230 PF12146 Serine aminopeptidase, S33 RK54_RS02235 PF00459 Inositol monophosphatase family RK54_RS02240 PF00588 SpoU rRNA Methylase family RK54_RS02245 PF02082 Transcriptional regulator RK54_RS02250 PF00266 Aminotransferase class-V RK54_RS02255 PF01592 NifU-like N terminal domain RK54_RS02260 PF01521 Iron-sulphur cluster biosynthesis RK54_RS02265 PF07743 HSCB C-terminal oligomerisation domain RK54_RS02270 PF00012 Hsp70 protein RK54_RS02275 PF00111 2Fe-2S iron-sulfur cluster binding domain RK54_RS02280 PF04384 Iron-sulphur cluster assembly RK54_RS02290 PF12404 Peptidase RK54_RS02290 PF00883 Cytosol aminopeptidase family, catalytic domain RK54_RS02300 PF07179 SseB protein N-terminal domain RK54_RS02300 PF14581 SseB protein C-terminal domain RK54_RS02315 PF00581 Rhodanese-like domain RK54_RS02320 PF01835 MG2 domain RK54_RS02320 PF07678 A-macroglobulin TED domain RK54_RS02320 PF17962 Bacterial macroglobulin domain 6 RK54_RS02320 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RK54_RS02320 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RK54_RS02320 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain RK54_RS02320 PF07703 Alpha-2-macroglobulin bait region domain RK54_RS02320 PF00207 Alpha-2-macroglobulin family RK54_RS02320 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RK54_RS02325 PF06832 Penicillin-Binding Protein C-terminus Family RK54_RS02325 PF00912 Transglycosylase RK54_RS02325 PF00905 Penicillin binding protein transpeptidase domain RK54_RS02330 PF01568 Molydopterin dinucleotide binding domain RK54_RS02330 PF00384 Molybdopterin oxidoreductase RK54_RS02330 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS02335 PF12800 4Fe-4S binding domain RK54_RS02335 PF13247 4Fe-4S dicluster domain RK54_RS02350 PF00334 Nucleoside diphosphate kinase RK54_RS02355 PF04055 Radical SAM superfamily RK54_RS02365 PF13464 Domain of unknown function (DUF4115) RK54_RS02370 PF04551 GcpE protein RK54_RS02375 PF13393 Histidyl-tRNA synthetase RK54_RS02375 PF03129 Anticodon binding domain RK54_RS02380 PF09976 Tetratricopeptide repeat-like domain RK54_RS02385 PF13360 PQQ-like domain RK54_RS02390 PF01926 50S ribosome-binding GTPase RK54_RS02390 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RK54_RS02395 PF07191 zinc-ribbons RK54_RS02400 PF02369 Bacterial Ig-like domain (group 1) RK54_RS02400 PF02368 Bacterial Ig-like domain (group 2) RK54_RS02400 PF01476 LysM domain RK54_RS02400 PF07979 Intimin C-type lectin domain RK54_RS02400 PF11924 Inverse autotransporter, beta-domain RK54_RS02430 PF03797 Autotransporter beta-domain RK54_RS02435 PF02601 Exonuclease VII, large subunit RK54_RS02435 PF13742 OB-fold nucleic acid binding domain RK54_RS02440 PF00571 CBS domain RK54_RS02440 PF00478 IMP dehydrogenase / GMP reductase domain RK54_RS02445 PF00117 Glutamine amidotransferase class-I RK54_RS02445 PF02540 NAD synthase RK54_RS02445 PF00958 GMP synthase C terminal domain RK54_RS02465 PF11119 Protein of unknown function (DUF2633) RK54_RS02475 PF00563 EAL domain RK54_RS02475 PF05231 MASE1 RK54_RS02480 PF02541 Ppx/GppA phosphatase family RK54_RS02485 PF17941 Polyphosphate kinase C-terminal domain 1 RK54_RS02485 PF02503 Polyphosphate kinase middle domain RK54_RS02485 PF13090 Polyphosphate kinase C-terminal domain 2 RK54_RS02485 PF13089 Polyphosphate kinase N-terminal domain RK54_RS02490 PF00551 Formyl transferase RK54_RS02495 PF00586 AIR synthase related protein, N-terminal domain RK54_RS02495 PF02769 AIR synthase related protein, C-terminal domain RK54_RS02510 PF00860 Permease family RK54_RS02515 PF00308 Bacterial dnaA protein RK54_RS02520 PF03960 ArsC family RK54_RS02525 PF01435 Peptidase family M48 RK54_RS02530 PF01594 AI-2E family transporter RK54_RS02535 PF02595 Glycerate kinase family RK54_RS02540 PF00578 AhpC/TSA family RK54_RS02545 PF01842 ACT domain RK54_RS02550 PF00701 Dihydrodipicolinate synthetase family RK54_RS02555 PF06804 NlpB/DapX lipoprotein RK54_RS02560 PF01259 SAICAR synthetase RK54_RS02565 PF04228 Putative neutral zinc metallopeptidase RK54_RS02570 PF13718 GNAT acetyltransferase 2 RK54_RS02570 PF08351 Domain of unknown function (DUF1726) RK54_RS02570 PF05127 Helicase RK54_RS02570 PF17176 tRNA-binding domain RK54_RS02575 PF13980 Uncharacterised protein family (UPF0370) RK54_RS02580 PF07687 Peptidase dimerisation domain RK54_RS02580 PF01546 Peptidase family M20/M25/M40 RK54_RS02585 PF03960 ArsC family RK54_RS02595 PF00873 AcrB/AcrD/AcrF family RK54_RS02600 PF07730 Histidine kinase RK54_RS02600 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RK54_RS02600 PF00672 HAMP domain RK54_RS02600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS02610 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS02610 PF13247 4Fe-4S dicluster domain RK54_RS02610 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RK54_RS02620 PF00144 Beta-lactamase RK54_RS02625 PF00293 NUDIX domain RK54_RS02630 PF06674 Protein of unknown function (DUF1176) RK54_RS02640 PF02779 Transketolase, pyrimidine binding domain RK54_RS02640 PF00456 Transketolase, thiamine diphosphate binding domain RK54_RS02640 PF02780 Transketolase, C-terminal domain RK54_RS02645 PF00923 Transaldolase/Fructose-6-phosphate aldolase RK54_RS02655 PF00390 Malic enzyme, N-terminal domain RK54_RS02655 PF01515 Phosphate acetyl/butaryl transferase RK54_RS02655 PF03949 Malic enzyme, NAD binding domain RK54_RS02660 PF00936 BMC domain RK54_RS02665 PF10662 Ethanolamine utilisation - propanediol utilisation RK54_RS02670 PF06249 Ethanolamine utilisation protein EutQ RK54_RS02675 PF01923 Cobalamin adenosyltransferase RK54_RS02680 PF01515 Phosphate acetyl/butaryl transferase RK54_RS02685 PF00936 BMC domain RK54_RS02690 PF03319 Ethanolamine utilisation protein EutN/carboxysome RK54_RS02695 PF00171 Aldehyde dehydrogenase family RK54_RS02705 PF00465 Iron-containing alcohol dehydrogenase RK54_RS02710 PF04346 Ethanolamine utilisation protein, EutH RK54_RS02715 PF06277 Ethanolamine utilisation protein EutA RK54_RS02720 PF06751 Ethanolamine ammonia lyase large subunit (EutB) RK54_RS02725 PF05985 Ethanolamine ammonia-lyase light chain (EutC) RK54_RS02730 PF00936 BMC domain RK54_RS02735 PF16365 Ethanolamine utilization protein EutK C-terminus RK54_RS02735 PF00936 BMC domain RK54_RS02740 PF12833 Helix-turn-helix domain RK54_RS02750 PF01218 Coproporphyrinogen III oxidase RK54_RS02755 PF01520 N-acetylmuramoyl-L-alanine amidase RK54_RS02760 PF00583 Acetyltransferase (GNAT) family RK54_RS02765 PF11143 Protein of unknown function (DUF2919) RK54_RS02770 PF06572 Protein of unknown function (DUF1131) RK54_RS02775 PF04261 Dyp-type peroxidase family RK54_RS02790 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS02795 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS02800 PF00005 ABC transporter RK54_RS02805 PF00291 Pyridoxal-phosphate dependent enzyme RK54_RS02815 PF17263 Family of unknown function (DUF5329) RK54_RS02820 PF00117 Glutamine amidotransferase class-I RK54_RS02825 PF00392 Bacterial regulatory proteins, gntR family RK54_RS02825 PF00155 Aminotransferase class I and II RK54_RS02830 PF08543 Phosphomethylpyrimidine kinase RK54_RS02840 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK54_RS02845 PF02896 PEP-utilising enzyme, TIM barrel domain RK54_RS02845 PF00391 PEP-utilising enzyme, mobile domain RK54_RS02845 PF05524 PEP-utilising enzyme, N-terminal RK54_RS02850 PF00381 PTS HPr component phosphorylation site RK54_RS02855 PF00291 Pyridoxal-phosphate dependent enzyme RK54_RS02870 PF04354 ZipA, C-terminal FtsZ-binding domain RK54_RS02875 PF01653 NAD-dependent DNA ligase adenylation domain RK54_RS02875 PF12826 Helix-hairpin-helix motif RK54_RS02875 PF00533 BRCA1 C Terminus (BRCT) domain RK54_RS02875 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RK54_RS02875 PF03120 NAD-dependent DNA ligase OB-fold domain RK54_RS02880 PF12843 Putative quorum-sensing-regulated virulence factor RK54_RS02885 PF13593 SBF-like CPA transporter family (DUF4137) RK54_RS02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS02890 PF03466 LysR substrate binding domain RK54_RS02895 PF03502 Nucleoside-specific channel-forming protein, Tsx RK54_RS02900 PF01048 Phosphorylase superfamily RK54_RS02905 PF03825 Nucleoside H+ symporter RK54_RS02915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS02915 PF03466 LysR substrate binding domain RK54_RS02940 PF00749 tRNA synthetases class I (E and Q), catalytic domain RK54_RS02945 PF07037 Putative transcription regulator (DUF1323) RK54_RS02950 PF07037 Putative transcription regulator (DUF1323) RK54_RS02970 PF00563 EAL domain RK54_RS02970 PF05231 MASE1 RK54_RS02975 PF07670 Nucleoside recognition RK54_RS02975 PF07662 Na+ dependent nucleoside transporter C-terminus RK54_RS02975 PF01773 Na+ dependent nucleoside transporter N-terminus RK54_RS02980 PF01566 Natural resistance-associated macrophage protein RK54_RS02985 PF10697 Protein of unknown function (DUF2502) RK54_RS02990 PF00248 Aldo/keto reductase family RK54_RS02995 PF00205 Thiamine pyrophosphate enzyme, central domain RK54_RS02995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK54_RS02995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK54_RS03000 PF00654 Voltage gated chloride channel RK54_RS03005 PF02685 Glucokinase RK54_RS03015 PF00155 Aminotransferase class I and II RK54_RS03025 PF01797 Transposase IS200 like RK54_RS03035 PF03279 Bacterial lipid A biosynthesis acyltransferase RK54_RS03040 PF10810 Protein of unknown function (DUF2545) RK54_RS03045 PF07690 Major Facilitator Superfamily RK54_RS03060 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS03060 PF00672 HAMP domain RK54_RS03065 PF02954 Bacterial regulatory protein, Fis family RK54_RS03065 PF14532 Sigma-54 interaction domain RK54_RS03065 PF00072 Response regulator receiver domain RK54_RS03070 PF01278 Omptin family RK54_RS03130 PF13356 Arm DNA-binding domain RK54_RS03130 PF14659 Phage integrase, N-terminal SAM-like domain RK54_RS03130 PF00589 Phage integrase family RK54_RS03140 PF01226 Formate/nitrite transporter RK54_RS03145 PF04333 MlaA lipoprotein RK54_RS03150 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) RK54_RS03155 PF04175 Protein of unknown function (DUF406) RK54_RS03160 PF02803 Thiolase, C-terminal domain RK54_RS03160 PF00108 Thiolase, N-terminal domain RK54_RS03165 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RK54_RS03165 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RK54_RS03165 PF00378 Enoyl-CoA hydratase/isomerase RK54_RS03170 PF00300 Histidine phosphatase superfamily (branch 1) RK54_RS03175 PF01713 Smr domain RK54_RS03180 PF05175 Methyltransferase small domain RK54_RS03185 PF01264 Chorismate synthase RK54_RS03190 PF03411 Penicillin-insensitive murein endopeptidase RK54_RS03195 PF01925 Sulfite exporter TauE/SafE RK54_RS03200 PF04315 Elongation factor P hydroxylase RK54_RS03205 PF08891 YfcL protein RK54_RS03210 PF01266 FAD dependent oxidoreductase RK54_RS03210 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RK54_RS03215 PF02801 Beta-ketoacyl synthase, C-terminal domain RK54_RS03215 PF00109 Beta-ketoacyl synthase, N-terminal domain RK54_RS03220 PF02517 CPBP intramembrane metalloprotease RK54_RS03235 PF13693 Winged helix-turn-helix DNA-binding RK54_RS03245 PF07690 Major Facilitator Superfamily RK54_RS03255 PF11890 Domain of unknown function (DUF3410) RK54_RS03255 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK54_RS03255 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK54_RS03260 PF01118 Semialdehyde dehydrogenase, NAD binding domain RK54_RS03260 PF02774 Semialdehyde dehydrogenase, dimerisation domain RK54_RS03265 PF01416 tRNA pseudouridine synthase RK54_RS03270 PF09335 SNARE associated Golgi protein RK54_RS03275 PF01039 Carboxyl transferase domain RK54_RS03275 PF17848 Acetyl-coA carboxylase zinc finger domain RK54_RS03280 PF02875 Mur ligase family, glutamate ligase domain RK54_RS03280 PF08245 Mur ligase middle domain RK54_RS03285 PF05036 Sporulation related domain RK54_RS03290 PF02674 Colicin V production protein RK54_RS03295 PF00156 Phosphoribosyl transferase domain RK54_RS03300 PF00158 Sigma-54 interaction domain RK54_RS03300 PF13426 PAS domain RK54_RS03300 PF02954 Bacterial regulatory protein, Fis family RK54_RS03305 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RK54_RS03305 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RK54_RS03310 PF13520 Amino acid permease RK54_RS03315 PF01168 Alanine racemase, N-terminal domain RK54_RS03320 PF00324 Amino acid permease RK54_RS03325 PF02441 Flavoprotein RK54_RS03335 PF00497 Bacterial extracellular solute-binding proteins, family 3 RK54_RS03340 PF00497 Bacterial extracellular solute-binding proteins, family 3 RK54_RS03345 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS03350 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS03355 PF00005 ABC transporter RK54_RS03360 PF08338 Domain of unknown function (DUF1731) RK54_RS03360 PF01370 NAD dependent epimerase/dehydratase family RK54_RS03365 PF02798 Glutathione S-transferase, N-terminal domain RK54_RS03365 PF00043 Glutathione S-transferase, C-terminal domain RK54_RS03370 PF02798 Glutathione S-transferase, N-terminal domain RK54_RS03370 PF14834 Glutathione S-transferase, C-terminal domain RK54_RS03375 PF12850 Calcineurin-like phosphoesterase superfamily domain RK54_RS03380 PF00293 NUDIX domain RK54_RS03385 PF00356 Bacterial regulatory proteins, lacI family RK54_RS03395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK54_RS03405 PF03611 PTS system sugar-specific permease component RK54_RS03410 PF00456 Transketolase, thiamine diphosphate binding domain RK54_RS03415 PF02780 Transketolase, C-terminal domain RK54_RS03415 PF02779 Transketolase, pyrimidine binding domain RK54_RS03415 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RK54_RS03420 PF03606 C4-dicarboxylate anaerobic carrier RK54_RS03425 PF01515 Phosphate acetyl/butaryl transferase RK54_RS03425 PF07085 DRTGG domain RK54_RS03430 PF00871 Acetokinase family RK54_RS03435 PF04217 Protein of unknown function, DUF412 RK54_RS03440 PF03887 YfbU domain RK54_RS03445 PF13419 Haloacid dehalogenase-like hydrolase RK54_RS03450 PF02080 TrkA-C domain RK54_RS03450 PF03600 Citrate transporter RK54_RS03460 PF00155 Aminotransferase class I and II RK54_RS03470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS03470 PF03466 LysR substrate binding domain RK54_RS03480 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RK54_RS03485 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RK54_RS03490 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RK54_RS03490 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RK54_RS03500 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RK54_RS03500 PF10531 SLBB domain RK54_RS03500 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RK54_RS03505 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RK54_RS03505 PF01568 Molydopterin dinucleotide binding domain RK54_RS03505 PF00384 Molybdopterin oxidoreductase RK54_RS03505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS03510 PF00146 NADH dehydrogenase RK54_RS03515 PF12838 4Fe-4S dicluster domain RK54_RS03520 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RK54_RS03525 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RK54_RS03530 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RK54_RS03530 PF00361 Proton-conducting membrane transporter RK54_RS03535 PF00361 Proton-conducting membrane transporter RK54_RS03540 PF00361 Proton-conducting membrane transporter RK54_RS03545 PF01584 CheW-like domain RK54_RS03545 PF00072 Response regulator receiver domain RK54_RS03550 PF12706 Beta-lactamase superfamily domain RK54_RS03555 PF13673 Acetyltransferase (GNAT) domain RK54_RS03560 PF05957 Bacterial protein of unknown function (DUF883) RK54_RS03565 PF00425 chorismate binding enzyme RK54_RS03570 PF16582 Middle domain of thiamine pyrophosphate RK54_RS03570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK54_RS03570 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK54_RS03575 PF12697 Alpha/beta hydrolase family RK54_RS03580 PF00378 Enoyl-CoA hydratase/isomerase RK54_RS03585 PF13378 Enolase C-terminal domain-like RK54_RS03590 PF00501 AMP-binding enzyme RK54_RS03590 PF13193 AMP-binding enzyme C-terminal domain RK54_RS03605 PF00892 EamA-like transporter family RK54_RS03610 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase RK54_RS03615 PF01522 Polysaccharide deacetylase RK54_RS03620 PF00551 Formyl transferase RK54_RS03620 PF02911 Formyl transferase, C-terminal domain RK54_RS03620 PF01370 NAD dependent epimerase/dehydratase family RK54_RS03625 PF00535 Glycosyl transferase family 2 RK54_RS03630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RK54_RS03635 PF00300 Histidine phosphatase superfamily (branch 1) RK54_RS03640 PF00293 NUDIX domain RK54_RS03645 PF07437 YfaZ precursor RK54_RS03650 PF00994 Probable molybdopterin binding domain RK54_RS03655 PF01614 Bacterial transcriptional regulator RK54_RS03655 PF09339 IclR helix-turn-helix domain RK54_RS03660 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RK54_RS03660 PF13378 Enolase C-terminal domain-like RK54_RS03665 PF07690 Major Facilitator Superfamily RK54_RS03670 PF03328 HpcH/HpaI aldolase/citrate lyase family RK54_RS03675 PF00994 Probable molybdopterin binding domain RK54_RS03690 PF02754 Cysteine-rich domain RK54_RS03690 PF13183 4Fe-4S dicluster domain RK54_RS03695 PF00890 FAD binding domain RK54_RS03700 PF01266 FAD dependent oxidoreductase RK54_RS03700 PF04324 BFD-like [2Fe-2S] binding domain RK54_RS03705 PF07690 Major Facilitator Superfamily RK54_RS03710 PF03009 Glycerophosphoryl diester phosphodiesterase family RK54_RS03715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS03715 PF03466 LysR substrate binding domain RK54_RS03720 PF07690 Major Facilitator Superfamily RK54_RS03725 PF00111 2Fe-2S iron-sulfur cluster binding domain RK54_RS03730 PF00268 Ribonucleotide reductase, small chain RK54_RS03735 PF00317 Ribonucleotide reductase, all-alpha domain RK54_RS03735 PF02867 Ribonucleotide reductase, barrel domain RK54_RS03735 PF03477 ATP cone domain RK54_RS03750 PF07690 Major Facilitator Superfamily RK54_RS03755 PF13378 Enolase C-terminal domain-like RK54_RS03755 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RK54_RS03765 PF00521 DNA gyrase/topoisomerase IV, subunit A RK54_RS03765 PF03989 DNA gyrase C-terminal domain, beta-propeller RK54_RS03770 PF00072 Response regulator receiver domain RK54_RS03770 PF09456 RcsC Alpha-Beta-Loop (ABL) RK54_RS03770 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS03770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS03775 PF00072 Response regulator receiver domain RK54_RS03775 PF00196 Bacterial regulatory proteins, luxR family RK54_RS03780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS03780 PF16359 RcsD-ABL domain RK54_RS03780 PF01627 Hpt domain RK54_RS03790 PF00267 Gram-negative porin RK54_RS03795 PF02424 ApbE family RK54_RS03800 PF02805 Metal binding domain of Ada RK54_RS03800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RK54_RS03800 PF12833 Helix-turn-helix domain RK54_RS03800 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RK54_RS03805 PF13532 2OG-Fe(II) oxygenase superfamily RK54_RS03810 PF00005 ABC transporter RK54_RS03815 PF03974 Ecotin RK54_RS03820 PF12800 4Fe-4S binding domain RK54_RS03820 PF13187 4Fe-4S dicluster domain RK54_RS03820 PF00037 4Fe-4S binding domain RK54_RS03825 PF03927 NapD protein RK54_RS03830 PF01568 Molydopterin dinucleotide binding domain RK54_RS03830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS03830 PF00384 Molybdopterin oxidoreductase RK54_RS03835 PF12800 4Fe-4S binding domain RK54_RS03835 PF12838 4Fe-4S dicluster domain RK54_RS03840 PF13237 4Fe-4S dicluster domain RK54_RS03840 PF12801 4Fe-4S binding domain RK54_RS03850 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) RK54_RS03855 PF03264 NapC/NirT cytochrome c family, N-terminal region RK54_RS03865 PF03379 CcmB protein RK54_RS03870 PF01578 Cytochrome C assembly protein RK54_RS03875 PF04995 Heme exporter protein D (CcmD) RK54_RS03880 PF03100 CcmE RK54_RS03885 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RK54_RS03885 PF01578 Cytochrome C assembly protein RK54_RS03890 PF08534 Redoxin RK54_RS03895 PF03918 Cytochrome C biogenesis protein RK54_RS03900 PF00196 Bacterial regulatory proteins, luxR family RK54_RS03900 PF00072 Response regulator receiver domain RK54_RS03920 PF03335 Phage tail fibre repeat RK54_RS03920 PF08400 Prophage tail fibre N-terminal RK54_RS03920 PF07484 Phage Tail Collar Domain RK54_RS03930 PF14496 C-terminal novel E3 ligase, LRR-interacting RK54_RS03930 PF12468 Type III secretion system leucine rich repeat protein RK54_RS03940 PF06147 Protein of unknown function (DUF968) RK54_RS03945 PF06530 Phage antitermination protein Q RK54_RS03980 PF02413 Caudovirales tail fibre assembly protein, lambda gpK RK54_RS03995 PF06183 DinI-like family RK54_RS04000 PF00717 Peptidase S24-like RK54_RS04010 PF00884 Sulfatase RK54_RS04010 PF11893 Domain of unknown function (DUF3413) RK54_RS04015 PF07208 Protein of unknown function (DUF1414) RK54_RS04020 PF04245 37-kD nucleoid-associated bacterial protein RK54_RS04030 PF01386 Ribosomal L25p family RK54_RS04035 PF04851 Type III restriction enzyme, res subunit RK54_RS04035 PF00271 Helicase conserved C-terminal domain RK54_RS04040 PF00849 RNA pseudouridylate synthase RK54_RS04040 PF01479 S4 domain RK54_RS04045 PF07690 Major Facilitator Superfamily RK54_RS04050 PF13989 YejG-like protein RK54_RS04055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK54_RS04055 PF00005 ABC transporter RK54_RS04060 PF12911 N-terminal TM domain of oligopeptide transport permease C RK54_RS04060 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS04065 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS04070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK54_RS04075 PF12792 CSS motif domain associated with EAL RK54_RS04075 PF00563 EAL domain RK54_RS04085 PF00877 NlpC/P60 family RK54_RS04095 PF01569 PAP2 superfamily RK54_RS04100 PF02492 CobW/HypB/UreG, nucleotide-binding domain RK54_RS04100 PF07683 Cobalamin synthesis protein cobW C-terminal domain RK54_RS04105 PF08207 Elongation factor P (EF-P) KOW-like domain RK54_RS04105 PF09285 Elongation factor P, C-terminal RK54_RS04105 PF01132 Elongation factor P (EF-P) OB domain RK54_RS04110 PF03692 Putative zinc- or iron-chelating domain RK54_RS04125 PF07690 Major Facilitator Superfamily RK54_RS04130 PF00381 PTS HPr component phosphorylation site RK54_RS04130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK54_RS04135 PF00294 pfkB family carbohydrate kinase RK54_RS04140 PF02378 Phosphotransferase system, EIIC RK54_RS04140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK54_RS04145 PF01261 Xylose isomerase-like TIM barrel RK54_RS04150 PF03601 Conserved hypothetical protein 698 RK54_RS04155 PF03466 LysR substrate binding domain RK54_RS04155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS04160 PF00324 Amino acid permease RK54_RS04170 PF07715 TonB-dependent Receptor Plug Domain RK54_RS04170 PF00593 TonB dependent receptor RK54_RS04175 PF07690 Major Facilitator Superfamily RK54_RS04180 PF18429 Domain of unknown function (DUF5609) RK54_RS04185 PF03315 Serine dehydratase beta chain RK54_RS04185 PF03313 Serine dehydratase alpha chain RK54_RS04195 PF00756 Putative esterase RK54_RS04205 PF01227 GTP cyclohydrolase I RK54_RS04210 PF04235 Protein of unknown function (DUF418) RK54_RS04215 PF00356 Bacterial regulatory proteins, lacI family RK54_RS04220 PF13407 Periplasmic binding protein domain RK54_RS04225 PF00005 ABC transporter RK54_RS04230 PF02653 Branched-chain amino acid transport system / permease component RK54_RS04235 PF01180 Dihydroorotate dehydrogenase RK54_RS04240 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS04240 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RK54_RS04245 PF10808 Protein of unknown function (DUF2542) RK54_RS04250 PF02698 DUF218 domain RK54_RS04255 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RK54_RS04255 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region RK54_RS04260 PF04172 LrgB-like family RK54_RS04265 PF03788 LrgA family RK54_RS04270 PF03466 LysR substrate binding domain RK54_RS04270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS04275 PF07690 Major Facilitator Superfamily RK54_RS04280 PF07883 Cupin domain RK54_RS04285 PF01557 Fumarylacetoacetate (FAA) hydrolase family RK54_RS04290 PF02798 Glutathione S-transferase, N-terminal domain RK54_RS04290 PF14497 Glutathione S-transferase, C-terminal domain RK54_RS04295 PF01494 FAD binding domain RK54_RS04300 PF01207 Dihydrouridine synthase (Dus) RK54_RS04310 PF02321 Outer membrane efflux protein RK54_RS04320 PF09335 SNARE associated Golgi protein RK54_RS04325 PF04893 Yip1 domain RK54_RS04335 PF00768 D-alanyl-D-alanine carboxypeptidase RK54_RS04340 PF01565 FAD binding domain RK54_RS04340 PF09330 D-lactate dehydrogenase, membrane binding RK54_RS04345 PF01915 Glycosyl hydrolase family 3 C-terminal domain RK54_RS04345 PF00933 Glycosyl hydrolase family 3 N terminal domain RK54_RS04345 PF14310 Fibronectin type III-like domain RK54_RS04350 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RK54_RS04355 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS04360 PF00005 ABC transporter RK54_RS04365 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS04375 PF13411 MerR HTH family regulatory protein RK54_RS04380 PF07694 5TMR of 5TMR-LYT RK54_RS04380 PF06580 Histidine kinase RK54_RS04385 PF00072 Response regulator receiver domain RK54_RS04385 PF04397 LytTr DNA-binding domain RK54_RS04390 PF07308 Protein of unknown function (DUF1456) RK54_RS04400 PF06998 Protein of unknown function (DUF1307) RK54_RS04405 PF09334 tRNA synthetases class I (M) RK54_RS04405 PF01588 Putative tRNA binding domain RK54_RS04410 PF10609 NUBPL iron-transfer P-loop NTPase RK54_RS04425 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS04425 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS04430 PF00577 Outer membrane usher protein RK54_RS04430 PF13954 PapC N-terminal domain RK54_RS04430 PF13953 PapC C-terminal domain RK54_RS04435 PF00419 Fimbrial protein RK54_RS04440 PF11776 Nickel/cobalt transporter regulator RK54_RS04445 PF02110 Hydroxyethylthiazole kinase family RK54_RS04450 PF08543 Phosphomethylpyrimidine kinase RK54_RS04455 PF07702 UTRA domain RK54_RS04455 PF00392 Bacterial regulatory proteins, gntR family RK54_RS04460 PF00294 pfkB family carbohydrate kinase RK54_RS04465 PF03747 ADP-ribosylglycohydrolase RK54_RS04470 PF03825 Nucleoside H+ symporter RK54_RS04475 PF01791 DeoC/LacD family aldolase RK54_RS04480 PF00781 Diacylglycerol kinase catalytic domain RK54_RS04490 PF05932 Tir chaperone protein (CesT) family RK54_RS04500 PF01136 Peptidase family U32 RK54_RS04500 PF16325 Peptidase family U32 C-terminal domain RK54_RS04525 PF00486 Transcriptional regulatory protein, C terminal RK54_RS04525 PF00072 Response regulator receiver domain RK54_RS04530 PF00672 HAMP domain RK54_RS04530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS04530 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS04535 PF07690 Major Facilitator Superfamily RK54_RS04540 PF00873 AcrB/AcrD/AcrF family RK54_RS04545 PF00873 AcrB/AcrD/AcrF family RK54_RS04550 PF13533 Biotin-lipoyl like RK54_RS04560 PF00012 Hsp70 protein RK54_RS04570 PF00730 HhH-GPD superfamily base excision DNA repair protein RK54_RS04570 PF06029 AlkA N-terminal domain RK54_RS04575 PF13426 PAS domain RK54_RS04575 PF05231 MASE1 RK54_RS04575 PF08447 PAS fold RK54_RS04575 PF08448 PAS fold RK54_RS04575 PF00990 Diguanylate cyclase, GGDEF domain RK54_RS04575 PF00563 EAL domain RK54_RS04580 PF00485 Phosphoribulokinase / Uridine kinase family RK54_RS04585 PF00692 dUTPase RK54_RS04590 PF05170 AsmA family RK54_RS04595 PF00571 CBS domain RK54_RS04595 PF03741 Integral membrane protein TerC family RK54_RS04595 PF03471 Transporter associated domain RK54_RS04605 PF02563 Polysaccharide biosynthesis/export protein RK54_RS04605 PF18412 Outer-membrane lipoprotein Wza C-terminal domain RK54_RS04605 PF10531 SLBB domain RK54_RS04610 PF01451 Low molecular weight phosphotyrosine protein phosphatase RK54_RS04615 PF13807 G-rich domain on putative tyrosine kinase RK54_RS04615 PF02706 Chain length determinant protein RK54_RS04615 PF13614 AAA domain RK54_RS04620 PF00535 Glycosyl transferase family 2 RK54_RS04625 PF00132 Bacterial transferase hexapeptide (six repeats) RK54_RS04630 PF13439 Glycosyltransferase Family 4 RK54_RS04630 PF00534 Glycosyl transferases group 1 RK54_RS04640 PF00535 Glycosyl transferase family 2 RK54_RS04645 PF00132 Bacterial transferase hexapeptide (six repeats) RK54_RS04650 PF16363 GDP-mannose 4,6 dehydratase RK54_RS04655 PF01370 NAD dependent epimerase/dehydratase family RK54_RS04660 PF00293 NUDIX domain RK54_RS04665 PF00534 Glycosyl transferases group 1 RK54_RS04665 PF13579 Glycosyl transferase 4-like domain RK54_RS04670 PF01050 Mannose-6-phosphate isomerase RK54_RS04670 PF00483 Nucleotidyl transferase RK54_RS04675 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RK54_RS04675 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RK54_RS04675 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RK54_RS04675 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RK54_RS04680 PF02397 Bacterial sugar transferase RK54_RS04690 PF04230 Polysaccharide pyruvyl transferase RK54_RS04695 PF00534 Glycosyl transferases group 1 RK54_RS04695 PF13439 Glycosyltransferase Family 4 RK54_RS04705 PF00483 Nucleotidyl transferase RK54_RS04710 PF16363 GDP-mannose 4,6 dehydratase RK54_RS04715 PF04321 RmlD substrate binding domain RK54_RS04720 PF00483 Nucleotidyl transferase RK54_RS04725 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RK54_RS04730 PF00111 2Fe-2S iron-sulfur cluster binding domain RK54_RS04730 PF00175 Oxidoreductase NAD-binding domain RK54_RS04730 PF00970 Oxidoreductase FAD-binding domain RK54_RS04735 PF00483 Nucleotidyl transferase RK54_RS04740 PF16363 GDP-mannose 4,6 dehydratase RK54_RS04745 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RK54_RS04750 PF01370 NAD dependent epimerase/dehydratase family RK54_RS04760 PF00535 Glycosyl transferase family 2 RK54_RS04765 PF13439 Glycosyltransferase Family 4 RK54_RS04765 PF00534 Glycosyl transferases group 1 RK54_RS04770 PF00535 Glycosyl transferase family 2 RK54_RS04775 PF01050 Mannose-6-phosphate isomerase RK54_RS04775 PF00483 Nucleotidyl transferase RK54_RS04780 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RK54_RS04780 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RK54_RS04780 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RK54_RS04780 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RK54_RS04785 PF02397 Bacterial sugar transferase RK54_RS04790 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RK54_RS04790 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RK54_RS04800 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RK54_RS04800 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RK54_RS04805 PF02706 Chain length determinant protein RK54_RS04810 PF01502 Phosphoribosyl-AMP cyclohydrolase RK54_RS04810 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RK54_RS04815 PF00977 Histidine biosynthesis protein RK54_RS04820 PF00977 Histidine biosynthesis protein RK54_RS04825 PF00117 Glutamine amidotransferase class-I RK54_RS04830 PF00475 Imidazoleglycerol-phosphate dehydratase RK54_RS04835 PF00155 Aminotransferase class I and II RK54_RS04840 PF00815 Histidinol dehydrogenase RK54_RS04845 PF01634 ATP phosphoribosyltransferase RK54_RS04845 PF08029 HisG, C-terminal domain RK54_RS04855 PF01370 NAD dependent epimerase/dehydratase family RK54_RS04860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS04860 PF03466 LysR substrate binding domain RK54_RS04870 PF13520 Amino acid permease RK54_RS04875 PF08411 Exonuclease C-terminal RK54_RS04875 PF00929 Exonuclease RK54_RS04880 PF13979 SopA-like catalytic domain RK54_RS04880 PF13981 SopA-like central domain RK54_RS04895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS04895 PF00384 Molybdopterin oxidoreductase RK54_RS04895 PF01568 Molydopterin dinucleotide binding domain RK54_RS04900 PF12800 4Fe-4S binding domain RK54_RS04900 PF13247 4Fe-4S dicluster domain RK54_RS04905 PF01292 Prokaryotic cytochrome b561 RK54_RS04910 PF00768 D-alanyl-D-alanine carboxypeptidase RK54_RS04910 PF07943 Penicillin-binding protein 5, C-terminal domain RK54_RS04915 PF06445 GyrI-like small molecule binding domain RK54_RS04920 PF04632 Fusaric acid resistance protein family RK54_RS04925 PF04363 Protein of unknown function (DUF496) RK54_RS04930 PF00288 GHMP kinases N terminal domain RK54_RS04935 PF00871 Acetokinase family RK54_RS04940 PF10662 Ethanolamine utilisation - propanediol utilisation RK54_RS04945 PF00936 BMC domain RK54_RS04955 PF13375 RnfC Barrel sandwich hybrid domain RK54_RS04955 PF10531 SLBB domain RK54_RS04955 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RK54_RS04955 PF13237 4Fe-4S dicluster domain RK54_RS04960 PF00465 Iron-containing alcohol dehydrogenase RK54_RS04960 PF00171 Aldehyde dehydrogenase family RK54_RS04965 PF00171 Aldehyde dehydrogenase family RK54_RS04970 PF01923 Cobalamin adenosyltransferase RK54_RS04975 PF03319 Ethanolamine utilisation protein EutN/carboxysome RK54_RS04985 PF06130 Phosphate propanoyltransferase RK54_RS04990 PF00936 BMC domain RK54_RS04995 PF00936 BMC domain RK54_RS05005 PF08841 Diol dehydratase reactivase ATPase-like domain RK54_RS05005 PF18427 DD-reactivating factor swiveling domain RK54_RS05010 PF02287 Dehydratase small subunit RK54_RS05015 PF02288 Dehydratase medium subunit RK54_RS05020 PF02286 Dehydratase large subunit RK54_RS05025 PF00936 BMC domain RK54_RS05030 PF00936 BMC domain RK54_RS05035 PF00230 Major intrinsic protein RK54_RS05040 PF12833 Helix-turn-helix domain RK54_RS05040 PF10114 Sensory domain found in PocR RK54_RS05045 PF07685 CobB/CobQ-like glutamine amidotransferase domain RK54_RS05045 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RK54_RS05050 PF03186 CobD/Cbib protein RK54_RS05055 PF02570 Precorrin-8X methylmutase RK54_RS05060 PF01888 CbiD RK54_RS05065 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RK54_RS05070 PF05175 Methyltransferase small domain RK54_RS05075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RK54_RS05080 PF11760 Cobalamin synthesis G N-terminal RK54_RS05080 PF11761 Cobalamin biosynthesis central region RK54_RS05080 PF01890 Cobalamin synthesis G C-terminus RK54_RS05085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RK54_RS05090 PF02571 Precorrin-6x reductase CbiJ/CobK RK54_RS05095 PF06180 Cobalt chelatase (CbiK) RK54_RS05100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RK54_RS05105 PF01891 Cobalt uptake substrate-specific transmembrane region RK54_RS05110 PF02553 Cobalt transport protein component CbiN RK54_RS05115 PF02361 Cobalt transport protein RK54_RS05120 PF00005 ABC transporter RK54_RS05125 PF07685 CobB/CobQ-like glutamine amidotransferase domain RK54_RS05130 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase RK54_RS05135 PF02654 Cobalamin-5-phosphate synthase RK54_RS05140 PF02277 Phosphoribosyltransferase RK54_RS05145 PF03734 L,D-transpeptidase catalytic domain RK54_RS05145 PF17969 L,D-transpeptidase C-terminal domain RK54_RS05155 PF01554 MatE RK54_RS05185 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus RK54_RS05185 PF01048 Phosphorylase superfamily RK54_RS05240 PF13356 Arm DNA-binding domain RK54_RS05240 PF00589 Phage integrase family RK54_RS05250 PF06167 Glucose-regulated metallo-peptidase M90 RK54_RS05270 PF00717 Peptidase S24-like RK54_RS05275 PF13438 Domain of unknown function (DUF4113) RK54_RS05275 PF00817 impB/mucB/samB family RK54_RS05275 PF11799 impB/mucB/samB family C-terminal domain RK54_RS05280 PF00313 'Cold-shock' DNA-binding domain RK54_RS05290 PF00267 Gram-negative porin RK54_RS05300 PF01966 HD domain RK54_RS05305 PF18284 DNA methylase N-terminal domain RK54_RS05305 PF00145 C-5 cytosine-specific DNA methylase RK54_RS05310 PF03852 DNA mismatch endonuclease Vsr RK54_RS05315 PF00892 EamA-like transporter family RK54_RS05320 PF05661 Protein of unknown function (DUF808) RK54_RS05325 PF09926 Uncharacterized small protein (DUF2158) RK54_RS05330 PF00990 Diguanylate cyclase, GGDEF domain RK54_RS05330 PF17151 Periplasmic sensor domain RK54_RS05340 PF10733 Protein of unknown function (DUF2525) RK54_RS05345 PF10781 Dextransucrase DSRB RK54_RS05350 PF00196 Bacterial regulatory proteins, luxR family RK54_RS05355 PF01311 Bacterial export proteins, family 1 RK54_RS05360 PF01313 Bacterial export proteins, family 3 RK54_RS05365 PF00813 FliP family RK54_RS05370 PF04347 Flagellar biosynthesis protein, FliO RK54_RS05375 PF16973 Flagellar motor switch protein FliN N-terminal RK54_RS05375 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RK54_RS05380 PF02154 Flagellar motor switch protein FliM RK54_RS05380 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RK54_RS05385 PF03748 Flagellar basal body-associated protein FliL RK54_RS05390 PF02120 Flagellar hook-length control protein FliK RK54_RS05395 PF02050 Flagellar FliJ protein RK54_RS05400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RK54_RS05400 PF18269 T3SS EscN ATPase C-terminal domain RK54_RS05405 PF02108 Flagellar assembly protein FliH RK54_RS05410 PF14842 FliG N-terminal domain RK54_RS05410 PF14841 FliG middle domain RK54_RS05410 PF01706 FliG C-terminal domain RK54_RS05415 PF01514 Secretory protein of YscJ/FliF family RK54_RS05415 PF08345 Flagellar M-ring protein C-terminal RK54_RS05420 PF02049 Flagellar hook-basal body complex protein FliE RK54_RS05430 PF01206 Sulfurtransferase TusA RK54_RS05435 PF04143 Sulphur transport RK54_RS05440 PF13987 YedD-like protein RK54_RS05445 PF00128 Alpha amylase, catalytic domain RK54_RS05445 PF02806 Alpha amylase, C-terminal all-beta domain RK54_RS05450 PF05400 Flagellar protein FliT RK54_RS05455 PF02561 Flagellar protein FliS RK54_RS05460 PF07195 Flagellar hook-associated protein 2 C-terminus RK54_RS05460 PF07196 Flagellin hook IN motif RK54_RS05460 PF02465 Flagellar hook-associated protein 2 N-terminus RK54_RS05465 PF00700 Bacterial flagellin C-terminal helical region RK54_RS05465 PF00669 Bacterial flagellin N-terminal helical region RK54_RS05465 PF08884 Flagellin D3 domain RK54_RS05475 PF04542 Sigma-70 region 2 RK54_RS05475 PF04545 Sigma-70, region 4 RK54_RS05475 PF04539 Sigma-70 region 3 RK54_RS05480 PF02899 Phage integrase, N-terminal SAM-like domain RK54_RS05485 PF00497 Bacterial extracellular solute-binding proteins, family 3 RK54_RS05490 PF00291 Pyridoxal-phosphate dependent enzyme RK54_RS05495 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS05500 PF00005 ABC transporter RK54_RS05505 PF03472 Autoinducer binding domain RK54_RS05505 PF00196 Bacterial regulatory proteins, luxR family RK54_RS05510 PF10769 Protein of unknown function (DUF2594) RK54_RS05520 PF00196 Bacterial regulatory proteins, luxR family RK54_RS05520 PF00072 Response regulator receiver domain RK54_RS05525 PF01541 GIY-YIG catalytic domain RK54_RS05525 PF02151 UvrB/uvrC motif RK54_RS05525 PF08459 UvrC Helix-hairpin-helix N-terminal RK54_RS05530 PF01066 CDP-alcohol phosphatidyltransferase RK54_RS05565 PF02810 SEC-C motif RK54_RS05565 PF03695 Uncharacterised protein family (UPF0149) RK54_RS05570 PF03222 Tryptophan/tyrosine permease family RK54_RS05575 PF10678 Protein of unknown function (DUF2492) RK54_RS05580 PF00210 Ferritin-like domain RK54_RS05585 PF13992 YecR-like lipoprotein RK54_RS05595 PF00210 Ferritin-like domain RK54_RS05610 PF02358 Trehalose-phosphatase RK54_RS05615 PF00982 Glycosyltransferase family 20 RK54_RS05620 PF00582 Universal stress protein family RK54_RS05630 PF05247 Flagellar transcriptional activator (FlhD) RK54_RS05635 PF05280 Flagellar transcriptional activator (FlhC) RK54_RS05640 PF01618 MotA/TolQ/ExbB proton channel family RK54_RS05645 PF00691 OmpA family RK54_RS05645 PF13677 Membrane MotB of proton-channel complex MotA/MotB RK54_RS05650 PF01627 Hpt domain RK54_RS05650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS05650 PF01584 CheW-like domain RK54_RS05650 PF09078 CheY binding RK54_RS05650 PF02895 Signal transducing histidine kinase, homodimeric domain RK54_RS05655 PF01584 CheW-like domain RK54_RS05660 PF00672 HAMP domain RK54_RS05660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RK54_RS05660 PF02203 Tar ligand binding domain homologue RK54_RS05665 PF01739 CheR methyltransferase, SAM binding domain RK54_RS05665 PF03705 CheR methyltransferase, all-alpha domain RK54_RS05670 PF01339 CheB methylesterase RK54_RS05670 PF00072 Response regulator receiver domain RK54_RS05675 PF00072 Response regulator receiver domain RK54_RS05680 PF04344 Chemotaxis phosphatase, CheZ RK54_RS05685 PF01312 FlhB HrpN YscU SpaS Family RK54_RS05690 PF00771 FHIPEP family RK54_RS05695 PF06366 Flagellar protein FlhE RK54_RS05700 PF07470 Glycosyl Hydrolase Family 88 RK54_RS05705 PF00905 Penicillin binding protein transpeptidase domain RK54_RS05705 PF03717 Penicillin-binding Protein dimerisation domain RK54_RS05710 PF00750 tRNA synthetases class I (R) RK54_RS05710 PF03485 Arginyl tRNA synthetase N terminal domain RK54_RS05710 PF05746 DALR anticodon binding domain RK54_RS05715 PF06185 YecM protein RK54_RS05720 PF03932 CutC family RK54_RS05730 PF08003 Protein of unknown function (DUF1698) RK54_RS05735 PF13649 Methyltransferase domain RK54_RS05740 PF01124 MAPEG family RK54_RS05745 PF01904 Protein of unknown function DUF72 RK54_RS05750 PF00857 Isochorismatase family RK54_RS05755 PF02938 GAD domain RK54_RS05755 PF00152 tRNA synthetases class II (D, K and N) RK54_RS05755 PF01336 OB-fold nucleic acid binding domain RK54_RS05760 PF00293 NUDIX domain RK54_RS05765 PF01709 Transcriptional regulator RK54_RS05770 PF02075 Crossover junction endodeoxyribonuclease RuvC RK54_RS05775 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family RK54_RS05785 PF07499 RuvA, C-terminal domain RK54_RS05785 PF01330 RuvA N terminal domain RK54_RS05790 PF05491 RuvB C-terminal winged helix domain RK54_RS05790 PF17864 RuvB AAA lid domain RK54_RS05790 PF05496 Holliday junction DNA helicase RuvB P-loop domain RK54_RS05795 PF00950 ABC 3 transport family RK54_RS05800 PF00005 ABC transporter RK54_RS05805 PF01297 Zinc-uptake complex component A periplasmic RK54_RS05810 PF01476 LysM domain RK54_RS05810 PF08525 Opacity-associated protein A N-terminal motif RK54_RS05810 PF01551 Peptidase family M23 RK54_RS05820 PF03279 Bacterial lipid A biosynthesis acyltransferase RK54_RS05825 PF02887 Pyruvate kinase, alpha/beta domain RK54_RS05825 PF00224 Pyruvate kinase, barrel domain RK54_RS05830 PF01418 Helix-turn-helix domain, rpiR family RK54_RS05830 PF01380 SIS domain RK54_RS05840 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RK54_RS05840 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RK54_RS05845 PF00920 Dehydratase family RK54_RS05850 PF01081 KDPG and KHG aldolase RK54_RS05855 PF02222 ATP-grasp domain RK54_RS05860 PF07130 YebG protein RK54_RS05865 PF13995 YebF-like protein RK54_RS05870 PF04391 Protein of unknown function (DUF533) RK54_RS05875 PF00326 Prolyl oligopeptidase family RK54_RS05875 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RK54_RS05880 PF00929 Exonuclease RK54_RS05885 PF00795 Carbon-nitrogen hydrolase RK54_RS05890 PF06440 DNA polymerase III, theta subunit RK54_RS05895 PF04234 CopC domain RK54_RS05900 PF05425 Copper resistance protein D RK54_RS05905 PF10709 Protein of unknown function (DUF2511) RK54_RS05920 PF12684 PDDEXK-like domain of unknown function (DUF3799) RK54_RS05920 PF06630 Enterobacterial exodeoxyribonuclease VIII RK54_RS05930 PF10721 Protein of unknown function (DUF2514) RK54_RS05965 PF02040 Arsenical pump membrane protein RK54_RS05975 PF00239 Resolvase, N terminal domain RK54_RS05975 PF02796 Helix-turn-helix domain of resolvase RK54_RS05990 PF00892 EamA-like transporter family RK54_RS06030 PF00583 Acetyltransferase (GNAT) family RK54_RS06040 PF07166 Protein of unknown function (DUF1398) RK54_RS06045 PF05364 Salmonella type III secretion SopE effector N-terminus RK54_RS06045 PF07487 SopE GEF domain RK54_RS06055 PF00149 Calcineurin-like phosphoesterase RK54_RS06060 PF07358 Protein of unknown function (DUF1482) RK54_RS06065 PF07351 Protein of unknown function (DUF1480) RK54_RS06070 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF RK54_RS06070 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF RK54_RS06070 PF01189 16S rRNA methyltransferase RsmB/F RK54_RS06075 PF02470 MlaD protein RK54_RS06080 PF04403 Paraquat-inducible protein A RK54_RS06085 PF13185 GAF domain RK54_RS06090 PF04352 ProQ/FINO family RK54_RS06090 PF17516 ProQ C-terminal domain RK54_RS06095 PF17804 Tail specific protease N-terminal domain RK54_RS06095 PF03572 Peptidase family S41 RK54_RS06095 PF00595 PDZ domain RK54_RS06095 PF11818 C-terminal domain of tail specific protease (DUF3340) RK54_RS06100 PF01435 Peptidase family M48 RK54_RS06105 PF07690 Major Facilitator Superfamily RK54_RS06110 PF01614 Bacterial transcriptional regulator RK54_RS06110 PF09339 IclR helix-turn-helix domain RK54_RS06115 PF13996 YobH-like protein RK54_RS06120 PF13998 MgrB protein RK54_RS06125 PF13974 YebO-like protein RK54_RS06130 PF10736 Protein of unknown function (DUF2627) RK54_RS06135 PF00313 'Cold-shock' DNA-binding domain RK54_RS06140 PF03717 Penicillin-binding Protein dimerisation domain RK54_RS06140 PF00905 Penicillin binding protein transpeptidase domain RK54_RS06145 PF13847 Methyltransferase domain RK54_RS06150 PF02659 Putative manganese efflux pump RK54_RS06160 PF06173 Protein of unknown function (DUF986) RK54_RS06165 PF03613 PTS system mannose/fructose/sorbose family IID component RK54_RS06170 PF03609 PTS system sorbose-specific iic component RK54_RS06175 PF03830 PTS system sorbose subfamily IIB component RK54_RS06175 PF03610 PTS system fructose IIA component RK54_RS06185 PF03471 Transporter associated domain RK54_RS06185 PF03741 Integral membrane protein TerC family RK54_RS06190 PF00563 EAL domain RK54_RS06190 PF12792 CSS motif domain associated with EAL RK54_RS06195 PF03313 Serine dehydratase alpha chain RK54_RS06195 PF03315 Serine dehydratase beta chain RK54_RS06200 PF00293 NUDIX domain RK54_RS06205 PF04715 Anthranilate synthase component I, N terminal region RK54_RS06205 PF00425 chorismate binding enzyme RK54_RS06210 PF03701 Uncharacterised protein family (UPF0181) RK54_RS06215 PF01042 Endoribonuclease L-PSP RK54_RS06220 PF13307 Helicase C-terminal domain RK54_RS06220 PF04851 Type III restriction enzyme, res subunit RK54_RS06225 PF00814 Glycoprotease family RK54_RS06230 PF03843 Outer membrane lipoprotein Slp family RK54_RS06240 PF00501 AMP-binding enzyme RK54_RS06240 PF13193 AMP-binding enzyme C-terminal domain RK54_RS06245 PF00570 HRDC domain RK54_RS06245 PF01612 3'-5' exonuclease RK54_RS06250 PF03776 Septum formation topological specificity factor MinE RK54_RS06255 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RK54_RS06260 PF05209 Septum formation inhibitor MinC, N-terminal domain RK54_RS06260 PF03775 Septum formation inhibitor MinC, C-terminal domain RK54_RS06265 PF05166 YcgL domain RK54_RS06270 PF01557 Fumarylacetoacetate (FAA) hydrolase family RK54_RS06275 PF03692 Putative zinc- or iron-chelating domain RK54_RS06285 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system RK54_RS06295 PF02600 Disulfide bond formation protein DsbB RK54_RS06300 PF06450 Bacterial Na+/H+ antiporter B (NhaB) RK54_RS06305 PF07840 FadR C-terminal domain RK54_RS06305 PF00392 Bacterial regulatory proteins, gntR family RK54_RS06310 PF04293 SpoVR like protein RK54_RS06315 PF01266 FAD dependent oxidoreductase RK54_RS06320 PF00842 Alanine racemase, C-terminal domain RK54_RS06320 PF01168 Alanine racemase, N-terminal domain RK54_RS06325 PF03471 Transporter associated domain RK54_RS06325 PF02080 TrkA-C domain RK54_RS06325 PF00999 Sodium/hydrogen exchanger family RK54_RS06330 PF17676 LD-carboxypeptidase C-terminal domain RK54_RS06330 PF02016 LD-carboxypeptidase N-terminal domain RK54_RS06335 PF01464 Transglycosylase SLT domain RK54_RS06340 PF07238 PilZ domain RK54_RS06340 PF07317 Flagellar regulator YcgR RK54_RS06345 PF04226 Transglycosylase associated protein RK54_RS06350 PF01204 Trehalase RK54_RS06355 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RK54_RS06355 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RK54_RS06360 PF08173 Membrane bound YbgT-like protein RK54_RS06365 PF02322 Cytochrome bd terminal oxidase subunit II RK54_RS06370 PF01654 Cytochrome bd terminal oxidase subunit I RK54_RS06375 PF04809 HupH hydrogenase expression protein, C-terminal conserved region RK54_RS06380 PF07449 Hydrogenase-1 expression protein HyaE RK54_RS06385 PF01750 Hydrogenase maturation protease RK54_RS06390 PF01292 Prokaryotic cytochrome b561 RK54_RS06395 PF00374 Nickel-dependent hydrogenase RK54_RS06400 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RK54_RS06400 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RK54_RS06410 PF01926 50S ribosome-binding GTPase RK54_RS06410 PF06071 Protein of unknown function (DUF933) RK54_RS06415 PF01195 Peptidyl-tRNA hydrolase RK54_RS06420 PF10762 Protein of unknown function (DUF2583) RK54_RS06425 PF01740 STAS domain RK54_RS06425 PF00916 Sulfate permease family RK54_RS06430 PF14572 Phosphoribosyl synthetase-associated domain RK54_RS06430 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RK54_RS06435 PF00288 GHMP kinases N terminal domain RK54_RS06435 PF08544 GHMP kinases C terminal RK54_RS06440 PF03550 Outer membrane lipoprotein LolB RK54_RS06445 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RK54_RS06445 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RK54_RS06445 PF01488 Shikimate / quinate 5-dehydrogenase RK54_RS06450 PF03462 PCRF domain RK54_RS06450 PF00472 RF-1 domain RK54_RS06455 PF13847 Methyltransferase domain RK54_RS06455 PF17827 PrmC N-terminal domain RK54_RS06460 PF04247 Invasion gene expression up-regulator, SirB RK54_RS06465 PF13369 Transglutaminase-like superfamily RK54_RS06470 PF00793 DAHP synthetase I family RK54_RS06475 PF01699 Sodium/calcium exchanger protein RK54_RS06480 PF06150 ChaB RK54_RS06485 PF02635 DsrE/DsrF-like family RK54_RS06490 PF11924 Inverse autotransporter, beta-domain RK54_RS06495 PF00196 Bacterial regulatory proteins, luxR family RK54_RS06495 PF00072 Response regulator receiver domain RK54_RS06500 PF00672 HAMP domain RK54_RS06500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS06500 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RK54_RS06500 PF07730 Histidine kinase RK54_RS06510 PF07690 Major Facilitator Superfamily RK54_RS06515 PF00384 Molybdopterin oxidoreductase RK54_RS06515 PF14710 Respiratory nitrate reductase alpha N-terminal RK54_RS06515 PF01568 Molydopterin dinucleotide binding domain RK54_RS06520 PF14711 Respiratory nitrate reductase beta C-terminal RK54_RS06520 PF13247 4Fe-4S dicluster domain RK54_RS06525 PF02613 Nitrate reductase delta subunit RK54_RS06530 PF02665 Nitrate reductase gamma subunit RK54_RS06580 PF00551 Formyl transferase RK54_RS06580 PF01842 ACT domain RK54_RS06585 PF02810 SEC-C motif RK54_RS06590 PF01734 Patatin-like phospholipase RK54_RS06595 PF00072 Response regulator receiver domain RK54_RS06600 PF00483 Nucleotidyl transferase RK54_RS06605 PF00816 H-NS histone family RK54_RS06610 PF00265 Thymidine kinase RK54_RS06615 PF00171 Aldehyde dehydrogenase family RK54_RS06615 PF00465 Iron-containing alcohol dehydrogenase RK54_RS06620 PF01914 MarC family integral membrane protein RK54_RS06630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK54_RS06635 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS06640 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS06640 PF12911 N-terminal TM domain of oligopeptide transport permease C RK54_RS06645 PF00005 ABC transporter RK54_RS06645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK54_RS06650 PF00005 ABC transporter RK54_RS06650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK54_RS06655 PF00520 Ion transport protein RK54_RS06655 PF00027 Cyclic nucleotide-binding domain RK54_RS06660 PF04269 Protein of unknown function, DUF440 RK54_RS06665 PF13396 Phospholipase_D-nuclease N-terminal RK54_RS06665 PF13091 PLD-like domain RK54_RS06670 PF03795 YCII-related domain RK54_RS06675 PF03544 Gram-negative bacterial TonB protein C-terminal RK54_RS06680 PF03061 Thioesterase superfamily RK54_RS06685 PF04279 Intracellular septation protein A RK54_RS06695 PF03692 Putative zinc- or iron-chelating domain RK54_RS06700 PF03922 OmpW family RK54_RS06705 PF05067 Manganese containing catalase RK54_RS06710 PF05974 Domain of unknown function (DUF892) RK54_RS06715 PF05974 Domain of unknown function (DUF892) RK54_RS06720 PF10685 Stress-induced bacterial acidophilic repeat motif RK54_RS06725 PF00290 Tryptophan synthase alpha chain RK54_RS06730 PF00291 Pyridoxal-phosphate dependent enzyme RK54_RS06735 PF00218 Indole-3-glycerol phosphate synthase RK54_RS06735 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RK54_RS06740 PF00117 Glutamine amidotransferase class-I RK54_RS06740 PF02885 Glycosyl transferase family, helical bundle domain RK54_RS06740 PF00591 Glycosyl transferase family, a/b domain RK54_RS06745 PF00425 chorismate binding enzyme RK54_RS06745 PF04715 Anthranilate synthase component I, N terminal region RK54_RS06750 PF08255 Trp-operon Leader Peptide RK54_RS06755 PF02811 PHP domain RK54_RS06760 PF01300 Telomere recombination RK54_RS06765 PF01479 S4 domain RK54_RS06765 PF00849 RNA pseudouridylate synthase RK54_RS06770 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP RK54_RS06775 PF00106 short chain dehydrogenase RK54_RS06780 PF08496 Peptidase family S49 N-terminal RK54_RS06780 PF01343 Peptidase family S49 RK54_RS06785 PF10692 Protein of unknown function (DUF2498) RK54_RS06795 PF01751 Toprim domain RK54_RS06795 PF01131 DNA topoisomerase RK54_RS06795 PF08272 Topoisomerase I zinc-ribbon-like RK54_RS06795 PF01396 Topoisomerase DNA binding C4 zinc finger RK54_RS06800 PF03466 LysR substrate binding domain RK54_RS06800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS06815 PF00330 Aconitase family (aconitate hydratase) RK54_RS06815 PF00694 Aconitase C-terminal domain RK54_RS06820 PF00925 GTP cyclohydrolase II RK54_RS06825 PF01569 PAP2 superfamily RK54_RS06835 PF06305 Lipopolysaccharide assembly protein A domain RK54_RS06840 PF18073 Rubredoxin metal binding domain RK54_RS06845 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RK54_RS06850 PF01253 Translation initiation factor SUI1 RK54_RS06855 PF05433 Glycine zipper 2TM domain RK54_RS06860 PF00455 DeoR C terminal sensor domain RK54_RS06860 PF08220 DeoR-like helix-turn-helix domain RK54_RS06870 PF00563 EAL domain RK54_RS06870 PF13426 PAS domain RK54_RS06870 PF00990 Diguanylate cyclase, GGDEF domain RK54_RS06880 PF00575 S1 RNA binding domain RK54_RS06880 PF00773 RNB domain RK54_RS06880 PF08206 Ribonuclease B OB domain RK54_RS06880 PF17876 Cold shock domain RK54_RS06915 PF00005 ABC transporter RK54_RS06920 PF00005 ABC transporter RK54_RS06920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK54_RS06925 PF12911 N-terminal TM domain of oligopeptide transport permease C RK54_RS06925 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS06930 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS06935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK54_RS06940 PF00158 Sigma-54 interaction domain RK54_RS06940 PF02954 Bacterial regulatory protein, Fis family RK54_RS06945 PF04012 PspA/IM30 family RK54_RS06950 PF06667 Phage shock protein B RK54_RS06955 PF04024 PspC domain RK54_RS06960 PF09584 Phage shock protein PspD (Phageshock_PspD) RK54_RS06965 PF00581 Rhodanese-like domain RK54_RS06970 PF04317 YcjX-like family, DUF463 RK54_RS06975 PF05128 Domain of unknown function (DUF697) RK54_RS06980 PF18024 Helix-turn-helix domain RK54_RS06980 PF00158 Sigma-54 interaction domain RK54_RS06985 PF08534 Redoxin RK54_RS06990 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RK54_RS06990 PF13378 Enolase C-terminal domain-like RK54_RS06995 PF00246 Zinc carboxypeptidase RK54_RS07000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK54_RS07010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS07010 PF03466 LysR substrate binding domain RK54_RS07015 PF00248 Aldo/keto reductase family RK54_RS07025 PF00440 Bacterial regulatory proteins, tetR family RK54_RS07040 PF12833 Helix-turn-helix domain RK54_RS07040 PF06445 GyrI-like small molecule binding domain RK54_RS07060 PF08534 Redoxin RK54_RS07080 PF00924 Mechanosensitive ion channel RK54_RS07085 PF10749 Protein of unknown function (DUF2534) RK54_RS07090 PF00582 Universal stress protein family RK54_RS07095 PF00027 Cyclic nucleotide-binding domain RK54_RS07095 PF13545 Crp-like helix-turn-helix domain RK54_RS07100 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RK54_RS07100 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RK54_RS07105 PF01713 Smr domain RK54_RS07115 PF00672 HAMP domain RK54_RS07115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RK54_RS07115 PF02203 Tar ligand binding domain homologue RK54_RS07120 PF01544 CorA-like Mg2+ transporter protein RK54_RS07130 PF03880 DbpA RNA binding domain RK54_RS07130 PF00270 DEAD/DEAH box helicase RK54_RS07130 PF00271 Helicase conserved C-terminal domain RK54_RS07135 PF01171 PP-loop family RK54_RS07145 PF00893 Small Multidrug Resistance protein RK54_RS07150 PF00582 Universal stress protein family RK54_RS07160 PF10371 Domain of unknown function RK54_RS07160 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RK54_RS07160 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RK54_RS07160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK54_RS07160 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RK54_RS07170 PF03891 Domain of unknown function (DUF333) RK54_RS07175 PF03724 META domain RK54_RS07180 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK54_RS07180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK54_RS07185 PF11739 Dicarboxylate transport RK54_RS07190 PF13617 YnbE-like lipoprotein RK54_RS07195 PF07027 Protein of unknown function (DUF1318) RK54_RS07205 PF02525 Flavodoxin-like fold RK54_RS07210 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RK54_RS07210 PF00271 Helicase conserved C-terminal domain RK54_RS07210 PF00270 DEAD/DEAH box helicase RK54_RS07210 PF04408 Helicase associated domain (HA2) RK54_RS07210 PF11898 Domain of unknown function (DUF3418) RK54_RS07215 PF02698 DUF218 domain RK54_RS07220 PF01292 Prokaryotic cytochrome b561 RK54_RS07225 PF08242 Methyltransferase domain RK54_RS07235 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS07240 PF00005 ABC transporter RK54_RS07245 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS07250 PF00497 Bacterial extracellular solute-binding proteins, family 3 RK54_RS07260 PF00657 GDSL-like Lipase/Acylhydrolase RK54_RS07260 PF06767 Sif protein RK54_RS07275 PF02583 Metal-sensitive transcriptional repressor RK54_RS07280 PF08240 Alcohol dehydrogenase GroES-like domain RK54_RS07280 PF00107 Zinc-binding dehydrogenase RK54_RS07290 PF00672 HAMP domain RK54_RS07290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RK54_RS07290 PF02203 Tar ligand binding domain homologue RK54_RS07295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS07295 PF03466 LysR substrate binding domain RK54_RS07300 PF07063 Domain of unknown function (DUF1338) RK54_RS07305 PF00135 Carboxylesterase family RK54_RS07310 PF04349 Periplasmic glucan biosynthesis protein, MdoG RK54_RS07315 PF04264 YceI-like domain RK54_RS07320 PF01070 FMN-dependent dehydrogenase RK54_RS07325 PF00583 Acetyltransferase (GNAT) family RK54_RS07330 PF00455 DeoR C terminal sensor domain RK54_RS07330 PF08220 DeoR-like helix-turn-helix domain RK54_RS07335 PF00834 Ribulose-phosphate 3 epimerase family RK54_RS07340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK54_RS07345 PF03437 BtpA family RK54_RS07350 PF03611 PTS system sugar-specific permease component RK54_RS07355 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK54_RS07360 PF05343 M42 glutamyl aminopeptidase RK54_RS07365 PF13302 Acetyltransferase (GNAT) domain RK54_RS07370 PF18836 Beta solenoid repeat from YDCK RK54_RS07375 PF03595 Voltage-dependent anion channel RK54_RS07380 PF03848 Tellurite resistance protein TehB RK54_RS07385 PF11769 Protein of unknown function (DUF3313) RK54_RS07390 PF03594 Benzoate membrane transport protein RK54_RS07395 PF01381 Helix-turn-helix RK54_RS07395 PF07883 Cupin domain RK54_RS07400 PF01136 Peptidase family U32 RK54_RS07400 PF12392 Collagenase RK54_RS07405 PF10829 Protein of unknown function (DUF2554) RK54_RS07410 PF06767 Sif protein RK54_RS07425 PF01427 D-ala-D-ala dipeptidase RK54_RS07430 PF00392 Bacterial regulatory proteins, gntR family RK54_RS07430 PF00155 Aminotransferase class I and II RK54_RS07435 PF00171 Aldehyde dehydrogenase family RK54_RS07445 PF10753 Toxin GhoT_OrtT RK54_RS07465 PF10735 Protein of unknown function (DUF2526) RK54_RS07470 PF04657 Putative inner membrane exporter, YdcZ RK54_RS07480 PF00107 Zinc-binding dehydrogenase RK54_RS07480 PF16884 N-terminal domain of oxidoreductase RK54_RS07485 PF07729 FCD domain RK54_RS07485 PF00392 Bacterial regulatory proteins, gntR family RK54_RS07490 PF00593 TonB dependent receptor RK54_RS07490 PF07715 TonB-dependent Receptor Plug Domain RK54_RS07500 PF06004 Bacterial protein of unknown function (DUF903) RK54_RS07505 PF00324 Amino acid permease RK54_RS07520 PF00797 N-acetyltransferase RK54_RS07525 PF02567 Phenazine biosynthesis-like protein RK54_RS07530 PF02665 Nitrate reductase gamma subunit RK54_RS07535 PF02613 Nitrate reductase delta subunit RK54_RS07540 PF14711 Respiratory nitrate reductase beta C-terminal RK54_RS07540 PF13247 4Fe-4S dicluster domain RK54_RS07545 PF00384 Molybdopterin oxidoreductase RK54_RS07545 PF14710 Respiratory nitrate reductase alpha N-terminal RK54_RS07545 PF01568 Molydopterin dinucleotide binding domain RK54_RS07550 PF07690 Major Facilitator Superfamily RK54_RS07560 PF07690 Major Facilitator Superfamily RK54_RS07570 PF00267 Gram-negative porin RK54_RS07580 PF00892 EamA-like transporter family RK54_RS07585 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS07585 PF01568 Molydopterin dinucleotide binding domain RK54_RS07585 PF00384 Molybdopterin oxidoreductase RK54_RS07590 PF01568 Molydopterin dinucleotide binding domain RK54_RS07590 PF00384 Molybdopterin oxidoreductase RK54_RS07590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS07595 PF13247 4Fe-4S dicluster domain RK54_RS07595 PF12800 4Fe-4S binding domain RK54_RS07595 PF09163 Formate dehydrogenase N, transmembrane RK54_RS07600 PF01292 Prokaryotic cytochrome b561 RK54_RS07605 PF00107 Zinc-binding dehydrogenase RK54_RS07605 PF08240 Alcohol dehydrogenase GroES-like domain RK54_RS07610 PF03949 Malic enzyme, NAD binding domain RK54_RS07610 PF00390 Malic enzyme, N-terminal domain RK54_RS07615 PF08136 30S ribosomal protein subunit S22 family RK54_RS07620 PF10684 Putative biofilm-dependent modulation protein RK54_RS07625 PF02566 OsmC-like protein RK54_RS07630 PF06411 HdeA/HdeB family RK54_RS07640 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RK54_RS07640 PF00128 Alpha amylase, catalytic domain RK54_RS07640 PF11941 Domain of unknown function (DUF3459) RK54_RS07645 PF00128 Alpha amylase, catalytic domain RK54_RS07650 PF00128 Alpha amylase, catalytic domain RK54_RS07650 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RK54_RS07655 PF00155 Aminotransferase class I and II RK54_RS07660 PF03553 Na+/H+ antiporter family RK54_RS07665 PF00356 Bacterial regulatory proteins, lacI family RK54_RS07680 PF03060 Nitronate monooxygenase RK54_RS07685 PF03466 LysR substrate binding domain RK54_RS07685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS07725 PF01042 Endoribonuclease L-PSP RK54_RS07730 PF02547 Queuosine biosynthesis protein RK54_RS07740 PF01494 FAD binding domain RK54_RS07745 PF07690 Major Facilitator Superfamily RK54_RS07755 PF07690 Major Facilitator Superfamily RK54_RS07760 PF00107 Zinc-binding dehydrogenase RK54_RS07760 PF08240 Alcohol dehydrogenase GroES-like domain RK54_RS07765 PF00392 Bacterial regulatory proteins, gntR family RK54_RS07765 PF07729 FCD domain RK54_RS07775 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RK54_RS07775 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RK54_RS07780 PF00374 Nickel-dependent hydrogenase RK54_RS07785 PF01292 Prokaryotic cytochrome b561 RK54_RS07790 PF01750 Hydrogenase maturation protease RK54_RS07795 PF01455 HupF/HypC family RK54_RS07805 PF04809 HupH hydrogenase expression protein, C-terminal conserved region RK54_RS07815 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RK54_RS07820 PF00267 Gram-negative porin RK54_RS07830 PF01062 Bestrophin, RFP-TM, chloride channel RK54_RS07835 PF13811 Domain of unknown function (DUF4186) RK54_RS07840 PF04960 Glutaminase RK54_RS07845 PF00171 Aldehyde dehydrogenase family RK54_RS07850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS07850 PF03466 LysR substrate binding domain RK54_RS07855 PF07690 Major Facilitator Superfamily RK54_RS07860 PF01914 MarC family integral membrane protein RK54_RS07865 PF01047 MarR family RK54_RS07870 PF12833 Helix-turn-helix domain RK54_RS07875 PF13999 MarB protein RK54_RS07880 PF00892 EamA-like transporter family RK54_RS07885 PF07690 Major Facilitator Superfamily RK54_RS07895 PF04076 Bacterial OB fold (BOF) protein RK54_RS07900 PF02464 Competence-damaged protein RK54_RS07905 PF10685 Stress-induced bacterial acidophilic repeat motif RK54_RS07915 PF01432 Peptidase family M3 RK54_RS07920 PF00106 short chain dehydrogenase RK54_RS07925 PF00392 Bacterial regulatory proteins, gntR family RK54_RS07925 PF07729 FCD domain RK54_RS07930 PF14001 YdfZ protein RK54_RS07935 PF01232 Mannitol dehydrogenase Rossmann domain RK54_RS07935 PF08125 Mannitol dehydrogenase C-terminal domain RK54_RS07940 PF00083 Sugar (and other) transporter RK54_RS07940 PF07690 Major Facilitator Superfamily RK54_RS07945 PF08240 Alcohol dehydrogenase GroES-like domain RK54_RS07945 PF00107 Zinc-binding dehydrogenase RK54_RS07950 PF13378 Enolase C-terminal domain-like RK54_RS07950 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RK54_RS07955 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RK54_RS07960 PF06932 Protein of unknown function (DUF1283) RK54_RS07965 PF13302 Acetyltransferase (GNAT) domain RK54_RS07970 PF06788 Uncharacterised protein family (UPF0257) RK54_RS07975 PF06649 Protein of unknown function (DUF1161) RK54_RS07980 PF01568 Molydopterin dinucleotide binding domain RK54_RS07980 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS07980 PF00384 Molybdopterin oxidoreductase RK54_RS07985 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS07985 PF00384 Molybdopterin oxidoreductase RK54_RS07985 PF01568 Molydopterin dinucleotide binding domain RK54_RS07990 PF12800 4Fe-4S binding domain RK54_RS07990 PF13247 4Fe-4S dicluster domain RK54_RS07995 PF04976 DMSO reductase anchor subunit (DmsC) RK54_RS08000 PF02613 Nitrate reductase delta subunit RK54_RS08005 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS08010 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RK54_RS08015 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS08020 PF00005 ABC transporter RK54_RS08020 PF00571 CBS domain RK54_RS08025 PF00654 Voltage gated chloride channel RK54_RS08035 PF00480 ROK family RK54_RS08045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS08045 PF03466 LysR substrate binding domain RK54_RS08050 PF07690 Major Facilitator Superfamily RK54_RS08060 PF00089 Trypsin RK54_RS08065 PF00893 Small Multidrug Resistance protein RK54_RS08070 PF00893 Small Multidrug Resistance protein RK54_RS08080 PF01594 AI-2E family transporter RK54_RS08085 PF02233 NAD(P) transhydrogenase beta subunit RK54_RS08090 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RK54_RS08090 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RK54_RS08090 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RK54_RS08095 PF07338 Protein of unknown function (DUF1471) RK54_RS08100 PF13520 Amino acid permease RK54_RS08105 PF06942 GlpM protein RK54_RS08110 PF00072 Response regulator receiver domain RK54_RS08110 PF00486 Transcriptional regulatory protein, C terminal RK54_RS08120 PF00267 Gram-negative porin RK54_RS08125 PF01979 Amidohydrolase family RK54_RS08125 PF13382 Adenine deaminase C-terminal domain RK54_RS08130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS08130 PF00672 HAMP domain RK54_RS08130 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS08135 PF05472 DNA replication terminus site-binding protein (Ter protein) RK54_RS08140 PF00206 Lyase RK54_RS08140 PF10415 Fumarase C C-terminus RK54_RS08145 PF05681 Fumarate hydratase (Fumerase) RK54_RS08145 PF05683 Fumarase C-terminus RK54_RS08150 PF01238 Phosphomannose isomerase type I RK54_RS08155 PF06097 Bacterial protein of unknown function (DUF945) RK54_RS08170 PF00962 Adenosine/AMP deaminase RK54_RS08175 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RK54_RS08175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RK54_RS08185 PF05321 Haemolysin expression modulating protein RK54_RS08190 PF10754 Protein of unknown function (DUF2569) RK54_RS08195 PF02508 Rnf-Nqr subunit, membrane protein RK54_RS08200 PF04060 Putative Fe-S cluster RK54_RS08205 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RK54_RS08205 PF10531 SLBB domain RK54_RS08205 PF13375 RnfC Barrel sandwich hybrid domain RK54_RS08205 PF12838 4Fe-4S dicluster domain RK54_RS08210 PF03116 NQR2, RnfD, RnfE family RK54_RS08215 PF04205 FMN-binding domain RK54_RS08220 PF02508 Rnf-Nqr subunit, membrane protein RK54_RS08225 PF00730 HhH-GPD superfamily base excision DNA repair protein RK54_RS08225 PF10576 Iron-sulfur binding domain of endonuclease III RK54_RS08225 PF00633 Helix-hairpin-helix motif RK54_RS08230 PF00854 POT family RK54_RS08235 PF02798 Glutathione S-transferase, N-terminal domain RK54_RS08235 PF00043 Glutathione S-transferase, C-terminal domain RK54_RS08240 PF08543 Phosphomethylpyrimidine kinase RK54_RS08245 PF01479 S4 domain RK54_RS08245 PF00579 tRNA synthetases class I (W and Y) RK54_RS08250 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RK54_RS08250 PF01243 Pyridoxamine 5'-phosphate oxidase RK54_RS08255 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme RK54_RS08260 PF03702 Anhydro-N-acetylmuramic acid kinase RK54_RS08265 PF05433 Glycine zipper 2TM domain RK54_RS08270 PF01047 MarR family RK54_RS08275 PF07869 Protein of unknown function (DUF1656) RK54_RS08280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RK54_RS08280 PF00529 HlyD membrane-fusion protein of T1SS RK54_RS08285 PF04632 Fusaric acid resistance protein family RK54_RS08290 PF00080 Copper/zinc superoxide dismutase (SODC) RK54_RS08295 PF00248 Aldo/keto reductase family RK54_RS08300 PF06945 Protein of unknown function (DUF1289) RK54_RS08305 PF00440 Bacterial regulatory proteins, tetR family RK54_RS08305 PF16925 Tetracyclin repressor-like, C-terminal domain RK54_RS08310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RK54_RS08315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK54_RS08320 PF00929 Exonuclease RK54_RS08330 PF00462 Glutaredoxin RK54_RS08335 PF00877 NlpC/P60 family RK54_RS08340 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RK54_RS08340 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RK54_RS08355 PF00356 Bacterial regulatory proteins, lacI family RK54_RS08360 PF03466 LysR substrate binding domain RK54_RS08360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS08365 PF07690 Major Facilitator Superfamily RK54_RS08375 PF00677 Lumazine binding domain RK54_RS08380 PF01554 MatE RK54_RS08395 PF01312 FlhB HrpN YscU SpaS Family RK54_RS08400 PF01311 Bacterial export proteins, family 1 RK54_RS08405 PF01313 Bacterial export proteins, family 3 RK54_RS08410 PF00813 FliP family RK54_RS08415 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RK54_RS08430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RK54_RS08430 PF18269 T3SS EscN ATPase C-terminal domain RK54_RS08435 PF00771 FHIPEP family RK54_RS08445 PF07201 HrpJ-like domain RK54_RS08460 PF01514 Secretory protein of YscJ/FliF family RK54_RS08500 PF05802 Enterobacterial EspB protein RK54_RS08505 PF04888 Secretion system effector C (SseC) like family RK54_RS08515 PF03433 EspA-like secreted protein RK54_RS08535 PF03958 Bacterial type II/III secretion system short domain RK54_RS08535 PF00263 Bacterial type II and III secretion system protein RK54_RS08545 PF00072 Response regulator receiver domain RK54_RS08545 PF01627 Hpt domain RK54_RS08545 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RK54_RS08545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS08545 PF00672 HAMP domain RK54_RS08545 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS08550 PF00196 Bacterial regulatory proteins, luxR family RK54_RS08550 PF00072 Response regulator receiver domain RK54_RS08555 PF13411 MerR HTH family regulatory protein RK54_RS08560 PF08349 Protein of unknown function (DUF1722) RK54_RS08565 PF10965 Protein of unknown function (DUF2767) RK54_RS08570 PF00072 Response regulator receiver domain RK54_RS08570 PF00196 Bacterial regulatory proteins, luxR family RK54_RS08575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS08575 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS08580 PF13247 4Fe-4S dicluster domain RK54_RS08585 PF03916 Polysulphide reductase, NrfD RK54_RS08590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS08590 PF01568 Molydopterin dinucleotide binding domain RK54_RS08590 PF00384 Molybdopterin oxidoreductase RK54_RS08595 PF00294 pfkB family carbohydrate kinase RK54_RS08605 PF00561 alpha/beta hydrolase fold RK54_RS08610 PF00324 Amino acid permease RK54_RS08615 PF02887 Pyruvate kinase, alpha/beta domain RK54_RS08615 PF00224 Pyruvate kinase, barrel domain RK54_RS08620 PF04728 Lipoprotein leucine-zipper RK54_RS08625 PF04728 Lipoprotein leucine-zipper RK54_RS08630 PF04728 Lipoprotein leucine-zipper RK54_RS08635 PF03734 L,D-transpeptidase catalytic domain RK54_RS08635 PF17969 L,D-transpeptidase C-terminal domain RK54_RS08635 PF01476 LysM domain RK54_RS08640 PF02657 Fe-S metabolism associated domain RK54_RS08645 PF00266 Aminotransferase class-V RK54_RS08650 PF01458 Uncharacterized protein family (UPF0051) RK54_RS08655 PF00005 ABC transporter RK54_RS08660 PF01458 Uncharacterized protein family (UPF0051) RK54_RS08665 PF01521 Iron-sulphur cluster biosynthesis RK54_RS08670 PF00375 Sodium:dicarboxylate symporter family RK54_RS08675 PF15930 Domain of unknown function RK54_RS08680 PF03061 Thioesterase superfamily RK54_RS08685 PF02913 FAD linked oxidases, C-terminal domain RK54_RS08685 PF13183 4Fe-4S dicluster domain RK54_RS08685 PF01565 FAD binding domain RK54_RS08690 PF01594 AI-2E family transporter RK54_RS08700 PF08965 Domain of unknown function (DUF1870) RK54_RS08705 PF07690 Major Facilitator Superfamily RK54_RS08710 PF07690 Major Facilitator Superfamily RK54_RS08715 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RK54_RS08715 PF08501 Shikimate dehydrogenase substrate binding domain RK54_RS08720 PF01487 Type I 3-dehydroquinase RK54_RS08725 PF01144 Coenzyme A transferase RK54_RS08730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RK54_RS08730 PF02770 Acyl-CoA dehydrogenase, middle domain RK54_RS08730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RK54_RS08735 PF02311 AraC-like ligand binding domain RK54_RS08735 PF12833 Helix-turn-helix domain RK54_RS08740 PF01012 Electron transfer flavoprotein domain RK54_RS08745 PF00766 Electron transfer flavoprotein FAD-binding domain RK54_RS08745 PF01012 Electron transfer flavoprotein domain RK54_RS08750 PF01494 FAD binding domain RK54_RS08760 PF00501 AMP-binding enzyme RK54_RS08760 PF13193 AMP-binding enzyme C-terminal domain RK54_RS08765 PF00391 PEP-utilising enzyme, mobile domain RK54_RS08765 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RK54_RS08765 PF02896 PEP-utilising enzyme, TIM barrel domain RK54_RS08770 PF03618 Kinase/pyrophosphorylase RK54_RS08775 PF00793 DAHP synthetase I family RK54_RS08780 PF10636 Hemin uptake protein hemP RK54_RS08785 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RK54_RS08790 PF00563 EAL domain RK54_RS08795 PF00877 NlpC/P60 family RK54_RS08800 PF00005 ABC transporter RK54_RS08805 PF00255 Glutathione peroxidase RK54_RS08810 PF01032 FecCD transport family RK54_RS08815 PF00216 Bacterial DNA-binding protein RK54_RS08820 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RK54_RS08820 PF03484 tRNA synthetase B5 domain RK54_RS08820 PF01588 Putative tRNA binding domain RK54_RS08820 PF03483 B3/4 domain RK54_RS08820 PF03147 Ferredoxin-fold anticodon binding domain RK54_RS08825 PF01409 tRNA synthetases class II core domain (F) RK54_RS08825 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RK54_RS08835 PF00453 Ribosomal protein L20 RK54_RS08840 PF01632 Ribosomal protein L35 RK54_RS08845 PF05198 Translation initiation factor IF-3, N-terminal domain RK54_RS08845 PF00707 Translation initiation factor IF-3, C-terminal domain RK54_RS08850 PF02824 TGS domain RK54_RS08850 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RK54_RS08850 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RK54_RS08850 PF03129 Anticodon binding domain RK54_RS08870 PF01223 DNA/RNA non-specific endonuclease RK54_RS08885 PF04338 Protein of unknown function, DUF481 RK54_RS08890 PF00294 pfkB family carbohydrate kinase RK54_RS08895 PF11080 Endoribonuclease GhoS RK54_RS08900 PF03881 Fructosamine kinase RK54_RS08905 PF14002 YniB-like protein RK54_RS08910 PF13419 Haloacid dehalogenase-like hydrolase RK54_RS08915 PF04307 LexA-binding, inner membrane-associated putative hydrolase RK54_RS08920 PF00375 Sodium:dicarboxylate symporter family RK54_RS08925 PF10729 Cell division activator CedA RK54_RS08930 PF00199 Catalase RK54_RS08930 PF06628 Catalase-related immune-responsive RK54_RS08930 PF18011 C-terminal domain found in long catalases RK54_RS08935 PF04794 YdjC-like protein RK54_RS08940 PF11975 Family 4 glycosyl hydrolase C-terminal domain RK54_RS08940 PF02056 Family 4 glycosyl hydrolase RK54_RS08945 PF12833 Helix-turn-helix domain RK54_RS08945 PF07883 Cupin domain RK54_RS08950 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit RK54_RS08955 PF02378 Phosphotransferase system, EIIC RK54_RS08960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK54_RS08970 PF04355 SmpA / OmlA family RK54_RS08975 PF02540 NAD synthase RK54_RS08985 PF07813 LTXXQ motif family protein RK54_RS08995 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RK54_RS09000 PF04996 Succinylarginine dihydrolase RK54_RS09005 PF00171 Aldehyde dehydrogenase family RK54_RS09010 PF04958 Arginine N-succinyltransferase beta subunit RK54_RS09015 PF00202 Aminotransferase class-III RK54_RS09025 PF03372 Endonuclease/Exonuclease/phosphatase family RK54_RS09030 PF00293 NUDIX domain RK54_RS09035 PF07383 Protein of unknown function (DUF1496) RK54_RS09040 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RK54_RS09040 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RK54_RS09045 PF01751 Toprim domain RK54_RS09045 PF01131 DNA topoisomerase RK54_RS09050 PF00586 AIR synthase related protein, N-terminal domain RK54_RS09050 PF02769 AIR synthase related protein, C-terminal domain RK54_RS09055 PF00881 Nitroreductase family RK54_RS09060 PF01343 Peptidase family S49 RK54_RS09065 PF00710 Asparaginase, N-terminal RK54_RS09065 PF17763 Glutaminase/Asparaginase C-terminal domain RK54_RS09070 PF00857 Isochorismatase family RK54_RS09075 PF07023 Protein of unknown function (DUF1315) RK54_RS09080 PF01641 SelR domain RK54_RS09085 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RK54_RS09085 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RK54_RS09095 PF01263 Aldose 1-epimerase RK54_RS09100 PF00248 Aldo/keto reductase family RK54_RS09105 PF13186 Iron-sulfur cluster-binding domain RK54_RS09105 PF04055 Radical SAM superfamily RK54_RS09110 PF06629 MltA-interacting protein MipA RK54_RS09115 PF06798 PrkA serine protein kinase C-terminal domain RK54_RS09115 PF08298 PrkA AAA domain RK54_RS09120 PF04285 Protein of unknown function (DUF444) RK54_RS09130 PF00990 Diguanylate cyclase, GGDEF domain RK54_RS09130 PF17155 Gammaproteobacterial periplasmic sensor domain RK54_RS09135 PF04073 Aminoacyl-tRNA editing domain RK54_RS09145 PF04284 Protein of unknown function (DUF441) RK54_RS09150 PF02311 AraC-like ligand binding domain RK54_RS09150 PF12833 Helix-turn-helix domain RK54_RS09155 PF07690 Major Facilitator Superfamily RK54_RS09160 PF04343 Protein of unknown function, DUF488 RK54_RS09170 PF03891 Domain of unknown function (DUF333) RK54_RS09180 PF04226 Transglycosylase associated protein RK54_RS09195 PF08956 Domain of unknown function (DUF1869) RK54_RS09200 PF09313 Domain of unknown function (DUF1971) RK54_RS09210 PF01810 LysE type translocator RK54_RS09215 PF01817 Chorismate mutase type II RK54_RS09230 PF00376 MerR family regulatory protein RK54_RS09230 PF09278 MerR, DNA binding RK54_RS09240 PF13427 Domain of unknown function (DUF4111) RK54_RS09240 PF01909 Nucleotidyltransferase domain RK54_RS09245 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment RK54_RS09260 PF00924 Mechanosensitive ion channel RK54_RS09265 PF00005 ABC transporter RK54_RS09270 PF00005 ABC transporter RK54_RS09275 PF12911 N-terminal TM domain of oligopeptide transport permease C RK54_RS09275 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS09280 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS09285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK54_RS09295 PF01292 Prokaryotic cytochrome b561 RK54_RS09305 PF00011 Hsp20/alpha crystallin family RK54_RS09330 PF06316 Enterobacterial Ail/Lom protein RK54_RS09345 PF00313 'Cold-shock' DNA-binding domain RK54_RS09350 PF00652 Ricin-type beta-trefoil lectin domain RK54_RS09355 PF06183 DinI-like family RK54_RS09380 PF01797 Transposase IS200 like RK54_RS09390 PF00180 Isocitrate/isopropylmalate dehydrogenase RK54_RS09395 PF00849 RNA pseudouridylate synthase RK54_RS09405 PF00293 NUDIX domain RK54_RS09415 PF04356 Protein of unknown function (DUF489) RK54_RS09420 PF00206 Lyase RK54_RS09420 PF08328 Adenylosuccinate lyase C-terminal RK54_RS09425 PF00072 Response regulator receiver domain RK54_RS09425 PF00486 Transcriptional regulatory protein, C terminal RK54_RS09430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS09430 PF08918 PhoQ Sensor RK54_RS09435 PF08007 Cupin superfamily protein RK54_RS09445 PF07687 Peptidase dimerisation domain RK54_RS09445 PF01546 Peptidase family M20/M25/M40 RK54_RS09450 PF08402 TOBE domain RK54_RS09450 PF00005 ABC transporter RK54_RS09455 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS09460 PF06767 Sif protein RK54_RS09465 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS09470 PF13416 Bacterial extracellular solute-binding protein RK54_RS09475 PF02146 Sir2 family RK54_RS09480 PF00480 ROK family RK54_RS09485 PF02687 FtsX-like permease family RK54_RS09485 PF12704 MacB-like periplasmic core domain RK54_RS09490 PF00005 ABC transporter RK54_RS09495 PF12704 MacB-like periplasmic core domain RK54_RS09495 PF02687 FtsX-like permease family RK54_RS09500 PF03461 TRCF domain RK54_RS09500 PF00270 DEAD/DEAH box helicase RK54_RS09500 PF17757 UvrB interaction domain RK54_RS09500 PF02559 CarD-like/TRCF domain RK54_RS09500 PF00271 Helicase conserved C-terminal domain RK54_RS09505 PF03734 L,D-transpeptidase catalytic domain RK54_RS09505 PF01476 LysM domain RK54_RS09505 PF17969 L,D-transpeptidase C-terminal domain RK54_RS09510 PF07338 Protein of unknown function (DUF1471) RK54_RS09515 PF00440 Bacterial regulatory proteins, tetR family RK54_RS09520 PF05433 Glycine zipper 2TM domain RK54_RS09525 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS09530 PF05728 Uncharacterised protein family (UPF0227) RK54_RS09535 PF00933 Glycosyl hydrolase family 3 N terminal domain RK54_RS09540 PF01636 Phosphotransferase enzyme family RK54_RS09545 PF13036 Peptidoglycan-synthase activator LpoB RK54_RS09550 PF07233 Protein of unknown function (DUF1425) RK54_RS09555 PF01230 HIT domain RK54_RS09560 PF07715 TonB-dependent Receptor Plug Domain RK54_RS09560 PF00593 TonB dependent receptor RK54_RS09565 PF00367 phosphotransferase system, EIIB RK54_RS09565 PF02378 Phosphotransferase system, EIIC RK54_RS09570 PF01026 TatD related DNase RK54_RS09575 PF09115 DNA polymerase III, delta subunit, C terminal RK54_RS09580 PF02223 Thymidylate kinase RK54_RS09585 PF02618 YceG-like family RK54_RS09590 PF01063 Amino-transferase class IV RK54_RS09595 PF00109 Beta-ketoacyl synthase, N-terminal domain RK54_RS09595 PF02801 Beta-ketoacyl synthase, C-terminal domain RK54_RS09600 PF00550 Phosphopantetheine attachment site RK54_RS09610 PF00698 Acyl transferase domain RK54_RS09615 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RK54_RS09615 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RK54_RS09620 PF02504 Fatty acid synthesis protein RK54_RS09625 PF01783 Ribosomal L32p protein family RK54_RS09630 PF02620 Large ribosomal RNA subunit accumulation protein YceD RK54_RS09635 PF02545 Maf-like protein RK54_RS09650 PF01479 S4 domain RK54_RS09650 PF00849 RNA pseudouridylate synthase RK54_RS09660 PF00575 S1 RNA binding domain RK54_RS09660 PF12111 Polyribonucleotide phosphorylase C terminal RK54_RS09660 PF10150 Ribonuclease E/G family RK54_RS09665 PF00669 Bacterial flagellin N-terminal helical region RK54_RS09670 PF00460 Flagella basal body rod protein RK54_RS09670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RK54_RS09675 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RK54_RS09675 PF10135 Rod binding protein RK54_RS09680 PF02119 Flagellar P-ring protein RK54_RS09685 PF02107 Flagellar L-ring protein RK54_RS09690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RK54_RS09690 PF00460 Flagella basal body rod protein RK54_RS09695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RK54_RS09695 PF00460 Flagella basal body rod protein RK54_RS09700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RK54_RS09700 PF00460 Flagella basal body rod protein RK54_RS09700 PF07559 Flagellar basal body protein FlaE RK54_RS09705 PF03963 Flagellar hook capping protein - N-terminal region RK54_RS09705 PF13861 FlgD Tudor-like domain RK54_RS09705 PF13860 FlgD Ig-like domain RK54_RS09710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RK54_RS09710 PF00460 Flagella basal body rod protein RK54_RS09715 PF00460 Flagella basal body rod protein RK54_RS09725 PF13144 Chaperone for flagella basal body P-ring formation RK54_RS09730 PF04316 Anti-sigma-28 factor, FlgM RK54_RS09735 PF05130 FlgN protein RK54_RS09740 PF03023 Lipid II flippase MurJ RK54_RS09745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RK54_RS09750 PF04337 Protein of unknown function, DUF480 RK54_RS09755 PF13302 Acetyltransferase (GNAT) domain RK54_RS09760 PF07690 Major Facilitator Superfamily RK54_RS09765 PF04399 Glutaredoxin 2, C terminal domain RK54_RS09765 PF13417 Glutathione S-transferase, N-terminal domain RK54_RS09770 PF07273 Protein of unknown function (DUF1439) RK54_RS09775 PF01979 Amidohydrolase family RK54_RS09780 PF06183 DinI-like family RK54_RS09785 PF13991 BssS protein family RK54_RS09790 PF01266 FAD dependent oxidoreductase RK54_RS09795 PF10968 Protein of unknown function (DUF2770) RK54_RS09805 PF01292 Prokaryotic cytochrome b561 RK54_RS09810 PF04264 YceI-like domain RK54_RS09815 PF12368 Rhodanase C-terminal RK54_RS09815 PF00581 Rhodanese-like domain RK54_RS09815 PF17773 UPF0176 acylphosphatase like domain RK54_RS09820 PF03279 Bacterial lipid A biosynthesis acyltransferase RK54_RS09830 PF07690 Major Facilitator Superfamily RK54_RS09835 PF13984 MsyB protein RK54_RS09840 PF07119 Protein of unknown function (DUF1375) RK54_RS09845 PF00535 Glycosyl transferase family 2 RK54_RS09850 PF04349 Periplasmic glucan biosynthesis protein, MdoG RK54_RS09855 PF01757 Acyltransferase family RK54_RS09860 PF13091 PLD-like domain RK54_RS09865 PF01661 Macro domain RK54_RS09875 PF10610 Thin aggregative fimbriae synthesis protein RK54_RS09880 PF07012 Curlin associated repeat RK54_RS09885 PF07012 Curlin associated repeat RK54_RS09895 PF00196 Bacterial regulatory proteins, luxR family RK54_RS09900 PF10627 Curli assembly protein CsgE RK54_RS09905 PF10614 Type VIII secretion system (T8SS), CsgF protein RK54_RS09910 PF03783 Curli production assembly/transport component CsgG RK54_RS09915 PF06496 Protein of unknown function (DUF1097) RK54_RS09920 PF02613 Nitrate reductase delta subunit RK54_RS09925 PF02811 PHP domain RK54_RS09930 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK54_RS09950 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RK54_RS09950 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RK54_RS09955 PF07690 Major Facilitator Superfamily RK54_RS09960 PF06178 Oligogalacturonate-specific porin protein (KdgM) RK54_RS09965 PF01344 Kelch motif RK54_RS09970 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase RK54_RS09980 PF00474 Sodium:solute symporter family RK54_RS09985 PF01418 Helix-turn-helix domain, rpiR family RK54_RS09985 PF01380 SIS domain RK54_RS09990 PF02562 PhoH-like protein RK54_RS10000 PF00474 Sodium:solute symporter family RK54_RS10005 PF00171 Aldehyde dehydrogenase family RK54_RS10005 PF01619 Proline dehydrogenase RK54_RS10005 PF14850 DNA-binding domain of Proline dehydrogenase RK54_RS10005 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RK54_RS10015 PF08362 YcdC-like protein, C-terminal region RK54_RS10015 PF00440 Bacterial regulatory proteins, tetR family RK54_RS10020 PF10685 Stress-induced bacterial acidophilic repeat motif RK54_RS10025 PF03358 NADPH-dependent FMN reductase RK54_RS10030 PF13993 YccJ-like protein RK54_RS10035 PF00328 Histidine phosphatase superfamily (branch 2) RK54_RS10040 PF00578 AhpC/TSA family RK54_RS10045 PF06965 Na+/H+ antiporter 1 RK54_RS10045 PF13462 Thioredoxin RK54_RS10050 PF13098 Thioredoxin-like domain RK54_RS10050 PF11412 Disulphide bond corrector protein DsbC RK54_RS10050 PF02683 Cytochrome C biogenesis protein transmembrane region RK54_RS10065 PF00226 DnaJ domain RK54_RS10065 PF01556 DnaJ C terminal domain RK54_RS10085 PF12706 Beta-lactamase superfamily domain RK54_RS10095 PF07690 Major Facilitator Superfamily RK54_RS10100 PF03328 HpcH/HpaI aldolase/citrate lyase family RK54_RS10105 PF01557 Fumarylacetoacetate (FAA) hydrolase family RK54_RS10115 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase RK54_RS10120 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RK54_RS10125 PF00171 Aldehyde dehydrogenase family RK54_RS10130 PF01557 Fumarylacetoacetate (FAA) hydrolase family RK54_RS10135 PF01047 MarR family RK54_RS10140 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal RK54_RS10140 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal RK54_RS10145 PF01613 Flavin reductase like domain RK54_RS10160 PF00576 HIUase/Transthyretin family RK54_RS10170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS10170 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS10175 PF03577 Peptidase family C69 RK54_RS10185 PF13132 Domain of unknown function (DUF3950) RK54_RS10190 PF05925 Enterobacterial virulence protein IpgD RK54_RS10195 PF07824 Type III secretion chaperone domain RK54_RS10205 PF00805 Pentapeptide repeats (8 copies) RK54_RS10225 PF01027 Inhibitor of apoptosis-promoting Bax1 RK54_RS10230 PF04358 DsrC like protein RK54_RS10235 PF00708 Acylphosphatase RK54_RS10240 PF12833 Helix-turn-helix domain RK54_RS10245 PF01161 Phosphatidylethanolamine-binding protein RK54_RS10250 PF10672 S-adenosylmethionine-dependent methyltransferase RK54_RS10250 PF17785 PUA-like domain RK54_RS10255 PF08755 Hemimethylated DNA-binding protein YccV like RK54_RS10260 PF13380 CoA binding domain RK54_RS10265 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) RK54_RS10270 PF02142 MGS-like domain RK54_RS10275 PF13361 UvrD-like helicase C-terminal domain RK54_RS10275 PF12462 DNA helicase IV / RNA helicase N terminal RK54_RS10275 PF00580 UvrD/REP helicase N-terminal domain RK54_RS10280 PF03733 Inner membrane component domain RK54_RS10285 PF12805 FUSC-like inner membrane protein yccS RK54_RS10290 PF04993 TfoX N-terminal domain RK54_RS10290 PF04994 TfoX C-terminal domain RK54_RS10295 PF03846 Cell division inhibitor SulA RK54_RS10300 PF01389 OmpA-like transmembrane domain RK54_RS10300 PF00691 OmpA family RK54_RS10305 PF17414 MatP C-terminal ribbon-helix-helix domain RK54_RS10305 PF06303 MatP N-terminal domain RK54_RS10310 PF05362 Lon protease (S16) C-terminal proteolytic domain RK54_RS10310 PF13654 AAA domain RK54_RS10315 PF07977 FabA-like domain RK54_RS10320 PF04957 Ribosome modulation factor RK54_RS10325 PF03886 ABC-type transport auxiliary lipoprotein component RK54_RS10330 PF02470 MlaD protein RK54_RS10335 PF04403 Paraquat-inducible protein A RK54_RS10340 PF16326 ABC transporter C-terminal domain RK54_RS10340 PF12848 ABC transporter RK54_RS10340 PF00005 ABC transporter RK54_RS10345 PF02926 THUMP domain RK54_RS10345 PF10672 S-adenosylmethionine-dependent methyltransferase RK54_RS10345 PF01170 Putative RNA methylase family UPF0020 RK54_RS10350 PF03476 MOSC N-terminal beta barrel domain RK54_RS10350 PF00111 2Fe-2S iron-sulfur cluster binding domain RK54_RS10350 PF03473 MOSC domain RK54_RS10355 PF07126 Cell-division protein ZapC RK54_RS10360 PF01180 Dihydroorotate dehydrogenase RK54_RS10365 PF11940 Domain of unknown function (DUF3458) Ig-like fold RK54_RS10365 PF01433 Peptidase family M1 domain RK54_RS10365 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RK54_RS10380 PF00239 Resolvase, N terminal domain RK54_RS10380 PF02796 Helix-turn-helix domain of resolvase RK54_RS10385 PF07487 SopE GEF domain RK54_RS10385 PF05364 Salmonella type III secretion SopE effector N-terminus RK54_RS10390 PF02413 Caudovirales tail fibre assembly protein, lambda gpK RK54_RS10405 PF03335 Phage tail fibre repeat RK54_RS10405 PF07484 Phage Tail Collar Domain RK54_RS10440 PF00080 Copper/zinc superoxide dismutase (SODC) RK54_RS10445 PF13505 Outer membrane protein beta-barrel domain RK54_RS10495 PF00574 Clp protease RK54_RS10520 PF03245 Bacteriophage Rz lysis protein RK54_RS10530 PF00959 Phage lysozyme RK54_RS10560 PF03589 Antitermination protein RK54_RS10590 PF06183 DinI-like family RK54_RS10620 PF06992 Replication protein P RK54_RS10680 PF02086 D12 class N6 adenine-specific DNA methyltransferase RK54_RS10695 PF12167 Arm DNA-binding domain RK54_RS10695 PF00589 Phage integrase family RK54_RS10700 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RK54_RS10700 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RK54_RS10705 PF01235 Sodium:alanine symporter family RK54_RS10710 PF00291 Pyridoxal-phosphate dependent enzyme RK54_RS10720 PF13404 AsnC-type helix-turn-helix domain RK54_RS10720 PF01037 Lrp/AsnC ligand binding domain RK54_RS10725 PF01336 OB-fold nucleic acid binding domain RK54_RS10725 PF00152 tRNA synthetases class II (D, K and N) RK54_RS10730 PF00267 Gram-negative porin RK54_RS10735 PF00155 Aminotransferase class I and II RK54_RS10740 PF00753 Metallo-beta-lactamase superfamily RK54_RS10745 PF05951 Bacterial protein of unknown function (DUF882) RK54_RS10755 PF01471 Putative peptidoglycan binding domain RK54_RS10755 PF03734 L,D-transpeptidase catalytic domain RK54_RS10760 PF16330 MukB hinge domain RK54_RS10760 PF04310 MukB N-terminal RK54_RS10765 PF04288 MukE-like family RK54_RS10770 PF03882 MukF winged-helix domain RK54_RS10770 PF17193 MukF C-terminal domain RK54_RS10770 PF17192 MukF middle domain RK54_RS10775 PF13847 Methyltransferase domain RK54_RS10780 PF02698 DUF218 domain RK54_RS10785 PF01636 Phosphotransferase enzyme family RK54_RS10790 PF02348 Cytidylyltransferase RK54_RS10795 PF03966 Trm112p-like protein RK54_RS10800 PF06224 Winged helix DNA-binding domain RK54_RS10805 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RK54_RS10810 PF00664 ABC transporter transmembrane region RK54_RS10810 PF00005 ABC transporter RK54_RS10815 PF03772 Competence protein RK54_RS10815 PF00753 Metallo-beta-lactamase superfamily RK54_RS10820 PF00216 Bacterial DNA-binding protein RK54_RS10825 PF00575 S1 RNA binding domain RK54_RS10830 PF02224 Cytidylate kinase RK54_RS10840 PF01435 Peptidase family M48 RK54_RS10845 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RK54_RS10850 PF00266 Aminotransferase class-V RK54_RS10855 PF04239 Protein of unknown function (DUF421) RK54_RS10860 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding RK54_RS10860 PF18381 YcaO cyclodehydratase C-terminal domain RK54_RS10865 PF01226 Formate/nitrite transporter RK54_RS10870 PF01228 Glycine radical RK54_RS10870 PF02901 Pyruvate formate lyase-like RK54_RS10875 PF11047 Salmonella outer protein D RK54_RS10885 PF04055 Radical SAM superfamily RK54_RS10890 PF13520 Amino acid permease RK54_RS10895 PF07690 Major Facilitator Superfamily RK54_RS10900 PF04976 DMSO reductase anchor subunit (DmsC) RK54_RS10905 PF12800 4Fe-4S binding domain RK54_RS10905 PF13247 4Fe-4S dicluster domain RK54_RS10910 PF01568 Molydopterin dinucleotide binding domain RK54_RS10910 PF00384 Molybdopterin oxidoreductase RK54_RS10910 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS10915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RK54_RS10915 PF02403 Seryl-tRNA synthetase N-terminal domain RK54_RS10920 PF12002 MgsA AAA+ ATPase C terminal RK54_RS10920 PF00004 ATPase family associated with various cellular activities (AAA) RK54_RS10920 PF16193 AAA C-terminal domain RK54_RS10925 PF03548 Outer membrane lipoprotein carrier protein LolA RK54_RS10930 PF17854 FtsK alpha domain RK54_RS10930 PF01580 FtsK/SpoIIIE family RK54_RS10930 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RK54_RS10930 PF09397 Ftsk gamma domain RK54_RS10935 PF01037 Lrp/AsnC ligand binding domain RK54_RS10945 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS10950 PF00005 ABC transporter RK54_RS10950 PF00664 ABC transporter transmembrane region RK54_RS10955 PF00664 ABC transporter transmembrane region RK54_RS10955 PF00005 ABC transporter RK54_RS10960 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RK54_RS10970 PF01176 Translation initiation factor 1A / IF-1 RK54_RS10975 PF03466 LysR substrate binding domain RK54_RS10975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS10980 PF05726 Pirin C-terminal cupin domain RK54_RS10980 PF02678 Pirin RK54_RS10985 PF00857 Isochorismatase family RK54_RS11010 PF01797 Transposase IS200 like RK54_RS11020 PF00004 ATPase family associated with various cellular activities (AAA) RK54_RS11020 PF07724 AAA domain (Cdc48 subfamily) RK54_RS11020 PF17871 AAA lid domain RK54_RS11020 PF02861 Clp amino terminal domain, pathogenicity island component RK54_RS11020 PF10431 C-terminal, D2-small domain, of ClpB protein RK54_RS11025 PF02617 ATP-dependent Clp protease adaptor protein ClpS RK54_RS11030 PF00313 'Cold-shock' DNA-binding domain RK54_RS11040 PF12704 MacB-like periplasmic core domain RK54_RS11040 PF02687 FtsX-like permease family RK54_RS11040 PF00005 ABC transporter RK54_RS11045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RK54_RS11050 PF04393 Protein of unknown function (DUF535) RK54_RS11055 PF11398 Protein of unknown function (DUF2813) RK54_RS11065 PF03956 Lysine exporter LysO RK54_RS11070 PF03063 Prismane/CO dehydrogenase family RK54_RS11075 PF00970 Oxidoreductase FAD-binding domain RK54_RS11075 PF00175 Oxidoreductase NAD-binding domain RK54_RS11075 PF00111 2Fe-2S iron-sulfur cluster binding domain RK54_RS11080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK54_RS11080 PF00205 Thiamine pyrophosphate enzyme, central domain RK54_RS11080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK54_RS11085 PF01212 Beta-eliminating lyase RK54_RS11090 PF13460 NAD(P)H-binding RK54_RS11090 PF11066 Protein of unknown function (DUF2867) RK54_RS11095 PF01370 NAD dependent epimerase/dehydratase family RK54_RS11100 PF01510 N-acetylmuramoyl-L-alanine amidase RK54_RS11105 PF01906 Putative heavy-metal-binding RK54_RS11110 PF12883 Protein of unknown function (DUF3828) RK54_RS11115 PF00005 ABC transporter RK54_RS11120 PF00497 Bacterial extracellular solute-binding proteins, family 3 RK54_RS11125 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS11130 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS11135 PF00497 Bacterial extracellular solute-binding proteins, family 3 RK54_RS11155 PF03611 PTS system sugar-specific permease component RK54_RS11160 PF05958 tRNA (Uracil-5-)-methyltransferase RK54_RS11165 PF10767 Protein of unknown function (DUF2593) RK54_RS11170 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS11175 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS11180 PF08402 TOBE domain RK54_RS11180 PF00005 ABC transporter RK54_RS11185 PF13416 Bacterial extracellular solute-binding protein RK54_RS11190 PF10722 Putative bacterial sensory transduction regulator RK54_RS11195 PF08443 RimK-like ATP-grasp domain RK54_RS11195 PF18030 RimK PreATP-grasp domain RK54_RS11205 PF07214 Protein of unknown function (DUF1418) RK54_RS11210 PF00462 Glutaredoxin RK54_RS11215 PF11045 Putative inner membrane protein of Enterobacteriaceae RK54_RS11225 PF06826 Predicted Permease Membrane Region RK54_RS11225 PF02080 TrkA-C domain RK54_RS11235 PF00440 Bacterial regulatory proteins, tetR family RK54_RS11240 PF07690 Major Facilitator Superfamily RK54_RS11250 PF07690 Major Facilitator Superfamily RK54_RS11255 PF01569 PAP2 superfamily RK54_RS11260 PF00455 DeoR C terminal sensor domain RK54_RS11260 PF08220 DeoR-like helix-turn-helix domain RK54_RS11265 PF07943 Penicillin-binding protein 5, C-terminal domain RK54_RS11265 PF00768 D-alanyl-D-alanine carboxypeptidase RK54_RS11270 PF13417 Glutathione S-transferase, N-terminal domain RK54_RS11270 PF00043 Glutathione S-transferase, C-terminal domain RK54_RS11275 PF07995 Glucose / Sorbosone dehydrogenase RK54_RS11290 PF03466 LysR substrate binding domain RK54_RS11290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS11305 PF02770 Acyl-CoA dehydrogenase, middle domain RK54_RS11305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RK54_RS11305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RK54_RS11315 PF00766 Electron transfer flavoprotein FAD-binding domain RK54_RS11315 PF01012 Electron transfer flavoprotein domain RK54_RS11320 PF01012 Electron transfer flavoprotein domain RK54_RS11325 PF03328 HpcH/HpaI aldolase/citrate lyase family RK54_RS11330 PF10799 Biofilm formation protein (YliH/bssR) RK54_RS11335 PF04055 Radical SAM superfamily RK54_RS11335 PF18693 TRAM domain RK54_RS11335 PF00919 Uncharacterized protein family UPF0004 RK54_RS11340 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS11340 PF12911 N-terminal TM domain of oligopeptide transport permease C RK54_RS11345 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS11350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK54_RS11355 PF00005 ABC transporter RK54_RS11355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK54_RS11360 PF01112 Asparaginase RK54_RS11365 PF00994 Probable molybdopterin binding domain RK54_RS11365 PF03453 MoeA N-terminal region (domain I and II) RK54_RS11365 PF03454 MoeA C-terminal region (domain IV) RK54_RS11370 PF00899 ThiF family RK54_RS11375 PF04055 Radical SAM superfamily RK54_RS11380 PF02901 Pyruvate formate lyase-like RK54_RS11380 PF01228 Glycine radical RK54_RS11390 PF07350 Protein of unknown function (DUF1479) RK54_RS11400 PF00005 ABC transporter RK54_RS11400 PF12848 ABC transporter RK54_RS11405 PF03734 L,D-transpeptidase catalytic domain RK54_RS11405 PF17969 L,D-transpeptidase C-terminal domain RK54_RS11410 PF03600 Citrate transporter RK54_RS11415 PF02742 Iron dependent repressor, metal binding and dimerisation domain RK54_RS11415 PF01325 Iron dependent repressor, N-terminal DNA binding domain RK54_RS11425 PF00884 Sulfatase RK54_RS11430 PF13505 Outer membrane protein beta-barrel domain RK54_RS11435 PF00892 EamA-like transporter family RK54_RS11440 PF00210 Ferritin-like domain RK54_RS11450 PF00497 Bacterial extracellular solute-binding proteins, family 3 RK54_RS11455 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS11460 PF00005 ABC transporter RK54_RS11465 PF00924 Mechanosensitive ion channel RK54_RS11470 PF05971 RNA methyltransferase RK54_RS11475 PF01258 Prokaryotic dksA/traR C4-type zinc finger RK54_RS11480 PF07338 Protein of unknown function (DUF1471) RK54_RS11485 PF02885 Glycosyl transferase family, helical bundle domain RK54_RS11490 PF13307 Helicase C-terminal domain RK54_RS11490 PF06733 DEAD_2 RK54_RS11495 PF00271 Helicase conserved C-terminal domain RK54_RS11495 PF00270 DEAD/DEAH box helicase RK54_RS11500 PF09209 Tetracyclin repressor-like, C-terminal domain RK54_RS11500 PF00440 Bacterial regulatory proteins, tetR family RK54_RS11505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RK54_RS11510 PF00005 ABC transporter RK54_RS11525 PF11076 Putative inner membrane protein YbhQ RK54_RS11530 PF03372 Endonuclease/Exonuclease/phosphatase family RK54_RS11535 PF13091 PLD-like domain RK54_RS11540 PF03706 Lysylphosphatidylglycerol synthase TM region RK54_RS11565 PF01027 Inhibitor of apoptosis-promoting Bax1 RK54_RS11570 PF02391 MoaE protein RK54_RS11575 PF02597 ThiS family RK54_RS11580 PF01967 MoaC family RK54_RS11585 PF00994 Probable molybdopterin binding domain RK54_RS11590 PF06463 Molybdenum Cofactor Synthesis C RK54_RS11590 PF04055 Radical SAM superfamily RK54_RS11595 PF01933 Uncharacterised protein family UPF0052 RK54_RS11600 PF14496 C-terminal novel E3 ligase, LRR-interacting RK54_RS11600 PF12468 Type III secretion system leucine rich repeat protein RK54_RS11610 PF17757 UvrB interaction domain RK54_RS11610 PF12344 Ultra-violet resistance protein B RK54_RS11610 PF02151 UvrB/uvrC motif RK54_RS11610 PF04851 Type III restriction enzyme, res subunit RK54_RS11610 PF00271 Helicase conserved C-terminal domain RK54_RS11625 PF08241 Methyltransferase domain RK54_RS11630 PF00155 Aminotransferase class I and II RK54_RS11635 PF04055 Radical SAM superfamily RK54_RS11635 PF06968 Biotin and Thiamin Synthesis associated domain RK54_RS11640 PF00202 Aminotransferase class-III RK54_RS11645 PF01161 Phosphatidylethanolamine-binding protein RK54_RS11650 PF00221 Aromatic amino acid lyase RK54_RS11655 PF01175 Urocanase Rossmann-like domain RK54_RS11655 PF17392 Urocanase C-terminal domain RK54_RS11655 PF17391 Urocanase N-terminal domain RK54_RS11660 PF07702 UTRA domain RK54_RS11660 PF00392 Bacterial regulatory proteins, gntR family RK54_RS11665 PF00491 Arginase family RK54_RS11670 PF01979 Amidohydrolase family RK54_RS11675 PF01095 Pectinesterase RK54_RS11680 PF10282 Lactonase, 7-bladed beta-propeller RK54_RS11690 PF00005 ABC transporter RK54_RS11690 PF03459 TOBE domain RK54_RS11695 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS11705 PF10766 Multidrug efflux pump-associated protein AcrZ RK54_RS11710 PF03459 TOBE domain RK54_RS11710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS11715 PF00005 ABC transporter RK54_RS11725 PF16363 GDP-mannose 4,6 dehydratase RK54_RS11730 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RK54_RS11730 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RK54_RS11735 PF00288 GHMP kinases N terminal domain RK54_RS11735 PF10509 Galactokinase galactose-binding signature RK54_RS11735 PF08544 GHMP kinases C terminal RK54_RS11740 PF01263 Aldose 1-epimerase RK54_RS11750 PF00300 Histidine phosphatase superfamily (branch 1) RK54_RS11755 PF00005 ABC transporter RK54_RS11760 PF01032 FecCD transport family RK54_RS11765 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase RK54_RS11770 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit RK54_RS11775 PF02436 Conserved carboxylase domain RK54_RS11775 PF00682 HMGL-like RK54_RS11775 PF00364 Biotin-requiring enzyme RK54_RS11780 PF04277 Oxaloacetate decarboxylase, gamma chain RK54_RS11785 PF03600 Citrate transporter RK54_RS11785 PF02080 TrkA-C domain RK54_RS11790 PF03466 LysR substrate binding domain RK54_RS11790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS11795 PF03466 LysR substrate binding domain RK54_RS11795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS11800 PF05681 Fumarate hydratase (Fumerase) RK54_RS11805 PF05683 Fumarase C-terminus RK54_RS11805 PF05681 Fumarate hydratase (Fumerase) RK54_RS11810 PF00793 DAHP synthetase I family RK54_RS11815 PF13985 YbgS-like protein RK54_RS11820 PF01545 Cation efflux family RK54_RS11825 PF04973 Nicotinamide mononucleotide transporter RK54_RS11830 PF02445 Quinolinate synthetase A protein RK54_RS11865 PF16331 TolA binding protein trimerisation RK54_RS11865 PF13174 Tetratricopeptide repeat RK54_RS11870 PF00691 OmpA family RK54_RS11875 PF04052 TolB amino-terminal domain RK54_RS11875 PF07676 WD40-like Beta Propeller Repeat RK54_RS11880 PF06519 TolA C-terminal RK54_RS11885 PF02472 Biopolymer transport protein ExbD/TolR RK54_RS11890 PF01618 MotA/TolQ/ExbB proton channel family RK54_RS11895 PF03061 Thioesterase superfamily RK54_RS11900 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) RK54_RS11905 PF08173 Membrane bound YbgT-like protein RK54_RS11910 PF02322 Cytochrome bd terminal oxidase subunit II RK54_RS11915 PF01654 Cytochrome bd terminal oxidase subunit I RK54_RS11925 PF00549 CoA-ligase RK54_RS11925 PF02629 CoA binding domain RK54_RS11930 PF00549 CoA-ligase RK54_RS11930 PF08442 ATP-grasp domain RK54_RS11935 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RK54_RS11935 PF00364 Biotin-requiring enzyme RK54_RS11935 PF02817 e3 binding domain RK54_RS11940 PF00676 Dehydrogenase E1 component RK54_RS11940 PF02779 Transketolase, pyrimidine binding domain RK54_RS11940 PF16078 2-oxoglutarate dehydrogenase N-terminus RK54_RS11940 PF16870 2-oxoglutarate dehydrogenase C-terminal RK54_RS11945 PF13085 2Fe-2S iron-sulfur cluster binding domain RK54_RS11950 PF00890 FAD binding domain RK54_RS11950 PF02910 Fumarate reductase flavoprotein C-term RK54_RS11955 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RK54_RS11960 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RK54_RS11975 PF00285 Citrate synthase, C-terminal domain RK54_RS11980 PF05145 Transition state regulatory protein AbrB RK54_RS11985 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RK54_RS11985 PF06827 Zinc finger found in FPG and IleRS RK54_RS11985 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RK54_RS12005 PF17994 Galactofuranosyltransferase 2 N-terminal RK54_RS12010 PF00005 ABC transporter RK54_RS12015 PF01061 ABC-2 type transporter RK54_RS12030 PF03275 UDP-galactopyranose mutase RK54_RS12050 PF00589 Phage integrase family RK54_RS12060 PF03746 LamB/YcsF family RK54_RS12065 PF02626 Carboxyltransferase domain, subdomain A and B RK54_RS12070 PF02682 Carboxyltransferase domain, subdomain C and D RK54_RS12075 PF01784 NIF3 (NGG1p interacting factor 3) RK54_RS12085 PF00854 POT family RK54_RS12090 PF00875 DNA photolyase RK54_RS12090 PF03441 FAD binding domain of DNA photolyase RK54_RS12095 PF10725 Protein of unknown function (DUF2517) RK54_RS12100 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) RK54_RS12105 PF03814 Potassium-transporting ATPase A subunit RK54_RS12115 PF02669 K+-transporting ATPase, c chain RK54_RS12120 PF13492 GAF domain RK54_RS12120 PF13493 Domain of unknown function (DUF4118) RK54_RS12120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS12120 PF02702 Osmosensitive K+ channel His kinase sensor domain RK54_RS12120 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS12125 PF00486 Transcriptional regulatory protein, C terminal RK54_RS12125 PF00072 Response regulator receiver domain RK54_RS12130 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RK54_RS12130 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RK54_RS12130 PF01276 Orn/Lys/Arg decarboxylase, major domain RK54_RS12135 PF13520 Amino acid permease RK54_RS12145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RK54_RS12145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RK54_RS12145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RK54_RS12145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RK54_RS12150 PF03925 SeqA protein C-terminal domain RK54_RS12150 PF17206 SeqA protein N-terminal domain RK54_RS12155 PF12697 Alpha/beta hydrolase family RK54_RS12160 PF01402 Ribbon-helix-helix protein, copG family RK54_RS12165 PF00258 Flavodoxin RK54_RS12170 PF01475 Ferric uptake regulator family RK54_RS12175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS12175 PF03466 LysR substrate binding domain RK54_RS12180 PF00890 FAD binding domain RK54_RS12180 PF14537 Cytochrome c3 RK54_RS12190 PF07690 Major Facilitator Superfamily RK54_RS12195 PF13982 YbfN-like lipoprotein RK54_RS12200 PF03573 outer membrane porin, OprD family RK54_RS12210 PF00749 tRNA synthetases class I (E and Q), catalytic domain RK54_RS12210 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RK54_RS12215 PF02378 Phosphotransferase system, EIIC RK54_RS12215 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK54_RS12215 PF00367 phosphotransferase system, EIIB RK54_RS12220 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RK54_RS12225 PF01979 Amidohydrolase family RK54_RS12230 PF01047 MarR family RK54_RS12230 PF00480 ROK family RK54_RS12235 PF13344 Haloacid dehalogenase-like hydrolase RK54_RS12240 PF13537 Glutamine amidotransferase domain RK54_RS12240 PF00733 Asparagine synthase RK54_RS12285 PF01494 FAD binding domain RK54_RS12290 PF00919 Uncharacterized protein family UPF0004 RK54_RS12290 PF01938 TRAM domain RK54_RS12290 PF04055 Radical SAM superfamily RK54_RS12295 PF02562 PhoH-like protein RK54_RS12300 PF02130 Uncharacterized protein family UPF0054 RK54_RS12305 PF03471 Transporter associated domain RK54_RS12305 PF00571 CBS domain RK54_RS12310 PF00795 Carbon-nitrogen hydrolase RK54_RS12315 PF00497 Bacterial extracellular solute-binding proteins, family 3 RK54_RS12320 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS12325 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS12330 PF00005 ABC transporter RK54_RS12335 PF01156 Inosine-uridine preferring nucleoside hydrolase RK54_RS12345 PF00012 Hsp70 protein RK54_RS12355 PF06889 Protein of unknown function (DUF1266) RK54_RS12365 PF06889 Protein of unknown function (DUF1266) RK54_RS12375 PF07295 Zinc-ribbon containing domain RK54_RS12380 PF02954 Bacterial regulatory protein, Fis family RK54_RS12380 PF00158 Sigma-54 interaction domain RK54_RS12380 PF00989 PAS fold RK54_RS12385 PF03812 2-keto-3-deoxygluconate permease RK54_RS12390 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RK54_RS12400 PF08264 Anticodon-binding domain of tRNA RK54_RS12400 PF00133 tRNA synthetases class I (I, L, M and V) RK54_RS12400 PF13603 Leucyl-tRNA synthetase, Domain 2 RK54_RS12405 PF04390 Lipopolysaccharide-assembly RK54_RS12410 PF14840 Processivity clamp loader gamma complex DNA pol III C-term RK54_RS12410 PF06144 DNA polymerase III, delta subunit RK54_RS12415 PF01467 Cytidylyltransferase-like RK54_RS12420 PF00155 Aminotransferase class I and II RK54_RS12425 PF00300 Histidine phosphatase superfamily (branch 1) RK54_RS12435 PF02590 Predicted SPOUT methyltransferase RK54_RS12440 PF03717 Penicillin-binding Protein dimerisation domain RK54_RS12440 PF00905 Penicillin binding protein transpeptidase domain RK54_RS12445 PF01098 Cell cycle protein RK54_RS12450 PF05036 Sporulation related domain RK54_RS12450 PF03330 Lytic transglycolase RK54_RS12455 PF00768 D-alanyl-D-alanine carboxypeptidase RK54_RS12455 PF07943 Penicillin-binding protein 5, C-terminal domain RK54_RS12460 PF04359 Protein of unknown function (DUF493) RK54_RS12465 PF03099 Biotin/lipoate A/B protein ligase family RK54_RS12470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS12470 PF03466 LysR substrate binding domain RK54_RS12475 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RK54_RS12475 PF04055 Radical SAM superfamily RK54_RS12480 PF02416 mttA/Hcf106 family RK54_RS12485 PF00795 Carbon-nitrogen hydrolase RK54_RS12490 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RK54_RS12495 PF00313 'Cold-shock' DNA-binding domain RK54_RS12500 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP RK54_RS12510 PF03606 C4-dicarboxylate anaerobic carrier RK54_RS12515 PF00072 Response regulator receiver domain RK54_RS12515 PF12431 Transcriptional regulator RK54_RS12520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS12520 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RK54_RS12520 PF17203 Single cache domain 3 RK54_RS12520 PF00989 PAS fold RK54_RS12525 PF08218 Citrate lyase ligase C-terminal domain RK54_RS12530 PF06857 Malonate decarboxylase delta subunit (MdcD) RK54_RS12535 PF03328 HpcH/HpaI aldolase/citrate lyase family RK54_RS12540 PF04223 Citrate lyase, alpha subunit (CitF) RK54_RS12545 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase RK54_RS12550 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase RK54_RS12555 PF00939 Sodium:sulfate symporter transmembrane region RK54_RS12560 PF00445 Ribonuclease T2 family RK54_RS12570 PF01272 Transcription elongation factor, GreA/GreB, C-term RK54_RS12570 PF14760 Rnk N-terminus RK54_RS12575 PF13823 Alcohol dehydrogenase GroES-associated RK54_RS12575 PF00107 Zinc-binding dehydrogenase RK54_RS12575 PF08240 Alcohol dehydrogenase GroES-like domain RK54_RS12580 PF00582 Universal stress protein family RK54_RS12590 PF13247 4Fe-4S dicluster domain RK54_RS12595 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS12595 PF00384 Molybdopterin oxidoreductase RK54_RS12595 PF01568 Molydopterin dinucleotide binding domain RK54_RS12605 PF13192 Thioredoxin domain RK54_RS12605 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS12610 PF00578 AhpC/TSA family RK54_RS12610 PF10417 C-terminal domain of 1-Cys peroxiredoxin RK54_RS12615 PF13098 Thioredoxin-like domain RK54_RS12625 PF03466 LysR substrate binding domain RK54_RS12625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS12630 PF11922 Domain of unknown function (DUF3440) RK54_RS12630 PF01507 Phosphoadenosine phosphosulfate reductase family RK54_RS12635 PF02195 ParB-like nuclease domain RK54_RS12640 PF00155 Aminotransferase class I and II RK54_RS12645 PF00465 Iron-containing alcohol dehydrogenase RK54_RS12650 PF04328 Selenoprotein, putative RK54_RS12655 PF02554 Carbon starvation protein CstA RK54_RS12655 PF13722 5TM C-terminal transporter carbon starvation CstA RK54_RS12660 PF03061 Thioesterase superfamily RK54_RS12670 PF00857 Isochorismatase family RK54_RS12670 PF00550 Phosphopantetheine attachment site RK54_RS12675 PF13193 AMP-binding enzyme C-terminal domain RK54_RS12675 PF00501 AMP-binding enzyme RK54_RS12680 PF00425 chorismate binding enzyme RK54_RS12685 PF01497 Periplasmic binding protein RK54_RS12690 PF05977 Transmembrane secretion effector RK54_RS12695 PF01032 FecCD transport family RK54_RS12700 PF01032 FecCD transport family RK54_RS12705 PF00005 ABC transporter RK54_RS12710 PF02706 Chain length determinant protein RK54_RS12715 PF00975 Thioesterase domain RK54_RS12715 PF00501 AMP-binding enzyme RK54_RS12715 PF00668 Condensation domain RK54_RS12715 PF13193 AMP-binding enzyme C-terminal domain RK54_RS12715 PF00550 Phosphopantetheine attachment site RK54_RS12720 PF03621 MbtH-like protein RK54_RS12725 PF00756 Putative esterase RK54_RS12725 PF11806 Domain of unknown function (DUF3327) RK54_RS12730 PF07715 TonB-dependent Receptor Plug Domain RK54_RS12730 PF00593 TonB dependent receptor RK54_RS12735 PF01648 4'-phosphopantetheinyl transferase superfamily RK54_RS12735 PF17837 4'-phosphopantetheinyl transferase N-terminal domain RK54_RS12740 PF04107 Glutamate-cysteine ligase family 2(GCS2) RK54_RS12745 PF06643 Protein of unknown function (DUF1158) RK54_RS12750 PF12833 Helix-turn-helix domain RK54_RS12755 PF00440 Bacterial regulatory proteins, tetR family RK54_RS12755 PF16295 Tetracyclin repressor-like, C-terminal domain RK54_RS12760 PF04237 YjbR RK54_RS12765 PF00881 Nitroreductase family RK54_RS12775 PF03830 PTS system sorbose subfamily IIB component RK54_RS12785 PF03613 PTS system mannose/fructose/sorbose family IID component RK54_RS12795 PF01380 SIS domain RK54_RS12800 PF03610 PTS system fructose IIA component RK54_RS12800 PF00874 PRD domain RK54_RS12800 PF00158 Sigma-54 interaction domain RK54_RS12805 PF00657 GDSL-like Lipase/Acylhydrolase RK54_RS12805 PF03797 Autotransporter beta-domain RK54_RS12815 PF00924 Mechanosensitive ion channel RK54_RS12820 PF00324 Amino acid permease RK54_RS12830 PF04224 Protein of unknown function, DUF417 RK54_RS12835 PF07338 Protein of unknown function (DUF1471) RK54_RS12845 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS12845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RK54_RS12850 PF12833 Helix-turn-helix domain RK54_RS12850 PF12852 Cupin RK54_RS12855 PF00873 AcrB/AcrD/AcrF family RK54_RS12860 PF00672 HAMP domain RK54_RS12860 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS12860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS12870 PF04138 GtrA-like protein RK54_RS12875 PF00535 Glycosyl transferase family 2 RK54_RS12890 PF00589 Phage integrase family RK54_RS12905 PF00196 Bacterial regulatory proteins, luxR family RK54_RS12920 PF00196 Bacterial regulatory proteins, luxR family RK54_RS12920 PF00072 Response regulator receiver domain RK54_RS12925 PF00419 Fimbrial protein RK54_RS12930 PF00419 Fimbrial protein RK54_RS12935 PF13953 PapC C-terminal domain RK54_RS12935 PF13954 PapC N-terminal domain RK54_RS12935 PF00577 Outer membrane usher protein RK54_RS12940 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS12940 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS12950 PF00419 Fimbrial protein RK54_RS12960 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RK54_RS12960 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RK54_RS12970 PF04307 LexA-binding, inner membrane-associated putative hydrolase RK54_RS12985 PF09190 DALR domain RK54_RS12985 PF01406 tRNA synthetases class I (C) catalytic domain RK54_RS12990 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RK54_RS12995 PF12850 Calcineurin-like phosphoesterase superfamily domain RK54_RS13005 PF00731 AIR carboxylase RK54_RS13010 PF02222 ATP-grasp domain RK54_RS13010 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RK54_RS13015 PF00696 Amino acid kinase family RK54_RS13020 PF11392 Protein of unknown function (DUF2877) RK54_RS13025 PF06545 Protein of unknown function (DUF1116) RK54_RS13030 PF02629 CoA binding domain RK54_RS13030 PF00549 CoA-ligase RK54_RS13035 PF02615 Malate/L-lactate dehydrogenase RK54_RS13040 PF01546 Peptidase family M20/M25/M40 RK54_RS13045 PF07883 Cupin domain RK54_RS13045 PF05899 Protein of unknown function (DUF861) RK54_RS13050 PF02595 Glycerate kinase family RK54_RS13055 PF00860 Permease family RK54_RS13060 PF01979 Amidohydrolase family RK54_RS13065 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RK54_RS13075 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RK54_RS13075 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RK54_RS13080 PF01261 Xylose isomerase-like TIM barrel RK54_RS13085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK54_RS13085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK54_RS13085 PF00205 Thiamine pyrophosphate enzyme, central domain RK54_RS13090 PF09339 IclR helix-turn-helix domain RK54_RS13090 PF01614 Bacterial transcriptional regulator RK54_RS13095 PF04115 Ureidoglycolate lyase RK54_RS13100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS13100 PF03466 LysR substrate binding domain RK54_RS13110 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS13115 PF09383 NIL domain RK54_RS13115 PF00005 ABC transporter RK54_RS13120 PF03180 NLPA lipoprotein RK54_RS13135 PF00005 ABC transporter RK54_RS13140 PF13472 GDSL-like Lipase/Acylhydrolase family RK54_RS13145 PF00106 short chain dehydrogenase RK54_RS13150 PF00085 Thioredoxin RK54_RS13155 PF03649 Uncharacterised protein family (UPF0014) RK54_RS13160 PF00005 ABC transporter RK54_RS13165 PF16200 C-terminal region of band_7 RK54_RS13165 PF01145 SPFH domain / Band 7 family RK54_RS13170 PF01957 NfeD-like C-terminal, partner-binding RK54_RS13175 PF13411 MerR HTH family regulatory protein RK54_RS13180 PF00403 Heavy-metal-associated domain RK54_RS13190 PF01963 TraB family RK54_RS13195 PF04073 Aminoacyl-tRNA editing domain RK54_RS13200 PF00149 Calcineurin-like phosphoesterase RK54_RS13200 PF02872 5'-nucleotidase, C-terminal domain RK54_RS13205 PF07690 Major Facilitator Superfamily RK54_RS13210 PF00999 Sodium/hydrogen exchanger family RK54_RS13210 PF02254 TrkA-N domain RK54_RS13215 PF00294 pfkB family carbohydrate kinase RK54_RS13225 PF00762 Ferrochelatase RK54_RS13235 PF05191 Adenylate kinase, active site lid RK54_RS13245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS13245 PF00183 Hsp90 protein RK54_RS13250 PF02132 RecR protein RK54_RS13250 PF13662 Toprim domain RK54_RS13255 PF02575 YbaB/EbfC DNA-binding family RK54_RS13260 PF12169 DNA polymerase III subunits gamma and tau domain III RK54_RS13260 PF12170 DNA polymerase III tau subunit V interacting with alpha RK54_RS13260 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RK54_RS13265 PF00156 Phosphoribosyl transferase domain RK54_RS13275 PF04304 Protein of unknown function (DUF454) RK54_RS13280 PF07445 Primosomal replication protein priC RK54_RS13285 PF10689 Protein of unknown function (DUF2496) RK54_RS13300 PF00924 Mechanosensitive ion channel RK54_RS13300 PF12795 Mechanosensitive ion channel porin domain RK54_RS13300 PF12794 Mechanosensitive ion channel inner membrane domain 1 RK54_RS13305 PF00440 Bacterial regulatory proteins, tetR family RK54_RS13305 PF08361 MAATS-type transcriptional repressor, C-terminal region RK54_RS13310 PF00529 HlyD membrane-fusion protein of T1SS RK54_RS13310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RK54_RS13315 PF00873 AcrB/AcrD/AcrF family RK54_RS13320 PF10757 Biofilm formation regulator YbaJ RK54_RS13325 PF05321 Haemolysin expression modulating protein RK54_RS13330 PF12464 Maltose acetyltransferase RK54_RS13330 PF14602 Hexapeptide repeat of succinyl-transferase RK54_RS13335 PF10777 Inner membrane protein YlaC RK54_RS13340 PF00444 Ribosomal protein L36 RK54_RS13345 PF01197 Ribosomal protein L31 RK54_RS13350 PF12792 CSS motif domain associated with EAL RK54_RS13350 PF00563 EAL domain RK54_RS13360 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RK54_RS13365 PF09619 Type III secretion system lipoprotein chaperone (YscW) RK54_RS13375 PF00909 Ammonium Transporter Family RK54_RS13380 PF00543 Nitrogen regulatory protein P-II RK54_RS13390 PF00664 ABC transporter transmembrane region RK54_RS13390 PF00005 ABC transporter RK54_RS13395 PF00664 ABC transporter transmembrane region RK54_RS13395 PF00005 ABC transporter RK54_RS13400 PF01037 Lrp/AsnC ligand binding domain RK54_RS13400 PF13404 AsnC-type helix-turn-helix domain RK54_RS13415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK54_RS13415 PF12793 Sugar transport-related sRNA regulator N-term RK54_RS13420 PF06508 Queuosine biosynthesis protein QueC RK54_RS13435 PF13145 PPIC-type PPIASE domain RK54_RS13440 PF00216 Bacterial DNA-binding protein RK54_RS13445 PF05362 Lon protease (S16) C-terminal proteolytic domain RK54_RS13445 PF00004 ATPase family associated with various cellular activities (AAA) RK54_RS13445 PF02190 ATP-dependent protease La (LON) substrate-binding domain RK54_RS13450 PF07724 AAA domain (Cdc48 subfamily) RK54_RS13450 PF10431 C-terminal, D2-small domain, of ClpB protein RK54_RS13450 PF06689 ClpX C4-type zinc finger RK54_RS13455 PF00574 Clp protease RK54_RS13460 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RK54_RS13460 PF05698 Bacterial trigger factor protein (TF) C-terminus RK54_RS13460 PF05697 Bacterial trigger factor protein (TF) RK54_RS13470 PF01722 BolA-like protein RK54_RS13480 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RK54_RS13480 PF03923 Uncharacterized lipoprotein RK54_RS13485 PF07690 Major Facilitator Superfamily RK54_RS13490 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RK54_RS13490 PF06481 COX Aromatic Rich Motif RK54_RS13495 PF00115 Cytochrome C and Quinol oxidase polypeptide I RK54_RS13500 PF00510 Cytochrome c oxidase subunit III RK54_RS13505 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RK54_RS13510 PF01040 UbiA prenyltransferase family RK54_RS13525 PF07690 Major Facilitator Superfamily RK54_RS13530 PF04461 Protein of unknown function (DUF520) RK54_RS13535 PF08546 Ketopantoate reductase PanE/ApbA C terminal RK54_RS13535 PF02558 Ketopantoate reductase PanE/ApbA RK54_RS13540 PF01965 DJ-1/PfpI family RK54_RS13550 PF00266 Aminotransferase class-V RK54_RS13555 PF00392 Bacterial regulatory proteins, gntR family RK54_RS13555 PF07702 UTRA domain RK54_RS13560 PF01547 Bacterial extracellular solute-binding protein RK54_RS13565 PF08402 TOBE domain RK54_RS13565 PF00005 ABC transporter RK54_RS13570 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS13575 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS13580 PF02568 Thiamine biosynthesis protein (ThiI) RK54_RS13580 PF02926 THUMP domain RK54_RS13585 PF02609 Exonuclease VII small subunit RK54_RS13590 PF00348 Polyprenyl synthetase RK54_RS13595 PF02779 Transketolase, pyrimidine binding domain RK54_RS13595 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RK54_RS13595 PF02780 Transketolase, C-terminal domain RK54_RS13600 PF00248 Aldo/keto reductase family RK54_RS13605 PF04608 Phosphatidylglycerophosphatase A RK54_RS13610 PF02769 AIR synthase related protein, C-terminal domain RK54_RS13610 PF00586 AIR synthase related protein, N-terminal domain RK54_RS13615 PF01029 NusB family RK54_RS13620 PF00885 6,7-dimethyl-8-ribityllumazine synthase RK54_RS13625 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RK54_RS13625 PF01872 RibD C-terminal domain RK54_RS13630 PF03477 ATP cone domain RK54_RS13635 PF11622 Protein of unknown function (DUF3251) RK54_RS13640 PF03502 Nucleoside-specific channel-forming protein, Tsx RK54_RS13655 PF01844 HNH endonuclease RK54_RS13670 PF07549 SecD/SecF GG Motif RK54_RS13670 PF02355 Protein export membrane protein RK54_RS13675 PF07549 SecD/SecF GG Motif RK54_RS13675 PF02355 Protein export membrane protein RK54_RS13675 PF13721 SecD export protein N-terminal TM region RK54_RS13680 PF02699 Preprotein translocase subunit RK54_RS13685 PF01702 Queuine tRNA-ribosyltransferase RK54_RS13695 PF02547 Queuosine biosynthesis protein RK54_RS13700 PF04336 Acyl carrier protein phosphodiesterase RK54_RS13705 PF10417 C-terminal domain of 1-Cys peroxiredoxin RK54_RS13705 PF00578 AhpC/TSA family RK54_RS13710 PF02903 Alpha amylase, N-terminal ig-like domain RK54_RS13710 PF00128 Alpha amylase, catalytic domain RK54_RS13715 PF00324 Amino acid permease RK54_RS13720 PF05525 Branched-chain amino acid transport protein RK54_RS13725 PF00989 PAS fold RK54_RS13725 PF11808 Phosphate regulon sensor protein PhoR RK54_RS13725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS13725 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS13730 PF00486 Transcriptional regulatory protein, C terminal RK54_RS13730 PF00072 Response regulator receiver domain RK54_RS13735 PF00149 Calcineurin-like phosphoesterase RK54_RS13735 PF12320 Type 5 capsule protein repressor C-terminal domain RK54_RS13740 PF13476 AAA domain RK54_RS13745 PF07690 Major Facilitator Superfamily RK54_RS13750 PF00480 ROK family RK54_RS13755 PF04381 Putative exonuclease, RdgC RK54_RS13760 PF06865 Pyrimidine/purine nucleoside phosphorylase RK54_RS13765 PF07302 AroM protein RK54_RS13770 PF16362 YaiA protein RK54_RS13775 PF01202 Shikimate kinase RK54_RS13780 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RK54_RS13785 PF03807 NADP oxidoreductase coenzyme F420-dependent RK54_RS13785 PF14748 Pyrroline-5-carboxylate reductase dimerisation RK54_RS13790 PF05230 MASE2 domain RK54_RS13790 PF00990 Diguanylate cyclase, GGDEF domain RK54_RS13795 PF07769 psiF repeat RK54_RS13800 PF10796 Sigma-S stabilisation anti-adaptor protein RK54_RS13805 PF07690 Major Facilitator Superfamily RK54_RS13815 PF01820 D-ala D-ala ligase N-terminus RK54_RS13815 PF07478 D-ala D-ala ligase C-terminus RK54_RS13820 PF10953 Protein of unknown function (DUF2754) RK54_RS13825 PF10954 Protein of unknown function (DUF2755) RK54_RS13830 PF07759 Protein of unknown function (DUF1615) RK54_RS13835 PF05992 SbmA/BacA-like family RK54_RS13845 PF00144 Beta-lactamase RK54_RS13850 PF15977 Winged helix-turn-helix DNA binding RK54_RS13855 PF03797 Autotransporter beta-domain RK54_RS13860 PF00490 Delta-aminolevulinic acid dehydratase RK54_RS13865 PF16177 Acetyl-coenzyme A synthetase N-terminus RK54_RS13865 PF00501 AMP-binding enzyme RK54_RS13865 PF13193 AMP-binding enzyme C-terminal domain RK54_RS13870 PF03972 MmgE/PrpD family RK54_RS13875 PF00285 Citrate synthase, C-terminal domain RK54_RS13885 PF00158 Sigma-54 interaction domain RK54_RS13885 PF06506 Propionate catabolism activator RK54_RS13885 PF02954 Bacterial regulatory protein, Fis family RK54_RS13890 PF07338 Protein of unknown function (DUF1471) RK54_RS13895 PF01810 LysE type translocator RK54_RS13900 PF00593 TonB dependent receptor RK54_RS13900 PF07715 TonB-dependent Receptor Plug Domain RK54_RS13915 PF02322 Cytochrome bd terminal oxidase subunit II RK54_RS13920 PF01654 Cytochrome bd terminal oxidase subunit I RK54_RS13930 PF08774 VRR-NUC domain RK54_RS13930 PF04851 Type III restriction enzyme, res subunit RK54_RS13935 PF18273 Type III R-M EcoP15I C-terminal domain RK54_RS13935 PF01555 DNA methylase RK54_RS13940 PF07690 Major Facilitator Superfamily RK54_RS13950 PF09278 MerR, DNA binding RK54_RS13950 PF00376 MerR family regulatory protein RK54_RS13955 PF00403 Heavy-metal-associated domain RK54_RS13960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RK54_RS13965 PF00873 AcrB/AcrD/AcrF family RK54_RS13970 PF02321 Outer membrane efflux protein RK54_RS13990 PF13505 Outer membrane protein beta-barrel domain RK54_RS14005 PF00563 EAL domain RK54_RS14005 PF12792 CSS motif domain associated with EAL RK54_RS14030 PF16970 Type-1 fimbrial protein, A RK54_RS14035 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS14035 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS14040 PF13953 PapC C-terminal domain RK54_RS14040 PF00577 Outer membrane usher protein RK54_RS14040 PF13954 PapC N-terminal domain RK54_RS14050 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS14050 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS14065 PF03466 LysR substrate binding domain RK54_RS14065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS14075 PF01557 Fumarylacetoacetate (FAA) hydrolase family RK54_RS14080 PF00694 Aconitase C-terminal domain RK54_RS14085 PF00330 Aconitase family (aconitate hydratase) RK54_RS14090 PF07690 Major Facilitator Superfamily RK54_RS14095 PF08986 Domain of unknown function (DUF1889) RK54_RS14100 PF18427 DD-reactivating factor swiveling domain RK54_RS14100 PF08841 Diol dehydratase reactivase ATPase-like domain RK54_RS14105 PF08841 Diol dehydratase reactivase ATPase-like domain RK54_RS14105 PF18427 DD-reactivating factor swiveling domain RK54_RS14115 PF13356 Arm DNA-binding domain RK54_RS14115 PF00589 Phage integrase family RK54_RS14125 PF04138 GtrA-like protein RK54_RS14130 PF00535 Glycosyl transferase family 2 RK54_RS14245 PF03245 Bacteriophage Rz lysis protein RK54_RS14250 PF00959 Phage lysozyme RK54_RS14265 PF03589 Antitermination protein RK54_RS14310 PF05772 NinB protein RK54_RS14315 PF03796 DnaB-like helicase C terminal domain RK54_RS14315 PF00772 DnaB-like helicase N terminal domain RK54_RS14340 PF01381 Helix-turn-helix RK54_RS14340 PF00717 Peptidase S24-like RK54_RS14440 PF00589 Phage integrase family RK54_RS14450 PF00171 Aldehyde dehydrogenase family RK54_RS14455 PF00696 Amino acid kinase family RK54_RS14455 PF01472 PUA domain RK54_RS14460 PF00267 Gram-negative porin RK54_RS14465 PF07417 Sigma factor-binding transcriptional regulator Crl RK54_RS14470 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) RK54_RS14475 PF00156 Phosphoribosyl transferase domain RK54_RS14480 PF01546 Peptidase family M20/M25/M40 RK54_RS14480 PF07687 Peptidase dimerisation domain RK54_RS14485 PF00472 RF-1 domain RK54_RS14495 PF11798 IMS family HHH motif RK54_RS14495 PF00817 impB/mucB/samB family RK54_RS14495 PF11799 impB/mucB/samB family C-terminal domain RK54_RS14500 PF03734 L,D-transpeptidase catalytic domain RK54_RS14505 PF13230 Glutamine amidotransferases class-II RK54_RS14510 PF13580 SIS domain RK54_RS14515 PF09317 Domain of unknown function (DUF1974) RK54_RS14515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RK54_RS14515 PF02770 Acyl-CoA dehydrogenase, middle domain RK54_RS14515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RK54_RS14520 PF00795 Carbon-nitrogen hydrolase RK54_RS14530 PF13505 Outer membrane protein beta-barrel domain RK54_RS14550 PF13404 AsnC-type helix-turn-helix domain RK54_RS14550 PF01037 Lrp/AsnC ligand binding domain RK54_RS14610 PF05593 RHS Repeat RK54_RS14610 PF03527 RHS protein RK54_RS14620 PF06715 Gp5 C-terminal repeat (3 copies) RK54_RS14620 PF04717 Type VI secretion system, phage-baseplate injector RK54_RS14655 PF06761 Intracellular multiplication and human macrophage-killing RK54_RS14655 PF06744 Type VI secretion protein IcmF C-terminal RK54_RS14655 PF14331 ImcF-related N-terminal domain RK54_RS14670 PF05736 OprF membrane domain RK54_RS14670 PF00691 OmpA family RK54_RS14675 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE RK54_RS14715 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath RK54_RS14720 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 RK54_RS14725 PF10431 C-terminal, D2-small domain, of ClpB protein RK54_RS14725 PF00004 ATPase family associated with various cellular activities (AAA) RK54_RS14725 PF07724 AAA domain (Cdc48 subfamily) RK54_RS14725 PF17871 AAA lid domain RK54_RS14740 PF04965 Gene 25-like lysozyme RK54_RS14745 PF05947 Type VI secretion system, TssF RK54_RS14765 PF00929 Exonuclease RK54_RS14770 PF00075 RNase H RK54_RS14775 PF08241 Methyltransferase domain RK54_RS14780 PF16123 Hydroxyacylglutathione hydrolase C-terminus RK54_RS14780 PF00753 Metallo-beta-lactamase superfamily RK54_RS14785 PF01464 Transglycosylase SLT domain RK54_RS14785 PF01476 LysM domain RK54_RS14790 PF08241 Methyltransferase domain RK54_RS14795 PF03372 Endonuclease/Exonuclease/phosphatase family RK54_RS14800 PF07690 Major Facilitator Superfamily RK54_RS14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS14805 PF03466 LysR substrate binding domain RK54_RS14810 PF00248 Aldo/keto reductase family RK54_RS14850 PF09383 NIL domain RK54_RS14850 PF00005 ABC transporter RK54_RS14855 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS14860 PF03180 NLPA lipoprotein RK54_RS14865 PF16358 RcsF lipoprotein RK54_RS14870 PF18389 TrmO C-terminal domain RK54_RS14870 PF01980 tRNA-methyltransferase O RK54_RS14875 PF03129 Anticodon binding domain RK54_RS14875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RK54_RS14875 PF04073 Aminoacyl-tRNA editing domain RK54_RS14880 PF17185 NlpE C-terminal OB domain RK54_RS14880 PF04170 NlpE N-terminal domain RK54_RS14885 PF00472 RF-1 domain RK54_RS14890 PF07152 YaeQ protein RK54_RS14895 PF06786 Uncharacterised protein family (UPF0253) RK54_RS14900 PF07073 Modulator of Rho-dependent transcription termination (ROF) RK54_RS14905 PF09179 TilS substrate binding domain RK54_RS14905 PF11734 TilS substrate C-terminal domain RK54_RS14905 PF01171 PP-loop family RK54_RS14910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK54_RS14915 PF01276 Orn/Lys/Arg decarboxylase, major domain RK54_RS14915 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RK54_RS14915 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RK54_RS14920 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RK54_RS14920 PF18416 N-acetylglucosamine binding protein domain 2 RK54_RS14925 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RK54_RS14930 PF01336 OB-fold nucleic acid binding domain RK54_RS14930 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RK54_RS14930 PF02811 PHP domain RK54_RS14930 PF14579 Helix-hairpin-helix motif RK54_RS14930 PF07733 Bacterial DNA polymerase III alpha NTPase domain RK54_RS14935 PF01351 Ribonuclease HII RK54_RS14940 PF02684 Lipid-A-disaccharide synthetase RK54_RS14945 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RK54_RS14945 PF00132 Bacterial transferase hexapeptide (six repeats) RK54_RS14950 PF07977 FabA-like domain RK54_RS14955 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RK54_RS14955 PF00132 Bacterial transferase hexapeptide (six repeats) RK54_RS14960 PF03938 Outer membrane protein (OmpH-like) RK54_RS14965 PF01103 Surface antigen RK54_RS14965 PF07244 Surface antigen variable number repeat RK54_RS14970 PF02163 Peptidase family M50 RK54_RS14970 PF17820 PDZ domain RK54_RS14980 PF01255 Putative undecaprenyl diphosphate synthase RK54_RS14990 PF13288 DXP reductoisomerase C-terminal domain RK54_RS14990 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RK54_RS14990 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RK54_RS14995 PF01765 Ribosome recycling factor RK54_RS15000 PF00696 Amino acid kinase family RK54_RS15005 PF00889 Elongation factor TS RK54_RS15015 PF00318 Ribosomal protein S2 RK54_RS15020 PF00557 Metallopeptidase family M24 RK54_RS15030 PF01842 ACT domain RK54_RS15030 PF08335 GlnD PII-uridylyltransferase RK54_RS15030 PF01909 Nucleotidyltransferase domain RK54_RS15030 PF01966 HD domain RK54_RS15035 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RK54_RS15035 PF14602 Hexapeptide repeat of succinyl-transferase RK54_RS15035 PF00132 Bacterial transferase hexapeptide (six repeats) RK54_RS15040 PF07690 Major Facilitator Superfamily RK54_RS15040 PF00083 Sugar (and other) transporter RK54_RS15045 PF11944 Protein of unknown function (DUF3461) RK54_RS15050 PF13556 PucR C-terminal helix-turn-helix domain RK54_RS15050 PF17853 GGDEF-like domain RK54_RS15050 PF05651 Putative sugar diacid recognition RK54_RS15055 PF00595 PDZ domain RK54_RS15060 PF13286 Phosphohydrolase-associated domain RK54_RS15060 PF01966 HD domain RK54_RS15065 PF01048 Phosphorylase superfamily RK54_RS15070 PF01497 Periplasmic binding protein RK54_RS15075 PF03458 UPF0126 domain RK54_RS15080 PF01521 Iron-sulphur cluster biosynthesis RK54_RS15085 PF00654 Voltage gated chloride channel RK54_RS15090 PF00202 Aminotransferase class-III RK54_RS15095 PF11245 Protein of unknown function (DUF2544) RK54_RS15100 PF00419 Fimbrial protein RK54_RS15105 PF00419 Fimbrial protein RK54_RS15110 PF00419 Fimbrial protein RK54_RS15115 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS15115 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS15120 PF13953 PapC C-terminal domain RK54_RS15120 PF00577 Outer membrane usher protein RK54_RS15120 PF13954 PapC N-terminal domain RK54_RS15135 PF01032 FecCD transport family RK54_RS15140 PF01497 Periplasmic binding protein RK54_RS15145 PF00005 ABC transporter RK54_RS15150 PF00593 TonB dependent receptor RK54_RS15150 PF07715 TonB-dependent Receptor Plug Domain RK54_RS15155 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal RK54_RS15155 PF14814 Bifunctional transglycosylase second domain RK54_RS15155 PF00912 Transglycosylase RK54_RS15155 PF00905 Penicillin binding protein transpeptidase domain RK54_RS15160 PF00271 Helicase conserved C-terminal domain RK54_RS15160 PF08482 ATP-dependent helicase C-terminal RK54_RS15160 PF00270 DEAD/DEAH box helicase RK54_RS15160 PF04408 Helicase associated domain (HA2) RK54_RS15165 PF02834 LigT like Phosphoesterase RK54_RS15170 PF17746 SfsA N-terminal OB domain RK54_RS15170 PF03749 Sugar fermentation stimulation protein RE domain RK54_RS15175 PF01258 Prokaryotic dksA/traR C4-type zinc finger RK54_RS15180 PF00749 tRNA synthetases class I (E and Q), catalytic domain RK54_RS15185 PF12627 Probable RNA and SrmB- binding site of polymerase A RK54_RS15185 PF12626 Polymerase A arginine-rich C-terminus RK54_RS15185 PF01743 Poly A polymerase head domain RK54_RS15190 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RK54_RS15195 PF02548 Ketopantoate hydroxymethyltransferase RK54_RS15200 PF02569 Pantoate-beta-alanine ligase RK54_RS15205 PF02261 Aspartate decarboxylase RK54_RS15215 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS15215 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS15220 PF00577 Outer membrane usher protein RK54_RS15220 PF13954 PapC N-terminal domain RK54_RS15220 PF13953 PapC C-terminal domain RK54_RS15225 PF00419 Fimbrial protein RK54_RS15245 PF01522 Polysaccharide deacetylase RK54_RS15250 PF03610 PTS system fructose IIA component RK54_RS15260 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS15260 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS15265 PF00577 Outer membrane usher protein RK54_RS15265 PF13954 PapC N-terminal domain RK54_RS15265 PF13953 PapC C-terminal domain RK54_RS15270 PF00419 Fimbrial protein RK54_RS15275 PF01061 ABC-2 type transporter RK54_RS15280 PF00005 ABC transporter RK54_RS15285 PF00484 Carbonic anhydrase RK54_RS15290 PF00156 Phosphoribosyl transferase domain RK54_RS15295 PF01011 PQQ enzyme repeat RK54_RS15300 PF00394 Multicopper oxidase RK54_RS15300 PF07731 Multicopper oxidase RK54_RS15300 PF07732 Multicopper oxidase RK54_RS15305 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) RK54_RS15310 PF17284 Spermidine synthase tetramerisation domain RK54_RS15315 PF02675 S-adenosylmethionine decarboxylase RK54_RS15320 PF08220 DeoR-like helix-turn-helix domain RK54_RS15320 PF00455 DeoR C terminal sensor domain RK54_RS15325 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RK54_RS15335 PF03812 2-keto-3-deoxygluconate permease RK54_RS15340 PF06062 Uncharacterised protein family (UPF0231) RK54_RS15355 PF00330 Aconitase family (aconitate hydratase) RK54_RS15355 PF06434 Aconitate hydratase 2 N-terminus RK54_RS15355 PF11791 Aconitate B N-terminal domain RK54_RS15385 PF11791 Aconitate B N-terminal domain RK54_RS15385 PF06434 Aconitate hydratase 2 N-terminus RK54_RS15385 PF00330 Aconitase family (aconitate hydratase) RK54_RS15395 PF11737 Protein of unknown function (DUF3300) RK54_RS15410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RK54_RS15410 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS15415 PF02817 e3 binding domain RK54_RS15415 PF00364 Biotin-requiring enzyme RK54_RS15415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RK54_RS15420 PF17831 Pyruvate dehydrogenase E1 component middle domain RK54_RS15420 PF00456 Transketolase, thiamine diphosphate binding domain RK54_RS15425 PF07729 FCD domain RK54_RS15425 PF00392 Bacterial regulatory proteins, gntR family RK54_RS15430 PF00324 Amino acid permease RK54_RS15440 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain RK54_RS15440 PF04616 Glycosyl hydrolases family 43 RK54_RS15445 PF17113 Regulatory signalling modulator protein AmpE RK54_RS15450 PF01510 N-acetylmuramoyl-L-alanine amidase RK54_RS15455 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RK54_RS15455 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RK54_RS15465 PF07963 Prokaryotic N-terminal methylation motif RK54_RS15470 PF00437 Type II/IV secretion system protein RK54_RS15470 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RK54_RS15475 PF00482 Type II secretion system (T2SS), protein F RK54_RS15480 PF00478 IMP dehydrogenase / GMP reductase domain RK54_RS15485 PF01121 Dephospho-CoA kinase RK54_RS15490 PF07072 Cell division protein RK54_RS15495 PF03884 DNA gyrase inhibitor YacG RK54_RS15510 PF00293 NUDIX domain RK54_RS15515 PF07516 SecA Wing and Scaffold domain RK54_RS15515 PF07517 SecA DEAD-like domain RK54_RS15515 PF02810 SEC-C motif RK54_RS15515 PF01043 SecA preprotein cross-linking domain RK54_RS15520 PF06558 Secretion monitor precursor protein (SecM) RK54_RS15525 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RK54_RS15530 PF00091 Tubulin/FtsZ family, GTPase domain RK54_RS15530 PF12327 FtsZ family, C-terminal domain RK54_RS15535 PF02491 SHS2 domain inserted in FTSA RK54_RS15540 PF08478 POTRA domain, FtsQ-type RK54_RS15540 PF03799 Cell division protein FtsQ RK54_RS15545 PF07478 D-ala D-ala ligase C-terminus RK54_RS15545 PF01820 D-ala D-ala ligase N-terminus RK54_RS15550 PF08245 Mur ligase middle domain RK54_RS15550 PF01225 Mur ligase family, catalytic domain RK54_RS15550 PF02875 Mur ligase family, glutamate ligase domain RK54_RS15555 PF04101 Glycosyltransferase family 28 C-terminal domain RK54_RS15555 PF03033 Glycosyltransferase family 28 N-terminal domain RK54_RS15560 PF01098 Cell cycle protein RK54_RS15565 PF02875 Mur ligase family, glutamate ligase domain RK54_RS15565 PF08245 Mur ligase middle domain RK54_RS15570 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RK54_RS15570 PF00953 Glycosyl transferase family 4 RK54_RS15575 PF08245 Mur ligase middle domain RK54_RS15575 PF02875 Mur ligase family, glutamate ligase domain RK54_RS15575 PF01225 Mur ligase family, catalytic domain RK54_RS15580 PF01225 Mur ligase family, catalytic domain RK54_RS15580 PF02875 Mur ligase family, glutamate ligase domain RK54_RS15580 PF08245 Mur ligase middle domain RK54_RS15585 PF00905 Penicillin binding protein transpeptidase domain RK54_RS15585 PF03717 Penicillin-binding Protein dimerisation domain RK54_RS15590 PF04999 Cell division protein FtsL RK54_RS15595 PF01795 MraW methylase family RK54_RS15600 PF02381 MraZ protein, putative antitoxin-like RK54_RS15605 PF00356 Bacterial regulatory proteins, lacI family RK54_RS15605 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RK54_RS15610 PF10369 Small subunit of acetolactate synthase RK54_RS15615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK54_RS15615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK54_RS15615 PF00205 Thiamine pyrophosphate enzyme, central domain RK54_RS15620 PF03466 LysR substrate binding domain RK54_RS15620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS15625 PF08054 Leucine operon leader peptide RK54_RS15630 PF00682 HMGL-like RK54_RS15630 PF08502 LeuA allosteric (dimerisation) domain RK54_RS15635 PF00180 Isocitrate/isopropylmalate dehydrogenase RK54_RS15640 PF00330 Aconitase family (aconitate hydratase) RK54_RS15645 PF00694 Aconitase C-terminal domain RK54_RS15655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK54_RS15655 PF12793 Sugar transport-related sRNA regulator N-term RK54_RS15665 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS15670 PF00005 ABC transporter RK54_RS15675 PF09335 SNARE associated Golgi protein RK54_RS15680 PF12833 Helix-turn-helix domain RK54_RS15680 PF02311 AraC-like ligand binding domain RK54_RS15685 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK54_RS15690 PF11762 L-arabinose isomerase C-terminal domain RK54_RS15690 PF02610 L-arabinose isomerase RK54_RS15695 PF00596 Class II Aldolase and Adducin N-terminal domain RK54_RS15715 PF03104 DNA polymerase family B, exonuclease domain RK54_RS15715 PF00136 DNA polymerase family B RK54_RS15725 PF12137 RNA polymerase recycling family C-terminal RK54_RS15725 PF00176 SNF2 family N-terminal domain RK54_RS15725 PF18339 RapA N-terminal Tudor like domain 1 RK54_RS15725 PF18337 RapA N-terminal Tudor like domain RK54_RS15725 PF00271 Helicase conserved C-terminal domain RK54_RS15730 PF00849 RNA pseudouridylate synthase RK54_RS15735 PF00226 DnaJ domain RK54_RS15735 PF05099 Tellurite resistance protein TerB RK54_RS15740 PF03968 OstA-like protein RK54_RS15740 PF04453 LPS transport system D RK54_RS15745 PF00639 PPIC-type PPIASE domain RK54_RS15745 PF09312 SurA N-terminal domain RK54_RS15750 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RK54_RS15755 PF00398 Ribosomal RNA adenine dimethylase RK54_RS15760 PF04379 ApaG domain RK54_RS15765 PF00149 Calcineurin-like phosphoesterase RK54_RS15770 PF00186 Dihydrofolate reductase RK54_RS15780 PF00999 Sodium/hydrogen exchanger family RK54_RS15780 PF02254 TrkA-N domain RK54_RS15785 PF02525 Flavodoxin-like fold RK54_RS15800 PF00884 Sulfatase RK54_RS15820 PF06004 Bacterial protein of unknown function (DUF903) RK54_RS15825 PF00083 Sugar (and other) transporter RK54_RS15835 PF01494 FAD binding domain RK54_RS15840 PF00766 Electron transfer flavoprotein FAD-binding domain RK54_RS15840 PF01012 Electron transfer flavoprotein domain RK54_RS15845 PF01012 Electron transfer flavoprotein domain RK54_RS15855 PF02028 BCCT, betaine/carnitine/choline family transporter RK54_RS15860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RK54_RS15860 PF02770 Acyl-CoA dehydrogenase, middle domain RK54_RS15860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RK54_RS15865 PF02515 CoA-transferase family III RK54_RS15870 PF00501 AMP-binding enzyme RK54_RS15870 PF13193 AMP-binding enzyme C-terminal domain RK54_RS15875 PF00378 Enoyl-CoA hydratase/isomerase RK54_RS15880 PF00132 Bacterial transferase hexapeptide (six repeats) RK54_RS15885 PF07180 CaiF/GrlA transcriptional regulator RK54_RS15890 PF02142 MGS-like domain RK54_RS15890 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RK54_RS15890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RK54_RS15895 PF00117 Glutamine amidotransferase class-I RK54_RS15895 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RK54_RS15905 PF01113 Dihydrodipicolinate reductase, N-terminus RK54_RS15905 PF05173 Dihydrodipicolinate reductase, C-terminus RK54_RS15910 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase RK54_RS15915 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase RK54_RS15920 PF04223 Citrate lyase, alpha subunit (CitF) RK54_RS15925 PF03328 HpcH/HpaI aldolase/citrate lyase family RK54_RS15930 PF06857 Malonate decarboxylase delta subunit (MdcD) RK54_RS15935 PF08218 Citrate lyase ligase C-terminal domain RK54_RS15935 PF00583 Acetyltransferase (GNAT) family RK54_RS15940 PF03390 2-hydroxycarboxylate transporter family RK54_RS15945 PF04277 Oxaloacetate decarboxylase, gamma chain RK54_RS15950 PF00682 HMGL-like RK54_RS15950 PF00364 Biotin-requiring enzyme RK54_RS15950 PF02436 Conserved carboxylase domain RK54_RS15955 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit RK54_RS15960 PF17203 Single cache domain 3 RK54_RS15960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS15965 PF12431 Transcriptional regulator RK54_RS15965 PF00072 Response regulator receiver domain RK54_RS15970 PF01156 Inosine-uridine preferring nucleoside hydrolase RK54_RS15980 PF02401 LytB protein RK54_RS15985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RK54_RS15990 PF01252 Signal peptidase (SPase) II RK54_RS15995 PF00133 tRNA synthetases class I (I, L, M and V) RK54_RS15995 PF08264 Anticodon-binding domain of tRNA RK54_RS15995 PF06827 Zinc finger found in FPG and IleRS RK54_RS16000 PF01687 Riboflavin kinase RK54_RS16000 PF06574 FAD synthetase RK54_RS16005 PF10837 Protein of unknown function (DUF2575) RK54_RS16010 PF01649 Ribosomal protein S20 RK54_RS16020 PF01055 Glycosyl hydrolases family 31 RK54_RS16025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS16025 PF03466 LysR substrate binding domain RK54_RS16030 PF06965 Na+/H+ antiporter 1 RK54_RS16050 PF04055 Radical SAM superfamily RK54_RS16050 PF13186 Iron-sulfur cluster-binding domain RK54_RS16055 PF16385 Domain of unknown function RK54_RS16055 PF00884 Sulfatase RK54_RS16090 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS16090 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS16095 PF16970 Type-1 fimbrial protein, A RK54_RS16100 PF00419 Fimbrial protein RK54_RS16105 PF00419 Fimbrial protein RK54_RS16110 PF00577 Outer membrane usher protein RK54_RS16110 PF13954 PapC N-terminal domain RK54_RS16110 PF13953 PapC C-terminal domain RK54_RS16115 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS16115 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS16120 PF00419 Fimbrial protein RK54_RS16135 PF00704 Glycosyl hydrolases family 18 RK54_RS16155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS16155 PF03466 LysR substrate binding domain RK54_RS16160 PF00684 DnaJ central domain RK54_RS16160 PF01556 DnaJ C terminal domain RK54_RS16160 PF00226 DnaJ domain RK54_RS16165 PF00012 Hsp70 protein RK54_RS16170 PF10807 Protein of unknown function (DUF2541) RK54_RS16175 PF13099 Domain of unknown function (DUF3944) RK54_RS16175 PF03981 Ubiquinol-cytochrome C chaperone RK54_RS16180 PF01184 GPR1/FUN34/yaaH family RK54_RS16185 PF00994 Probable molybdopterin binding domain RK54_RS16190 PF00923 Transaldolase/Fructose-6-phosphate aldolase RK54_RS16195 PF01235 Sodium:alanine symporter family RK54_RS16200 PF03883 Peroxide stress protein YaaA RK54_RS16205 PF00291 Pyridoxal-phosphate dependent enzyme RK54_RS16205 PF14821 Threonine synthase N terminus RK54_RS16210 PF00288 GHMP kinases N terminal domain RK54_RS16210 PF08544 GHMP kinases C terminal RK54_RS16215 PF01842 ACT domain RK54_RS16215 PF13840 ACT domain RK54_RS16215 PF00742 Homoserine dehydrogenase RK54_RS16215 PF03447 Homoserine dehydrogenase, NAD binding domain RK54_RS16215 PF00696 Amino acid kinase family RK54_RS16220 PF08254 Threonine leader peptide RK54_RS16225 PF00588 SpoU rRNA Methylase family RK54_RS16235 PF00072 Response regulator receiver domain RK54_RS16235 PF00486 Transcriptional regulatory protein, C terminal RK54_RS16245 PF15977 Winged helix-turn-helix DNA binding RK54_RS16255 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS16255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS16260 PF13954 PapC N-terminal domain RK54_RS16260 PF00577 Outer membrane usher protein RK54_RS16260 PF13953 PapC C-terminal domain RK54_RS16275 PF06123 Inner membrane protein CreD RK54_RS16280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS16280 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS16280 PF00672 HAMP domain RK54_RS16285 PF00486 Transcriptional regulatory protein, C terminal RK54_RS16285 PF00072 Response regulator receiver domain RK54_RS16290 PF05981 CreA protein RK54_RS16295 PF12833 Helix-turn-helix domain RK54_RS16295 PF06445 GyrI-like small molecule binding domain RK54_RS16300 PF00300 Histidine phosphatase superfamily (branch 1) RK54_RS16305 PF01931 Protein of unknown function DUF84 RK54_RS16315 PF01371 Trp repressor protein RK54_RS16320 PF14718 Soluble lytic murein transglycosylase L domain RK54_RS16320 PF01464 Transglycosylase SLT domain RK54_RS16330 PF12848 ABC transporter RK54_RS16330 PF00005 ABC transporter RK54_RS16335 PF01381 Helix-turn-helix RK54_RS16335 PF13521 AAA domain RK54_RS16340 PF18073 Rubredoxin metal binding domain RK54_RS16345 PF18429 Domain of unknown function (DUF5609) RK54_RS16355 PF10144 Bacterial virulence factor haemolysin RK54_RS16360 PF03099 Biotin/lipoate A/B protein ligase family RK54_RS16360 PF10437 Bacterial lipoate protein ligase C-terminus RK54_RS16370 PF06551 Protein of unknown function (DUF1120) RK54_RS16375 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS16380 PF13954 PapC N-terminal domain RK54_RS16380 PF13953 PapC C-terminal domain RK54_RS16380 PF00577 Outer membrane usher protein RK54_RS16390 PF01048 Phosphorylase superfamily RK54_RS16395 PF01676 Metalloenzyme superfamily RK54_RS16400 PF00591 Glycosyl transferase family, a/b domain RK54_RS16400 PF02885 Glycosyl transferase family, helical bundle domain RK54_RS16400 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RK54_RS16405 PF01791 DeoC/LacD family aldolase RK54_RS16410 PF11230 Protein of unknown function (DUF3029) RK54_RS16415 PF04055 Radical SAM superfamily RK54_RS16420 PF01026 TatD related DNase RK54_RS16425 PF01734 Patatin-like phospholipase RK54_RS16430 PF07043 Protein of unknown function (DUF1328) RK54_RS16435 PF04972 BON domain RK54_RS16440 PF16658 Class II release factor RF3, C-terminal domain RK54_RS16440 PF00009 Elongation factor Tu GTP binding domain RK54_RS16440 PF03144 Elongation factor Tu domain 2 RK54_RS16445 PF13419 Haloacid dehalogenase-like hydrolase RK54_RS16450 PF00583 Acetyltransferase (GNAT) family RK54_RS16455 PF03603 DNA polymerase III psi subunit RK54_RS16460 PF05175 Methyltransferase small domain RK54_RS16460 PF08468 Methyltransferase small domain N-terminal RK54_RS16480 PF07256 Protein of unknown function (DUF1435) RK54_RS16485 PF05230 MASE2 domain RK54_RS16485 PF00990 Diguanylate cyclase, GGDEF domain RK54_RS16490 PF06276 Ferric iron reductase FhuF-like transporter RK54_RS16490 PF11575 FhuF 2Fe-2S C-terminal domain RK54_RS16495 PF04073 Aminoacyl-tRNA editing domain RK54_RS16500 PF00196 Bacterial regulatory proteins, luxR family RK54_RS16505 PF00196 Bacterial regulatory proteins, luxR family RK54_RS16510 PF06738 Putative threonine/serine exporter RK54_RS16515 PF12821 Threonine/Serine exporter, ThrE RK54_RS16520 PF17948 DnaT DNA-binding domain RK54_RS16525 PF01695 IstB-like ATP binding protein RK54_RS16530 PF10696 Protein of unknown function (DUF2501) RK54_RS16535 PF00884 Sulfatase RK54_RS16540 PF01380 SIS domain RK54_RS16545 PF01380 SIS domain RK54_RS16550 PF03613 PTS system mannose/fructose/sorbose family IID component RK54_RS16555 PF03609 PTS system sorbose-specific iic component RK54_RS16560 PF03830 PTS system sorbose subfamily IIB component RK54_RS16570 PF00158 Sigma-54 interaction domain RK54_RS16570 PF00874 PRD domain RK54_RS16575 PF00672 HAMP domain RK54_RS16575 PF02203 Tar ligand binding domain homologue RK54_RS16575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RK54_RS16580 PF13722 5TM C-terminal transporter carbon starvation CstA RK54_RS16580 PF02554 Carbon starvation protein CstA RK54_RS16585 PF04328 Selenoprotein, putative RK54_RS16590 PF07683 Cobalamin synthesis protein cobW C-terminal domain RK54_RS16590 PF02492 CobW/HypB/UreG, nucleotide-binding domain RK54_RS16605 PF04471 Restriction endonuclease RK54_RS16605 PF14338 Mrr N-terminal domain RK54_RS16610 PF04851 Type III restriction enzyme, res subunit RK54_RS16610 PF08463 EcoEI R protein C-terminal RK54_RS16610 PF00271 Helicase conserved C-terminal domain RK54_RS16610 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RK54_RS16615 PF02384 N-6 DNA Methylase RK54_RS16620 PF01420 Type I restriction modification DNA specificity domain RK54_RS16625 PF08845 Toxin SymE, type I toxin-antitoxin system RK54_RS16645 PF00171 Aldehyde dehydrogenase family RK54_RS16650 PF04754 Putative transposase, YhgA-like RK54_RS16650 PF04754 Putative transposase, YhgA-like RK54_RS16655 PF07690 Major Facilitator Superfamily RK54_RS16660 PF04286 Protein of unknown function (DUF445) RK54_RS16665 PF06779 Uncharacterised MFS-type transporter YbfB RK54_RS16670 PF07670 Nucleoside recognition RK54_RS16675 PF07670 Nucleoside recognition RK54_RS16680 PF01979 Amidohydrolase family RK54_RS16685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS16685 PF03466 LysR substrate binding domain RK54_RS16690 PF01177 Asp/Glu/Hydantoin racemase RK54_RS16705 PF00579 tRNA synthetases class I (W and Y) RK54_RS16710 PF07729 FCD domain RK54_RS16710 PF00392 Bacterial regulatory proteins, gntR family RK54_RS16720 PF01738 Dienelactone hydrolase family RK54_RS16725 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RK54_RS16725 PF03625 Domain of unknown function DUF302 RK54_RS16755 PF09857 Putative toxin of bacterial toxin-antitoxin pair RK54_RS16760 PF13847 Methyltransferase domain RK54_RS16770 PF01709 Transcriptional regulator RK54_RS16790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK54_RS16795 PF00580 UvrD/REP helicase N-terminal domain RK54_RS16795 PF13361 UvrD-like helicase C-terminal domain RK54_RS16800 PF00271 Helicase conserved C-terminal domain RK54_RS16800 PF00270 DEAD/DEAH box helicase RK54_RS16800 PF09369 Domain of unknown function (DUF1998) RK54_RS16810 PF18339 RapA N-terminal Tudor like domain 1 RK54_RS16810 PF18337 RapA N-terminal Tudor like domain RK54_RS16810 PF00271 Helicase conserved C-terminal domain RK54_RS16810 PF12137 RNA polymerase recycling family C-terminal RK54_RS16810 PF00176 SNF2 family N-terminal domain RK54_RS16825 PF00589 Phage integrase family RK54_RS16825 PF13356 Arm DNA-binding domain RK54_RS16835 PF00107 Zinc-binding dehydrogenase RK54_RS16835 PF08240 Alcohol dehydrogenase GroES-like domain RK54_RS16840 PF01202 Shikimate kinase RK54_RS16845 PF00107 Zinc-binding dehydrogenase RK54_RS16845 PF08240 Alcohol dehydrogenase GroES-like domain RK54_RS16850 PF00106 short chain dehydrogenase RK54_RS16855 PF02447 GntP family permease RK54_RS16860 PF00356 Bacterial regulatory proteins, lacI family RK54_RS16865 PF03739 Lipopolysaccharide export system permease LptF/LptG RK54_RS16870 PF03739 Lipopolysaccharide export system permease LptF/LptG RK54_RS16885 PF00883 Cytosol aminopeptidase family, catalytic domain RK54_RS16885 PF02789 Cytosol aminopeptidase family, N-terminal domain RK54_RS16890 PF04364 DNA polymerase III chi subunit, HolC RK54_RS16895 PF10458 Valyl tRNA synthetase tRNA binding arm RK54_RS16895 PF08264 Anticodon-binding domain of tRNA RK54_RS16895 PF00133 tRNA synthetases class I (I, L, M and V) RK54_RS16900 PF05987 Bacterial protein of unknown function (DUF898) RK54_RS16905 PF00583 Acetyltransferase (GNAT) family RK54_RS16910 PF12276 Protein of unknown function (DUF3617) RK54_RS16915 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) RK54_RS16920 PF01797 Transposase IS200 like RK54_RS16930 PF06877 Regulator of ribonuclease activity B RK54_RS16935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RK54_RS16935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RK54_RS16940 PF04074 YhcH/YjgK/YiaL RK54_RS16955 PF00696 Amino acid kinase family RK54_RS16960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RK54_RS16960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RK54_RS16965 PF03606 C4-dicarboxylate anaerobic carrier RK54_RS16970 PF02863 Arginine repressor, C-terminal domain RK54_RS16970 PF01316 Arginine repressor, DNA binding domain RK54_RS16980 PF08052 PyrBI operon leader peptide RK54_RS16985 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RK54_RS16985 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RK54_RS16990 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain RK54_RS16990 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain RK54_RS16995 PF01042 Endoribonuclease L-PSP RK54_RS17005 PF00690 Cation transporter/ATPase, N-terminus RK54_RS17005 PF00689 Cation transporting ATPase, C-terminus RK54_RS17010 PF00356 Bacterial regulatory proteins, lacI family RK54_RS17015 PF02378 Phosphotransferase system, EIIC RK54_RS17015 PF00367 phosphotransferase system, EIIB RK54_RS17020 PF00128 Alpha amylase, catalytic domain RK54_RS17020 PF11941 Domain of unknown function (DUF3459) RK54_RS17025 PF13597 Anaerobic ribonucleoside-triphosphate reductase RK54_RS17025 PF03477 ATP cone domain RK54_RS17035 PF05016 ParE toxin of type II toxin-antitoxin system, parDE RK54_RS17040 PF04221 RelB antitoxin RK54_RS17045 PF00874 PRD domain RK54_RS17045 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK54_RS17045 PF08279 HTH domain RK54_RS17045 PF05043 Mga helix-turn-helix domain RK54_RS17050 PF07071 KDGP aldolase RK54_RS17055 PF03841 L-seryl-tRNA selenium transferase RK54_RS17060 PF01979 Amidohydrolase family RK54_RS17090 PF07361 Cytochrome b562 RK54_RS17095 PF01523 Putative modulator of DNA gyrase RK54_RS17100 PF04751 Protein of unknown function (DUF615) RK54_RS17105 PF01225 Mur ligase family, catalytic domain RK54_RS17105 PF02875 Mur ligase family, glutamate ligase domain RK54_RS17105 PF08245 Mur ligase middle domain RK54_RS17110 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RK54_RS17115 PF00719 Inorganic pyrophosphatase RK54_RS17120 PF01979 Amidohydrolase family RK54_RS17125 PF07690 Major Facilitator Superfamily RK54_RS17130 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like RK54_RS17135 PF04357 TamB, inner membrane protein subunit of TAM complex RK54_RS17140 PF07244 Surface antigen variable number repeat RK54_RS17140 PF17243 POTRA domain TamA domain 1 RK54_RS17140 PF01103 Surface antigen RK54_RS17145 PF01625 Peptide methionine sulfoxide reductase RK54_RS17150 PF00571 CBS domain RK54_RS17150 PF03471 Transporter associated domain RK54_RS17150 PF01595 Cyclin M transmembrane N-terminal domain RK54_RS17155 PF06526 Protein of unknown function (DUF1107) RK54_RS17165 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) RK54_RS17170 PF00459 Inositol monophosphatase family RK54_RS17180 PF02872 5'-nucleotidase, C-terminal domain RK54_RS17180 PF00149 Calcineurin-like phosphoesterase RK54_RS17185 PF01638 HxlR-like helix-turn-helix RK54_RS17190 PF05368 NmrA-like family RK54_RS17195 PF00892 EamA-like transporter family RK54_RS17200 PF04405 Domain of Unknown function (DUF542) RK54_RS17200 PF01814 Hemerythrin HHE cation binding domain RK54_RS17205 PF00324 Amino acid permease RK54_RS17210 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RK54_RS17210 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RK54_RS17220 PF04225 Opacity-associated protein A LysM-like domain RK54_RS17220 PF08525 Opacity-associated protein A N-terminal motif RK54_RS17230 PF01281 Ribosomal protein L9, N-terminal domain RK54_RS17230 PF03948 Ribosomal protein L9, C-terminal domain RK54_RS17235 PF01084 Ribosomal protein S18 RK54_RS17240 PF00436 Single-strand binding protein family RK54_RS17245 PF01250 Ribosomal protein S6 RK54_RS17260 PF07338 Protein of unknown function (DUF1471) RK54_RS17265 PF00596 Class II Aldolase and Adducin N-terminal domain RK54_RS17270 PF01261 Xylose isomerase-like TIM barrel RK54_RS17275 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RK54_RS17280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK54_RS17285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK54_RS17290 PF03611 PTS system sugar-specific permease component RK54_RS17300 PF08220 DeoR-like helix-turn-helix domain RK54_RS17300 PF00455 DeoR C terminal sensor domain RK54_RS17305 PF00326 Prolyl oligopeptidase family RK54_RS17310 PF07338 Protein of unknown function (DUF1471) RK54_RS17315 PF07338 Protein of unknown function (DUF1471) RK54_RS17320 PF02770 Acyl-CoA dehydrogenase, middle domain RK54_RS17320 PF18158 Adaptive response protein AidB N-terminal domain RK54_RS17320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RK54_RS17325 PF03738 Glutathionylspermidine synthase preATP-grasp RK54_RS17330 PF06693 Protein of unknown function (DUF1190) RK54_RS17335 PF03994 Domain of Unknown Function (DUF350) RK54_RS17340 PF10679 Protein of unknown function (DUF2491) RK54_RS17350 PF04012 PspA/IM30 family RK54_RS17355 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) RK54_RS17365 PF00588 SpoU rRNA Methylase family RK54_RS17365 PF08032 RNA 2'-O ribose methyltransferase substrate binding RK54_RS17370 PF17876 Cold shock domain RK54_RS17370 PF08206 Ribonuclease B OB domain RK54_RS17370 PF00773 RNB domain RK54_RS17370 PF08461 Ribonuclease R winged-helix domain RK54_RS17370 PF00575 S1 RNA binding domain RK54_RS17375 PF02082 Transcriptional regulator RK54_RS17380 PF00709 Adenylosuccinate synthetase RK54_RS17385 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) RK54_RS17390 PF01145 SPFH domain / Band 7 family RK54_RS17395 PF01145 SPFH domain / Band 7 family RK54_RS17395 PF12221 Bacterial membrane protein N terminal RK54_RS17400 PF16360 GTP-binding GTPase Middle Region RK54_RS17400 PF13167 GTP-binding GTPase N-terminal RK54_RS17400 PF01926 50S ribosome-binding GTPase RK54_RS17405 PF17209 Hfq protein RK54_RS17415 PF01119 DNA mismatch repair protein, C-terminal domain RK54_RS17415 PF08676 MutL C terminal dimerisation domain RK54_RS17420 PF01520 N-acetylmuramoyl-L-alanine amidase RK54_RS17425 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RK54_RS17430 PF03853 YjeF-related protein N-terminus RK54_RS17430 PF01256 Carbohydrate kinase RK54_RS17435 PF08331 Domain of unknown function (DUF1730) RK54_RS17455 PF00497 Bacterial extracellular solute-binding proteins, family 3 RK54_RS17460 PF00929 Exonuclease RK54_RS17465 PF03193 RsgA GTPase RK54_RS17470 PF02666 Phosphatidylserine decarboxylase RK54_RS17475 PF12794 Mechanosensitive ion channel inner membrane domain 1 RK54_RS17475 PF12795 Mechanosensitive ion channel porin domain RK54_RS17475 PF00924 Mechanosensitive ion channel RK54_RS17485 PF13520 Amino acid permease RK54_RS17490 PF00152 tRNA synthetases class II (D, K and N) RK54_RS17495 PF02910 Fumarate reductase flavoprotein C-term RK54_RS17495 PF00890 FAD binding domain RK54_RS17500 PF13085 2Fe-2S iron-sulfur cluster binding domain RK54_RS17500 PF13183 4Fe-4S dicluster domain RK54_RS17505 PF02300 Fumarate reductase subunit C RK54_RS17510 PF02313 Fumarate reductase subunit D RK54_RS17515 PF08212 Lipocalin-like domain RK54_RS17520 PF00893 Small Multidrug Resistance protein RK54_RS17525 PF00196 Bacterial regulatory proteins, luxR family RK54_RS17530 PF08085 Entericidin EcnA/B family RK54_RS17540 PF08085 Entericidin EcnA/B family RK54_RS17545 PF08207 Elongation factor P (EF-P) KOW-like domain RK54_RS17545 PF01132 Elongation factor P (EF-P) OB domain RK54_RS17545 PF09285 Elongation factor P, C-terminal RK54_RS17550 PF04055 Radical SAM superfamily RK54_RS17555 PF15922 YjeJ-like RK54_RS17560 PF13698 Domain of unknown function (DUF4156) RK54_RS17565 PF00118 TCP-1/cpn60 chaperonin family RK54_RS17570 PF00166 Chaperonin 10 Kd subunit RK54_RS17575 PF13520 Amino acid permease RK54_RS17580 PF04186 FxsA cytoplasmic membrane protein RK54_RS17585 PF00206 Lyase RK54_RS17585 PF10415 Fumarase C C-terminus RK54_RS17590 PF03605 Anaerobic c4-dicarboxylate membrane transporter RK54_RS17595 PF03091 CutA1 divalent ion tolerance protein RK54_RS17600 PF11412 Disulphide bond corrector protein DsbC RK54_RS17600 PF02683 Cytochrome C biogenesis protein transmembrane region RK54_RS17620 PF01569 PAP2 superfamily RK54_RS17650 PF12833 Helix-turn-helix domain RK54_RS17655 PF00196 Bacterial regulatory proteins, luxR family RK54_RS17655 PF00072 Response regulator receiver domain RK54_RS17660 PF00005 ABC transporter RK54_RS17665 PF06977 SdiA-regulated RK54_RS17675 PF02613 Nitrate reductase delta subunit RK54_RS17680 PF04976 DMSO reductase anchor subunit (DmsC) RK54_RS17685 PF13247 4Fe-4S dicluster domain RK54_RS17685 PF12800 4Fe-4S binding domain RK54_RS17690 PF01568 Molydopterin dinucleotide binding domain RK54_RS17690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS17690 PF00384 Molybdopterin oxidoreductase RK54_RS17695 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RK54_RS17695 PF17203 Single cache domain 3 RK54_RS17695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS17695 PF00989 PAS fold RK54_RS17700 PF00072 Response regulator receiver domain RK54_RS17710 PF03605 Anaerobic c4-dicarboxylate membrane transporter RK54_RS17715 PF05681 Fumarate hydratase (Fumerase) RK54_RS17715 PF05683 Fumarase C-terminus RK54_RS17725 PF02056 Family 4 glycosyl hydrolase RK54_RS17725 PF11975 Family 4 glycosyl hydrolase C-terminal domain RK54_RS17730 PF12833 Helix-turn-helix domain RK54_RS17735 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RK54_RS17735 PF01276 Orn/Lys/Arg decarboxylase, major domain RK54_RS17735 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RK54_RS17740 PF12833 Helix-turn-helix domain RK54_RS17745 PF13520 Amino acid permease RK54_RS17750 PF08019 Phosphoethanolamine transferase EptA/EptB RK54_RS17750 PF00884 Sulfatase RK54_RS17755 PF00072 Response regulator receiver domain RK54_RS17755 PF00486 Transcriptional regulatory protein, C terminal RK54_RS17760 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS17760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS17770 PF08946 Osmosensory transporter coiled coil RK54_RS17770 PF00083 Sugar (and other) transporter RK54_RS17775 PF03831 PhnA domain RK54_RS17775 PF08274 PhnA Zinc-Ribbon RK54_RS17780 PF06983 3-demethylubiquinone-9 3-methyltransferase RK54_RS17785 PF00583 Acetyltransferase (GNAT) family RK54_RS17800 PF08238 Sel1 repeat RK54_RS17805 PF00375 Sodium:dicarboxylate symporter family RK54_RS17815 PF03918 Cytochrome C biogenesis protein RK54_RS17820 PF01578 Cytochrome C assembly protein RK54_RS17820 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RK54_RS17825 PF03916 Polysulphide reductase, NrfD RK54_RS17830 PF00037 4Fe-4S binding domain RK54_RS17830 PF13247 4Fe-4S dicluster domain RK54_RS17835 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) RK54_RS17835 PF13435 Cytochrome c554 and c-prime RK54_RS17840 PF02335 Cytochrome c552 RK54_RS17850 PF00501 AMP-binding enzyme RK54_RS17850 PF16177 Acetyl-coenzyme A synthetase N-terminus RK54_RS17850 PF13193 AMP-binding enzyme C-terminal domain RK54_RS17860 PF04341 Protein of unknown function, DUF485 RK54_RS17865 PF00474 Sodium:solute symporter family RK54_RS17870 PF04172 LrgB-like family RK54_RS17875 PF03788 LrgA family RK54_RS17880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS17880 PF03466 LysR substrate binding domain RK54_RS17885 PF00999 Sodium/hydrogen exchanger family RK54_RS17895 PF00860 Permease family RK54_RS17910 PF09278 MerR, DNA binding RK54_RS17910 PF00376 MerR family regulatory protein RK54_RS17915 PF12833 Helix-turn-helix domain RK54_RS17920 PF00563 EAL domain RK54_RS17920 PF12792 CSS motif domain associated with EAL RK54_RS17925 PF15940 Family of unknown function RK54_RS17930 PF00664 ABC transporter transmembrane region RK54_RS17930 PF00005 ABC transporter RK54_RS17965 PF00436 Single-strand binding protein family RK54_RS17975 PF17760 UvrA interaction domain RK54_RS17975 PF17755 UvrA DNA-binding domain RK54_RS17975 PF00005 ABC transporter RK54_RS17990 PF04237 YjbR RK54_RS17995 PF01894 Uncharacterised protein family UPF0047 RK54_RS18000 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) RK54_RS18010 PF00155 Aminotransferase class I and II RK54_RS18015 PF01168 Alanine racemase, N-terminal domain RK54_RS18015 PF00842 Alanine racemase, C-terminal domain RK54_RS18020 PF03796 DnaB-like helicase C terminal domain RK54_RS18020 PF00772 DnaB-like helicase N terminal domain RK54_RS18025 PF00107 Zinc-binding dehydrogenase RK54_RS18025 PF08240 Alcohol dehydrogenase GroES-like domain RK54_RS18030 PF09583 Phage shock protein G (Phageshock_PspG) RK54_RS18035 PF01207 Dihydrouridine synthase (Dus) RK54_RS18045 PF01475 Ferric uptake regulator family RK54_RS18050 PF05532 CsbD-like RK54_RS18060 PF01554 MatE RK54_RS18065 PF01726 LexA DNA binding domain RK54_RS18065 PF00717 Peptidase S24-like RK54_RS18070 PF01219 Prokaryotic diacylglycerol kinase RK54_RS18075 PF01553 Acyltransferase RK54_RS18080 PF01040 UbiA prenyltransferase family RK54_RS18085 PF04345 Chorismate lyase RK54_RS18090 PF07148 Maltose operon periplasmic protein precursor (MalM) RK54_RS18095 PF02264 LamB porin RK54_RS18100 PF00005 ABC transporter RK54_RS18100 PF17912 MalK OB fold domain RK54_RS18105 PF01547 Bacterial extracellular solute-binding protein RK54_RS18110 PF14785 Maltose transport system permease protein MalF P2 domain RK54_RS18110 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS18115 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS18120 PF06146 Phosphate-starvation-inducible E RK54_RS18125 PF06082 Exopolysaccharide biosynthesis protein YbjH RK54_RS18130 PF06251 Capsule biosynthesis GfcC RK54_RS18135 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF RK54_RS18145 PF00342 Phosphoglucose isomerase RK54_RS18150 PF00696 Amino acid kinase family RK54_RS18150 PF01842 ACT domain RK54_RS18155 PF08765 Mor transcription activator family RK54_RS18230 PF04138 GtrA-like protein RK54_RS18235 PF00535 Glycosyl transferase family 2 RK54_RS18260 PF03335 Phage tail fibre repeat RK54_RS18260 PF08400 Prophage tail fibre N-terminal RK54_RS18260 PF07484 Phage Tail Collar Domain RK54_RS18285 PF01758 Sodium Bile acid symporter family RK54_RS18290 PF11656 YjbD family (DUF3811) RK54_RS18295 PF01479 S4 domain RK54_RS18295 PF00849 RNA pseudouridylate synthase RK54_RS18300 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) RK54_RS18310 PF03575 Peptidase family S51 RK54_RS18315 PF02690 Na+/Pi-cotransporter RK54_RS18320 PF02310 B12 binding domain RK54_RS18320 PF02607 B12 binding domain RK54_RS18320 PF02965 Vitamin B12 dependent methionine synthase, activation domain RK54_RS18320 PF00809 Pterin binding enzyme RK54_RS18320 PF02574 Homocysteine S-methyltransferase RK54_RS18325 PF01614 Bacterial transcriptional regulator RK54_RS18325 PF09339 IclR helix-turn-helix domain RK54_RS18335 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) RK54_RS18340 PF00463 Isocitrate lyase family RK54_RS18345 PF01274 Malate synthase RK54_RS18350 PF04204 Homoserine O-succinyltransferase RK54_RS18355 PF13673 Acetyltransferase (GNAT) domain RK54_RS18385 PF02142 MGS-like domain RK54_RS18385 PF01808 AICARFT/IMPCHase bienzyme RK54_RS18390 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RK54_RS18390 PF02843 Phosphoribosylglycinamide synthetase, C domain RK54_RS18390 PF02844 Phosphoribosylglycinamide synthetase, N domain RK54_RS18395 PF00072 Response regulator receiver domain RK54_RS18395 PF02954 Bacterial regulatory protein, Fis family RK54_RS18395 PF00158 Sigma-54 interaction domain RK54_RS18400 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS18400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS18405 PF13801 Heavy-metal resistance RK54_RS18410 PF07356 Protein of unknown function (DUF1481) RK54_RS18415 PF00216 Bacterial DNA-binding protein RK54_RS18420 PF04222 Protein of unknown function (DUF416) RK54_RS18425 PF04493 Endonuclease V RK54_RS18430 PF01208 Uroporphyrinogen decarboxylase (URO-D) RK54_RS18435 PF09297 NADH pyrophosphatase zinc ribbon domain RK54_RS18435 PF00293 NUDIX domain RK54_RS18440 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ RK54_RS18445 PF01964 Radical SAM ThiC family RK54_RS18445 PF13667 ThiC-associated domain RK54_RS18450 PF02581 Thiamine monophosphate synthase RK54_RS18455 PF00899 ThiF family RK54_RS18460 PF02597 ThiS family RK54_RS18465 PF05690 Thiazole biosynthesis protein ThiG RK54_RS18470 PF06968 Biotin and Thiamin Synthesis associated domain RK54_RS18470 PF04055 Radical SAM superfamily RK54_RS18495 PF04983 RNA polymerase Rpb1, domain 3 RK54_RS18495 PF05000 RNA polymerase Rpb1, domain 4 RK54_RS18495 PF04998 RNA polymerase Rpb1, domain 5 RK54_RS18495 PF00623 RNA polymerase Rpb1, domain 2 RK54_RS18495 PF04997 RNA polymerase Rpb1, domain 1 RK54_RS18500 PF04561 RNA polymerase Rpb2, domain 2 RK54_RS18500 PF04560 RNA polymerase Rpb2, domain 7 RK54_RS18500 PF00562 RNA polymerase Rpb2, domain 6 RK54_RS18500 PF04563 RNA polymerase beta subunit RK54_RS18500 PF04565 RNA polymerase Rpb2, domain 3 RK54_RS18500 PF10385 RNA polymerase beta subunit external 1 domain RK54_RS18505 PF00542 Ribosomal protein L7/L12 C-terminal domain RK54_RS18505 PF16320 Ribosomal protein L7/L12 dimerisation domain RK54_RS18510 PF00466 Ribosomal protein L10 RK54_RS18520 PF00687 Ribosomal protein L1p/L10e family RK54_RS18525 PF00298 Ribosomal protein L11, RNA binding domain RK54_RS18525 PF03946 Ribosomal protein L11, N-terminal domain RK54_RS18530 PF02357 Transcription termination factor nusG RK54_RS18530 PF00467 KOW motif RK54_RS18535 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RK54_RS18540 PF03144 Elongation factor Tu domain 2 RK54_RS18540 PF03143 Elongation factor Tu C-terminal domain RK54_RS18540 PF00009 Elongation factor Tu GTP binding domain RK54_RS18575 PF00485 Phosphoribulokinase / Uridine kinase family RK54_RS18580 PF08279 HTH domain RK54_RS18580 PF03099 Biotin/lipoate A/B protein ligase family RK54_RS18580 PF02237 Biotin protein ligase C terminal domain RK54_RS18585 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RK54_RS18585 PF01565 FAD binding domain RK54_RS18615 PF01177 Asp/Glu/Hydantoin racemase RK54_RS18620 PF07715 TonB-dependent Receptor Plug Domain RK54_RS18620 PF00593 TonB dependent receptor RK54_RS18625 PF05958 tRNA (Uracil-5-)-methyltransferase RK54_RS18630 PF07226 Protein of unknown function (DUF1422) RK54_RS18635 PF00440 Bacterial regulatory proteins, tetR family RK54_RS18640 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS18640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RK54_RS18645 PF03466 LysR substrate binding domain RK54_RS18645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS18655 PF00206 Lyase RK54_RS18655 PF14698 Argininosuccinate lyase C-terminal RK54_RS18660 PF00696 Amino acid kinase family RK54_RS18665 PF01118 Semialdehyde dehydrogenase, NAD binding domain RK54_RS18665 PF02774 Semialdehyde dehydrogenase, dimerisation domain RK54_RS18670 PF07687 Peptidase dimerisation domain RK54_RS18670 PF01546 Peptidase family M20/M25/M40 RK54_RS18680 PF00311 Phosphoenolpyruvate carboxylase RK54_RS18685 PF00884 Sulfatase RK54_RS18690 PF12833 Helix-turn-helix domain RK54_RS18695 PF00923 Transaldolase/Fructose-6-phosphate aldolase RK54_RS18700 PF00465 Iron-containing alcohol dehydrogenase RK54_RS18705 PF06940 Domain of unknown function (DUF1287) RK54_RS18710 PF00141 Peroxidase RK54_RS18715 PF02219 Methylenetetrahydrofolate reductase RK54_RS18720 PF00149 Calcineurin-like phosphoesterase RK54_RS18720 PF17936 Bacterial Ig domain RK54_RS18720 PF02872 5'-nucleotidase, C-terminal domain RK54_RS18735 PF00924 Mechanosensitive ion channel RK54_RS18735 PF05552 Conserved TM helix RK54_RS18740 PF00696 Amino acid kinase family RK54_RS18740 PF00742 Homoserine dehydrogenase RK54_RS18740 PF03447 Homoserine dehydrogenase, NAD binding domain RK54_RS18745 PF01053 Cys/Met metabolism PLP-dependent enzyme RK54_RS18750 PF01340 Met Apo-repressor, MetJ RK54_RS18755 PF05935 Arylsulfotransferase (ASST) RK54_RS18755 PF17425 Arylsulfotransferase Ig-like domain RK54_RS18765 PF01197 Ribosomal protein L31 RK54_RS18770 PF00270 DEAD/DEAH box helicase RK54_RS18770 PF00271 Helicase conserved C-terminal domain RK54_RS18770 PF17764 3′ DNA-binding domain (3′BD) RK54_RS18770 PF18074 Primosomal protein N C-terminal domain RK54_RS18770 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RK54_RS18775 PF00356 Bacterial regulatory proteins, lacI family RK54_RS18780 PF05036 Sporulation related domain RK54_RS18785 PF00227 Proteasome subunit RK54_RS18790 PF00004 ATPase family associated with various cellular activities (AAA) RK54_RS18790 PF07724 AAA domain (Cdc48 subfamily) RK54_RS18790 PF10431 C-terminal, D2-small domain, of ClpB protein RK54_RS18795 PF01040 UbiA prenyltransferase family RK54_RS18800 PF03737 Aldolase/RraA RK54_RS18805 PF06005 Cell division protein ZapB RK54_RS18810 PF00230 Major intrinsic protein RK54_RS18815 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RK54_RS18815 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK54_RS18820 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RK54_RS18825 PF00970 Oxidoreductase FAD-binding domain RK54_RS18825 PF00175 Oxidoreductase NAD-binding domain RK54_RS18830 PF05656 Protein of unknown function (DUF805) RK54_RS18835 PF07305 Protein of unknown function (DUF1454) RK54_RS18840 PF00121 Triosephosphate isomerase RK54_RS18845 PF00834 Ribulose-phosphate 3 epimerase family RK54_RS18850 PF03992 Antibiotic biosynthesis monooxygenase RK54_RS18855 PF01791 DeoC/LacD family aldolase RK54_RS18860 PF13407 Periplasmic binding protein domain RK54_RS18865 PF02653 Branched-chain amino acid transport system / permease component RK54_RS18870 PF02653 Branched-chain amino acid transport system / permease component RK54_RS18875 PF00005 ABC transporter RK54_RS18880 PF04198 Putative sugar-binding domain RK54_RS18885 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RK54_RS18885 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK54_RS18895 PF02611 CDP-diacylglycerol pyrophosphatase RK54_RS18905 PF00392 Bacterial regulatory proteins, gntR family RK54_RS18905 PF00155 Aminotransferase class I and II RK54_RS18915 PF00294 pfkB family carbohydrate kinase RK54_RS18925 PF02611 CDP-diacylglycerol pyrophosphatase RK54_RS18935 PF00365 Phosphofructokinase RK54_RS18940 PF01545 Cation efflux family RK54_RS18940 PF16916 Dimerisation domain of Zinc Transporter RK54_RS18945 PF07813 LTXXQ motif family protein RK54_RS18950 PF00486 Transcriptional regulatory protein, C terminal RK54_RS18950 PF00072 Response regulator receiver domain RK54_RS18955 PF16527 Two-component sensor protein CpxA, periplasmic domain RK54_RS18955 PF00672 HAMP domain RK54_RS18955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS18955 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS18970 PF03473 MOSC domain RK54_RS18970 PF03475 3-alpha domain RK54_RS18975 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RK54_RS18975 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RK54_RS18980 PF03480 Bacterial extracellular solute-binding protein, family 7 RK54_RS18985 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RK54_RS18990 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RK54_RS18995 PF06178 Oligogalacturonate-specific porin protein (KdgM) RK54_RS19000 PF06379 L-rhamnose-proton symport protein (RhaT) RK54_RS19005 PF02311 AraC-like ligand binding domain RK54_RS19005 PF12833 Helix-turn-helix domain RK54_RS19010 PF02311 AraC-like ligand binding domain RK54_RS19010 PF12833 Helix-turn-helix domain RK54_RS19015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK54_RS19015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RK54_RS19020 PF06134 L-rhamnose isomerase (RhaA) RK54_RS19025 PF00596 Class II Aldolase and Adducin N-terminal domain RK54_RS19030 PF00465 Iron-containing alcohol dehydrogenase RK54_RS19035 PF05336 L-rhamnose mutarotase RK54_RS19045 PF03591 AzlC protein RK54_RS19055 PF12889 Protein of unknown function (DUF3829) RK54_RS19060 PF12889 Protein of unknown function (DUF3829) RK54_RS19065 PF02634 FdhD/NarQ family RK54_RS19070 PF00384 Molybdopterin oxidoreductase RK54_RS19070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS19070 PF01568 Molydopterin dinucleotide binding domain RK54_RS19075 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK54_RS19075 PF01568 Molydopterin dinucleotide binding domain RK54_RS19075 PF00384 Molybdopterin oxidoreductase RK54_RS19080 PF09163 Formate dehydrogenase N, transmembrane RK54_RS19080 PF13247 4Fe-4S dicluster domain RK54_RS19085 PF01292 Prokaryotic cytochrome b561 RK54_RS19090 PF04216 Protein involved in formate dehydrogenase formation RK54_RS19100 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system RK54_RS19105 PF07859 alpha/beta hydrolase fold RK54_RS19110 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system RK54_RS19115 PF01381 Helix-turn-helix RK54_RS19120 PF09500 Putative thioesterase (yiiD_Cterm) RK54_RS19120 PF00583 Acetyltransferase (GNAT) family RK54_RS19125 PF02580 D-Tyr-tRNA(Tyr) deacylase RK54_RS19130 PF03631 Virulence factor BrkB RK54_RS19135 PF13419 Haloacid dehalogenase-like hydrolase RK54_RS19140 PF00455 DeoR C terminal sensor domain RK54_RS19140 PF08220 DeoR-like helix-turn-helix domain RK54_RS19145 PF00294 pfkB family carbohydrate kinase RK54_RS19150 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RK54_RS19150 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RK54_RS19155 PF01791 DeoC/LacD family aldolase RK54_RS19165 PF01263 Aldose 1-epimerase RK54_RS19175 PF01055 Glycosyl hydrolases family 31 RK54_RS19190 PF06178 Oligogalacturonate-specific porin protein (KdgM) RK54_RS19200 PF00679 Elongation factor G C-terminus RK54_RS19200 PF03144 Elongation factor Tu domain 2 RK54_RS19200 PF00009 Elongation factor Tu GTP binding domain RK54_RS19210 PF03951 Glutamine synthetase, beta-Grasp domain RK54_RS19210 PF00120 Glutamine synthetase, catalytic domain RK54_RS19220 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS19220 PF00989 PAS fold RK54_RS19220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS19225 PF02954 Bacterial regulatory protein, Fis family RK54_RS19225 PF00158 Sigma-54 interaction domain RK54_RS19225 PF00072 Response regulator receiver domain RK54_RS19235 PF04055 Radical SAM superfamily RK54_RS19235 PF06969 HemN C-terminal domain RK54_RS19240 PF04220 Der GTPase activator (YihI) RK54_RS19250 PF01926 50S ribosome-binding GTPase RK54_RS19255 PF01612 3'-5' exonuclease RK54_RS19255 PF00476 DNA polymerase family A RK54_RS19255 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RK54_RS19255 PF01367 5'-3' exonuclease, C-terminal SAM fold RK54_RS19265 PF01553 Acyltransferase RK54_RS19270 PF01323 DSBA-like thioredoxin domain RK54_RS19275 PF01636 Phosphotransferase enzyme family RK54_RS19280 PF06288 Protein of unknown function (DUF1040) RK54_RS19285 PF12804 MobA-like NTP transferase domain RK54_RS19290 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RK54_RS19325 PF12724 Flavodoxin domain RK54_RS19330 PF02386 Cation transport protein RK54_RS19335 PF09186 Domain of unknown function (DUF1949) RK54_RS19335 PF01205 Uncharacterized protein family UPF0029 RK54_RS19340 PF00557 Metallopeptidase family M24 RK54_RS19345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RK54_RS19345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RK54_RS19345 PF00378 Enoyl-CoA hydratase/isomerase RK54_RS19350 PF00108 Thiolase, N-terminal domain RK54_RS19350 PF02803 Thiolase, C-terminal domain RK54_RS19355 PF17425 Arylsulfotransferase Ig-like domain RK54_RS19355 PF05935 Arylsulfotransferase (ASST) RK54_RS19360 PF00970 Oxidoreductase FAD-binding domain RK54_RS19360 PF00175 Oxidoreductase NAD-binding domain RK54_RS19365 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RK54_RS19370 PF02357 Transcription termination factor nusG RK54_RS19375 PF01026 TatD related DNase RK54_RS19380 PF00902 Sec-independent protein translocase protein (TatC) RK54_RS19390 PF02416 mttA/Hcf106 family RK54_RS19395 PF03109 ABC1 family RK54_RS19400 PF02036 SCP-2 sterol transfer family RK54_RS19405 PF01209 ubiE/COQ5 methyltransferase family RK54_RS19410 PF02646 RmuC family RK54_RS19415 PF01048 Phosphorylase superfamily RK54_RS19420 PF01738 Dienelactone hydrolase family RK54_RS19425 PF04055 Radical SAM superfamily RK54_RS19425 PF13186 Iron-sulfur cluster-binding domain RK54_RS19430 PF08267 Cobalamin-independent synthase, N-terminal domain RK54_RS19430 PF01717 Cobalamin-independent synthase, Catalytic domain RK54_RS19435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS19435 PF03466 LysR substrate binding domain RK54_RS19440 PF00892 EamA-like transporter family RK54_RS19450 PF12146 Serine aminopeptidase, S33 RK54_RS19455 PF01810 LysE type translocator RK54_RS19460 PF01810 LysE type translocator RK54_RS19465 PF00271 Helicase conserved C-terminal domain RK54_RS19465 PF16124 RecQ zinc-binding RK54_RS19465 PF00570 HRDC domain RK54_RS19465 PF00270 DEAD/DEAH box helicase RK54_RS19465 PF09382 RQC domain RK54_RS19470 PF02253 Phospholipase A1 RK54_RS19475 PF03061 Thioesterase superfamily RK54_RS19480 PF00892 EamA-like transporter family RK54_RS19495 PF01544 CorA-like Mg2+ transporter protein RK54_RS19505 PF00580 UvrD/REP helicase N-terminal domain RK54_RS19505 PF13361 UvrD-like helicase C-terminal domain RK54_RS19510 PF13419 Haloacid dehalogenase-like hydrolase RK54_RS19515 PF00589 Phage integrase family RK54_RS19515 PF02899 Phage integrase, N-terminal SAM-like domain RK54_RS19520 PF04340 Protein of unknown function, DUF484 RK54_RS19525 PF01678 Diaminopimelate epimerase RK54_RS19530 PF13627 Prokaryotic lipoprotein-attachment site RK54_RS19550 PF01491 Frataxin-like domain RK54_RS19555 PF12633 Adenylate cyclase NT domain RK54_RS19555 PF01295 Adenylate cyclase, class-I RK54_RS19560 PF03900 Porphobilinogen deaminase, C-terminal domain RK54_RS19560 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RK54_RS19565 PF02602 Uroporphyrinogen-III synthase HemD RK54_RS19570 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase RK54_RS19575 PF07719 Tetratricopeptide repeat RK54_RS19575 PF07219 HemY protein N-terminus RK54_RS19600 PF00324 Amino acid permease RK54_RS19605 PF03808 Glycosyl transferase WecB/TagA/CpsF family RK54_RS19610 PF06899 WzyE protein, O-antigen assembly polymerase RK54_RS19615 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 RK54_RS19620 PF01943 Polysaccharide biosynthesis protein RK54_RS19625 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RK54_RS19635 PF00483 Nucleotidyl transferase RK54_RS19635 PF00483 Nucleotidyl transferase RK54_RS19640 PF16363 GDP-mannose 4,6 dehydratase RK54_RS19645 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RK54_RS19645 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RK54_RS19645 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RK54_RS19650 PF02350 UDP-N-acetylglucosamine 2-epimerase RK54_RS19655 PF02706 Chain length determinant protein RK54_RS19660 PF00953 Glycosyl transferase family 4 RK54_RS19665 PF07498 Rho termination factor, N-terminal domain RK54_RS19665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RK54_RS19665 PF07497 Rho termination factor, RNA-binding domain RK54_RS19675 PF00085 Thioredoxin RK54_RS19680 PF00271 Helicase conserved C-terminal domain RK54_RS19680 PF00270 DEAD/DEAH box helicase RK54_RS19690 PF02541 Ppx/GppA phosphatase family RK54_RS19695 PF00580 UvrD/REP helicase N-terminal domain RK54_RS19695 PF13361 UvrD-like helicase C-terminal domain RK54_RS19700 PF04973 Nicotinamide mononucleotide transporter RK54_RS19715 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RK54_RS19715 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RK54_RS19720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS19720 PF03466 LysR substrate binding domain RK54_RS19735 PF00585 C-terminal regulatory domain of Threonine dehydratase RK54_RS19735 PF00291 Pyridoxal-phosphate dependent enzyme RK54_RS19740 PF00920 Dehydratase family RK54_RS19745 PF01063 Amino-transferase class IV RK54_RS19755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK54_RS19755 PF00205 Thiamine pyrophosphate enzyme, central domain RK54_RS19755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK54_RS19760 PF08046 IlvGEDA operon leader peptide RK54_RS19765 PF01078 Magnesium chelatase, subunit ChlI RK54_RS19765 PF13335 Magnesium chelatase, subunit ChlI C-terminal RK54_RS19770 PF04219 Protein of unknown function, DUF RK54_RS19775 PF03466 LysR substrate binding domain RK54_RS19775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS19810 PF07729 FCD domain RK54_RS19810 PF00392 Bacterial regulatory proteins, gntR family RK54_RS19815 PF07690 Major Facilitator Superfamily RK54_RS19820 PF00356 Bacterial regulatory proteins, lacI family RK54_RS19825 PF00294 pfkB family carbohydrate kinase RK54_RS19830 PF13407 Periplasmic binding protein domain RK54_RS19835 PF02653 Branched-chain amino acid transport system / permease component RK54_RS19840 PF00005 ABC transporter RK54_RS19845 PF05025 RbsD / FucU transport protein family RK54_RS19850 PF02705 K+ potassium transporter RK54_RS19855 PF12592 Protein of unknown function (DUF3763) RK54_RS19855 PF17868 AAA lid domain RK54_RS19855 PF07728 AAA domain (dynein-related subfamily) RK54_RS19860 PF05762 VWA domain containing CoxE-like protein RK54_RS19865 PF03590 Aspartate-ammonia ligase RK54_RS19870 PF01037 Lrp/AsnC ligand binding domain RK54_RS19875 PF00258 Flavodoxin RK54_RS19885 PF01134 Glucose inhibited division protein A RK54_RS19885 PF13932 GidA associated domain RK54_RS19890 PF02527 rRNA small subunit methyltransferase G RK54_RS19895 PF03899 ATP synthase I chain RK54_RS19900 PF00119 ATP synthase A chain RK54_RS19905 PF00137 ATP synthase subunit C RK54_RS19910 PF00430 ATP synthase B/B' CF(0) RK54_RS19915 PF00213 ATP synthase delta (OSCP) subunit RK54_RS19920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RK54_RS19920 PF00306 ATP synthase alpha/beta chain, C terminal domain RK54_RS19920 PF02874 ATP synthase alpha/beta family, beta-barrel domain RK54_RS19925 PF00231 ATP synthase RK54_RS19930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RK54_RS19930 PF02874 ATP synthase alpha/beta family, beta-barrel domain RK54_RS19935 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RK54_RS19935 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RK54_RS19950 PF12804 MobA-like NTP transferase domain RK54_RS19950 PF00132 Bacterial transferase hexapeptide (six repeats) RK54_RS19955 PF01380 SIS domain RK54_RS19960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK54_RS19960 PF12793 Sugar transport-related sRNA regulator N-term RK54_RS19965 PF08501 Shikimate dehydrogenase substrate binding domain RK54_RS19970 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK54_RS19970 PF02378 Phosphotransferase system, EIIC RK54_RS19975 PF12849 PBP superfamily domain RK54_RS19980 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS19985 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS19990 PF00005 ABC transporter RK54_RS19995 PF01895 PhoU domain RK54_RS20000 PF13419 Haloacid dehalogenase-like hydrolase RK54_RS20005 PF00860 Permease family RK54_RS20010 PF03358 NADPH-dependent FMN reductase RK54_RS20020 PF03466 LysR substrate binding domain RK54_RS20020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS20025 PF07690 Major Facilitator Superfamily RK54_RS20030 PF01926 50S ribosome-binding GTPase RK54_RS20030 PF12631 MnmE helical domain RK54_RS20030 PF10396 GTP-binding protein TrmE N-terminus RK54_RS20035 PF02096 60Kd inner membrane protein RK54_RS20035 PF14849 YidC periplasmic domain RK54_RS20040 PF01809 Putative membrane protein insertion efficiency factor RK54_RS20045 PF00825 Ribonuclease P RK54_RS20050 PF00468 Ribosomal protein L34 RK54_RS20055 PF00308 Bacterial dnaA protein RK54_RS20055 PF08299 Bacterial dnaA protein helix-turn-helix RK54_RS20055 PF11638 DnaA N-terminal domain RK54_RS20060 PF02768 DNA polymerase III beta subunit, C-terminal domain RK54_RS20060 PF02767 DNA polymerase III beta subunit, central domain RK54_RS20060 PF00712 DNA polymerase III beta subunit, N-terminal domain RK54_RS20065 PF02463 RecF/RecN/SMC N terminal domain RK54_RS20070 PF00204 DNA gyrase B RK54_RS20070 PF01751 Toprim domain RK54_RS20070 PF18053 DNA gyrase B subunit insert domain RK54_RS20070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS20070 PF00986 DNA gyrase B subunit, carboxyl terminus RK54_RS20075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS20075 PF03466 LysR substrate binding domain RK54_RS20080 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RK54_RS20080 PF13378 Enolase C-terminal domain-like RK54_RS20085 PF07690 Major Facilitator Superfamily RK54_RS20095 PF07729 FCD domain RK54_RS20095 PF00392 Bacterial regulatory proteins, gntR family RK54_RS20100 PF05035 2-keto-3-deoxy-galactonokinase RK54_RS20105 PF01081 KDPG and KHG aldolase RK54_RS20110 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RK54_RS20110 PF13378 Enolase C-terminal domain-like RK54_RS20115 PF07690 Major Facilitator Superfamily RK54_RS20120 PF00672 HAMP domain RK54_RS20120 PF01627 Hpt domain RK54_RS20120 PF00072 Response regulator receiver domain RK54_RS20120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS20120 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS20125 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RK54_RS20130 PF00072 Response regulator receiver domain RK54_RS20130 PF00486 Transcriptional regulatory protein, C terminal RK54_RS20135 PF03264 NapC/NirT cytochrome c family, N-terminal region RK54_RS20140 PF18364 Molybdopterin oxidoreductase N-terminal domain RK54_RS20140 PF00384 Molybdopterin oxidoreductase RK54_RS20140 PF01568 Molydopterin dinucleotide binding domain RK54_RS20145 PF02613 Nitrate reductase delta subunit RK54_RS20150 PF14376 Haem-binding domain RK54_RS20150 PF00034 Cytochrome c RK54_RS20150 PF03150 Di-haem cytochrome c peroxidase RK54_RS20155 PF00005 ABC transporter RK54_RS20160 PF03379 CcmB protein RK54_RS20165 PF01578 Cytochrome C assembly protein RK54_RS20170 PF04995 Heme exporter protein D (CcmD) RK54_RS20175 PF03100 CcmE RK54_RS20180 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RK54_RS20180 PF01578 Cytochrome C assembly protein RK54_RS20185 PF08534 Redoxin RK54_RS20190 PF03918 Cytochrome C biogenesis protein RK54_RS20195 PF12566 Protein of unknown function (DUF3748) RK54_RS20195 PF07676 WD40-like Beta Propeller Repeat RK54_RS20200 PF07119 Protein of unknown function (DUF1375) RK54_RS20205 PF00011 Hsp20/alpha crystallin family RK54_RS20210 PF00011 Hsp20/alpha crystallin family RK54_RS20215 PF06826 Predicted Permease Membrane Region RK54_RS20215 PF02080 TrkA-C domain RK54_RS20220 PF02656 Domain of unknown function (DUF202) RK54_RS20225 PF02656 Domain of unknown function (DUF202) RK54_RS20235 PF00291 Pyridoxal-phosphate dependent enzyme RK54_RS20240 PF02447 GntP family permease RK54_RS20245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS20245 PF03466 LysR substrate binding domain RK54_RS20255 PF07690 Major Facilitator Superfamily RK54_RS20265 PF13939 Toxin TisB, type I toxin-antitoxin system RK54_RS20280 PF08049 IlvB leader peptide RK54_RS20285 PF00205 Thiamine pyrophosphate enzyme, central domain RK54_RS20285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK54_RS20285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK54_RS20290 PF01842 ACT domain RK54_RS20295 PF08220 DeoR-like helix-turn-helix domain RK54_RS20295 PF00455 DeoR C terminal sensor domain RK54_RS20300 PF00294 pfkB family carbohydrate kinase RK54_RS20305 PF07690 Major Facilitator Superfamily RK54_RS20315 PF00196 Bacterial regulatory proteins, luxR family RK54_RS20315 PF00072 Response regulator receiver domain RK54_RS20320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS20320 PF05231 MASE1 RK54_RS20320 PF07730 Histidine kinase RK54_RS20325 PF07690 Major Facilitator Superfamily RK54_RS20330 PF07690 Major Facilitator Superfamily RK54_RS20335 PF06711 Protein of unknown function (DUF1198) RK54_RS20340 PF07702 UTRA domain RK54_RS20340 PF00392 Bacterial regulatory proteins, gntR family RK54_RS20345 PF00874 PRD domain RK54_RS20345 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK54_RS20345 PF05043 Mga helix-turn-helix domain RK54_RS20345 PF08279 HTH domain RK54_RS20350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK54_RS20355 PF03611 PTS system sugar-specific permease component RK54_RS20365 PF01116 Fructose-bisphosphate aldolase class-II RK54_RS20385 PF07690 Major Facilitator Superfamily RK54_RS20390 PF00232 Glycosyl hydrolase family 1 RK54_RS20400 PF00874 PRD domain RK54_RS20400 PF00158 Sigma-54 interaction domain RK54_RS20410 PF03610 PTS system fructose IIA component RK54_RS20410 PF03830 PTS system sorbose subfamily IIB component RK54_RS20415 PF03609 PTS system sorbose-specific iic component RK54_RS20420 PF03613 PTS system mannose/fructose/sorbose family IID component RK54_RS20425 PF03841 L-seryl-tRNA selenium transferase RK54_RS20430 PF07071 KDGP aldolase RK54_RS20435 PF04754 Putative transposase, YhgA-like RK54_RS20440 PF00892 EamA-like transporter family RK54_RS20445 PF02308 MgtC family RK54_RS20450 PF00690 Cation transporter/ATPase, N-terminus RK54_RS20450 PF00689 Cation transporting ATPase, C-terminus RK54_RS20470 PF00857 Isochorismatase family RK54_RS20480 PF00486 Transcriptional regulatory protein, C terminal RK54_RS20490 PF03797 Autotransporter beta-domain RK54_RS20495 PF00196 Bacterial regulatory proteins, luxR family RK54_RS20515 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system RK54_RS20535 PF13802 Galactose mutarotase-like RK54_RS20535 PF01055 Glycosyl hydrolases family 31 RK54_RS20540 PF05170 AsmA family RK54_RS20545 PF00860 Permease family RK54_RS20550 PF03616 Sodium/glutamate symporter RK54_RS20560 PF00270 DEAD/DEAH box helicase RK54_RS20560 PF00271 Helicase conserved C-terminal domain RK54_RS20560 PF17191 RecG wedge domain RK54_RS20565 PF12105 SpoU, rRNA methylase, C-terminal RK54_RS20565 PF00588 SpoU rRNA Methylase family RK54_RS20570 PF04607 Region found in RelA / SpoT proteins RK54_RS20570 PF13291 ACT domain RK54_RS20570 PF02824 TGS domain RK54_RS20575 PF01192 RNA polymerase Rpb6 RK54_RS20580 PF00625 Guanylate kinase RK54_RS20585 PF01653 NAD-dependent DNA ligase adenylation domain RK54_RS20585 PF03120 NAD-dependent DNA ligase OB-fold domain RK54_RS20590 PF03458 UPF0126 domain RK54_RS20605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS20605 PF03466 LysR substrate binding domain RK54_RS20610 PF08340 Domain of unknown function (DUF1732) RK54_RS20610 PF03755 YicC-like family, N-terminal region RK54_RS20620 PF03725 3' exoribonuclease family, domain 2 RK54_RS20620 PF01138 3' exoribonuclease family, domain 1 RK54_RS20625 PF00156 Phosphoribosyl transferase domain RK54_RS20630 PF00440 Bacterial regulatory proteins, tetR family RK54_RS20635 PF00692 dUTPase RK54_RS20640 PF04127 DNA / pantothenate metabolism flavoprotein RK54_RS20640 PF02441 Flavoprotein RK54_RS20645 PF04002 RadC-like JAB domain RK54_RS20650 PF00830 Ribosomal L28 family RK54_RS20655 PF00471 Ribosomal protein L33 RK54_RS20660 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RK54_RS20660 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RK54_RS20660 PF06827 Zinc finger found in FPG and IleRS RK54_RS20665 PF01467 Cytidylyltransferase-like RK54_RS20670 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RK54_RS20675 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RK54_RS20680 PF00534 Glycosyl transferases group 1 RK54_RS20680 PF13439 Glycosyltransferase Family 4 RK54_RS20700 PF13439 Glycosyltransferase Family 4 RK54_RS20700 PF00534 Glycosyl transferases group 1 RK54_RS20705 PF08437 Glycosyl transferase family 8 C-terminal RK54_RS20705 PF01501 Glycosyl transferase family 8 RK54_RS20710 PF01501 Glycosyl transferase family 8 RK54_RS20710 PF08437 Glycosyl transferase family 8 C-terminal RK54_RS20715 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) RK54_RS20725 PF00534 Glycosyl transferases group 1 RK54_RS20730 PF04932 O-Antigen ligase RK54_RS20735 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RK54_RS20740 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RK54_RS20745 PF01370 NAD dependent epimerase/dehydratase family RK54_RS20750 PF00155 Aminotransferase class I and II RK54_RS20755 PF00107 Zinc-binding dehydrogenase RK54_RS20755 PF08240 Alcohol dehydrogenase GroES-like domain RK54_RS20760 PF00535 Glycosyl transferase family 2 RK54_RS20765 PF04748 Divergent polysaccharide deacetylase RK54_RS20770 PF01551 Peptidase family M23 RK54_RS20775 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RK54_RS20775 PF01676 Metalloenzyme superfamily RK54_RS20780 PF00581 Rhodanese-like domain RK54_RS20785 PF00462 Glutaredoxin RK54_RS20790 PF02556 Preprotein translocase subunit SecB RK54_RS20795 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RK54_RS20795 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RK54_RS20800 PF00132 Bacterial transferase hexapeptide (six repeats) RK54_RS20800 PF06426 Serine acetyltransferase, N-terminal RK54_RS20805 PF07690 Major Facilitator Superfamily RK54_RS20810 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RK54_RS20810 PF13378 Enolase C-terminal domain-like RK54_RS20820 PF00356 Bacterial regulatory proteins, lacI family RK54_RS20825 PF00588 SpoU rRNA Methylase family RK54_RS20830 PF01070 FMN-dependent dehydrogenase RK54_RS20835 PF00392 Bacterial regulatory proteins, gntR family RK54_RS20835 PF07729 FCD domain RK54_RS20840 PF02652 L-lactate permease RK54_RS20845 PF03895 YadA-like membrane anchor domain RK54_RS20845 PF13018 Extended Signal Peptide of Type V secretion system RK54_RS20845 PF05658 Head domain of trimeric autotransporter adhesin RK54_RS20845 PF05662 Coiled stalk of trimeric autotransporter adhesin RK54_RS20850 PF11622 Protein of unknown function (DUF3251) RK54_RS20860 PF10928 Protein of unknown function (DUF2810) RK54_RS20870 PF05068 Mannitol repressor RK54_RS20875 PF01232 Mannitol dehydrogenase Rossmann domain RK54_RS20875 PF08125 Mannitol dehydrogenase C-terminal domain RK54_RS20880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK54_RS20880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK54_RS20880 PF02378 Phosphotransferase system, EIIC RK54_RS20885 PF00043 Glutathione S-transferase, C-terminal domain RK54_RS20885 PF13417 Glutathione S-transferase, N-terminal domain RK54_RS20890 PF12390 Selenocysteine synthase N terminal RK54_RS20890 PF03841 L-seryl-tRNA selenium transferase RK54_RS20895 PF03144 Elongation factor Tu domain 2 RK54_RS20895 PF09107 Elongation factor SelB, winged helix RK54_RS20895 PF00009 Elongation factor Tu GTP binding domain RK54_RS20895 PF09106 Elongation factor SelB, winged helix RK54_RS20900 PF00480 ROK family RK54_RS20905 PF00171 Aldehyde dehydrogenase family RK54_RS20910 PF07944 Beta-L-arabinofuranosidase, GH127 RK54_RS20920 PF00596 Class II Aldolase and Adducin N-terminal domain RK54_RS20925 PF01261 Xylose isomerase-like TIM barrel RK54_RS20930 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RK54_RS20935 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RK54_RS20935 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK54_RS20940 PF03480 Bacterial extracellular solute-binding protein, family 7 RK54_RS20945 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RK54_RS20950 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RK54_RS20955 PF16154 Domain of unknown function (DUF4862) RK54_RS20960 PF04074 YhcH/YjgK/YiaL RK54_RS20965 PF02615 Malate/L-lactate dehydrogenase RK54_RS20970 PF09339 IclR helix-turn-helix domain RK54_RS20970 PF01614 Bacterial transcriptional regulator RK54_RS20975 PF13247 4Fe-4S dicluster domain RK54_RS20980 PF00155 Aminotransferase class I and II RK54_RS20985 PF00128 Alpha amylase, catalytic domain RK54_RS20995 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RK54_RS21000 PF12833 Helix-turn-helix domain RK54_RS21015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK54_RS21015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RK54_RS21020 PF05360 yiaA/B two helix domain RK54_RS21025 PF01757 Acyltransferase family RK54_RS21035 PF13983 YsaB-like lipoprotein RK54_RS21040 PF02091 Glycyl-tRNA synthetase alpha subunit RK54_RS21045 PF02092 Glycyl-tRNA synthetase beta subunit RK54_RS21045 PF05746 DALR anticodon binding domain RK54_RS21050 PF13333 Integrase core domain RK54_RS21050 PF13276 HTH-like domain RK54_RS21050 PF00665 Integrase core domain RK54_RS21075 PF00313 'Cold-shock' DNA-binding domain RK54_RS21080 PF01381 Helix-turn-helix RK54_RS21085 PF11254 Protein of unknown function (DUF3053) RK54_RS21090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK54_RS21090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK54_RS21095 PF13488 Glycine zipper RK54_RS21095 PF00691 OmpA family RK54_RS21100 PF18364 Molybdopterin oxidoreductase N-terminal domain RK54_RS21100 PF01568 Molydopterin dinucleotide binding domain RK54_RS21100 PF00384 Molybdopterin oxidoreductase RK54_RS21105 PF00583 Acetyltransferase (GNAT) family RK54_RS21110 PF03352 Methyladenine glycosylase RK54_RS21115 PF03797 Autotransporter beta-domain RK54_RS21120 PF00419 Fimbrial protein RK54_RS21125 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RK54_RS21125 PF02753 Pili assembly chaperone PapD, C-terminal domain RK54_RS21130 PF13953 PapC C-terminal domain RK54_RS21130 PF00577 Outer membrane usher protein RK54_RS21130 PF13954 PapC N-terminal domain RK54_RS21135 PF00419 Fimbrial protein RK54_RS21140 PF00419 Fimbrial protein RK54_RS21145 PF00884 Sulfatase RK54_RS21145 PF08019 Phosphoethanolamine transferase EptA/EptB RK54_RS21160 PF00356 Bacterial regulatory proteins, lacI family RK54_RS21170 PF00860 Permease family RK54_RS21175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK54_RS21180 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS21185 PF12911 N-terminal TM domain of oligopeptide transport permease C RK54_RS21185 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS21190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK54_RS21190 PF00005 ABC transporter RK54_RS21195 PF00005 ABC transporter RK54_RS21195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK54_RS21200 PF03222 Tryptophan/tyrosine permease family RK54_RS21215 PF13940 Toxin Ldr, type I toxin-antitoxin system RK54_RS21220 PF11658 Cellulose biosynthesis protein BcsG RK54_RS21225 PF11120 Cellulose biosynthesis protein BcsF RK54_RS21230 PF10995 Cellulose biosynthesis GIL RK54_RS21235 PF10945 Cellulose biosynthesis protein BcsR RK54_RS21240 PF06564 Cellulose biosynthesis protein BcsQ RK54_RS21245 PF00535 Glycosyl transferase family 2 RK54_RS21245 PF07238 PilZ domain RK54_RS21250 PF03170 Bacterial cellulose synthase subunit RK54_RS21255 PF01270 Glycosyl hydrolases family 8 RK54_RS21260 PF13176 Tetratricopeptide repeat RK54_RS21260 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) RK54_RS21270 PF00672 HAMP domain RK54_RS21270 PF00990 Diguanylate cyclase, GGDEF domain RK54_RS21270 PF00563 EAL domain RK54_RS21270 PF17154 Gammaproteobacterial periplasmic sensor domain RK54_RS21275 PF00375 Sodium:dicarboxylate symporter family RK54_RS21280 PF00675 Insulinase (Peptidase family M16) RK54_RS21280 PF05193 Peptidase M16 inactive domain RK54_RS21285 PF00294 pfkB family carbohydrate kinase RK54_RS21290 PF00563 EAL domain RK54_RS21295 PF05170 AsmA family RK54_RS21300 PF00083 Sugar (and other) transporter RK54_RS21300 PF07690 Major Facilitator Superfamily RK54_RS21305 PF03631 Virulence factor BrkB RK54_RS21310 PF03466 LysR substrate binding domain RK54_RS21310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS21315 PF00196 Bacterial regulatory proteins, luxR family RK54_RS21330 PF01204 Trehalase RK54_RS21335 PF00392 Bacterial regulatory proteins, gntR family RK54_RS21335 PF07702 UTRA domain RK54_RS21340 PF01380 SIS domain RK54_RS21345 PF00294 pfkB family carbohydrate kinase RK54_RS21350 PF03605 Anaerobic c4-dicarboxylate membrane transporter RK54_RS21355 PF00710 Asparaginase, N-terminal RK54_RS21355 PF17763 Glutaminase/Asparaginase C-terminal domain RK54_RS21360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RK54_RS21360 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS21365 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RK54_RS21370 PF01569 PAP2 superfamily RK54_RS21375 PF01432 Peptidase family M3 RK54_RS21380 PF04445 Putative SAM-dependent methyltransferase RK54_RS21385 PF00854 POT family RK54_RS21390 PF00582 Universal stress protein family RK54_RS21395 PF10625 Universal stress protein B (UspB) RK54_RS21400 PF01384 Phosphate transporter family RK54_RS21410 PF13533 Biotin-lipoyl like RK54_RS21415 PF00005 ABC transporter RK54_RS21425 PF01402 Ribbon-helix-helix protein, copG family RK54_RS21425 PF08753 NikR C terminal nickel binding domain RK54_RS21430 PF01648 4'-phosphopantetheinyl transferase superfamily RK54_RS21435 PF01594 AI-2E family transporter RK54_RS21440 PF07690 Major Facilitator Superfamily RK54_RS21445 PF08786 DcrB RK54_RS21450 PF02592 Putative vitamin uptake transporter RK54_RS21455 PF01206 Sulfurtransferase TusA RK54_RS21460 PF00672 HAMP domain RK54_RS21460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RK54_RS21460 PF02203 Tar ligand binding domain homologue RK54_RS21465 PF00403 Heavy-metal-associated domain RK54_RS21470 PF07947 YhhN family RK54_RS21475 PF10694 Protein of unknown function (DUF2500) RK54_RS21480 PF06611 Protein of unknown function (DUF1145) RK54_RS21490 PF00448 SRP54-type protein, GTPase domain RK54_RS21490 PF02881 SRP54-type protein, helical bundle domain RK54_RS21495 PF00005 ABC transporter RK54_RS21500 PF18075 FtsX extracellular domain RK54_RS21500 PF02687 FtsX-like permease family RK54_RS21505 PF04542 Sigma-70 region 2 RK54_RS21505 PF04545 Sigma-70, region 4 RK54_RS21510 PF13458 Periplasmic binding protein RK54_RS21520 PF12568 Acetyltransferase (GNAT) domain, PanZ RK54_RS21525 PF13458 Periplasmic binding protein RK54_RS21530 PF02653 Branched-chain amino acid transport system / permease component RK54_RS21535 PF02653 Branched-chain amino acid transport system / permease component RK54_RS21535 PF11862 Domain of unknown function (DUF3382) RK54_RS21540 PF12399 Branched-chain amino acid ATP-binding cassette transporter RK54_RS21540 PF00005 ABC transporter RK54_RS21545 PF00005 ABC transporter RK54_RS21555 PF13416 Bacterial extracellular solute-binding protein RK54_RS21560 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS21565 PF00528 Binding-protein-dependent transport system inner membrane component RK54_RS21570 PF00005 ABC transporter RK54_RS21570 PF17912 MalK OB fold domain RK54_RS21575 PF03009 Glycerophosphoryl diester phosphodiesterase family RK54_RS21580 PF10956 Protein of unknown function (DUF2756) RK54_RS21590 PF02126 Phosphotriesterase family RK54_RS21605 PF00294 pfkB family carbohydrate kinase RK54_RS21610 PF00583 Acetyltransferase (GNAT) family RK54_RS21615 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RK54_RS21615 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RK54_RS21620 PF02678 Pirin RK54_RS21620 PF17954 Quercetinase C-terminal cupin domain RK54_RS21625 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RK54_RS21625 PF00356 Bacterial regulatory proteins, lacI family RK54_RS21630 PF01202 Shikimate kinase RK54_RS21635 PF02447 GntP family permease RK54_RS21640 PF01914 MarC family integral membrane protein RK54_RS21645 PF01118 Semialdehyde dehydrogenase, NAD binding domain RK54_RS21645 PF02774 Semialdehyde dehydrogenase, dimerisation domain RK54_RS21650 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RK54_RS21650 PF00128 Alpha amylase, catalytic domain RK54_RS21650 PF02806 Alpha amylase, C-terminal all-beta domain RK54_RS21655 PF00128 Alpha amylase, catalytic domain RK54_RS21655 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RK54_RS21655 PF18390 Glycogen debranching enzyme C-terminal domain RK54_RS21660 PF00483 Nucleotidyl transferase RK54_RS21665 PF00534 Glycosyl transferases group 1 RK54_RS21665 PF08323 Starch synthase catalytic domain RK54_RS21670 PF00343 Carbohydrate phosphorylase RK54_RS21675 PF09339 IclR helix-turn-helix domain RK54_RS21675 PF01614 Bacterial transcriptional regulator RK54_RS21680 PF00701 Dihydrodipicolinate synthetase family RK54_RS21685 PF00920 Dehydratase family RK54_RS21690 PF07690 Major Facilitator Superfamily RK54_RS21695 PF00465 Iron-containing alcohol dehydrogenase RK54_RS21710 PF01266 FAD dependent oxidoreductase RK54_RS21710 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RK54_RS21715 PF00581 Rhodanese-like domain RK54_RS21720 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease RK54_RS21720 PF01694 Rhomboid family RK54_RS21725 PF08220 DeoR-like helix-turn-helix domain RK54_RS21725 PF00455 DeoR C terminal sensor domain RK54_RS21730 PF00158 Sigma-54 interaction domain RK54_RS21730 PF06956 Regulator of RNA terminal phosphate cyclase RK54_RS21740 PF01139 tRNA-splicing ligase RtcB RK54_RS21745 PF01137 RNA 3'-terminal phosphate cyclase RK54_RS21745 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain RK54_RS21750 PF04221 RelB antitoxin RK54_RS21755 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ RK54_RS21760 PF00196 Bacterial regulatory proteins, luxR family RK54_RS21760 PF17874 MalT-like TPR region RK54_RS21765 PF00343 Carbohydrate phosphorylase RK54_RS21770 PF02446 4-alpha-glucanotransferase RK54_RS21775 PF02447 GntP family permease RK54_RS21780 PF01521 Iron-sulphur cluster biosynthesis RK54_RS21780 PF01106 NifU-like domain RK54_RS21785 PF00156 Phosphoribosyl transferase domain RK54_RS21790 PF00561 alpha/beta hydrolase fold RK54_RS21795 PF04754 Putative transposase, YhgA-like RK54_RS21800 PF09012 FeoC like transcriptional regulator RK54_RS21805 PF07664 Ferrous iron transport protein B C terminus RK54_RS21805 PF17910 FeoB cytosolic helical domain RK54_RS21805 PF07670 Nucleoside recognition RK54_RS21805 PF02421 Ferrous iron transport protein B RK54_RS21810 PF04023 FeoA domain RK54_RS21820 PF16921 Tex protein YqgF-like domain RK54_RS21820 PF09371 Tex-like protein N-terminal domain RK54_RS21820 PF00575 S1 RNA binding domain RK54_RS21820 PF17674 HHH domain RK54_RS21825 PF03449 Transcription elongation factor, N-terminal RK54_RS21825 PF01272 Transcription elongation factor, GreA/GreB, C-term RK54_RS21830 PF00072 Response regulator receiver domain RK54_RS21830 PF00486 Transcriptional regulatory protein, C terminal RK54_RS21835 PF00672 HAMP domain RK54_RS21835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS21835 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS21840 PF01293 Phosphoenolpyruvate carboxykinase RK54_RS21845 PF13687 Domain of unknown function (DUF4153) RK54_RS21850 PF01430 Hsp33 protein RK54_RS21855 PF01479 S4 domain RK54_RS21860 PF13419 Haloacid dehalogenase-like hydrolase RK54_RS21865 PF07095 Intracellular growth attenuator protein IgaA RK54_RS21870 PF00293 NUDIX domain RK54_RS21875 PF17092 Penicillin-binding protein OB-like domain RK54_RS21875 PF00912 Transglycosylase RK54_RS21875 PF00905 Penicillin binding protein transpeptidase domain RK54_RS21885 PF05137 Fimbrial assembly protein (PilN) RK54_RS21895 PF10748 DNA utilization proteins HofP RK54_RS21900 PF00263 Bacterial type II and III secretion system protein RK54_RS21900 PF03958 Bacterial type II/III secretion system short domain RK54_RS21910 PF01202 Shikimate kinase RK54_RS21915 PF01761 3-dehydroquinate synthase RK54_RS21920 PF05036 Sporulation related domain RK54_RS21925 PF02086 D12 class N6 adenine-specific DNA methyltransferase RK54_RS21930 PF00834 Ribulose-phosphate 3 epimerase family RK54_RS21935 PF13419 Haloacid dehalogenase-like hydrolase RK54_RS21940 PF00579 tRNA synthetases class I (W and Y) RK54_RS21945 PF13978 Protein of unknown function (DUF4223) RK54_RS21955 PF14824 Sirohaem biosynthesis protein central RK54_RS21955 PF10414 Sirohaem synthase dimerisation region RK54_RS21955 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RK54_RS21960 PF01226 Formate/nitrite transporter RK54_RS21965 PF13806 Rieske-like [2Fe-2S] domain RK54_RS21970 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RK54_RS21970 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS21970 PF18267 Rubredoxin NAD+ reductase C-terminal domain RK54_RS21970 PF04324 BFD-like [2Fe-2S] binding domain RK54_RS21970 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RK54_RS21975 PF07690 Major Facilitator Superfamily RK54_RS21980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RK54_RS21985 PF10832 Protein of unknown function (DUF2559) RK54_RS21990 PF02661 Fic/DOC family RK54_RS21995 PF00117 Glutamine amidotransferase class-I RK54_RS22000 PF00202 Aminotransferase class-III RK54_RS22005 PF12805 FUSC-like inner membrane protein yccS RK54_RS22010 PF00027 Cyclic nucleotide-binding domain RK54_RS22010 PF13545 Crp-like helix-turn-helix domain RK54_RS22015 PF02566 OsmC-like protein RK54_RS22020 PF00485 Phosphoribulokinase / Uridine kinase family RK54_RS22025 PF06794 Uncharacterised protein family (UPF0270) RK54_RS22030 PF00561 alpha/beta hydrolase fold RK54_RS22035 PF08803 Putative mono-oxygenase ydhR RK54_RS22040 PF03466 LysR substrate binding domain RK54_RS22040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS22045 PF12848 ABC transporter RK54_RS22045 PF00005 ABC transporter RK54_RS22050 PF02525 Flavodoxin-like fold RK54_RS22055 PF00999 Sodium/hydrogen exchanger family RK54_RS22055 PF02254 TrkA-N domain RK54_RS22060 PF09526 Probable metal-binding protein (DUF2387) RK54_RS22065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RK54_RS22075 PF04102 SlyX RK54_RS22080 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RK54_RS22080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RK54_RS22085 PF13309 HTH domain RK54_RS22085 PF08348 YheO-like PAS domain RK54_RS22090 PF02635 DsrE/DsrF-like family RK54_RS22095 PF02635 DsrE/DsrF-like family RK54_RS22100 PF04077 DsrH like protein RK54_RS22105 PF00164 Ribosomal protein S12/S23 RK54_RS22110 PF00177 Ribosomal protein S7p/S5e RK54_RS22115 PF03144 Elongation factor Tu domain 2 RK54_RS22115 PF00679 Elongation factor G C-terminus RK54_RS22115 PF14492 Elongation Factor G, domain II RK54_RS22115 PF03764 Elongation factor G, domain IV RK54_RS22115 PF00009 Elongation factor Tu GTP binding domain RK54_RS22120 PF03143 Elongation factor Tu C-terminal domain RK54_RS22120 PF03144 Elongation factor Tu domain 2 RK54_RS22120 PF00009 Elongation factor Tu GTP binding domain RK54_RS22135 PF04324 BFD-like [2Fe-2S] binding domain RK54_RS22140 PF00210 Ferritin-like domain RK54_RS22145 PF01478 Type IV leader peptidase family RK54_RS22155 PF00338 Ribosomal protein S10p/S20e RK54_RS22160 PF00297 Ribosomal protein L3 RK54_RS22165 PF00573 Ribosomal protein L4/L1 family RK54_RS22170 PF00276 Ribosomal protein L23 RK54_RS22175 PF00181 Ribosomal Proteins L2, RNA binding domain RK54_RS22175 PF03947 Ribosomal Proteins L2, C-terminal domain RK54_RS22180 PF00203 Ribosomal protein S19 RK54_RS22185 PF00237 Ribosomal protein L22p/L17e RK54_RS22190 PF00189 Ribosomal protein S3, C-terminal domain RK54_RS22190 PF07650 KH domain RK54_RS22195 PF00252 Ribosomal protein L16p/L10e RK54_RS22200 PF00831 Ribosomal L29 protein RK54_RS22205 PF00366 Ribosomal protein S17 RK54_RS22210 PF00238 Ribosomal protein L14p/L23e RK54_RS22215 PF00467 KOW motif RK54_RS22215 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RK54_RS22220 PF00673 ribosomal L5P family C-terminus RK54_RS22220 PF00281 Ribosomal protein L5 RK54_RS22225 PF00253 Ribosomal protein S14p/S29e RK54_RS22230 PF00410 Ribosomal protein S8 RK54_RS22235 PF00347 Ribosomal protein L6 RK54_RS22240 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RK54_RS22245 PF00333 Ribosomal protein S5, N-terminal domain RK54_RS22245 PF03719 Ribosomal protein S5, C-terminal domain RK54_RS22250 PF00327 Ribosomal protein L30p/L7e RK54_RS22255 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RK54_RS22260 PF00344 SecY translocase RK54_RS22265 PF00444 Ribosomal protein L36 RK54_RS22270 PF00416 Ribosomal protein S13/S18 RK54_RS22275 PF00411 Ribosomal protein S11 RK54_RS22280 PF01479 S4 domain RK54_RS22280 PF00163 Ribosomal protein S4/S9 N-terminal domain RK54_RS22285 PF01000 RNA polymerase Rpb3/RpoA insert domain RK54_RS22285 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RK54_RS22285 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RK54_RS22290 PF01196 Ribosomal protein L17 RK54_RS22295 PF09350 Domain of unknown function (DUF1992) RK54_RS22300 PF13411 MerR HTH family regulatory protein RK54_RS22305 PF03889 Alternative ribosome-rescue factor A RK54_RS22310 PF01741 Large-conductance mechanosensitive channel, MscL RK54_RS22315 PF02080 TrkA-C domain RK54_RS22315 PF02254 TrkA-N domain RK54_RS22320 PF01029 NusB family RK54_RS22320 PF01189 16S rRNA methyltransferase RsmB/F RK54_RS22325 PF02911 Formyl transferase, C-terminal domain RK54_RS22325 PF00551 Formyl transferase RK54_RS22330 PF01327 Polypeptide deformylase RK54_RS22335 PF17782 DprA winged helix domain RK54_RS22335 PF02481 DNA recombination-mediator protein A RK54_RS22340 PF04361 Protein of unknown function (DUF494) RK54_RS22345 PF01396 Topoisomerase DNA binding C4 zinc finger RK54_RS22350 PF01300 Telomere recombination RK54_RS22355 PF08501 Shikimate dehydrogenase substrate binding domain RK54_RS22355 PF01488 Shikimate / quinate 5-dehydrogenase RK54_RS22355 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RK54_RS22360 PF07369 Protein of unknown function (DUF1488) RK54_RS22365 PF00132 Bacterial transferase hexapeptide (six repeats) RK54_RS22405 PF00873 AcrB/AcrD/AcrF family RK54_RS22410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RK54_RS22410 PF00529 HlyD membrane-fusion protein of T1SS RK54_RS22415 PF08361 MAATS-type transcriptional repressor, C-terminal region RK54_RS22415 PF00440 Bacterial regulatory proteins, tetR family RK54_RS22420 PF03707 Bacterial signalling protein N terminal repeat RK54_RS22420 PF00990 Diguanylate cyclase, GGDEF domain RK54_RS22420 PF00563 EAL domain RK54_RS22425 PF10831 Protein of unknown function (DUF2556) RK54_RS22430 PF01555 DNA methylase RK54_RS22435 PF02954 Bacterial regulatory protein, Fis family RK54_RS22440 PF01207 Dihydrouridine synthase (Dus) RK54_RS22450 PF00474 Sodium:solute symporter family RK54_RS22455 PF06196 Protein of unknown function (DUF997) RK54_RS22460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RK54_RS22460 PF02785 Biotin carboxylase C-terminal domain RK54_RS22460 PF00289 Biotin carboxylase, N-terminal domain RK54_RS22465 PF00364 Biotin-requiring enzyme RK54_RS22470 PF01794 Ferric reductase like transmembrane component RK54_RS22475 PF00174 Oxidoreductase molybdopterin binding domain RK54_RS22480 PF08240 Alcohol dehydrogenase GroES-like domain RK54_RS22480 PF00107 Zinc-binding dehydrogenase RK54_RS22485 PF00990 Diguanylate cyclase, GGDEF domain RK54_RS22485 PF17157 Gammaproteobacterial periplasmic sensor domain RK54_RS22485 PF00563 EAL domain RK54_RS22505 PF04085 rod shape-determining protein MreC RK54_RS22510 PF04093 rod shape-determining protein MreD RK54_RS22515 PF02545 Maf-like protein RK54_RS22520 PF00575 S1 RNA binding domain RK54_RS22520 PF10150 Ribonuclease E/G family RK54_RS22525 PF13502 AsmA-like C-terminal region RK54_RS22525 PF13116 Protein of unknown function RK54_RS22530 PF01523 Putative modulator of DNA gyrase RK54_RS22535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS22535 PF03466 LysR substrate binding domain RK54_RS22540 PF07869 Protein of unknown function (DUF1656) RK54_RS22545 PF13533 Biotin-lipoyl like RK54_RS22550 PF04632 Fusaric acid resistance protein family RK54_RS22555 PF01337 Barstar (barnase inhibitor) RK54_RS22560 PF07338 Protein of unknown function (DUF1471) RK54_RS22565 PF07338 Protein of unknown function (DUF1471) RK54_RS22570 PF02863 Arginine repressor, C-terminal domain RK54_RS22570 PF01316 Arginine repressor, DNA binding domain RK54_RS22575 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RK54_RS22575 PF00056 lactate/malate dehydrogenase, NAD binding domain RK54_RS22580 PF07702 UTRA domain RK54_RS22580 PF00392 Bacterial regulatory proteins, gntR family RK54_RS22590 PF00939 Sodium:sulfate symporter transmembrane region RK54_RS22595 PF05681 Fumarate hydratase (Fumerase) RK54_RS22600 PF05683 Fumarase C-terminus RK54_RS22605 PF04277 Oxaloacetate decarboxylase, gamma chain RK54_RS22610 PF02436 Conserved carboxylase domain RK54_RS22610 PF00682 HMGL-like RK54_RS22610 PF00364 Biotin-requiring enzyme RK54_RS22615 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit RK54_RS22620 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase RK54_RS22625 PF13180 PDZ domain RK54_RS22630 PF13180 PDZ domain RK54_RS22630 PF00595 PDZ domain RK54_RS22635 PF06295 Protein of unknown function (DUF1043) RK54_RS22640 PF03969 AFG1-like ATPase RK54_RS22645 PF00572 Ribosomal protein L13 RK54_RS22650 PF00380 Ribosomal protein S9/S16 RK54_RS22655 PF02798 Glutathione S-transferase, N-terminal domain RK54_RS22655 PF00043 Glutathione S-transferase, C-terminal domain RK54_RS22660 PF04386 Stringent starvation protein B RK54_RS22665 PF07729 FCD domain RK54_RS22665 PF00392 Bacterial regulatory proteins, gntR family RK54_RS22670 PF00701 Dihydrodipicolinate synthetase family RK54_RS22675 PF07690 Major Facilitator Superfamily RK54_RS22680 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase RK54_RS22685 PF00480 ROK family RK54_RS22690 PF04074 YhcH/YjgK/YiaL RK54_RS22695 PF07969 Amidohydrolase family RK54_RS22700 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RK54_RS22705 PF17761 DUF1016 N-terminal domain RK54_RS22705 PF06250 YhcG PDDEXK nuclease domain RK54_RS22710 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RK54_RS22710 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS22715 PF00310 Glutamine amidotransferases class-II RK54_RS22715 PF01645 Conserved region in glutamate synthase RK54_RS22715 PF01493 GXGXG motif RK54_RS22715 PF04898 Glutamate synthase central domain RK54_RS22725 PF04055 Radical SAM superfamily RK54_RS22725 PF16199 Radical_SAM C-terminal domain RK54_RS22730 PF18415 Histidine kinase receptor ArcB trans-membrane domain RK54_RS22730 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS22730 PF01627 Hpt domain RK54_RS22730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS22730 PF00072 Response regulator receiver domain RK54_RS22730 PF00989 PAS fold RK54_RS22740 PF00912 Transglycosylase RK54_RS22745 PF10707 PhoP regulatory network protein YrbL RK54_RS22755 PF00381 PTS HPr component phosphorylation site RK54_RS22760 PF03668 P-loop ATPase protein family RK54_RS22765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK54_RS22770 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RK54_RS22775 PF00309 Sigma-54 factor, Activator interacting domain (AID) RK54_RS22775 PF04963 Sigma-54 factor, core binding domain RK54_RS22775 PF04552 Sigma-54, DNA binding domain RK54_RS22780 PF12399 Branched-chain amino acid ATP-binding cassette transporter RK54_RS22780 PF00005 ABC transporter RK54_RS22785 PF03968 OstA-like protein RK54_RS22790 PF06835 Lipopolysaccharide-assembly, LptC-related RK54_RS22800 PF00571 CBS domain RK54_RS22800 PF01380 SIS domain RK54_RS22805 PF01699 Sodium/calcium exchanger protein RK54_RS22810 PF00005 ABC transporter RK54_RS22815 PF02405 Permease MlaE RK54_RS22820 PF02470 MlaD protein RK54_RS22825 PF05494 MlaC protein RK54_RS22830 PF13466 STAS domain RK54_RS22835 PF01722 BolA-like protein RK54_RS22840 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RK54_RS22845 PF13693 Winged helix-turn-helix DNA-binding RK54_RS22850 PF00348 Polyprenyl synthetase RK54_RS22855 PF00829 Ribosomal prokaryotic L21 protein RK54_RS22860 PF01016 Ribosomal L27 protein RK54_RS22865 PF00892 EamA-like transporter family RK54_RS22870 PF01926 50S ribosome-binding GTPase RK54_RS22870 PF01018 GTP1/OBG RK54_RS22875 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RK54_RS22880 PF01272 Transcription elongation factor, GreA/GreB, C-term RK54_RS22880 PF03449 Transcription elongation factor, N-terminal RK54_RS22885 PF01985 CRS1 / YhbY (CRM) domain RK54_RS22890 PF01728 FtsJ-like methyltransferase RK54_RS22900 PF00004 ATPase family associated with various cellular activities (AAA) RK54_RS22900 PF06480 FtsH Extracellular RK54_RS22900 PF01434 Peptidase family M41 RK54_RS22900 PF17862 AAA+ lid domain RK54_RS22905 PF00809 Pterin binding enzyme RK54_RS22910 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RK54_RS22910 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RK54_RS22910 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RK54_RS22910 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RK54_RS22915 PF03840 Preprotein translocase SecG subunit RK54_RS22930 PF00764 Arginosuccinate synthase RK54_RS22940 PF17384 RimP C-terminal SH3 domain RK54_RS22940 PF02576 RimP N-terminal domain RK54_RS22945 PF08529 NusA N-terminal domain RK54_RS22945 PF13184 NusA-like KH domain RK54_RS22950 PF11987 Translation-initiation factor 2 RK54_RS22950 PF04760 Translation initiation factor IF-2, N-terminal region RK54_RS22950 PF00009 Elongation factor Tu GTP binding domain RK54_RS22950 PF08364 Bacterial translation initiation factor IF-2 associated region RK54_RS22955 PF02033 Ribosome-binding factor A RK54_RS22960 PF16198 tRNA pseudouridylate synthase B C-terminal domain RK54_RS22960 PF09157 Pseudouridine synthase II TruB, C-terminal RK54_RS22960 PF01509 TruB family pseudouridylate synthase (N terminal domain) RK54_RS22965 PF00312 Ribosomal protein S15 RK54_RS22970 PF00575 S1 RNA binding domain RK54_RS22970 PF00013 KH domain RK54_RS22970 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RK54_RS22970 PF01138 3' exoribonuclease family, domain 1 RK54_RS22970 PF03725 3' exoribonuclease family, domain 2 RK54_RS22975 PF07719 Tetratricopeptide repeat RK54_RS22975 PF13181 Tetratricopeptide repeat RK54_RS22980 PF03880 DbpA RNA binding domain RK54_RS22980 PF00270 DEAD/DEAH box helicase RK54_RS22980 PF12343 Cold shock protein DEAD box A RK54_RS22980 PF00271 Helicase conserved C-terminal domain RK54_RS22985 PF03222 Tryptophan/tyrosine permease family RK54_RS22990 PF00296 Luciferase-like monooxygenase RK54_RS22995 PF01136 Peptidase family U32 RK54_RS23000 PF01136 Peptidase family U32 RK54_RS23005 PF02036 SCP-2 sterol transfer family RK54_RS23010 PF13508 Acetyltransferase (GNAT) domain RK54_RS23015 PF01541 GIY-YIG catalytic domain RK54_RS23025 PF01965 DJ-1/PfpI family RK54_RS23030 PF13460 NAD(P)H-binding RK54_RS23035 PF04972 BON domain RK54_RS23040 PF13580 SIS domain RK54_RS23045 PF02021 Uncharacterised protein family UPF0102 RK54_RS23050 PF04348 LppC putative lipoprotein RK54_RS23055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RK54_RS23060 PF08220 DeoR-like helix-turn-helix domain RK54_RS23065 PF00107 Zinc-binding dehydrogenase RK54_RS23065 PF08240 Alcohol dehydrogenase GroES-like domain RK54_RS23070 PF03611 PTS system sugar-specific permease component RK54_RS23075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK54_RS23080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK54_RS23085 PF08013 Tagatose 6 phosphate kinase RK54_RS23090 PF01116 Fructose-bisphosphate aldolase class-II RK54_RS23095 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RK54_RS23095 PF08666 SAF domain RK54_RS23100 PF03328 HpcH/HpaI aldolase/citrate lyase family RK54_RS23105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RK54_RS23105 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RK54_RS23110 PF02595 Glycerate kinase family RK54_RS23130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS23130 PF03466 LysR substrate binding domain RK54_RS23135 PF00291 Pyridoxal-phosphate dependent enzyme RK54_RS23140 PF03222 Tryptophan/tyrosine permease family RK54_RS23145 PF00871 Acetokinase family RK54_RS23150 PF02901 Pyruvate formate lyase-like RK54_RS23150 PF01228 Glycine radical RK54_RS23155 PF03313 Serine dehydratase alpha chain RK54_RS23155 PF03315 Serine dehydratase beta chain RK54_RS23165 PF03313 Serine dehydratase alpha chain RK54_RS23175 PF17954 Quercetinase C-terminal cupin domain RK54_RS23175 PF02678 Pirin RK54_RS23180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS23180 PF03466 LysR substrate binding domain RK54_RS23185 PF05656 Protein of unknown function (DUF805) RK54_RS23190 PF13409 Glutathione S-transferase, N-terminal domain RK54_RS23195 PF07681 DoxX RK54_RS23200 PF13997 YqjK-like protein RK54_RS23205 PF07332 Putative Actinobacterial Holin-X, holin superfamily III RK54_RS23210 PF05957 Bacterial protein of unknown function (DUF883) RK54_RS23215 PF06476 Protein of unknown function (DUF1090) RK54_RS23220 PF13721 SecD export protein N-terminal TM region RK54_RS23225 PF09335 SNARE associated Golgi protein RK54_RS23235 PF00375 Sodium:dicarboxylate symporter family RK54_RS23240 PF03741 Integral membrane protein TerC family RK54_RS23245 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RK54_RS23250 PF02698 DUF218 domain RK54_RS23255 PF01863 Protein of unknown function DUF45 RK54_RS23260 PF05175 Methyltransferase small domain RK54_RS23265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RK54_RS23265 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK54_RS23270 PF00202 Aminotransferase class-III RK54_RS23280 PF08447 PAS fold RK54_RS23280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RK54_RS23285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RK54_RS23285 PF00672 HAMP domain RK54_RS23285 PF02203 Tar ligand binding domain homologue RK54_RS23290 PF03551 Transcriptional regulator PadR-like family RK54_RS23295 PF08021 Siderophore-interacting FAD-binding domain RK54_RS23295 PF04954 Siderophore-interacting protein RK54_RS23305 PF03167 Uracil DNA glycosylase superfamily RK54_RS23310 PF04545 Sigma-70, region 4 RK54_RS23310 PF04539 Sigma-70 region 3 RK54_RS23310 PF04542 Sigma-70 region 2 RK54_RS23310 PF00140 Sigma-70 factor, region 1.2 RK54_RS23310 PF04546 Sigma-70, non-essential region RK54_RS23310 PF03979 Sigma-70 factor, region 1.1 RK54_RS23315 PF08275 DNA primase catalytic core, N-terminal domain RK54_RS23315 PF01807 CHC2 zinc finger RK54_RS23315 PF08278 DNA primase DnaG DnaB-binding RK54_RS23315 PF10410 DnaB-helicase binding domain of primase RK54_RS23320 PF01165 Ribosomal protein S21 RK54_RS23330 PF00814 Glycoprotease family RK54_RS23335 PF05681 Fumarate hydratase (Fumerase) RK54_RS23340 PF02660 Glycerol-3-phosphate acyltransferase RK54_RS23345 PF02152 Dihydroneopterin aldolase RK54_RS23350 PF02673 Bacitracin resistance protein BacA RK54_RS23355 PF01743 Poly A polymerase head domain RK54_RS23355 PF01966 HD domain RK54_RS23355 PF12627 Probable RNA and SrmB- binding site of polymerase A RK54_RS23360 PF08239 Bacterial SH3 domain RK54_RS23370 PF01928 CYTH domain RK54_RS23375 PF08335 GlnD PII-uridylyltransferase RK54_RS23375 PF03710 Glutamate-ammonia ligase adenylyltransferase RK54_RS23380 PF00294 pfkB family carbohydrate kinase RK54_RS23380 PF01467 Cytidylyltransferase-like RK54_RS23390 PF01145 SPFH domain / Band 7 family RK54_RS23390 PF15975 Flotillin RK54_RS23395 PF07290 Protein of unknown function (DUF1449) RK54_RS23400 PF08971 Glycogen synthesis protein RK54_RS23405 PF04380 Membrane fusogenic activity RK54_RS23410 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RK54_RS23415 PF02600 Disulfide bond formation protein DsbB RK54_RS23420 PF01323 DSBA-like thioredoxin domain RK54_RS23425 PF17425 Arylsulfotransferase Ig-like domain RK54_RS23425 PF05935 Arylsulfotransferase (ASST) RK54_RS23435 PF02535 ZIP Zinc transporter RK54_RS23440 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RK54_RS23445 PF03738 Glutathionylspermidine synthase preATP-grasp RK54_RS23450 PF06693 Protein of unknown function (DUF1190) RK54_RS23460 PF02321 Outer membrane efflux protein RK54_RS23465 PF00293 NUDIX domain RK54_RS23470 PF06853 Protein of unknown function (DUF1249) RK54_RS23475 PF00149 Calcineurin-like phosphoesterase RK54_RS23480 PF05728 Uncharacterised protein family (UPF0227) RK54_RS23485 PF00204 DNA gyrase B RK54_RS23485 PF00986 DNA gyrase B subunit, carboxyl terminus RK54_RS23485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS23485 PF01751 Toprim domain RK54_RS23490 PF03992 Antibiotic biosynthesis monooxygenase RK54_RS23495 PF02525 Flavodoxin-like fold RK54_RS23500 PF00512 His Kinase A (phospho-acceptor) domain RK54_RS23500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK54_RS23500 PF08521 Two-component sensor kinase N-terminal RK54_RS23505 PF00072 Response regulator receiver domain RK54_RS23505 PF00486 Transcriptional regulatory protein, C terminal RK54_RS23510 PF04076 Bacterial OB fold (BOF) protein RK54_RS23515 PF06445 GyrI-like small molecule binding domain RK54_RS23520 PF03989 DNA gyrase C-terminal domain, beta-propeller RK54_RS23520 PF00521 DNA gyrase/topoisomerase IV, subunit A RK54_RS23525 PF01553 Acyltransferase RK54_RS23530 PF00394 Multicopper oxidase RK54_RS23530 PF07732 Multicopper oxidase RK54_RS23530 PF07731 Multicopper oxidase RK54_RS23535 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RK54_RS23545 PF03480 Bacterial extracellular solute-binding protein, family 7 RK54_RS23550 PF04055 Radical SAM superfamily RK54_RS23550 PF11842 Domain of unknown function (DUF3362) RK54_RS23550 PF08497 Radical SAM N-terminal RK54_RS23565 PF00939 Sodium:sulfate symporter transmembrane region RK54_RS23570 PF00248 Aldo/keto reductase family RK54_RS23575 PF00465 Iron-containing alcohol dehydrogenase RK54_RS23580 PF12833 Helix-turn-helix domain RK54_RS23580 PF06719 AraC-type transcriptional regulator N-terminus RK54_RS23585 PF09335 SNARE associated Golgi protein RK54_RS23590 PF01053 Cys/Met metabolism PLP-dependent enzyme RK54_RS23600 PF01618 MotA/TolQ/ExbB proton channel family RK54_RS23605 PF02472 Biopolymer transport protein ExbD/TolR RK54_RS23630 PF03350 Uncharacterized protein family, UPF0114 RK54_RS23635 PF00672 HAMP domain RK54_RS23635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RK54_RS23635 PF02203 Tar ligand binding domain homologue RK54_RS23640 PF11115 Protein of unknown function (DUF2623) RK54_RS23650 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RK54_RS23650 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RK54_RS23655 PF13247 4Fe-4S dicluster domain RK54_RS23660 PF03916 Polysulphide reductase, NrfD RK54_RS23665 PF00374 Nickel-dependent hydrogenase RK54_RS23670 PF01750 Hydrogenase maturation protease RK54_RS23675 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE RK54_RS23680 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RK54_RS23685 PF01455 HupF/HypC family RK54_RS23690 PF01497 Periplasmic binding protein RK54_RS23700 PF02798 Glutathione S-transferase, N-terminal domain RK54_RS23705 PF05257 CHAP domain RK54_RS23705 PF03738 Glutathionylspermidine synthase preATP-grasp RK54_RS23720 PF02614 Glucuronate isomerase RK54_RS23725 PF08125 Mannitol dehydrogenase C-terminal domain RK54_RS23725 PF01232 Mannitol dehydrogenase Rossmann domain RK54_RS23730 PF03786 D-mannonate dehydratase (UxuA) RK54_RS23735 PF07690 Major Facilitator Superfamily RK54_RS23745 PF01522 Polysaccharide deacetylase RK54_RS23755 PF04965 Gene 25-like lysozyme RK54_RS23760 PF00171 Aldehyde dehydrogenase family RK54_RS23765 PF01266 FAD dependent oxidoreductase RK54_RS23775 PF13520 Amino acid permease RK54_RS23785 PF00196 Bacterial regulatory proteins, luxR family RK54_RS23790 PF04055 Radical SAM superfamily RK54_RS23795 PF00884 Sulfatase RK54_RS23800 PF03466 LysR substrate binding domain RK54_RS23800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS23805 PF03328 HpcH/HpaI aldolase/citrate lyase family RK54_RS23810 PF01575 MaoC like domain RK54_RS23815 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RK54_RS23815 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RK54_RS23820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK54_RS23830 PF04474 Protein of unknown function (DUF554) RK54_RS23840 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RK54_RS23840 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RK54_RS23840 PF01276 Orn/Lys/Arg decarboxylase, major domain RK54_RS23845 PF03825 Nucleoside H+ symporter RK54_RS23850 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RK54_RS23850 PF01464 Transglycosylase SLT domain RK54_RS23855 PF04362 Bacterial Fe(2+) trafficking RK54_RS23860 PF00730 HhH-GPD superfamily base excision DNA repair protein RK54_RS23860 PF14815 NUDIX domain RK54_RS23860 PF00633 Helix-hairpin-helix motif RK54_RS23870 PF02390 Putative methyltransferase RK54_RS23875 PF04320 Protein with unknown function (DUF469) RK54_RS23880 PF11101 Protein of unknown function (DUF2884) RK54_RS23885 PF17763 Glutaminase/Asparaginase C-terminal domain RK54_RS23885 PF00710 Asparaginase, N-terminal RK54_RS23890 PF06717 Protein of unknown function (DUF1202) RK54_RS23895 PF06969 HemN C-terminal domain RK54_RS23895 PF04055 Radical SAM superfamily RK54_RS23900 PF01725 Ham1 family RK54_RS23905 PF02594 Uncharacterised ACR, YggU family COG1872 RK54_RS23910 PF02325 YGGT family RK54_RS23915 PF01168 Alanine racemase, N-terminal domain RK54_RS23920 PF00437 Type II/IV secretion system protein RK54_RS23930 PF03652 Holliday junction resolvase RK54_RS23935 PF02622 Uncharacterized ACR, COG1678 RK54_RS23940 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RK54_RS23940 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RK54_RS23945 PF04452 RNA methyltransferase RK54_RS23950 PF04231 Endonuclease I RK54_RS23955 PF10263 SprT-like family RK54_RS23955 PF17283 SprT-like zinc ribbon domain RK54_RS23960 PF00083 Sugar (and other) transporter RK54_RS23965 PF02773 S-adenosylmethionine synthetase, C-terminal domain RK54_RS23965 PF02772 S-adenosylmethionine synthetase, central domain RK54_RS23965 PF00438 S-adenosylmethionine synthetase, N-terminal domain RK54_RS23985 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RK54_RS23985 PF17944 Arginine decarboxylase C-terminal helical extension RK54_RS23985 PF17810 Arginine decarboxylase helical bundle domain RK54_RS23995 PF07729 FCD domain RK54_RS23995 PF00392 Bacterial regulatory proteins, gntR family RK54_RS24005 PF01232 Mannitol dehydrogenase Rossmann domain RK54_RS24005 PF08125 Mannitol dehydrogenase C-terminal domain RK54_RS24010 PF08240 Alcohol dehydrogenase GroES-like domain RK54_RS24010 PF00107 Zinc-binding dehydrogenase RK54_RS24015 PF02615 Malate/L-lactate dehydrogenase RK54_RS24020 PF04074 YhcH/YjgK/YiaL RK54_RS24025 PF12697 Alpha/beta hydrolase family RK54_RS24030 PF00491 Arginase family RK54_RS24035 PF01435 Peptidase family M48 RK54_RS24040 PF02780 Transketolase, C-terminal domain RK54_RS24040 PF00456 Transketolase, thiamine diphosphate binding domain RK54_RS24040 PF02779 Transketolase, pyrimidine binding domain RK54_RS24045 PF00005 ABC transporter RK54_RS24050 PF00005 ABC transporter RK54_RS24075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RK54_RS24075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RK54_RS24080 PF00162 Phosphoglycerate kinase RK54_RS24085 PF01116 Fructose-bisphosphate aldolase class-II RK54_RS24090 PF05552 Conserved TM helix RK54_RS24090 PF00924 Mechanosensitive ion channel RK54_RS24095 PF01810 LysE type translocator RK54_RS24100 PF04402 Protein of unknown function (DUF541) RK54_RS24110 PF03466 LysR substrate binding domain RK54_RS24110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK54_RS24115 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RK54_RS24120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK54_RS24120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK54_RS24120 PF01842 ACT domain RK54_RS24125 PF01812 5-formyltetrahydrofolate cyclo-ligase family RK54_RS24135 PF05164 Cell division protein ZapA RK54_RS24145 PF03695 Uncharacterised protein family (UPF0149) RK54_RS24150 PF05195 Aminopeptidase P, N-terminal domain RK54_RS24150 PF00557 Metallopeptidase family M24 RK54_RS24155 PF01494 FAD binding domain RK54_RS24160 PF01494 FAD binding domain RK54_RS24165 PF01571 Aminomethyltransferase folate-binding domain RK54_RS24165 PF08669 Glycine cleavage T-protein C-terminal barrel domain RK54_RS24170 PF01597 Glycine cleavage H-protein RK54_RS24175 PF02347 Glycine cleavage system P-protein RK54_RS24190 PF00232 Glycosyl hydrolase family 1 RK54_RS24195 PF04266 ASCH domain RK54_RS24200 PF03006 Haemolysin-III related RK54_RS24210 PF01571 Aminomethyltransferase folate-binding domain RK54_RS24220 PF03937 Flavinator of succinate dehydrogenase RK54_RS24225 PF07254 Membrane-bound toxin component of toxin-antitoxin system RK54_RS24230 PF00258 Flavodoxin RK54_RS24235 PF02899 Phage integrase, N-terminal SAM-like domain RK54_RS24235 PF00589 Phage integrase family RK54_RS24240 PF10411 Disulfide bond isomerase protein N-terminus RK54_RS24240 PF13098 Thioredoxin-like domain RK54_RS24245 PF02272 DHHA1 domain RK54_RS24245 PF01368 DHH family RK54_RS24245 PF17768 RecJ OB domain