locus-tag class description DOE60_RS00010 PF04356 Protein of unknown function (DUF489) DOE60_RS00015 PF08328 Adenylosuccinate lyase C-terminal DOE60_RS00015 PF00206 Lyase DOE60_RS00020 PF00072 Response regulator receiver domain DOE60_RS00020 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS00025 PF08918 PhoQ Sensor DOE60_RS00030 PF08007 Cupin superfamily protein DOE60_RS00040 PF07687 Peptidase dimerisation domain DOE60_RS00040 PF01546 Peptidase family M20/M25/M40 DOE60_RS00045 PF00005 ABC transporter DOE60_RS00045 PF08402 TOBE domain DOE60_RS00050 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS00055 PF06767 Sif protein DOE60_RS00060 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS00065 PF13416 Bacterial extracellular solute-binding protein DOE60_RS00070 PF02146 Sir2 family DOE60_RS00075 PF00480 ROK family DOE60_RS00080 PF02687 FtsX-like permease family DOE60_RS00080 PF12704 MacB-like periplasmic core domain DOE60_RS00085 PF00005 ABC transporter DOE60_RS00090 PF12704 MacB-like periplasmic core domain DOE60_RS00090 PF02687 FtsX-like permease family DOE60_RS00095 PF00270 DEAD/DEAH box helicase DOE60_RS00095 PF00271 Helicase conserved C-terminal domain DOE60_RS00095 PF03461 TRCF domain DOE60_RS00095 PF17757 UvrB interaction domain DOE60_RS00095 PF02559 CarD-like/TRCF domain DOE60_RS00100 PF03734 L,D-transpeptidase catalytic domain DOE60_RS00100 PF01476 LysM domain DOE60_RS00100 PF17969 L,D-transpeptidase C-terminal domain DOE60_RS00105 PF07338 Protein of unknown function (DUF1471) DOE60_RS00110 PF00440 Bacterial regulatory proteins, tetR family DOE60_RS00115 PF05433 Glycine zipper 2TM domain DOE60_RS00120 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS00125 PF05728 Uncharacterised protein family (UPF0227) DOE60_RS00130 PF00933 Glycosyl hydrolase family 3 N terminal domain DOE60_RS00135 PF01636 Phosphotransferase enzyme family DOE60_RS00140 PF13036 Peptidoglycan-synthase activator LpoB DOE60_RS00145 PF07233 Protein of unknown function (DUF1425) DOE60_RS00150 PF01230 HIT domain DOE60_RS00155 PF00593 TonB dependent receptor DOE60_RS00155 PF07715 TonB-dependent Receptor Plug Domain DOE60_RS00160 PF00367 phosphotransferase system, EIIB DOE60_RS00160 PF02378 Phosphotransferase system, EIIC DOE60_RS00165 PF01026 TatD related DNase DOE60_RS00170 PF09115 DNA polymerase III, delta subunit, C terminal DOE60_RS00175 PF02223 Thymidylate kinase DOE60_RS00180 PF02618 YceG-like family DOE60_RS00195 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE60_RS00195 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS00200 PF00577 Outer membrane usher protein DOE60_RS00200 PF13954 PapC N-terminal domain DOE60_RS00200 PF13953 PapC C-terminal domain DOE60_RS00220 PF02801 Beta-ketoacyl synthase, C-terminal domain DOE60_RS00220 PF00109 Beta-ketoacyl synthase, N-terminal domain DOE60_RS00225 PF00550 Phosphopantetheine attachment site DOE60_RS00235 PF00698 Acyl transferase domain DOE60_RS00240 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DOE60_RS00240 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DOE60_RS00245 PF02504 Fatty acid synthesis protein DOE60_RS00250 PF01783 Ribosomal L32p protein family DOE60_RS00255 PF02620 Large ribosomal RNA subunit accumulation protein YceD DOE60_RS00260 PF02545 Maf-like protein DOE60_RS00265 PF01479 S4 domain DOE60_RS00265 PF00849 RNA pseudouridylate synthase DOE60_RS00275 PF12111 Polyribonucleotide phosphorylase C terminal DOE60_RS00275 PF10150 Ribonuclease E/G family DOE60_RS00275 PF00575 S1 RNA binding domain DOE60_RS00285 PF00669 Bacterial flagellin N-terminal helical region DOE60_RS00290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE60_RS00290 PF00460 Flagella basal body rod protein DOE60_RS00295 PF10135 Rod binding protein DOE60_RS00295 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DOE60_RS00300 PF02119 Flagellar P-ring protein DOE60_RS00305 PF02107 Flagellar L-ring protein DOE60_RS00310 PF00460 Flagella basal body rod protein DOE60_RS00310 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE60_RS00315 PF00460 Flagella basal body rod protein DOE60_RS00315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE60_RS00320 PF07559 Flagellar basal body protein FlaE DOE60_RS00320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE60_RS00320 PF00460 Flagella basal body rod protein DOE60_RS00325 PF03963 Flagellar hook capping protein - N-terminal region DOE60_RS00325 PF13861 FlgD Tudor-like domain DOE60_RS00325 PF13860 FlgD Ig-like domain DOE60_RS00330 PF00460 Flagella basal body rod protein DOE60_RS00330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE60_RS00335 PF00460 Flagella basal body rod protein DOE60_RS00340 PF13144 Chaperone for flagella basal body P-ring formation DOE60_RS00345 PF04316 Anti-sigma-28 factor, FlgM DOE60_RS00350 PF05130 FlgN protein DOE60_RS00355 PF03023 Lipid II flippase MurJ DOE60_RS00360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE60_RS00365 PF04337 Protein of unknown function, DUF480 DOE60_RS00370 PF13302 Acetyltransferase (GNAT) domain DOE60_RS00375 PF07690 Major Facilitator Superfamily DOE60_RS00380 PF04399 Glutaredoxin 2, C terminal domain DOE60_RS00380 PF13417 Glutathione S-transferase, N-terminal domain DOE60_RS00385 PF07273 Protein of unknown function (DUF1439) DOE60_RS00390 PF01979 Amidohydrolase family DOE60_RS00395 PF06183 DinI-like family DOE60_RS00400 PF13991 BssS protein family DOE60_RS00405 PF01266 FAD dependent oxidoreductase DOE60_RS00410 PF10968 Protein of unknown function (DUF2770) DOE60_RS00415 PF01292 Prokaryotic cytochrome b561 DOE60_RS00420 PF04264 YceI-like domain DOE60_RS00425 PF00581 Rhodanese-like domain DOE60_RS00425 PF12368 Rhodanase C-terminal DOE60_RS00425 PF17773 UPF0176 acylphosphatase like domain DOE60_RS00430 PF03279 Bacterial lipid A biosynthesis acyltransferase DOE60_RS00440 PF07690 Major Facilitator Superfamily DOE60_RS00445 PF13984 MsyB protein DOE60_RS00450 PF07119 Protein of unknown function (DUF1375) DOE60_RS00455 PF00535 Glycosyl transferase family 2 DOE60_RS00460 PF04349 Periplasmic glucan biosynthesis protein, MdoG DOE60_RS00465 PF01757 Acyltransferase family DOE60_RS00470 PF13091 PLD-like domain DOE60_RS00475 PF01661 Macro domain DOE60_RS00485 PF10610 Thin aggregative fimbriae synthesis protein DOE60_RS00490 PF07012 Curlin associated repeat DOE60_RS00495 PF07012 Curlin associated repeat DOE60_RS00505 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS00510 PF10627 Curli assembly protein CsgE DOE60_RS00515 PF10614 Type VIII secretion system (T8SS), CsgF protein DOE60_RS00520 PF03783 Curli production assembly/transport component CsgG DOE60_RS00525 PF06496 Protein of unknown function (DUF1097) DOE60_RS00530 PF02613 Nitrate reductase delta subunit DOE60_RS00535 PF02811 PHP domain DOE60_RS00540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE60_RS00580 PF00474 Sodium:solute symporter family DOE60_RS00590 PF01619 Proline dehydrogenase DOE60_RS00590 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DOE60_RS00590 PF00171 Aldehyde dehydrogenase family DOE60_RS00590 PF14850 DNA-binding domain of Proline dehydrogenase DOE60_RS00600 PF08362 YcdC-like protein, C-terminal region DOE60_RS00600 PF00440 Bacterial regulatory proteins, tetR family DOE60_RS00605 PF10685 Stress-induced bacterial acidophilic repeat motif DOE60_RS00610 PF03358 NADPH-dependent FMN reductase DOE60_RS00615 PF13993 YccJ-like protein DOE60_RS00620 PF00328 Histidine phosphatase superfamily (branch 2) DOE60_RS00625 PF00578 AhpC/TSA family DOE60_RS00630 PF13462 Thioredoxin DOE60_RS00630 PF06965 Na+/H+ antiporter 1 DOE60_RS00635 PF13098 Thioredoxin-like domain DOE60_RS00635 PF02683 Cytochrome C biogenesis protein transmembrane region DOE60_RS00635 PF11412 Disulphide bond corrector protein DsbC DOE60_RS00650 PF01556 DnaJ C terminal domain DOE60_RS00650 PF00226 DnaJ domain DOE60_RS00670 PF12706 Beta-lactamase superfamily domain DOE60_RS00680 PF07690 Major Facilitator Superfamily DOE60_RS00685 PF03328 HpcH/HpaI aldolase/citrate lyase family DOE60_RS00690 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOE60_RS00695 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase DOE60_RS00700 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DOE60_RS00705 PF00171 Aldehyde dehydrogenase family DOE60_RS00710 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOE60_RS00715 PF01047 MarR family DOE60_RS00720 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal DOE60_RS00720 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal DOE60_RS00725 PF01613 Flavin reductase like domain DOE60_RS00745 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS00745 PF00072 Response regulator receiver domain DOE60_RS00750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS00750 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS00755 PF03577 Peptidase family C69 DOE60_RS00765 PF13132 Domain of unknown function (DUF3950) DOE60_RS00805 PF13981 SopA-like central domain DOE60_RS00805 PF13979 SopA-like catalytic domain DOE60_RS00810 PF13981 SopA-like central domain DOE60_RS00810 PF13979 SopA-like catalytic domain DOE60_RS00835 PF01027 Inhibitor of apoptosis-promoting Bax1 DOE60_RS00840 PF04358 DsrC like protein DOE60_RS00845 PF00708 Acylphosphatase DOE60_RS00850 PF12833 Helix-turn-helix domain DOE60_RS00855 PF01161 Phosphatidylethanolamine-binding protein DOE60_RS00860 PF17785 PUA-like domain DOE60_RS00860 PF10672 S-adenosylmethionine-dependent methyltransferase DOE60_RS00865 PF08755 Hemimethylated DNA-binding protein YccV like DOE60_RS00870 PF13380 CoA binding domain DOE60_RS00875 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DOE60_RS00880 PF02142 MGS-like domain DOE60_RS00890 PF03733 Inner membrane component domain DOE60_RS00895 PF12805 FUSC-like inner membrane protein yccS DOE60_RS00900 PF04994 TfoX C-terminal domain DOE60_RS00900 PF04993 TfoX N-terminal domain DOE60_RS00905 PF03846 Cell division inhibitor SulA DOE60_RS00910 PF00691 OmpA family DOE60_RS00910 PF01389 OmpA-like transmembrane domain DOE60_RS00915 PF06303 MatP N-terminal domain DOE60_RS00915 PF17414 MatP C-terminal ribbon-helix-helix domain DOE60_RS00920 PF13654 AAA domain DOE60_RS00920 PF05362 Lon protease (S16) C-terminal proteolytic domain DOE60_RS00925 PF07977 FabA-like domain DOE60_RS00930 PF04957 Ribosome modulation factor DOE60_RS00935 PF03886 ABC-type transport auxiliary lipoprotein component DOE60_RS00940 PF02470 MlaD protein DOE60_RS00945 PF04403 Paraquat-inducible protein A DOE60_RS00950 PF16326 ABC transporter C-terminal domain DOE60_RS00950 PF00005 ABC transporter DOE60_RS00950 PF12848 ABC transporter DOE60_RS00955 PF01170 Putative RNA methylase family UPF0020 DOE60_RS00955 PF02926 THUMP domain DOE60_RS00955 PF10672 S-adenosylmethionine-dependent methyltransferase DOE60_RS00960 PF03476 MOSC N-terminal beta barrel domain DOE60_RS00960 PF03473 MOSC domain DOE60_RS00960 PF00111 2Fe-2S iron-sulfur cluster binding domain DOE60_RS00965 PF07126 Cell-division protein ZapC DOE60_RS00970 PF01180 Dihydroorotate dehydrogenase DOE60_RS00975 PF01433 Peptidase family M1 domain DOE60_RS00975 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DOE60_RS00975 PF11940 Domain of unknown function (DUF3458) Ig-like fold DOE60_RS00980 PF06183 DinI-like family DOE60_RS00985 PF03372 Endonuclease/Exonuclease/phosphatase family DOE60_RS01020 PF13979 SopA-like catalytic domain DOE60_RS01020 PF13981 SopA-like central domain DOE60_RS01070 PF00589 Phage integrase family DOE60_RS01070 PF12167 Arm DNA-binding domain DOE60_RS01075 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DOE60_RS01075 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DOE60_RS01080 PF01336 OB-fold nucleic acid binding domain DOE60_RS01080 PF00152 tRNA synthetases class II (D, K and N) DOE60_RS01085 PF00267 Gram-negative porin DOE60_RS01090 PF00155 Aminotransferase class I and II DOE60_RS01095 PF00753 Metallo-beta-lactamase superfamily DOE60_RS01100 PF05951 Bacterial protein of unknown function (DUF882) DOE60_RS01115 PF04310 MukB N-terminal DOE60_RS01115 PF16330 MukB hinge domain DOE60_RS01120 PF04288 MukE-like family DOE60_RS01125 PF03882 MukF winged-helix domain DOE60_RS01125 PF17193 MukF C-terminal domain DOE60_RS01125 PF17192 MukF middle domain DOE60_RS01130 PF13847 Methyltransferase domain DOE60_RS01135 PF02698 DUF218 domain DOE60_RS01140 PF01636 Phosphotransferase enzyme family DOE60_RS01145 PF02348 Cytidylyltransferase DOE60_RS01150 PF03966 Trm112p-like protein DOE60_RS01155 PF06224 Winged helix DNA-binding domain DOE60_RS01160 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DOE60_RS01165 PF00005 ABC transporter DOE60_RS01165 PF00664 ABC transporter transmembrane region DOE60_RS01170 PF03772 Competence protein DOE60_RS01170 PF00753 Metallo-beta-lactamase superfamily DOE60_RS01175 PF00216 Bacterial DNA-binding protein DOE60_RS01180 PF00575 S1 RNA binding domain DOE60_RS01185 PF02224 Cytidylate kinase DOE60_RS01195 PF01435 Peptidase family M48 DOE60_RS01200 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DOE60_RS01205 PF00266 Aminotransferase class-V DOE60_RS01210 PF04239 Protein of unknown function (DUF421) DOE60_RS01215 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding DOE60_RS01215 PF18381 YcaO cyclodehydratase C-terminal domain DOE60_RS01220 PF01226 Formate/nitrite transporter DOE60_RS01225 PF01228 Glycine radical DOE60_RS01225 PF02901 Pyruvate formate lyase-like DOE60_RS01230 PF11047 Salmonella outer protein D DOE60_RS01235 PF04055 Radical SAM superfamily DOE60_RS01240 PF02369 Bacterial Ig-like domain (group 1) DOE60_RS01240 PF07979 Intimin C-type lectin domain DOE60_RS01240 PF09134 Invasin, domain 3 DOE60_RS01240 PF11924 Inverse autotransporter, beta-domain DOE60_RS01245 PF13520 Amino acid permease DOE60_RS01250 PF07690 Major Facilitator Superfamily DOE60_RS01260 PF04976 DMSO reductase anchor subunit (DmsC) DOE60_RS01265 PF12800 4Fe-4S binding domain DOE60_RS01265 PF13247 4Fe-4S dicluster domain DOE60_RS01270 PF00384 Molybdopterin oxidoreductase DOE60_RS01270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS01270 PF01568 Molydopterin dinucleotide binding domain DOE60_RS01275 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOE60_RS01275 PF02403 Seryl-tRNA synthetase N-terminal domain DOE60_RS01285 PF12002 MgsA AAA+ ATPase C terminal DOE60_RS01285 PF16193 AAA C-terminal domain DOE60_RS01285 PF00004 ATPase family associated with various cellular activities (AAA) DOE60_RS01290 PF03548 Outer membrane lipoprotein carrier protein LolA DOE60_RS01295 PF17854 FtsK alpha domain DOE60_RS01295 PF01580 FtsK/SpoIIIE family DOE60_RS01295 PF09397 Ftsk gamma domain DOE60_RS01295 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DOE60_RS01300 PF01037 Lrp/AsnC ligand binding domain DOE60_RS01310 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS01315 PF00005 ABC transporter DOE60_RS01315 PF00664 ABC transporter transmembrane region DOE60_RS01320 PF00005 ABC transporter DOE60_RS01320 PF00664 ABC transporter transmembrane region DOE60_RS01325 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DOE60_RS01335 PF01176 Translation initiation factor 1A / IF-1 DOE60_RS01345 PF02678 Pirin DOE60_RS01345 PF05726 Pirin C-terminal cupin domain DOE60_RS01350 PF00857 Isochorismatase family DOE60_RS01360 PF00004 ATPase family associated with various cellular activities (AAA) DOE60_RS01360 PF17871 AAA lid domain DOE60_RS01360 PF07724 AAA domain (Cdc48 subfamily) DOE60_RS01360 PF02861 Clp amino terminal domain, pathogenicity island component DOE60_RS01360 PF10431 C-terminal, D2-small domain, of ClpB protein DOE60_RS01365 PF02617 ATP-dependent Clp protease adaptor protein ClpS DOE60_RS01370 PF00313 'Cold-shock' DNA-binding domain DOE60_RS01380 PF12704 MacB-like periplasmic core domain DOE60_RS01380 PF02687 FtsX-like permease family DOE60_RS01380 PF00005 ABC transporter DOE60_RS01385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE60_RS01390 PF04393 Protein of unknown function (DUF535) DOE60_RS01395 PF11398 Protein of unknown function (DUF2813) DOE60_RS01405 PF03956 Lysine exporter LysO DOE60_RS01410 PF03063 Prismane/CO dehydrogenase family DOE60_RS01415 PF00175 Oxidoreductase NAD-binding domain DOE60_RS01415 PF00970 Oxidoreductase FAD-binding domain DOE60_RS01415 PF00111 2Fe-2S iron-sulfur cluster binding domain DOE60_RS01420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE60_RS01420 PF00205 Thiamine pyrophosphate enzyme, central domain DOE60_RS01420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE60_RS01425 PF01212 Beta-eliminating lyase DOE60_RS01430 PF13460 NAD(P)H-binding DOE60_RS01430 PF11066 Protein of unknown function (DUF2867) DOE60_RS01435 PF01370 NAD dependent epimerase/dehydratase family DOE60_RS01440 PF01510 N-acetylmuramoyl-L-alanine amidase DOE60_RS01445 PF01906 Putative heavy-metal-binding DOE60_RS01450 PF12883 Protein of unknown function (DUF3828) DOE60_RS01455 PF00005 ABC transporter DOE60_RS01460 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE60_RS01465 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS01470 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS01475 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE60_RS01495 PF03611 PTS system sugar-specific permease component DOE60_RS01505 PF05958 tRNA (Uracil-5-)-methyltransferase DOE60_RS01510 PF10767 Protein of unknown function (DUF2593) DOE60_RS01515 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS01520 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS01525 PF00005 ABC transporter DOE60_RS01525 PF08402 TOBE domain DOE60_RS01530 PF13416 Bacterial extracellular solute-binding protein DOE60_RS01535 PF10722 Putative bacterial sensory transduction regulator DOE60_RS01540 PF08443 RimK-like ATP-grasp domain DOE60_RS01540 PF18030 RimK PreATP-grasp domain DOE60_RS01545 PF00881 Nitroreductase family DOE60_RS01550 PF07214 Protein of unknown function (DUF1418) DOE60_RS01555 PF00462 Glutaredoxin DOE60_RS01560 PF11045 Putative inner membrane protein of Enterobacteriaceae DOE60_RS01570 PF06826 Predicted Permease Membrane Region DOE60_RS01570 PF02080 TrkA-C domain DOE60_RS01575 PF00440 Bacterial regulatory proteins, tetR family DOE60_RS01580 PF07690 Major Facilitator Superfamily DOE60_RS01590 PF07690 Major Facilitator Superfamily DOE60_RS01595 PF01569 PAP2 superfamily DOE60_RS01600 PF08220 DeoR-like helix-turn-helix domain DOE60_RS01600 PF00455 DeoR C terminal sensor domain DOE60_RS01605 PF07943 Penicillin-binding protein 5, C-terminal domain DOE60_RS01605 PF00768 D-alanyl-D-alanine carboxypeptidase DOE60_RS01610 PF13417 Glutathione S-transferase, N-terminal domain DOE60_RS01610 PF00043 Glutathione S-transferase, C-terminal domain DOE60_RS01615 PF07995 Glucose / Sorbosone dehydrogenase DOE60_RS01620 PF10799 Biofilm formation protein (YliH/bssR) DOE60_RS01625 PF18693 TRAM domain DOE60_RS01625 PF04055 Radical SAM superfamily DOE60_RS01625 PF00919 Uncharacterized protein family UPF0004 DOE60_RS01630 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS01630 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE60_RS01635 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS01640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE60_RS01645 PF00005 ABC transporter DOE60_RS01645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE60_RS01650 PF03453 MoeA N-terminal region (domain I and II) DOE60_RS01650 PF03454 MoeA C-terminal region (domain IV) DOE60_RS01650 PF00994 Probable molybdopterin binding domain DOE60_RS01655 PF00899 ThiF family DOE60_RS01660 PF04055 Radical SAM superfamily DOE60_RS01665 PF02901 Pyruvate formate lyase-like DOE60_RS01665 PF01228 Glycine radical DOE60_RS01690 PF07350 Protein of unknown function (DUF1479) DOE60_RS01695 PF12848 ABC transporter DOE60_RS01695 PF00005 ABC transporter DOE60_RS01700 PF17969 L,D-transpeptidase C-terminal domain DOE60_RS01700 PF03734 L,D-transpeptidase catalytic domain DOE60_RS01705 PF03600 Citrate transporter DOE60_RS01710 PF02742 Iron dependent repressor, metal binding and dimerisation domain DOE60_RS01710 PF01325 Iron dependent repressor, N-terminal DNA binding domain DOE60_RS01720 PF00884 Sulfatase DOE60_RS01725 PF13505 Outer membrane protein beta-barrel domain DOE60_RS01730 PF00892 EamA-like transporter family DOE60_RS01735 PF00210 Ferritin-like domain DOE60_RS01745 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE60_RS01750 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS01755 PF00005 ABC transporter DOE60_RS01760 PF00924 Mechanosensitive ion channel DOE60_RS01765 PF05971 RNA methyltransferase DOE60_RS01770 PF01258 Prokaryotic dksA/traR C4-type zinc finger DOE60_RS01775 PF07338 Protein of unknown function (DUF1471) DOE60_RS01780 PF02885 Glycosyl transferase family, helical bundle domain DOE60_RS01785 PF06733 DEAD_2 DOE60_RS01785 PF13307 Helicase C-terminal domain DOE60_RS01790 PF00270 DEAD/DEAH box helicase DOE60_RS01790 PF00271 Helicase conserved C-terminal domain DOE60_RS01795 PF09209 Tetracyclin repressor-like, C-terminal domain DOE60_RS01795 PF00440 Bacterial regulatory proteins, tetR family DOE60_RS01800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE60_RS01820 PF11076 Putative inner membrane protein YbhQ DOE60_RS01825 PF03372 Endonuclease/Exonuclease/phosphatase family DOE60_RS01830 PF13091 PLD-like domain DOE60_RS01835 PF03706 Lysylphosphatidylglycerol synthase TM region DOE60_RS01860 PF01027 Inhibitor of apoptosis-promoting Bax1 DOE60_RS01865 PF02391 MoaE protein DOE60_RS01870 PF02597 ThiS family DOE60_RS01875 PF01967 MoaC family DOE60_RS01880 PF00994 Probable molybdopterin binding domain DOE60_RS01885 PF04055 Radical SAM superfamily DOE60_RS01885 PF06463 Molybdenum Cofactor Synthesis C DOE60_RS01890 PF01933 Uncharacterised protein family UPF0052 DOE60_RS01895 PF12344 Ultra-violet resistance protein B DOE60_RS01895 PF17757 UvrB interaction domain DOE60_RS01895 PF02151 UvrB/uvrC motif DOE60_RS01895 PF04851 Type III restriction enzyme, res subunit DOE60_RS01895 PF00271 Helicase conserved C-terminal domain DOE60_RS01910 PF08241 Methyltransferase domain DOE60_RS01915 PF00155 Aminotransferase class I and II DOE60_RS01920 PF06968 Biotin and Thiamin Synthesis associated domain DOE60_RS01920 PF04055 Radical SAM superfamily DOE60_RS01925 PF00202 Aminotransferase class-III DOE60_RS01930 PF01161 Phosphatidylethanolamine-binding protein DOE60_RS01935 PF00221 Aromatic amino acid lyase DOE60_RS01940 PF17391 Urocanase N-terminal domain DOE60_RS01940 PF17392 Urocanase C-terminal domain DOE60_RS01940 PF01175 Urocanase Rossmann-like domain DOE60_RS01945 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS01945 PF07702 UTRA domain DOE60_RS01950 PF00491 Arginase family DOE60_RS01955 PF01979 Amidohydrolase family DOE60_RS01960 PF01095 Pectinesterase DOE60_RS01965 PF00694 Aconitase C-terminal domain DOE60_RS01965 PF00330 Aconitase family (aconitate hydratase) DOE60_RS01970 PF00939 Sodium:sulfate symporter transmembrane region DOE60_RS01975 PF04303 PrpF protein DOE60_RS01980 PF03466 LysR substrate binding domain DOE60_RS01980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS01985 PF10282 Lactonase, 7-bladed beta-propeller DOE60_RS01995 PF00005 ABC transporter DOE60_RS01995 PF03459 TOBE domain DOE60_RS02000 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS02010 PF10766 Multidrug efflux pump-associated protein AcrZ DOE60_RS02015 PF03459 TOBE domain DOE60_RS02015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS02020 PF00005 ABC transporter DOE60_RS02030 PF16363 GDP-mannose 4,6 dehydratase DOE60_RS02035 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DOE60_RS02035 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DOE60_RS02040 PF08544 GHMP kinases C terminal DOE60_RS02040 PF10509 Galactokinase galactose-binding signature DOE60_RS02040 PF00288 GHMP kinases N terminal domain DOE60_RS02045 PF01263 Aldose 1-epimerase DOE60_RS02055 PF00300 Histidine phosphatase superfamily (branch 1) DOE60_RS02060 PF00005 ABC transporter DOE60_RS02065 PF01032 FecCD transport family DOE60_RS02070 PF00793 DAHP synthetase I family DOE60_RS02075 PF13985 YbgS-like protein DOE60_RS02080 PF01545 Cation efflux family DOE60_RS02085 PF04973 Nicotinamide mononucleotide transporter DOE60_RS02090 PF02445 Quinolinate synthetase A protein DOE60_RS02125 PF13174 Tetratricopeptide repeat DOE60_RS02125 PF16331 TolA binding protein trimerisation DOE60_RS02130 PF00691 OmpA family DOE60_RS02135 PF04052 TolB amino-terminal domain DOE60_RS02135 PF07676 WD40-like Beta Propeller Repeat DOE60_RS02140 PF06519 TolA C-terminal DOE60_RS02145 PF02472 Biopolymer transport protein ExbD/TolR DOE60_RS02150 PF01618 MotA/TolQ/ExbB proton channel family DOE60_RS02155 PF03061 Thioesterase superfamily DOE60_RS02160 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) DOE60_RS02170 PF08173 Membrane bound YbgT-like protein DOE60_RS02175 PF02322 Cytochrome bd terminal oxidase subunit II DOE60_RS02180 PF01654 Cytochrome bd terminal oxidase subunit I DOE60_RS02190 PF00549 CoA-ligase DOE60_RS02190 PF02629 CoA binding domain DOE60_RS02195 PF08442 ATP-grasp domain DOE60_RS02195 PF00549 CoA-ligase DOE60_RS02200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DOE60_RS02200 PF00364 Biotin-requiring enzyme DOE60_RS02200 PF02817 e3 binding domain DOE60_RS02205 PF16078 2-oxoglutarate dehydrogenase N-terminus DOE60_RS02205 PF00676 Dehydrogenase E1 component DOE60_RS02205 PF16870 2-oxoglutarate dehydrogenase C-terminal DOE60_RS02205 PF02779 Transketolase, pyrimidine binding domain DOE60_RS02210 PF13085 2Fe-2S iron-sulfur cluster binding domain DOE60_RS02215 PF02910 Fumarate reductase flavoprotein C-term DOE60_RS02215 PF00890 FAD binding domain DOE60_RS02220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DOE60_RS02225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DOE60_RS02240 PF00285 Citrate synthase, C-terminal domain DOE60_RS02245 PF05145 Transition state regulatory protein AbrB DOE60_RS02250 PF06827 Zinc finger found in FPG and IleRS DOE60_RS02250 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DOE60_RS02250 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DOE60_RS02260 PF13439 Glycosyltransferase Family 4 DOE60_RS02260 PF00534 Glycosyl transferases group 1 DOE60_RS02265 PF13439 Glycosyltransferase Family 4 DOE60_RS02265 PF00534 Glycosyl transferases group 1 DOE60_RS02275 PF00005 ABC transporter DOE60_RS02290 PF00483 Nucleotidyl transferase DOE60_RS02290 PF01050 Mannose-6-phosphate isomerase DOE60_RS02310 PF00589 Phage integrase family DOE60_RS02320 PF03746 LamB/YcsF family DOE60_RS02325 PF02626 Carboxyltransferase domain, subdomain A and B DOE60_RS02330 PF02682 Carboxyltransferase domain, subdomain C and D DOE60_RS02335 PF01784 NIF3 (NGG1p interacting factor 3) DOE60_RS02345 PF00854 POT family DOE60_RS02365 PF05638 Type VI secretion system effector, Hcp DOE60_RS02370 PF10725 Protein of unknown function (DUF2517) DOE60_RS02375 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) DOE60_RS02380 PF03814 Potassium-transporting ATPase A subunit DOE60_RS02390 PF02669 K+-transporting ATPase, c chain DOE60_RS02395 PF13492 GAF domain DOE60_RS02395 PF02702 Osmosensitive K+ channel His kinase sensor domain DOE60_RS02395 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS02395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS02395 PF13493 Domain of unknown function (DUF4118) DOE60_RS02400 PF00072 Response regulator receiver domain DOE60_RS02400 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS02405 PF10940 Protein of unknown function (DUF2618) DOE60_RS02410 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DOE60_RS02410 PF01276 Orn/Lys/Arg decarboxylase, major domain DOE60_RS02410 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DOE60_RS02415 PF13520 Amino acid permease DOE60_RS02425 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOE60_RS02425 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOE60_RS02425 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOE60_RS02425 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOE60_RS02430 PF17206 SeqA protein N-terminal domain DOE60_RS02430 PF03925 SeqA protein C-terminal domain DOE60_RS02435 PF12697 Alpha/beta hydrolase family DOE60_RS02440 PF01402 Ribbon-helix-helix protein, copG family DOE60_RS02445 PF00258 Flavodoxin DOE60_RS02450 PF01475 Ferric uptake regulator family DOE60_RS02455 PF03466 LysR substrate binding domain DOE60_RS02455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS02460 PF14537 Cytochrome c3 DOE60_RS02460 PF00890 FAD binding domain DOE60_RS02470 PF07690 Major Facilitator Superfamily DOE60_RS02475 PF13982 YbfN-like lipoprotein DOE60_RS02480 PF03573 outer membrane porin, OprD family DOE60_RS02495 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DOE60_RS02495 PF00749 tRNA synthetases class I (E and Q), catalytic domain DOE60_RS02510 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DOE60_RS02515 PF01979 Amidohydrolase family DOE60_RS02520 PF00480 ROK family DOE60_RS02520 PF01047 MarR family DOE60_RS02525 PF13344 Haloacid dehalogenase-like hydrolase DOE60_RS02530 PF00733 Asparagine synthase DOE60_RS02530 PF13537 Glutamine amidotransferase domain DOE60_RS02575 PF01494 FAD binding domain DOE60_RS02580 PF04055 Radical SAM superfamily DOE60_RS02580 PF01938 TRAM domain DOE60_RS02580 PF00919 Uncharacterized protein family UPF0004 DOE60_RS02585 PF02562 PhoH-like protein DOE60_RS02590 PF02130 Uncharacterized protein family UPF0054 DOE60_RS02595 PF00571 CBS domain DOE60_RS02595 PF03471 Transporter associated domain DOE60_RS02600 PF00795 Carbon-nitrogen hydrolase DOE60_RS02605 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE60_RS02610 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS02615 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS02620 PF00005 ABC transporter DOE60_RS02625 PF01156 Inosine-uridine preferring nucleoside hydrolase DOE60_RS02630 PF07295 Zinc-ribbon containing domain DOE60_RS02640 PF00133 tRNA synthetases class I (I, L, M and V) DOE60_RS02640 PF13603 Leucyl-tRNA synthetase, Domain 2 DOE60_RS02640 PF08264 Anticodon-binding domain of tRNA DOE60_RS02645 PF04390 Lipopolysaccharide-assembly DOE60_RS02650 PF06144 DNA polymerase III, delta subunit DOE60_RS02650 PF14840 Processivity clamp loader gamma complex DNA pol III C-term DOE60_RS02655 PF01467 Cytidylyltransferase-like DOE60_RS02660 PF00155 Aminotransferase class I and II DOE60_RS02665 PF00300 Histidine phosphatase superfamily (branch 1) DOE60_RS02675 PF02590 Predicted SPOUT methyltransferase DOE60_RS02680 PF03717 Penicillin-binding Protein dimerisation domain DOE60_RS02680 PF00905 Penicillin binding protein transpeptidase domain DOE60_RS02685 PF01098 Cell cycle protein DOE60_RS02690 PF03330 Lytic transglycolase DOE60_RS02690 PF05036 Sporulation related domain DOE60_RS02695 PF07943 Penicillin-binding protein 5, C-terminal domain DOE60_RS02695 PF00768 D-alanyl-D-alanine carboxypeptidase DOE60_RS02700 PF04359 Protein of unknown function (DUF493) DOE60_RS02705 PF03099 Biotin/lipoate A/B protein ligase family DOE60_RS02710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS02710 PF03466 LysR substrate binding domain DOE60_RS02715 PF04055 Radical SAM superfamily DOE60_RS02715 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DOE60_RS02720 PF02416 mttA/Hcf106 family DOE60_RS02725 PF00795 Carbon-nitrogen hydrolase DOE60_RS02730 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DOE60_RS02735 PF00313 'Cold-shock' DNA-binding domain DOE60_RS02740 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP DOE60_RS02745 PF03606 C4-dicarboxylate anaerobic carrier DOE60_RS02750 PF12431 Transcriptional regulator DOE60_RS02750 PF00072 Response regulator receiver domain DOE60_RS02765 PF08218 Citrate lyase ligase C-terminal domain DOE60_RS02770 PF06857 Malonate decarboxylase delta subunit (MdcD) DOE60_RS02775 PF03328 HpcH/HpaI aldolase/citrate lyase family DOE60_RS02780 PF04223 Citrate lyase, alpha subunit (CitF) DOE60_RS02785 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase DOE60_RS02790 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DOE60_RS02795 PF00939 Sodium:sulfate symporter transmembrane region DOE60_RS02800 PF00445 Ribonuclease T2 family DOE60_RS02810 PF14760 Rnk N-terminus DOE60_RS02810 PF01272 Transcription elongation factor, GreA/GreB, C-term DOE60_RS02815 PF13823 Alcohol dehydrogenase GroES-associated DOE60_RS02815 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS02815 PF00107 Zinc-binding dehydrogenase DOE60_RS02820 PF00582 Universal stress protein family DOE60_RS02830 PF13247 4Fe-4S dicluster domain DOE60_RS02835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS02835 PF01568 Molydopterin dinucleotide binding domain DOE60_RS02835 PF00384 Molybdopterin oxidoreductase DOE60_RS02845 PF13192 Thioredoxin domain DOE60_RS02845 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS02850 PF00578 AhpC/TSA family DOE60_RS02850 PF10417 C-terminal domain of 1-Cys peroxiredoxin DOE60_RS02855 PF13098 Thioredoxin-like domain DOE60_RS02865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS02865 PF03466 LysR substrate binding domain DOE60_RS02870 PF11922 Domain of unknown function (DUF3440) DOE60_RS02870 PF01507 Phosphoadenosine phosphosulfate reductase family DOE60_RS02875 PF02195 ParB-like nuclease domain DOE60_RS02880 PF00155 Aminotransferase class I and II DOE60_RS02885 PF00465 Iron-containing alcohol dehydrogenase DOE60_RS02890 PF04328 Selenoprotein, putative DOE60_RS02895 PF02554 Carbon starvation protein CstA DOE60_RS02895 PF13722 5TM C-terminal transporter carbon starvation CstA DOE60_RS02900 PF03061 Thioesterase superfamily DOE60_RS02910 PF00550 Phosphopantetheine attachment site DOE60_RS02910 PF00857 Isochorismatase family DOE60_RS02915 PF00501 AMP-binding enzyme DOE60_RS02915 PF13193 AMP-binding enzyme C-terminal domain DOE60_RS02920 PF00425 chorismate binding enzyme DOE60_RS02925 PF01497 Periplasmic binding protein DOE60_RS02930 PF05977 Transmembrane secretion effector DOE60_RS02935 PF01032 FecCD transport family DOE60_RS02940 PF01032 FecCD transport family DOE60_RS02945 PF00005 ABC transporter DOE60_RS02950 PF02706 Chain length determinant protein DOE60_RS02955 PF00668 Condensation domain DOE60_RS02955 PF13193 AMP-binding enzyme C-terminal domain DOE60_RS02955 PF00501 AMP-binding enzyme DOE60_RS02955 PF00550 Phosphopantetheine attachment site DOE60_RS02955 PF00975 Thioesterase domain DOE60_RS02960 PF03621 MbtH-like protein DOE60_RS02965 PF00756 Putative esterase DOE60_RS02965 PF11806 Domain of unknown function (DUF3327) DOE60_RS02970 PF07715 TonB-dependent Receptor Plug Domain DOE60_RS02970 PF00593 TonB dependent receptor DOE60_RS02975 PF01648 4'-phosphopantetheinyl transferase superfamily DOE60_RS02975 PF17837 4'-phosphopantetheinyl transferase N-terminal domain DOE60_RS02980 PF04107 Glutamate-cysteine ligase family 2(GCS2) DOE60_RS02985 PF06643 Protein of unknown function (DUF1158) DOE60_RS02990 PF12833 Helix-turn-helix domain DOE60_RS02995 PF00440 Bacterial regulatory proteins, tetR family DOE60_RS02995 PF16295 Tetracyclin repressor-like, C-terminal domain DOE60_RS03000 PF04237 YjbR DOE60_RS03005 PF00881 Nitroreductase family DOE60_RS03015 PF03830 PTS system sorbose subfamily IIB component DOE60_RS03025 PF03613 PTS system mannose/fructose/sorbose family IID component DOE60_RS03035 PF01380 SIS domain DOE60_RS03040 PF00158 Sigma-54 interaction domain DOE60_RS03040 PF00874 PRD domain DOE60_RS03040 PF03610 PTS system fructose IIA component DOE60_RS03045 PF03797 Autotransporter beta-domain DOE60_RS03045 PF00657 GDSL-like Lipase/Acylhydrolase DOE60_RS03055 PF00924 Mechanosensitive ion channel DOE60_RS03060 PF00324 Amino acid permease DOE60_RS03070 PF04224 Protein of unknown function, DUF417 DOE60_RS03075 PF07338 Protein of unknown function (DUF1471) DOE60_RS03080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE60_RS03080 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS03085 PF12833 Helix-turn-helix domain DOE60_RS03085 PF12852 Cupin DOE60_RS03090 PF00873 AcrB/AcrD/AcrF family DOE60_RS03095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE60_RS03095 PF00529 HlyD membrane-fusion protein of T1SS DOE60_RS03100 PF11604 Copper binding periplasmic protein CusF DOE60_RS03105 PF02321 Outer membrane efflux protein DOE60_RS03110 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS03110 PF00072 Response regulator receiver domain DOE60_RS03115 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS03115 PF00672 HAMP domain DOE60_RS03115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS03135 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS03150 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS03150 PF00072 Response regulator receiver domain DOE60_RS03155 PF00419 Fimbrial protein DOE60_RS03160 PF00419 Fimbrial protein DOE60_RS03165 PF13953 PapC C-terminal domain DOE60_RS03165 PF00577 Outer membrane usher protein DOE60_RS03165 PF13954 PapC N-terminal domain DOE60_RS03170 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE60_RS03170 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS03180 PF00419 Fimbrial protein DOE60_RS03190 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DOE60_RS03190 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DOE60_RS03200 PF04307 LexA-binding, inner membrane-associated putative hydrolase DOE60_RS03205 PF01406 tRNA synthetases class I (C) catalytic domain DOE60_RS03205 PF09190 DALR domain DOE60_RS03210 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DOE60_RS03215 PF12850 Calcineurin-like phosphoesterase superfamily domain DOE60_RS03230 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DOE60_RS03230 PF02222 ATP-grasp domain DOE60_RS03240 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS03245 PF00005 ABC transporter DOE60_RS03245 PF09383 NIL domain DOE60_RS03250 PF03180 NLPA lipoprotein DOE60_RS03265 PF00005 ABC transporter DOE60_RS03270 PF13472 GDSL-like Lipase/Acylhydrolase family DOE60_RS03275 PF00106 short chain dehydrogenase DOE60_RS03280 PF00085 Thioredoxin DOE60_RS03285 PF03649 Uncharacterised protein family (UPF0014) DOE60_RS03290 PF00005 ABC transporter DOE60_RS03295 PF01145 SPFH domain / Band 7 family DOE60_RS03295 PF16200 C-terminal region of band_7 DOE60_RS03300 PF01957 NfeD-like C-terminal, partner-binding DOE60_RS03305 PF13411 MerR HTH family regulatory protein DOE60_RS03310 PF00403 Heavy-metal-associated domain DOE60_RS03320 PF04073 Aminoacyl-tRNA editing domain DOE60_RS03325 PF02872 5'-nucleotidase, C-terminal domain DOE60_RS03325 PF00149 Calcineurin-like phosphoesterase DOE60_RS03330 PF07690 Major Facilitator Superfamily DOE60_RS03335 PF02254 TrkA-N domain DOE60_RS03335 PF00999 Sodium/hydrogen exchanger family DOE60_RS03340 PF00294 pfkB family carbohydrate kinase DOE60_RS03345 PF07859 alpha/beta hydrolase fold DOE60_RS03350 PF00762 Ferrochelatase DOE60_RS03355 PF05191 Adenylate kinase, active site lid DOE60_RS03370 PF00183 Hsp90 protein DOE60_RS03370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS03375 PF13662 Toprim domain DOE60_RS03375 PF02132 RecR protein DOE60_RS03380 PF02575 YbaB/EbfC DNA-binding family DOE60_RS03385 PF12169 DNA polymerase III subunits gamma and tau domain III DOE60_RS03385 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DOE60_RS03385 PF12170 DNA polymerase III tau subunit V interacting with alpha DOE60_RS03390 PF00156 Phosphoribosyl transferase domain DOE60_RS03400 PF04304 Protein of unknown function (DUF454) DOE60_RS03405 PF07445 Primosomal replication protein priC DOE60_RS03410 PF10689 Protein of unknown function (DUF2496) DOE60_RS03425 PF12794 Mechanosensitive ion channel inner membrane domain 1 DOE60_RS03425 PF12795 Mechanosensitive ion channel porin domain DOE60_RS03425 PF00924 Mechanosensitive ion channel DOE60_RS03430 PF08361 MAATS-type transcriptional repressor, C-terminal region DOE60_RS03430 PF00440 Bacterial regulatory proteins, tetR family DOE60_RS03435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE60_RS03435 PF00529 HlyD membrane-fusion protein of T1SS DOE60_RS03440 PF00873 AcrB/AcrD/AcrF family DOE60_RS03445 PF10757 Biofilm formation regulator YbaJ DOE60_RS03450 PF05321 Haemolysin expression modulating protein DOE60_RS03455 PF12464 Maltose acetyltransferase DOE60_RS03455 PF14602 Hexapeptide repeat of succinyl-transferase DOE60_RS03460 PF10777 Inner membrane protein YlaC DOE60_RS03465 PF00444 Ribosomal protein L36 DOE60_RS03470 PF01197 Ribosomal protein L31 DOE60_RS03475 PF00563 EAL domain DOE60_RS03475 PF12792 CSS motif domain associated with EAL DOE60_RS03490 PF09619 Type III secretion system lipoprotein chaperone (YscW) DOE60_RS03500 PF00909 Ammonium Transporter Family DOE60_RS03505 PF00543 Nitrogen regulatory protein P-II DOE60_RS03510 PF00664 ABC transporter transmembrane region DOE60_RS03510 PF00005 ABC transporter DOE60_RS03515 PF00664 ABC transporter transmembrane region DOE60_RS03515 PF00005 ABC transporter DOE60_RS03520 PF01037 Lrp/AsnC ligand binding domain DOE60_RS03520 PF13404 AsnC-type helix-turn-helix domain DOE60_RS03535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE60_RS03535 PF12793 Sugar transport-related sRNA regulator N-term DOE60_RS03540 PF06508 Queuosine biosynthesis protein QueC DOE60_RS03555 PF13145 PPIC-type PPIASE domain DOE60_RS03560 PF00216 Bacterial DNA-binding protein DOE60_RS03565 PF00004 ATPase family associated with various cellular activities (AAA) DOE60_RS03565 PF02190 ATP-dependent protease La (LON) substrate-binding domain DOE60_RS03565 PF05362 Lon protease (S16) C-terminal proteolytic domain DOE60_RS03570 PF06689 ClpX C4-type zinc finger DOE60_RS03570 PF07724 AAA domain (Cdc48 subfamily) DOE60_RS03570 PF10431 C-terminal, D2-small domain, of ClpB protein DOE60_RS03575 PF00574 Clp protease DOE60_RS03580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOE60_RS03580 PF05697 Bacterial trigger factor protein (TF) DOE60_RS03580 PF05698 Bacterial trigger factor protein (TF) C-terminus DOE60_RS03595 PF01722 BolA-like protein DOE60_RS03600 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DOE60_RS03600 PF03923 Uncharacterized lipoprotein DOE60_RS03605 PF07690 Major Facilitator Superfamily DOE60_RS03610 PF06481 COX Aromatic Rich Motif DOE60_RS03610 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DOE60_RS03615 PF00115 Cytochrome C and Quinol oxidase polypeptide I DOE60_RS03620 PF00510 Cytochrome c oxidase subunit III DOE60_RS03625 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DOE60_RS03630 PF01040 UbiA prenyltransferase family DOE60_RS03640 PF07690 Major Facilitator Superfamily DOE60_RS03645 PF04461 Protein of unknown function (DUF520) DOE60_RS03650 PF02558 Ketopantoate reductase PanE/ApbA DOE60_RS03650 PF08546 Ketopantoate reductase PanE/ApbA C terminal DOE60_RS03655 PF01965 DJ-1/PfpI family DOE60_RS03665 PF13247 4Fe-4S dicluster domain DOE60_RS03665 PF12800 4Fe-4S binding domain DOE60_RS03670 PF00384 Molybdopterin oxidoreductase DOE60_RS03670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS03670 PF01568 Molydopterin dinucleotide binding domain DOE60_RS03680 PF02926 THUMP domain DOE60_RS03680 PF02568 Thiamine biosynthesis protein (ThiI) DOE60_RS03685 PF02609 Exonuclease VII small subunit DOE60_RS03690 PF00348 Polyprenyl synthetase DOE60_RS03695 PF02780 Transketolase, C-terminal domain DOE60_RS03695 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DOE60_RS03695 PF02779 Transketolase, pyrimidine binding domain DOE60_RS03700 PF00248 Aldo/keto reductase family DOE60_RS03705 PF04608 Phosphatidylglycerophosphatase A DOE60_RS03710 PF00586 AIR synthase related protein, N-terminal domain DOE60_RS03710 PF02769 AIR synthase related protein, C-terminal domain DOE60_RS03715 PF01029 NusB family DOE60_RS03720 PF00885 6,7-dimethyl-8-ribityllumazine synthase DOE60_RS03725 PF01872 RibD C-terminal domain DOE60_RS03725 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DOE60_RS03730 PF03477 ATP cone domain DOE60_RS03735 PF11622 Protein of unknown function (DUF3251) DOE60_RS03740 PF03502 Nucleoside-specific channel-forming protein, Tsx DOE60_RS03745 PF01844 HNH endonuclease DOE60_RS03750 PF02355 Protein export membrane protein DOE60_RS03750 PF07549 SecD/SecF GG Motif DOE60_RS03755 PF07549 SecD/SecF GG Motif DOE60_RS03755 PF02355 Protein export membrane protein DOE60_RS03755 PF13721 SecD export protein N-terminal TM region DOE60_RS03760 PF02699 Preprotein translocase subunit DOE60_RS03765 PF01702 Queuine tRNA-ribosyltransferase DOE60_RS03775 PF02547 Queuosine biosynthesis protein DOE60_RS03780 PF04336 Acyl carrier protein phosphodiesterase DOE60_RS03785 PF10417 C-terminal domain of 1-Cys peroxiredoxin DOE60_RS03785 PF00578 AhpC/TSA family DOE60_RS03790 PF00128 Alpha amylase, catalytic domain DOE60_RS03790 PF02903 Alpha amylase, N-terminal ig-like domain DOE60_RS03795 PF00324 Amino acid permease DOE60_RS03800 PF05525 Branched-chain amino acid transport protein DOE60_RS03805 PF11808 Phosphate regulon sensor protein PhoR DOE60_RS03805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS03805 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS03805 PF00989 PAS fold DOE60_RS03810 PF00072 Response regulator receiver domain DOE60_RS03810 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS03815 PF12320 Type 5 capsule protein repressor C-terminal domain DOE60_RS03815 PF00149 Calcineurin-like phosphoesterase DOE60_RS03820 PF13476 AAA domain DOE60_RS03825 PF00419 Fimbrial protein DOE60_RS03830 PF13953 PapC C-terminal domain DOE60_RS03830 PF00577 Outer membrane usher protein DOE60_RS03830 PF13954 PapC N-terminal domain DOE60_RS03835 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS03835 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE60_RS03845 PF07690 Major Facilitator Superfamily DOE60_RS03850 PF00480 ROK family DOE60_RS03855 PF04381 Putative exonuclease, RdgC DOE60_RS03860 PF06865 Pyrimidine/purine nucleoside phosphorylase DOE60_RS03865 PF07302 AroM protein DOE60_RS03870 PF16362 YaiA protein DOE60_RS03875 PF01202 Shikimate kinase DOE60_RS03880 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DOE60_RS03885 PF14748 Pyrroline-5-carboxylate reductase dimerisation DOE60_RS03885 PF03807 NADP oxidoreductase coenzyme F420-dependent DOE60_RS03890 PF05230 MASE2 domain DOE60_RS03890 PF00990 Diguanylate cyclase, GGDEF domain DOE60_RS03895 PF07769 psiF repeat DOE60_RS03905 PF10796 Sigma-S stabilisation anti-adaptor protein DOE60_RS03910 PF07690 Major Facilitator Superfamily DOE60_RS03920 PF01820 D-ala D-ala ligase N-terminus DOE60_RS03920 PF07478 D-ala D-ala ligase C-terminus DOE60_RS03925 PF10953 Protein of unknown function (DUF2754) DOE60_RS03930 PF10954 Protein of unknown function (DUF2755) DOE60_RS03935 PF07759 Protein of unknown function (DUF1615) DOE60_RS03940 PF05992 SbmA/BacA-like family DOE60_RS03950 PF00144 Beta-lactamase DOE60_RS03955 PF15977 Winged helix-turn-helix DNA binding DOE60_RS03960 PF03797 Autotransporter beta-domain DOE60_RS03965 PF00490 Delta-aminolevulinic acid dehydratase DOE60_RS03970 PF00501 AMP-binding enzyme DOE60_RS03970 PF13193 AMP-binding enzyme C-terminal domain DOE60_RS03970 PF16177 Acetyl-coenzyme A synthetase N-terminus DOE60_RS03975 PF03972 MmgE/PrpD family DOE60_RS03980 PF00285 Citrate synthase, C-terminal domain DOE60_RS03990 PF00158 Sigma-54 interaction domain DOE60_RS03990 PF06506 Propionate catabolism activator DOE60_RS03990 PF02954 Bacterial regulatory protein, Fis family DOE60_RS03995 PF07338 Protein of unknown function (DUF1471) DOE60_RS04000 PF01810 LysE type translocator DOE60_RS04005 PF07715 TonB-dependent Receptor Plug Domain DOE60_RS04005 PF00593 TonB dependent receptor DOE60_RS04020 PF02322 Cytochrome bd terminal oxidase subunit II DOE60_RS04025 PF01654 Cytochrome bd terminal oxidase subunit I DOE60_RS04035 PF04851 Type III restriction enzyme, res subunit DOE60_RS04035 PF08774 VRR-NUC domain DOE60_RS04040 PF01555 DNA methylase DOE60_RS04040 PF18273 Type III R-M EcoP15I C-terminal domain DOE60_RS04045 PF07690 Major Facilitator Superfamily DOE60_RS04055 PF00376 MerR family regulatory protein DOE60_RS04055 PF09278 MerR, DNA binding DOE60_RS04060 PF00403 Heavy-metal-associated domain DOE60_RS04065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE60_RS04065 PF00529 HlyD membrane-fusion protein of T1SS DOE60_RS04070 PF00873 AcrB/AcrD/AcrF family DOE60_RS04075 PF02321 Outer membrane efflux protein DOE60_RS04095 PF13505 Outer membrane protein beta-barrel domain DOE60_RS04110 PF00563 EAL domain DOE60_RS04110 PF12792 CSS motif domain associated with EAL DOE60_RS04130 PF16970 Type-1 fimbrial protein, A DOE60_RS04135 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE60_RS04135 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS04140 PF13953 PapC C-terminal domain DOE60_RS04140 PF00577 Outer membrane usher protein DOE60_RS04140 PF13954 PapC N-terminal domain DOE60_RS04150 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS04150 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE60_RS04170 PF02685 Glucokinase DOE60_RS04175 PF02656 Domain of unknown function (DUF202) DOE60_RS04185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS04185 PF03466 LysR substrate binding domain DOE60_RS04200 PF02600 Disulfide bond formation protein DsbB DOE60_RS04210 PF01510 N-acetylmuramoyl-L-alanine amidase DOE60_RS04235 PF13981 SopA-like central domain DOE60_RS04235 PF13979 SopA-like catalytic domain DOE60_RS04360 PF04233 Phage Mu protein F like protein DOE60_RS04390 PF00182 Chitinase class I DOE60_RS04455 PF06183 DinI-like family DOE60_RS04495 PF01695 IstB-like ATP binding protein DOE60_RS04530 PF12684 PDDEXK-like domain of unknown function (DUF3799) DOE60_RS04530 PF06630 Enterobacterial exodeoxyribonuclease VIII DOE60_RS04550 PF00589 Phage integrase family DOE60_RS04560 PF00171 Aldehyde dehydrogenase family DOE60_RS04565 PF01472 PUA domain DOE60_RS04565 PF00696 Amino acid kinase family DOE60_RS04570 PF00267 Gram-negative porin DOE60_RS04575 PF07417 Sigma factor-binding transcriptional regulator Crl DOE60_RS04580 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) DOE60_RS04585 PF00156 Phosphoribosyl transferase domain DOE60_RS04590 PF01546 Peptidase family M20/M25/M40 DOE60_RS04590 PF07687 Peptidase dimerisation domain DOE60_RS04595 PF00472 RF-1 domain DOE60_RS04605 PF11798 IMS family HHH motif DOE60_RS04605 PF00817 impB/mucB/samB family DOE60_RS04605 PF11799 impB/mucB/samB family C-terminal domain DOE60_RS04610 PF03734 L,D-transpeptidase catalytic domain DOE60_RS04615 PF13230 Glutamine amidotransferases class-II DOE60_RS04620 PF13580 SIS domain DOE60_RS04625 PF09317 Domain of unknown function (DUF1974) DOE60_RS04625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOE60_RS04625 PF02770 Acyl-CoA dehydrogenase, middle domain DOE60_RS04625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE60_RS04630 PF00795 Carbon-nitrogen hydrolase DOE60_RS04645 PF13505 Outer membrane protein beta-barrel domain DOE60_RS04705 PF14220 Domain of unknown function (DUF4329) DOE60_RS04705 PF03527 RHS protein DOE60_RS04705 PF05593 RHS Repeat DOE60_RS04765 PF04717 Type VI secretion system, phage-baseplate injector DOE60_RS04770 PF05638 Type VI secretion system effector, Hcp DOE60_RS04780 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath DOE60_RS04810 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DOE60_RS04820 PF10431 C-terminal, D2-small domain, of ClpB protein DOE60_RS04820 PF00004 ATPase family associated with various cellular activities (AAA) DOE60_RS04820 PF07724 AAA domain (Cdc48 subfamily) DOE60_RS04820 PF17871 AAA lid domain DOE60_RS04835 PF06761 Intracellular multiplication and human macrophage-killing DOE60_RS04835 PF14331 ImcF-related N-terminal domain DOE60_RS04835 PF06744 Type VI secretion protein IcmF C-terminal DOE60_RS04890 PF00929 Exonuclease DOE60_RS04895 PF00075 RNase H DOE60_RS04900 PF08241 Methyltransferase domain DOE60_RS04905 PF00753 Metallo-beta-lactamase superfamily DOE60_RS04905 PF16123 Hydroxyacylglutathione hydrolase C-terminus DOE60_RS04910 PF01476 LysM domain DOE60_RS04910 PF01464 Transglycosylase SLT domain DOE60_RS04915 PF08241 Methyltransferase domain DOE60_RS04920 PF03372 Endonuclease/Exonuclease/phosphatase family DOE60_RS04925 PF03466 LysR substrate binding domain DOE60_RS04925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS04965 PF09383 NIL domain DOE60_RS04965 PF00005 ABC transporter DOE60_RS04970 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS04975 PF03180 NLPA lipoprotein DOE60_RS04980 PF16358 RcsF lipoprotein DOE60_RS04985 PF01980 tRNA-methyltransferase O DOE60_RS04985 PF18389 TrmO C-terminal domain DOE60_RS04990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOE60_RS04990 PF04073 Aminoacyl-tRNA editing domain DOE60_RS04990 PF03129 Anticodon binding domain DOE60_RS04995 PF04170 NlpE N-terminal domain DOE60_RS04995 PF17185 NlpE C-terminal OB domain DOE60_RS05000 PF00472 RF-1 domain DOE60_RS05005 PF07152 YaeQ protein DOE60_RS05010 PF06786 Uncharacterised protein family (UPF0253) DOE60_RS05015 PF07073 Modulator of Rho-dependent transcription termination (ROF) DOE60_RS05020 PF11734 TilS substrate C-terminal domain DOE60_RS05020 PF01171 PP-loop family DOE60_RS05020 PF09179 TilS substrate binding domain DOE60_RS05025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE60_RS05030 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DOE60_RS05030 PF01276 Orn/Lys/Arg decarboxylase, major domain DOE60_RS05030 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DOE60_RS05035 PF18416 N-acetylglucosamine binding protein domain 2 DOE60_RS05035 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DOE60_RS05040 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DOE60_RS05045 PF01336 OB-fold nucleic acid binding domain DOE60_RS05045 PF02811 PHP domain DOE60_RS05045 PF14579 Helix-hairpin-helix motif DOE60_RS05045 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DOE60_RS05045 PF07733 Bacterial DNA polymerase III alpha NTPase domain DOE60_RS05050 PF01351 Ribonuclease HII DOE60_RS05055 PF02684 Lipid-A-disaccharide synthetase DOE60_RS05060 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DOE60_RS05060 PF00132 Bacterial transferase hexapeptide (six repeats) DOE60_RS05065 PF07977 FabA-like domain DOE60_RS05070 PF00132 Bacterial transferase hexapeptide (six repeats) DOE60_RS05070 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DOE60_RS05075 PF03938 Outer membrane protein (OmpH-like) DOE60_RS05080 PF07244 Surface antigen variable number repeat DOE60_RS05080 PF01103 Surface antigen DOE60_RS05085 PF02163 Peptidase family M50 DOE60_RS05085 PF17820 PDZ domain DOE60_RS05095 PF01255 Putative undecaprenyl diphosphate synthase DOE60_RS05105 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DOE60_RS05105 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DOE60_RS05105 PF13288 DXP reductoisomerase C-terminal domain DOE60_RS05110 PF01765 Ribosome recycling factor DOE60_RS05115 PF00696 Amino acid kinase family DOE60_RS05120 PF00889 Elongation factor TS DOE60_RS05130 PF00318 Ribosomal protein S2 DOE60_RS05135 PF00557 Metallopeptidase family M24 DOE60_RS05140 PF01842 ACT domain DOE60_RS05140 PF01909 Nucleotidyltransferase domain DOE60_RS05140 PF01966 HD domain DOE60_RS05140 PF08335 GlnD PII-uridylyltransferase DOE60_RS05145 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DOE60_RS05145 PF14602 Hexapeptide repeat of succinyl-transferase DOE60_RS05145 PF00132 Bacterial transferase hexapeptide (six repeats) DOE60_RS05150 PF00083 Sugar (and other) transporter DOE60_RS05150 PF07690 Major Facilitator Superfamily DOE60_RS05155 PF11944 Protein of unknown function (DUF3461) DOE60_RS05165 PF13556 PucR C-terminal helix-turn-helix domain DOE60_RS05165 PF17853 GGDEF-like domain DOE60_RS05165 PF05651 Putative sugar diacid recognition DOE60_RS05170 PF00595 PDZ domain DOE60_RS05175 PF01966 HD domain DOE60_RS05175 PF13286 Phosphohydrolase-associated domain DOE60_RS05180 PF01048 Phosphorylase superfamily DOE60_RS05185 PF01497 Periplasmic binding protein DOE60_RS05190 PF03458 UPF0126 domain DOE60_RS05195 PF01521 Iron-sulphur cluster biosynthesis DOE60_RS05200 PF00654 Voltage gated chloride channel DOE60_RS05205 PF00202 Aminotransferase class-III DOE60_RS05215 PF01032 FecCD transport family DOE60_RS05220 PF01497 Periplasmic binding protein DOE60_RS05225 PF00005 ABC transporter DOE60_RS05230 PF07715 TonB-dependent Receptor Plug Domain DOE60_RS05230 PF00593 TonB dependent receptor DOE60_RS05235 PF14814 Bifunctional transglycosylase second domain DOE60_RS05235 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal DOE60_RS05235 PF00912 Transglycosylase DOE60_RS05235 PF00905 Penicillin binding protein transpeptidase domain DOE60_RS05240 PF08482 ATP-dependent helicase C-terminal DOE60_RS05240 PF00271 Helicase conserved C-terminal domain DOE60_RS05240 PF00270 DEAD/DEAH box helicase DOE60_RS05240 PF04408 Helicase associated domain (HA2) DOE60_RS05245 PF02834 LigT like Phosphoesterase DOE60_RS05250 PF17746 SfsA N-terminal OB domain DOE60_RS05250 PF03749 Sugar fermentation stimulation protein RE domain DOE60_RS05255 PF01258 Prokaryotic dksA/traR C4-type zinc finger DOE60_RS05260 PF00749 tRNA synthetases class I (E and Q), catalytic domain DOE60_RS05265 PF12626 Polymerase A arginine-rich C-terminus DOE60_RS05265 PF01743 Poly A polymerase head domain DOE60_RS05265 PF12627 Probable RNA and SrmB- binding site of polymerase A DOE60_RS05270 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DOE60_RS05280 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS05280 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE60_RS05285 PF13953 PapC C-terminal domain DOE60_RS05285 PF13954 PapC N-terminal domain DOE60_RS05285 PF00577 Outer membrane usher protein DOE60_RS05290 PF00419 Fimbrial protein DOE60_RS05295 PF00419 Fimbrial protein DOE60_RS05300 PF00419 Fimbrial protein DOE60_RS05310 PF02548 Ketopantoate hydroxymethyltransferase DOE60_RS05315 PF02569 Pantoate-beta-alanine ligase DOE60_RS05320 PF02261 Aspartate decarboxylase DOE60_RS05325 PF01522 Polysaccharide deacetylase DOE60_RS05330 PF03610 PTS system fructose IIA component DOE60_RS05335 PF01061 ABC-2 type transporter DOE60_RS05340 PF00005 ABC transporter DOE60_RS05345 PF00484 Carbonic anhydrase DOE60_RS05350 PF00156 Phosphoribosyl transferase domain DOE60_RS05355 PF01011 PQQ enzyme repeat DOE60_RS05360 PF07732 Multicopper oxidase DOE60_RS05360 PF07731 Multicopper oxidase DOE60_RS05360 PF00394 Multicopper oxidase DOE60_RS05365 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) DOE60_RS05370 PF17284 Spermidine synthase tetramerisation domain DOE60_RS05375 PF02675 S-adenosylmethionine decarboxylase DOE60_RS05380 PF08220 DeoR-like helix-turn-helix domain DOE60_RS05380 PF00455 DeoR C terminal sensor domain DOE60_RS05385 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DOE60_RS05390 PF17042 Nucleotide-binding C-terminal domain DOE60_RS05390 PF07005 Sugar-binding N-terminal domain DOE60_RS05395 PF03812 2-keto-3-deoxygluconate permease DOE60_RS05400 PF06062 Uncharacterised protein family (UPF0231) DOE60_RS05410 PF11791 Aconitate B N-terminal domain DOE60_RS05410 PF06434 Aconitate hydratase 2 N-terminus DOE60_RS05410 PF00330 Aconitase family (aconitate hydratase) DOE60_RS05415 PF11737 Protein of unknown function (DUF3300) DOE60_RS05430 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS05430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE60_RS05435 PF02817 e3 binding domain DOE60_RS05435 PF00364 Biotin-requiring enzyme DOE60_RS05435 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DOE60_RS05440 PF00456 Transketolase, thiamine diphosphate binding domain DOE60_RS05440 PF17831 Pyruvate dehydrogenase E1 component middle domain DOE60_RS05445 PF07729 FCD domain DOE60_RS05445 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS05450 PF01320 Colicin immunity protein / pyocin immunity protein DOE60_RS05460 PF01320 Colicin immunity protein / pyocin immunity protein DOE60_RS05470 PF01320 Colicin immunity protein / pyocin immunity protein DOE60_RS05475 PF01320 Colicin immunity protein / pyocin immunity protein DOE60_RS05485 PF00324 Amino acid permease DOE60_RS05495 PF04616 Glycosyl hydrolases family 43 DOE60_RS05495 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain DOE60_RS05500 PF17113 Regulatory signalling modulator protein AmpE DOE60_RS05505 PF01510 N-acetylmuramoyl-L-alanine amidase DOE60_RS05510 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DOE60_RS05510 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DOE60_RS05520 PF07963 Prokaryotic N-terminal methylation motif DOE60_RS05525 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DOE60_RS05525 PF00437 Type II/IV secretion system protein DOE60_RS05530 PF00482 Type II secretion system (T2SS), protein F DOE60_RS05535 PF00478 IMP dehydrogenase / GMP reductase domain DOE60_RS05540 PF01121 Dephospho-CoA kinase DOE60_RS05545 PF07072 Cell division protein DOE60_RS05550 PF03884 DNA gyrase inhibitor YacG DOE60_RS05555 PF03466 LysR substrate binding domain DOE60_RS05555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS05560 PF00248 Aldo/keto reductase family DOE60_RS05565 PF07282 Putative transposase DNA-binding domain DOE60_RS05565 PF01385 Probable transposase DOE60_RS05565 PF12323 Helix-turn-helix domain DOE60_RS05575 PF00293 NUDIX domain DOE60_RS05580 PF01043 SecA preprotein cross-linking domain DOE60_RS05580 PF07516 SecA Wing and Scaffold domain DOE60_RS05580 PF02810 SEC-C motif DOE60_RS05580 PF07517 SecA DEAD-like domain DOE60_RS05585 PF06558 Secretion monitor precursor protein (SecM) DOE60_RS05590 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DOE60_RS05595 PF00091 Tubulin/FtsZ family, GTPase domain DOE60_RS05595 PF12327 FtsZ family, C-terminal domain DOE60_RS05600 PF02491 SHS2 domain inserted in FTSA DOE60_RS05605 PF08478 POTRA domain, FtsQ-type DOE60_RS05605 PF03799 Cell division protein FtsQ DOE60_RS05610 PF07478 D-ala D-ala ligase C-terminus DOE60_RS05610 PF01820 D-ala D-ala ligase N-terminus DOE60_RS05615 PF08245 Mur ligase middle domain DOE60_RS05615 PF02875 Mur ligase family, glutamate ligase domain DOE60_RS05615 PF01225 Mur ligase family, catalytic domain DOE60_RS05620 PF04101 Glycosyltransferase family 28 C-terminal domain DOE60_RS05620 PF03033 Glycosyltransferase family 28 N-terminal domain DOE60_RS05625 PF01098 Cell cycle protein DOE60_RS05630 PF02875 Mur ligase family, glutamate ligase domain DOE60_RS05630 PF08245 Mur ligase middle domain DOE60_RS05635 PF00953 Glycosyl transferase family 4 DOE60_RS05635 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DOE60_RS05640 PF02875 Mur ligase family, glutamate ligase domain DOE60_RS05640 PF08245 Mur ligase middle domain DOE60_RS05640 PF01225 Mur ligase family, catalytic domain DOE60_RS05645 PF08245 Mur ligase middle domain DOE60_RS05645 PF01225 Mur ligase family, catalytic domain DOE60_RS05645 PF02875 Mur ligase family, glutamate ligase domain DOE60_RS05650 PF00905 Penicillin binding protein transpeptidase domain DOE60_RS05650 PF03717 Penicillin-binding Protein dimerisation domain DOE60_RS05660 PF04999 Cell division protein FtsL DOE60_RS05665 PF01795 MraW methylase family DOE60_RS05670 PF02381 MraZ protein, putative antitoxin-like DOE60_RS05675 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS05675 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DOE60_RS05680 PF10369 Small subunit of acetolactate synthase DOE60_RS05685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE60_RS05685 PF00205 Thiamine pyrophosphate enzyme, central domain DOE60_RS05685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE60_RS05690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS05690 PF03466 LysR substrate binding domain DOE60_RS05695 PF08054 Leucine operon leader peptide DOE60_RS05700 PF00682 HMGL-like DOE60_RS05700 PF08502 LeuA allosteric (dimerisation) domain DOE60_RS05705 PF00180 Isocitrate/isopropylmalate dehydrogenase DOE60_RS05710 PF00330 Aconitase family (aconitate hydratase) DOE60_RS05715 PF00694 Aconitase C-terminal domain DOE60_RS05720 PF07690 Major Facilitator Superfamily DOE60_RS05730 PF12793 Sugar transport-related sRNA regulator N-term DOE60_RS05730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE60_RS05740 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS05745 PF00005 ABC transporter DOE60_RS05750 PF09335 SNARE associated Golgi protein DOE60_RS05755 PF02311 AraC-like ligand binding domain DOE60_RS05755 PF12833 Helix-turn-helix domain DOE60_RS05760 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE60_RS05765 PF02610 L-arabinose isomerase DOE60_RS05765 PF11762 L-arabinose isomerase C-terminal domain DOE60_RS05770 PF00596 Class II Aldolase and Adducin N-terminal domain DOE60_RS05795 PF00176 SNF2 family N-terminal domain DOE60_RS05795 PF12137 RNA polymerase recycling family C-terminal DOE60_RS05795 PF18339 RapA N-terminal Tudor like domain 1 DOE60_RS05795 PF00271 Helicase conserved C-terminal domain DOE60_RS05795 PF18337 RapA N-terminal Tudor like domain DOE60_RS05800 PF00849 RNA pseudouridylate synthase DOE60_RS05805 PF00226 DnaJ domain DOE60_RS05805 PF05099 Tellurite resistance protein TerB DOE60_RS05810 PF04453 LPS transport system D DOE60_RS05810 PF03968 OstA-like protein DOE60_RS05815 PF09312 SurA N-terminal domain DOE60_RS05815 PF00639 PPIC-type PPIASE domain DOE60_RS05820 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DOE60_RS05825 PF00398 Ribosomal RNA adenine dimethylase DOE60_RS05830 PF04379 ApaG domain DOE60_RS05835 PF00149 Calcineurin-like phosphoesterase DOE60_RS05840 PF00186 Dihydrofolate reductase DOE60_RS05850 PF00999 Sodium/hydrogen exchanger family DOE60_RS05850 PF02254 TrkA-N domain DOE60_RS05855 PF02525 Flavodoxin-like fold DOE60_RS05860 PF06004 Bacterial protein of unknown function (DUF903) DOE60_RS05865 PF00083 Sugar (and other) transporter DOE60_RS05875 PF01494 FAD binding domain DOE60_RS05880 PF01012 Electron transfer flavoprotein domain DOE60_RS05880 PF00766 Electron transfer flavoprotein FAD-binding domain DOE60_RS05885 PF01012 Electron transfer flavoprotein domain DOE60_RS05890 PF02028 BCCT, betaine/carnitine/choline family transporter DOE60_RS05895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE60_RS05895 PF02770 Acyl-CoA dehydrogenase, middle domain DOE60_RS05895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOE60_RS05900 PF02515 CoA-transferase family III DOE60_RS05905 PF00501 AMP-binding enzyme DOE60_RS05905 PF13193 AMP-binding enzyme C-terminal domain DOE60_RS05910 PF00378 Enoyl-CoA hydratase/isomerase DOE60_RS05920 PF00884 Sulfatase DOE60_RS05940 PF07180 CaiF/GrlA transcriptional regulator DOE60_RS05945 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DOE60_RS05945 PF02142 MGS-like domain DOE60_RS05945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOE60_RS05950 PF00117 Glutamine amidotransferase class-I DOE60_RS05950 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DOE60_RS05965 PF05173 Dihydrodipicolinate reductase, C-terminus DOE60_RS05965 PF01113 Dihydrodipicolinate reductase, N-terminus DOE60_RS05970 PF01156 Inosine-uridine preferring nucleoside hydrolase DOE60_RS05975 PF02401 LytB protein DOE60_RS05980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOE60_RS05985 PF01252 Signal peptidase (SPase) II DOE60_RS05990 PF08264 Anticodon-binding domain of tRNA DOE60_RS05990 PF00133 tRNA synthetases class I (I, L, M and V) DOE60_RS05990 PF06827 Zinc finger found in FPG and IleRS DOE60_RS05995 PF01687 Riboflavin kinase DOE60_RS05995 PF06574 FAD synthetase DOE60_RS06000 PF10837 Protein of unknown function (DUF2575) DOE60_RS06005 PF01649 Ribosomal protein S20 DOE60_RS06010 PF03466 LysR substrate binding domain DOE60_RS06010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS06015 PF06965 Na+/H+ antiporter 1 DOE60_RS06030 PF13186 Iron-sulfur cluster-binding domain DOE60_RS06030 PF04055 Radical SAM superfamily DOE60_RS06035 PF00884 Sulfatase DOE60_RS06035 PF16385 Domain of unknown function DOE60_RS06045 PF02872 5'-nucleotidase, C-terminal domain DOE60_RS06045 PF00149 Calcineurin-like phosphoesterase DOE60_RS06060 PF03466 LysR substrate binding domain DOE60_RS06060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS06080 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS06080 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE60_RS06085 PF16970 Type-1 fimbrial protein, A DOE60_RS06090 PF00419 Fimbrial protein DOE60_RS06100 PF00577 Outer membrane usher protein DOE60_RS06100 PF13953 PapC C-terminal domain DOE60_RS06100 PF13954 PapC N-terminal domain DOE60_RS06105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS06105 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE60_RS06110 PF00419 Fimbrial protein DOE60_RS06125 PF00704 Glycosyl hydrolases family 18 DOE60_RS06145 PF03466 LysR substrate binding domain DOE60_RS06145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS06150 PF00684 DnaJ central domain DOE60_RS06150 PF01556 DnaJ C terminal domain DOE60_RS06150 PF00226 DnaJ domain DOE60_RS06155 PF00012 Hsp70 protein DOE60_RS06160 PF10807 Protein of unknown function (DUF2541) DOE60_RS06165 PF13099 Domain of unknown function (DUF3944) DOE60_RS06165 PF03981 Ubiquinol-cytochrome C chaperone DOE60_RS06170 PF01184 GPR1/FUN34/yaaH family DOE60_RS06175 PF00994 Probable molybdopterin binding domain DOE60_RS06180 PF00923 Transaldolase/Fructose-6-phosphate aldolase DOE60_RS06185 PF01235 Sodium:alanine symporter family DOE60_RS06190 PF03883 Peroxide stress protein YaaA DOE60_RS06195 PF14821 Threonine synthase N terminus DOE60_RS06195 PF00291 Pyridoxal-phosphate dependent enzyme DOE60_RS06200 PF00288 GHMP kinases N terminal domain DOE60_RS06200 PF08544 GHMP kinases C terminal DOE60_RS06205 PF00742 Homoserine dehydrogenase DOE60_RS06205 PF03447 Homoserine dehydrogenase, NAD binding domain DOE60_RS06205 PF01842 ACT domain DOE60_RS06205 PF00696 Amino acid kinase family DOE60_RS06205 PF13840 ACT domain DOE60_RS06210 PF08254 Threonine leader peptide DOE60_RS06215 PF00588 SpoU rRNA Methylase family DOE60_RS06230 PF00072 Response regulator receiver domain DOE60_RS06230 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS06240 PF15977 Winged helix-turn-helix DNA binding DOE60_RS06250 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS06250 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE60_RS06255 PF00577 Outer membrane usher protein DOE60_RS06255 PF13953 PapC C-terminal domain DOE60_RS06255 PF13954 PapC N-terminal domain DOE60_RS06270 PF06123 Inner membrane protein CreD DOE60_RS06275 PF06123 Inner membrane protein CreD DOE60_RS06280 PF00672 HAMP domain DOE60_RS06280 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS06280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS06285 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS06285 PF00072 Response regulator receiver domain DOE60_RS06290 PF05981 CreA protein DOE60_RS06295 PF12833 Helix-turn-helix domain DOE60_RS06295 PF06445 GyrI-like small molecule binding domain DOE60_RS06300 PF00300 Histidine phosphatase superfamily (branch 1) DOE60_RS06305 PF01931 Protein of unknown function DUF84 DOE60_RS06310 PF01371 Trp repressor protein DOE60_RS06315 PF14718 Soluble lytic murein transglycosylase L domain DOE60_RS06315 PF01464 Transglycosylase SLT domain DOE60_RS06325 PF12848 ABC transporter DOE60_RS06325 PF00005 ABC transporter DOE60_RS06330 PF01381 Helix-turn-helix DOE60_RS06330 PF13521 AAA domain DOE60_RS06335 PF18073 Rubredoxin metal binding domain DOE60_RS06340 PF18429 Domain of unknown function (DUF5609) DOE60_RS06350 PF10144 Bacterial virulence factor haemolysin DOE60_RS06355 PF03099 Biotin/lipoate A/B protein ligase family DOE60_RS06355 PF10437 Bacterial lipoate protein ligase C-terminus DOE60_RS06360 PF06551 Protein of unknown function (DUF1120) DOE60_RS06370 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS06375 PF13953 PapC C-terminal domain DOE60_RS06375 PF00577 Outer membrane usher protein DOE60_RS06375 PF13954 PapC N-terminal domain DOE60_RS06385 PF01048 Phosphorylase superfamily DOE60_RS06390 PF01676 Metalloenzyme superfamily DOE60_RS06395 PF02885 Glycosyl transferase family, helical bundle domain DOE60_RS06395 PF00591 Glycosyl transferase family, a/b domain DOE60_RS06395 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DOE60_RS06400 PF01791 DeoC/LacD family aldolase DOE60_RS06405 PF11230 Protein of unknown function (DUF3029) DOE60_RS06410 PF04055 Radical SAM superfamily DOE60_RS06415 PF01026 TatD related DNase DOE60_RS06420 PF01734 Patatin-like phospholipase DOE60_RS06425 PF07043 Protein of unknown function (DUF1328) DOE60_RS06430 PF04972 BON domain DOE60_RS06435 PF00009 Elongation factor Tu GTP binding domain DOE60_RS06435 PF03144 Elongation factor Tu domain 2 DOE60_RS06435 PF16658 Class II release factor RF3, C-terminal domain DOE60_RS06440 PF13419 Haloacid dehalogenase-like hydrolase DOE60_RS06445 PF00583 Acetyltransferase (GNAT) family DOE60_RS06450 PF03603 DNA polymerase III psi subunit DOE60_RS06455 PF05175 Methyltransferase small domain DOE60_RS06455 PF08468 Methyltransferase small domain N-terminal DOE60_RS06475 PF07256 Protein of unknown function (DUF1435) DOE60_RS06485 PF06276 Ferric iron reductase FhuF-like transporter DOE60_RS06485 PF11575 FhuF 2Fe-2S C-terminal domain DOE60_RS06490 PF04073 Aminoacyl-tRNA editing domain DOE60_RS06495 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS06500 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS06505 PF06738 Putative threonine/serine exporter DOE60_RS06510 PF12821 Threonine/Serine exporter, ThrE DOE60_RS06515 PF17948 DnaT DNA-binding domain DOE60_RS06520 PF01695 IstB-like ATP binding protein DOE60_RS06525 PF10696 Protein of unknown function (DUF2501) DOE60_RS06530 PF00884 Sulfatase DOE60_RS06535 PF01380 SIS domain DOE60_RS06540 PF01380 SIS domain DOE60_RS06545 PF03613 PTS system mannose/fructose/sorbose family IID component DOE60_RS06550 PF03609 PTS system sorbose-specific iic component DOE60_RS06555 PF03830 PTS system sorbose subfamily IIB component DOE60_RS06565 PF00158 Sigma-54 interaction domain DOE60_RS06565 PF00874 PRD domain DOE60_RS06570 PF00672 HAMP domain DOE60_RS06570 PF02203 Tar ligand binding domain homologue DOE60_RS06570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE60_RS06575 PF02554 Carbon starvation protein CstA DOE60_RS06575 PF13722 5TM C-terminal transporter carbon starvation CstA DOE60_RS06580 PF04328 Selenoprotein, putative DOE60_RS06585 PF07683 Cobalamin synthesis protein cobW C-terminal domain DOE60_RS06585 PF02492 CobW/HypB/UreG, nucleotide-binding domain DOE60_RS06590 PF04471 Restriction endonuclease DOE60_RS06590 PF14338 Mrr N-terminal domain DOE60_RS06595 PF08463 EcoEI R protein C-terminal DOE60_RS06595 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) DOE60_RS06595 PF04851 Type III restriction enzyme, res subunit DOE60_RS06595 PF00271 Helicase conserved C-terminal domain DOE60_RS06600 PF02384 N-6 DNA Methylase DOE60_RS06600 PF12161 HsdM N-terminal domain DOE60_RS06610 PF01420 Type I restriction modification DNA specificity domain DOE60_RS06615 PF08845 Toxin SymE, type I toxin-antitoxin system DOE60_RS06635 PF00171 Aldehyde dehydrogenase family DOE60_RS06640 PF04754 Putative transposase, YhgA-like DOE60_RS06645 PF07690 Major Facilitator Superfamily DOE60_RS06650 PF04286 Protein of unknown function (DUF445) DOE60_RS06655 PF06779 Uncharacterised MFS-type transporter YbfB DOE60_RS06660 PF07670 Nucleoside recognition DOE60_RS06665 PF07670 Nucleoside recognition DOE60_RS06670 PF01979 Amidohydrolase family DOE60_RS06675 PF03466 LysR substrate binding domain DOE60_RS06675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS06680 PF01177 Asp/Glu/Hydantoin racemase DOE60_RS06690 PF00579 tRNA synthetases class I (W and Y) DOE60_RS06695 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS06695 PF07729 FCD domain DOE60_RS06705 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DOE60_RS06705 PF03625 Domain of unknown function DUF302 DOE60_RS06735 PF09857 Putative toxin of bacterial toxin-antitoxin pair DOE60_RS06740 PF13847 Methyltransferase domain DOE60_RS06750 PF01709 Transcriptional regulator DOE60_RS06780 PF00005 ABC transporter DOE60_RS06815 PF01527 Transposase DOE60_RS06825 PF02371 Transposase IS116/IS110/IS902 family DOE60_RS06825 PF01548 Transposase DOE60_RS06845 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS06845 PF00107 Zinc-binding dehydrogenase DOE60_RS06850 PF01202 Shikimate kinase DOE60_RS06855 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS06855 PF00107 Zinc-binding dehydrogenase DOE60_RS06860 PF00106 short chain dehydrogenase DOE60_RS06865 PF02447 GntP family permease DOE60_RS06870 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS06875 PF03739 Lipopolysaccharide export system permease LptF/LptG DOE60_RS06880 PF03739 Lipopolysaccharide export system permease LptF/LptG DOE60_RS06895 PF02789 Cytosol aminopeptidase family, N-terminal domain DOE60_RS06895 PF00883 Cytosol aminopeptidase family, catalytic domain DOE60_RS06900 PF04364 DNA polymerase III chi subunit, HolC DOE60_RS06905 PF00133 tRNA synthetases class I (I, L, M and V) DOE60_RS06905 PF10458 Valyl tRNA synthetase tRNA binding arm DOE60_RS06905 PF08264 Anticodon-binding domain of tRNA DOE60_RS06910 PF05987 Bacterial protein of unknown function (DUF898) DOE60_RS06915 PF00583 Acetyltransferase (GNAT) family DOE60_RS06920 PF12276 Protein of unknown function (DUF3617) DOE60_RS06935 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DOE60_RS06940 PF06877 Regulator of ribonuclease activity B DOE60_RS06945 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DOE60_RS06945 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DOE60_RS06950 PF04074 YhcH/YjgK/YiaL DOE60_RS06965 PF00696 Amino acid kinase family DOE60_RS06970 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DOE60_RS06970 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DOE60_RS06975 PF03606 C4-dicarboxylate anaerobic carrier DOE60_RS06980 PF02863 Arginine repressor, C-terminal domain DOE60_RS06980 PF01316 Arginine repressor, DNA binding domain DOE60_RS06990 PF08052 PyrBI operon leader peptide DOE60_RS06995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DOE60_RS06995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DOE60_RS07000 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DOE60_RS07000 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DOE60_RS07005 PF01042 Endoribonuclease L-PSP DOE60_RS07010 PF00689 Cation transporting ATPase, C-terminus DOE60_RS07010 PF00690 Cation transporter/ATPase, N-terminus DOE60_RS07015 PF17059 MgtA leader peptide DOE60_RS07020 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS07025 PF00367 phosphotransferase system, EIIB DOE60_RS07025 PF02378 Phosphotransferase system, EIIC DOE60_RS07030 PF11941 Domain of unknown function (DUF3459) DOE60_RS07030 PF00128 Alpha amylase, catalytic domain DOE60_RS07035 PF03477 ATP cone domain DOE60_RS07035 PF13597 Anaerobic ribonucleoside-triphosphate reductase DOE60_RS07045 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DOE60_RS07050 PF01850 PIN domain DOE60_RS07055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE60_RS07055 PF00874 PRD domain DOE60_RS07055 PF05043 Mga helix-turn-helix domain DOE60_RS07055 PF08279 HTH domain DOE60_RS07060 PF07071 KDGP aldolase DOE60_RS07065 PF03841 L-seryl-tRNA selenium transferase DOE60_RS07070 PF01979 Amidohydrolase family DOE60_RS07100 PF07361 Cytochrome b562 DOE60_RS07105 PF01523 Putative modulator of DNA gyrase DOE60_RS07110 PF04751 Protein of unknown function (DUF615) DOE60_RS07115 PF08245 Mur ligase middle domain DOE60_RS07115 PF01225 Mur ligase family, catalytic domain DOE60_RS07115 PF02875 Mur ligase family, glutamate ligase domain DOE60_RS07120 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DOE60_RS07125 PF02653 Branched-chain amino acid transport system / permease component DOE60_RS07130 PF02653 Branched-chain amino acid transport system / permease component DOE60_RS07135 PF00005 ABC transporter DOE60_RS07140 PF13407 Periplasmic binding protein domain DOE60_RS07145 PF00719 Inorganic pyrophosphatase DOE60_RS07150 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like DOE60_RS07155 PF04357 TamB, inner membrane protein subunit of TAM complex DOE60_RS07160 PF07244 Surface antigen variable number repeat DOE60_RS07160 PF01103 Surface antigen DOE60_RS07160 PF17243 POTRA domain TamA domain 1 DOE60_RS07165 PF01625 Peptide methionine sulfoxide reductase DOE60_RS07170 PF01595 Cyclin M transmembrane N-terminal domain DOE60_RS07170 PF03471 Transporter associated domain DOE60_RS07170 PF00571 CBS domain DOE60_RS07175 PF06526 Protein of unknown function (DUF1107) DOE60_RS07185 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) DOE60_RS07190 PF00459 Inositol monophosphatase family DOE60_RS07195 PF02872 5'-nucleotidase, C-terminal domain DOE60_RS07195 PF00149 Calcineurin-like phosphoesterase DOE60_RS07200 PF01638 HxlR-like helix-turn-helix DOE60_RS07205 PF05368 NmrA-like family DOE60_RS07210 PF00892 EamA-like transporter family DOE60_RS07215 PF01814 Hemerythrin HHE cation binding domain DOE60_RS07215 PF04405 Domain of Unknown function (DUF542) DOE60_RS07220 PF00324 Amino acid permease DOE60_RS07225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOE60_RS07225 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DOE60_RS07235 PF08525 Opacity-associated protein A N-terminal motif DOE60_RS07235 PF04225 Opacity-associated protein A LysM-like domain DOE60_RS07245 PF03948 Ribosomal protein L9, C-terminal domain DOE60_RS07245 PF01281 Ribosomal protein L9, N-terminal domain DOE60_RS07250 PF01084 Ribosomal protein S18 DOE60_RS07255 PF00436 Single-strand binding protein family DOE60_RS07260 PF01250 Ribosomal protein S6 DOE60_RS07270 PF07338 Protein of unknown function (DUF1471) DOE60_RS07275 PF00596 Class II Aldolase and Adducin N-terminal domain DOE60_RS07280 PF01261 Xylose isomerase-like TIM barrel DOE60_RS07285 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DOE60_RS07290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE60_RS07295 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE60_RS07300 PF03611 PTS system sugar-specific permease component DOE60_RS07310 PF08220 DeoR-like helix-turn-helix domain DOE60_RS07310 PF00455 DeoR C terminal sensor domain DOE60_RS07315 PF00326 Prolyl oligopeptidase family DOE60_RS07320 PF07338 Protein of unknown function (DUF1471) DOE60_RS07325 PF07338 Protein of unknown function (DUF1471) DOE60_RS07330 PF02770 Acyl-CoA dehydrogenase, middle domain DOE60_RS07330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE60_RS07330 PF18158 Adaptive response protein AidB N-terminal domain DOE60_RS07335 PF03738 Glutathionylspermidine synthase preATP-grasp DOE60_RS07340 PF06693 Protein of unknown function (DUF1190) DOE60_RS07345 PF03994 Domain of Unknown Function (DUF350) DOE60_RS07350 PF10679 Protein of unknown function (DUF2491) DOE60_RS07360 PF04012 PspA/IM30 family DOE60_RS07365 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) DOE60_RS07370 PF00588 SpoU rRNA Methylase family DOE60_RS07370 PF08032 RNA 2'-O ribose methyltransferase substrate binding DOE60_RS07375 PF17876 Cold shock domain DOE60_RS07375 PF00575 S1 RNA binding domain DOE60_RS07375 PF08206 Ribonuclease B OB domain DOE60_RS07375 PF00773 RNB domain DOE60_RS07375 PF08461 Ribonuclease R winged-helix domain DOE60_RS07380 PF02082 Transcriptional regulator DOE60_RS07390 PF00709 Adenylosuccinate synthetase DOE60_RS07395 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) DOE60_RS07400 PF01145 SPFH domain / Band 7 family DOE60_RS07405 PF01145 SPFH domain / Band 7 family DOE60_RS07405 PF12221 Bacterial membrane protein N terminal DOE60_RS07410 PF16360 GTP-binding GTPase Middle Region DOE60_RS07410 PF01926 50S ribosome-binding GTPase DOE60_RS07410 PF13167 GTP-binding GTPase N-terminal DOE60_RS07415 PF17209 Hfq protein DOE60_RS07430 PF01520 N-acetylmuramoyl-L-alanine amidase DOE60_RS07435 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DOE60_RS07440 PF03853 YjeF-related protein N-terminus DOE60_RS07440 PF01256 Carbohydrate kinase DOE60_RS07445 PF08331 Domain of unknown function (DUF1730) DOE60_RS07465 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE60_RS07470 PF00929 Exonuclease DOE60_RS07475 PF03193 RsgA GTPase DOE60_RS07480 PF02666 Phosphatidylserine decarboxylase DOE60_RS07485 PF12795 Mechanosensitive ion channel porin domain DOE60_RS07485 PF00924 Mechanosensitive ion channel DOE60_RS07485 PF12794 Mechanosensitive ion channel inner membrane domain 1 DOE60_RS07490 PF13520 Amino acid permease DOE60_RS07495 PF00152 tRNA synthetases class II (D, K and N) DOE60_RS07500 PF00890 FAD binding domain DOE60_RS07500 PF02910 Fumarate reductase flavoprotein C-term DOE60_RS07505 PF13085 2Fe-2S iron-sulfur cluster binding domain DOE60_RS07505 PF13183 4Fe-4S dicluster domain DOE60_RS07510 PF02300 Fumarate reductase subunit C DOE60_RS07515 PF02313 Fumarate reductase subunit D DOE60_RS07520 PF08212 Lipocalin-like domain DOE60_RS07525 PF00893 Small Multidrug Resistance protein DOE60_RS07530 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS07535 PF08085 Entericidin EcnA/B family DOE60_RS07540 PF08085 Entericidin EcnA/B family DOE60_RS07545 PF08207 Elongation factor P (EF-P) KOW-like domain DOE60_RS07545 PF09285 Elongation factor P, C-terminal DOE60_RS07545 PF01132 Elongation factor P (EF-P) OB domain DOE60_RS07550 PF04055 Radical SAM superfamily DOE60_RS07555 PF06977 SdiA-regulated DOE60_RS07575 PF02432 Fimbrial, major and minor subunit DOE60_RS07585 PF17547 Family of unknown function (DUF5462) DOE60_RS07590 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS07595 PF13954 PapC N-terminal domain DOE60_RS07595 PF00577 Outer membrane usher protein DOE60_RS07605 PF03333 Adhesin biosynthesis transcription regulatory protein DOE60_RS07610 PF04703 FaeA-like protein DOE60_RS07620 PF01797 Transposase IS200 like DOE60_RS07625 PF15922 YjeJ-like DOE60_RS07630 PF13698 Domain of unknown function (DUF4156) DOE60_RS07635 PF00118 TCP-1/cpn60 chaperonin family DOE60_RS07640 PF00166 Chaperonin 10 Kd subunit DOE60_RS07645 PF13520 Amino acid permease DOE60_RS07650 PF04186 FxsA cytoplasmic membrane protein DOE60_RS07655 PF10415 Fumarase C C-terminus DOE60_RS07655 PF00206 Lyase DOE60_RS07660 PF03605 Anaerobic c4-dicarboxylate membrane transporter DOE60_RS07665 PF03091 CutA1 divalent ion tolerance protein DOE60_RS07670 PF11412 Disulphide bond corrector protein DsbC DOE60_RS07670 PF02683 Cytochrome C biogenesis protein transmembrane region DOE60_RS07685 PF13356 Arm DNA-binding domain DOE60_RS07685 PF00589 Phage integrase family DOE60_RS07690 PF01022 Bacterial regulatory protein, arsR family DOE60_RS07695 PF03756 A-factor biosynthesis hotdog domain DOE60_RS07700 PF00067 Cytochrome P450 DOE60_RS07725 PF13166 AAA domain DOE60_RS07770 PF12833 Helix-turn-helix domain DOE60_RS07775 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS07790 PF06977 SdiA-regulated DOE60_RS07800 PF02613 Nitrate reductase delta subunit DOE60_RS07805 PF04976 DMSO reductase anchor subunit (DmsC) DOE60_RS07810 PF12800 4Fe-4S binding domain DOE60_RS07810 PF13247 4Fe-4S dicluster domain DOE60_RS07815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS07815 PF00384 Molybdopterin oxidoreductase DOE60_RS07815 PF01568 Molydopterin dinucleotide binding domain DOE60_RS07820 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DOE60_RS07820 PF17203 Single cache domain 3 DOE60_RS07820 PF00989 PAS fold DOE60_RS07820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS07825 PF00072 Response regulator receiver domain DOE60_RS07835 PF03605 Anaerobic c4-dicarboxylate membrane transporter DOE60_RS07840 PF05683 Fumarase C-terminus DOE60_RS07840 PF05681 Fumarate hydratase (Fumerase) DOE60_RS07845 PF02056 Family 4 glycosyl hydrolase DOE60_RS07845 PF11975 Family 4 glycosyl hydrolase C-terminal domain DOE60_RS07850 PF12833 Helix-turn-helix domain DOE60_RS07855 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DOE60_RS07855 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DOE60_RS07855 PF01276 Orn/Lys/Arg decarboxylase, major domain DOE60_RS07860 PF12833 Helix-turn-helix domain DOE60_RS07865 PF13520 Amino acid permease DOE60_RS07870 PF08019 Phosphoethanolamine transferase EptA/EptB DOE60_RS07870 PF00884 Sulfatase DOE60_RS07875 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS07875 PF00072 Response regulator receiver domain DOE60_RS07880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS07880 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS07890 PF00083 Sugar (and other) transporter DOE60_RS07890 PF08946 Osmosensory transporter coiled coil DOE60_RS07895 PF03831 PhnA domain DOE60_RS07895 PF08274 PhnA Zinc-Ribbon DOE60_RS07900 PF06983 3-demethylubiquinone-9 3-methyltransferase DOE60_RS07905 PF00005 ABC transporter DOE60_RS07915 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS07920 PF06754 Phosphonate metabolism protein PhnG DOE60_RS07925 PF05845 Bacterial phosphonate metabolism protein (PhnH) DOE60_RS07930 PF05861 Bacterial phosphonate metabolism protein (PhnI) DOE60_RS07935 PF06007 Phosphonate metabolism protein PhnJ DOE60_RS07940 PF00005 ABC transporter DOE60_RS07945 PF00005 ABC transporter DOE60_RS07950 PF07969 Amidohydrolase family DOE60_RS07960 PF00583 Acetyltransferase (GNAT) family DOE60_RS07965 PF12706 Beta-lactamase superfamily domain DOE60_RS07970 PF14863 Alkyl sulfatase dimerisation DOE60_RS07970 PF00753 Metallo-beta-lactamase superfamily DOE60_RS07970 PF14864 Alkyl sulfatase C-terminal DOE60_RS07975 PF17090 Uncharacterised protein family DOE60_RS07980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE60_RS07980 PF00529 HlyD membrane-fusion protein of T1SS DOE60_RS07985 PF04632 Fusaric acid resistance protein family DOE60_RS07990 PF02321 Outer membrane efflux protein DOE60_RS08000 PF08238 Sel1 repeat DOE60_RS08005 PF00375 Sodium:dicarboxylate symporter family DOE60_RS08020 PF03916 Polysulphide reductase, NrfD DOE60_RS08025 PF13247 4Fe-4S dicluster domain DOE60_RS08025 PF00037 4Fe-4S binding domain DOE60_RS08030 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) DOE60_RS08030 PF13435 Cytochrome c554 and c-prime DOE60_RS08035 PF02335 Cytochrome c552 DOE60_RS08045 PF16177 Acetyl-coenzyme A synthetase N-terminus DOE60_RS08045 PF00501 AMP-binding enzyme DOE60_RS08045 PF13193 AMP-binding enzyme C-terminal domain DOE60_RS08060 PF00474 Sodium:solute symporter family DOE60_RS08065 PF04172 LrgB-like family DOE60_RS08070 PF03788 LrgA family DOE60_RS08075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS08075 PF03466 LysR substrate binding domain DOE60_RS08080 PF00999 Sodium/hydrogen exchanger family DOE60_RS08090 PF00860 Permease family DOE60_RS08100 PF02798 Glutathione S-transferase, N-terminal domain DOE60_RS08100 PF00043 Glutathione S-transferase, C-terminal domain DOE60_RS08105 PF00376 MerR family regulatory protein DOE60_RS08105 PF09278 MerR, DNA binding DOE60_RS08110 PF12833 Helix-turn-helix domain DOE60_RS08115 PF12792 CSS motif domain associated with EAL DOE60_RS08115 PF00563 EAL domain DOE60_RS08120 PF15940 Family of unknown function DOE60_RS08125 PF00664 ABC transporter transmembrane region DOE60_RS08125 PF00005 ABC transporter DOE60_RS08155 PF00436 Single-strand binding protein family DOE60_RS08165 PF17755 UvrA DNA-binding domain DOE60_RS08165 PF17760 UvrA interaction domain DOE60_RS08165 PF00005 ABC transporter DOE60_RS08180 PF04237 YjbR DOE60_RS08185 PF01894 Uncharacterised protein family UPF0047 DOE60_RS08190 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DOE60_RS08195 PF00155 Aminotransferase class I and II DOE60_RS08200 PF01168 Alanine racemase, N-terminal domain DOE60_RS08200 PF00842 Alanine racemase, C-terminal domain DOE60_RS08205 PF00772 DnaB-like helicase N terminal domain DOE60_RS08205 PF03796 DnaB-like helicase C terminal domain DOE60_RS08210 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS08210 PF00107 Zinc-binding dehydrogenase DOE60_RS08215 PF09583 Phage shock protein G (Phageshock_PspG) DOE60_RS08220 PF01207 Dihydrouridine synthase (Dus) DOE60_RS08230 PF01475 Ferric uptake regulator family DOE60_RS08235 PF05532 CsbD-like DOE60_RS08245 PF01554 MatE DOE60_RS08250 PF00717 Peptidase S24-like DOE60_RS08250 PF01726 LexA DNA binding domain DOE60_RS08255 PF01219 Prokaryotic diacylglycerol kinase DOE60_RS08260 PF01553 Acyltransferase DOE60_RS08265 PF01040 UbiA prenyltransferase family DOE60_RS08270 PF04345 Chorismate lyase DOE60_RS08275 PF07148 Maltose operon periplasmic protein precursor (MalM) DOE60_RS08280 PF02264 LamB porin DOE60_RS08285 PF17912 MalK OB fold domain DOE60_RS08285 PF00005 ABC transporter DOE60_RS08290 PF01547 Bacterial extracellular solute-binding protein DOE60_RS08295 PF14785 Maltose transport system permease protein MalF P2 domain DOE60_RS08295 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS08300 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS08305 PF00083 Sugar (and other) transporter DOE60_RS08310 PF06146 Phosphate-starvation-inducible E DOE60_RS08315 PF06082 Exopolysaccharide biosynthesis protein YbjH DOE60_RS08320 PF06251 Capsule biosynthesis GfcC DOE60_RS08325 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF DOE60_RS08335 PF00342 Phosphoglucose isomerase DOE60_RS08340 PF00696 Amino acid kinase family DOE60_RS08340 PF01842 ACT domain DOE60_RS08345 PF08765 Mor transcription activator family DOE60_RS08355 PF01464 Transglycosylase SLT domain DOE60_RS08435 PF08400 Prophage tail fibre N-terminal DOE60_RS08435 PF07484 Phage Tail Collar Domain DOE60_RS08435 PF03335 Phage tail fibre repeat DOE60_RS08440 PF02413 Caudovirales tail fibre assembly protein, lambda gpK DOE60_RS08465 PF00455 DeoR C terminal sensor domain DOE60_RS08465 PF08220 DeoR-like helix-turn-helix domain DOE60_RS08470 PF11656 YjbD family (DUF3811) DOE60_RS08475 PF00849 RNA pseudouridylate synthase DOE60_RS08475 PF01479 S4 domain DOE60_RS08480 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) DOE60_RS08490 PF03575 Peptidase family S51 DOE60_RS08495 PF02690 Na+/Pi-cotransporter DOE60_RS08500 PF02310 B12 binding domain DOE60_RS08500 PF02965 Vitamin B12 dependent methionine synthase, activation domain DOE60_RS08500 PF00809 Pterin binding enzyme DOE60_RS08500 PF02574 Homocysteine S-methyltransferase DOE60_RS08500 PF02607 B12 binding domain DOE60_RS08510 PF01614 Bacterial transcriptional regulator DOE60_RS08510 PF09339 IclR helix-turn-helix domain DOE60_RS08520 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) DOE60_RS08525 PF00463 Isocitrate lyase family DOE60_RS08530 PF01274 Malate synthase DOE60_RS08535 PF04204 Homoserine O-succinyltransferase DOE60_RS08540 PF13673 Acetyltransferase (GNAT) domain DOE60_RS08565 PF02142 MGS-like domain DOE60_RS08565 PF01808 AICARFT/IMPCHase bienzyme DOE60_RS08570 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DOE60_RS08570 PF02843 Phosphoribosylglycinamide synthetase, C domain DOE60_RS08570 PF02844 Phosphoribosylglycinamide synthetase, N domain DOE60_RS08575 PF00158 Sigma-54 interaction domain DOE60_RS08575 PF00072 Response regulator receiver domain DOE60_RS08575 PF02954 Bacterial regulatory protein, Fis family DOE60_RS08580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS08580 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS08585 PF13801 Heavy-metal resistance DOE60_RS08590 PF07356 Protein of unknown function (DUF1481) DOE60_RS08595 PF00216 Bacterial DNA-binding protein DOE60_RS08600 PF04222 Protein of unknown function (DUF416) DOE60_RS08605 PF04493 Endonuclease V DOE60_RS08610 PF01208 Uroporphyrinogen decarboxylase (URO-D) DOE60_RS08615 PF09297 NADH pyrophosphatase zinc ribbon domain DOE60_RS08615 PF00293 NUDIX domain DOE60_RS08620 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DOE60_RS08625 PF13667 ThiC-associated domain DOE60_RS08625 PF01964 Radical SAM ThiC family DOE60_RS08630 PF02581 Thiamine monophosphate synthase DOE60_RS08635 PF00899 ThiF family DOE60_RS08640 PF02597 ThiS family DOE60_RS08645 PF05690 Thiazole biosynthesis protein ThiG DOE60_RS08650 PF04055 Radical SAM superfamily DOE60_RS08650 PF06968 Biotin and Thiamin Synthesis associated domain DOE60_RS08660 PF04997 RNA polymerase Rpb1, domain 1 DOE60_RS08660 PF00623 RNA polymerase Rpb1, domain 2 DOE60_RS08660 PF04983 RNA polymerase Rpb1, domain 3 DOE60_RS08660 PF05000 RNA polymerase Rpb1, domain 4 DOE60_RS08660 PF04998 RNA polymerase Rpb1, domain 5 DOE60_RS08665 PF04563 RNA polymerase beta subunit DOE60_RS08665 PF04560 RNA polymerase Rpb2, domain 7 DOE60_RS08665 PF04561 RNA polymerase Rpb2, domain 2 DOE60_RS08665 PF04565 RNA polymerase Rpb2, domain 3 DOE60_RS08665 PF00562 RNA polymerase Rpb2, domain 6 DOE60_RS08665 PF10385 RNA polymerase beta subunit external 1 domain DOE60_RS08670 PF16320 Ribosomal protein L7/L12 dimerisation domain DOE60_RS08670 PF00542 Ribosomal protein L7/L12 C-terminal domain DOE60_RS08675 PF00466 Ribosomal protein L10 DOE60_RS08690 PF00687 Ribosomal protein L1p/L10e family DOE60_RS08695 PF00298 Ribosomal protein L11, RNA binding domain DOE60_RS08695 PF03946 Ribosomal protein L11, N-terminal domain DOE60_RS08700 PF02357 Transcription termination factor nusG DOE60_RS08700 PF00467 KOW motif DOE60_RS08705 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DOE60_RS08745 PF00485 Phosphoribulokinase / Uridine kinase family DOE60_RS08750 PF03099 Biotin/lipoate A/B protein ligase family DOE60_RS08750 PF08279 HTH domain DOE60_RS08750 PF02237 Biotin protein ligase C terminal domain DOE60_RS08755 PF01565 FAD binding domain DOE60_RS08755 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DOE60_RS08785 PF01177 Asp/Glu/Hydantoin racemase DOE60_RS08790 PF00593 TonB dependent receptor DOE60_RS08790 PF07715 TonB-dependent Receptor Plug Domain DOE60_RS08795 PF05958 tRNA (Uracil-5-)-methyltransferase DOE60_RS08800 PF07226 Protein of unknown function (DUF1422) DOE60_RS08805 PF00440 Bacterial regulatory proteins, tetR family DOE60_RS08815 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS08815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE60_RS08820 PF03466 LysR substrate binding domain DOE60_RS08820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS08830 PF00206 Lyase DOE60_RS08830 PF14698 Argininosuccinate lyase C-terminal DOE60_RS08835 PF00696 Amino acid kinase family DOE60_RS08840 PF02774 Semialdehyde dehydrogenase, dimerisation domain DOE60_RS08840 PF01118 Semialdehyde dehydrogenase, NAD binding domain DOE60_RS08845 PF01546 Peptidase family M20/M25/M40 DOE60_RS08845 PF07687 Peptidase dimerisation domain DOE60_RS08850 PF00311 Phosphoenolpyruvate carboxylase DOE60_RS08855 PF00884 Sulfatase DOE60_RS08860 PF12833 Helix-turn-helix domain DOE60_RS08865 PF00923 Transaldolase/Fructose-6-phosphate aldolase DOE60_RS08870 PF00465 Iron-containing alcohol dehydrogenase DOE60_RS08875 PF06940 Domain of unknown function (DUF1287) DOE60_RS08880 PF00141 Peroxidase DOE60_RS08885 PF02219 Methylenetetrahydrofolate reductase DOE60_RS08890 PF00149 Calcineurin-like phosphoesterase DOE60_RS08890 PF17936 Bacterial Ig domain DOE60_RS08890 PF02872 5'-nucleotidase, C-terminal domain DOE60_RS08905 PF00742 Homoserine dehydrogenase DOE60_RS08905 PF00696 Amino acid kinase family DOE60_RS08905 PF03447 Homoserine dehydrogenase, NAD binding domain DOE60_RS08910 PF01053 Cys/Met metabolism PLP-dependent enzyme DOE60_RS08915 PF01340 Met Apo-repressor, MetJ DOE60_RS08920 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family DOE60_RS08945 PF14220 Domain of unknown function (DUF4329) DOE60_RS08945 PF03527 RHS protein DOE60_RS08945 PF05593 RHS Repeat DOE60_RS08955 PF01197 Ribosomal protein L31 DOE60_RS08960 PF00270 DEAD/DEAH box helicase DOE60_RS08960 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DOE60_RS08960 PF18074 Primosomal protein N C-terminal domain DOE60_RS08960 PF17764 3′ DNA-binding domain (3′BD) DOE60_RS08960 PF00271 Helicase conserved C-terminal domain DOE60_RS08965 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS08970 PF05036 Sporulation related domain DOE60_RS08975 PF00227 Proteasome subunit DOE60_RS08980 PF00004 ATPase family associated with various cellular activities (AAA) DOE60_RS08980 PF07724 AAA domain (Cdc48 subfamily) DOE60_RS08980 PF10431 C-terminal, D2-small domain, of ClpB protein DOE60_RS08985 PF01040 UbiA prenyltransferase family DOE60_RS08990 PF03737 Aldolase/RraA DOE60_RS08995 PF06005 Cell division protein ZapB DOE60_RS09000 PF00230 Major intrinsic protein DOE60_RS09005 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE60_RS09005 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE60_RS09010 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DOE60_RS09015 PF00175 Oxidoreductase NAD-binding domain DOE60_RS09015 PF00970 Oxidoreductase FAD-binding domain DOE60_RS09020 PF05656 Protein of unknown function (DUF805) DOE60_RS09025 PF07305 Protein of unknown function (DUF1454) DOE60_RS09030 PF00121 Triosephosphate isomerase DOE60_RS09035 PF00939 Sodium:sulfate symporter transmembrane region DOE60_RS09045 PF02611 CDP-diacylglycerol pyrophosphatase DOE60_RS09055 PF00365 Phosphofructokinase DOE60_RS09060 PF01545 Cation efflux family DOE60_RS09060 PF16916 Dimerisation domain of Zinc Transporter DOE60_RS09065 PF07813 LTXXQ motif family protein DOE60_RS09070 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS09070 PF00072 Response regulator receiver domain DOE60_RS09075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS09075 PF00672 HAMP domain DOE60_RS09075 PF16527 Two-component sensor protein CpxA, periplasmic domain DOE60_RS09075 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS09080 PF03473 MOSC domain DOE60_RS09080 PF03475 3-alpha domain DOE60_RS09085 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DOE60_RS09085 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DOE60_RS09090 PF03480 Bacterial extracellular solute-binding protein, family 7 DOE60_RS09095 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DOE60_RS09105 PF06178 Oligogalacturonate-specific porin protein (KdgM) DOE60_RS09110 PF06379 L-rhamnose-proton symport protein (RhaT) DOE60_RS09115 PF12833 Helix-turn-helix domain DOE60_RS09115 PF02311 AraC-like ligand binding domain DOE60_RS09120 PF12833 Helix-turn-helix domain DOE60_RS09120 PF02311 AraC-like ligand binding domain DOE60_RS09130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE60_RS09130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE60_RS09135 PF06134 L-rhamnose isomerase (RhaA) DOE60_RS09140 PF00596 Class II Aldolase and Adducin N-terminal domain DOE60_RS09145 PF00465 Iron-containing alcohol dehydrogenase DOE60_RS09150 PF05336 L-rhamnose mutarotase DOE60_RS09160 PF03591 AzlC protein DOE60_RS09175 PF12889 Protein of unknown function (DUF3829) DOE60_RS09180 PF02634 FdhD/NarQ family DOE60_RS09190 PF13953 PapC C-terminal domain DOE60_RS09190 PF13954 PapC N-terminal domain DOE60_RS09190 PF00577 Outer membrane usher protein DOE60_RS09195 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS09205 PF00384 Molybdopterin oxidoreductase DOE60_RS09205 PF01568 Molydopterin dinucleotide binding domain DOE60_RS09205 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS09210 PF00384 Molybdopterin oxidoreductase DOE60_RS09210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS09210 PF01568 Molydopterin dinucleotide binding domain DOE60_RS09215 PF13247 4Fe-4S dicluster domain DOE60_RS09215 PF09163 Formate dehydrogenase N, transmembrane DOE60_RS09220 PF01292 Prokaryotic cytochrome b561 DOE60_RS09225 PF04216 Protein involved in formate dehydrogenase formation DOE60_RS09235 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system DOE60_RS09240 PF07859 alpha/beta hydrolase fold DOE60_RS09245 PF09500 Putative thioesterase (yiiD_Cterm) DOE60_RS09245 PF00583 Acetyltransferase (GNAT) family DOE60_RS09250 PF02580 D-Tyr-tRNA(Tyr) deacylase DOE60_RS09255 PF03631 Virulence factor BrkB DOE60_RS09260 PF13419 Haloacid dehalogenase-like hydrolase DOE60_RS09265 PF00455 DeoR C terminal sensor domain DOE60_RS09265 PF08220 DeoR-like helix-turn-helix domain DOE60_RS09270 PF00294 pfkB family carbohydrate kinase DOE60_RS09275 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DOE60_RS09275 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOE60_RS09280 PF01791 DeoC/LacD family aldolase DOE60_RS09290 PF01263 Aldose 1-epimerase DOE60_RS09295 PF01055 Glycosyl hydrolases family 31 DOE60_RS09310 PF06178 Oligogalacturonate-specific porin protein (KdgM) DOE60_RS09330 PF04055 Radical SAM superfamily DOE60_RS09345 PF00679 Elongation factor G C-terminus DOE60_RS09345 PF00009 Elongation factor Tu GTP binding domain DOE60_RS09345 PF03144 Elongation factor Tu domain 2 DOE60_RS09355 PF00120 Glutamine synthetase, catalytic domain DOE60_RS09355 PF03951 Glutamine synthetase, beta-Grasp domain DOE60_RS09360 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS09360 PF00989 PAS fold DOE60_RS09360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS09365 PF00158 Sigma-54 interaction domain DOE60_RS09365 PF00072 Response regulator receiver domain DOE60_RS09365 PF02954 Bacterial regulatory protein, Fis family DOE60_RS09375 PF06969 HemN C-terminal domain DOE60_RS09375 PF04055 Radical SAM superfamily DOE60_RS09380 PF04220 Der GTPase activator (YihI) DOE60_RS09390 PF01926 50S ribosome-binding GTPase DOE60_RS09395 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DOE60_RS09395 PF00476 DNA polymerase family A DOE60_RS09395 PF01612 3'-5' exonuclease DOE60_RS09395 PF01367 5'-3' exonuclease, C-terminal SAM fold DOE60_RS09405 PF01553 Acyltransferase DOE60_RS09410 PF01323 DSBA-like thioredoxin domain DOE60_RS09415 PF01636 Phosphotransferase enzyme family DOE60_RS09420 PF06288 Protein of unknown function (DUF1040) DOE60_RS09425 PF12804 MobA-like NTP transferase domain DOE60_RS09430 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DOE60_RS09460 PF12724 Flavodoxin domain DOE60_RS09465 PF02386 Cation transport protein DOE60_RS09470 PF09186 Domain of unknown function (DUF1949) DOE60_RS09470 PF01205 Uncharacterized protein family UPF0029 DOE60_RS09475 PF00557 Metallopeptidase family M24 DOE60_RS09480 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DOE60_RS09480 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DOE60_RS09480 PF00378 Enoyl-CoA hydratase/isomerase DOE60_RS09485 PF00108 Thiolase, N-terminal domain DOE60_RS09485 PF02803 Thiolase, C-terminal domain DOE60_RS09490 PF05935 Arylsulfotransferase (ASST) DOE60_RS09490 PF17425 Arylsulfotransferase Ig-like domain DOE60_RS09495 PF00970 Oxidoreductase FAD-binding domain DOE60_RS09495 PF00175 Oxidoreductase NAD-binding domain DOE60_RS09500 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DOE60_RS09505 PF02357 Transcription termination factor nusG DOE60_RS09510 PF01026 TatD related DNase DOE60_RS09515 PF00902 Sec-independent protein translocase protein (TatC) DOE60_RS09525 PF02416 mttA/Hcf106 family DOE60_RS09530 PF03109 ABC1 family DOE60_RS09535 PF02036 SCP-2 sterol transfer family DOE60_RS09540 PF01209 ubiE/COQ5 methyltransferase family DOE60_RS09545 PF02646 RmuC family DOE60_RS09550 PF01048 Phosphorylase superfamily DOE60_RS09555 PF01738 Dienelactone hydrolase family DOE60_RS09560 PF13186 Iron-sulfur cluster-binding domain DOE60_RS09560 PF04055 Radical SAM superfamily DOE60_RS09565 PF01717 Cobalamin-independent synthase, Catalytic domain DOE60_RS09565 PF08267 Cobalamin-independent synthase, N-terminal domain DOE60_RS09575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS09575 PF03466 LysR substrate binding domain DOE60_RS09580 PF00892 EamA-like transporter family DOE60_RS09590 PF12146 Serine aminopeptidase, S33 DOE60_RS09595 PF01810 LysE type translocator DOE60_RS09600 PF01810 LysE type translocator DOE60_RS09605 PF00270 DEAD/DEAH box helicase DOE60_RS09605 PF09382 RQC domain DOE60_RS09605 PF16124 RecQ zinc-binding DOE60_RS09605 PF00271 Helicase conserved C-terminal domain DOE60_RS09605 PF00570 HRDC domain DOE60_RS09610 PF02253 Phospholipase A1 DOE60_RS09615 PF03061 Thioesterase superfamily DOE60_RS09620 PF00892 EamA-like transporter family DOE60_RS09630 PF10947 Protein of unknown function (DUF2628) DOE60_RS09635 PF01544 CorA-like Mg2+ transporter protein DOE60_RS09645 PF13361 UvrD-like helicase C-terminal domain DOE60_RS09645 PF00580 UvrD/REP helicase N-terminal domain DOE60_RS09650 PF13419 Haloacid dehalogenase-like hydrolase DOE60_RS09655 PF02899 Phage integrase, N-terminal SAM-like domain DOE60_RS09655 PF00589 Phage integrase family DOE60_RS09660 PF04340 Protein of unknown function, DUF484 DOE60_RS09665 PF01678 Diaminopimelate epimerase DOE60_RS09670 PF13627 Prokaryotic lipoprotein-attachment site DOE60_RS09680 PF01491 Frataxin-like domain DOE60_RS09685 PF12633 Adenylate cyclase NT domain DOE60_RS09685 PF01295 Adenylate cyclase, class-I DOE60_RS09695 PF03900 Porphobilinogen deaminase, C-terminal domain DOE60_RS09695 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DOE60_RS09700 PF02602 Uroporphyrinogen-III synthase HemD DOE60_RS09705 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase DOE60_RS09710 PF07219 HemY protein N-terminus DOE60_RS09710 PF07719 Tetratricopeptide repeat DOE60_RS09735 PF00324 Amino acid permease DOE60_RS09740 PF03808 Glycosyl transferase WecB/TagA/CpsF family DOE60_RS09745 PF06899 WzyE protein, O-antigen assembly polymerase DOE60_RS09750 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 DOE60_RS09755 PF01943 Polysaccharide biosynthesis protein DOE60_RS09760 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DOE60_RS09770 PF00483 Nucleotidyl transferase DOE60_RS09775 PF16363 GDP-mannose 4,6 dehydratase DOE60_RS09780 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DOE60_RS09780 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOE60_RS09780 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOE60_RS09785 PF02350 UDP-N-acetylglucosamine 2-epimerase DOE60_RS09790 PF02706 Chain length determinant protein DOE60_RS09795 PF00953 Glycosyl transferase family 4 DOE60_RS09805 PF07498 Rho termination factor, N-terminal domain DOE60_RS09805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE60_RS09805 PF07497 Rho termination factor, RNA-binding domain DOE60_RS09815 PF00085 Thioredoxin DOE60_RS09820 PF00271 Helicase conserved C-terminal domain DOE60_RS09820 PF00270 DEAD/DEAH box helicase DOE60_RS09830 PF02541 Ppx/GppA phosphatase family DOE60_RS09835 PF00580 UvrD/REP helicase N-terminal domain DOE60_RS09835 PF13361 UvrD-like helicase C-terminal domain DOE60_RS09840 PF04973 Nicotinamide mononucleotide transporter DOE60_RS09860 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DOE60_RS09860 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DOE60_RS09865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS09865 PF03466 LysR substrate binding domain DOE60_RS09875 PF00291 Pyridoxal-phosphate dependent enzyme DOE60_RS09875 PF00585 C-terminal regulatory domain of Threonine dehydratase DOE60_RS09880 PF00920 Dehydratase family DOE60_RS09885 PF01063 Amino-transferase class IV DOE60_RS09895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE60_RS09895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE60_RS09895 PF00205 Thiamine pyrophosphate enzyme, central domain DOE60_RS09900 PF08046 IlvGEDA operon leader peptide DOE60_RS09905 PF13335 Magnesium chelatase, subunit ChlI C-terminal DOE60_RS09905 PF01078 Magnesium chelatase, subunit ChlI DOE60_RS09910 PF04219 Protein of unknown function, DUF DOE60_RS09915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS09915 PF03466 LysR substrate binding domain DOE60_RS09950 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS09950 PF07729 FCD domain DOE60_RS09955 PF07690 Major Facilitator Superfamily DOE60_RS09960 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS09965 PF00294 pfkB family carbohydrate kinase DOE60_RS09970 PF13407 Periplasmic binding protein domain DOE60_RS09975 PF02653 Branched-chain amino acid transport system / permease component DOE60_RS09980 PF00005 ABC transporter DOE60_RS09985 PF05025 RbsD / FucU transport protein family DOE60_RS09990 PF02705 K+ potassium transporter DOE60_RS10000 PF12592 Protein of unknown function (DUF3763) DOE60_RS10000 PF07728 AAA domain (dynein-related subfamily) DOE60_RS10000 PF17868 AAA lid domain DOE60_RS10010 PF03590 Aspartate-ammonia ligase DOE60_RS10015 PF01037 Lrp/AsnC ligand binding domain DOE60_RS10020 PF00258 Flavodoxin DOE60_RS10030 PF13932 GidA associated domain DOE60_RS10030 PF01134 Glucose inhibited division protein A DOE60_RS10035 PF02527 rRNA small subunit methyltransferase G DOE60_RS10040 PF03899 ATP synthase I chain DOE60_RS10045 PF00119 ATP synthase A chain DOE60_RS10050 PF00137 ATP synthase subunit C DOE60_RS10055 PF00430 ATP synthase B/B' CF(0) DOE60_RS10060 PF00213 ATP synthase delta (OSCP) subunit DOE60_RS10065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE60_RS10065 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOE60_RS10065 PF00306 ATP synthase alpha/beta chain, C terminal domain DOE60_RS10070 PF00231 ATP synthase DOE60_RS10075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE60_RS10075 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOE60_RS10080 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DOE60_RS10080 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DOE60_RS10095 PF00132 Bacterial transferase hexapeptide (six repeats) DOE60_RS10095 PF12804 MobA-like NTP transferase domain DOE60_RS10095 PF14602 Hexapeptide repeat of succinyl-transferase DOE60_RS10100 PF01380 SIS domain DOE60_RS10105 PF12849 PBP superfamily domain DOE60_RS10110 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS10115 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS10120 PF00005 ABC transporter DOE60_RS10125 PF01895 PhoU domain DOE60_RS10130 PF13419 Haloacid dehalogenase-like hydrolase DOE60_RS10135 PF00860 Permease family DOE60_RS10140 PF03358 NADPH-dependent FMN reductase DOE60_RS10150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS10150 PF03466 LysR substrate binding domain DOE60_RS10155 PF07690 Major Facilitator Superfamily DOE60_RS10160 PF01926 50S ribosome-binding GTPase DOE60_RS10160 PF12631 MnmE helical domain DOE60_RS10160 PF10396 GTP-binding protein TrmE N-terminus DOE60_RS10165 PF14849 YidC periplasmic domain DOE60_RS10165 PF02096 60Kd inner membrane protein DOE60_RS10170 PF01809 Putative membrane protein insertion efficiency factor DOE60_RS10175 PF00825 Ribonuclease P DOE60_RS10180 PF00468 Ribosomal protein L34 DOE60_RS10185 PF00308 Bacterial dnaA protein DOE60_RS10185 PF08299 Bacterial dnaA protein helix-turn-helix DOE60_RS10185 PF11638 DnaA N-terminal domain DOE60_RS10190 PF02767 DNA polymerase III beta subunit, central domain DOE60_RS10190 PF00712 DNA polymerase III beta subunit, N-terminal domain DOE60_RS10190 PF02768 DNA polymerase III beta subunit, C-terminal domain DOE60_RS10195 PF02463 RecF/RecN/SMC N terminal domain DOE60_RS10200 PF00204 DNA gyrase B DOE60_RS10200 PF01751 Toprim domain DOE60_RS10200 PF00986 DNA gyrase B subunit, carboxyl terminus DOE60_RS10200 PF18053 DNA gyrase B subunit insert domain DOE60_RS10200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS10210 PF01627 Hpt domain DOE60_RS10210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS10210 PF00672 HAMP domain DOE60_RS10210 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS10210 PF00072 Response regulator receiver domain DOE60_RS10215 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DOE60_RS10220 PF00072 Response regulator receiver domain DOE60_RS10220 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS10225 PF03264 NapC/NirT cytochrome c family, N-terminal region DOE60_RS10230 PF18364 Molybdopterin oxidoreductase N-terminal domain DOE60_RS10230 PF00384 Molybdopterin oxidoreductase DOE60_RS10230 PF01568 Molydopterin dinucleotide binding domain DOE60_RS10235 PF02613 Nitrate reductase delta subunit DOE60_RS10240 PF00034 Cytochrome c DOE60_RS10240 PF14376 Haem-binding domain DOE60_RS10240 PF03150 Di-haem cytochrome c peroxidase DOE60_RS10245 PF00005 ABC transporter DOE60_RS10250 PF03379 CcmB protein DOE60_RS10255 PF01578 Cytochrome C assembly protein DOE60_RS10260 PF04995 Heme exporter protein D (CcmD) DOE60_RS10280 PF08534 Redoxin DOE60_RS10285 PF03918 Cytochrome C biogenesis protein DOE60_RS10290 PF01494 FAD binding domain DOE60_RS10295 PF12566 Protein of unknown function (DUF3748) DOE60_RS10295 PF07676 WD40-like Beta Propeller Repeat DOE60_RS10300 PF07119 Protein of unknown function (DUF1375) DOE60_RS10310 PF00011 Hsp20/alpha crystallin family DOE60_RS10315 PF00011 Hsp20/alpha crystallin family DOE60_RS10320 PF02080 TrkA-C domain DOE60_RS10320 PF06826 Predicted Permease Membrane Region DOE60_RS10325 PF02656 Domain of unknown function (DUF202) DOE60_RS10330 PF02656 Domain of unknown function (DUF202) DOE60_RS10340 PF00291 Pyridoxal-phosphate dependent enzyme DOE60_RS10345 PF02447 GntP family permease DOE60_RS10350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS10350 PF03466 LysR substrate binding domain DOE60_RS10360 PF07690 Major Facilitator Superfamily DOE60_RS10365 PF07282 Putative transposase DNA-binding domain DOE60_RS10365 PF12323 Helix-turn-helix domain DOE60_RS10365 PF01385 Probable transposase DOE60_RS10375 PF13939 Toxin TisB, type I toxin-antitoxin system DOE60_RS10390 PF08049 IlvB leader peptide DOE60_RS10395 PF00205 Thiamine pyrophosphate enzyme, central domain DOE60_RS10395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE60_RS10395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE60_RS10400 PF01842 ACT domain DOE60_RS10405 PF00455 DeoR C terminal sensor domain DOE60_RS10405 PF08220 DeoR-like helix-turn-helix domain DOE60_RS10410 PF00294 pfkB family carbohydrate kinase DOE60_RS10425 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS10425 PF00072 Response regulator receiver domain DOE60_RS10430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS10430 PF05231 MASE1 DOE60_RS10430 PF07730 Histidine kinase DOE60_RS10435 PF07690 Major Facilitator Superfamily DOE60_RS10440 PF07690 Major Facilitator Superfamily DOE60_RS10465 PF06711 Protein of unknown function (DUF1198) DOE60_RS10480 PF07690 Major Facilitator Superfamily DOE60_RS10485 PF00232 Glycosyl hydrolase family 1 DOE60_RS10495 PF00158 Sigma-54 interaction domain DOE60_RS10495 PF00874 PRD domain DOE60_RS10505 PF03610 PTS system fructose IIA component DOE60_RS10505 PF03830 PTS system sorbose subfamily IIB component DOE60_RS10510 PF03609 PTS system sorbose-specific iic component DOE60_RS10515 PF03613 PTS system mannose/fructose/sorbose family IID component DOE60_RS10520 PF03841 L-seryl-tRNA selenium transferase DOE60_RS10525 PF07071 KDGP aldolase DOE60_RS10530 PF04754 Putative transposase, YhgA-like DOE60_RS10535 PF00892 EamA-like transporter family DOE60_RS10540 PF02308 MgtC family DOE60_RS10545 PF00690 Cation transporter/ATPase, N-terminus DOE60_RS10545 PF00689 Cation transporting ATPase, C-terminus DOE60_RS10560 PF00857 Isochorismatase family DOE60_RS10570 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS10580 PF03797 Autotransporter beta-domain DOE60_RS10585 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS10630 PF01055 Glycosyl hydrolases family 31 DOE60_RS10630 PF13802 Galactose mutarotase-like DOE60_RS10635 PF05170 AsmA family DOE60_RS10640 PF00860 Permease family DOE60_RS10645 PF03616 Sodium/glutamate symporter DOE60_RS10650 PF00270 DEAD/DEAH box helicase DOE60_RS10650 PF17191 RecG wedge domain DOE60_RS10650 PF00271 Helicase conserved C-terminal domain DOE60_RS10655 PF12105 SpoU, rRNA methylase, C-terminal DOE60_RS10655 PF00588 SpoU rRNA Methylase family DOE60_RS10660 PF02824 TGS domain DOE60_RS10660 PF04607 Region found in RelA / SpoT proteins DOE60_RS10660 PF13291 ACT domain DOE60_RS10665 PF01192 RNA polymerase Rpb6 DOE60_RS10670 PF00625 Guanylate kinase DOE60_RS10675 PF01653 NAD-dependent DNA ligase adenylation domain DOE60_RS10675 PF03120 NAD-dependent DNA ligase OB-fold domain DOE60_RS10680 PF03458 UPF0126 domain DOE60_RS10690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS10690 PF03466 LysR substrate binding domain DOE60_RS10695 PF08340 Domain of unknown function (DUF1732) DOE60_RS10695 PF03755 YicC-like family, N-terminal region DOE60_RS10705 PF03725 3' exoribonuclease family, domain 2 DOE60_RS10705 PF01138 3' exoribonuclease family, domain 1 DOE60_RS10710 PF00156 Phosphoribosyl transferase domain DOE60_RS10715 PF00440 Bacterial regulatory proteins, tetR family DOE60_RS10720 PF00692 dUTPase DOE60_RS10725 PF02441 Flavoprotein DOE60_RS10725 PF04127 DNA / pantothenate metabolism flavoprotein DOE60_RS10730 PF04002 RadC-like JAB domain DOE60_RS10735 PF00830 Ribosomal L28 family DOE60_RS10740 PF00471 Ribosomal protein L33 DOE60_RS10745 PF06827 Zinc finger found in FPG and IleRS DOE60_RS10745 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DOE60_RS10745 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DOE60_RS10750 PF01467 Cytidylyltransferase-like DOE60_RS10755 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DOE60_RS10760 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DOE60_RS10765 PF13439 Glycosyltransferase Family 4 DOE60_RS10765 PF00534 Glycosyl transferases group 1 DOE60_RS10780 PF00534 Glycosyl transferases group 1 DOE60_RS10780 PF13439 Glycosyltransferase Family 4 DOE60_RS10785 PF01501 Glycosyl transferase family 8 DOE60_RS10785 PF08437 Glycosyl transferase family 8 C-terminal DOE60_RS10790 PF08437 Glycosyl transferase family 8 C-terminal DOE60_RS10790 PF01501 Glycosyl transferase family 8 DOE60_RS10795 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) DOE60_RS10805 PF00534 Glycosyl transferases group 1 DOE60_RS10810 PF04932 O-Antigen ligase DOE60_RS10815 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DOE60_RS10820 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DOE60_RS10825 PF01370 NAD dependent epimerase/dehydratase family DOE60_RS10830 PF00155 Aminotransferase class I and II DOE60_RS10835 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS10835 PF00107 Zinc-binding dehydrogenase DOE60_RS10845 PF04748 Divergent polysaccharide deacetylase DOE60_RS10850 PF01551 Peptidase family M23 DOE60_RS10855 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DOE60_RS10855 PF01676 Metalloenzyme superfamily DOE60_RS10860 PF00581 Rhodanese-like domain DOE60_RS10865 PF00462 Glutaredoxin DOE60_RS10870 PF02556 Preprotein translocase subunit SecB DOE60_RS10875 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DOE60_RS10875 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DOE60_RS10880 PF06426 Serine acetyltransferase, N-terminal DOE60_RS10880 PF00132 Bacterial transferase hexapeptide (six repeats) DOE60_RS10885 PF00588 SpoU rRNA Methylase family DOE60_RS10890 PF01070 FMN-dependent dehydrogenase DOE60_RS10895 PF07729 FCD domain DOE60_RS10895 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS10900 PF02652 L-lactate permease DOE60_RS10905 PF10928 Protein of unknown function (DUF2810) DOE60_RS10915 PF05068 Mannitol repressor DOE60_RS10920 PF01232 Mannitol dehydrogenase Rossmann domain DOE60_RS10920 PF08125 Mannitol dehydrogenase C-terminal domain DOE60_RS10925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE60_RS10925 PF02378 Phosphotransferase system, EIIC DOE60_RS10925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE60_RS10930 PF13417 Glutathione S-transferase, N-terminal domain DOE60_RS10930 PF00043 Glutathione S-transferase, C-terminal domain DOE60_RS10935 PF03841 L-seryl-tRNA selenium transferase DOE60_RS10935 PF12390 Selenocysteine synthase N terminal DOE60_RS10940 PF09107 Elongation factor SelB, winged helix DOE60_RS10940 PF09106 Elongation factor SelB, winged helix DOE60_RS10940 PF03144 Elongation factor Tu domain 2 DOE60_RS10940 PF00009 Elongation factor Tu GTP binding domain DOE60_RS10945 PF00465 Iron-containing alcohol dehydrogenase DOE60_RS10950 PF00480 ROK family DOE60_RS10955 PF00171 Aldehyde dehydrogenase family DOE60_RS10960 PF00596 Class II Aldolase and Adducin N-terminal domain DOE60_RS10965 PF01261 Xylose isomerase-like TIM barrel DOE60_RS10970 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DOE60_RS10975 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE60_RS10975 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE60_RS10980 PF07690 Major Facilitator Superfamily DOE60_RS10985 PF16154 Domain of unknown function (DUF4862) DOE60_RS10990 PF04074 YhcH/YjgK/YiaL DOE60_RS10995 PF02615 Malate/L-lactate dehydrogenase DOE60_RS11000 PF01614 Bacterial transcriptional regulator DOE60_RS11000 PF09339 IclR helix-turn-helix domain DOE60_RS11005 PF13247 4Fe-4S dicluster domain DOE60_RS11010 PF00155 Aminotransferase class I and II DOE60_RS11015 PF00128 Alpha amylase, catalytic domain DOE60_RS11020 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DOE60_RS11025 PF12833 Helix-turn-helix domain DOE60_RS11040 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE60_RS11040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE60_RS11045 PF05360 yiaA/B two helix domain DOE60_RS11050 PF05360 yiaA/B two helix domain DOE60_RS11055 PF01757 Acyltransferase family DOE60_RS11065 PF13983 YsaB-like lipoprotein DOE60_RS11070 PF02091 Glycyl-tRNA synthetase alpha subunit DOE60_RS11075 PF02092 Glycyl-tRNA synthetase beta subunit DOE60_RS11075 PF05746 DALR anticodon binding domain DOE60_RS11080 PF01848 Hok/gef family DOE60_RS11090 PF00313 'Cold-shock' DNA-binding domain DOE60_RS11095 PF01381 Helix-turn-helix DOE60_RS11100 PF11254 Protein of unknown function (DUF3053) DOE60_RS11110 PF13488 Glycine zipper DOE60_RS11110 PF00691 OmpA family DOE60_RS11115 PF00384 Molybdopterin oxidoreductase DOE60_RS11115 PF18364 Molybdopterin oxidoreductase N-terminal domain DOE60_RS11115 PF01568 Molydopterin dinucleotide binding domain DOE60_RS11120 PF00583 Acetyltransferase (GNAT) family DOE60_RS11125 PF03352 Methyladenine glycosylase DOE60_RS11130 PF03797 Autotransporter beta-domain DOE60_RS11135 PF08019 Phosphoethanolamine transferase EptA/EptB DOE60_RS11135 PF00884 Sulfatase DOE60_RS11160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE60_RS11165 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS11170 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE60_RS11170 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS11175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE60_RS11175 PF00005 ABC transporter DOE60_RS11180 PF00005 ABC transporter DOE60_RS11180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE60_RS11185 PF03222 Tryptophan/tyrosine permease family DOE60_RS11200 PF13940 Toxin Ldr, type I toxin-antitoxin system DOE60_RS11205 PF11658 Cellulose biosynthesis protein BcsG DOE60_RS11210 PF11120 Cellulose biosynthesis protein BcsF DOE60_RS11215 PF10995 Cellulose biosynthesis GIL DOE60_RS11220 PF10945 Cellulose biosynthesis protein BcsR DOE60_RS11225 PF06564 Cellulose biosynthesis protein BcsQ DOE60_RS11230 PF00535 Glycosyl transferase family 2 DOE60_RS11230 PF07238 PilZ domain DOE60_RS11230 PF03552 Cellulose synthase DOE60_RS11235 PF03170 Bacterial cellulose synthase subunit DOE60_RS11240 PF01270 Glycosyl hydrolases family 8 DOE60_RS11245 PF13176 Tetratricopeptide repeat DOE60_RS11245 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) DOE60_RS11255 PF00990 Diguanylate cyclase, GGDEF domain DOE60_RS11255 PF00672 HAMP domain DOE60_RS11255 PF17154 Gammaproteobacterial periplasmic sensor domain DOE60_RS11255 PF00563 EAL domain DOE60_RS11260 PF00375 Sodium:dicarboxylate symporter family DOE60_RS11265 PF05193 Peptidase M16 inactive domain DOE60_RS11265 PF00675 Insulinase (Peptidase family M16) DOE60_RS11270 PF00294 pfkB family carbohydrate kinase DOE60_RS11275 PF00563 EAL domain DOE60_RS11280 PF05170 AsmA family DOE60_RS11285 PF00083 Sugar (and other) transporter DOE60_RS11285 PF07690 Major Facilitator Superfamily DOE60_RS11295 PF03631 Virulence factor BrkB DOE60_RS11300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS11300 PF03466 LysR substrate binding domain DOE60_RS11305 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS11320 PF01204 Trehalase DOE60_RS11325 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS11325 PF07702 UTRA domain DOE60_RS11330 PF01380 SIS domain DOE60_RS11335 PF00294 pfkB family carbohydrate kinase DOE60_RS11340 PF03605 Anaerobic c4-dicarboxylate membrane transporter DOE60_RS11345 PF00710 Asparaginase, N-terminal DOE60_RS11345 PF17763 Glutaminase/Asparaginase C-terminal domain DOE60_RS11350 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS11350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE60_RS11355 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DOE60_RS11360 PF01569 PAP2 superfamily DOE60_RS11365 PF01432 Peptidase family M3 DOE60_RS11370 PF04445 Putative SAM-dependent methyltransferase DOE60_RS11375 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS11380 PF02082 Transcriptional regulator DOE60_RS11385 PF00854 POT family DOE60_RS11390 PF00582 Universal stress protein family DOE60_RS11395 PF10625 Universal stress protein B (UspB) DOE60_RS11400 PF01384 Phosphate transporter family DOE60_RS11410 PF13533 Biotin-lipoyl like DOE60_RS11415 PF00005 ABC transporter DOE60_RS11425 PF01402 Ribbon-helix-helix protein, copG family DOE60_RS11425 PF08753 NikR C terminal nickel binding domain DOE60_RS11430 PF01648 4'-phosphopantetheinyl transferase superfamily DOE60_RS11435 PF01594 AI-2E family transporter DOE60_RS11440 PF07690 Major Facilitator Superfamily DOE60_RS11445 PF08786 DcrB DOE60_RS11450 PF02592 Putative vitamin uptake transporter DOE60_RS11455 PF01206 Sulfurtransferase TusA DOE60_RS11460 PF02203 Tar ligand binding domain homologue DOE60_RS11460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE60_RS11460 PF00672 HAMP domain DOE60_RS11465 PF00403 Heavy-metal-associated domain DOE60_RS11470 PF07947 YhhN family DOE60_RS11475 PF10694 Protein of unknown function (DUF2500) DOE60_RS11480 PF06611 Protein of unknown function (DUF1145) DOE60_RS11490 PF00448 SRP54-type protein, GTPase domain DOE60_RS11490 PF02881 SRP54-type protein, helical bundle domain DOE60_RS11495 PF00005 ABC transporter DOE60_RS11500 PF18075 FtsX extracellular domain DOE60_RS11500 PF02687 FtsX-like permease family DOE60_RS11505 PF04542 Sigma-70 region 2 DOE60_RS11505 PF04545 Sigma-70, region 4 DOE60_RS11510 PF13458 Periplasmic binding protein DOE60_RS11520 PF04011 LemA family DOE60_RS11525 PF12568 Acetyltransferase (GNAT) domain, PanZ DOE60_RS11530 PF13458 Periplasmic binding protein DOE60_RS11535 PF02653 Branched-chain amino acid transport system / permease component DOE60_RS11540 PF11862 Domain of unknown function (DUF3382) DOE60_RS11540 PF02653 Branched-chain amino acid transport system / permease component DOE60_RS11545 PF12399 Branched-chain amino acid ATP-binding cassette transporter DOE60_RS11545 PF00005 ABC transporter DOE60_RS11550 PF00005 ABC transporter DOE60_RS11560 PF13416 Bacterial extracellular solute-binding protein DOE60_RS11565 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS11570 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS11575 PF17912 MalK OB fold domain DOE60_RS11575 PF00005 ABC transporter DOE60_RS11580 PF03009 Glycerophosphoryl diester phosphodiesterase family DOE60_RS11585 PF10956 Protein of unknown function (DUF2756) DOE60_RS11600 PF15567 Immunity protein 35 DOE60_RS11605 PF05638 Type VI secretion system effector, Hcp DOE60_RS11610 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE60_RS11610 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE60_RS11615 PF02678 Pirin DOE60_RS11615 PF17954 Quercetinase C-terminal cupin domain DOE60_RS11620 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS11620 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DOE60_RS11625 PF01202 Shikimate kinase DOE60_RS11630 PF02447 GntP family permease DOE60_RS11640 PF01118 Semialdehyde dehydrogenase, NAD binding domain DOE60_RS11640 PF02774 Semialdehyde dehydrogenase, dimerisation domain DOE60_RS11645 PF00128 Alpha amylase, catalytic domain DOE60_RS11645 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOE60_RS11645 PF02806 Alpha amylase, C-terminal all-beta domain DOE60_RS11650 PF18390 Glycogen debranching enzyme C-terminal domain DOE60_RS11650 PF00128 Alpha amylase, catalytic domain DOE60_RS11650 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOE60_RS11655 PF00483 Nucleotidyl transferase DOE60_RS11660 PF00534 Glycosyl transferases group 1 DOE60_RS11660 PF08323 Starch synthase catalytic domain DOE60_RS11665 PF00343 Carbohydrate phosphorylase DOE60_RS11670 PF01266 FAD dependent oxidoreductase DOE60_RS11670 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DOE60_RS11675 PF00581 Rhodanese-like domain DOE60_RS11680 PF01694 Rhomboid family DOE60_RS11680 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease DOE60_RS11685 PF08220 DeoR-like helix-turn-helix domain DOE60_RS11685 PF00455 DeoR C terminal sensor domain DOE60_RS11690 PF06956 Regulator of RNA terminal phosphate cyclase DOE60_RS11690 PF00158 Sigma-54 interaction domain DOE60_RS11695 PF01139 tRNA-splicing ligase RtcB DOE60_RS11700 PF01137 RNA 3'-terminal phosphate cyclase DOE60_RS11700 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain DOE60_RS11705 PF17874 MalT-like TPR region DOE60_RS11705 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS11720 PF00343 Carbohydrate phosphorylase DOE60_RS11725 PF02446 4-alpha-glucanotransferase DOE60_RS11730 PF02447 GntP family permease DOE60_RS11735 PF01106 NifU-like domain DOE60_RS11735 PF01521 Iron-sulphur cluster biosynthesis DOE60_RS11740 PF00156 Phosphoribosyl transferase domain DOE60_RS11745 PF00561 alpha/beta hydrolase fold DOE60_RS11750 PF04754 Putative transposase, YhgA-like DOE60_RS11755 PF09012 FeoC like transcriptional regulator DOE60_RS11760 PF02421 Ferrous iron transport protein B DOE60_RS11760 PF07670 Nucleoside recognition DOE60_RS11760 PF17910 FeoB cytosolic helical domain DOE60_RS11760 PF07664 Ferrous iron transport protein B C terminus DOE60_RS11765 PF04023 FeoA domain DOE60_RS11775 PF00575 S1 RNA binding domain DOE60_RS11775 PF17674 HHH domain DOE60_RS11775 PF16921 Tex protein YqgF-like domain DOE60_RS11775 PF09371 Tex-like protein N-terminal domain DOE60_RS11780 PF03449 Transcription elongation factor, N-terminal DOE60_RS11780 PF01272 Transcription elongation factor, GreA/GreB, C-term DOE60_RS11785 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS11785 PF00072 Response regulator receiver domain DOE60_RS11790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS11790 PF00672 HAMP domain DOE60_RS11790 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS11795 PF01293 Phosphoenolpyruvate carboxykinase DOE60_RS11800 PF13687 Domain of unknown function (DUF4153) DOE60_RS11805 PF01430 Hsp33 protein DOE60_RS11810 PF01479 S4 domain DOE60_RS11815 PF13419 Haloacid dehalogenase-like hydrolase DOE60_RS11820 PF07095 Intracellular growth attenuator protein IgaA DOE60_RS11825 PF00293 NUDIX domain DOE60_RS11830 PF17092 Penicillin-binding protein OB-like domain DOE60_RS11830 PF00912 Transglycosylase DOE60_RS11830 PF00905 Penicillin binding protein transpeptidase domain DOE60_RS11840 PF05137 Fimbrial assembly protein (PilN) DOE60_RS11850 PF10748 DNA utilization proteins HofP DOE60_RS11855 PF03958 Bacterial type II/III secretion system short domain DOE60_RS11855 PF00263 Bacterial type II and III secretion system protein DOE60_RS11865 PF01202 Shikimate kinase DOE60_RS11870 PF01761 3-dehydroquinate synthase DOE60_RS11875 PF05036 Sporulation related domain DOE60_RS11880 PF02086 D12 class N6 adenine-specific DNA methyltransferase DOE60_RS11885 PF00834 Ribulose-phosphate 3 epimerase family DOE60_RS11890 PF13419 Haloacid dehalogenase-like hydrolase DOE60_RS11895 PF00579 tRNA synthetases class I (W and Y) DOE60_RS11900 PF13978 Protein of unknown function (DUF4223) DOE60_RS11910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE60_RS11910 PF14824 Sirohaem biosynthesis protein central DOE60_RS11910 PF10414 Sirohaem synthase dimerisation region DOE60_RS11915 PF01226 Formate/nitrite transporter DOE60_RS11920 PF13806 Rieske-like [2Fe-2S] domain DOE60_RS11925 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DOE60_RS11925 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DOE60_RS11925 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS11925 PF18267 Rubredoxin NAD+ reductase C-terminal domain DOE60_RS11925 PF04324 BFD-like [2Fe-2S] binding domain DOE60_RS11930 PF07690 Major Facilitator Superfamily DOE60_RS11935 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DOE60_RS11940 PF10832 Protein of unknown function (DUF2559) DOE60_RS11945 PF02661 Fic/DOC family DOE60_RS11950 PF00117 Glutamine amidotransferase class-I DOE60_RS11955 PF00202 Aminotransferase class-III DOE60_RS11960 PF12805 FUSC-like inner membrane protein yccS DOE60_RS11965 PF00027 Cyclic nucleotide-binding domain DOE60_RS11965 PF13545 Crp-like helix-turn-helix domain DOE60_RS11970 PF02566 OsmC-like protein DOE60_RS11975 PF00485 Phosphoribulokinase / Uridine kinase family DOE60_RS11980 PF06794 Uncharacterised protein family (UPF0270) DOE60_RS11985 PF00561 alpha/beta hydrolase fold DOE60_RS11990 PF08803 Putative mono-oxygenase ydhR DOE60_RS11995 PF16957 Malonate decarboxylase, alpha subunit, transporter DOE60_RS12000 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DOE60_RS12005 PF06857 Malonate decarboxylase delta subunit (MdcD) DOE60_RS12010 PF01039 Carboxyl transferase domain DOE60_RS12020 PF03547 Membrane transport protein DOE60_RS12025 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DOE60_RS12030 PF00698 Acyl transferase domain DOE60_RS12035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS12035 PF03466 LysR substrate binding domain DOE60_RS12040 PF12848 ABC transporter DOE60_RS12040 PF00005 ABC transporter DOE60_RS12045 PF02525 Flavodoxin-like fold DOE60_RS12050 PF02254 TrkA-N domain DOE60_RS12050 PF00999 Sodium/hydrogen exchanger family DOE60_RS12055 PF09526 Probable metal-binding protein (DUF2387) DOE60_RS12060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOE60_RS12070 PF04102 SlyX DOE60_RS12075 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DOE60_RS12075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOE60_RS12080 PF08348 YheO-like PAS domain DOE60_RS12080 PF13309 HTH domain DOE60_RS12085 PF02635 DsrE/DsrF-like family DOE60_RS12090 PF02635 DsrE/DsrF-like family DOE60_RS12095 PF04077 DsrH like protein DOE60_RS12100 PF00164 Ribosomal protein S12/S23 DOE60_RS12105 PF00177 Ribosomal protein S7p/S5e DOE60_RS12110 PF03144 Elongation factor Tu domain 2 DOE60_RS12110 PF00009 Elongation factor Tu GTP binding domain DOE60_RS12110 PF03764 Elongation factor G, domain IV DOE60_RS12110 PF14492 Elongation Factor G, domain II DOE60_RS12110 PF00679 Elongation factor G C-terminus DOE60_RS12115 PF00009 Elongation factor Tu GTP binding domain DOE60_RS12115 PF03144 Elongation factor Tu domain 2 DOE60_RS12115 PF03143 Elongation factor Tu C-terminal domain DOE60_RS12130 PF04324 BFD-like [2Fe-2S] binding domain DOE60_RS12135 PF00210 Ferritin-like domain DOE60_RS12140 PF01478 Type IV leader peptidase family DOE60_RS12150 PF00338 Ribosomal protein S10p/S20e DOE60_RS12155 PF00297 Ribosomal protein L3 DOE60_RS12160 PF00573 Ribosomal protein L4/L1 family DOE60_RS12165 PF00276 Ribosomal protein L23 DOE60_RS12170 PF03947 Ribosomal Proteins L2, C-terminal domain DOE60_RS12170 PF00181 Ribosomal Proteins L2, RNA binding domain DOE60_RS12175 PF00203 Ribosomal protein S19 DOE60_RS12180 PF00237 Ribosomal protein L22p/L17e DOE60_RS12185 PF07650 KH domain DOE60_RS12185 PF00189 Ribosomal protein S3, C-terminal domain DOE60_RS12190 PF00252 Ribosomal protein L16p/L10e DOE60_RS12195 PF00831 Ribosomal L29 protein DOE60_RS12200 PF00366 Ribosomal protein S17 DOE60_RS12205 PF00238 Ribosomal protein L14p/L23e DOE60_RS12210 PF00467 KOW motif DOE60_RS12210 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DOE60_RS12215 PF00673 ribosomal L5P family C-terminus DOE60_RS12215 PF00281 Ribosomal protein L5 DOE60_RS12220 PF00253 Ribosomal protein S14p/S29e DOE60_RS12225 PF00410 Ribosomal protein S8 DOE60_RS12230 PF00347 Ribosomal protein L6 DOE60_RS12235 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DOE60_RS12240 PF03719 Ribosomal protein S5, C-terminal domain DOE60_RS12240 PF00333 Ribosomal protein S5, N-terminal domain DOE60_RS12245 PF00327 Ribosomal protein L30p/L7e DOE60_RS12250 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DOE60_RS12255 PF00344 SecY translocase DOE60_RS12260 PF00444 Ribosomal protein L36 DOE60_RS12265 PF00416 Ribosomal protein S13/S18 DOE60_RS12270 PF00411 Ribosomal protein S11 DOE60_RS12275 PF00163 Ribosomal protein S4/S9 N-terminal domain DOE60_RS12275 PF01479 S4 domain DOE60_RS12280 PF01000 RNA polymerase Rpb3/RpoA insert domain DOE60_RS12280 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DOE60_RS12280 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DOE60_RS12285 PF01196 Ribosomal protein L17 DOE60_RS12290 PF09350 Domain of unknown function (DUF1992) DOE60_RS12295 PF13411 MerR HTH family regulatory protein DOE60_RS12300 PF03889 Alternative ribosome-rescue factor A DOE60_RS12305 PF01741 Large-conductance mechanosensitive channel, MscL DOE60_RS12310 PF02254 TrkA-N domain DOE60_RS12310 PF02080 TrkA-C domain DOE60_RS12315 PF01029 NusB family DOE60_RS12315 PF01189 16S rRNA methyltransferase RsmB/F DOE60_RS12320 PF00551 Formyl transferase DOE60_RS12320 PF02911 Formyl transferase, C-terminal domain DOE60_RS12325 PF01327 Polypeptide deformylase DOE60_RS12330 PF17782 DprA winged helix domain DOE60_RS12330 PF02481 DNA recombination-mediator protein A DOE60_RS12335 PF04361 Protein of unknown function (DUF494) DOE60_RS12340 PF01396 Topoisomerase DNA binding C4 zinc finger DOE60_RS12345 PF01300 Telomere recombination DOE60_RS12350 PF08501 Shikimate dehydrogenase substrate binding domain DOE60_RS12350 PF01488 Shikimate / quinate 5-dehydrogenase DOE60_RS12350 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DOE60_RS12355 PF07369 Protein of unknown function (DUF1488) DOE60_RS12360 PF00132 Bacterial transferase hexapeptide (six repeats) DOE60_RS12400 PF00873 AcrB/AcrD/AcrF family DOE60_RS12405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE60_RS12405 PF00529 HlyD membrane-fusion protein of T1SS DOE60_RS12410 PF08361 MAATS-type transcriptional repressor, C-terminal region DOE60_RS12410 PF00440 Bacterial regulatory proteins, tetR family DOE60_RS12415 PF03707 Bacterial signalling protein N terminal repeat DOE60_RS12415 PF00563 EAL domain DOE60_RS12415 PF00990 Diguanylate cyclase, GGDEF domain DOE60_RS12420 PF10831 Protein of unknown function (DUF2556) DOE60_RS12425 PF01555 DNA methylase DOE60_RS12430 PF02954 Bacterial regulatory protein, Fis family DOE60_RS12435 PF01207 Dihydrouridine synthase (Dus) DOE60_RS12450 PF00474 Sodium:solute symporter family DOE60_RS12455 PF06196 Protein of unknown function (DUF997) DOE60_RS12460 PF02785 Biotin carboxylase C-terminal domain DOE60_RS12460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOE60_RS12460 PF00289 Biotin carboxylase, N-terminal domain DOE60_RS12465 PF00364 Biotin-requiring enzyme DOE60_RS12470 PF01794 Ferric reductase like transmembrane component DOE60_RS12475 PF00174 Oxidoreductase molybdopterin binding domain DOE60_RS12480 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS12480 PF00107 Zinc-binding dehydrogenase DOE60_RS12485 PF17157 Gammaproteobacterial periplasmic sensor domain DOE60_RS12485 PF00563 EAL domain DOE60_RS12485 PF00990 Diguanylate cyclase, GGDEF domain DOE60_RS12505 PF04085 rod shape-determining protein MreC DOE60_RS12510 PF04093 rod shape-determining protein MreD DOE60_RS12515 PF02545 Maf-like protein DOE60_RS12520 PF00575 S1 RNA binding domain DOE60_RS12520 PF10150 Ribonuclease E/G family DOE60_RS12525 PF13502 AsmA-like C-terminal region DOE60_RS12525 PF13116 Protein of unknown function DOE60_RS12530 PF01523 Putative modulator of DNA gyrase DOE60_RS12540 PF07869 Protein of unknown function (DUF1656) DOE60_RS12545 PF13533 Biotin-lipoyl like DOE60_RS12550 PF04632 Fusaric acid resistance protein family DOE60_RS12555 PF01337 Barstar (barnase inhibitor) DOE60_RS12560 PF07338 Protein of unknown function (DUF1471) DOE60_RS12565 PF07338 Protein of unknown function (DUF1471) DOE60_RS12570 PF01316 Arginine repressor, DNA binding domain DOE60_RS12570 PF02863 Arginine repressor, C-terminal domain DOE60_RS12575 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DOE60_RS12575 PF00056 lactate/malate dehydrogenase, NAD binding domain DOE60_RS12580 PF13180 PDZ domain DOE60_RS12585 PF13180 PDZ domain DOE60_RS12585 PF00595 PDZ domain DOE60_RS12590 PF06295 Protein of unknown function (DUF1043) DOE60_RS12595 PF03969 AFG1-like ATPase DOE60_RS12600 PF00572 Ribosomal protein L13 DOE60_RS12605 PF00380 Ribosomal protein S9/S16 DOE60_RS12615 PF02798 Glutathione S-transferase, N-terminal domain DOE60_RS12615 PF00043 Glutathione S-transferase, C-terminal domain DOE60_RS12620 PF04386 Stringent starvation protein B DOE60_RS12625 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS12625 PF07729 FCD domain DOE60_RS12630 PF00701 Dihydrodipicolinate synthetase family DOE60_RS12635 PF07690 Major Facilitator Superfamily DOE60_RS12640 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DOE60_RS12645 PF00480 ROK family DOE60_RS12650 PF04074 YhcH/YjgK/YiaL DOE60_RS12660 PF00577 Outer membrane usher protein DOE60_RS12660 PF13954 PapC N-terminal domain DOE60_RS12660 PF13953 PapC C-terminal domain DOE60_RS12665 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS12665 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE60_RS12670 PF00419 Fimbrial protein DOE60_RS12675 PF00419 Fimbrial protein DOE60_RS12680 PF00419 Fimbrial protein DOE60_RS12685 PF11245 Protein of unknown function (DUF2544) DOE60_RS12690 PF07969 Amidohydrolase family DOE60_RS12695 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DOE60_RS12700 PF06250 YhcG PDDEXK nuclease domain DOE60_RS12700 PF17761 DUF1016 N-terminal domain DOE60_RS12705 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DOE60_RS12705 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS12710 PF04898 Glutamate synthase central domain DOE60_RS12710 PF01645 Conserved region in glutamate synthase DOE60_RS12710 PF01493 GXGXG motif DOE60_RS12710 PF00310 Glutamine amidotransferases class-II DOE60_RS12725 PF16199 Radical_SAM C-terminal domain DOE60_RS12725 PF04055 Radical SAM superfamily DOE60_RS12730 PF18415 Histidine kinase receptor ArcB trans-membrane domain DOE60_RS12730 PF00072 Response regulator receiver domain DOE60_RS12730 PF00989 PAS fold DOE60_RS12730 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS12730 PF01627 Hpt domain DOE60_RS12730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS12740 PF00912 Transglycosylase DOE60_RS12745 PF10707 PhoP regulatory network protein YrbL DOE60_RS12750 PF00381 PTS HPr component phosphorylation site DOE60_RS12755 PF03668 P-loop ATPase protein family DOE60_RS12760 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE60_RS12765 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DOE60_RS12770 PF00309 Sigma-54 factor, Activator interacting domain (AID) DOE60_RS12770 PF04963 Sigma-54 factor, core binding domain DOE60_RS12770 PF04552 Sigma-54, DNA binding domain DOE60_RS12775 PF00005 ABC transporter DOE60_RS12775 PF12399 Branched-chain amino acid ATP-binding cassette transporter DOE60_RS12780 PF03968 OstA-like protein DOE60_RS12785 PF06835 Lipopolysaccharide-assembly, LptC-related DOE60_RS12795 PF01380 SIS domain DOE60_RS12795 PF00571 CBS domain DOE60_RS12800 PF01699 Sodium/calcium exchanger protein DOE60_RS12805 PF00005 ABC transporter DOE60_RS12810 PF02405 Permease MlaE DOE60_RS12815 PF02470 MlaD protein DOE60_RS12820 PF05494 MlaC protein DOE60_RS12825 PF13466 STAS domain DOE60_RS12830 PF01722 BolA-like protein DOE60_RS12835 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DOE60_RS12840 PF13693 Winged helix-turn-helix DNA-binding DOE60_RS12845 PF00348 Polyprenyl synthetase DOE60_RS12850 PF00829 Ribosomal prokaryotic L21 protein DOE60_RS12855 PF01016 Ribosomal L27 protein DOE60_RS12860 PF00892 EamA-like transporter family DOE60_RS12865 PF01926 50S ribosome-binding GTPase DOE60_RS12865 PF01018 GTP1/OBG DOE60_RS12870 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DOE60_RS12875 PF03449 Transcription elongation factor, N-terminal DOE60_RS12875 PF01272 Transcription elongation factor, GreA/GreB, C-term DOE60_RS12880 PF01985 CRS1 / YhbY (CRM) domain DOE60_RS12885 PF01728 FtsJ-like methyltransferase DOE60_RS12895 PF17862 AAA+ lid domain DOE60_RS12895 PF06480 FtsH Extracellular DOE60_RS12895 PF01434 Peptidase family M41 DOE60_RS12895 PF00004 ATPase family associated with various cellular activities (AAA) DOE60_RS12900 PF00809 Pterin binding enzyme DOE60_RS12905 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOE60_RS12905 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOE60_RS12905 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOE60_RS12905 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOE60_RS12910 PF03840 Preprotein translocase SecG subunit DOE60_RS12920 PF00764 Arginosuccinate synthase DOE60_RS12930 PF17384 RimP C-terminal SH3 domain DOE60_RS12930 PF02576 RimP N-terminal domain DOE60_RS12935 PF13184 NusA-like KH domain DOE60_RS12935 PF08529 NusA N-terminal domain DOE60_RS12940 PF08364 Bacterial translation initiation factor IF-2 associated region DOE60_RS12940 PF11987 Translation-initiation factor 2 DOE60_RS12940 PF00009 Elongation factor Tu GTP binding domain DOE60_RS12940 PF04760 Translation initiation factor IF-2, N-terminal region DOE60_RS12945 PF02033 Ribosome-binding factor A DOE60_RS12950 PF09157 Pseudouridine synthase II TruB, C-terminal DOE60_RS12950 PF01509 TruB family pseudouridylate synthase (N terminal domain) DOE60_RS12950 PF16198 tRNA pseudouridylate synthase B C-terminal domain DOE60_RS12955 PF00312 Ribosomal protein S15 DOE60_RS12960 PF00013 KH domain DOE60_RS12960 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DOE60_RS12960 PF01138 3' exoribonuclease family, domain 1 DOE60_RS12960 PF03725 3' exoribonuclease family, domain 2 DOE60_RS12960 PF00575 S1 RNA binding domain DOE60_RS12965 PF07719 Tetratricopeptide repeat DOE60_RS12965 PF13181 Tetratricopeptide repeat DOE60_RS12970 PF00270 DEAD/DEAH box helicase DOE60_RS12970 PF12343 Cold shock protein DEAD box A DOE60_RS12970 PF00271 Helicase conserved C-terminal domain DOE60_RS12970 PF03880 DbpA RNA binding domain DOE60_RS12975 PF03222 Tryptophan/tyrosine permease family DOE60_RS12980 PF00296 Luciferase-like monooxygenase DOE60_RS12985 PF01136 Peptidase family U32 DOE60_RS12990 PF01136 Peptidase family U32 DOE60_RS12995 PF02036 SCP-2 sterol transfer family DOE60_RS13000 PF13508 Acetyltransferase (GNAT) domain DOE60_RS13005 PF01541 GIY-YIG catalytic domain DOE60_RS13015 PF01965 DJ-1/PfpI family DOE60_RS13020 PF13460 NAD(P)H-binding DOE60_RS13025 PF04972 BON domain DOE60_RS13030 PF13580 SIS domain DOE60_RS13035 PF02021 Uncharacterised protein family UPF0102 DOE60_RS13040 PF04348 LppC putative lipoprotein DOE60_RS13045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE60_RS13060 PF04011 LemA family DOE60_RS13070 PF08220 DeoR-like helix-turn-helix domain DOE60_RS13075 PF00107 Zinc-binding dehydrogenase DOE60_RS13075 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS13080 PF03611 PTS system sugar-specific permease component DOE60_RS13085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE60_RS13090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE60_RS13095 PF08013 Tagatose 6 phosphate kinase DOE60_RS13100 PF01116 Fructose-bisphosphate aldolase class-II DOE60_RS13105 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DOE60_RS13105 PF08666 SAF domain DOE60_RS13110 PF03328 HpcH/HpaI aldolase/citrate lyase family DOE60_RS13115 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOE60_RS13115 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DOE60_RS13120 PF02595 Glycerate kinase family DOE60_RS13150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS13150 PF03466 LysR substrate binding domain DOE60_RS13155 PF00291 Pyridoxal-phosphate dependent enzyme DOE60_RS13160 PF03222 Tryptophan/tyrosine permease family DOE60_RS13165 PF00871 Acetokinase family DOE60_RS13170 PF02901 Pyruvate formate lyase-like DOE60_RS13170 PF01228 Glycine radical DOE60_RS13175 PF03315 Serine dehydratase beta chain DOE60_RS13175 PF03313 Serine dehydratase alpha chain DOE60_RS13185 PF03313 Serine dehydratase alpha chain DOE60_RS13195 PF02678 Pirin DOE60_RS13195 PF17954 Quercetinase C-terminal cupin domain DOE60_RS13200 PF03466 LysR substrate binding domain DOE60_RS13200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS13205 PF05656 Protein of unknown function (DUF805) DOE60_RS13210 PF13409 Glutathione S-transferase, N-terminal domain DOE60_RS13215 PF07681 DoxX DOE60_RS13220 PF13997 YqjK-like protein DOE60_RS13225 PF07332 Putative Actinobacterial Holin-X, holin superfamily III DOE60_RS13230 PF05957 Bacterial protein of unknown function (DUF883) DOE60_RS13235 PF06476 Protein of unknown function (DUF1090) DOE60_RS13240 PF13721 SecD export protein N-terminal TM region DOE60_RS13245 PF09335 SNARE associated Golgi protein DOE60_RS13250 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS13250 PF07729 FCD domain DOE60_RS13255 PF07690 Major Facilitator Superfamily DOE60_RS13260 PF02614 Glucuronate isomerase DOE60_RS13265 PF08666 SAF domain DOE60_RS13265 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DOE60_RS13275 PF03741 Integral membrane protein TerC family DOE60_RS13280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE60_RS13285 PF02698 DUF218 domain DOE60_RS13290 PF01863 Protein of unknown function DUF45 DOE60_RS13295 PF05175 Methyltransferase small domain DOE60_RS13300 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS13300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DOE60_RS13305 PF01204 Trehalase DOE60_RS13315 PF13520 Amino acid permease DOE60_RS13320 PF02837 Glycosyl hydrolases family 2, sugar binding domain DOE60_RS13320 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DOE60_RS13320 PF00703 Glycosyl hydrolases family 2 DOE60_RS13320 PF16353 Domain of unknown function(DUF4981) DOE60_RS13320 PF02929 Beta galactosidase small chain DOE60_RS13325 PF04074 YhcH/YjgK/YiaL DOE60_RS13330 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS13335 PF01588 Putative tRNA binding domain DOE60_RS13340 PF00202 Aminotransferase class-III DOE60_RS13350 PF08447 PAS fold DOE60_RS13350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE60_RS13355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE60_RS13355 PF02203 Tar ligand binding domain homologue DOE60_RS13355 PF00672 HAMP domain DOE60_RS13360 PF03551 Transcriptional regulator PadR-like family DOE60_RS13365 PF08021 Siderophore-interacting FAD-binding domain DOE60_RS13365 PF04954 Siderophore-interacting protein DOE60_RS13370 PF02899 Phage integrase, N-terminal SAM-like domain DOE60_RS13370 PF00589 Phage integrase family DOE60_RS13380 PF16452 Bacteriophage CI repressor C-terminal domain DOE60_RS13380 PF07022 Bacteriophage CI repressor helix-turn-helix domain DOE60_RS13390 PF06892 Phage regulatory protein CII (CP76) DOE60_RS13420 PF02086 D12 class N6 adenine-specific DNA methyltransferase DOE60_RS13535 PF03335 Phage tail fibre repeat DOE60_RS13535 PF07484 Phage Tail Collar Domain DOE60_RS13535 PF08400 Prophage tail fibre N-terminal DOE60_RS13570 PF03167 Uracil DNA glycosylase superfamily DOE60_RS13575 PF04542 Sigma-70 region 2 DOE60_RS13575 PF04539 Sigma-70 region 3 DOE60_RS13575 PF04545 Sigma-70, region 4 DOE60_RS13575 PF03979 Sigma-70 factor, region 1.1 DOE60_RS13575 PF04546 Sigma-70, non-essential region DOE60_RS13575 PF00140 Sigma-70 factor, region 1.2 DOE60_RS13580 PF08275 DNA primase catalytic core, N-terminal domain DOE60_RS13580 PF01807 CHC2 zinc finger DOE60_RS13580 PF10410 DnaB-helicase binding domain of primase DOE60_RS13580 PF08278 DNA primase DnaG DnaB-binding DOE60_RS13585 PF01165 Ribosomal protein S21 DOE60_RS13595 PF00814 Glycoprotease family DOE60_RS13605 PF00939 Sodium:sulfate symporter transmembrane region DOE60_RS13610 PF05683 Fumarase C-terminus DOE60_RS13615 PF05681 Fumarate hydratase (Fumerase) DOE60_RS13620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS13620 PF03466 LysR substrate binding domain DOE60_RS13625 PF02660 Glycerol-3-phosphate acyltransferase DOE60_RS13630 PF02152 Dihydroneopterin aldolase DOE60_RS13635 PF02673 Bacitracin resistance protein BacA DOE60_RS13640 PF01743 Poly A polymerase head domain DOE60_RS13640 PF12627 Probable RNA and SrmB- binding site of polymerase A DOE60_RS13640 PF01966 HD domain DOE60_RS13645 PF08239 Bacterial SH3 domain DOE60_RS13655 PF01928 CYTH domain DOE60_RS13660 PF08335 GlnD PII-uridylyltransferase DOE60_RS13660 PF03710 Glutamate-ammonia ligase adenylyltransferase DOE60_RS13665 PF00294 pfkB family carbohydrate kinase DOE60_RS13665 PF01467 Cytidylyltransferase-like DOE60_RS13675 PF01145 SPFH domain / Band 7 family DOE60_RS13675 PF15975 Flotillin DOE60_RS13680 PF07290 Protein of unknown function (DUF1449) DOE60_RS13685 PF08971 Glycogen synthesis protein DOE60_RS13690 PF04380 Membrane fusogenic activity DOE60_RS13695 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DOE60_RS13700 PF00419 Fimbrial protein DOE60_RS13705 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE60_RS13705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS13710 PF13954 PapC N-terminal domain DOE60_RS13710 PF00577 Outer membrane usher protein DOE60_RS13710 PF13953 PapC C-terminal domain DOE60_RS13715 PF00419 Fimbrial protein DOE60_RS13720 PF02600 Disulfide bond formation protein DsbB DOE60_RS13725 PF01323 DSBA-like thioredoxin domain DOE60_RS13730 PF17425 Arylsulfotransferase Ig-like domain DOE60_RS13730 PF05935 Arylsulfotransferase (ASST) DOE60_RS13740 PF02535 ZIP Zinc transporter DOE60_RS13745 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DOE60_RS13750 PF03738 Glutathionylspermidine synthase preATP-grasp DOE60_RS13755 PF06693 Protein of unknown function (DUF1190) DOE60_RS13765 PF02321 Outer membrane efflux protein DOE60_RS13770 PF00293 NUDIX domain DOE60_RS13775 PF06853 Protein of unknown function (DUF1249) DOE60_RS13780 PF00149 Calcineurin-like phosphoesterase DOE60_RS13785 PF05728 Uncharacterised protein family (UPF0227) DOE60_RS13790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS13790 PF00204 DNA gyrase B DOE60_RS13790 PF01751 Toprim domain DOE60_RS13790 PF00986 DNA gyrase B subunit, carboxyl terminus DOE60_RS13795 PF03992 Antibiotic biosynthesis monooxygenase DOE60_RS13800 PF02525 Flavodoxin-like fold DOE60_RS13805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS13805 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS13805 PF08521 Two-component sensor kinase N-terminal DOE60_RS13810 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS13810 PF00072 Response regulator receiver domain DOE60_RS13815 PF04076 Bacterial OB fold (BOF) protein DOE60_RS13820 PF03989 DNA gyrase C-terminal domain, beta-propeller DOE60_RS13820 PF00521 DNA gyrase/topoisomerase IV, subunit A DOE60_RS13825 PF01553 Acyltransferase DOE60_RS13830 PF00394 Multicopper oxidase DOE60_RS13830 PF07732 Multicopper oxidase DOE60_RS13830 PF07731 Multicopper oxidase DOE60_RS13835 PF04055 Radical SAM superfamily DOE60_RS13835 PF08497 Radical SAM N-terminal DOE60_RS13835 PF11842 Domain of unknown function (DUF3362) DOE60_RS13845 PF00939 Sodium:sulfate symporter transmembrane region DOE60_RS13850 PF00248 Aldo/keto reductase family DOE60_RS13855 PF00465 Iron-containing alcohol dehydrogenase DOE60_RS13860 PF06719 AraC-type transcriptional regulator N-terminus DOE60_RS13860 PF12833 Helix-turn-helix domain DOE60_RS13865 PF09335 SNARE associated Golgi protein DOE60_RS13870 PF01053 Cys/Met metabolism PLP-dependent enzyme DOE60_RS13880 PF01618 MotA/TolQ/ExbB proton channel family DOE60_RS13885 PF02472 Biopolymer transport protein ExbD/TolR DOE60_RS13910 PF03350 Uncharacterized protein family, UPF0114 DOE60_RS13915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE60_RS13915 PF02203 Tar ligand binding domain homologue DOE60_RS13915 PF00672 HAMP domain DOE60_RS13920 PF11115 Protein of unknown function (DUF2623) DOE60_RS13930 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOE60_RS13930 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DOE60_RS13935 PF13247 4Fe-4S dicluster domain DOE60_RS13940 PF03916 Polysulphide reductase, NrfD DOE60_RS13945 PF00374 Nickel-dependent hydrogenase DOE60_RS13950 PF01750 Hydrogenase maturation protease DOE60_RS13955 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE DOE60_RS13960 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DOE60_RS13965 PF01455 HupF/HypC family DOE60_RS13970 PF01497 Periplasmic binding protein DOE60_RS13980 PF02798 Glutathione S-transferase, N-terminal domain DOE60_RS13985 PF05257 CHAP domain DOE60_RS13985 PF03738 Glutathionylspermidine synthase preATP-grasp DOE60_RS13995 PF02614 Glucuronate isomerase DOE60_RS14000 PF08125 Mannitol dehydrogenase C-terminal domain DOE60_RS14000 PF01232 Mannitol dehydrogenase Rossmann domain DOE60_RS14005 PF03786 D-mannonate dehydratase (UxuA) DOE60_RS14015 PF07690 Major Facilitator Superfamily DOE60_RS14025 PF01522 Polysaccharide deacetylase DOE60_RS14035 PF04965 Gene 25-like lysozyme DOE60_RS14040 PF00171 Aldehyde dehydrogenase family DOE60_RS14045 PF01266 FAD dependent oxidoreductase DOE60_RS14055 PF13520 Amino acid permease DOE60_RS14065 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS14070 PF04055 Radical SAM superfamily DOE60_RS14075 PF00884 Sulfatase DOE60_RS14105 PF18269 T3SS EscN ATPase C-terminal domain DOE60_RS14105 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOE60_RS14105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE60_RS14110 PF00771 FHIPEP family DOE60_RS14130 PF01514 Secretory protein of YscJ/FliF family DOE60_RS14140 PF00263 Bacterial type II and III secretion system protein DOE60_RS14140 PF03958 Bacterial type II/III secretion system short domain DOE60_RS14160 PF01464 Transglycosylase SLT domain DOE60_RS14165 PF01312 FlhB HrpN YscU SpaS Family DOE60_RS14170 PF01311 Bacterial export proteins, family 1 DOE60_RS14175 PF01313 Bacterial export proteins, family 3 DOE60_RS14180 PF00813 FliP family DOE60_RS14205 PF00816 H-NS histone family DOE60_RS14210 PF07489 Translocated intimin receptor (Tir) C-terminus DOE60_RS14210 PF07490 Translocated intimin receptor (Tir) N-terminus DOE60_RS14210 PF03549 Translocated intimin receptor (Tir) intimin-binding domain DOE60_RS14215 PF05932 Tir chaperone protein (CesT) family DOE60_RS14220 PF07979 Intimin C-type lectin domain DOE60_RS14220 PF01476 LysM domain DOE60_RS14220 PF02369 Bacterial Ig-like domain (group 1) DOE60_RS14220 PF11924 Inverse autotransporter, beta-domain DOE60_RS14230 PF07201 HrpJ-like domain DOE60_RS14245 PF05802 Enterobacterial EspB protein DOE60_RS14325 PF04717 Type VI secretion system, phage-baseplate injector DOE60_RS14345 PF13693 Winged helix-turn-helix DNA-binding DOE60_RS14365 PF00589 Phage integrase family DOE60_RS14365 PF13356 Arm DNA-binding domain DOE60_RS14375 PF04474 Protein of unknown function (DUF554) DOE60_RS14385 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DOE60_RS14385 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DOE60_RS14385 PF01276 Orn/Lys/Arg decarboxylase, major domain DOE60_RS14390 PF03825 Nucleoside H+ symporter DOE60_RS14395 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DOE60_RS14395 PF01464 Transglycosylase SLT domain DOE60_RS14400 PF04362 Bacterial Fe(2+) trafficking DOE60_RS14405 PF14815 NUDIX domain DOE60_RS14405 PF00730 HhH-GPD superfamily base excision DNA repair protein DOE60_RS14405 PF00633 Helix-hairpin-helix motif DOE60_RS14415 PF02390 Putative methyltransferase DOE60_RS14420 PF04320 Protein with unknown function (DUF469) DOE60_RS14425 PF11101 Protein of unknown function (DUF2884) DOE60_RS14430 PF17763 Glutaminase/Asparaginase C-terminal domain DOE60_RS14430 PF00710 Asparaginase, N-terminal DOE60_RS14435 PF06717 Protein of unknown function (DUF1202) DOE60_RS14440 PF04055 Radical SAM superfamily DOE60_RS14440 PF06969 HemN C-terminal domain DOE60_RS14445 PF01725 Ham1 family DOE60_RS14450 PF02594 Uncharacterised ACR, YggU family COG1872 DOE60_RS14455 PF02325 YGGT family DOE60_RS14460 PF01168 Alanine racemase, N-terminal domain DOE60_RS14465 PF00437 Type II/IV secretion system protein DOE60_RS14475 PF03652 Holliday junction resolvase DOE60_RS14480 PF02622 Uncharacterized ACR, COG1678 DOE60_RS14485 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DOE60_RS14485 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DOE60_RS14490 PF04452 RNA methyltransferase DOE60_RS14495 PF04231 Endonuclease I DOE60_RS14500 PF17283 SprT-like zinc ribbon domain DOE60_RS14500 PF10263 SprT-like family DOE60_RS14505 PF00083 Sugar (and other) transporter DOE60_RS14510 PF02772 S-adenosylmethionine synthetase, central domain DOE60_RS14510 PF00438 S-adenosylmethionine synthetase, N-terminal domain DOE60_RS14510 PF02773 S-adenosylmethionine synthetase, C-terminal domain DOE60_RS14520 PF17430 Uncharacterized YqgC-like DOE60_RS14525 PF11036 Virulence promoting factor DOE60_RS14530 PF17810 Arginine decarboxylase helical bundle domain DOE60_RS14530 PF17944 Arginine decarboxylase C-terminal helical extension DOE60_RS14530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DOE60_RS14540 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS14540 PF07729 FCD domain DOE60_RS14545 PF13378 Enolase C-terminal domain-like DOE60_RS14545 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOE60_RS14550 PF08125 Mannitol dehydrogenase C-terminal domain DOE60_RS14550 PF01232 Mannitol dehydrogenase Rossmann domain DOE60_RS14555 PF00107 Zinc-binding dehydrogenase DOE60_RS14555 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS14560 PF02615 Malate/L-lactate dehydrogenase DOE60_RS14565 PF04074 YhcH/YjgK/YiaL DOE60_RS14570 PF07690 Major Facilitator Superfamily DOE60_RS14575 PF12697 Alpha/beta hydrolase family DOE60_RS14580 PF00491 Arginase family DOE60_RS14585 PF01435 Peptidase family M48 DOE60_RS14590 PF02779 Transketolase, pyrimidine binding domain DOE60_RS14590 PF00456 Transketolase, thiamine diphosphate binding domain DOE60_RS14590 PF02780 Transketolase, C-terminal domain DOE60_RS14595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE60_RS14600 PF02378 Phosphotransferase system, EIIC DOE60_RS14600 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE60_RS14605 PF00107 Zinc-binding dehydrogenase DOE60_RS14605 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS14610 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DOE60_RS14620 PF05068 Mannitol repressor DOE60_RS14630 PF00005 ABC transporter DOE60_RS14635 PF00005 ABC transporter DOE60_RS14660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DOE60_RS14660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DOE60_RS14665 PF00162 Phosphoglycerate kinase DOE60_RS14670 PF01116 Fructose-bisphosphate aldolase class-II DOE60_RS14675 PF05552 Conserved TM helix DOE60_RS14675 PF00924 Mechanosensitive ion channel DOE60_RS14680 PF01810 LysE type translocator DOE60_RS14685 PF04402 Protein of unknown function (DUF541) DOE60_RS14690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS14690 PF03466 LysR substrate binding domain DOE60_RS14695 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DOE60_RS14695 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DOE60_RS14700 PF00378 Enoyl-CoA hydratase/isomerase DOE60_RS14710 PF01642 Methylmalonyl-CoA mutase DOE60_RS14710 PF02310 B12 binding domain DOE60_RS14720 PF03466 LysR substrate binding domain DOE60_RS14720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS14725 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DOE60_RS14730 PF01842 ACT domain DOE60_RS14730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOE60_RS14730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE60_RS14735 PF01812 5-formyltetrahydrofolate cyclo-ligase family DOE60_RS14745 PF05164 Cell division protein ZapA DOE60_RS14755 PF03695 Uncharacterised protein family (UPF0149) DOE60_RS14760 PF05195 Aminopeptidase P, N-terminal domain DOE60_RS14760 PF00557 Metallopeptidase family M24 DOE60_RS14765 PF01494 FAD binding domain DOE60_RS14770 PF01494 FAD binding domain DOE60_RS14775 PF08669 Glycine cleavage T-protein C-terminal barrel domain DOE60_RS14775 PF01571 Aminomethyltransferase folate-binding domain DOE60_RS14780 PF01597 Glycine cleavage H-protein DOE60_RS14785 PF02347 Glycine cleavage system P-protein DOE60_RS14790 PF00232 Glycosyl hydrolase family 1 DOE60_RS14795 PF04266 ASCH domain DOE60_RS14800 PF03006 Haemolysin-III related DOE60_RS14805 PF01571 Aminomethyltransferase folate-binding domain DOE60_RS14815 PF03937 Flavinator of succinate dehydrogenase DOE60_RS14820 PF07254 Membrane-bound toxin component of toxin-antitoxin system DOE60_RS14825 PF00258 Flavodoxin DOE60_RS14830 PF00589 Phage integrase family DOE60_RS14830 PF02899 Phage integrase, N-terminal SAM-like domain DOE60_RS14835 PF10411 Disulfide bond isomerase protein N-terminus DOE60_RS14835 PF13098 Thioredoxin-like domain DOE60_RS14840 PF02272 DHHA1 domain DOE60_RS14840 PF01368 DHH family DOE60_RS14840 PF17768 RecJ OB domain DOE60_RS14850 PF01336 OB-fold nucleic acid binding domain DOE60_RS14850 PF00152 tRNA synthetases class II (D, K and N) DOE60_RS14855 PF00293 NUDIX domain DOE60_RS14860 PF01476 LysM domain DOE60_RS14860 PF01551 Peptidase family M23 DOE60_RS14870 PF03824 High-affinity nickel-transport protein DOE60_RS14875 PF02583 Metal-sensitive transcriptional repressor DOE60_RS14880 PF03222 Tryptophan/tyrosine permease family DOE60_RS14890 PF03466 LysR substrate binding domain DOE60_RS14890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS14895 PF02803 Thiolase, C-terminal domain DOE60_RS14895 PF00108 Thiolase, N-terminal domain DOE60_RS14905 PF04962 KduI/IolB family DOE60_RS14915 PF00083 Sugar (and other) transporter DOE60_RS14920 PF01177 Asp/Glu/Hydantoin racemase DOE60_RS14925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS14925 PF03466 LysR substrate binding domain DOE60_RS14930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DOE60_RS14930 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DOE60_RS14935 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS14940 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS14955 PF00501 AMP-binding enzyme DOE60_RS14955 PF01553 Acyltransferase DOE60_RS14960 PF07690 Major Facilitator Superfamily DOE60_RS14965 PF00248 Aldo/keto reductase family DOE60_RS14970 PF06004 Bacterial protein of unknown function (DUF903) DOE60_RS14975 PF03741 Integral membrane protein TerC family DOE60_RS14980 PF02976 DNA mismatch repair enzyme MutH DOE60_RS14985 PF00293 NUDIX domain DOE60_RS14990 PF00391 PEP-utilising enzyme, mobile domain DOE60_RS14990 PF02896 PEP-utilising enzyme, TIM barrel domain DOE60_RS14990 PF05524 PEP-utilising enzyme, N-terminal DOE60_RS14990 PF01590 GAF domain DOE60_RS15000 PF01790 Prolipoprotein diacylglyceryl transferase DOE60_RS15005 PF00303 Thymidylate synthase DOE60_RS15015 PF07963 Prokaryotic N-terminal methylation motif DOE60_RS15020 PF07963 Prokaryotic N-terminal methylation motif DOE60_RS15025 PF10713 Protein of unknown function (DUF2509) DOE60_RS15030 PF07963 Prokaryotic N-terminal methylation motif DOE60_RS15030 PF12528 Type II secretion prepilin peptidase dependent protein C DOE60_RS15035 PF17946 RecC C-terminal domain DOE60_RS15040 PF16187 Middle or third domain of peptidase_M16 DOE60_RS15040 PF00675 Insulinase (Peptidase family M16) DOE60_RS15040 PF05193 Peptidase M16 inactive domain DOE60_RS15045 PF13361 UvrD-like helicase C-terminal domain DOE60_RS15045 PF00580 UvrD/REP helicase N-terminal domain DOE60_RS15045 PF12705 PD-(D/E)XK nuclease superfamily DOE60_RS15050 PF13538 UvrD-like helicase C-terminal domain DOE60_RS15055 PF00583 Acetyltransferase (GNAT) family DOE60_RS15055 PF00696 Amino acid kinase family DOE60_RS15060 PF11741 AMIN domain DOE60_RS15060 PF01520 N-acetylmuramoyl-L-alanine amidase DOE60_RS15075 PF06725 3D domain DOE60_RS15075 PF03562 MltA specific insert domain DOE60_RS15080 PF00899 ThiF family DOE60_RS15085 PF00892 EamA-like transporter family DOE60_RS15090 PF02657 Fe-S metabolism associated domain DOE60_RS15095 PF00266 Aminotransferase class-V DOE60_RS15100 PF06004 Bacterial protein of unknown function (DUF903) DOE60_RS15105 PF03466 LysR substrate binding domain DOE60_RS15105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS15110 PF04241 Protein of unknown function (DUF423) DOE60_RS15115 PF01728 FtsJ-like methyltransferase DOE60_RS15115 PF18125 RlmM ferredoxin-like domain DOE60_RS15120 PF08220 DeoR-like helix-turn-helix domain DOE60_RS15120 PF00455 DeoR C terminal sensor domain DOE60_RS15125 PF05025 RbsD / FucU transport protein family DOE60_RS15130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE60_RS15130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE60_RS15135 PF07882 L-fucose isomerase, second N-terminal domain DOE60_RS15135 PF07881 L-fucose isomerase, first N-terminal domain DOE60_RS15135 PF02952 L-fucose isomerase, C-terminal domain DOE60_RS15140 PF07690 Major Facilitator Superfamily DOE60_RS15145 PF00596 Class II Aldolase and Adducin N-terminal domain DOE60_RS15150 PF00465 Iron-containing alcohol dehydrogenase DOE60_RS15155 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DOE60_RS15155 PF01367 5'-3' exonuclease, C-terminal SAM fold DOE60_RS15165 PF03313 Serine dehydratase alpha chain DOE60_RS15165 PF03315 Serine dehydratase beta chain DOE60_RS15175 PF11892 Domain of unknown function (DUF3412) DOE60_RS15175 PF03641 Possible lysine decarboxylase DOE60_RS15175 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DOE60_RS15180 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DOE60_RS15180 PF14489 QueF-like protein DOE60_RS15185 PF07348 Syd protein (SUKH-2) DOE60_RS15195 PF04287 tRNA pseudouridine synthase C DOE60_RS15200 PF00849 RNA pseudouridylate synthase DOE60_RS15205 PF00258 Flavodoxin DOE60_RS15215 PF07690 Major Facilitator Superfamily DOE60_RS15220 PF13378 Enolase C-terminal domain-like DOE60_RS15220 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOE60_RS15225 PF13378 Enolase C-terminal domain-like DOE60_RS15230 PF02595 Glycerate kinase family DOE60_RS15235 PF00072 Response regulator receiver domain DOE60_RS15235 PF01627 Hpt domain DOE60_RS15235 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS15235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS15235 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DOE60_RS15235 PF00672 HAMP domain DOE60_RS15240 PF05958 tRNA (Uracil-5-)-methyltransferase DOE60_RS15240 PF01938 TRAM domain DOE60_RS15245 PF04607 Region found in RelA / SpoT proteins DOE60_RS15245 PF13291 ACT domain DOE60_RS15245 PF02824 TGS domain DOE60_RS15250 PF03819 MazG nucleotide pyrophosphohydrolase domain DOE60_RS15255 PF06418 CTP synthase N-terminus DOE60_RS15255 PF00117 Glutamine amidotransferase class-I DOE60_RS15260 PF00113 Enolase, C-terminal TIM barrel domain DOE60_RS15260 PF03952 Enolase, N-terminal domain DOE60_RS15265 PF04055 Radical SAM superfamily DOE60_RS15270 PF12706 Beta-lactamase superfamily domain DOE60_RS15270 PF03099 Biotin/lipoate A/B protein ligase family DOE60_RS15275 PF01242 6-pyruvoyl tetrahydropterin synthase DOE60_RS15290 PF00667 FAD binding domain DOE60_RS15290 PF00175 Oxidoreductase NAD-binding domain DOE60_RS15290 PF00258 Flavodoxin DOE60_RS15295 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DOE60_RS15295 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DOE60_RS15300 PF01507 Phosphoadenosine phosphosulfate reductase family DOE60_RS15305 PF11047 Salmonella outer protein D DOE60_RS15310 PF00270 DEAD/DEAH box helicase DOE60_RS15310 PF18019 HD domain DOE60_RS15310 PF00271 Helicase conserved C-terminal domain DOE60_RS15315 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) DOE60_RS15325 PF09344 CT1975-like protein DOE60_RS15330 PF09704 CRISPR-associated protein (Cas_Cas5) DOE60_RS15340 PF01867 CRISPR associated protein Cas1 DOE60_RS15345 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) DOE60_RS15350 PF04389 Peptidase family M28 DOE60_RS15355 PF01507 Phosphoadenosine phosphosulfate reductase family DOE60_RS15360 PF00009 Elongation factor Tu GTP binding domain DOE60_RS15370 PF12084 Protein of unknown function (DUF3561) DOE60_RS15375 PF04977 Septum formation initiator DOE60_RS15380 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DOE60_RS15385 PF02542 YgbB family DOE60_RS15390 PF01142 tRNA pseudouridine synthase D (TruD) DOE60_RS15395 PF01975 Survival protein SurE DOE60_RS15405 PF01476 LysM domain DOE60_RS15405 PF01551 Peptidase family M23 DOE60_RS15410 PF04545 Sigma-70, region 4 DOE60_RS15410 PF04539 Sigma-70 region 3 DOE60_RS15410 PF04542 Sigma-70 region 2 DOE60_RS15410 PF00140 Sigma-70 factor, region 1.2 DOE60_RS15420 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DOE60_RS15425 PF02441 Flavoprotein DOE60_RS15430 PF01047 MarR family DOE60_RS15435 PF00455 DeoR C terminal sensor domain DOE60_RS15435 PF08220 DeoR-like helix-turn-helix domain DOE60_RS15440 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOE60_RS15440 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DOE60_RS15445 PF17042 Nucleotide-binding C-terminal domain DOE60_RS15445 PF07005 Sugar-binding N-terminal domain DOE60_RS15450 PF00596 Class II Aldolase and Adducin N-terminal domain DOE60_RS15455 PF01261 Xylose isomerase-like TIM barrel DOE60_RS15460 PF01370 NAD dependent epimerase/dehydratase family DOE60_RS15465 PF02447 GntP family permease DOE60_RS15470 PF00488 MutS domain V DOE60_RS15470 PF01624 MutS domain I DOE60_RS15470 PF05188 MutS domain II DOE60_RS15470 PF05192 MutS domain III DOE60_RS15470 PF05190 MutS family domain IV DOE60_RS15475 PF04741 InvH outer membrane lipoprotein DOE60_RS15480 PF12833 Helix-turn-helix domain DOE60_RS15485 PF00263 Bacterial type II and III secretion system protein DOE60_RS15485 PF03958 Bacterial type II/III secretion system short domain DOE60_RS15490 PF07201 HrpJ-like domain DOE60_RS15495 PF00771 FHIPEP family DOE60_RS15500 PF03519 Invasion protein B family DOE60_RS15505 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE60_RS15505 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOE60_RS15505 PF18269 T3SS EscN ATPase C-terminal domain DOE60_RS15510 PF02090 Salmonella surface presentation of antigen gene type M protein DOE60_RS15515 PF02510 Surface presentation of antigens protein DOE60_RS15520 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOE60_RS15525 PF00813 FliP family DOE60_RS15530 PF01313 Bacterial export proteins, family 3 DOE60_RS15535 PF01311 Bacterial export proteins, family 1 DOE60_RS15540 PF01312 FlhB HrpN YscU SpaS Family DOE60_RS15545 PF07720 Tetratricopeptide repeat DOE60_RS15550 PF16535 Type III cell invasion protein SipB DOE60_RS15550 PF04888 Secretion system effector C (SseC) like family DOE60_RS15555 PF09599 Salmonella-Shigella invasin protein C (IpaC_SipC) DOE60_RS15560 PF06511 Type III secretion systems tip complex components DOE60_RS15565 PF09052 SipA N-terminal domain DOE60_RS15570 PF00550 Phosphopantetheine attachment site DOE60_RS15585 PF00102 Protein-tyrosine phosphatase DOE60_RS15585 PF03545 Yersinia virulence determinant (YopE) DOE60_RS15585 PF09119 SicP binding DOE60_RS15590 PF01464 Transglycosylase SLT domain DOE60_RS15595 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS15600 PF12833 Helix-turn-helix domain DOE60_RS15605 PF09480 Type III secretion system protein PrgH-EprH (PrgH) DOE60_RS15610 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF DOE60_RS15620 PF01514 Secretory protein of YscJ/FliF family DOE60_RS15625 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) DOE60_RS15640 PF12833 Helix-turn-helix domain DOE60_RS15655 PF00950 ABC 3 transport family DOE60_RS15660 PF00950 ABC 3 transport family DOE60_RS15665 PF00005 ABC transporter DOE60_RS15670 PF01297 Zinc-uptake complex component A periplasmic DOE60_RS15675 PF11756 Nitrous oxide-stimulated promoter DOE60_RS15680 PF01590 GAF domain DOE60_RS15680 PF02954 Bacterial regulatory protein, Fis family DOE60_RS15680 PF00158 Sigma-54 interaction domain DOE60_RS15685 PF02769 AIR synthase related protein, C-terminal domain DOE60_RS15685 PF00586 AIR synthase related protein, N-terminal domain DOE60_RS15690 PF01924 Hydrogenase formation hypA family DOE60_RS15695 PF01455 HupF/HypC family DOE60_RS15700 PF02492 CobW/HypB/UreG, nucleotide-binding domain DOE60_RS15705 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DOE60_RS15715 PF11046 Transcriptional repressor of hyc and hyp operons DOE60_RS15720 PF13247 4Fe-4S dicluster domain DOE60_RS15725 PF00361 Proton-conducting membrane transporter DOE60_RS15730 PF00146 NADH dehydrogenase DOE60_RS15735 PF00374 Nickel-dependent hydrogenase DOE60_RS15735 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DOE60_RS15735 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DOE60_RS15740 PF12838 4Fe-4S dicluster domain DOE60_RS15745 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOE60_RS15750 PF07450 Formate hydrogenlyase maturation protein HycH DOE60_RS15755 PF01750 Hydrogenase maturation protease DOE60_RS15765 PF12800 4Fe-4S binding domain DOE60_RS15765 PF13247 4Fe-4S dicluster domain DOE60_RS15770 PF17788 HypF Kae1-like domain DOE60_RS15770 PF01300 Telomere recombination DOE60_RS15770 PF00708 Acylphosphatase DOE60_RS15770 PF07503 HypF finger DOE60_RS15775 PF18113 Rubredoxin binding C-terminal domain DOE60_RS15775 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS15780 PF00301 Rubredoxin DOE60_RS15780 PF00258 Flavodoxin DOE60_RS15780 PF00753 Metallo-beta-lactamase superfamily DOE60_RS15785 PF00158 Sigma-54 interaction domain DOE60_RS15785 PF01590 GAF domain DOE60_RS15790 PF00571 CBS domain DOE60_RS15790 PF01380 SIS domain DOE60_RS15795 PF08220 DeoR-like helix-turn-helix domain DOE60_RS15795 PF00455 DeoR C terminal sensor domain DOE60_RS15800 PF06923 Glucitol operon activator protein (GutM) DOE60_RS15805 PF00106 short chain dehydrogenase DOE60_RS15810 PF03829 PTS system glucitol/sorbitol-specific IIA component DOE60_RS15815 PF03612 Sorbitol phosphotransferase enzyme II N-terminus DOE60_RS15815 PF07663 Sorbitol phosphotransferase enzyme II C-terminus DOE60_RS15820 PF03608 PTS system enzyme II sorbitol-specific factor DOE60_RS15825 PF13406 Transglycosylase SLT domain DOE60_RS15835 PF02464 Competence-damaged protein DOE60_RS15840 PF00154 recA bacterial DNA recombination protein DOE60_RS15845 PF02631 RecX family DOE60_RS15855 PF02272 DHHA1 domain DOE60_RS15855 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DOE60_RS15855 PF01411 tRNA synthetases class II (A) DOE60_RS15860 PF02599 Global regulator protein family DOE60_RS15890 PF13419 Haloacid dehalogenase-like hydrolase DOE60_RS15895 PF09335 SNARE associated Golgi protein DOE60_RS15900 PF04262 Glutamate-cysteine ligase DOE60_RS15905 PF02664 S-Ribosylhomocysteinase (LuxS) DOE60_RS15925 PF07690 Major Facilitator Superfamily DOE60_RS15930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE60_RS15930 PF00529 HlyD membrane-fusion protein of T1SS DOE60_RS15935 PF01047 MarR family DOE60_RS15940 PF07690 Major Facilitator Superfamily DOE60_RS15945 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DOE60_RS15950 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS15955 PF00571 CBS domain DOE60_RS15955 PF00005 ABC transporter DOE60_RS15965 PF00268 Ribonucleotide reductase, small chain DOE60_RS15970 PF08343 Ribonucleotide reductase N-terminal DOE60_RS15970 PF00317 Ribonucleotide reductase, all-alpha domain DOE60_RS15970 PF02867 Ribonucleotide reductase, barrel domain DOE60_RS15975 PF07972 NrdI Flavodoxin like DOE60_RS15980 PF00462 Glutaredoxin DOE60_RS15990 PF02627 Carboxymuconolactone decarboxylase family DOE60_RS15995 PF00155 Aminotransferase class I and II DOE60_RS15995 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS16000 PF05957 Bacterial protein of unknown function (DUF883) DOE60_RS16005 PF09400 Protein of unknown function (DUF2002) DOE60_RS16010 PF06610 L-alanine exporter DOE60_RS16020 PF00816 H-NS histone family DOE60_RS16030 PF11127 Protein of unknown function (DUF2892) DOE60_RS16030 PF00581 Rhodanese-like domain DOE60_RS16035 PF01022 Bacterial regulatory protein, arsR family DOE60_RS16040 PF01679 Proteolipid membrane potential modulator DOE60_RS16050 PF04972 BON domain DOE60_RS16050 PF01476 LysM domain DOE60_RS16055 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS16055 PF07729 FCD domain DOE60_RS16060 PF00324 Amino acid permease DOE60_RS16065 PF00202 Aminotransferase class-III DOE60_RS16070 PF00171 Aldehyde dehydrogenase family DOE60_RS16075 PF01266 FAD dependent oxidoreductase DOE60_RS16080 PF08943 CsiD DOE60_RS16085 PF01970 Tripartite tricarboxylate transporter TctA family DOE60_RS16100 PF00072 Response regulator receiver domain DOE60_RS16100 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS16105 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS16105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS16110 PF03824 High-affinity nickel-transport protein DOE60_RS16130 PF04393 Protein of unknown function (DUF535) DOE60_RS16140 PF00805 Pentapeptide repeats (8 copies) DOE60_RS16150 PF07715 TonB-dependent Receptor Plug Domain DOE60_RS16150 PF00593 TonB dependent receptor DOE60_RS16155 PF00756 Putative esterase DOE60_RS16165 PF00664 ABC transporter transmembrane region DOE60_RS16165 PF00005 ABC transporter DOE60_RS16170 PF06722 Protein of unknown function (DUF1205) DOE60_RS16180 PF02796 Helix-turn-helix domain of resolvase DOE60_RS16180 PF00239 Resolvase, N terminal domain DOE60_RS16185 PF08884 Flagellin D3 domain DOE60_RS16185 PF00669 Bacterial flagellin N-terminal helical region DOE60_RS16185 PF00700 Bacterial flagellin C-terminal helical region DOE60_RS16190 PF03614 Repressor of phase-1 flagellin DOE60_RS16200 PF01042 Endoribonuclease L-PSP DOE60_RS16205 PF00291 Pyridoxal-phosphate dependent enzyme DOE60_RS16210 PF08348 YheO-like PAS domain DOE60_RS16210 PF13309 HTH domain DOE60_RS16245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE60_RS16245 PF00529 HlyD membrane-fusion protein of T1SS DOE60_RS16250 PF00005 ABC transporter DOE60_RS16250 PF00664 ABC transporter transmembrane region DOE60_RS16265 PF01668 SmpB protein DOE60_RS16270 PF03364 Polyketide cyclase / dehydrase and lipid transport DOE60_RS16275 PF03658 RnfH family Ubiquitin DOE60_RS16280 PF04355 SmpA / OmlA family DOE60_RS16285 PF02463 RecF/RecN/SMC N terminal domain DOE60_RS16290 PF01513 ATP-NAD kinase DOE60_RS16300 PF01025 GrpE DOE60_RS16305 PF03471 Transporter associated domain DOE60_RS16305 PF00571 CBS domain DOE60_RS16305 PF01595 Cyclin M transmembrane N-terminal domain DOE60_RS16310 PF01578 Cytochrome C assembly protein DOE60_RS16320 PF02978 Signal peptide binding domain DOE60_RS16320 PF02881 SRP54-type protein, helical bundle domain DOE60_RS16320 PF00448 SRP54-type protein, GTPase domain DOE60_RS16325 PF00886 Ribosomal protein S16 DOE60_RS16330 PF01782 RimM N-terminal domain DOE60_RS16330 PF05239 PRC-barrel domain DOE60_RS16335 PF01746 tRNA (Guanine-1)-methyltransferase DOE60_RS16340 PF01245 Ribosomal protein L19 DOE60_RS16345 PF17152 Periplasmic sensor domain DOE60_RS16345 PF00990 Diguanylate cyclase, GGDEF domain DOE60_RS16350 PF13689 YfiR/HmsC-like DOE60_RS16355 PF00793 DAHP synthetase I family DOE60_RS16360 PF02153 Prephenate dehydrogenase DOE60_RS16360 PF01817 Chorismate mutase type II DOE60_RS16365 PF08450 SMP-30/Gluconolactonase/LRE-like region DOE60_RS16370 PF00800 Prephenate dehydratase DOE60_RS16370 PF01817 Chorismate mutase type II DOE60_RS16380 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DOE60_RS16385 PF13525 Outer membrane lipoprotein DOE60_RS16390 PF00849 RNA pseudouridylate synthase DOE60_RS16390 PF01479 S4 domain DOE60_RS16395 PF02578 Multi-copper polyphenol oxidoreductase laccase DOE60_RS16400 PF07724 AAA domain (Cdc48 subfamily) DOE60_RS16400 PF17871 AAA lid domain DOE60_RS16400 PF02861 Clp amino terminal domain, pathogenicity island component DOE60_RS16400 PF10431 C-terminal, D2-small domain, of ClpB protein DOE60_RS16400 PF00004 ATPase family associated with various cellular activities (AAA) DOE60_RS16435 PF00083 Sugar (and other) transporter DOE60_RS16440 PF10043 Predicted periplasmic lipoprotein (DUF2279) DOE60_RS16445 PF13091 PLD-like domain DOE60_RS16450 PF13607 Succinyl-CoA ligase like flavodoxin domain DOE60_RS16450 PF13380 CoA binding domain DOE60_RS16450 PF00583 Acetyltransferase (GNAT) family DOE60_RS16455 PF03942 DTW domain DOE60_RS16460 PF00085 Thioredoxin DOE60_RS16465 PF08032 RNA 2'-O ribose methyltransferase substrate binding DOE60_RS16465 PF00588 SpoU rRNA Methylase family DOE60_RS16470 PF03167 Uracil DNA glycosylase superfamily DOE60_RS16475 PF01228 Glycine radical DOE60_RS16480 PF00270 DEAD/DEAH box helicase DOE60_RS16480 PF00271 Helicase conserved C-terminal domain DOE60_RS16485 PF05175 Methyltransferase small domain DOE60_RS16490 PF02910 Fumarate reductase flavoprotein C-term DOE60_RS16490 PF00890 FAD binding domain DOE60_RS16500 PF08281 Sigma-70, region 4 DOE60_RS16500 PF04542 Sigma-70 region 2 DOE60_RS16505 PF03873 Anti sigma-E protein RseA, C-terminal domain DOE60_RS16505 PF03872 Anti sigma-E protein RseA, N-terminal domain DOE60_RS16510 PF17188 MucB/RseB C-terminal domain DOE60_RS16510 PF03888 MucB/RseB N-terminal domain DOE60_RS16525 PF00679 Elongation factor G C-terminus DOE60_RS16525 PF00009 Elongation factor Tu GTP binding domain DOE60_RS16525 PF06421 GTP-binding protein LepA C-terminus DOE60_RS16525 PF03144 Elongation factor Tu domain 2 DOE60_RS16530 PF10502 Signal peptidase, peptidase S26 DOE60_RS16540 PF14622 Ribonuclease-III-like DOE60_RS16540 PF00035 Double-stranded RNA binding motif DOE60_RS16545 PF01926 50S ribosome-binding GTPase DOE60_RS16545 PF07650 KH domain DOE60_RS16550 PF02565 Recombination protein O C terminal DOE60_RS16550 PF11967 Recombination protein O N terminal DOE60_RS16555 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DOE60_RS16560 PF01648 4'-phosphopantetheinyl transferase superfamily DOE60_RS16565 PF12838 4Fe-4S dicluster domain DOE60_RS16570 PF01418 Helix-turn-helix domain, rpiR family DOE60_RS16570 PF01380 SIS domain DOE60_RS16575 PF01380 SIS domain DOE60_RS16580 PF00367 phosphotransferase system, EIIB DOE60_RS16580 PF02378 Phosphotransferase system, EIIC DOE60_RS16590 PF14437 MafB19-like deaminase DOE60_RS16595 PF01464 Transglycosylase SLT domain DOE60_RS16595 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE60_RS16605 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DOE60_RS16605 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DOE60_RS16605 PF02769 AIR synthase related protein, C-terminal domain DOE60_RS16610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS16610 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS16615 PF13942 YfhG lipoprotein DOE60_RS16620 PF00072 Response regulator receiver domain DOE60_RS16620 PF00158 Sigma-54 interaction domain DOE60_RS16625 PF00543 Nitrogen regulatory protein P-II DOE60_RS16630 PF00854 POT family DOE60_RS16635 PF01276 Orn/Lys/Arg decarboxylase, major domain DOE60_RS16635 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DOE60_RS16635 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DOE60_RS16640 PF13520 Amino acid permease DOE60_RS16645 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS16645 PF18500 CadC C-terminal domain 1 DOE60_RS16650 PF00970 Oxidoreductase FAD-binding domain DOE60_RS16650 PF00175 Oxidoreductase NAD-binding domain DOE60_RS16650 PF00042 Globin DOE60_RS16655 PF00464 Serine hydroxymethyltransferase DOE60_RS16660 PF12832 MFS_1 like family DOE60_RS16665 PF00874 PRD domain DOE60_RS16675 PF03824 High-affinity nickel-transport protein DOE60_RS16680 PF13187 4Fe-4S dicluster domain DOE60_RS16680 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DOE60_RS16680 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DOE60_RS16685 PF00175 Oxidoreductase NAD-binding domain DOE60_RS16685 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DOE60_RS16690 PF17179 4Fe-4S dicluster domain DOE60_RS16695 PF12146 Serine aminopeptidase, S33 DOE60_RS16700 PF00459 Inositol monophosphatase family DOE60_RS16705 PF00588 SpoU rRNA Methylase family DOE60_RS16710 PF02082 Transcriptional regulator DOE60_RS16715 PF00266 Aminotransferase class-V DOE60_RS16720 PF01592 NifU-like N terminal domain DOE60_RS16725 PF01521 Iron-sulphur cluster biosynthesis DOE60_RS16730 PF07743 HSCB C-terminal oligomerisation domain DOE60_RS16735 PF00012 Hsp70 protein DOE60_RS16740 PF00111 2Fe-2S iron-sulfur cluster binding domain DOE60_RS16745 PF04384 Iron-sulphur cluster assembly DOE60_RS16750 PF12404 Peptidase DOE60_RS16750 PF00883 Cytosol aminopeptidase family, catalytic domain DOE60_RS16755 PF14581 SseB protein C-terminal domain DOE60_RS16755 PF07179 SseB protein N-terminal domain DOE60_RS16765 PF00581 Rhodanese-like domain DOE60_RS16770 PF00207 Alpha-2-macroglobulin family DOE60_RS16770 PF07703 Alpha-2-macroglobulin bait region domain DOE60_RS16770 PF07678 A-macroglobulin TED domain DOE60_RS16770 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain DOE60_RS16770 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DOE60_RS16770 PF01835 MG2 domain DOE60_RS16770 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain DOE60_RS16770 PF11974 Bacterial alpha-2-macroglobulin MG3 domain DOE60_RS16770 PF17962 Bacterial macroglobulin domain 6 DOE60_RS16775 PF00912 Transglycosylase DOE60_RS16775 PF06832 Penicillin-Binding Protein C-terminus Family DOE60_RS16775 PF00905 Penicillin binding protein transpeptidase domain DOE60_RS16780 PF01568 Molydopterin dinucleotide binding domain DOE60_RS16780 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS16780 PF00384 Molybdopterin oxidoreductase DOE60_RS16785 PF13247 4Fe-4S dicluster domain DOE60_RS16785 PF12800 4Fe-4S binding domain DOE60_RS16805 PF04055 Radical SAM superfamily DOE60_RS16815 PF13464 Domain of unknown function (DUF4115) DOE60_RS16820 PF04551 GcpE protein DOE60_RS16825 PF03129 Anticodon binding domain DOE60_RS16825 PF13393 Histidyl-tRNA synthetase DOE60_RS16830 PF09976 Tetratricopeptide repeat-like domain DOE60_RS16835 PF13360 PQQ-like domain DOE60_RS16840 PF01926 50S ribosome-binding GTPase DOE60_RS16840 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DOE60_RS16845 PF07191 zinc-ribbons DOE60_RS16850 PF02369 Bacterial Ig-like domain (group 1) DOE60_RS16850 PF11924 Inverse autotransporter, beta-domain DOE60_RS16850 PF09134 Invasin, domain 3 DOE60_RS16870 PF16485 Protealysin propeptide DOE60_RS16870 PF02868 Thermolysin metallopeptidase, alpha-helical domain DOE60_RS16870 PF01447 Thermolysin metallopeptidase, catalytic domain DOE60_RS16875 PF13742 OB-fold nucleic acid binding domain DOE60_RS16875 PF02601 Exonuclease VII, large subunit DOE60_RS16880 PF00478 IMP dehydrogenase / GMP reductase domain DOE60_RS16880 PF00571 CBS domain DOE60_RS16885 PF02540 NAD synthase DOE60_RS16885 PF00958 GMP synthase C terminal domain DOE60_RS16885 PF00117 Glutamine amidotransferase class-I DOE60_RS16890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS16890 PF03466 LysR substrate binding domain DOE60_RS16895 PF03060 Nitronate monooxygenase DOE60_RS16910 PF11119 Protein of unknown function (DUF2633) DOE60_RS16920 PF05231 MASE1 DOE60_RS16920 PF00563 EAL domain DOE60_RS16925 PF02541 Ppx/GppA phosphatase family DOE60_RS16930 PF17941 Polyphosphate kinase C-terminal domain 1 DOE60_RS16930 PF02503 Polyphosphate kinase middle domain DOE60_RS16930 PF13090 Polyphosphate kinase C-terminal domain 2 DOE60_RS16930 PF13089 Polyphosphate kinase N-terminal domain DOE60_RS16935 PF00551 Formyl transferase DOE60_RS16940 PF00586 AIR synthase related protein, N-terminal domain DOE60_RS16940 PF02769 AIR synthase related protein, C-terminal domain DOE60_RS16955 PF00860 Permease family DOE60_RS16960 PF00308 Bacterial dnaA protein DOE60_RS16965 PF03960 ArsC family DOE60_RS16970 PF01435 Peptidase family M48 DOE60_RS16975 PF01594 AI-2E family transporter DOE60_RS16980 PF17853 GGDEF-like domain DOE60_RS16980 PF13556 PucR C-terminal helix-turn-helix domain DOE60_RS16980 PF05651 Putative sugar diacid recognition DOE60_RS16985 PF02447 GntP family permease DOE60_RS16990 PF02595 Glycerate kinase family DOE60_RS16995 PF00578 AhpC/TSA family DOE60_RS17000 PF01842 ACT domain DOE60_RS17005 PF00701 Dihydrodipicolinate synthetase family DOE60_RS17010 PF06804 NlpB/DapX lipoprotein DOE60_RS17015 PF01259 SAICAR synthetase DOE60_RS17020 PF04228 Putative neutral zinc metallopeptidase DOE60_RS17025 PF05127 Helicase DOE60_RS17025 PF17176 tRNA-binding domain DOE60_RS17025 PF08351 Domain of unknown function (DUF1726) DOE60_RS17025 PF13718 GNAT acetyltransferase 2 DOE60_RS17030 PF13980 Uncharacterised protein family (UPF0370) DOE60_RS17035 PF01546 Peptidase family M20/M25/M40 DOE60_RS17035 PF07687 Peptidase dimerisation domain DOE60_RS17040 PF03960 ArsC family DOE60_RS17050 PF00873 AcrB/AcrD/AcrF family DOE60_RS17055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS17055 PF07730 Histidine kinase DOE60_RS17055 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DOE60_RS17055 PF00672 HAMP domain DOE60_RS17065 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS17065 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DOE60_RS17065 PF13247 4Fe-4S dicluster domain DOE60_RS17070 PF00144 Beta-lactamase DOE60_RS17075 PF00293 NUDIX domain DOE60_RS17080 PF06674 Protein of unknown function (DUF1176) DOE60_RS17090 PF00456 Transketolase, thiamine diphosphate binding domain DOE60_RS17090 PF02779 Transketolase, pyrimidine binding domain DOE60_RS17090 PF02780 Transketolase, C-terminal domain DOE60_RS17095 PF00923 Transaldolase/Fructose-6-phosphate aldolase DOE60_RS17105 PF03949 Malic enzyme, NAD binding domain DOE60_RS17105 PF01515 Phosphate acetyl/butaryl transferase DOE60_RS17105 PF00390 Malic enzyme, N-terminal domain DOE60_RS17110 PF00884 Sulfatase DOE60_RS17115 PF13186 Iron-sulfur cluster-binding domain DOE60_RS17115 PF04055 Radical SAM superfamily DOE60_RS17120 PF00936 BMC domain DOE60_RS17125 PF10662 Ethanolamine utilisation - propanediol utilisation DOE60_RS17130 PF06249 Ethanolamine utilisation protein EutQ DOE60_RS17135 PF01923 Cobalamin adenosyltransferase DOE60_RS17140 PF01515 Phosphate acetyl/butaryl transferase DOE60_RS17145 PF00936 BMC domain DOE60_RS17150 PF03319 Ethanolamine utilisation protein EutN/carboxysome DOE60_RS17155 PF00171 Aldehyde dehydrogenase family DOE60_RS17165 PF00465 Iron-containing alcohol dehydrogenase DOE60_RS17170 PF04346 Ethanolamine utilisation protein, EutH DOE60_RS17175 PF06277 Ethanolamine utilisation protein EutA DOE60_RS17180 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DOE60_RS17185 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DOE60_RS17190 PF00936 BMC domain DOE60_RS17195 PF16365 Ethanolamine utilization protein EutK C-terminus DOE60_RS17195 PF00936 BMC domain DOE60_RS17200 PF12833 Helix-turn-helix domain DOE60_RS17205 PF01218 Coproporphyrinogen III oxidase DOE60_RS17210 PF01520 N-acetylmuramoyl-L-alanine amidase DOE60_RS17215 PF00583 Acetyltransferase (GNAT) family DOE60_RS17220 PF11143 Protein of unknown function (DUF2919) DOE60_RS17225 PF06572 Protein of unknown function (DUF1131) DOE60_RS17230 PF04261 Dyp-type peroxidase family DOE60_RS17245 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS17250 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS17255 PF00005 ABC transporter DOE60_RS17260 PF00291 Pyridoxal-phosphate dependent enzyme DOE60_RS17265 PF17263 Family of unknown function (DUF5329) DOE60_RS17270 PF00117 Glutamine amidotransferase class-I DOE60_RS17275 PF00155 Aminotransferase class I and II DOE60_RS17275 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS17280 PF08543 Phosphomethylpyrimidine kinase DOE60_RS17290 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DOE60_RS17295 PF00391 PEP-utilising enzyme, mobile domain DOE60_RS17295 PF05524 PEP-utilising enzyme, N-terminal DOE60_RS17295 PF02896 PEP-utilising enzyme, TIM barrel domain DOE60_RS17300 PF00381 PTS HPr component phosphorylation site DOE60_RS17305 PF00291 Pyridoxal-phosphate dependent enzyme DOE60_RS17315 PF04354 ZipA, C-terminal FtsZ-binding domain DOE60_RS17320 PF00533 BRCA1 C Terminus (BRCT) domain DOE60_RS17320 PF12826 Helix-hairpin-helix motif DOE60_RS17320 PF01653 NAD-dependent DNA ligase adenylation domain DOE60_RS17320 PF03120 NAD-dependent DNA ligase OB-fold domain DOE60_RS17320 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DOE60_RS17325 PF12843 Putative quorum-sensing-regulated virulence factor DOE60_RS17330 PF13593 SBF-like CPA transporter family (DUF4137) DOE60_RS17335 PF03466 LysR substrate binding domain DOE60_RS17335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS17345 PF03527 RHS protein DOE60_RS17345 PF05593 RHS Repeat DOE60_RS17365 PF03527 RHS protein DOE60_RS17365 PF14220 Domain of unknown function (DUF4329) DOE60_RS17365 PF05593 RHS Repeat DOE60_RS17410 PF00589 Phage integrase family DOE60_RS17410 PF13356 Arm DNA-binding domain DOE60_RS17435 PF00749 tRNA synthetases class I (E and Q), catalytic domain DOE60_RS17440 PF07037 Putative transcription regulator (DUF1323) DOE60_RS17445 PF07037 Putative transcription regulator (DUF1323) DOE60_RS17465 PF05231 MASE1 DOE60_RS17465 PF00563 EAL domain DOE60_RS17470 PF01773 Na+ dependent nucleoside transporter N-terminus DOE60_RS17470 PF07662 Na+ dependent nucleoside transporter C-terminus DOE60_RS17470 PF07670 Nucleoside recognition DOE60_RS17475 PF01566 Natural resistance-associated macrophage protein DOE60_RS17480 PF10697 Protein of unknown function (DUF2502) DOE60_RS17485 PF00248 Aldo/keto reductase family DOE60_RS17490 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE60_RS17490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE60_RS17490 PF00205 Thiamine pyrophosphate enzyme, central domain DOE60_RS17495 PF00654 Voltage gated chloride channel DOE60_RS17500 PF02685 Glucokinase DOE60_RS17505 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE60_RS17510 PF02378 Phosphotransferase system, EIIC DOE60_RS17515 PF01321 Creatinase/Prolidase N-terminal domain DOE60_RS17515 PF00557 Metallopeptidase family M24 DOE60_RS17520 PF05343 M42 glutamyl aminopeptidase DOE60_RS17525 PF00391 PEP-utilising enzyme, mobile domain DOE60_RS17525 PF02896 PEP-utilising enzyme, TIM barrel domain DOE60_RS17525 PF05524 PEP-utilising enzyme, N-terminal DOE60_RS17525 PF00381 PTS HPr component phosphorylation site DOE60_RS17525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE60_RS17530 PF12833 Helix-turn-helix domain DOE60_RS17535 PF00155 Aminotransferase class I and II DOE60_RS17545 PF03279 Bacterial lipid A biosynthesis acyltransferase DOE60_RS17555 PF10810 Protein of unknown function (DUF2545) DOE60_RS17560 PF07690 Major Facilitator Superfamily DOE60_RS17575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS17575 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS17575 PF00672 HAMP domain DOE60_RS17580 PF00072 Response regulator receiver domain DOE60_RS17580 PF14532 Sigma-54 interaction domain DOE60_RS17580 PF02954 Bacterial regulatory protein, Fis family DOE60_RS17585 PF01278 Omptin family DOE60_RS17595 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DOE60_RS17610 PF00589 Phage integrase family DOE60_RS17610 PF13356 Arm DNA-binding domain DOE60_RS17620 PF01226 Formate/nitrite transporter DOE60_RS17625 PF04333 MlaA lipoprotein DOE60_RS17630 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DOE60_RS17635 PF04175 Protein of unknown function (DUF406) DOE60_RS17640 PF00108 Thiolase, N-terminal domain DOE60_RS17640 PF02803 Thiolase, C-terminal domain DOE60_RS17645 PF00378 Enoyl-CoA hydratase/isomerase DOE60_RS17645 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DOE60_RS17645 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DOE60_RS17650 PF00300 Histidine phosphatase superfamily (branch 1) DOE60_RS17655 PF01713 Smr domain DOE60_RS17660 PF05175 Methyltransferase small domain DOE60_RS17665 PF01264 Chorismate synthase DOE60_RS17670 PF03411 Penicillin-insensitive murein endopeptidase DOE60_RS17680 PF04315 Elongation factor P hydroxylase DOE60_RS17685 PF08891 YfcL protein DOE60_RS17690 PF01266 FAD dependent oxidoreductase DOE60_RS17690 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DOE60_RS17695 PF00109 Beta-ketoacyl synthase, N-terminal domain DOE60_RS17695 PF02801 Beta-ketoacyl synthase, C-terminal domain DOE60_RS17710 PF13693 Winged helix-turn-helix DNA-binding DOE60_RS17720 PF07690 Major Facilitator Superfamily DOE60_RS17730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOE60_RS17730 PF11890 Domain of unknown function (DUF3410) DOE60_RS17730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE60_RS17735 PF01118 Semialdehyde dehydrogenase, NAD binding domain DOE60_RS17735 PF02774 Semialdehyde dehydrogenase, dimerisation domain DOE60_RS17740 PF01416 tRNA pseudouridine synthase DOE60_RS17745 PF09335 SNARE associated Golgi protein DOE60_RS17750 PF17848 Acetyl-coA carboxylase zinc finger domain DOE60_RS17750 PF01039 Carboxyl transferase domain DOE60_RS17755 PF02875 Mur ligase family, glutamate ligase domain DOE60_RS17755 PF08245 Mur ligase middle domain DOE60_RS17760 PF05036 Sporulation related domain DOE60_RS17765 PF02674 Colicin V production protein DOE60_RS17770 PF00156 Phosphoribosyl transferase domain DOE60_RS17775 PF00158 Sigma-54 interaction domain DOE60_RS17775 PF02954 Bacterial regulatory protein, Fis family DOE60_RS17775 PF13426 PAS domain DOE60_RS17780 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DOE60_RS17780 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DOE60_RS17785 PF13520 Amino acid permease DOE60_RS17790 PF01168 Alanine racemase, N-terminal domain DOE60_RS17795 PF00324 Amino acid permease DOE60_RS17800 PF02441 Flavoprotein DOE60_RS17810 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE60_RS17815 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE60_RS17820 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS17825 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS17830 PF00005 ABC transporter DOE60_RS17835 PF01370 NAD dependent epimerase/dehydratase family DOE60_RS17835 PF08338 Domain of unknown function (DUF1731) DOE60_RS17845 PF00043 Glutathione S-transferase, C-terminal domain DOE60_RS17845 PF02798 Glutathione S-transferase, N-terminal domain DOE60_RS17850 PF14834 Glutathione S-transferase, C-terminal domain DOE60_RS17850 PF02798 Glutathione S-transferase, N-terminal domain DOE60_RS17855 PF12850 Calcineurin-like phosphoesterase superfamily domain DOE60_RS17860 PF00293 NUDIX domain DOE60_RS17865 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS17875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE60_RS17885 PF03611 PTS system sugar-specific permease component DOE60_RS17890 PF00456 Transketolase, thiamine diphosphate binding domain DOE60_RS17895 PF02779 Transketolase, pyrimidine binding domain DOE60_RS17895 PF02780 Transketolase, C-terminal domain DOE60_RS17895 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DOE60_RS17900 PF03606 C4-dicarboxylate anaerobic carrier DOE60_RS17905 PF01515 Phosphate acetyl/butaryl transferase DOE60_RS17905 PF07085 DRTGG domain DOE60_RS17910 PF00871 Acetokinase family DOE60_RS17915 PF04217 Protein of unknown function, DUF412 DOE60_RS17920 PF03887 YfbU domain DOE60_RS17925 PF13419 Haloacid dehalogenase-like hydrolase DOE60_RS17930 PF02080 TrkA-C domain DOE60_RS17930 PF03600 Citrate transporter DOE60_RS17940 PF00155 Aminotransferase class I and II DOE60_RS17950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS17950 PF03466 LysR substrate binding domain DOE60_RS17960 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DOE60_RS17965 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOE60_RS17970 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DOE60_RS17970 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DOE60_RS17980 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DOE60_RS17980 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DOE60_RS17980 PF10531 SLBB domain DOE60_RS17985 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DOE60_RS17985 PF01568 Molydopterin dinucleotide binding domain DOE60_RS17985 PF00384 Molybdopterin oxidoreductase DOE60_RS17985 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS17990 PF00146 NADH dehydrogenase DOE60_RS17995 PF12838 4Fe-4S dicluster domain DOE60_RS18000 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DOE60_RS18005 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DOE60_RS18010 PF00361 Proton-conducting membrane transporter DOE60_RS18010 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DOE60_RS18015 PF00361 Proton-conducting membrane transporter DOE60_RS18020 PF00361 Proton-conducting membrane transporter DOE60_RS18025 PF01584 CheW-like domain DOE60_RS18025 PF00072 Response regulator receiver domain DOE60_RS18030 PF12706 Beta-lactamase superfamily domain DOE60_RS18035 PF13673 Acetyltransferase (GNAT) domain DOE60_RS18040 PF05957 Bacterial protein of unknown function (DUF883) DOE60_RS18045 PF00425 chorismate binding enzyme DOE60_RS18050 PF16582 Middle domain of thiamine pyrophosphate DOE60_RS18050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE60_RS18050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE60_RS18055 PF12697 Alpha/beta hydrolase family DOE60_RS18060 PF00378 Enoyl-CoA hydratase/isomerase DOE60_RS18065 PF13378 Enolase C-terminal domain-like DOE60_RS18070 PF00501 AMP-binding enzyme DOE60_RS18070 PF13193 AMP-binding enzyme C-terminal domain DOE60_RS18085 PF00892 EamA-like transporter family DOE60_RS18090 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase DOE60_RS18095 PF01522 Polysaccharide deacetylase DOE60_RS18100 PF02911 Formyl transferase, C-terminal domain DOE60_RS18100 PF01370 NAD dependent epimerase/dehydratase family DOE60_RS18100 PF00551 Formyl transferase DOE60_RS18105 PF00535 Glycosyl transferase family 2 DOE60_RS18110 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DOE60_RS18115 PF00300 Histidine phosphatase superfamily (branch 1) DOE60_RS18120 PF00293 NUDIX domain DOE60_RS18125 PF07437 YfaZ precursor DOE60_RS18130 PF00994 Probable molybdopterin binding domain DOE60_RS18145 PF13183 4Fe-4S dicluster domain DOE60_RS18145 PF02754 Cysteine-rich domain DOE60_RS18150 PF00890 FAD binding domain DOE60_RS18155 PF01266 FAD dependent oxidoreductase DOE60_RS18155 PF04324 BFD-like [2Fe-2S] binding domain DOE60_RS18160 PF07690 Major Facilitator Superfamily DOE60_RS18165 PF03009 Glycerophosphoryl diester phosphodiesterase family DOE60_RS18170 PF03466 LysR substrate binding domain DOE60_RS18170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS18175 PF07690 Major Facilitator Superfamily DOE60_RS18180 PF00111 2Fe-2S iron-sulfur cluster binding domain DOE60_RS18185 PF00268 Ribonucleotide reductase, small chain DOE60_RS18190 PF02867 Ribonucleotide reductase, barrel domain DOE60_RS18190 PF00317 Ribonucleotide reductase, all-alpha domain DOE60_RS18190 PF03477 ATP cone domain DOE60_RS18200 PF03989 DNA gyrase C-terminal domain, beta-propeller DOE60_RS18200 PF00521 DNA gyrase/topoisomerase IV, subunit A DOE60_RS18205 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS18205 PF00072 Response regulator receiver domain DOE60_RS18205 PF09456 RcsC Alpha-Beta-Loop (ABL) DOE60_RS18205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS18210 PF00072 Response regulator receiver domain DOE60_RS18210 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS18215 PF16359 RcsD-ABL domain DOE60_RS18215 PF01627 Hpt domain DOE60_RS18215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS18225 PF00267 Gram-negative porin DOE60_RS18230 PF02424 ApbE family DOE60_RS18235 PF02805 Metal binding domain of Ada DOE60_RS18235 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DOE60_RS18235 PF12833 Helix-turn-helix domain DOE60_RS18235 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DOE60_RS18240 PF13532 2OG-Fe(II) oxygenase superfamily DOE60_RS18245 PF00005 ABC transporter DOE60_RS18250 PF00916 Sulfate permease family DOE60_RS18250 PF01740 STAS domain DOE60_RS18255 PF03974 Ecotin DOE60_RS18260 PF00037 4Fe-4S binding domain DOE60_RS18260 PF13187 4Fe-4S dicluster domain DOE60_RS18260 PF12800 4Fe-4S binding domain DOE60_RS18265 PF03927 NapD protein DOE60_RS18270 PF00384 Molybdopterin oxidoreductase DOE60_RS18270 PF01568 Molydopterin dinucleotide binding domain DOE60_RS18270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS18275 PF12800 4Fe-4S binding domain DOE60_RS18275 PF12838 4Fe-4S dicluster domain DOE60_RS18280 PF12801 4Fe-4S binding domain DOE60_RS18280 PF13237 4Fe-4S dicluster domain DOE60_RS18285 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) DOE60_RS18290 PF03264 NapC/NirT cytochrome c family, N-terminal region DOE60_RS18295 PF00005 ABC transporter DOE60_RS18310 PF04995 Heme exporter protein D (CcmD) DOE60_RS18315 PF03100 CcmE DOE60_RS18320 PF01578 Cytochrome C assembly protein DOE60_RS18320 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DOE60_RS18340 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS18340 PF00072 Response regulator receiver domain DOE60_RS18360 PF06183 DinI-like family DOE60_RS18365 PF01797 Transposase IS200 like DOE60_RS18410 PF13979 SopA-like catalytic domain DOE60_RS18410 PF13981 SopA-like central domain DOE60_RS18410 PF13599 Pentapeptide repeats (9 copies) DOE60_RS18420 PF02586 SOS response associated peptidase (SRAP) DOE60_RS18435 PF11893 Domain of unknown function (DUF3413) DOE60_RS18435 PF00884 Sulfatase DOE60_RS18440 PF07208 Protein of unknown function (DUF1414) DOE60_RS18445 PF04245 37-kD nucleoid-associated bacterial protein DOE60_RS18450 PF01386 Ribosomal L25p family DOE60_RS18455 PF00271 Helicase conserved C-terminal domain DOE60_RS18455 PF04851 Type III restriction enzyme, res subunit DOE60_RS18460 PF01479 S4 domain DOE60_RS18460 PF00849 RNA pseudouridylate synthase DOE60_RS18465 PF07690 Major Facilitator Superfamily DOE60_RS18470 PF13989 YejG-like protein DOE60_RS18475 PF00005 ABC transporter DOE60_RS18475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE60_RS18480 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE60_RS18480 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS18485 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS18490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE60_RS18495 PF12792 CSS motif domain associated with EAL DOE60_RS18495 PF00563 EAL domain DOE60_RS18500 PF00877 NlpC/P60 family DOE60_RS18510 PF01569 PAP2 superfamily DOE60_RS18515 PF02492 CobW/HypB/UreG, nucleotide-binding domain DOE60_RS18515 PF07683 Cobalamin synthesis protein cobW C-terminal domain DOE60_RS18520 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS18520 PF00155 Aminotransferase class I and II DOE60_RS18525 PF03264 NapC/NirT cytochrome c family, N-terminal region DOE60_RS18530 PF00384 Molybdopterin oxidoreductase DOE60_RS18530 PF18364 Molybdopterin oxidoreductase N-terminal domain DOE60_RS18530 PF01568 Molydopterin dinucleotide binding domain DOE60_RS18535 PF02613 Nitrate reductase delta subunit DOE60_RS18540 PF08207 Elongation factor P (EF-P) KOW-like domain DOE60_RS18540 PF09285 Elongation factor P, C-terminal DOE60_RS18540 PF01132 Elongation factor P (EF-P) OB domain DOE60_RS18550 PF03692 Putative zinc- or iron-chelating domain DOE60_RS18565 PF07690 Major Facilitator Superfamily DOE60_RS18570 PF00381 PTS HPr component phosphorylation site DOE60_RS18570 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE60_RS18575 PF00294 pfkB family carbohydrate kinase DOE60_RS18580 PF02378 Phosphotransferase system, EIIC DOE60_RS18580 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE60_RS18585 PF01261 Xylose isomerase-like TIM barrel DOE60_RS18590 PF03601 Conserved hypothetical protein 698 DOE60_RS18595 PF03466 LysR substrate binding domain DOE60_RS18595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS18600 PF00324 Amino acid permease DOE60_RS18605 PF07715 TonB-dependent Receptor Plug Domain DOE60_RS18605 PF00593 TonB dependent receptor DOE60_RS18610 PF07690 Major Facilitator Superfamily DOE60_RS18620 PF03313 Serine dehydratase alpha chain DOE60_RS18620 PF03315 Serine dehydratase beta chain DOE60_RS18630 PF00756 Putative esterase DOE60_RS18640 PF01227 GTP cyclohydrolase I DOE60_RS18645 PF04235 Protein of unknown function (DUF418) DOE60_RS18655 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS18660 PF13407 Periplasmic binding protein domain DOE60_RS18665 PF00005 ABC transporter DOE60_RS18670 PF02653 Branched-chain amino acid transport system / permease component DOE60_RS18675 PF01180 Dihydroorotate dehydrogenase DOE60_RS18680 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DOE60_RS18680 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE60_RS18685 PF10808 Protein of unknown function (DUF2542) DOE60_RS18690 PF02698 DUF218 domain DOE60_RS18695 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DOE60_RS18695 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region DOE60_RS18700 PF04172 LrgB-like family DOE60_RS18705 PF03788 LrgA family DOE60_RS18710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS18710 PF03466 LysR substrate binding domain DOE60_RS18715 PF07690 Major Facilitator Superfamily DOE60_RS18720 PF07883 Cupin domain DOE60_RS18725 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOE60_RS18730 PF02798 Glutathione S-transferase, N-terminal domain DOE60_RS18730 PF14497 Glutathione S-transferase, C-terminal domain DOE60_RS18735 PF01494 FAD binding domain DOE60_RS18740 PF01207 Dihydrouridine synthase (Dus) DOE60_RS18750 PF02321 Outer membrane efflux protein DOE60_RS18760 PF09335 SNARE associated Golgi protein DOE60_RS18765 PF04893 Yip1 domain DOE60_RS18775 PF00768 D-alanyl-D-alanine carboxypeptidase DOE60_RS18780 PF09330 D-lactate dehydrogenase, membrane binding DOE60_RS18780 PF01565 FAD binding domain DOE60_RS18785 PF14310 Fibronectin type III-like domain DOE60_RS18785 PF00933 Glycosyl hydrolase family 3 N terminal domain DOE60_RS18785 PF01915 Glycosyl hydrolase family 3 C-terminal domain DOE60_RS18790 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DOE60_RS18795 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS18800 PF00005 ABC transporter DOE60_RS18805 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS18815 PF13411 MerR HTH family regulatory protein DOE60_RS18820 PF07694 5TMR of 5TMR-LYT DOE60_RS18820 PF06580 Histidine kinase DOE60_RS18825 PF00072 Response regulator receiver domain DOE60_RS18825 PF04397 LytTr DNA-binding domain DOE60_RS18830 PF07308 Protein of unknown function (DUF1456) DOE60_RS18835 PF06998 Protein of unknown function (DUF1307) DOE60_RS18845 PF09334 tRNA synthetases class I (M) DOE60_RS18845 PF01588 Putative tRNA binding domain DOE60_RS18850 PF10609 NUBPL iron-transfer P-loop NTPase DOE60_RS18865 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE60_RS18865 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE60_RS18870 PF13953 PapC C-terminal domain DOE60_RS18870 PF13954 PapC N-terminal domain DOE60_RS18870 PF00577 Outer membrane usher protein DOE60_RS18880 PF11776 Nickel/cobalt transporter regulator DOE60_RS18885 PF02110 Hydroxyethylthiazole kinase family DOE60_RS18890 PF08543 Phosphomethylpyrimidine kinase DOE60_RS18895 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS18895 PF07702 UTRA domain DOE60_RS18900 PF00294 pfkB family carbohydrate kinase DOE60_RS18905 PF03747 ADP-ribosylglycohydrolase DOE60_RS18910 PF03825 Nucleoside H+ symporter DOE60_RS18915 PF01791 DeoC/LacD family aldolase DOE60_RS18920 PF00781 Diacylglycerol kinase catalytic domain DOE60_RS18930 PF01136 Peptidase family U32 DOE60_RS18930 PF16325 Peptidase family U32 C-terminal domain DOE60_RS18935 PF00072 Response regulator receiver domain DOE60_RS18935 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS18940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS18940 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS18940 PF00672 HAMP domain DOE60_RS18950 PF00873 AcrB/AcrD/AcrF family DOE60_RS18955 PF00873 AcrB/AcrD/AcrF family DOE60_RS18960 PF13533 Biotin-lipoyl like DOE60_RS18970 PF00012 Hsp70 protein DOE60_RS18980 PF06029 AlkA N-terminal domain DOE60_RS18980 PF00730 HhH-GPD superfamily base excision DNA repair protein DOE60_RS18985 PF08448 PAS fold DOE60_RS18985 PF08447 PAS fold DOE60_RS18985 PF05231 MASE1 DOE60_RS18985 PF00990 Diguanylate cyclase, GGDEF domain DOE60_RS18985 PF00563 EAL domain DOE60_RS18985 PF13426 PAS domain DOE60_RS18990 PF00485 Phosphoribulokinase / Uridine kinase family DOE60_RS18995 PF00692 dUTPase DOE60_RS19000 PF05170 AsmA family DOE60_RS19005 PF03741 Integral membrane protein TerC family DOE60_RS19005 PF00571 CBS domain DOE60_RS19005 PF03471 Transporter associated domain DOE60_RS19015 PF10531 SLBB domain DOE60_RS19015 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DOE60_RS19015 PF02563 Polysaccharide biosynthesis/export protein DOE60_RS19020 PF01451 Low molecular weight phosphotyrosine protein phosphatase DOE60_RS19025 PF02706 Chain length determinant protein DOE60_RS19025 PF13807 G-rich domain on putative tyrosine kinase DOE60_RS19025 PF13614 AAA domain DOE60_RS19030 PF00535 Glycosyl transferase family 2 DOE60_RS19035 PF00132 Bacterial transferase hexapeptide (six repeats) DOE60_RS19040 PF13439 Glycosyltransferase Family 4 DOE60_RS19040 PF00534 Glycosyl transferases group 1 DOE60_RS19050 PF00535 Glycosyl transferase family 2 DOE60_RS19055 PF00132 Bacterial transferase hexapeptide (six repeats) DOE60_RS19060 PF16363 GDP-mannose 4,6 dehydratase DOE60_RS19065 PF01370 NAD dependent epimerase/dehydratase family DOE60_RS19070 PF00293 NUDIX domain DOE60_RS19075 PF00534 Glycosyl transferases group 1 DOE60_RS19075 PF13579 Glycosyl transferase 4-like domain DOE60_RS19080 PF00483 Nucleotidyl transferase DOE60_RS19080 PF01050 Mannose-6-phosphate isomerase DOE60_RS19085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOE60_RS19085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOE60_RS19085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOE60_RS19085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOE60_RS19090 PF02397 Bacterial sugar transferase DOE60_RS19100 PF04230 Polysaccharide pyruvyl transferase DOE60_RS19105 PF00534 Glycosyl transferases group 1 DOE60_RS19105 PF13439 Glycosyltransferase Family 4 DOE60_RS19115 PF00483 Nucleotidyl transferase DOE60_RS19120 PF16363 GDP-mannose 4,6 dehydratase DOE60_RS19125 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DOE60_RS19130 PF08889 WbqC-like protein family DOE60_RS19150 PF00535 Glycosyl transferase family 2 DOE60_RS19165 PF00534 Glycosyl transferases group 1 DOE60_RS19165 PF13477 Glycosyl transferase 4-like DOE60_RS19170 PF01370 NAD dependent epimerase/dehydratase family DOE60_RS19175 PF00483 Nucleotidyl transferase DOE60_RS19180 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DOE60_RS19180 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOE60_RS19190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOE60_RS19190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOE60_RS19195 PF02706 Chain length determinant protein DOE60_RS19200 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DOE60_RS19200 PF01502 Phosphoribosyl-AMP cyclohydrolase DOE60_RS19205 PF00977 Histidine biosynthesis protein DOE60_RS19210 PF00977 Histidine biosynthesis protein DOE60_RS19215 PF00117 Glutamine amidotransferase class-I DOE60_RS19220 PF00475 Imidazoleglycerol-phosphate dehydratase DOE60_RS19225 PF00155 Aminotransferase class I and II DOE60_RS19230 PF00815 Histidinol dehydrogenase DOE60_RS19235 PF08029 HisG, C-terminal domain DOE60_RS19235 PF01634 ATP phosphoribosyltransferase DOE60_RS19245 PF01370 NAD dependent epimerase/dehydratase family DOE60_RS19250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS19250 PF03466 LysR substrate binding domain DOE60_RS19260 PF13520 Amino acid permease DOE60_RS19265 PF00929 Exonuclease DOE60_RS19265 PF08411 Exonuclease C-terminal DOE60_RS19275 PF13979 SopA-like catalytic domain DOE60_RS19275 PF13981 SopA-like central domain DOE60_RS19290 PF12918 TcdB toxin N-terminal helical domain DOE60_RS19290 PF12919 TcdA/TcdB catalytic glycosyltransferase domain DOE60_RS19290 PF11713 Peptidase C80 family DOE60_RS19290 PF01473 Putative cell wall binding repeat DOE60_RS19290 PF12920 TcdA/TcdB pore forming domain DOE60_RS19335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS19335 PF00384 Molybdopterin oxidoreductase DOE60_RS19335 PF01568 Molydopterin dinucleotide binding domain DOE60_RS19340 PF13247 4Fe-4S dicluster domain DOE60_RS19340 PF12800 4Fe-4S binding domain DOE60_RS19345 PF01292 Prokaryotic cytochrome b561 DOE60_RS19350 PF07943 Penicillin-binding protein 5, C-terminal domain DOE60_RS19350 PF00768 D-alanyl-D-alanine carboxypeptidase DOE60_RS19355 PF06445 GyrI-like small molecule binding domain DOE60_RS19360 PF04632 Fusaric acid resistance protein family DOE60_RS19365 PF04363 Protein of unknown function (DUF496) DOE60_RS19370 PF00288 GHMP kinases N terminal domain DOE60_RS19375 PF00871 Acetokinase family DOE60_RS19380 PF10662 Ethanolamine utilisation - propanediol utilisation DOE60_RS19385 PF00936 BMC domain DOE60_RS19390 PF00936 BMC domain DOE60_RS19395 PF13237 4Fe-4S dicluster domain DOE60_RS19395 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DOE60_RS19395 PF13375 RnfC Barrel sandwich hybrid domain DOE60_RS19395 PF10531 SLBB domain DOE60_RS19400 PF00171 Aldehyde dehydrogenase family DOE60_RS19400 PF00465 Iron-containing alcohol dehydrogenase DOE60_RS19405 PF00171 Aldehyde dehydrogenase family DOE60_RS19410 PF01923 Cobalamin adenosyltransferase DOE60_RS19415 PF03319 Ethanolamine utilisation protein EutN/carboxysome DOE60_RS19425 PF06130 Phosphate propanoyltransferase DOE60_RS19435 PF00936 BMC domain DOE60_RS19445 PF18427 DD-reactivating factor swiveling domain DOE60_RS19445 PF08841 Diol dehydratase reactivase ATPase-like domain DOE60_RS19450 PF02287 Dehydratase small subunit DOE60_RS19455 PF02288 Dehydratase medium subunit DOE60_RS19460 PF02286 Dehydratase large subunit DOE60_RS19465 PF00936 BMC domain DOE60_RS19470 PF00936 BMC domain DOE60_RS19475 PF00230 Major intrinsic protein DOE60_RS19480 PF12833 Helix-turn-helix domain DOE60_RS19480 PF10114 Sensory domain found in PocR DOE60_RS19485 PF07685 CobB/CobQ-like glutamine amidotransferase domain DOE60_RS19485 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DOE60_RS19490 PF03186 CobD/Cbib protein DOE60_RS19495 PF02570 Precorrin-8X methylmutase DOE60_RS19500 PF01888 CbiD DOE60_RS19505 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE60_RS19510 PF05175 Methyltransferase small domain DOE60_RS19515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE60_RS19520 PF11761 Cobalamin biosynthesis central region DOE60_RS19520 PF11760 Cobalamin synthesis G N-terminal DOE60_RS19520 PF01890 Cobalamin synthesis G C-terminus DOE60_RS19525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE60_RS19530 PF02571 Precorrin-6x reductase CbiJ/CobK DOE60_RS19535 PF06180 Cobalt chelatase (CbiK) DOE60_RS19540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE60_RS19545 PF01891 Cobalt uptake substrate-specific transmembrane region DOE60_RS19550 PF02553 Cobalt transport protein component CbiN DOE60_RS19555 PF02361 Cobalt transport protein DOE60_RS19560 PF00005 ABC transporter DOE60_RS19565 PF07685 CobB/CobQ-like glutamine amidotransferase domain DOE60_RS19570 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DOE60_RS19575 PF02654 Cobalamin-5-phosphate synthase DOE60_RS19580 PF02277 Phosphoribosyltransferase DOE60_RS19585 PF03734 L,D-transpeptidase catalytic domain DOE60_RS19585 PF17969 L,D-transpeptidase C-terminal domain DOE60_RS19595 PF01554 MatE DOE60_RS19620 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus DOE60_RS19620 PF01048 Phosphorylase superfamily DOE60_RS19625 PF00248 Aldo/keto reductase family DOE60_RS19640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS19640 PF03466 LysR substrate binding domain DOE60_RS19665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS19665 PF03466 LysR substrate binding domain DOE60_RS19670 PF15977 Winged helix-turn-helix DNA binding DOE60_RS19675 PF03797 Autotransporter beta-domain DOE60_RS19675 PF03212 Pertactin DOE60_RS19695 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) DOE60_RS19700 PF06672 Protein of unknown function (DUF1175) DOE60_RS19705 PF01835 MG2 domain DOE60_RS19705 PF07703 Alpha-2-macroglobulin bait region domain DOE60_RS19705 PF00207 Alpha-2-macroglobulin family DOE60_RS19710 PF08486 Stage II sporulation protein DOE60_RS19710 PF10062 Predicted secreted protein (DUF2300) DOE60_RS19715 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) DOE60_RS19720 PF03577 Peptidase family C69 DOE60_RS19730 PF06167 Glucose-regulated metallo-peptidase M90 DOE60_RS19755 PF00717 Peptidase S24-like DOE60_RS19760 PF11799 impB/mucB/samB family C-terminal domain DOE60_RS19760 PF13438 Domain of unknown function (DUF4113) DOE60_RS19760 PF00817 impB/mucB/samB family DOE60_RS19770 PF00313 'Cold-shock' DNA-binding domain DOE60_RS19785 PF00267 Gram-negative porin DOE60_RS19795 PF01966 HD domain DOE60_RS19800 PF00145 C-5 cytosine-specific DNA methylase DOE60_RS19800 PF18284 DNA methylase N-terminal domain DOE60_RS19805 PF03852 DNA mismatch endonuclease Vsr DOE60_RS19810 PF00892 EamA-like transporter family DOE60_RS19815 PF05661 Protein of unknown function (DUF808) DOE60_RS19820 PF09926 Uncharacterized small protein (DUF2158) DOE60_RS19825 PF00990 Diguanylate cyclase, GGDEF domain DOE60_RS19825 PF17151 Periplasmic sensor domain DOE60_RS19835 PF10733 Protein of unknown function (DUF2525) DOE60_RS19840 PF10781 Dextransucrase DSRB DOE60_RS19845 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS19850 PF01311 Bacterial export proteins, family 1 DOE60_RS19855 PF01313 Bacterial export proteins, family 3 DOE60_RS19860 PF00813 FliP family DOE60_RS19865 PF04347 Flagellar biosynthesis protein, FliO DOE60_RS19870 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOE60_RS19870 PF16973 Flagellar motor switch protein FliN N-terminal DOE60_RS19875 PF02154 Flagellar motor switch protein FliM DOE60_RS19875 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOE60_RS19880 PF03748 Flagellar basal body-associated protein FliL DOE60_RS19885 PF02120 Flagellar hook-length control protein FliK DOE60_RS19890 PF02050 Flagellar FliJ protein DOE60_RS19895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE60_RS19895 PF18269 T3SS EscN ATPase C-terminal domain DOE60_RS19900 PF02108 Flagellar assembly protein FliH DOE60_RS19905 PF01706 FliG C-terminal domain DOE60_RS19905 PF14841 FliG middle domain DOE60_RS19905 PF14842 FliG N-terminal domain DOE60_RS19910 PF01514 Secretory protein of YscJ/FliF family DOE60_RS19910 PF08345 Flagellar M-ring protein C-terminal DOE60_RS19915 PF02049 Flagellar hook-basal body complex protein FliE DOE60_RS19925 PF01206 Sulfurtransferase TusA DOE60_RS19930 PF04143 Sulphur transport DOE60_RS19935 PF13987 YedD-like protein DOE60_RS19950 PF00669 Bacterial flagellin N-terminal helical region DOE60_RS19950 PF00700 Bacterial flagellin C-terminal helical region DOE60_RS19950 PF08884 Flagellin D3 domain DOE60_RS19960 PF04539 Sigma-70 region 3 DOE60_RS19960 PF04542 Sigma-70 region 2 DOE60_RS19960 PF04545 Sigma-70, region 4 DOE60_RS19965 PF02899 Phage integrase, N-terminal SAM-like domain DOE60_RS19970 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE60_RS19975 PF00291 Pyridoxal-phosphate dependent enzyme DOE60_RS19980 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS19985 PF00005 ABC transporter DOE60_RS19990 PF03472 Autoinducer binding domain DOE60_RS19990 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS19995 PF10769 Protein of unknown function (DUF2594) DOE60_RS20005 PF00072 Response regulator receiver domain DOE60_RS20005 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS20010 PF01541 GIY-YIG catalytic domain DOE60_RS20010 PF02151 UvrB/uvrC motif DOE60_RS20010 PF08459 UvrC Helix-hairpin-helix N-terminal DOE60_RS20015 PF01066 CDP-alcohol phosphatidyltransferase DOE60_RS20050 PF03695 Uncharacterised protein family (UPF0149) DOE60_RS20050 PF02810 SEC-C motif DOE60_RS20055 PF03222 Tryptophan/tyrosine permease family DOE60_RS20060 PF10678 Protein of unknown function (DUF2492) DOE60_RS20065 PF00210 Ferritin-like domain DOE60_RS20070 PF13992 YecR-like lipoprotein DOE60_RS20075 PF10964 Protein of unknown function (DUF2766) DOE60_RS20085 PF00210 Ferritin-like domain DOE60_RS20100 PF02653 Branched-chain amino acid transport system / permease component DOE60_RS20105 PF02358 Trehalose-phosphatase DOE60_RS20110 PF00982 Glycosyltransferase family 20 DOE60_RS20115 PF00582 Universal stress protein family DOE60_RS20125 PF05247 Flagellar transcriptional activator (FlhD) DOE60_RS20130 PF05280 Flagellar transcriptional activator (FlhC) DOE60_RS20135 PF01618 MotA/TolQ/ExbB proton channel family DOE60_RS20140 PF13677 Membrane MotB of proton-channel complex MotA/MotB DOE60_RS20140 PF00691 OmpA family DOE60_RS20145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS20145 PF02895 Signal transducing histidine kinase, homodimeric domain DOE60_RS20145 PF01627 Hpt domain DOE60_RS20145 PF09078 CheY binding DOE60_RS20145 PF01584 CheW-like domain DOE60_RS20150 PF01584 CheW-like domain DOE60_RS20155 PF00672 HAMP domain DOE60_RS20155 PF02203 Tar ligand binding domain homologue DOE60_RS20155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE60_RS20160 PF01739 CheR methyltransferase, SAM binding domain DOE60_RS20160 PF03705 CheR methyltransferase, all-alpha domain DOE60_RS20165 PF01339 CheB methylesterase DOE60_RS20165 PF00072 Response regulator receiver domain DOE60_RS20170 PF00072 Response regulator receiver domain DOE60_RS20175 PF04344 Chemotaxis phosphatase, CheZ DOE60_RS20180 PF01312 FlhB HrpN YscU SpaS Family DOE60_RS20190 PF06366 Flagellar protein FlhE DOE60_RS20195 PF07470 Glycosyl Hydrolase Family 88 DOE60_RS20200 PF03717 Penicillin-binding Protein dimerisation domain DOE60_RS20200 PF00905 Penicillin binding protein transpeptidase domain DOE60_RS20205 PF00750 tRNA synthetases class I (R) DOE60_RS20205 PF05746 DALR anticodon binding domain DOE60_RS20205 PF03485 Arginyl tRNA synthetase N terminal domain DOE60_RS20210 PF06185 YecM protein DOE60_RS20215 PF03932 CutC family DOE60_RS20225 PF08003 Protein of unknown function (DUF1698) DOE60_RS20230 PF13649 Methyltransferase domain DOE60_RS20235 PF01124 MAPEG family DOE60_RS20240 PF01904 Protein of unknown function DUF72 DOE60_RS20245 PF00857 Isochorismatase family DOE60_RS20250 PF02938 GAD domain DOE60_RS20250 PF00152 tRNA synthetases class II (D, K and N) DOE60_RS20250 PF01336 OB-fold nucleic acid binding domain DOE60_RS20255 PF00293 NUDIX domain DOE60_RS20260 PF01709 Transcriptional regulator DOE60_RS20265 PF02075 Crossover junction endodeoxyribonuclease RuvC DOE60_RS20270 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family DOE60_RS20280 PF07499 RuvA, C-terminal domain DOE60_RS20280 PF01330 RuvA N terminal domain DOE60_RS20285 PF05496 Holliday junction DNA helicase RuvB P-loop domain DOE60_RS20285 PF05491 RuvB C-terminal winged helix domain DOE60_RS20285 PF17864 RuvB AAA lid domain DOE60_RS20290 PF00950 ABC 3 transport family DOE60_RS20295 PF00005 ABC transporter DOE60_RS20300 PF01297 Zinc-uptake complex component A periplasmic DOE60_RS20305 PF01476 LysM domain DOE60_RS20305 PF01551 Peptidase family M23 DOE60_RS20305 PF08525 Opacity-associated protein A N-terminal motif DOE60_RS20315 PF03279 Bacterial lipid A biosynthesis acyltransferase DOE60_RS20320 PF02887 Pyruvate kinase, alpha/beta domain DOE60_RS20320 PF00224 Pyruvate kinase, barrel domain DOE60_RS20325 PF01418 Helix-turn-helix domain, rpiR family DOE60_RS20325 PF01380 SIS domain DOE60_RS20335 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DOE60_RS20335 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DOE60_RS20340 PF00920 Dehydratase family DOE60_RS20345 PF01081 KDPG and KHG aldolase DOE60_RS20350 PF02222 ATP-grasp domain DOE60_RS20355 PF07130 YebG protein DOE60_RS20360 PF13995 YebF-like protein DOE60_RS20365 PF04391 Protein of unknown function (DUF533) DOE60_RS20370 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DOE60_RS20370 PF00326 Prolyl oligopeptidase family DOE60_RS20375 PF00929 Exonuclease DOE60_RS20380 PF00795 Carbon-nitrogen hydrolase DOE60_RS20385 PF06440 DNA polymerase III, theta subunit DOE60_RS20390 PF04234 CopC domain DOE60_RS20395 PF05425 Copper resistance protein D DOE60_RS20400 PF10709 Protein of unknown function (DUF2511) DOE60_RS20435 PF07166 Protein of unknown function (DUF1398) DOE60_RS20440 PF07487 SopE GEF domain DOE60_RS20440 PF05364 Salmonella type III secretion SopE effector N-terminus DOE60_RS20450 PF00149 Calcineurin-like phosphoesterase DOE60_RS20455 PF07358 Protein of unknown function (DUF1482) DOE60_RS20460 PF07351 Protein of unknown function (DUF1480) DOE60_RS20465 PF01189 16S rRNA methyltransferase RsmB/F DOE60_RS20465 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF DOE60_RS20465 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DOE60_RS20470 PF02470 MlaD protein DOE60_RS20475 PF04403 Paraquat-inducible protein A DOE60_RS20480 PF13185 GAF domain DOE60_RS20490 PF03572 Peptidase family S41 DOE60_RS20490 PF17804 Tail specific protease N-terminal domain DOE60_RS20490 PF00595 PDZ domain DOE60_RS20490 PF11818 C-terminal domain of tail specific protease (DUF3340) DOE60_RS20495 PF01435 Peptidase family M48 DOE60_RS20500 PF07690 Major Facilitator Superfamily DOE60_RS20505 PF01614 Bacterial transcriptional regulator DOE60_RS20505 PF09339 IclR helix-turn-helix domain DOE60_RS20510 PF13996 YobH-like protein DOE60_RS20515 PF13998 MgrB protein DOE60_RS20520 PF13974 YebO-like protein DOE60_RS20525 PF10736 Protein of unknown function (DUF2627) DOE60_RS20530 PF00313 'Cold-shock' DNA-binding domain DOE60_RS20535 PF03717 Penicillin-binding Protein dimerisation domain DOE60_RS20535 PF00905 Penicillin binding protein transpeptidase domain DOE60_RS20540 PF13847 Methyltransferase domain DOE60_RS20545 PF02659 Putative manganese efflux pump DOE60_RS20555 PF06173 Protein of unknown function (DUF986) DOE60_RS20560 PF03613 PTS system mannose/fructose/sorbose family IID component DOE60_RS20565 PF03609 PTS system sorbose-specific iic component DOE60_RS20570 PF03610 PTS system fructose IIA component DOE60_RS20570 PF03830 PTS system sorbose subfamily IIB component DOE60_RS20580 PF03471 Transporter associated domain DOE60_RS20580 PF03741 Integral membrane protein TerC family DOE60_RS20590 PF12792 CSS motif domain associated with EAL DOE60_RS20590 PF00563 EAL domain DOE60_RS20595 PF03315 Serine dehydratase beta chain DOE60_RS20595 PF03313 Serine dehydratase alpha chain DOE60_RS20600 PF00293 NUDIX domain DOE60_RS20605 PF04715 Anthranilate synthase component I, N terminal region DOE60_RS20605 PF00425 chorismate binding enzyme DOE60_RS20610 PF03701 Uncharacterised protein family (UPF0181) DOE60_RS20615 PF01042 Endoribonuclease L-PSP DOE60_RS20620 PF13307 Helicase C-terminal domain DOE60_RS20620 PF04851 Type III restriction enzyme, res subunit DOE60_RS20625 PF00814 Glycoprotease family DOE60_RS20630 PF03843 Outer membrane lipoprotein Slp family DOE60_RS20640 PF13193 AMP-binding enzyme C-terminal domain DOE60_RS20640 PF00501 AMP-binding enzyme DOE60_RS20645 PF01612 3'-5' exonuclease DOE60_RS20645 PF00570 HRDC domain DOE60_RS20650 PF03776 Septum formation topological specificity factor MinE DOE60_RS20655 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DOE60_RS20660 PF03775 Septum formation inhibitor MinC, C-terminal domain DOE60_RS20660 PF05209 Septum formation inhibitor MinC, N-terminal domain DOE60_RS20665 PF05166 YcgL domain DOE60_RS20670 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOE60_RS20675 PF03692 Putative zinc- or iron-chelating domain DOE60_RS20685 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system DOE60_RS20695 PF02600 Disulfide bond formation protein DsbB DOE60_RS20700 PF06450 Bacterial Na+/H+ antiporter B (NhaB) DOE60_RS20705 PF07840 FadR C-terminal domain DOE60_RS20705 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS20710 PF04293 SpoVR like protein DOE60_RS20715 PF01266 FAD dependent oxidoreductase DOE60_RS20720 PF00842 Alanine racemase, C-terminal domain DOE60_RS20720 PF01168 Alanine racemase, N-terminal domain DOE60_RS20725 PF02080 TrkA-C domain DOE60_RS20725 PF03471 Transporter associated domain DOE60_RS20725 PF00999 Sodium/hydrogen exchanger family DOE60_RS20730 PF02016 LD-carboxypeptidase N-terminal domain DOE60_RS20730 PF17676 LD-carboxypeptidase C-terminal domain DOE60_RS20735 PF01464 Transglycosylase SLT domain DOE60_RS20740 PF07317 Flagellar regulator YcgR DOE60_RS20740 PF07238 PilZ domain DOE60_RS20745 PF04226 Transglycosylase associated protein DOE60_RS20750 PF01204 Trehalase DOE60_RS20755 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DOE60_RS20755 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOE60_RS20760 PF08173 Membrane bound YbgT-like protein DOE60_RS20765 PF02322 Cytochrome bd terminal oxidase subunit II DOE60_RS20770 PF01654 Cytochrome bd terminal oxidase subunit I DOE60_RS20775 PF04809 HupH hydrogenase expression protein, C-terminal conserved region DOE60_RS20780 PF07449 Hydrogenase-1 expression protein HyaE DOE60_RS20785 PF01750 Hydrogenase maturation protease DOE60_RS20790 PF01292 Prokaryotic cytochrome b561 DOE60_RS20795 PF00374 Nickel-dependent hydrogenase DOE60_RS20800 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOE60_RS20800 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DOE60_RS20810 PF01926 50S ribosome-binding GTPase DOE60_RS20810 PF06071 Protein of unknown function (DUF933) DOE60_RS20815 PF01195 Peptidyl-tRNA hydrolase DOE60_RS20820 PF10762 Protein of unknown function (DUF2583) DOE60_RS20825 PF01740 STAS domain DOE60_RS20825 PF00916 Sulfate permease family DOE60_RS20830 PF14572 Phosphoribosyl synthetase-associated domain DOE60_RS20830 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DOE60_RS20835 PF08544 GHMP kinases C terminal DOE60_RS20835 PF00288 GHMP kinases N terminal domain DOE60_RS20840 PF03550 Outer membrane lipoprotein LolB DOE60_RS20845 PF01488 Shikimate / quinate 5-dehydrogenase DOE60_RS20845 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DOE60_RS20845 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DOE60_RS20850 PF03462 PCRF domain DOE60_RS20850 PF00472 RF-1 domain DOE60_RS20855 PF17827 PrmC N-terminal domain DOE60_RS20855 PF13847 Methyltransferase domain DOE60_RS20860 PF04247 Invasion gene expression up-regulator, SirB DOE60_RS20865 PF13369 Transglutaminase-like superfamily DOE60_RS20870 PF00793 DAHP synthetase I family DOE60_RS20880 PF01699 Sodium/calcium exchanger protein DOE60_RS20885 PF06150 ChaB DOE60_RS20890 PF04752 ChaC-like protein DOE60_RS20895 PF02635 DsrE/DsrF-like family DOE60_RS20900 PF11924 Inverse autotransporter, beta-domain DOE60_RS20905 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS20905 PF00072 Response regulator receiver domain DOE60_RS20910 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DOE60_RS20910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS20910 PF00672 HAMP domain DOE60_RS20910 PF07730 Histidine kinase DOE60_RS20920 PF07690 Major Facilitator Superfamily DOE60_RS20925 PF14710 Respiratory nitrate reductase alpha N-terminal DOE60_RS20925 PF01568 Molydopterin dinucleotide binding domain DOE60_RS20925 PF00384 Molybdopterin oxidoreductase DOE60_RS20930 PF13247 4Fe-4S dicluster domain DOE60_RS20930 PF14711 Respiratory nitrate reductase beta C-terminal DOE60_RS20935 PF02613 Nitrate reductase delta subunit DOE60_RS20940 PF02665 Nitrate reductase gamma subunit DOE60_RS20965 PF00551 Formyl transferase DOE60_RS20965 PF01842 ACT domain DOE60_RS20970 PF02810 SEC-C motif DOE60_RS20975 PF01734 Patatin-like phospholipase DOE60_RS20980 PF00072 Response regulator receiver domain DOE60_RS20985 PF00483 Nucleotidyl transferase DOE60_RS20990 PF00816 H-NS histone family DOE60_RS20995 PF00265 Thymidine kinase DOE60_RS21000 PF00171 Aldehyde dehydrogenase family DOE60_RS21000 PF00465 Iron-containing alcohol dehydrogenase DOE60_RS21005 PF01914 MarC family integral membrane protein DOE60_RS21015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE60_RS21020 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS21025 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS21025 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE60_RS21030 PF00005 ABC transporter DOE60_RS21030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE60_RS21040 PF00520 Ion transport protein DOE60_RS21040 PF00027 Cyclic nucleotide-binding domain DOE60_RS21045 PF04269 Protein of unknown function, DUF440 DOE60_RS21050 PF13396 Phospholipase_D-nuclease N-terminal DOE60_RS21050 PF13091 PLD-like domain DOE60_RS21055 PF03795 YCII-related domain DOE60_RS21060 PF03544 Gram-negative bacterial TonB protein C-terminal DOE60_RS21065 PF03061 Thioesterase superfamily DOE60_RS21070 PF04279 Intracellular septation protein A DOE60_RS21080 PF03692 Putative zinc- or iron-chelating domain DOE60_RS21085 PF03922 OmpW family DOE60_RS21090 PF05067 Manganese containing catalase DOE60_RS21095 PF05974 Domain of unknown function (DUF892) DOE60_RS21100 PF05974 Domain of unknown function (DUF892) DOE60_RS21105 PF10685 Stress-induced bacterial acidophilic repeat motif DOE60_RS21110 PF00290 Tryptophan synthase alpha chain DOE60_RS21115 PF00291 Pyridoxal-phosphate dependent enzyme DOE60_RS21120 PF00218 Indole-3-glycerol phosphate synthase DOE60_RS21120 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DOE60_RS21125 PF00117 Glutamine amidotransferase class-I DOE60_RS21125 PF02885 Glycosyl transferase family, helical bundle domain DOE60_RS21125 PF00591 Glycosyl transferase family, a/b domain DOE60_RS21130 PF00425 chorismate binding enzyme DOE60_RS21130 PF04715 Anthranilate synthase component I, N terminal region DOE60_RS21135 PF08255 Trp-operon Leader Peptide DOE60_RS21140 PF02811 PHP domain DOE60_RS21145 PF01300 Telomere recombination DOE60_RS21150 PF00849 RNA pseudouridylate synthase DOE60_RS21150 PF01479 S4 domain DOE60_RS21155 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DOE60_RS21160 PF00106 short chain dehydrogenase DOE60_RS21165 PF08496 Peptidase family S49 N-terminal DOE60_RS21165 PF01343 Peptidase family S49 DOE60_RS21170 PF10692 Protein of unknown function (DUF2498) DOE60_RS21180 PF01396 Topoisomerase DNA binding C4 zinc finger DOE60_RS21180 PF01751 Toprim domain DOE60_RS21180 PF01131 DNA topoisomerase DOE60_RS21180 PF08272 Topoisomerase I zinc-ribbon-like DOE60_RS21185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS21185 PF03466 LysR substrate binding domain DOE60_RS21205 PF00330 Aconitase family (aconitate hydratase) DOE60_RS21205 PF00694 Aconitase C-terminal domain DOE60_RS21210 PF00925 GTP cyclohydrolase II DOE60_RS21215 PF01569 PAP2 superfamily DOE60_RS21225 PF06305 Lipopolysaccharide assembly protein A domain DOE60_RS21230 PF18073 Rubredoxin metal binding domain DOE60_RS21235 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DOE60_RS21240 PF01253 Translation initiation factor SUI1 DOE60_RS21245 PF05433 Glycine zipper 2TM domain DOE60_RS21250 PF08220 DeoR-like helix-turn-helix domain DOE60_RS21250 PF00455 DeoR C terminal sensor domain DOE60_RS21260 PF00563 EAL domain DOE60_RS21260 PF13426 PAS domain DOE60_RS21260 PF00990 Diguanylate cyclase, GGDEF domain DOE60_RS21270 PF00773 RNB domain DOE60_RS21270 PF17876 Cold shock domain DOE60_RS21270 PF00575 S1 RNA binding domain DOE60_RS21270 PF08206 Ribonuclease B OB domain DOE60_RS21305 PF00005 ABC transporter DOE60_RS21310 PF00005 ABC transporter DOE60_RS21310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE60_RS21315 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE60_RS21315 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS21330 PF02371 Transposase IS116/IS110/IS902 family DOE60_RS21330 PF01548 Transposase DOE60_RS21355 PF05717 IS66 Orf2 like protein DOE60_RS21385 PF13979 SopA-like catalytic domain DOE60_RS21385 PF13981 SopA-like central domain DOE60_RS21400 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS21405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE60_RS21410 PF02954 Bacterial regulatory protein, Fis family DOE60_RS21410 PF00158 Sigma-54 interaction domain DOE60_RS21415 PF04012 PspA/IM30 family DOE60_RS21420 PF06667 Phage shock protein B DOE60_RS21425 PF04024 PspC domain DOE60_RS21430 PF09584 Phage shock protein PspD (Phageshock_PspD) DOE60_RS21435 PF00128 Alpha amylase, catalytic domain DOE60_RS21440 PF01547 Bacterial extracellular solute-binding protein DOE60_RS21445 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS21450 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS21455 PF00107 Zinc-binding dehydrogenase DOE60_RS21460 PF01261 Xylose isomerase-like TIM barrel DOE60_RS21465 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE60_RS21465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE60_RS21470 PF03636 Glycosyl hydrolase family 65, N-terminal domain DOE60_RS21470 PF03633 Glycosyl hydrolase family 65, C-terminal domain DOE60_RS21470 PF03632 Glycosyl hydrolase family 65 central catalytic domain DOE60_RS21475 PF13419 Haloacid dehalogenase-like hydrolase DOE60_RS21480 PF17912 MalK OB fold domain DOE60_RS21480 PF00005 ABC transporter DOE60_RS21480 PF03459 TOBE domain DOE60_RS21485 PF09381 Outer membrane protein G (OmpG) DOE60_RS21490 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS21490 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DOE60_RS21495 PF04317 YcjX-like family, DUF463 DOE60_RS21500 PF05128 Domain of unknown function (DUF697) DOE60_RS21505 PF00158 Sigma-54 interaction domain DOE60_RS21505 PF18024 Helix-turn-helix domain DOE60_RS21510 PF08534 Redoxin DOE60_RS21515 PF13378 Enolase C-terminal domain-like DOE60_RS21515 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOE60_RS21520 PF00246 Zinc carboxypeptidase DOE60_RS21525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE60_RS21535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS21535 PF03466 LysR substrate binding domain DOE60_RS21540 PF00248 Aldo/keto reductase family DOE60_RS21550 PF00440 Bacterial regulatory proteins, tetR family DOE60_RS21565 PF06445 GyrI-like small molecule binding domain DOE60_RS21565 PF12833 Helix-turn-helix domain DOE60_RS21590 PF08534 Redoxin DOE60_RS21610 PF00924 Mechanosensitive ion channel DOE60_RS21615 PF10749 Protein of unknown function (DUF2534) DOE60_RS21620 PF00582 Universal stress protein family DOE60_RS21625 PF00027 Cyclic nucleotide-binding domain DOE60_RS21625 PF13545 Crp-like helix-turn-helix domain DOE60_RS21630 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DOE60_RS21630 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DOE60_RS21635 PF01713 Smr domain DOE60_RS21645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE60_RS21645 PF00672 HAMP domain DOE60_RS21645 PF02203 Tar ligand binding domain homologue DOE60_RS21650 PF01544 CorA-like Mg2+ transporter protein DOE60_RS21660 PF03880 DbpA RNA binding domain DOE60_RS21660 PF00270 DEAD/DEAH box helicase DOE60_RS21660 PF00271 Helicase conserved C-terminal domain DOE60_RS21665 PF01171 PP-loop family DOE60_RS21685 PF00893 Small Multidrug Resistance protein DOE60_RS21690 PF00582 Universal stress protein family DOE60_RS21700 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DOE60_RS21700 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DOE60_RS21700 PF10371 Domain of unknown function DOE60_RS21700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE60_RS21700 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DOE60_RS21710 PF03891 Domain of unknown function (DUF333) DOE60_RS21715 PF03724 META domain DOE60_RS21720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE60_RS21720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOE60_RS21725 PF11739 Dicarboxylate transport DOE60_RS21730 PF13617 YnbE-like lipoprotein DOE60_RS21735 PF07027 Protein of unknown function (DUF1318) DOE60_RS21740 PF01066 CDP-alcohol phosphatidyltransferase DOE60_RS21760 PF02525 Flavodoxin-like fold DOE60_RS21765 PF04408 Helicase associated domain (HA2) DOE60_RS21765 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DOE60_RS21765 PF11898 Domain of unknown function (DUF3418) DOE60_RS21765 PF00270 DEAD/DEAH box helicase DOE60_RS21765 PF00271 Helicase conserved C-terminal domain DOE60_RS21770 PF02698 DUF218 domain DOE60_RS21775 PF01292 Prokaryotic cytochrome b561 DOE60_RS21780 PF08242 Methyltransferase domain DOE60_RS21790 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS21795 PF00005 ABC transporter DOE60_RS21800 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS21805 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE60_RS21815 PF06767 Sif protein DOE60_RS21815 PF00657 GDSL-like Lipase/Acylhydrolase DOE60_RS21830 PF02583 Metal-sensitive transcriptional repressor DOE60_RS21835 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS21835 PF00107 Zinc-binding dehydrogenase DOE60_RS21840 PF00672 HAMP domain DOE60_RS21840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE60_RS21840 PF02203 Tar ligand binding domain homologue DOE60_RS21845 PF03466 LysR substrate binding domain DOE60_RS21845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS21850 PF07063 Domain of unknown function (DUF1338) DOE60_RS21855 PF00135 Carboxylesterase family DOE60_RS21860 PF04349 Periplasmic glucan biosynthesis protein, MdoG DOE60_RS21865 PF04264 YceI-like domain DOE60_RS21870 PF01070 FMN-dependent dehydrogenase DOE60_RS21875 PF00583 Acetyltransferase (GNAT) family DOE60_RS21880 PF00455 DeoR C terminal sensor domain DOE60_RS21880 PF08220 DeoR-like helix-turn-helix domain DOE60_RS21885 PF00834 Ribulose-phosphate 3 epimerase family DOE60_RS21890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE60_RS21895 PF03437 BtpA family DOE60_RS21900 PF03611 PTS system sugar-specific permease component DOE60_RS21905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE60_RS21910 PF05343 M42 glutamyl aminopeptidase DOE60_RS21915 PF13302 Acetyltransferase (GNAT) domain DOE60_RS21920 PF18836 Beta solenoid repeat from YDCK DOE60_RS21925 PF03595 Voltage-dependent anion channel DOE60_RS21930 PF03848 Tellurite resistance protein TehB DOE60_RS21935 PF11769 Protein of unknown function (DUF3313) DOE60_RS21945 PF07883 Cupin domain DOE60_RS21945 PF01381 Helix-turn-helix DOE60_RS21950 PF12392 Collagenase DOE60_RS21950 PF01136 Peptidase family U32 DOE60_RS21955 PF10829 Protein of unknown function (DUF2554) DOE60_RS21960 PF06767 Sif protein DOE60_RS21970 PF01427 D-ala-D-ala dipeptidase DOE60_RS21975 PF00155 Aminotransferase class I and II DOE60_RS21975 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS21980 PF00171 Aldehyde dehydrogenase family DOE60_RS21990 PF10753 Toxin GhoT_OrtT DOE60_RS22010 PF10735 Protein of unknown function (DUF2526) DOE60_RS22015 PF04657 Putative inner membrane exporter, YdcZ DOE60_RS22025 PF16884 N-terminal domain of oxidoreductase DOE60_RS22025 PF00107 Zinc-binding dehydrogenase DOE60_RS22030 PF07729 FCD domain DOE60_RS22030 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS22035 PF07715 TonB-dependent Receptor Plug Domain DOE60_RS22035 PF00593 TonB dependent receptor DOE60_RS22045 PF06004 Bacterial protein of unknown function (DUF903) DOE60_RS22050 PF00324 Amino acid permease DOE60_RS22060 PF02264 LamB porin DOE60_RS22060 PF11471 Maltoporin periplasmic N-terminal extension DOE60_RS22075 PF02311 AraC-like ligand binding domain DOE60_RS22075 PF12833 Helix-turn-helix domain DOE60_RS22080 PF00797 N-acetyltransferase DOE60_RS22090 PF02665 Nitrate reductase gamma subunit DOE60_RS22095 PF02613 Nitrate reductase delta subunit DOE60_RS22100 PF13247 4Fe-4S dicluster domain DOE60_RS22100 PF14711 Respiratory nitrate reductase beta C-terminal DOE60_RS22105 PF00384 Molybdopterin oxidoreductase DOE60_RS22105 PF01568 Molydopterin dinucleotide binding domain DOE60_RS22105 PF14710 Respiratory nitrate reductase alpha N-terminal DOE60_RS22110 PF07690 Major Facilitator Superfamily DOE60_RS22115 PF00440 Bacterial regulatory proteins, tetR family DOE60_RS22120 PF07690 Major Facilitator Superfamily DOE60_RS22130 PF00267 Gram-negative porin DOE60_RS22140 PF00892 EamA-like transporter family DOE60_RS22150 PF01568 Molydopterin dinucleotide binding domain DOE60_RS22150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS22150 PF00384 Molybdopterin oxidoreductase DOE60_RS22155 PF00384 Molybdopterin oxidoreductase DOE60_RS22155 PF01568 Molydopterin dinucleotide binding domain DOE60_RS22155 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS22160 PF12800 4Fe-4S binding domain DOE60_RS22160 PF13247 4Fe-4S dicluster domain DOE60_RS22160 PF09163 Formate dehydrogenase N, transmembrane DOE60_RS22165 PF01292 Prokaryotic cytochrome b561 DOE60_RS22170 PF00107 Zinc-binding dehydrogenase DOE60_RS22170 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS22175 PF03949 Malic enzyme, NAD binding domain DOE60_RS22175 PF00390 Malic enzyme, N-terminal domain DOE60_RS22180 PF08136 30S ribosomal protein subunit S22 family DOE60_RS22185 PF10684 Putative biofilm-dependent modulation protein DOE60_RS22190 PF02566 OsmC-like protein DOE60_RS22195 PF06411 HdeA/HdeB family DOE60_RS22205 PF00128 Alpha amylase, catalytic domain DOE60_RS22205 PF11941 Domain of unknown function (DUF3459) DOE60_RS22205 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOE60_RS22210 PF00128 Alpha amylase, catalytic domain DOE60_RS22220 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS22250 PF01042 Endoribonuclease L-PSP DOE60_RS22255 PF02547 Queuosine biosynthesis protein DOE60_RS22265 PF01494 FAD binding domain DOE60_RS22270 PF07690 Major Facilitator Superfamily DOE60_RS22280 PF07690 Major Facilitator Superfamily DOE60_RS22285 PF00107 Zinc-binding dehydrogenase DOE60_RS22285 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS22290 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS22290 PF07729 FCD domain DOE60_RS22300 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOE60_RS22300 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DOE60_RS22305 PF00374 Nickel-dependent hydrogenase DOE60_RS22310 PF01292 Prokaryotic cytochrome b561 DOE60_RS22315 PF01750 Hydrogenase maturation protease DOE60_RS22320 PF01455 HupF/HypC family DOE60_RS22330 PF04809 HupH hydrogenase expression protein, C-terminal conserved region DOE60_RS22340 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DOE60_RS22345 PF00267 Gram-negative porin DOE60_RS22365 PF08125 Mannitol dehydrogenase C-terminal domain DOE60_RS22365 PF01232 Mannitol dehydrogenase Rossmann domain DOE60_RS22370 PF13811 Domain of unknown function (DUF4186) DOE60_RS22375 PF04960 Glutaminase DOE60_RS22380 PF00171 Aldehyde dehydrogenase family DOE60_RS22385 PF03466 LysR substrate binding domain DOE60_RS22385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS22390 PF07690 Major Facilitator Superfamily DOE60_RS22395 PF01914 MarC family integral membrane protein DOE60_RS22400 PF01047 MarR family DOE60_RS22405 PF12833 Helix-turn-helix domain DOE60_RS22410 PF13999 MarB protein DOE60_RS22415 PF00072 Response regulator receiver domain DOE60_RS22415 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS22425 PF00892 EamA-like transporter family DOE60_RS22430 PF07690 Major Facilitator Superfamily DOE60_RS22445 PF04076 Bacterial OB fold (BOF) protein DOE60_RS22450 PF02464 Competence-damaged protein DOE60_RS22455 PF10685 Stress-induced bacterial acidophilic repeat motif DOE60_RS22465 PF01432 Peptidase family M3 DOE60_RS22470 PF00106 short chain dehydrogenase DOE60_RS22475 PF07729 FCD domain DOE60_RS22475 PF00392 Bacterial regulatory proteins, gntR family DOE60_RS22480 PF14001 YdfZ protein DOE60_RS22485 PF01232 Mannitol dehydrogenase Rossmann domain DOE60_RS22485 PF08125 Mannitol dehydrogenase C-terminal domain DOE60_RS22490 PF00083 Sugar (and other) transporter DOE60_RS22490 PF07690 Major Facilitator Superfamily DOE60_RS22495 PF00107 Zinc-binding dehydrogenase DOE60_RS22495 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS22500 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOE60_RS22500 PF13378 Enolase C-terminal domain-like DOE60_RS22505 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DOE60_RS22510 PF06932 Protein of unknown function (DUF1283) DOE60_RS22515 PF13302 Acetyltransferase (GNAT) domain DOE60_RS22520 PF06788 Uncharacterised protein family (UPF0257) DOE60_RS22525 PF06649 Protein of unknown function (DUF1161) DOE60_RS22530 PF00384 Molybdopterin oxidoreductase DOE60_RS22530 PF01568 Molydopterin dinucleotide binding domain DOE60_RS22530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS22535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS22535 PF01568 Molydopterin dinucleotide binding domain DOE60_RS22535 PF00384 Molybdopterin oxidoreductase DOE60_RS22540 PF13247 4Fe-4S dicluster domain DOE60_RS22540 PF12800 4Fe-4S binding domain DOE60_RS22545 PF04976 DMSO reductase anchor subunit (DmsC) DOE60_RS22550 PF02613 Nitrate reductase delta subunit DOE60_RS22555 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS22560 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DOE60_RS22565 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS22570 PF00571 CBS domain DOE60_RS22570 PF00005 ABC transporter DOE60_RS22575 PF00654 Voltage gated chloride channel DOE60_RS22585 PF00480 ROK family DOE60_RS22595 PF03466 LysR substrate binding domain DOE60_RS22595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS22600 PF07690 Major Facilitator Superfamily DOE60_RS22610 PF00089 Trypsin DOE60_RS22615 PF00893 Small Multidrug Resistance protein DOE60_RS22620 PF00893 Small Multidrug Resistance protein DOE60_RS22630 PF01594 AI-2E family transporter DOE60_RS22635 PF02233 NAD(P) transhydrogenase beta subunit DOE60_RS22640 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DOE60_RS22640 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DOE60_RS22640 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DOE60_RS22645 PF07338 Protein of unknown function (DUF1471) DOE60_RS22650 PF13520 Amino acid permease DOE60_RS22655 PF06942 GlpM protein DOE60_RS22660 PF00072 Response regulator receiver domain DOE60_RS22660 PF00486 Transcriptional regulatory protein, C terminal DOE60_RS22670 PF00267 Gram-negative porin DOE60_RS22675 PF13382 Adenine deaminase C-terminal domain DOE60_RS22675 PF01979 Amidohydrolase family DOE60_RS22680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS22680 PF00672 HAMP domain DOE60_RS22680 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS22685 PF05472 DNA replication terminus site-binding protein (Ter protein) DOE60_RS22690 PF10415 Fumarase C C-terminus DOE60_RS22690 PF00206 Lyase DOE60_RS22695 PF05681 Fumarate hydratase (Fumerase) DOE60_RS22695 PF05683 Fumarase C-terminus DOE60_RS22700 PF01238 Phosphomannose isomerase type I DOE60_RS22705 PF06097 Bacterial protein of unknown function (DUF945) DOE60_RS22710 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DOE60_RS22710 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS22715 PF02378 Phosphotransferase system, EIIC DOE60_RS22715 PF00367 phosphotransferase system, EIIB DOE60_RS22720 PF00155 Aminotransferase class I and II DOE60_RS22725 PF00962 Adenosine/AMP deaminase DOE60_RS22730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE60_RS22730 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE60_RS22740 PF05321 Haemolysin expression modulating protein DOE60_RS22745 PF10754 Protein of unknown function (DUF2569) DOE60_RS22750 PF02508 Rnf-Nqr subunit, membrane protein DOE60_RS22755 PF04060 Putative Fe-S cluster DOE60_RS22760 PF12838 4Fe-4S dicluster domain DOE60_RS22760 PF10531 SLBB domain DOE60_RS22760 PF13375 RnfC Barrel sandwich hybrid domain DOE60_RS22760 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DOE60_RS22765 PF03116 NQR2, RnfD, RnfE family DOE60_RS22770 PF04205 FMN-binding domain DOE60_RS22775 PF02508 Rnf-Nqr subunit, membrane protein DOE60_RS22780 PF10576 Iron-sulfur binding domain of endonuclease III DOE60_RS22780 PF00730 HhH-GPD superfamily base excision DNA repair protein DOE60_RS22780 PF00633 Helix-hairpin-helix motif DOE60_RS22785 PF00854 POT family DOE60_RS22790 PF02798 Glutathione S-transferase, N-terminal domain DOE60_RS22790 PF00043 Glutathione S-transferase, C-terminal domain DOE60_RS22795 PF08543 Phosphomethylpyrimidine kinase DOE60_RS22800 PF00579 tRNA synthetases class I (W and Y) DOE60_RS22800 PF01479 S4 domain DOE60_RS22805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DOE60_RS22805 PF01243 Pyridoxamine 5'-phosphate oxidase DOE60_RS22810 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme DOE60_RS22815 PF03702 Anhydro-N-acetylmuramic acid kinase DOE60_RS22820 PF05433 Glycine zipper 2TM domain DOE60_RS22825 PF01047 MarR family DOE60_RS22830 PF07869 Protein of unknown function (DUF1656) DOE60_RS22835 PF00529 HlyD membrane-fusion protein of T1SS DOE60_RS22835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE60_RS22840 PF04632 Fusaric acid resistance protein family DOE60_RS22845 PF00080 Copper/zinc superoxide dismutase (SODC) DOE60_RS22850 PF00248 Aldo/keto reductase family DOE60_RS22855 PF06945 Protein of unknown function (DUF1289) DOE60_RS22860 PF00440 Bacterial regulatory proteins, tetR family DOE60_RS22860 PF16925 Tetracyclin repressor-like, C-terminal domain DOE60_RS22865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DOE60_RS22870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE60_RS22875 PF00929 Exonuclease DOE60_RS22880 PF00462 Glutaredoxin DOE60_RS22885 PF00877 NlpC/P60 family DOE60_RS22890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DOE60_RS22890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DOE60_RS22905 PF00356 Bacterial regulatory proteins, lacI family DOE60_RS22910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE60_RS22910 PF03466 LysR substrate binding domain DOE60_RS22915 PF07690 Major Facilitator Superfamily DOE60_RS22925 PF00677 Lumazine binding domain DOE60_RS22930 PF01554 MatE DOE60_RS22945 PF01312 FlhB HrpN YscU SpaS Family DOE60_RS22950 PF01311 Bacterial export proteins, family 1 DOE60_RS22955 PF01313 Bacterial export proteins, family 3 DOE60_RS22960 PF00813 FliP family DOE60_RS22965 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOE60_RS22980 PF18269 T3SS EscN ATPase C-terminal domain DOE60_RS22980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE60_RS22985 PF00771 FHIPEP family DOE60_RS22995 PF07201 HrpJ-like domain DOE60_RS23010 PF01514 Secretory protein of YscJ/FliF family DOE60_RS23050 PF05802 Enterobacterial EspB protein DOE60_RS23055 PF04888 Secretion system effector C (SseC) like family DOE60_RS23065 PF03433 EspA-like secreted protein DOE60_RS23085 PF00263 Bacterial type II and III secretion system protein DOE60_RS23085 PF03958 Bacterial type II/III secretion system short domain DOE60_RS23095 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS23095 PF00072 Response regulator receiver domain DOE60_RS23095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS23095 PF09456 RcsC Alpha-Beta-Loop (ABL) DOE60_RS23100 PF00196 Bacterial regulatory proteins, luxR family DOE60_RS23100 PF00072 Response regulator receiver domain DOE60_RS23105 PF13411 MerR HTH family regulatory protein DOE60_RS23110 PF08349 Protein of unknown function (DUF1722) DOE60_RS23115 PF10965 Protein of unknown function (DUF2767) DOE60_RS23125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE60_RS23125 PF00512 His Kinase A (phospho-acceptor) domain DOE60_RS23130 PF13247 4Fe-4S dicluster domain DOE60_RS23135 PF03916 Polysulphide reductase, NrfD DOE60_RS23140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE60_RS23140 PF00384 Molybdopterin oxidoreductase DOE60_RS23140 PF01568 Molydopterin dinucleotide binding domain DOE60_RS23145 PF00294 pfkB family carbohydrate kinase DOE60_RS23155 PF00561 alpha/beta hydrolase fold DOE60_RS23160 PF00324 Amino acid permease DOE60_RS23165 PF00224 Pyruvate kinase, barrel domain DOE60_RS23165 PF02887 Pyruvate kinase, alpha/beta domain DOE60_RS23170 PF04728 Lipoprotein leucine-zipper DOE60_RS23175 PF17969 L,D-transpeptidase C-terminal domain DOE60_RS23175 PF01476 LysM domain DOE60_RS23175 PF03734 L,D-transpeptidase catalytic domain DOE60_RS23180 PF02657 Fe-S metabolism associated domain DOE60_RS23185 PF00266 Aminotransferase class-V DOE60_RS23190 PF01458 Uncharacterized protein family (UPF0051) DOE60_RS23195 PF00005 ABC transporter DOE60_RS23200 PF01458 Uncharacterized protein family (UPF0051) DOE60_RS23205 PF01521 Iron-sulphur cluster biosynthesis DOE60_RS23210 PF00375 Sodium:dicarboxylate symporter family DOE60_RS23215 PF15930 Domain of unknown function DOE60_RS23220 PF03061 Thioesterase superfamily DOE60_RS23225 PF01565 FAD binding domain DOE60_RS23225 PF02913 FAD linked oxidases, C-terminal domain DOE60_RS23225 PF13183 4Fe-4S dicluster domain DOE60_RS23230 PF01594 AI-2E family transporter DOE60_RS23240 PF01487 Type I 3-dehydroquinase DOE60_RS23245 PF00391 PEP-utilising enzyme, mobile domain DOE60_RS23245 PF02896 PEP-utilising enzyme, TIM barrel domain DOE60_RS23245 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DOE60_RS23250 PF03618 Kinase/pyrophosphorylase DOE60_RS23255 PF00793 DAHP synthetase I family DOE60_RS23260 PF10636 Hemin uptake protein hemP DOE60_RS23265 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DOE60_RS23275 PF00877 NlpC/P60 family DOE60_RS23280 PF00005 ABC transporter DOE60_RS23285 PF00255 Glutathione peroxidase DOE60_RS23290 PF01032 FecCD transport family DOE60_RS23295 PF00216 Bacterial DNA-binding protein DOE60_RS23300 PF03484 tRNA synthetase B5 domain DOE60_RS23300 PF03483 B3/4 domain DOE60_RS23300 PF01588 Putative tRNA binding domain DOE60_RS23300 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DOE60_RS23300 PF03147 Ferredoxin-fold anticodon binding domain DOE60_RS23305 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DOE60_RS23305 PF01409 tRNA synthetases class II core domain (F) DOE60_RS23315 PF00453 Ribosomal protein L20 DOE60_RS23320 PF01632 Ribosomal protein L35 DOE60_RS23325 PF00707 Translation initiation factor IF-3, C-terminal domain DOE60_RS23325 PF05198 Translation initiation factor IF-3, N-terminal domain DOE60_RS23330 PF03129 Anticodon binding domain DOE60_RS23330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DOE60_RS23330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOE60_RS23330 PF02824 TGS domain DOE60_RS23335 PF01223 DNA/RNA non-specific endonuclease DOE60_RS23350 PF04338 Protein of unknown function, DUF481 DOE60_RS23355 PF00294 pfkB family carbohydrate kinase DOE60_RS23360 PF11080 Endoribonuclease GhoS DOE60_RS23365 PF03881 Fructosamine kinase DOE60_RS23370 PF14002 YniB-like protein DOE60_RS23375 PF13419 Haloacid dehalogenase-like hydrolase DOE60_RS23380 PF04307 LexA-binding, inner membrane-associated putative hydrolase DOE60_RS23385 PF00375 Sodium:dicarboxylate symporter family DOE60_RS23390 PF10729 Cell division activator CedA DOE60_RS23395 PF00199 Catalase DOE60_RS23395 PF18011 C-terminal domain found in long catalases DOE60_RS23395 PF06628 Catalase-related immune-responsive DOE60_RS23400 PF04794 YdjC-like protein DOE60_RS23405 PF11975 Family 4 glycosyl hydrolase C-terminal domain DOE60_RS23405 PF02056 Family 4 glycosyl hydrolase DOE60_RS23410 PF12833 Helix-turn-helix domain DOE60_RS23410 PF07883 Cupin domain DOE60_RS23415 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DOE60_RS23420 PF02378 Phosphotransferase system, EIIC DOE60_RS23425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE60_RS23430 PF04355 SmpA / OmlA family DOE60_RS23435 PF02540 NAD synthase DOE60_RS23445 PF07813 LTXXQ motif family protein DOE60_RS23455 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DOE60_RS23460 PF04996 Succinylarginine dihydrolase DOE60_RS23465 PF00171 Aldehyde dehydrogenase family DOE60_RS23470 PF04958 Arginine N-succinyltransferase beta subunit DOE60_RS23475 PF00202 Aminotransferase class-III DOE60_RS23480 PF03372 Endonuclease/Exonuclease/phosphatase family DOE60_RS23485 PF00293 NUDIX domain DOE60_RS23490 PF07383 Protein of unknown function (DUF1496) DOE60_RS23495 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOE60_RS23495 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DOE60_RS23500 PF01751 Toprim domain DOE60_RS23500 PF01131 DNA topoisomerase DOE60_RS23505 PF02769 AIR synthase related protein, C-terminal domain DOE60_RS23505 PF00586 AIR synthase related protein, N-terminal domain DOE60_RS23510 PF00881 Nitroreductase family DOE60_RS23515 PF01343 Peptidase family S49 DOE60_RS23520 PF00710 Asparaginase, N-terminal DOE60_RS23520 PF17763 Glutaminase/Asparaginase C-terminal domain DOE60_RS23525 PF00857 Isochorismatase family DOE60_RS23530 PF00083 Sugar (and other) transporter DOE60_RS23535 PF00455 DeoR C terminal sensor domain DOE60_RS23535 PF08220 DeoR-like helix-turn-helix domain DOE60_RS23540 PF00248 Aldo/keto reductase family DOE60_RS23545 PF00294 pfkB family carbohydrate kinase DOE60_RS23550 PF01116 Fructose-bisphosphate aldolase class-II DOE60_RS23555 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS23555 PF00107 Zinc-binding dehydrogenase DOE60_RS23560 PF00083 Sugar (and other) transporter DOE60_RS23565 PF08240 Alcohol dehydrogenase GroES-like domain DOE60_RS23565 PF00107 Zinc-binding dehydrogenase DOE60_RS23575 PF07023 Protein of unknown function (DUF1315) DOE60_RS23580 PF01641 SelR domain DOE60_RS23585 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DOE60_RS23585 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DOE60_RS23595 PF01263 Aldose 1-epimerase DOE60_RS23600 PF00248 Aldo/keto reductase family DOE60_RS23605 PF04055 Radical SAM superfamily DOE60_RS23605 PF13186 Iron-sulfur cluster-binding domain DOE60_RS23610 PF06629 MltA-interacting protein MipA DOE60_RS23615 PF06798 PrkA serine protein kinase C-terminal domain DOE60_RS23615 PF08298 PrkA AAA domain DOE60_RS23620 PF04285 Protein of unknown function (DUF444) DOE60_RS23630 PF00990 Diguanylate cyclase, GGDEF domain DOE60_RS23630 PF17155 Gammaproteobacterial periplasmic sensor domain DOE60_RS23635 PF04073 Aminoacyl-tRNA editing domain DOE60_RS23645 PF04284 Protein of unknown function (DUF441) DOE60_RS23650 PF02311 AraC-like ligand binding domain DOE60_RS23650 PF12833 Helix-turn-helix domain DOE60_RS23655 PF07690 Major Facilitator Superfamily DOE60_RS23660 PF04343 Protein of unknown function, DUF488 DOE60_RS23670 PF03891 Domain of unknown function (DUF333) DOE60_RS23680 PF04226 Transglycosylase associated protein DOE60_RS23695 PF08956 Domain of unknown function (DUF1869) DOE60_RS23700 PF09313 Domain of unknown function (DUF1971) DOE60_RS23710 PF01810 LysE type translocator DOE60_RS23720 PF01817 Chorismate mutase type II DOE60_RS23735 PF00376 MerR family regulatory protein DOE60_RS23735 PF09278 MerR, DNA binding DOE60_RS23745 PF13427 Domain of unknown function (DUF4111) DOE60_RS23745 PF01909 Nucleotidyltransferase domain DOE60_RS23750 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DOE60_RS23765 PF00924 Mechanosensitive ion channel DOE60_RS23770 PF00005 ABC transporter DOE60_RS23775 PF00005 ABC transporter DOE60_RS23780 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS23780 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE60_RS23785 PF00528 Binding-protein-dependent transport system inner membrane component DOE60_RS23790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE60_RS23805 PF01292 Prokaryotic cytochrome b561 DOE60_RS23815 PF00011 Hsp20/alpha crystallin family DOE60_RS23845 PF06316 Enterobacterial Ail/Lom protein DOE60_RS23865 PF00313 'Cold-shock' DNA-binding domain DOE60_RS23870 PF00652 Ricin-type beta-trefoil lectin domain DOE60_RS23875 PF06183 DinI-like family DOE60_RS23880 PF03797 Autotransporter beta-domain DOE60_RS23880 PF02395 Immunoglobulin A1 protease DOE60_RS23890 PF04151 Bacterial pre-peptidase C-terminal domain DOE60_RS23900 PF06291 Bor protein DOE60_RS23905 PF01278 Omptin family DOE60_RS23915 PF12468 Type III secretion system leucine rich repeat protein DOE60_RS23915 PF14496 C-terminal novel E3 ligase, LRR-interacting DOE60_RS23920 PF00180 Isocitrate/isopropylmalate dehydrogenase DOE60_RS23925 PF00849 RNA pseudouridylate synthase DOE60_RS23935 PF00293 NUDIX domain DOE60_RS23945 PF01815 Rop protein DOE60_RS23950 PF05713 Bacterial mobilisation protein (MobC) DOE60_RS23955 PF03432 Relaxase/Mobilisation nuclease domain DOE60_RS23990 PF03389 MobA/MobL family