locus-tag	class	description
CYD39_RS00010	COG0460	homoserine dehydrogenase
CYD39_RS00010	COG0527	aspartate kinase activity
CYD39_RS00020	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CYD39_RS00030	COG1115	amino acid carrier protein
CYD39_RS00040	COG0521	Mo-molybdopterin cofactor biosynthetic process
CYD39_RS00045	COG1584	GPR1 FUN34 yaaH family protein
CYD39_RS00050	COG4735	regulation of single-species biofilm formation
CYD39_RS00115	COG3188	usher protein
CYD39_RS00130	COG3539	Fimbrial protein
CYD39_RS00135	COG3121	Chaperone
CYD39_RS00155	COG0583	DNA-binding transcription factor activity
CYD39_RS00170	COG0737	Belongs to the 5'-nucleotidase family
CYD39_RS00180	COG3119	arylsulfatase activity
CYD39_RS00185	COG0641	radical SAM
CYD39_RS00205	COG0583	DNA-binding transcription factor activity
CYD39_RS00230	COG0196	riboflavin kinase activity
CYD39_RS00245	COG1047	Peptidyl-prolyl cis-trans
CYD39_RS00395	COG0644	oxidoreductase
CYD39_RS00405	COG2271	Major facilitator Superfamily
CYD39_RS00425	COG3119	arylsulfatase activity
CYD39_RS00460	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CYD39_RS00495	COG0417	DNA replication proofreading
CYD39_RS00510	COG0675	Transposase, IS605 OrfB family
CYD39_RS00550	COG0586	Pfam SNARE associated Golgi protein
CYD39_RS00640	COG0768	penicillin binding
CYD39_RS00650	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CYD39_RS00665	COG0772	Belongs to the SEDS family
CYD39_RS00690	COG0849	cell division
CYD39_RS00695	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CYD39_RS00715	COG0494	nUDIX hydrolase
CYD39_RS00720	COG0667	Aldo Keto reductase
CYD39_RS00725	COG0583	DNA-binding transcription factor activity
CYD39_RS00750	COG1459	type II secretion system
CYD39_RS00755	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CYD39_RS00760	COG4969	Belongs to the N-Me-Phe pilin family
CYD39_RS00775	COG3725	Membrane protein required for beta-lactamase induction
CYD39_RS00780	COG3940	Belongs to the glycosyl hydrolase 43 family
CYD39_RS00785	COG2211	Major facilitator Superfamily
CYD39_RS00800	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
CYD39_RS00805	COG0508	dehydrogenase complex catalyzes the overall conversion of
CYD39_RS00810	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CYD39_RS00825	COG3064	Membrane
CYD39_RS00895	COG1349	DNA-binding transcription factor activity
CYD39_RS00915	COG2132	Multicopper oxidase
CYD39_RS00920	COG4993	Dehydrogenase
CYD39_RS00930	COG0288	reversible hydration of carbon dioxide
CYD39_RS00935	COG1131	(ABC) transporter
CYD39_RS00940	COG0842	Transport permease protein
CYD39_RS00945	COG3539	Fimbrial protein
CYD39_RS00965	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS00970	COG0726	polysaccharide deacetylase
CYD39_RS00990	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CYD39_RS01015	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
CYD39_RS01020	COG1643	Atp-dependent helicase
CYD39_RS01025	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CYD39_RS01030	COG4774	siderophore transport
CYD39_RS01035	COG1120	ATPase activity
CYD39_RS01040	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CYD39_RS01060	COG3188	usher protein
CYD39_RS01065	COG3121	Chaperone
CYD39_RS01070	COG3539	Fimbrial protein
CYD39_RS01075	COG3539	Fimbrial protein
CYD39_RS01110	COG2860	membrane
CYD39_RS01135	COG3835	regulator
CYD39_RS01145	COG0477	Major facilitator Superfamily
CYD39_RS01195	COG0575	Belongs to the CDS family
CYD39_RS01255	COG1982	Orn Lys Arg decarboxylase major
CYD39_RS01260	COG0346	lactoylglutathione lyase activity
CYD39_RS01270	COG4568	rho-dependent transcription termination
CYD39_RS01285	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CYD39_RS01290	COG3015	lipoprotein NlpE involved in copper resistance
CYD39_RS01300	COG1720	tRNA m6t6A37 methyltransferase activity
CYD39_RS01325	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CYD39_RS01360	COG0656	L-ascorbic acid biosynthetic process
CYD39_RS01365	COG0583	DNA-binding transcription factor activity
CYD39_RS01370	COG2814	Major facilitator Superfamily
CYD39_RS01380	COG2226	methyltransferase
CYD39_RS01385	COG0741	lytic transglycosylase activity
CYD39_RS01385	COG1388	LysM domain
CYD39_RS01395	COG2226	methyltransferase
CYD39_RS01415	COG0582	viral genome integration into host DNA
CYD39_RS01445	COG4372	Transposase
CYD39_RS01470	COG3209	COG3209 Rhs family protein
CYD39_RS01565	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CYD39_RS01580	COG0121	glutamine amidotransferase
CYD39_RS01585	COG3034	peptidoglycan biosynthetic process
CYD39_RS01595	COG1690	Belongs to the RtcB family
CYD39_RS01600	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CYD39_RS01605	COG2195	Cleaves the N-terminal amino acid of tripeptides
CYD39_RS01645	COG0582	viral genome integration into host DNA
CYD39_RS01665	COG2814	Major facilitator Superfamily
CYD39_RS01680	COG0179	Fumarylacetoacetate (FAA) hydrolase
CYD39_RS01715	COG3188	usher protein
CYD39_RS01720	COG3121	Chaperone
CYD39_RS01725	COG3539	Fimbrial protein
CYD39_RS01740	COG2200	EAL domain
CYD39_RS01785	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CYD39_RS01790	COG2217	Heavy metal translocating P-type atpase
CYD39_RS01795	COG0789	Transcriptional regulator
CYD39_RS01805	COG2814	Major facilitator Superfamily
CYD39_RS01825	COG1271	oxidase subunit
CYD39_RS01830	COG1294	oxidase, subunit
CYD39_RS01850	COG1280	lysine exporter protein (LysE YggA)
CYD39_RS01885	COG0113	porphobilinogen synthase activity
CYD39_RS01900	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CYD39_RS01905	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CYD39_RS01950	COG3706	GGDEF domain
CYD39_RS01955	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CYD39_RS01975	COG4126	flavin adenine dinucleotide binding
CYD39_RS01990	COG1940	carbohydrate kinase activity
CYD39_RS01995	COG2814	Major facilitator Superfamily
CYD39_RS02000	COG0419	ATPase involved in DNA repair
CYD39_RS02005	COG0420	3'-5' exonuclease activity
CYD39_RS02015	COG5002	protein histidine kinase activity
CYD39_RS02030	COG0366	Alpha amylase catalytic
CYD39_RS02035	COG0450	alkyl hydroperoxide reductase
CYD39_RS02055	COG1862	Preprotein translocase
CYD39_RS02065	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CYD39_RS02090	COG4238	major outer membrane lipoprotein
CYD39_RS02100	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CYD39_RS02100	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CYD39_RS02115	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CYD39_RS02120	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CYD39_RS02125	COG0667	Aldo Keto reductase
CYD39_RS02135	COG0142	geranyltranstransferase activity
CYD39_RS02170	COG2188	Transcriptional regulator
CYD39_RS02200	COG2814	Major facilitator Superfamily
CYD39_RS02220	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CYD39_RS02225	COG1845	cytochrome c oxidase, subunit III
CYD39_RS02230	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CYD39_RS02235	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CYD39_RS02240	COG2223	nitrite transmembrane transporter activity
CYD39_RS02245	COG3056	Lipoprotein
CYD39_RS02250	COG0271	Belongs to the BolA IbaG family
CYD39_RS02275	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CYD39_RS02285	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CYD39_RS02290	COG1555	photosystem II stabilization
CYD39_RS02295	COG0824	Thioesterase
CYD39_RS02305	COG4533	DNA binding
CYD39_RS02320	COG1522	sequence-specific DNA binding
CYD39_RS02325	COG1132	(ABC) transporter
CYD39_RS02330	COG1132	(ABC) transporter
CYD39_RS02335	COG0347	Belongs to the P(II) protein family
CYD39_RS02340	COG0004	ammonium transporteR
CYD39_RS02345	COG1946	Acyl-CoA thioesterase
CYD39_RS02350	COG3126	Type III secretion system lipoprotein chaperone (YscW)
CYD39_RS02355	COG3695	enzyme binding
CYD39_RS02365	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CYD39_RS02385	COG0110	maltose O-acetyltransferase activity
CYD39_RS02400	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CYD39_RS02405	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CYD39_RS02410	COG1309	transcriptional regulator
CYD39_RS02415	COG1196	nuclear chromosome segregation
CYD39_RS02415	COG3264	Mechanosensitive ion channel
CYD39_RS02420	COG5464	transposase or invertase
CYD39_RS02430	COG3923	Primosomal replication protein n
CYD39_RS02435	COG2832	Protein of unknown function (DUF454)
CYD39_RS02480	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CYD39_RS02485	COG4651	solute:proton antiporter activity
CYD39_RS02485	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CYD39_RS02490	COG2223	nitrite transmembrane transporter activity
CYD39_RS02505	COG3735	TraB family
CYD39_RS02515	COG2217	Heavy metal translocating P-type atpase
CYD39_RS02525	COG1585	Membrane protein implicated in regulation of membrane protease activity
CYD39_RS02530	COG0330	HflC and HflK could
CYD39_RS02535	COG4619	ABC transporter
CYD39_RS02540	COG0390	transport system, permease component
CYD39_RS02545	COG3118	belongs to the thioredoxin family
CYD39_RS02550	COG0300	oxidoreductase activity
CYD39_RS02555	COG2755	lipolytic protein G-D-S-L family
CYD39_RS02560	COG4181	ATPase activity
CYD39_RS02565	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CYD39_RS02575	COG1464	Belongs to the NlpA lipoprotein family
CYD39_RS02610	COG3960	tartronate-semialdehyde synthase activity
CYD39_RS02615	COG3622	Belongs to the hyi family
CYD39_RS02620	COG2084	Dehydrogenase
CYD39_RS02630	COG1953	Uracil, thiamine, allantoin
CYD39_RS02640	COG2233	PERMEase
CYD39_RS02645	COG1929	Belongs to the glycerate kinase type-1 family
CYD39_RS02650	COG3257	ureidoglycine aminohydrolase activity
CYD39_RS02655	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CYD39_RS02660	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
CYD39_RS02665	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CYD39_RS02670	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CYD39_RS02680	COG0549	Belongs to the carbamate kinase family
CYD39_RS02685	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CYD39_RS02690	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CYD39_RS02700	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CYD39_RS02720	COG1988	membrane-bound metal-dependent
CYD39_RS02725	COG2501	S4 domain
CYD39_RS02815	COG0463	Glycosyl transferase, family 2
CYD39_RS02820	COG2246	polysaccharide biosynthetic process
CYD39_RS02830	COG5002	protein histidine kinase activity
CYD39_RS02840	COG2207	Transcriptional regulator
CYD39_RS02845	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CYD39_RS02855	COG3059	membrane
CYD39_RS02865	COG1113	amino acid transport
CYD39_RS02870	COG0668	transmembrane transport
CYD39_RS02885	COG2315	Protein conserved in bacteria
CYD39_RS02910	COG2977	Belongs to the P-Pant transferase superfamily
CYD39_RS02915	COG4771	TonB-dependent receptor
CYD39_RS02920	COG2382	esterase
CYD39_RS02925	COG3251	PFAM MbtH domain protein
CYD39_RS02930	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CYD39_RS02930	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
CYD39_RS02935	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
CYD39_RS02940	COG1120	ATPase activity
CYD39_RS02945	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CYD39_RS02950	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CYD39_RS02960	COG4592	Periplasmic binding protein
CYD39_RS02965	COG1169	isochorismate synthase
CYD39_RS02970	COG1021	2,3-dihydroxybenzoate-AMP ligase
CYD39_RS02975	COG3433	isochorismatase activity
CYD39_RS02975	COG1535	isochorismatase
CYD39_RS02980	COG1028	Short-chain dehydrogenase reductase Sdr
CYD39_RS02990	COG1966	Carbon starvation protein
CYD39_RS02995	COG2879	small protein
CYD39_RS03000	COG0371	Dehydrogenase
CYD39_RS03005	COG0436	Aminotransferase
CYD39_RS03010	COG1475	DNA binding
CYD39_RS03015	COG3969	phosphoadenosine phosphosulfate
CYD39_RS03020	COG0583	DNA-binding transcription factor activity
CYD39_RS03025	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CYD39_RS03045	COG0243	molybdopterin cofactor binding
CYD39_RS03065	COG1063	alcohol dehydrogenase
CYD39_RS03070	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CYD39_RS03075	COG3719	Belongs to the RNase T2 family
CYD39_RS03080	COG0471	metal ion transport
CYD39_RS03085	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
CYD39_RS03095	COG3051	citrate lyase alpha subunit
CYD39_RS03100	COG2301	Belongs to the HpcH HpaI aldolase family
CYD39_RS03110	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
CYD39_RS03115	COG3290	protein histidine kinase activity
CYD39_RS03120	COG4565	transcriptional regulatory protein
CYD39_RS03125	COG3069	C4-dicarboxylate transmembrane transporter activity
CYD39_RS03145	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CYD39_RS03160	COG0583	DNA-binding transcription factor activity
CYD39_RS03175	COG1686	Belongs to the peptidase S11 family
CYD39_RS03185	COG0772	Belongs to the SEDS family
CYD39_RS03190	COG0768	penicillin binding
CYD39_RS03200	COG0799	negative regulation of ribosome biogenesis
CYD39_RS03220	COG1466	dna polymerase III delta subunit
CYD39_RS03250	COG3290	protein histidine kinase activity
CYD39_RS03250	COG3829	transcription factor binding
CYD39_RS03255	COG2888	peptidyl-tyrosine sulfation
CYD39_RS03270	COG2214	Heat shock protein DnaJ domain protein
CYD39_RS03280	COG2214	Heat shock protein DnaJ domain protein
CYD39_RS03285	COG0443	Heat shock 70 kDa protein
CYD39_RS03300	COG1126	abc transporter atp-binding protein
CYD39_RS03305	COG0765	amino acid transport
CYD39_RS03310	COG0765	amino acid transport
CYD39_RS03335	COG1702	phosphate starvation-inducible protein PhoH
CYD39_RS03345	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CYD39_RS03395	COG0367	asparagine synthase
CYD39_RS03400	COG0647	UMP catabolic process
CYD39_RS03405	COG1846	Transcriptional regulator
CYD39_RS03405	COG1940	carbohydrate kinase activity
CYD39_RS03410	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CYD39_RS03450	COG1053	succinate dehydrogenase
CYD39_RS03455	COG0583	DNA-binding transcription factor activity
CYD39_RS03460	COG0735	belongs to the Fur family
CYD39_RS03475	COG0596	Alpha beta hydrolase
CYD39_RS03485	COG0033	Phosphoglucomutase
CYD39_RS03495	COG0531	amino acid
CYD39_RS03500	COG1982	Orn Lys Arg decarboxylase major
CYD39_RS03510	COG0745	RESPONSE REGULATOR receiver
CYD39_RS03515	COG2205	protein histidine kinase activity
CYD39_RS03560	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CYD39_RS03565	COG1984	allophanate hydrolase subunit 2
CYD39_RS03580	COG3180	Ammonia monooxygenase
CYD39_RS03595	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CYD39_RS03610	COG0567	Dehydrogenase, E1 component
CYD39_RS03615	COG0508	dehydrogenase complex catalyzes the overall conversion of
CYD39_RS03625	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CYD39_RS03630	COG1271	oxidase subunit
CYD39_RS03635	COG1294	oxidase, subunit
CYD39_RS03640	COG4890	Cyd operon protein YbgT
CYD39_RS03645	COG3790	cyd operon protein YbgE
CYD39_RS03650	COG0824	Thioesterase
CYD39_RS03655	COG0811	peptide transport
CYD39_RS03660	COG0848	biopolymer transport protein
CYD39_RS03665	COG3064	Membrane
CYD39_RS03675	COG2885	chlorophyll binding
CYD39_RS03680	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
CYD39_RS03720	COG1230	cation diffusion facilitator family transporter
CYD39_RS03730	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CYD39_RS03735	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CYD39_RS03735	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CYD39_RS03745	COG0583	DNA-binding transcription factor activity
CYD39_RS03750	COG0583	DNA-binding transcription factor activity
CYD39_RS03755	COG0490	domain, Protein
CYD39_RS03755	COG0471	metal ion transport
CYD39_RS03765	COG0511	ligase activity, forming carbon-carbon bonds
CYD39_RS03765	COG5016	pyruvate
CYD39_RS03780	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CYD39_RS03785	COG1120	ATPase activity
CYD39_RS03795	COG2017	converts alpha-aldose to the beta-anomer
CYD39_RS03820	COG1119	ATPase activity
CYD39_RS03825	COG3585	molybdate ion transport
CYD39_RS03825	COG2005	Transcriptional regulator
CYD39_RS03835	COG0725	ABC transporter, periplasmic molybdate-binding protein
CYD39_RS03840	COG4149	molybdate abc transporter
CYD39_RS03850	COG0561	phosphatase activity
CYD39_RS03860	COG4677	pectinesterase activity
CYD39_RS03890	COG1881	PFAM PEBP family protein
CYD39_RS03945	COG0521	Mo-molybdopterin cofactor biosynthetic process
CYD39_RS03955	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CYD39_RS03965	COG0670	Belongs to the BI1 family
CYD39_RS03985	COG0392	lysyltransferase activity
CYD39_RS03990	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CYD39_RS03995	COG3568	Endonuclease Exonuclease Phosphatase
CYD39_RS04005	COG0842	Transport permease protein
CYD39_RS04010	COG0842	Transport permease protein
CYD39_RS04015	COG1131	(ABC) transporter
CYD39_RS04025	COG1309	transcriptional regulator
CYD39_RS04030	COG0513	Belongs to the DEAD box helicase family
CYD39_RS04045	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CYD39_RS04055	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CYD39_RS04065	COG0668	transmembrane transport
CYD39_RS04070	COG1126	abc transporter atp-binding protein
CYD39_RS04075	COG0765	amino acid transport
CYD39_RS04080	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CYD39_RS04095	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CYD39_RS04100	COG2194	sulfuric ester hydrolase activity
CYD39_RS04115	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CYD39_RS04120	COG1376	ErfK ybiS ycfS ynhG family protein
CYD39_RS04125	COG0488	(ABC) transporter
CYD39_RS04145	COG0561	phosphatase activity
CYD39_RS04150	COG1882	Formate acetyltransferase
CYD39_RS04155	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CYD39_RS04180	COG0747	negative chemotaxis
CYD39_RS04205	COG2133	pyrroloquinoline quinone binding
CYD39_RS04210	COG0625	glutathione transferase activity
CYD39_RS04215	COG1686	Belongs to the peptidase S11 family
CYD39_RS04220	COG1349	DNA-binding transcription factor activity
CYD39_RS04225	COG0671	phosphoesterase, PA-phosphatase related
CYD39_RS04230	COG2814	Major facilitator Superfamily
CYD39_RS04235	COG0561	phosphatase activity
CYD39_RS04240	COG0738	Major facilitator superfamily
CYD39_RS04245	COG3226	Transcriptional regulator
CYD39_RS04290	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CYD39_RS04295	COG3842	ATPase activity
CYD39_RS04300	COG1176	ABC-type spermidine putrescine transport system, permease component I
CYD39_RS04305	COG1177	transmembrane transport
CYD39_RS04335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CYD39_RS04340	COG4160	amino acid transport
CYD39_RS04345	COG4215	(ABC) transporter
CYD39_RS04350	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CYD39_RS04355	COG1126	abc transporter atp-binding protein
CYD39_RS04370	COG3023	N-Acetylmuramoyl-L-alanine amidase
CYD39_RS04375	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CYD39_RS04380	COG0702	epimerase
CYD39_RS04385	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
CYD39_RS04390	COG0028	Belongs to the TPP enzyme family
CYD39_RS04395	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CYD39_RS04405	COG2431	L-lysine efflux transmembrane transporter activity
CYD39_RS04410	COG3593	DNA synthesis involved in DNA repair
CYD39_RS04415	COG2990	Protein conserved in bacteria
CYD39_RS04420	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CYD39_RS04425	COG0577	efflux transmembrane transporter activity
CYD39_RS04425	COG1136	(ABC) transporter
CYD39_RS04430	COG1278	Cold shock
CYD39_RS04440	COG0542	response to heat
CYD39_RS04485	COG1335	isochorismatase
CYD39_RS04495	COG0583	DNA-binding transcription factor activity
CYD39_RS04515	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CYD39_RS04520	COG4988	ABC transporter
CYD39_RS04525	COG0492	ferredoxin-NADP+ reductase activity
CYD39_RS04545	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CYD39_RS04555	COG0243	molybdopterin cofactor binding
CYD39_RS04560	COG0437	4 iron, 4 sulfur cluster binding
CYD39_RS04565	COG3302	dmso reductase anchor subunit
CYD39_RS04575	COG0531	amino acid
CYD39_RS04580	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CYD39_RS04595	COG1882	Formate acetyltransferase
CYD39_RS04600	COG2116	formate transmembrane transporter activity
CYD39_RS04605	COG1944	ATP diphosphatase activity
CYD39_RS04610	COG2323	membrane
CYD39_RS04625	COG0501	Belongs to the peptidase M48B family
CYD39_RS04635	COG0539	negative regulation of cytoplasmic translation
CYD39_RS04645	COG0658	competence protein
CYD39_RS04645	COG2333	competence protein COMEC
CYD39_RS04660	COG3214	Protein conserved in bacteria
CYD39_RS04675	COG3173	Aminoglycoside phosphotransferase
CYD39_RS04680	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CYD39_RS04685	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CYD39_RS04695	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
CYD39_RS04705	COG2989	Protein conserved in bacteria
CYD39_RS04710	COG3108	Peptidase M15
CYD39_RS04715	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CYD39_RS04725	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CYD39_RS04735	COG1522	sequence-specific DNA binding
CYD39_RS04750	COG1115	amino acid carrier protein
CYD39_RS04760	COG0308	aminopeptidase N
CYD39_RS04775	COG3217	Mosc domain protein beta barrel domain protein
CYD39_RS04775	COG0633	Ferredoxin
CYD39_RS04785	COG0488	(ABC) transporter
CYD39_RS04790	COG2995	paraquat-inducible protein a
CYD39_RS04795	COG3008	intermembrane lipid transfer
CYD39_RS04795	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CYD39_RS04800	COG3009	Protein conserved in bacteria
CYD39_RS04805	COG3130	regulation of translation
CYD39_RS04815	COG1067	ATP-dependent peptidase activity
CYD39_RS04835	COG3070	regulator of competence-specific genes
CYD39_RS04840	COG1289	transmembrane transporter activity
CYD39_RS04845	COG3304	Inner membrane component domain
CYD39_RS04850	COG0210	DNA helicase
CYD39_RS04865	COG1832	CoA-binding protein
CYD39_RS04880	COG1881	PFAM PEBP family protein
CYD39_RS04900	COG0670	Belongs to the BI1 family
CYD39_RS04950	COG2205	protein histidine kinase activity
CYD39_RS04955	COG0745	RESPONSE REGULATOR receiver
CYD39_RS04970	COG2368	4-hydroxyphenylacetate
CYD39_RS04975	COG1846	Transcriptional regulator
CYD39_RS04985	COG1012	belongs to the aldehyde dehydrogenase family
CYD39_RS04990	COG3384	dioxygenase
CYD39_RS05000	COG3971	2-oxopent-4-enoate hydratase activity
CYD39_RS05045	COG4232	protein-disulfide reductase activity
CYD39_RS05050	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CYD39_RS05050	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CYD39_RS05055	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CYD39_RS05075	COG3729	General stress protein
CYD39_RS05080	COG1309	transcriptional regulator
CYD39_RS05100	COG1702	phosphate starvation-inducible protein PhoH
CYD39_RS05160	COG3157	Type VI secretion system effector, Hcp
CYD39_RS05250	COG3209	COG3209 Rhs family protein
CYD39_RS05290	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CYD39_RS05300	COG1418	mRNA catabolic process
CYD39_RS05305	COG0270	DNA (cytosine-5-)-methyltransferase activity
CYD39_RS05310	COG3727	T/G mismatch-specific endonuclease activity
CYD39_RS05315	COG0697	spore germination
CYD39_RS05320	COG2354	Protein conserved in bacteria
CYD39_RS05325	COG5475	Uncharacterized small protein (DUF2158)
CYD39_RS05430	COG0425	Belongs to the sulfur carrier protein TusA family
CYD39_RS05490	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CYD39_RS05500	COG0765	amino acid transport
CYD39_RS05505	COG1126	abc transporter atp-binding protein
CYD39_RS05510	COG2197	response regulator
CYD39_RS05525	COG2197	response regulator
CYD39_RS05570	COG3012	SEC-C Motif Domain Protein
CYD39_RS05570	COG3318	Belongs to the UPF0149 family
CYD39_RS05575	COG0814	amino acid
CYD39_RS05585	COG1528	Iron-storage protein
CYD39_RS05600	COG1528	Iron-storage protein
CYD39_RS05705	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
CYD39_RS05720	COG3102	Protein conserved in bacteria
CYD39_RS05740	COG3788	relative of glutathione S-transferase, MAPEG superfamily
CYD39_RS05745	COG1801	Protein of unknown function DUF72
CYD39_RS05750	COG1335	isochorismatase
CYD39_RS05760	COG0494	nUDIX hydrolase
CYD39_RS05795	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CYD39_RS05805	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
CYD39_RS05810	COG0739	heme binding
CYD39_RS05815	COG1560	Kdo2-lipid A biosynthetic process
CYD39_RS05825	COG1737	Transcriptional regulator
CYD39_RS05830	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CYD39_RS05835	COG0129	dihydroxy-acid dehydratase activity
CYD39_RS05840	COG0800	Aldolase
CYD39_RS05850	COG3141	response to X-ray
CYD39_RS05860	COG2979	Protein of unknown function (DUF533)
CYD39_RS05865	COG1770	oligopeptidase
CYD39_RS05870	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CYD39_RS05875	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CYD39_RS05885	COG2372	response to copper ion
CYD39_RS05890	COG1276	copper resistance
CYD39_RS05950	COG5499	transcription regulator containing HTH domain
CYD39_RS05955	COG4680	protein conserved in bacteria
CYD39_RS05985	COG5562	phage envelope protein
CYD39_RS06025	COG3008	intermembrane lipid transfer
CYD39_RS06030	COG2995	paraquat-inducible protein a
CYD39_RS06035	COG1956	GAF domain-containing protein
CYD39_RS06055	COG2814	Major facilitator Superfamily
CYD39_RS06060	COG1414	Transcriptional regulator
CYD39_RS06090	COG0768	penicillin binding
CYD39_RS06095	COG2226	methyltransferase
CYD39_RS06110	COG3716	PTS system mannose fructose sorbose family IID component
CYD39_RS06115	COG3715	PTS system
CYD39_RS06120	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYD39_RS06120	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS06125	COG1253	flavin adenine dinucleotide binding
CYD39_RS06130	COG2200	EAL domain
CYD39_RS06135	COG1760	l-serine dehydratase
CYD39_RS06155	COG0251	oxidation-reduction process
CYD39_RS06160	COG1199	ATP-dependent helicase activity
CYD39_RS06170	COG3065	identical protein binding
CYD39_RS06180	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
CYD39_RS06190	COG2894	cell division
CYD39_RS06205	COG0179	Fumarylacetoacetate (FAA) hydrolase
CYD39_RS06245	COG2719	SpoVR family
CYD39_RS06265	COG1619	proteins homologs of microcin C7 resistance protein MccF
CYD39_RS06290	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CYD39_RS06300	COG1294	oxidase, subunit
CYD39_RS06305	COG1271	oxidase subunit
CYD39_RS06310	COG1773	rubredoxin
CYD39_RS06315	COG1999	signal sequence binding
CYD39_RS06320	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CYD39_RS06325	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
CYD39_RS06335	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CYD39_RS06355	COG0012	GTP binding
CYD39_RS06370	COG0659	secondary active sulfate transmembrane transporter activity
CYD39_RS06420	COG0387	Pfam Sodium calcium exchanger
CYD39_RS06425	COG4572	Cation transport regulator
CYD39_RS06430	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
CYD39_RS06435	COG4932	domain protein
CYD39_RS06440	COG2197	response regulator
CYD39_RS06445	COG3850	Histidine kinase
CYD39_RS06450	COG2223	nitrite transmembrane transporter activity
CYD39_RS06455	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CYD39_RS06460	COG1140	nitrate reductase beta subunit
CYD39_RS06465	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CYD39_RS06470	COG2181	nitrate reductase activity
CYD39_RS06515	COG0788	formyltetrahydrofolate deformylase activity
CYD39_RS06525	COG1752	Esterase of the alpha-beta hydrolase superfamily
CYD39_RS06530	COG0745	RESPONSE REGULATOR receiver
CYD39_RS06535	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CYD39_RS06550	COG1012	belongs to the aldehyde dehydrogenase family
CYD39_RS06550	COG1454	alcohol dehydrogenase
CYD39_RS06555	COG2095	MarC family integral membrane protein
CYD39_RS06585	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CYD39_RS06605	COG2350	Protein conserved in bacteria
CYD39_RS06630	COG0727	PFAM Uncharacterised protein family (UPF0153)
CYD39_RS06635	COG3047	cAMP biosynthetic process
CYD39_RS06640	COG3546	catalase activity
CYD39_RS06645	COG3685	Protein conserved in bacteria
CYD39_RS06650	COG3685	Protein conserved in bacteria
CYD39_RS06655	COG3729	General stress protein
CYD39_RS06695	COG0009	L-threonylcarbamoyladenylate synthase
CYD39_RS06710	COG1028	Short-chain dehydrogenase reductase Sdr
CYD39_RS06715	COG0616	signal peptide processing
CYD39_RS06755	COG0671	phosphoesterase, PA-phosphatase related
CYD39_RS06760	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
CYD39_RS06765	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CYD39_RS06785	COG1349	DNA-binding transcription factor activity
CYD39_RS06795	COG5001	Diguanylate cyclase
CYD39_RS06805	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CYD39_RS06805	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CYD39_RS06860	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CYD39_RS06865	COG1842	Phage shock protein A
CYD39_RS06875	COG1983	PspC domain protein
CYD39_RS06885	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CYD39_RS06890	COG3106	COG3106 Predicted ATPase
CYD39_RS06910	COG4948	Mandelate Racemase Muconate Lactonizing
CYD39_RS06915	COG2866	Carboxypeptidase
CYD39_RS06920	COG4166	transmembrane transport
CYD39_RS06930	COG0583	DNA-binding transcription factor activity
CYD39_RS06935	COG0656	L-ascorbic acid biosynthetic process
CYD39_RS06940	COG1028	Short-chain dehydrogenase reductase Sdr
CYD39_RS06945	COG1309	transcriptional regulator
CYD39_RS06980	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CYD39_RS07000	COG0668	transmembrane transport
CYD39_RS07005	COG3182	Iron-regulated membrane protein
CYD39_RS07025	COG2840	Smr protein MutS2
CYD39_RS07030	COG0840	transmembrane signaling receptor activity
CYD39_RS07045	COG0513	Belongs to the DEAD box helicase family
CYD39_RS07070	COG2076	Multidrug Resistance protein
CYD39_RS07080	COG0674	pyruvate-flavodoxin oxidoreductase activity
CYD39_RS07080	COG1013	pyruvate-flavodoxin oxidoreductase activity
CYD39_RS07080	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CYD39_RS07080	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CYD39_RS07090	COG3042	response to heat
CYD39_RS07095	COG3187	Heat shock protein
CYD39_RS07100	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CYD39_RS07105	COG2911	Protein conserved in bacteria
CYD39_RS07115	COG3784	Protein of unknown function (DUF1318)
CYD39_RS07130	COG1643	Atp-dependent helicase
CYD39_RS07135	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CYD39_RS07140	COG3038	cytochrome b561
CYD39_RS07145	COG0500	methyltransferase
CYD39_RS07155	COG0765	amino acid transport
CYD39_RS07165	COG0765	amino acid transport
CYD39_RS07170	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CYD39_RS07205	COG0840	transmembrane signaling receptor activity
CYD39_RS07210	COG0583	DNA-binding transcription factor activity
CYD39_RS07215	COG5383	Protein conserved in bacteria
CYD39_RS07220	COG2272	Belongs to the type-B carboxylesterase lipase family
CYD39_RS07225	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
CYD39_RS07230	COG2353	YceI-like domain
CYD39_RS07240	COG1063	alcohol dehydrogenase
CYD39_RS07245	COG2271	Major facilitator Superfamily
CYD39_RS07250	COG1028	Short-chain dehydrogenase reductase Sdr
CYD39_RS07265	COG1349	DNA-binding transcription factor activity
CYD39_RS07270	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CYD39_RS07275	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS07280	COG0434	BtpA family
CYD39_RS07285	COG3775	system Galactitol-specific IIC component
CYD39_RS07290	COG3414	Phosphotransferase system galactitol-specific IIB component
CYD39_RS07300	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CYD39_RS07305	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CYD39_RS07310	COG1275	C4-dicarboxylate transporter malic acid transport protein
CYD39_RS07315	COG0500	methyltransferase
CYD39_RS07325	COG3135	benzoate transporter
CYD39_RS07330	COG1396	sequence-specific DNA binding
CYD39_RS07335	COG0826	peptidase U32
CYD39_RS07360	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
CYD39_RS07365	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CYD39_RS07405	COG3238	Protein conserved in bacteria
CYD39_RS07415	COG2130	NADP-dependent
CYD39_RS07425	COG4772	TonB-dependent receptor
CYD39_RS07460	COG2181	nitrate reductase activity
CYD39_RS07465	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CYD39_RS07470	COG1140	nitrate reductase beta subunit
CYD39_RS07475	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CYD39_RS07515	COG0437	4 iron, 4 sulfur cluster binding
CYD39_RS07520	COG2864	formate dehydrogenase
CYD39_RS07525	COG1064	alcohol dehydrogenase
CYD39_RS07545	COG1764	response to oxidative stress
CYD39_RS07560	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CYD39_RS07575	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CYD39_RS07580	COG1757	Na H antiporter
CYD39_RS07585	COG1609	Transcriptional regulator
CYD39_RS07645	COG0251	oxidation-reduction process
CYD39_RS07650	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CYD39_RS07675	COG2271	Major facilitator Superfamily
CYD39_RS07680	COG1063	alcohol dehydrogenase
CYD39_RS07685	COG2186	Transcriptional regulator
CYD39_RS07695	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CYD39_RS07700	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CYD39_RS07725	COG1773	rubredoxin
CYD39_RS07750	COG3781	membrane
CYD39_RS07765	COG1012	belongs to the aldehyde dehydrogenase family
CYD39_RS07770	COG0583	DNA-binding transcription factor activity
CYD39_RS07805	COG2814	Major facilitator Superfamily
CYD39_RS07815	COG3111	PFAM Bacterial OB fold (BOF) protein
CYD39_RS07820	COG1546	Belongs to the CinA family
CYD39_RS07825	COG3729	General stress protein
CYD39_RS07840	COG4221	oxidoreductase activity
CYD39_RS07845	COG1802	Transcriptional regulator
CYD39_RS07855	COG0246	Mannitol dehydrogenase
CYD39_RS07860	COG0477	Major facilitator Superfamily
CYD39_RS07865	COG1063	alcohol dehydrogenase
CYD39_RS07885	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CYD39_RS07900	COG0243	molybdopterin cofactor binding
CYD39_RS07905	COG0243	molybdopterin cofactor binding
CYD39_RS07910	COG0437	4 iron, 4 sulfur cluster binding
CYD39_RS07915	COG3302	dmso reductase anchor subunit
CYD39_RS07955	COG1940	carbohydrate kinase activity
CYD39_RS07960	COG0583	DNA-binding transcription factor activity
CYD39_RS07965	COG2814	Major facilitator Superfamily
CYD39_RS07975	COG3591	Belongs to the peptidase S1B family
CYD39_RS07995	COG0628	permease
CYD39_RS08000	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CYD39_RS08005	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CYD39_RS08015	COG0531	amino acid
CYD39_RS08020	COG3136	membrane protein required for alginate biosynthesis
CYD39_RS08025	COG0745	RESPONSE REGULATOR receiver
CYD39_RS08035	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CYD39_RS08040	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
CYD39_RS08045	COG2205	protein histidine kinase activity
CYD39_RS08070	COG5339	Protein conserved in bacteria
CYD39_RS08080	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CYD39_RS08090	COG0673	inositol 2-dehydrogenase activity
CYD39_RS08140	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CYD39_RS08150	COG0625	glutathione transferase activity
CYD39_RS08170	COG3895	Periplasmic Protein
CYD39_RS08195	COG1566	PFAM secretion protein HlyD family protein
CYD39_RS08210	COG4989	oxidoreductase activity
CYD39_RS08215	COG3313	Fe-S protein
CYD39_RS08220	COG1309	transcriptional regulator
CYD39_RS08225	COG1902	pentaerythritol trinitrate reductase activity
CYD39_RS08240	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CYD39_RS08245	COG0791	NLP P60 protein
CYD39_RS08265	COG0583	DNA-binding transcription factor activity
CYD39_RS08270	COG2814	Major facilitator Superfamily
CYD39_RS08275	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CYD39_RS08280	COG0307	riboflavin synthase, alpha
CYD39_RS08460	COG0789	Transcriptional regulator
CYD39_RS08465	COG3272	Protein of unknown function (DUF1722)
CYD39_RS08500	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CYD39_RS08510	COG2267	carboxylic ester hydrolase activity
CYD39_RS08515	COG0531	amino acid
CYD39_RS08530	COG4238	major outer membrane lipoprotein
CYD39_RS08535	COG1376	ErfK ybiS ycfS ynhG family protein
CYD39_RS08550	COG0719	Fe-S assembly protein
CYD39_RS08555	COG0396	ATPase activity
CYD39_RS08560	COG0719	Fe-S assembly protein
CYD39_RS08565	COG0316	Belongs to the HesB IscA family
CYD39_RS08570	COG1823	symporter activity
CYD39_RS08580	COG2050	protein possibly involved in aromatic compounds catabolism
CYD39_RS08585	COG0277	FAD linked oxidase domain protein
CYD39_RS08585	COG0247	lactate metabolic process
CYD39_RS08590	COG0628	permease
CYD39_RS08605	COG0738	Major facilitator superfamily
CYD39_RS08610	COG2271	Major facilitator Superfamily
CYD39_RS08625	COG4670	ketone body catabolic process
CYD39_RS08630	COG1960	acyl-CoA dehydrogenase activity
CYD39_RS08635	COG2207	Transcriptional regulator
CYD39_RS08635	COG1917	Cupin 2, conserved barrel domain protein
CYD39_RS08640	COG2086	electron transfer activity
CYD39_RS08645	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CYD39_RS08650	COG0644	oxidoreductase
CYD39_RS08655	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
CYD39_RS08660	COG0318	PFAM AMP-dependent synthetase and ligase
CYD39_RS08665	COG0574	Belongs to the PEP-utilizing enzyme family
CYD39_RS08665	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CYD39_RS08680	COG4256	Hemin uptake protein
CYD39_RS08695	COG0791	NLP P60 protein
CYD39_RS08705	COG0386	Belongs to the glutathione peroxidase family
CYD39_RS08785	COG3137	Salt-induced outer membrane protein
CYD39_RS08790	COG1105	Belongs to the carbohydrate kinase PfkB family
CYD39_RS08800	COG3001	Fructosamine kinase
CYD39_RS08810	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CYD39_RS08815	COG1988	membrane-bound metal-dependent
CYD39_RS08820	COG1823	symporter activity
CYD39_RS08830	COG0753	catalase activity
CYD39_RS08840	COG1486	melibiose metabolic process
CYD39_RS08845	COG2169	Transcriptional regulator
CYD39_RS08845	COG1917	Cupin 2, conserved barrel domain protein
CYD39_RS08850	COG1447	Phosphotransferase system cellobiose-specific component IIA
CYD39_RS08855	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CYD39_RS08860	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CYD39_RS08865	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CYD39_RS08880	COG3678	ATP-independent chaperone mediated protein folding
CYD39_RS08915	COG0494	nUDIX hydrolase
CYD39_RS08940	COG0778	Nitroreductase
CYD39_RS08945	COG0616	signal peptide processing
CYD39_RS08950	COG0252	asparaginase activity
CYD39_RS08955	COG1335	isochorismatase
CYD39_RS08960	COG3139	Protein of unknown function (DUF1315)
CYD39_RS08980	COG0656	L-ascorbic acid biosynthetic process
CYD39_RS08985	COG0641	radical SAM
CYD39_RS08990	COG3713	MltA-interacting MipA family protein
CYD39_RS08995	COG2766	serine protein kinase
CYD39_RS09010	COG2199	diguanylate cyclase activity
CYD39_RS09015	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CYD39_RS09030	COG2207	Transcriptional regulator
CYD39_RS09035	COG2807	transmembrane transport
CYD39_RS09040	COG3189	MarR family transcriptional regulator
CYD39_RS09050	COG3042	response to heat
CYD39_RS09060	COG2261	transglycosylase associated protein
CYD39_RS09075	COG3615	Tellurite resistance protein tehB
CYD39_RS09085	COG1605	Chorismate mutase
CYD39_RS09095	COG0789	Transcriptional regulator
CYD39_RS09110	COG3443	Belongs to the bacterial solute-binding protein 9 family
CYD39_RS09125	COG0668	transmembrane transport
CYD39_RS09130	COG1124	(ABC) transporter
CYD39_RS09160	COG3038	cytochrome b561
CYD39_RS09170	COG0071	Belongs to the small heat shock protein (HSP20) family
CYD39_RS09260	COG0538	isocitrate dehydrogenase activity
CYD39_RS09290	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CYD39_RS09305	COG2850	peptidyl-arginine hydroxylation
CYD39_RS09335	COG1177	transmembrane transport
CYD39_RS09355	COG4591	ABC-type transport system involved in lipoprotein release permease component
CYD39_RS09360	COG1136	(ABC) transporter
CYD39_RS09365	COG4591	ABC-type transport system involved in lipoprotein release permease component
CYD39_RS09370	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CYD39_RS09375	COG1376	ErfK ybiS ycfS ynhG family protein
CYD39_RS09375	COG1388	LysM domain
CYD39_RS09385	COG1309	transcriptional regulator
CYD39_RS09390	COG3134	Outer membrane lipoprotein
CYD39_RS09395	COG1252	NADH dehydrogenase
CYD39_RS09420	COG5633	Lipoprotein
CYD39_RS09425	COG0537	adenosine 5'-monophosphoramidase activity
CYD39_RS09430	COG4773	Receptor
CYD39_RS09440	COG0084	hydrolase, TatD family'
CYD39_RS09445	COG0470	DNA polymerase III
CYD39_RS09455	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CYD39_RS09460	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CYD39_RS09465	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CYD39_RS09525	COG1530	ribonuclease E activity
CYD39_RS09615	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CYD39_RS09625	COG2999	glutathione oxidoreductase activity
CYD39_RS09660	COG3038	cytochrome b561
CYD39_RS09675	COG1560	Kdo2-lipid A biosynthetic process
CYD39_RS09690	COG5645	(Lipo)protein
CYD39_RS09695	COG2943	transferase activity, transferring hexosyl groups
CYD39_RS09710	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CYD39_RS09765	COG3381	protein complex oligomerization
CYD39_RS09850	COG0582	viral genome integration into host DNA
CYD39_RS09975	COG0582	viral genome integration into host DNA
CYD39_RS10000	COG0582	viral genome integration into host DNA
CYD39_RS10045	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CYD39_RS10070	COG0534	Mate efflux family protein
CYD39_RS10100	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CYD39_RS10105	COG0640	Transcriptional regulator
CYD39_RS10115	COG0583	DNA-binding transcription factor activity
CYD39_RS10125	COG0697	spore germination
CYD39_RS10135	COG1982	Orn Lys Arg decarboxylase major
CYD39_RS10175	COG1122	ATPase activity
CYD39_RS10305	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
CYD39_RS10320	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
CYD39_RS10335	COG1012	belongs to the aldehyde dehydrogenase family
CYD39_RS10335	COG1454	alcohol dehydrogenase
CYD39_RS10340	COG4656	Part of a membrane complex involved in electron transport
CYD39_RS10375	COG1289	transmembrane transporter activity
CYD39_RS10415	COG2925	Exonuclease
CYD39_RS10420	COG0531	amino acid
CYD39_RS10430	COG0583	DNA-binding transcription factor activity
CYD39_RS10435	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CYD39_RS10550	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CYD39_RS10595	COG2327	Polysaccharide pyruvyl transferase
CYD39_RS10600	COG2244	polysaccharide biosynthetic process
CYD39_RS10605	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CYD39_RS10620	COG0297	glycogen (starch) synthase activity
CYD39_RS10625	COG1051	belongs to the nudix hydrolase family
CYD39_RS10630	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CYD39_RS10635	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
CYD39_RS10640	COG0110	maltose O-acetyltransferase activity
CYD39_RS10645	COG1216	Glycosyl transferase, family 2
CYD39_RS10655	COG0438	transferase activity, transferring glycosyl groups
CYD39_RS10660	COG1045	serine acetyltransferase
CYD39_RS10665	COG0463	Glycosyl transferase, family 2
CYD39_RS10685	COG1253	flavin adenine dinucleotide binding
CYD39_RS10690	COG2982	Protein involved in outer membrane biogenesis
CYD39_RS10705	COG3447	MASE1 domain protein
CYD39_RS10705	COG5002	protein histidine kinase activity
CYD39_RS10705	COG5001	Diguanylate cyclase
CYD39_RS10710	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CYD39_RS10715	COG0443	Heat shock 70 kDa protein
CYD39_RS10745	COG2205	protein histidine kinase activity
CYD39_RS10750	COG0745	RESPONSE REGULATOR receiver
CYD39_RS10840	COG0826	peptidase U32
CYD39_RS10865	COG1830	Aldolase
CYD39_RS10870	COG2211	Major facilitator Superfamily
CYD39_RS10875	COG1397	ADP-ribosylglycohydrolase
CYD39_RS10880	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CYD39_RS10885	COG2188	Transcriptional regulator
CYD39_RS10900	COG5455	response to cobalt ion
CYD39_RS10905	COG3539	Fimbrial protein
CYD39_RS10910	COG3188	usher protein
CYD39_RS10915	COG3121	Chaperone
CYD39_RS10940	COG4808	Protein conserved in bacteria
CYD39_RS10950	COG4807	Protein conserved in bacteria
CYD39_RS10960	COG3275	phosphorelay sensor kinase activity
CYD39_RS10975	COG1174	glycine betaine transport
CYD39_RS10980	COG1125	glycine betaine transport
CYD39_RS10985	COG1174	glycine betaine transport
CYD39_RS10990	COG1732	Glycine betaine
CYD39_RS11000	COG0277	FAD linked oxidase domain protein
CYD39_RS11005	COG1686	Belongs to the peptidase S11 family
CYD39_RS11015	COG0586	Pfam SNARE associated Golgi protein
CYD39_RS11020	COG1028	Short-chain dehydrogenase reductase Sdr
CYD39_RS11025	COG1538	Outer membrane efflux protein
CYD39_RS11040	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CYD39_RS11045	COG0625	glutathione transferase activity
CYD39_RS11060	COG2271	Major facilitator Superfamily
CYD39_RS11075	COG1346	cytolysis
CYD39_RS11085	COG2949	membrane
CYD39_RS11095	COG0493	'glutamate synthase
CYD39_RS11125	COG2311	Membrane
CYD39_RS11145	COG1760	l-serine dehydratase
CYD39_RS11150	COG0560	Phosphoserine phosphatase
CYD39_RS11155	COG2271	Major facilitator Superfamily
CYD39_RS11160	COG4771	TonB-dependent receptor
CYD39_RS11165	COG0833	amino acid
CYD39_RS11170	COG0583	DNA-binding transcription factor activity
CYD39_RS11175	COG2855	membrane
CYD39_RS11185	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CYD39_RS11185	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CYD39_RS11185	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CYD39_RS11190	COG1105	Belongs to the carbohydrate kinase PfkB family
CYD39_RS11225	COG0523	cobalamin synthesis protein
CYD39_RS11230	COG0671	phosphoesterase, PA-phosphatase related
CYD39_RS11235	COG0791	NLP P60 protein
CYD39_RS11240	COG2200	EAL domain
CYD39_RS11245	COG4166	transmembrane transport
CYD39_RS11250	COG4174	ABC transporter (Permease)
CYD39_RS11255	COG4239	(ABC) transporter, permease
CYD39_RS11260	COG4172	Belongs to the ABC transporter superfamily
CYD39_RS11270	COG2814	Major facilitator Superfamily
CYD39_RS11280	COG1061	Type III restriction enzyme res subunit
CYD39_RS11330	COG2197	response regulator
CYD39_RS11335	COG3088	subunit of a heme lyase
CYD39_RS11335	COG4235	cytochrome complex assembly
CYD39_RS11345	COG1138	Cytochrome C-type biogenesis protein
CYD39_RS11355	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CYD39_RS11360	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CYD39_RS11365	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CYD39_RS11370	COG4133	protoheme IX ABC transporter activity
CYD39_RS11375	COG3005	denitrification pathway
CYD39_RS11380	COG3043	anaerobic respiration
CYD39_RS11385	COG0348	domain, Protein
CYD39_RS11390	COG0437	4 iron, 4 sulfur cluster binding
CYD39_RS11400	COG3062	negative regulation of establishment of protein localization
CYD39_RS11405	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
CYD39_RS11405	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CYD39_RS11415	COG4615	Cyclic peptide transporter
CYD39_RS11440	COG0642	Histidine kinase
CYD39_RS11440	COG2198	Histidine kinase
CYD39_RS11460	COG4948	Mandelate Racemase Muconate Lactonizing
CYD39_RS11490	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CYD39_RS11495	COG2814	Major facilitator Superfamily
CYD39_RS11500	COG0583	DNA-binding transcription factor activity
CYD39_RS11505	COG0584	glycerophosphoryl diester phosphodiesterase
CYD39_RS11510	COG2271	Major facilitator Superfamily
CYD39_RS11515	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CYD39_RS11525	COG0247	lactate metabolic process
CYD39_RS11530	COG5160	protein modification by small protein removal
CYD39_RS11545	COG2271	Major facilitator Superfamily
CYD39_RS11555	COG1414	Transcriptional regulator
CYD39_RS11645	COG1169	isochorismate synthase
CYD39_RS11650	COG4575	ribosome binding
CYD39_RS11655	COG2153	protein acetylation
CYD39_RS11665	COG0835	chemotaxis
CYD39_RS11665	COG0784	Response regulator, receiver
CYD39_RS11670	COG2304	oxidoreductase activity
CYD39_RS11685	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CYD39_RS11690	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CYD39_RS11700	COG0839	Belongs to the complex I subunit 6 family
CYD39_RS11750	COG0583	DNA-binding transcription factor activity
CYD39_RS11755	COG0436	Aminotransferase
CYD39_RS11770	COG0471	metal ion transport
CYD39_RS11770	COG0490	domain, Protein
CYD39_RS11775	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CYD39_RS11800	COG1288	antiporter activity
CYD39_RS11805	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CYD39_RS11810	COG3959	Transketolase, thiamine diphosphate binding domain
CYD39_RS11815	COG3037	sugar-specific permease SgaT UlaA
CYD39_RS11825	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS11830	COG1609	Transcriptional regulator
CYD39_RS11840	COG0622	Phosphoesterase
CYD39_RS11845	COG0625	glutathione transferase activity
CYD39_RS11850	COG0625	glutathione transferase activity
CYD39_RS11855	COG1090	epimerase
CYD39_RS11890	COG0833	amino acid
CYD39_RS11895	COG3457	Alanine racemase
CYD39_RS11900	COG0531	amino acid
CYD39_RS11910	COG3829	transcription factor binding
CYD39_RS11915	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CYD39_RS11920	COG1286	toxin biosynthetic process
CYD39_RS11925	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
CYD39_RS11930	COG0285	dihydrofolate synthase activity
CYD39_RS11940	COG0586	Pfam SNARE associated Golgi protein
CYD39_RS11950	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CYD39_RS11995	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CYD39_RS12010	COG3101	peptidyl-lysine hydroxylation
CYD39_RS12015	COG0730	response to heat
CYD39_RS12040	COG2062	phosphohistidine phosphatase, SixA
CYD39_RS12055	COG3691	Protein conserved in bacteria
CYD39_RS12070	COG2116	formate transmembrane transporter activity
CYD39_RS12110	COG1560	Kdo2-lipid A biosynthetic process
CYD39_RS12120	COG0436	Aminotransferase
CYD39_RS12135	COG3961	Belongs to the TPP enzyme family
CYD39_RS12140	COG0667	Aldo Keto reductase
CYD39_RS12155	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CYD39_RS12160	COG2200	EAL domain
CYD39_RS12160	COG2199	diguanylate cyclase activity
CYD39_RS12175	COG3415	Transposase
CYD39_RS12180	COG3415	Transposase
CYD39_RS12210	COG0583	DNA-binding transcription factor activity
CYD39_RS12220	COG2211	Major facilitator Superfamily
CYD39_RS12225	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
CYD39_RS12235	COG0583	DNA-binding transcription factor activity
CYD39_RS12240	COG0385	Bile acid
CYD39_RS12245	COG3530	Putative quorum-sensing-regulated virulence factor
CYD39_RS12270	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS12325	COG4208	sulfate ABC transporter
CYD39_RS12345	COG2837	iron assimilation
CYD39_RS12480	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CYD39_RS12490	COG5342	invasion associated locus B
CYD39_RS12505	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CYD39_RS12505	COG0493	'glutamate synthase
CYD39_RS12510	COG3850	Histidine kinase
CYD39_RS12515	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CYD39_RS12525	COG1393	Belongs to the ArsC family
CYD39_RS12545	COG2321	neutral zinc metallopeptidase
CYD39_RS12555	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CYD39_RS12565	COG2716	regulation of RNA biosynthetic process
CYD39_RS12570	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CYD39_RS12575	COG1929	Belongs to the glycerate kinase type-1 family
CYD39_RS12580	COG2610	gluconate transmembrane transporter activity
CYD39_RS12585	COG3835	regulator
CYD39_RS12590	COG0628	permease
CYD39_RS12600	COG1393	Belongs to the ArsC family
CYD39_RS12610	COG2233	PERMEase
CYD39_RS12630	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CYD39_RS12645	COG2200	EAL domain
CYD39_RS12675	COG0653	protein targeting
CYD39_RS12680	COG0582	viral genome integration into host DNA
CYD39_RS12690	COG0517	IMP dehydrogenase activity
CYD39_RS12690	COG0516	GMP reductase activity
CYD39_RS12725	COG1645	bacterial-type flagellum-dependent swarming motility
CYD39_RS12740	COG2976	Protein conserved in bacteria
CYD39_RS12780	COG0437	4 iron, 4 sulfur cluster binding
CYD39_RS12785	COG0243	molybdopterin cofactor binding
CYD39_RS12790	COG4953	penicillin-binding protein 1C
CYD39_RS12795	COG2373	Large extracellular alpha-helical protein
CYD39_RS12800	COG2897	thiosulfate sulfurtransferase activity
CYD39_RS12820	COG2975	iron-sulfur cluster assembly
CYD39_RS12825	COG0633	Ferredoxin
CYD39_RS12845	COG0822	iron-sulfur transferase activity
CYD39_RS12890	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
CYD39_RS12900	COG3711	transcriptional antiterminator
CYD39_RS12905	COG2814	Major facilitator Superfamily
CYD39_RS12915	COG1017	nitric oxide dioxygenase activity
CYD39_RS12915	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CYD39_RS12920	COG3710	Transcriptional regulator
CYD39_RS12925	COG0531	amino acid
CYD39_RS12935	COG3104	oligopeptide transport
CYD39_RS12940	COG0347	Belongs to the P(II) protein family
CYD39_RS12945	COG2204	response regulator
CYD39_RS12950	COG3170	Tfp pilus assembly protein FimV
CYD39_RS12955	COG2205	protein histidine kinase activity
CYD39_RS12960	COG0047	phosphoribosylformylglycinamidine synthase activity
CYD39_RS12960	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CYD39_RS12980	COG0560	Phosphoserine phosphatase
CYD39_RS12985	COG1263	PTS System
CYD39_RS12985	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYD39_RS12995	COG1737	Transcriptional regulator
CYD39_RS13000	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CYD39_RS13005	COG2223	nitrite transmembrane transporter activity
CYD39_RS13010	COG0583	DNA-binding transcription factor activity
CYD39_RS13015	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CYD39_RS13025	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CYD39_RS13055	COG3086	response to oxidative stress
CYD39_RS13095	COG0513	Belongs to the DEAD box helicase family
CYD39_RS13100	COG0583	DNA-binding transcription factor activity
CYD39_RS13120	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CYD39_RS13125	COG3118	belongs to the thioredoxin family
CYD39_RS13130	COG3148	PFAM DTW domain containing protein
CYD39_RS13140	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CYD39_RS13145	COG5544	Lipoprotein
CYD39_RS13150	COG0477	Major facilitator Superfamily
CYD39_RS13180	COG0542	response to heat
CYD39_RS13195	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CYD39_RS13200	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CYD39_RS13210	COG1605	Chorismate mutase
CYD39_RS13210	COG0077	Prephenate dehydratase
CYD39_RS13220	COG1605	Chorismate mutase
CYD39_RS13220	COG0287	Prephenate dehydrogenase
CYD39_RS13235	COG2199	diguanylate cyclase activity
CYD39_RS13260	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CYD39_RS13265	COG4137	Cytochrome C assembly protein
CYD39_RS13270	COG4536	flavin adenine dinucleotide binding
CYD39_RS13290	COG0497	DNA recombination
CYD39_RS13305	COG2867	negative regulation of translational initiation
CYD39_RS13330	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CYD39_RS13380	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CYD39_RS13485	COG4695	Portal protein
CYD39_RS13560	COG4974	Belongs to the 'phage' integrase family
CYD39_RS13570	COG0582	viral genome integration into host DNA
CYD39_RS13610	COG2819	hydrolase of the alpha beta superfamily
CYD39_RS13635	COG2990	Protein conserved in bacteria
CYD39_RS13650	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
CYD39_RS13685	COG0579	oxidoreductase
CYD39_RS13690	COG1012	belongs to the aldehyde dehydrogenase family
CYD39_RS13695	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CYD39_RS13700	COG1113	amino acid transport
CYD39_RS13705	COG1802	Transcriptional regulator
CYD39_RS13710	COG1652	LysM domain
CYD39_RS13720	COG0401	homolog of Blt101
CYD39_RS13725	COG0640	Transcriptional regulator
CYD39_RS13730	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CYD39_RS13760	COG4575	ribosome binding
CYD39_RS13770	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CYD39_RS13815	COG2814	Major facilitator Superfamily
CYD39_RS13820	COG1846	Transcriptional regulator
CYD39_RS13825	COG1566	PFAM secretion protein HlyD family protein
CYD39_RS13830	COG2814	Major facilitator Superfamily
CYD39_RS13850	COG1238	metal cluster binding
CYD39_RS13855	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CYD39_RS13885	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CYD39_RS13910	COG1546	Belongs to the CinA family
CYD39_RS13920	COG2951	lytic endotransglycosylase activity
CYD39_RS13925	COG3730	PTS system glucitol sorbitol-specific
CYD39_RS13930	COG3732	PTS system glucitol sorbitol-specific
CYD39_RS13940	COG1028	Short-chain dehydrogenase reductase Sdr
CYD39_RS13945	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS13950	COG1349	DNA-binding transcription factor activity
CYD39_RS13955	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CYD39_RS13955	COG0517	IMP dehydrogenase activity
CYD39_RS13975	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CYD39_RS13980	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CYD39_RS13990	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CYD39_RS14000	COG3260	NADH ubiquinone oxidoreductase 20
CYD39_RS14005	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CYD39_RS14010	COG3261	NADH dehydrogenase
CYD39_RS14010	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
CYD39_RS14015	COG0650	Formate hydrogenlyase subunit 4
CYD39_RS14020	COG0651	ATP synthesis coupled electron transport
CYD39_RS14025	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CYD39_RS14040	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CYD39_RS14045	COG0298	carbon dioxide binding
CYD39_RS14050	COG0409	Hydrogenase expression formation protein
CYD39_RS14055	COG0309	Hydrogenase expression formation protein (HypE)
CYD39_RS14075	COG1121	(ABC) transporter
CYD39_RS14080	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CYD39_RS14085	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CYD39_RS14170	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CYD39_RS14260	COG2207	Transcriptional regulator
CYD39_RS14335	COG0477	Major facilitator Superfamily
CYD39_RS14345	COG2610	gluconate transmembrane transporter activity
CYD39_RS14350	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CYD39_RS14355	COG3622	Belongs to the hyi family
CYD39_RS14360	COG0235	Class ii aldolase
CYD39_RS14370	COG2084	Dehydrogenase
CYD39_RS14375	COG1349	DNA-binding transcription factor activity
CYD39_RS14385	COG0163	prenyltransferase activity
CYD39_RS14390	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CYD39_RS14460	COG2234	aminopeptidase activity
CYD39_RS14465	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CYD39_RS14470	COG1518	maintenance of DNA repeat elements
CYD39_RS14485	COG1857	crispr-associated protein
CYD39_RS14500	COG1203	CRISPR-associated helicase, Cas3
CYD39_RS14525	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CYD39_RS14530	COG0720	synthase
CYD39_RS14535	COG0321	lipoyl(octanoyl) transferase activity
CYD39_RS14535	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CYD39_RS14540	COG0602	queuosine metabolic process
CYD39_RS14555	COG3956	TIGRFAM MazG family protein
CYD39_RS14560	COG3539	Fimbrial protein
CYD39_RS14565	COG3188	usher protein
CYD39_RS14570	COG3121	Chaperone
CYD39_RS14575	COG3539	Fimbrial protein
CYD39_RS14610	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CYD39_RS14620	COG4999	Histidine kinase
CYD39_RS14620	COG3850	Histidine kinase
CYD39_RS14620	COG2205	protein histidine kinase activity
CYD39_RS14620	COG3437	response regulator, receiver
CYD39_RS14625	COG1929	Belongs to the glycerate kinase type-1 family
CYD39_RS14630	COG4948	Mandelate Racemase Muconate Lactonizing
CYD39_RS14635	COG4948	Mandelate Racemase Muconate Lactonizing
CYD39_RS14640	COG2271	Major facilitator Superfamily
CYD39_RS14645	COG0716	FMN binding
CYD39_RS14655	COG3098	single-species biofilm formation
CYD39_RS14675	COG1611	Belongs to the LOG family
CYD39_RS14680	COG0814	amino acid
CYD39_RS14685	COG1760	l-serine dehydratase
CYD39_RS14695	COG1454	alcohol dehydrogenase
CYD39_RS14700	COG0235	Class ii aldolase
CYD39_RS14705	COG0738	Major facilitator superfamily
CYD39_RS14725	COG1349	DNA-binding transcription factor activity
CYD39_RS14735	COG2363	Small membrane protein
CYD39_RS14740	COG0583	DNA-binding transcription factor activity
CYD39_RS14750	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CYD39_RS14755	COG2166	iron-sulfur cluster assembly
CYD39_RS14760	COG2962	Rard protein
CYD39_RS14765	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CYD39_RS14770	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
CYD39_RS14785	COG0860	N-Acetylmuramoyl-L-alanine amidase
CYD39_RS14795	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CYD39_RS14800	COG1074	ATP-dependent DNA helicase activity
CYD39_RS14810	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
CYD39_RS14815	COG4967	type IV pilus modification protein PilV
CYD39_RS14825	COG4795	General secretion pathway protein
CYD39_RS14830	COG2165	general secretion pathway protein
CYD39_RS14865	COG0861	Integral membrane protein TerC family
CYD39_RS14875	COG0667	Aldo Keto reductase
CYD39_RS14895	COG1609	Transcriptional regulator
CYD39_RS14905	COG0583	DNA-binding transcription factor activity
CYD39_RS14910	COG1794	racemase activity, acting on amino acids and derivatives
CYD39_RS14915	COG2814	Major facilitator Superfamily
CYD39_RS14920	COG1028	Short-chain dehydrogenase reductase Sdr
CYD39_RS14930	COG0183	Belongs to the thiolase family
CYD39_RS14945	COG0814	amino acid
CYD39_RS14980	COG3188	usher protein
CYD39_RS15020	COG4942	peptidase
CYD39_RS15075	COG1272	protein, Hemolysin III
CYD39_RS15085	COG2723	6-phospho-beta-galactosidase activity
CYD39_RS15115	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CYD39_RS15120	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CYD39_RS15125	COG0006	proline dipeptidase activity
CYD39_RS15145	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CYD39_RS15150	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CYD39_RS15170	COG2968	Membrane
CYD39_RS15180	COG0668	transmembrane transport
CYD39_RS15185	COG0191	fructose-bisphosphate aldolase activity
CYD39_RS15215	COG1122	ATPase activity
CYD39_RS15220	COG1122	ATPase activity
CYD39_RS15225	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CYD39_RS15230	COG0501	Belongs to the peptidase M48B family
CYD39_RS15240	COG2267	carboxylic ester hydrolase activity
CYD39_RS15245	COG2731	YhcH YjgK YiaL family protein
CYD39_RS15250	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
CYD39_RS15255	COG1063	alcohol dehydrogenase
CYD39_RS15260	COG0246	Mannitol dehydrogenase
CYD39_RS15270	COG2186	Transcriptional regulator
CYD39_RS15280	COG1166	arginine decarboxylase activity
CYD39_RS15300	COG2814	Major facilitator Superfamily
CYD39_RS15310	COG2356	endonuclease I
CYD39_RS15315	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CYD39_RS15340	COG2805	Type II/IV secretion system protein
CYD39_RS15345	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CYD39_RS15350	COG0762	integral membrane protein
CYD39_RS15365	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CYD39_RS15375	COG0252	asparaginase activity
CYD39_RS15385	COG3171	Protein conserved in bacteria
CYD39_RS15410	COG2211	Major facilitator Superfamily
CYD39_RS15415	COG1982	Orn Lys Arg decarboxylase major
CYD39_RS15420	COG1811	Na channel or pump
CYD39_RS15515	COG0531	amino acid
CYD39_RS15525	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CYD39_RS15530	COG1012	belongs to the aldehyde dehydrogenase family
CYD39_RS15555	COG2271	Major facilitator Superfamily
CYD39_RS15565	COG0246	Mannitol dehydrogenase
CYD39_RS15580	COG0754	glutathionylspermidine amidase activity
CYD39_RS15585	COG0625	glutathione transferase activity
CYD39_RS15595	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CYD39_RS15600	COG0298	carbon dioxide binding
CYD39_RS15610	COG1773	rubredoxin
CYD39_RS15615	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CYD39_RS15620	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CYD39_RS15625	COG5557	Pfam Polysulphide reductase, NrfD
CYD39_RS15630	COG0437	4 iron, 4 sulfur cluster binding
CYD39_RS15635	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CYD39_RS15645	COG0840	transmembrane signaling receptor activity
CYD39_RS15670	COG1028	Short-chain dehydrogenase reductase Sdr
CYD39_RS15675	COG0848	biopolymer transport protein
CYD39_RS15695	COG2207	Transcriptional regulator
CYD39_RS15700	COG1979	alcohol dehydrogenase
CYD39_RS15710	COG0471	metal ion transport
CYD39_RS15725	COG4238	major outer membrane lipoprotein
CYD39_RS15780	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
CYD39_RS15785	COG3111	PFAM Bacterial OB fold (BOF) protein
CYD39_RS15795	COG0642	Histidine kinase
CYD39_RS15800	COG2249	NAD(P)H dehydrogenase (quinone) activity
CYD39_RS15805	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CYD39_RS15815	COG3150	esterase
CYD39_RS15820	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CYD39_RS15825	COG3151	Protein conserved in bacteria
CYD39_RS15830	COG0494	nUDIX hydrolase
CYD39_RS15845	COG0754	glutathionylspermidine amidase activity
CYD39_RS15850	COG3384	dioxygenase
CYD39_RS15895	COG1585	Membrane protein implicated in regulation of membrane protease activity
CYD39_RS15900	COG2268	Band 7 protein
CYD39_RS15920	COG3025	triphosphatase activity
CYD39_RS15925	COG4991	sh3 domain protein
CYD39_RS15940	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CYD39_RS15965	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CYD39_RS15990	COG2375	cellular response to nickel ion
CYD39_RS15995	COG1695	Transcriptional regulator
CYD39_RS16000	COG0840	transmembrane signaling receptor activity
CYD39_RS16005	COG0840	transmembrane signaling receptor activity
CYD39_RS16015	COG1902	pentaerythritol trinitrate reductase activity
CYD39_RS16015	COG0446	pyridine nucleotide-disulphide oxidoreductase
CYD39_RS16025	COG1451	nucleotide metabolic process
CYD39_RS16030	COG2949	membrane
CYD39_RS16035	COG0673	inositol 2-dehydrogenase activity
CYD39_RS16050	COG0586	Pfam SNARE associated Golgi protein
CYD39_RS16060	COG1422	Protein of unknown function (DUF1090)
CYD39_RS16065	COG4575	ribosome binding
CYD39_RS16070	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
CYD39_RS16080	COG2259	Doxx family
CYD39_RS16085	COG0435	Glutathione S-transferase
CYD39_RS16090	COG3152	Membrane
CYD39_RS16095	COG0583	DNA-binding transcription factor activity
CYD39_RS16100	COG1741	Belongs to the pirin family
CYD39_RS16115	COG0814	amino acid
CYD39_RS16120	COG1760	l-serine dehydratase
CYD39_RS16125	COG1882	Formate acetyltransferase
CYD39_RS16145	COG0583	DNA-binding transcription factor activity
CYD39_RS16155	COG1929	Belongs to the glycerate kinase type-1 family
CYD39_RS16160	COG2084	Dehydrogenase
CYD39_RS16170	COG2721	sulfolactate sulfo-lyase activity
CYD39_RS16185	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS16190	COG3414	Phosphotransferase system galactitol-specific IIB component
CYD39_RS16195	COG3775	system Galactitol-specific IIC component
CYD39_RS16200	COG1063	alcohol dehydrogenase
CYD39_RS16210	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CYD39_RS16215	COG3107	peptidoglycan biosynthetic process
CYD39_RS16230	COG2823	Periplasmic or secreted lipoprotein
CYD39_RS16235	COG0702	epimerase
CYD39_RS16240	COG0693	protein deglycase activity
CYD39_RS16255	COG3153	acetyltransferase
CYD39_RS16260	COG3154	lipid carrier protein
CYD39_RS16265	COG0826	peptidase U32
CYD39_RS16270	COG0826	peptidase U32
CYD39_RS16275	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CYD39_RS16280	COG3034	peptidoglycan biosynthetic process
CYD39_RS16290	COG0814	amino acid
CYD39_RS16295	COG0513	Belongs to the DEAD box helicase family
CYD39_RS16365	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CYD39_RS16375	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CYD39_RS16390	COG1534	Rna-binding protein
CYD39_RS16400	COG2027	D-alanyl-D-alanine carboxypeptidase
CYD39_RS16410	COG0697	spore germination
CYD39_RS16425	COG0142	geranyltranstransferase activity
CYD39_RS16430	COG3423	Transcriptional regulator
CYD39_RS16440	COG5007	Belongs to the BolA IbaG family
CYD39_RS16445	COG3113	response to antibiotic
CYD39_RS16450	COG2854	intermembrane phospholipid transfer
CYD39_RS16455	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CYD39_RS16460	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CYD39_RS16465	COG1127	ABC transporter
CYD39_RS16470	COG0530	calcium, potassium:sodium antiporter activity
CYD39_RS16480	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CYD39_RS16485	COG3117	lipopolysaccharide transmembrane transporter activity
CYD39_RS16490	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CYD39_RS16495	COG1137	ATPase activity
CYD39_RS16520	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS16525	COG0515	serine threonine protein kinase
CYD39_RS16535	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
CYD39_RS16540	COG0784	Response regulator, receiver
CYD39_RS16540	COG2198	Histidine kinase
CYD39_RS16540	COG5002	protein histidine kinase activity
CYD39_RS16545	COG1242	4 iron, 4 sulfur cluster binding
CYD39_RS16550	COG0070	glutamate synthase
CYD39_RS16550	COG0069	glutamate synthase activity
CYD39_RS16550	COG0067	glutamate synthase
CYD39_RS16555	COG0493	'glutamate synthase
CYD39_RS16560	COG4804	nuclease activity
CYD39_RS16565	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CYD39_RS16570	COG0402	S-adenosylhomocysteine deaminase activity
CYD39_RS16575	COG2731	YhcH YjgK YiaL family protein
CYD39_RS16605	COG2969	positive regulation of protein catabolic process
CYD39_RS16610	COG0625	glutathione transferase activity
CYD39_RS16625	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CYD39_RS16630	COG3105	Protein conserved in bacteria
CYD39_RS16635	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CYD39_RS16650	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
CYD39_RS16655	COG5016	pyruvate
CYD39_RS16655	COG0511	ligase activity, forming carbon-carbon bonds
CYD39_RS16665	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CYD39_RS16670	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CYD39_RS16675	COG0471	metal ion transport
CYD39_RS16685	COG2188	Transcriptional regulator
CYD39_RS16710	COG2732	(Barnase) inhibitor
CYD39_RS16730	COG0583	DNA-binding transcription factor activity
CYD39_RS16735	COG0312	modulator of DNA gyrase
CYD39_RS16740	COG3164	Protein of unknown function
CYD39_RS16755	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CYD39_RS16760	COG1792	Involved in formation and maintenance of cell shape
CYD39_RS16765	COG1077	Cell shape determining protein MreB Mrl
CYD39_RS16770	COG2200	EAL domain
CYD39_RS16770	COG2199	diguanylate cyclase activity
CYD39_RS16775	COG0604	alcohol dehydrogenase
CYD39_RS16795	COG0511	ligase activity, forming carbon-carbon bonds
CYD39_RS16800	COG0439	Biotin carboxylase
CYD39_RS16805	COG3924	membrane
CYD39_RS16810	COG4145	pantothenate transmembrane transporter activity
CYD39_RS16835	COG2189	Belongs to the N(4) N(6)-methyltransferase family
CYD39_RS16850	COG1309	transcriptional regulator
CYD39_RS16855	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CYD39_RS16860	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CYD39_RS16900	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CYD39_RS16920	COG0551	DNA topoisomerase type I activity
CYD39_RS16930	COG0758	DNA mediated transformation
CYD39_RS16960	COG3036	rescue of stalled ribosome
CYD39_RS16965	COG0789	Transcriptional regulator
CYD39_RS17005	COG0201	protein transport
CYD39_RS17085	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CYD39_RS17110	COG0051	transcription antitermination factor activity, RNA binding
CYD39_RS17165	COG2964	Protein conserved in bacteria
CYD39_RS17170	COG0545	Peptidyl-prolyl cis-trans isomerase
CYD39_RS17180	COG1047	Peptidyl-prolyl cis-trans
CYD39_RS17185	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
CYD39_RS17200	COG0488	(ABC) transporter
CYD39_RS17215	COG0429	hydrolase of the alpha beta-hydrolase fold
CYD39_RS17225	COG3954	Phosphoribulokinase
CYD39_RS17230	COG1765	OsmC-like protein
CYD39_RS17240	COG1289	transmembrane transporter activity
CYD39_RS17275	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CYD39_RS17320	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CYD39_RS17325	COG0338	D12 class N6 adenine-specific DNA methyltransferase
CYD39_RS17330	COG3266	domain, Protein
CYD39_RS17345	COG4796	Type ii and iii secretion system protein
CYD39_RS17360	COG3166	PFAM Fimbrial assembly family protein
CYD39_RS17365	COG4972	Pilus assembly protein
CYD39_RS17370	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CYD39_RS17375	COG0494	nUDIX hydrolase
CYD39_RS17385	COG1011	Hydrolase
CYD39_RS17390	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CYD39_RS17405	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
CYD39_RS17425	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CYD39_RS17430	COG2183	response to ionizing radiation
CYD39_RS17435	COG1918	ferrous iron import across plasma membrane
CYD39_RS17450	COG5464	transposase or invertase
CYD39_RS17470	COG2610	gluconate transmembrane transporter activity
CYD39_RS17475	COG1640	4-alpha-glucanotransferase
CYD39_RS17480	COG0058	SHG alpha-glucan phosphorylase activity
CYD39_RS17500	COG1690	Belongs to the RtcB family
CYD39_RS17510	COG4650	regulator
CYD39_RS17515	COG1349	DNA-binding transcription factor activity
CYD39_RS17530	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CYD39_RS17545	COG0371	Dehydrogenase
CYD39_RS17555	COG0129	dihydroxy-acid dehydratase activity
CYD39_RS17560	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CYD39_RS17565	COG1414	Transcriptional regulator
CYD39_RS17570	COG0058	SHG alpha-glucan phosphorylase activity
CYD39_RS17605	COG2610	gluconate transmembrane transporter activity
CYD39_RS17610	COG3265	gluconokinase activity
CYD39_RS17615	COG1609	Transcriptional regulator
CYD39_RS17620	COG1741	Belongs to the pirin family
CYD39_RS17625	COG0673	inositol 2-dehydrogenase activity
CYD39_RS17630	COG1247	-acetyltransferase
CYD39_RS17635	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CYD39_RS17650	COG1735	metal-dependent hydrolase with the TIM-barrel fold
CYD39_RS17655	COG0405	Gamma-glutamyltransferase
CYD39_RS17665	COG0584	glycerophosphoryl diester phosphodiesterase
CYD39_RS17735	COG2177	Part of the ABC transporter FtsEX involved in
CYD39_RS17740	COG2884	Cell division ATP-binding protein ftsE
CYD39_RS17745	COG0552	protein localization to endoplasmic reticulum
CYD39_RS17750	COG0742	ribosomal rna small subunit methyltransferase
CYD39_RS17755	COG3776	membrane
CYD39_RS17765	COG3714	YhhN family
CYD39_RS17785	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CYD39_RS17800	COG0628	permease
CYD39_RS17805	COG2091	lysine biosynthetic process via aminoadipic acid
CYD39_RS17815	COG0842	Transport permease protein
CYD39_RS17820	COG1129	ABC transporter
CYD39_RS17820	COG0842	Transport permease protein
CYD39_RS17825	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CYD39_RS17830	COG2081	HI0933 family
CYD39_RS17835	COG0306	phosphate transporter
CYD39_RS17875	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CYD39_RS17880	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CYD39_RS17890	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CYD39_RS17895	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CYD39_RS17900	COG2222	sugar isomerase
CYD39_RS17905	COG2188	Transcriptional regulator
CYD39_RS17925	COG2197	response regulator
CYD39_RS17930	COG0583	DNA-binding transcription factor activity
CYD39_RS17935	COG1295	ribonuclease BN
CYD39_RS17940	COG0477	Major facilitator Superfamily
CYD39_RS17945	COG2982	Protein involved in outer membrane biogenesis
CYD39_RS17950	COG2200	EAL domain
CYD39_RS17955	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CYD39_RS17970	COG2200	EAL domain
CYD39_RS17970	COG2199	diguanylate cyclase activity
CYD39_RS17990	COG1215	transferase activity, transferring glycosyl groups
CYD39_RS18030	COG0814	amino acid
CYD39_RS18035	COG4608	Belongs to the ABC transporter superfamily
CYD39_RS18040	COG0444	Belongs to the ABC transporter superfamily
CYD39_RS18045	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CYD39_RS18050	COG0601	transmembrane transport
CYD39_RS18055	COG0747	negative chemotaxis
CYD39_RS18070	COG1609	Transcriptional regulator
CYD39_RS18120	COG5571	outer membrane autotransporter
CYD39_RS18125	COG2818	Glycosylase
CYD39_RS18130	COG0456	acetyltransferase
CYD39_RS18135	COG0243	molybdopterin cofactor binding
CYD39_RS18140	COG2885	chlorophyll binding
CYD39_RS18155	COG2944	sequence-specific DNA binding
CYD39_RS18160	COG1278	Cold shock
CYD39_RS18185	COG2801	Transposase and inactivated derivatives
CYD39_RS18190	COG2801	Transposase and inactivated derivatives
CYD39_RS18215	COG3274	enterobacterial common antigen metabolic process
CYD39_RS18220	COG4682	membrane
CYD39_RS18225	COG1070	Carbohydrate kinase
CYD39_RS18235	COG2207	Transcriptional regulator
CYD39_RS18235	COG1609	Transcriptional regulator
CYD39_RS18240	COG2992	FlgJ-related protein
CYD39_RS18245	COG0366	Alpha amylase catalytic
CYD39_RS18250	COG3977	Valine--pyruvate aminotransferase
CYD39_RS18255	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CYD39_RS18260	COG1414	Transcriptional regulator
CYD39_RS18270	COG2731	YhcH YjgK YiaL family protein
CYD39_RS18280	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CYD39_RS18285	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
CYD39_RS18290	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CYD39_RS18295	COG1070	Carbohydrate kinase
CYD39_RS18300	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
CYD39_RS18305	COG3623	hexulose-6-phosphate isomerase
CYD39_RS18310	COG0235	Class ii aldolase
CYD39_RS18325	COG1012	belongs to the aldehyde dehydrogenase family
CYD39_RS18330	COG1940	carbohydrate kinase activity
CYD39_RS18335	COG3276	selenocysteine insertion sequence binding
CYD39_RS18345	COG0625	glutathione transferase activity
CYD39_RS18350	COG1566	PFAM secretion protein HlyD family protein
CYD39_RS18365	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS18365	COG2213	PTS system mannitol-specific
CYD39_RS18375	COG3722	fumarate hydratase activity
CYD39_RS18405	COG2186	Transcriptional regulator
CYD39_RS18415	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CYD39_RS18420	COG1609	Transcriptional regulator
CYD39_RS18430	COG2271	Major facilitator Superfamily
CYD39_RS18450	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CYD39_RS18455	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CYD39_RS18465	COG4942	peptidase
CYD39_RS18470	COG2861	carbohydrate metabolic process
CYD39_RS18475	COG1216	Glycosyl transferase, family 2
CYD39_RS18550	COG0438	transferase activity, transferring glycosyl groups
CYD39_RS18555	COG0859	PFAM glycosyl transferase family 9
CYD39_RS18560	COG1519	Transferase
CYD39_RS18590	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CYD39_RS18615	COG1561	YicC-like family, N-terminal region
CYD39_RS18620	COG0583	DNA-binding transcription factor activity
CYD39_RS18630	COG2860	membrane
CYD39_RS18650	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CYD39_RS18655	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CYD39_RS18660	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CYD39_RS18670	COG0786	glutamate:sodium symporter activity
CYD39_RS18675	COG2233	PERMEase
CYD39_RS18680	COG2982	Protein involved in outer membrane biogenesis
CYD39_RS18685	COG1501	Belongs to the glycosyl hydrolase 31 family
CYD39_RS18690	COG2211	Major facilitator Superfamily
CYD39_RS18705	COG3539	Fimbrial protein
CYD39_RS18715	COG3539	Fimbrial protein
CYD39_RS18725	COG3188	usher protein
CYD39_RS18730	COG3121	Chaperone
CYD39_RS18745	COG2771	luxR family
CYD39_RS18760	COG3710	Transcriptional regulator
CYD39_RS18770	COG1335	isochorismatase
CYD39_RS18800	COG5464	transposase or invertase
CYD39_RS18815	COG3716	PTS system mannose fructose sorbose family IID component
CYD39_RS18820	COG3715	PTS system
CYD39_RS18825	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS18825	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYD39_RS18845	COG2723	6-phospho-beta-galactosidase activity
CYD39_RS18880	COG3775	system Galactitol-specific IIC component
CYD39_RS18885	COG3414	Phosphotransferase system galactitol-specific IIB component
CYD39_RS18890	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS18890	COG3711	transcriptional antiterminator
CYD39_RS18895	COG2188	Transcriptional regulator
CYD39_RS18930	COG0738	Major facilitator superfamily
CYD39_RS18940	COG1349	DNA-binding transcription factor activity
CYD39_RS18945	COG0440	acetolactate synthase activity
CYD39_RS18950	COG0028	Belongs to the TPP enzyme family
CYD39_RS18975	COG2814	Major facilitator Superfamily
CYD39_RS18985	COG0583	DNA-binding transcription factor activity
CYD39_RS18990	COG2610	gluconate transmembrane transporter activity
CYD39_RS19000	COG0641	radical SAM
CYD39_RS19010	COG2149	membrane
CYD39_RS19030	COG5645	(Lipo)protein
CYD39_RS19035	COG0823	Involved in the tonB-independent uptake of proteins
CYD39_RS19040	COG3088	subunit of a heme lyase
CYD39_RS19040	COG4235	cytochrome complex assembly
CYD39_RS19045	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CYD39_RS19050	COG1138	Cytochrome C-type biogenesis protein
CYD39_RS19060	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CYD39_RS19065	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CYD39_RS19070	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CYD39_RS19080	COG1858	cytochrome C peroxidase
CYD39_RS19095	COG3005	denitrification pathway
CYD39_RS19100	COG0745	RESPONSE REGULATOR receiver
CYD39_RS19105	COG1879	ABC-type sugar transport system periplasmic component
CYD39_RS19110	COG0784	Response regulator, receiver
CYD39_RS19110	COG2205	protein histidine kinase activity
CYD39_RS19110	COG2198	Histidine kinase
CYD39_RS19130	COG0561	phosphatase activity
CYD39_RS19195	COG2091	lysine biosynthetic process via aminoadipic acid
CYD39_RS19200	COG0431	NADPH-dependent FMN reductase
CYD39_RS19210	COG2252	PERMEase
CYD39_RS19220	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CYD39_RS19225	COG0704	Plays a role in the regulation of phosphate uptake
CYD39_RS19235	COG0581	inorganic phosphate transmembrane transporter activity
CYD39_RS19240	COG0573	inorganic phosphate transmembrane transporter activity
CYD39_RS19245	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CYD39_RS19250	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CYD39_RS19250	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CYD39_RS19250	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CYD39_RS19255	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CYD39_RS19260	COG4533	DNA binding
CYD39_RS19320	COG3312	ion transport
CYD39_RS19335	COG0716	FMN binding
CYD39_RS19340	COG1522	sequence-specific DNA binding
CYD39_RS19375	COG1172	Belongs to the binding-protein-dependent transport system permease family
CYD39_RS19385	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CYD39_RS19390	COG1609	Transcriptional regulator
CYD39_RS19395	COG0477	Major facilitator Superfamily
CYD39_RS19400	COG2186	Transcriptional regulator
CYD39_RS19460	COG3978	acetolactate synthase activity
CYD39_RS19535	COG3118	belongs to the thioredoxin family
CYD39_RS19565	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CYD39_RS19570	COG1088	dTDP-glucose 4,6-dehydratase activity
CYD39_RS19575	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CYD39_RS19575	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CYD39_RS19580	COG0456	acetyltransferase
CYD39_RS19585	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CYD39_RS19590	COG2244	polysaccharide biosynthetic process
CYD39_RS19635	COG3071	HemY protein
CYD39_RS19640	COG2959	enzyme of heme biosynthesis
CYD39_RS19710	COG1011	Hydrolase
CYD39_RS19760	COG1280	lysine exporter protein (LysE YggA)
CYD39_RS19765	COG2267	carboxylic ester hydrolase activity
CYD39_RS19770	COG0561	phosphatase activity
CYD39_RS19795	COG0641	radical SAM
CYD39_RS19840	COG0805	protein transport
CYD39_RS19885	COG1739	Uncharacterized protein family UPF0029
CYD39_RS19925	COG1763	Mo-molybdopterin cofactor biosynthetic process
CYD39_RS19930	COG0746	molybdenum cofactor guanylyltransferase activity
CYD39_RS19935	COG3084	Protein conserved in bacteria
CYD39_RS19950	COG0204	Acyl-transferase
CYD39_RS20005	COG0561	phosphatase activity
CYD39_RS20040	COG2211	Major facilitator Superfamily
CYD39_RS20050	COG1501	Belongs to the glycosyl hydrolase 31 family
CYD39_RS20060	COG2017	converts alpha-aldose to the beta-anomer
CYD39_RS20070	COG3684	Belongs to the aldolase LacD family
CYD39_RS20080	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CYD39_RS20085	COG1349	DNA-binding transcription factor activity
CYD39_RS20090	COG1011	Hydrolase
CYD39_RS20105	COG0456	acetyltransferase
CYD39_RS20110	COG5499	transcription regulator containing HTH domain
CYD39_RS20115	COG4680	protein conserved in bacteria
CYD39_RS20125	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
CYD39_RS20140	COG2864	formate dehydrogenase
CYD39_RS20145	COG0437	4 iron, 4 sulfur cluster binding
CYD39_RS20170	COG0326	Molecular chaperone. Has ATPase activity
CYD39_RS20190	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CYD39_RS20205	COG1454	alcohol dehydrogenase
CYD39_RS20250	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CYD39_RS20260	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CYD39_RS20265	COG2258	MOSC domain
CYD39_RS20275	COG2205	protein histidine kinase activity
CYD39_RS20280	COG0745	RESPONSE REGULATOR receiver
CYD39_RS20285	COG3678	ATP-independent chaperone mediated protein folding
CYD39_RS20310	COG2211	Major facilitator Superfamily
CYD39_RS20325	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CYD39_RS20345	COG1070	Carbohydrate kinase
CYD39_RS20370	COG1879	ABC-type sugar transport system periplasmic component
CYD39_RS20400	COG3152	Membrane
CYD39_RS20410	COG1494	fructose-1,6-bisphosphatase
CYD39_RS20420	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CYD39_RS20435	COG1575	Belongs to the MenA family. Type 1 subfamily
CYD39_RS20450	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CYD39_RS20455	COG1609	Transcriptional regulator
CYD39_RS20460	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CYD39_RS20485	COG0626	cystathionine gamma-synthase activity
CYD39_RS20490	COG0527	aspartate kinase activity
CYD39_RS20490	COG0460	homoserine dehydrogenase
CYD39_RS20495	COG0668	transmembrane transport
CYD39_RS20510	COG0737	Belongs to the 5'-nucleotidase family
CYD39_RS20525	COG3738	Protein conserved in bacteria
CYD39_RS20530	COG0371	Dehydrogenase
CYD39_RS20540	COG2207	Transcriptional regulator
CYD39_RS20575	COG0583	DNA-binding transcription factor activity
CYD39_RS20685	COG0250	Participates in transcription elongation, termination and antitermination
CYD39_RS20750	COG2104	thiamine diphosphate biosynthetic process
CYD39_RS20755	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CYD39_RS20815	COG2204	response regulator
CYD39_RS20820	COG0151	Belongs to the GarS family
CYD39_RS20860	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CYD39_RS20920	COG3122	Protein conserved in bacteria
CYD39_RS20960	COG5301	cellulose 1,4-beta-cellobiosidase activity
CYD39_RS20990	COG2246	polysaccharide biosynthetic process
CYD39_RS21070	COG0527	aspartate kinase activity
CYD39_RS21095	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CYD39_RS21150	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CYD39_RS21160	COG0534	Mate efflux family protein
CYD39_RS21175	COG0735	belongs to the Fur family
CYD39_RS21225	COG2315	Protein conserved in bacteria
CYD39_RS21290	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CYD39_RS21310	COG2252	PERMEase
CYD39_RS21315	COG0025	NhaP-type Na H and K H
CYD39_RS21320	COG0583	DNA-binding transcription factor activity
CYD39_RS21325	COG1380	Effector of murein hydrolase LrgA
CYD39_RS21330	COG1346	cytolysis
CYD39_RS21340	COG3162	membrane
CYD39_RS21345	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CYD39_RS21355	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
CYD39_RS21360	COG0437	4 iron, 4 sulfur cluster binding
CYD39_RS21365	COG3301	Polysulphide reductase, NrfD
CYD39_RS21370	COG1138	Cytochrome C-type biogenesis protein
CYD39_RS21375	COG4235	cytochrome complex assembly
CYD39_RS21380	COG1301	dicarboxylic acid transport
CYD39_RS21390	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CYD39_RS21410	COG2764	glyoxalase bleomycin resistance protein dioxygenase
CYD39_RS21415	COG2824	Alkylphosphonate utilization operon protein PhnA
CYD39_RS21445	COG0531	amino acid
CYD39_RS21450	COG2207	Transcriptional regulator
CYD39_RS21455	COG1982	Orn Lys Arg decarboxylase major
CYD39_RS21460	COG2169	Transcriptional regulator
CYD39_RS21475	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CYD39_RS21475	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CYD39_RS21480	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CYD39_RS21490	COG4565	transcriptional regulatory protein
CYD39_RS21495	COG3290	protein histidine kinase activity
CYD39_RS21500	COG0243	molybdopterin cofactor binding
CYD39_RS21505	COG0437	4 iron, 4 sulfur cluster binding
CYD39_RS21510	COG3302	dmso reductase anchor subunit
CYD39_RS21515	COG3381	protein complex oligomerization
CYD39_RS21540	COG2197	response regulator
CYD39_RS21585	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYD39_RS21585	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS21590	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYD39_RS21600	COG3716	PTS system mannose fructose sorbose family IID component
CYD39_RS21605	COG1063	alcohol dehydrogenase
CYD39_RS21610	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CYD39_RS21615	COG1063	alcohol dehydrogenase
CYD39_RS21620	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CYD39_RS21625	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CYD39_RS21625	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CYD39_RS21645	COG1309	transcriptional regulator
CYD39_RS21660	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CYD39_RS21665	COG1027	Aspartate ammonia-lyase
CYD39_RS21670	COG3030	protein affecting phage T7 exclusion by the F plasmid
CYD39_RS21675	COG0531	amino acid
CYD39_RS21715	COG5510	response to toxic substance
CYD39_RS21745	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CYD39_RS21750	COG1053	succinate dehydrogenase
CYD39_RS21770	COG1511	domain protein
CYD39_RS21770	COG3264	Mechanosensitive ion channel
CYD39_RS21790	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CYD39_RS21815	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CYD39_RS21815	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CYD39_RS21820	COG0802	atpase or kinase
CYD39_RS21845	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CYD39_RS21850	COG0330	HflC and HflK could
CYD39_RS21855	COG0330	HflC and HflK could
CYD39_RS21860	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
CYD39_RS21875	COG0557	exoribonuclease II activity
CYD39_RS21885	COG3789	protein conserved in bacteria
CYD39_RS21890	COG1842	Phage shock protein A
CYD39_RS21900	COG3766	membrane
CYD39_RS21905	COG5463	Belongs to the UPF0441 family
CYD39_RS21910	COG0754	glutathionylspermidine amidase activity
CYD39_RS21915	COG1960	acyl-CoA dehydrogenase activity
CYD39_RS21925	COG3650	response to hydrogen peroxide
CYD39_RS21930	COG1073	alpha beta
CYD39_RS21975	COG3477	response to acidic pH
CYD39_RS21995	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CYD39_RS22010	COG3061	Opacity-associated protein A
CYD39_RS22015	COG0545	Peptidyl-prolyl cis-trans isomerase
CYD39_RS22020	COG1113	amino acid transport
CYD39_RS22030	COG0697	spore germination
CYD39_RS22035	COG0702	epimerase
CYD39_RS22040	COG1733	regulation of RNA biosynthetic process
CYD39_RS22055	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
CYD39_RS22065	COG1253	flavin adenine dinucleotide binding
CYD39_RS22085	COG2105	PFAM AIG2 family protein
CYD39_RS22090	COG2271	Major facilitator Superfamily
CYD39_RS22095	COG3964	amidohydrolase
CYD39_RS22110	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CYD39_RS22115	COG1737	Transcriptional regulator
CYD39_RS22115	COG0837	glucose binding
CYD39_RS22120	COG0477	Major facilitator Superfamily
CYD39_RS22120	COG2814	Major facilitator Superfamily
CYD39_RS22130	COG0477	Major facilitator Superfamily
CYD39_RS22130	COG2814	Major facilitator Superfamily
CYD39_RS22135	COG3718	enzyme involved in inositol metabolism
CYD39_RS22165	COG5520	Belongs to the glycosyl hydrolase 30 family
CYD39_RS22170	COG1082	Xylose isomerase domain protein TIM barrel
CYD39_RS22180	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CYD39_RS22185	COG3962	Belongs to the TPP enzyme family
CYD39_RS22190	COG0673	inositol 2-dehydrogenase activity
CYD39_RS22195	COG2814	Major facilitator Superfamily
CYD39_RS22205	COG1082	Xylose isomerase domain protein TIM barrel
CYD39_RS22215	COG0312	modulator of DNA gyrase
CYD39_RS22250	COG3964	amidohydrolase
CYD39_RS22265	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYD39_RS22265	COG3711	transcriptional antiterminator
CYD39_RS22290	COG0366	Alpha amylase catalytic
CYD39_RS22295	COG1263	PTS System
CYD39_RS22295	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYD39_RS22345	COG1438	arginine binding
CYD39_RS22350	COG1288	antiporter activity
CYD39_RS22370	COG2731	YhcH YjgK YiaL family protein
CYD39_RS22410	COG2927	DNA polymerase III (CHI subunit)
CYD39_RS22420	COG0795	lipopolysaccharide-transporting ATPase activity
CYD39_RS22425	COG0795	lipopolysaccharide-transporting ATPase activity
CYD39_RS22430	COG1609	Transcriptional regulator
CYD39_RS22435	COG2610	gluconate transmembrane transporter activity
CYD39_RS22440	COG1028	Short-chain dehydrogenase reductase Sdr
CYD39_RS22445	COG1063	alcohol dehydrogenase
CYD39_RS22450	COG3265	gluconokinase activity
CYD39_RS22455	COG1064	alcohol dehydrogenase
CYD39_RS22465	COG0582	viral genome integration into host DNA
CYD39_RS22570	COG0494	nUDIX hydrolase
CYD39_RS22625	COG3550	peptidyl-serine autophosphorylation
CYD39_RS22645	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CYD39_RS22650	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CYD39_RS22665	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CYD39_RS22690	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
CYD39_RS22715	COG0412	Dienelactone hydrolase
CYD39_RS22720	COG2186	Transcriptional regulator
CYD39_RS22740	COG0583	DNA-binding transcription factor activity
CYD39_RS22745	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CYD39_RS22750	COG0700	Nucleoside recognition
CYD39_RS22755	COG3366	ferrous iron transmembrane transporter activity
CYD39_RS22760	COG0477	Major facilitator Superfamily
CYD39_RS22765	COG2733	membrane
CYD39_RS22775	COG5464	transposase or invertase
CYD39_RS22780	COG1012	belongs to the aldehyde dehydrogenase family
CYD39_RS22795	COG3586	endonuclease activity
CYD39_RS22800	COG1280	lysine exporter protein (LysE YggA)
CYD39_RS22810	COG0523	cobalamin synthesis protein
CYD39_RS22815	COG2879	small protein
CYD39_RS22820	COG1966	Carbon starvation protein
CYD39_RS22825	COG0840	transmembrane signaling receptor activity
CYD39_RS22840	COG1484	DNA-dependent DNA replication
CYD39_RS22855	COG2966	Psort location CytoplasmicMembrane, score
CYD39_RS22860	COG2197	response regulator
CYD39_RS22865	COG2197	response regulator
CYD39_RS22870	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CYD39_RS22875	COG4114	ferric iron reductase
CYD39_RS22880	COG3706	GGDEF domain
CYD39_RS22910	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
CYD39_RS22920	COG1011	Hydrolase
CYD39_RS22930	COG2823	Periplasmic or secreted lipoprotein
CYD39_RS22940	COG4667	esterase of the alpha-beta hydrolase superfamily
CYD39_RS22945	COG0084	hydrolase, TatD family'
CYD39_RS22950	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CYD39_RS22955	COG1328	CTP reductase activity
CYD39_RS22985	COG3188	usher protein
CYD39_RS22990	COG3121	Chaperone
CYD39_RS22995	COG3539	Fimbrial protein
CYD39_RS23010	COG3726	membrane protein affecting hemolysin expression
CYD39_RS23015	COG0560	Phosphoserine phosphatase
CYD39_RS23030	COG0488	(ABC) transporter
CYD39_RS23055	COG3708	Transcriptional regulator
CYD39_RS23055	COG2207	Transcriptional regulator
CYD39_RS23060	COG3045	CreA protein
CYD39_RS23065	COG0745	RESPONSE REGULATOR receiver
CYD39_RS23070	COG2205	protein histidine kinase activity
CYD39_RS23075	COG4452	Inner membrane protein CreD
CYD39_RS23095	COG3121	Chaperone
CYD39_RS23115	COG0745	RESPONSE REGULATOR receiver
CYD39_RS23125	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA