LFZ88_RS00040 SM00852 Probable molybdopterin binding domain LFZ88_RS00065 SM00271 DnaJ molecular chaperone homology domain LFZ88_RS00090 SM00495 Chitin-binding domain type 3 LFZ88_RS00090 SM00636 LFZ88_RS00090 LFZ88_RS00150 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS00230 SM00904 Riboflavin kinase LFZ88_RS00265 SM00448 cheY-homologous receiver domain LFZ88_RS00270 SM00091 PAS domain LFZ88_RS00270 SM00387 Histidine kinase-like ATPases LFZ88_RS00295 SM00764 Citrate lyase ligase C-terminal domain LFZ88_RS00330 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain LFZ88_RS00335 SM00851 MGS-like domain LFZ88_RS00335 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LFZ88_RS00380 SM00893 Electron transfer flavoprotein domain LFZ88_RS00385 SM00893 Electron transfer flavoprotein domain LFZ88_RS00465 SM00650 Ribosomal RNA adenine dimethylases LFZ88_RS00485 SM00271 DnaJ molecular chaperone homology domain LFZ88_RS00495 SM00487 DEAD-like helicases superfamily LFZ88_RS00495 SM00490 helicase superfamily c-terminal domain LFZ88_RS00500 SM00486 DNA polymerase type-B family LFZ88_RS00520 SM01007 Class II Aldolase and Adducin N-terminal domain LFZ88_RS00535 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS00545 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS00585 SM01329 LFZ88_RS00585 LFZ88_RS00590 SM00917 LeuA allosteric (dimerisation) domain LFZ88_RS00615 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS00685 SM00842 Cell division protein FtsA LFZ88_RS00690 SM00864 Tubulin/FtsZ family, GTPase domain LFZ88_RS00690 SM00865 Tubulin/FtsZ family, C-terminal domain LFZ88_RS00705 SM00957 SecA DEAD-like domain LFZ88_RS00705 SM00958 SecA preprotein cross-linking domain LFZ88_RS00740 SM01240 LFZ88_RS00740 LFZ88_RS00770 SM00644 LFZ88_RS00770 LFZ88_RS00795 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS00795 SM00895 LFZ88_RS00795 LFZ88_RS00840 SM00226 Low molecular weight phosphatase family LFZ88_RS00870 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS00870 SM01134 LFZ88_RS00870 LFZ88_RS00895 SM00564 beta-propeller repeat LFZ88_RS00905 SM00947 Carbonic anhydrase LFZ88_RS00910 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS01000 SM00487 DEAD-like helicases superfamily LFZ88_RS01000 SM00490 helicase superfamily c-terminal domain LFZ88_RS01000 SM00847 Helicase associated domain (HA2) Add an annotation LFZ88_RS01015 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS01105 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LFZ88_RS01110 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LFZ88_RS01135 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LFZ88_RS01190 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LFZ88_RS01200 SM00935 Outer membrane protein (OmpH-like) LFZ88_RS01230 SM00481 DNA polymerase alpha chain like domain LFZ88_RS01240 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins LFZ88_RS01255 SM00977 TilS substrate C-terminal domain LFZ88_RS01270 SM01322 LFZ88_RS01270 LFZ88_RS01310 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS01310 SM00930 LFZ88_RS01310 LFZ88_RS01375 SM00257 Lysin motif LFZ88_RS01380 SM00849 Metallo-beta-lactamase superfamily LFZ88_RS01395 SM00479 LFZ88_RS01395 LFZ88_RS01435 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS01435 SM01086 C-terminal, D2-small domain, of ClpB protein LFZ88_RS01725 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LFZ88_RS01830 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS01885 SM00422 helix_turn_helix, mercury resistance LFZ88_RS01925 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS01945 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS01970 SM01004 Delta-aminolevulinic acid dehydratase LFZ88_RS01975 SM00869 Autotransporter beta-domain LFZ88_RS02040 SM00267 diguanylate cyclase LFZ88_RS02100 SM00448 cheY-homologous receiver domain LFZ88_RS02100 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS02105 SM00091 PAS domain LFZ88_RS02105 SM00387 Histidine kinase-like ATPases LFZ88_RS02105 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS02120 SM00642 Alpha-amylase domain LFZ88_RS02150 SM01323 LFZ88_RS02150 LFZ88_RS02175 SM00507 HNH nucleases LFZ88_RS02235 SM00861 Transketolase, pyrimidine binding domain LFZ88_RS02250 SM00981 LFZ88_RS02250 LFZ88_RS02265 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS02275 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS02275 SM00866 LFZ88_RS02275 LFZ88_RS02310 SM00671 Sel1-like repeats. LFZ88_RS02380 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS02380 SM00994 ClpX C4-type zinc finger LFZ88_RS02380 SM01086 C-terminal, D2-small domain, of ClpB protein LFZ88_RS02385 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS02385 SM00464 Found in ATP-dependent protease La (LON) LFZ88_RS02390 SM00411 bacterial (prokaryotic) histone like domain LFZ88_RS02430 SM00344 helix_turn_helix ASNC type LFZ88_RS02435 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS02440 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS02445 SM00938 Nitrogen regulatory protein P-II LFZ88_RS02475 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS02495 SM01266 LFZ88_RS02495 LFZ88_RS02560 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS02570 SM00493 LFZ88_RS02570 LFZ88_RS02575 SM00387 Histidine kinase-like ATPases LFZ88_RS02640 SM00422 helix_turn_helix, mercury resistance LFZ88_RS02650 SM00244 prohibitin homologues LFZ88_RS02655 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS02670 SM00822 LFZ88_RS02670 LFZ88_RS02680 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS02700 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS02700 SM00930 LFZ88_RS02700 LFZ88_RS02710 SM00450 Rhodanese Homology Domain LFZ88_RS02725 SM00346 helix_turn_helix isocitrate lyase regulation LFZ88_RS02810 SM01001 AIR carboxylase LFZ88_RS02830 SM00840 LFZ88_RS02830 LFZ88_RS02895 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS02895 SM00448 cheY-homologous receiver domain LFZ88_RS02910 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS02950 SM00387 Histidine kinase-like ATPases LFZ88_RS02960 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS03000 SM00869 Autotransporter beta-domain LFZ88_RS03020 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS03050 SM00923 MbtH-like protein LFZ88_RS03055 SM00824 Thioesterase LFZ88_RS03065 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS03105 SM00822 LFZ88_RS03105 LFZ88_RS03135 SM00470 ParB-like nuclease domain LFZ88_RS03175 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS03250 SM00764 Citrate lyase ligase C-terminal domain LFZ88_RS03260 SM00091 PAS domain LFZ88_RS03260 SM00387 Histidine kinase-like ATPases LFZ88_RS03265 SM00448 cheY-homologous receiver domain LFZ88_RS03280 SM00357 Cold shock protein domain LFZ88_RS03300 SM00729 Elongator protein 3, MiaB family, Radical SAM LFZ88_RS03320 SM00936 Penicillin-binding protein 5, C-terminal domain LFZ88_RS03350 SM00855 Phosphoglycerate mutase family LFZ88_RS03380 SM00858 LFZ88_RS03380 LFZ88_RS03395 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS03405 SM00671 Sel1-like repeats. LFZ88_RS03415 SM00271 DnaJ molecular chaperone homology domain LFZ88_RS03460 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS03475 SM00062 Bacterial periplasmic substrate-binding proteins LFZ88_RS03485 SM00116 Domain in cystathionine beta-synthase and other proteins. LFZ88_RS03485 SM01091 Transporter associated domain LFZ88_RS03500 SM00729 Elongator protein 3, MiaB family, Radical SAM LFZ88_RS03665 SM00448 cheY-homologous receiver domain LFZ88_RS03665 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS03670 SM00387 Histidine kinase-like ATPases LFZ88_RS03670 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS03720 SM00796 Allophanate hydrolase subunit 1 LFZ88_RS03725 SM00797 Allophanate hydrolase subunit 2 LFZ88_RS03770 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS03790 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain LFZ88_RS03790 SM01232 LFZ88_RS03790 LFZ88_RS03835 SM00861 Transketolase, pyrimidine binding domain LFZ88_RS03850 SM00881 CoA binding domain LFZ88_RS04025 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04030 SM00855 Phosphoglycerate mutase family LFZ88_RS04065 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04090 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04120 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS04120 SM00866 LFZ88_RS04120 LFZ88_RS04145 SM00729 Elongator protein 3, MiaB family, Radical SAM LFZ88_RS04145 SM00876 Biotin and Thiamin Synthesis associated domain LFZ88_RS04170 SM00487 DEAD-like helicases superfamily LFZ88_RS04170 SM00490 helicase superfamily c-terminal domain LFZ88_RS04175 SM00364 Leucine-rich repeats, bacterial type LFZ88_RS04175 SM00369 Leucine-rich repeats, typical (most populated) subfamily LFZ88_RS04185 SM00729 Elongator protein 3, MiaB family, Radical SAM LFZ88_RS04190 SM00852 Probable molybdopterin binding domain LFZ88_RS04240 SM00155 Phospholipase D. Active site motifs. LFZ88_RS04265 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04290 SM00822 LFZ88_RS04290 LFZ88_RS04300 SM00861 Transketolase, pyrimidine binding domain LFZ88_RS04310 SM00487 DEAD-like helicases superfamily LFZ88_RS04310 SM00490 helicase superfamily c-terminal domain LFZ88_RS04315 SM00487 DEAD-like helicases superfamily LFZ88_RS04315 SM00488 LFZ88_RS04315 LFZ88_RS04315 SM00491 LFZ88_RS04315 LFZ88_RS04345 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04355 SM00062 Bacterial periplasmic substrate-binding proteins LFZ88_RS04355 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LFZ88_RS04385 SM00529 Helix-turn-helix diphteria tox regulatory element LFZ88_RS04400 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04445 SM00852 Probable molybdopterin binding domain LFZ88_RS04455 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04475 SM00729 Elongator protein 3, MiaB family, Radical SAM LFZ88_RS04495 SM00893 Electron transfer flavoprotein domain LFZ88_RS04500 SM00893 Electron transfer flavoprotein domain LFZ88_RS04550 SM00936 Penicillin-binding protein 5, C-terminal domain LFZ88_RS04555 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS04555 SM01134 LFZ88_RS04555 LFZ88_RS04560 SM00014 Acid phosphatase homologues LFZ88_RS04625 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04670 SM00062 Bacterial periplasmic substrate-binding proteins LFZ88_RS04670 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LFZ88_RS04685 SM00062 Bacterial periplasmic substrate-binding proteins LFZ88_RS04685 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LFZ88_RS04690 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04705 SM00644 LFZ88_RS04705 LFZ88_RS04765 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04775 SM00357 Cold shock protein domain LFZ88_RS04785 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04785 SM01086 C-terminal, D2-small domain, of ClpB protein LFZ88_RS04825 SM00316 Ribosomal protein S1-like RNA-binding domain LFZ88_RS04840 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04845 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04860 SM00344 helix_turn_helix ASNC type LFZ88_RS04865 SM00843 LFZ88_RS04865 LFZ88_RS04875 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS04890 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS04965 SM00316 Ribosomal protein S1-like RNA-binding domain LFZ88_RS04970 SM00411 bacterial (prokaryotic) histone like domain LFZ88_RS04975 SM00849 Metallo-beta-lactamase superfamily LFZ88_RS04980 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS05050 SM00849 Metallo-beta-lactamase superfamily LFZ88_RS05070 SM00344 helix_turn_helix ASNC type LFZ88_RS05125 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS05145 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS05415 SM00981 LFZ88_RS05415 LFZ88_RS05420 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS05490 SM00851 MGS-like domain LFZ88_RS05500 SM00881 CoA binding domain LFZ88_RS05505 SM00992 Hemimethylated DNA-binding protein YccV like LFZ88_RS05510 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LFZ88_RS05520 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS05585 SM00387 Histidine kinase-like ATPases LFZ88_RS05585 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS05590 SM00448 cheY-homologous receiver domain LFZ88_RS05590 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS05595 SM00095 Transthyretin LFZ88_RS05605 SM00903 Flavin reductase like domain LFZ88_RS05615 SM00347 helix_turn_helix multiple antibiotic resistance protein LFZ88_RS05655 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS05660 SM00849 Metallo-beta-lactamase superfamily LFZ88_RS05680 SM00271 DnaJ molecular chaperone homology domain LFZ88_RS05830 SM00481 DNA polymerase alpha chain like domain LFZ88_RS05860 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS05890 SM00506 Appr-1"-p processing enzyme LFZ88_RS05895 SM00155 Phospholipase D. Active site motifs. LFZ88_RS05945 SM00450 Rhodanese Homology Domain LFZ88_RS05950 SM00867 YceI-like domain LFZ88_RS06035 SM00858 LFZ88_RS06035 LFZ88_RS06080 SM00047 Lysozyme subfamily 2 LFZ88_RS06100 SM00316 Ribosomal protein S1-like RNA-binding domain LFZ88_RS06110 SM00363 S4 RNA-binding domain LFZ88_RS06150 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LFZ88_RS06155 SM00822 LFZ88_RS06155 LFZ88_RS06165 SM00825 Beta-ketoacyl synthase LFZ88_RS06255 SM00257 Lysin motif LFZ88_RS06260 SM00487 DEAD-like helicases superfamily LFZ88_RS06260 SM00490 helicase superfamily c-terminal domain LFZ88_RS06260 SM00982 LFZ88_RS06260 LFZ88_RS06260 SM01058 CarD-like/TRCF domain LFZ88_RS06270 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS06310 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS06330 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. LFZ88_RS06335 SM00387 Histidine kinase-like ATPases LFZ88_RS06340 SM00448 cheY-homologous receiver domain LFZ88_RS06340 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS06375 SM01329 LFZ88_RS06375 LFZ88_RS06480 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS06650 SM00409 Immunoglobulin LFZ88_RS06660 SM00974 LFZ88_RS06660 LFZ88_RS06705 SM00060 Fibronectin type 3 domain LFZ88_RS06770 SM00458 Ricin-type beta-trefoil LFZ88_RS06775 SM00357 Cold shock protein domain LFZ88_RS06850 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS06855 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS06885 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS06890 SM00422 helix_turn_helix, mercury resistance LFZ88_RS06905 SM00830 Chorismate mutase type II LFZ88_RS06965 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS06985 SM00267 diguanylate cyclase LFZ88_RS07000 SM00763 PrkA AAA domain LFZ88_RS07030 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LFZ88_RS07050 SM00870 LFZ88_RS07050 LFZ88_RS07070 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain LFZ88_RS07070 SM00437 Bacterial DNA topoisomerase I DNA-binding domain LFZ88_RS07070 SM00493 LFZ88_RS07070 LFZ88_RS07075 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LFZ88_RS07135 SM00465 GIY-YIG type nucleases (URI domain) LFZ88_RS07170 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS07185 SM01060 LFZ88_RS07185 LFZ88_RS07250 SM00477 DNA/RNA non-specific endonuclease LFZ88_RS07250 SM00892 DNA/RNA non-specific endonuclease LFZ88_RS07255 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LFZ88_RS07285 SM00873 B3/4 domain LFZ88_RS07285 SM00874 tRNA synthetase B5 domain LFZ88_RS07285 SM00896 Ferredoxin-fold anticodon binding domain LFZ88_RS07290 SM00411 bacterial (prokaryotic) histone like domain LFZ88_RS07305 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS07360 SM00893 Electron transfer flavoprotein domain LFZ88_RS07365 SM00893 Electron transfer flavoprotein domain LFZ88_RS07370 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS07380 SM00882 Coenzyme A transferase LFZ88_RS07450 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS07470 SM00257 Lysin motif LFZ88_RS07510 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS07515 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS07530 SM00387 Histidine kinase-like ATPases LFZ88_RS07530 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS07535 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS07535 SM00448 cheY-homologous receiver domain LFZ88_RS07550 SM00422 helix_turn_helix, mercury resistance LFZ88_RS07555 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS07555 SM00448 cheY-homologous receiver domain LFZ88_RS07560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS07560 SM00387 Histidine kinase-like ATPases LFZ88_RS07560 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS07560 SM00448 cheY-homologous receiver domain LFZ88_RS07615 SM00028 Tetratricopeptide repeats LFZ88_RS07675 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS07750 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS07780 SM00479 LFZ88_RS07780 LFZ88_RS07830 SM00347 helix_turn_helix multiple antibiotic resistance protein LFZ88_RS07855 SM00363 S4 RNA-binding domain LFZ88_RS07875 SM00478 endonuclease III LFZ88_RS07875 SM00525 LFZ88_RS07875 LFZ88_RS07885 SM00900 LFZ88_RS07885 LFZ88_RS07965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS07965 SM00387 Histidine kinase-like ATPases LFZ88_RS07965 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS07985 SM00448 cheY-homologous receiver domain LFZ88_RS07985 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS08010 SM01002 Alanine dehydrogenase/PNT, C-terminal domain LFZ88_RS08010 SM01003 Alanine dehydrogenase/PNT, N-terminal domain LFZ88_RS08080 SM00116 Domain in cystathionine beta-synthase and other proteins. LFZ88_RS08080 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS08115 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS08120 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS08150 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LFZ88_RS08175 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS08175 SM00895 LFZ88_RS08175 LFZ88_RS08220 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS08225 SM00347 helix_turn_helix multiple antibiotic resistance protein LFZ88_RS08325 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS08325 SM00895 LFZ88_RS08325 LFZ88_RS08355 SM00347 helix_turn_helix multiple antibiotic resistance protein LFZ88_RS08400 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS08415 SM00642 Alpha-amylase domain LFZ88_RS08420 SM00642 Alpha-amylase domain LFZ88_RS08425 SM00642 Alpha-amylase domain LFZ88_RS08455 SM00919 Malic enzyme, NAD binding domain LFZ88_RS08455 SM01274 LFZ88_RS08455 LFZ88_RS08460 SM00829 Enoylreductase LFZ88_RS08515 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS08575 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS08575 SM00895 LFZ88_RS08575 LFZ88_RS08580 SM00829 Enoylreductase LFZ88_RS08630 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS08665 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS08730 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS08730 SM01134 LFZ88_RS08730 LFZ88_RS08745 SM00867 YceI-like domain LFZ88_RS08760 SM01150 LFZ88_RS08760 LFZ88_RS08770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LFZ88_RS08770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS08770 SM00319 Homologues of the ligand binding domain of Tar LFZ88_RS08780 SM00829 Enoylreductase LFZ88_RS08805 SM00062 Bacterial periplasmic substrate-binding proteins LFZ88_RS08815 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS08845 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS08845 SM00487 DEAD-like helicases superfamily LFZ88_RS08845 SM00490 helicase superfamily c-terminal domain LFZ88_RS08845 SM00847 Helicase associated domain (HA2) Add an annotation LFZ88_RS08890 SM00890 Domain of unknown function LFZ88_RS08935 SM00487 DEAD-like helicases superfamily LFZ88_RS08935 SM00490 helicase superfamily c-terminal domain LFZ88_RS08950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LFZ88_RS08960 SM00463 Small MutS-related domain LFZ88_RS08970 SM00100 Cyclic nucleotide-monophosphate binding domain LFZ88_RS08970 SM00419 helix_turn_helix, cAMP Regulatory protein LFZ88_RS08990 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS08995 SM00873 B3/4 domain LFZ88_RS09025 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS09025 SM00871 Bacterial transcription activator, effector binding domain LFZ88_RS09045 SM00822 LFZ88_RS09045 LFZ88_RS09075 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LFZ88_RS09085 SM00091 PAS domain LFZ88_RS09085 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS09100 SM00450 Rhodanese Homology Domain LFZ88_RS09125 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS09145 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS09150 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS09185 SM00357 Cold shock protein domain LFZ88_RS09185 SM00955 LFZ88_RS09185 LFZ88_RS09195 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS09195 SM00091 PAS domain LFZ88_RS09195 SM00267 diguanylate cyclase LFZ88_RS09205 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS09205 SM01134 LFZ88_RS09205 LFZ88_RS09220 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family LFZ88_RS09225 SM00028 Tetratricopeptide repeats LFZ88_RS09240 SM00014 Acid phosphatase homologues LFZ88_RS09270 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain LFZ88_RS09270 SM00437 Bacterial DNA topoisomerase I DNA-binding domain LFZ88_RS09270 SM00493 LFZ88_RS09270 LFZ88_RS09285 SM00822 LFZ88_RS09285 LFZ88_RS09295 SM00363 S4 RNA-binding domain LFZ88_RS09305 SM00481 DNA polymerase alpha chain like domain LFZ88_RS09395 SM00155 Phospholipase D. Active site motifs. LFZ88_RS09410 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS09415 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS09455 SM00528 Domain in histone-like proteins of HNS family LFZ88_RS09465 SM00448 cheY-homologous receiver domain LFZ88_RS09510 SM00671 Sel1-like repeats. LFZ88_RS09535 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS09550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS09550 SM00387 Histidine kinase-like ATPases LFZ88_RS09555 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS09555 SM00448 cheY-homologous receiver domain LFZ88_RS09600 SM00937 LFZ88_RS09600 LFZ88_RS09620 SM01400 LFZ88_RS09620 LFZ88_RS09705 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LFZ88_RS09735 SM01091 Transporter associated domain LFZ88_RS09740 SM01005 Alanine racemase, C-terminal domain LFZ88_RS09755 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS09810 SM00341 Helicase and RNase D C-terminal LFZ88_RS09810 SM00474 3'-5' exonuclease LFZ88_RS09835 SM00487 DEAD-like helicases superfamily LFZ88_RS09835 SM00491 LFZ88_RS09835 LFZ88_RS09865 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS09870 SM01091 Transporter associated domain LFZ88_RS09920 SM00357 Cold shock protein domain LFZ88_RS09945 SM00346 helix_turn_helix isocitrate lyase regulation LFZ88_RS09960 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LFZ88_RS09960 SM00245 tail specific protease LFZ88_RS09965 SM00945 ProQ/FINO family LFZ88_RS09970 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LFZ88_RS10125 SM00506 Appr-1"-p processing enzyme LFZ88_RS10195 SM00479 LFZ88_RS10195 LFZ88_RS10275 SM00257 Lysin motif LFZ88_RS10285 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS10295 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS10300 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LFZ88_RS10375 SM00836 DALR anticodon binding domain LFZ88_RS10375 SM01016 Arginyl tRNA synthetase N terminal dom LFZ88_RS10410 SM00448 cheY-homologous receiver domain LFZ88_RS10415 SM00448 cheY-homologous receiver domain LFZ88_RS10420 SM00138 Methyltransferase, chemotaxis proteins LFZ88_RS10425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LFZ88_RS10425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS10425 SM00319 Homologues of the ligand binding domain of Tar LFZ88_RS10430 SM00260 Two component signalling adaptor domain LFZ88_RS10435 SM00073 Histidine Phosphotransfer domain LFZ88_RS10435 SM00260 Two component signalling adaptor domain LFZ88_RS10435 SM00387 Histidine kinase-like ATPases LFZ88_RS10435 SM01231 LFZ88_RS10435 LFZ88_RS10555 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LFZ88_RS10555 SM00465 GIY-YIG type nucleases (URI domain) LFZ88_RS10560 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS10560 SM00448 cheY-homologous receiver domain LFZ88_RS10570 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS10575 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS10630 SM00642 Alpha-amylase domain LFZ88_RS10675 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS10725 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS10745 SM00267 diguanylate cyclase LFZ88_RS10775 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LFZ88_RS10800 SM00357 Cold shock protein domain LFZ88_RS10965 SM00507 HNH nucleases LFZ88_RS11005 SM00507 HNH nucleases LFZ88_RS11010 SM01252 LFZ88_RS11010 LFZ88_RS11050 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS11060 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS11065 SM00994 ClpX C4-type zinc finger LFZ88_RS11170 SM00671 Sel1-like repeats. LFZ88_RS11230 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS11240 SM00226 Low molecular weight phosphatase family LFZ88_RS11245 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LFZ88_RS11280 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS11360 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS11370 SM00877 LFZ88_RS11370 LFZ88_RS11375 SM00877 LFZ88_RS11375 LFZ88_RS11405 SM00877 LFZ88_RS11405 LFZ88_RS11410 SM00877 LFZ88_RS11410 LFZ88_RS11450 SM00877 LFZ88_RS11450 LFZ88_RS11455 SM00877 LFZ88_RS11455 LFZ88_RS11490 SM00871 Bacterial transcription activator, effector binding domain LFZ88_RS11495 SM00936 Penicillin-binding protein 5, C-terminal domain LFZ88_RS11510 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS11530 SM00479 LFZ88_RS11530 LFZ88_RS11600 SM00984 UDP binding domain LFZ88_RS11610 SM01350 LFZ88_RS11610 LFZ88_RS11805 SM00226 Low molecular weight phosphatase family LFZ88_RS11820 SM01091 Transporter associated domain LFZ88_RS11840 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS11840 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LFZ88_RS11840 SM00091 PAS domain LFZ88_RS11840 SM00267 diguanylate cyclase LFZ88_RS11845 SM00478 endonuclease III LFZ88_RS11845 SM01009 AlkA N-terminal domain LFZ88_RS11880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS11880 SM00387 Histidine kinase-like ATPases LFZ88_RS11880 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS11885 SM00448 cheY-homologous receiver domain LFZ88_RS11885 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS11965 SM00046 Diacylglycerol kinase catalytic domain (presumed) LFZ88_RS11970 SM01133 LFZ88_RS11970 LFZ88_RS11990 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS11990 SM00866 LFZ88_RS11990 LFZ88_RS12060 SM00448 cheY-homologous receiver domain LFZ88_RS12060 SM00850 LytTr DNA-binding domain LFZ88_RS12065 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LFZ88_RS12065 SM00387 Histidine kinase-like ATPases LFZ88_RS12070 SM00422 helix_turn_helix, mercury resistance LFZ88_RS12085 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS12100 SM01217 LFZ88_RS12100 LFZ88_RS12220 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS12230 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS12255 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS12300 SM00518 AP endonuclease family 2 LFZ88_RS12335 SM00841 Elongation factor P, C-terminal LFZ88_RS12335 SM01185 LFZ88_RS12335 LFZ88_RS12345 SM00014 Acid phosphatase homologues LFZ88_RS12365 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS12385 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS12405 SM00363 S4 RNA-binding domain LFZ88_RS12410 SM00487 DEAD-like helicases superfamily LFZ88_RS12410 SM00490 helicase superfamily c-terminal domain LFZ88_RS12455 SM00364 Leucine-rich repeats, bacterial type LFZ88_RS12455 SM00369 Leucine-rich repeats, typical (most populated) subfamily LFZ88_RS12485 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS12485 SM00448 cheY-homologous receiver domain LFZ88_RS12525 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS12550 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS12570 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS12580 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS12600 SM00387 Histidine kinase-like ATPases LFZ88_RS12605 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS12605 SM00448 cheY-homologous receiver domain LFZ88_RS12610 SM00387 Histidine kinase-like ATPases LFZ88_RS12610 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS12610 SM00448 cheY-homologous receiver domain LFZ88_RS12615 SM00434 DNA Topoisomerase IV LFZ88_RS12625 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LFZ88_RS12635 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS12635 SM00895 LFZ88_RS12635 LFZ88_RS12720 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LFZ88_RS12725 SM00346 helix_turn_helix isocitrate lyase regulation LFZ88_RS12730 SM00852 Probable molybdopterin binding domain LFZ88_RS12795 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LFZ88_RS12835 SM00260 Two component signalling adaptor domain LFZ88_RS12835 SM00448 cheY-homologous receiver domain LFZ88_RS12840 SM00327 von Willebrand factor (vWF) type A domain LFZ88_RS12880 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS12880 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LFZ88_RS12885 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LFZ88_RS12925 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LFZ88_RS12965 SM00861 Transketolase, pyrimidine binding domain LFZ88_RS12995 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS13025 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS13040 SM00062 Bacterial periplasmic substrate-binding proteins LFZ88_RS13045 SM00062 Bacterial periplasmic substrate-binding proteins LFZ88_RS13080 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS13120 SM00859 Semialdehyde dehydrogenase, NAD binding domain LFZ88_RS13145 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS13165 SM00825 Beta-ketoacyl synthase LFZ88_RS13205 SM00463 Small MutS-related domain LFZ88_RS13255 SM00448 cheY-homologous receiver domain LFZ88_RS13260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS13260 SM00387 Histidine kinase-like ATPases LFZ88_RS13260 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS13340 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS13340 SM00267 diguanylate cyclase LFZ88_RS13440 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LFZ88_RS13440 SM00292 breast cancer carboxy-terminal domain LFZ88_RS13440 SM00532 Ligase N family LFZ88_RS13445 SM00771 ZipA, C-terminal domain (FtsZ-binding) LFZ88_RS13490 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS13520 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS13540 SM00822 LFZ88_RS13540 LFZ88_RS13565 SM00646 LFZ88_RS13565 LFZ88_RS13580 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS13585 SM00877 LFZ88_RS13585 LFZ88_RS13590 SM00877 LFZ88_RS13590 LFZ88_RS13635 SM00877 LFZ88_RS13635 LFZ88_RS13660 SM00877 LFZ88_RS13660 LFZ88_RS13665 SM00919 Malic enzyme, NAD binding domain LFZ88_RS13665 SM01274 LFZ88_RS13665 LFZ88_RS13680 SM00861 Transketolase, pyrimidine binding domain LFZ88_RS13710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS13710 SM00387 Histidine kinase-like ATPases LFZ88_RS13760 SM01130 LFZ88_RS13760 LFZ88_RS13845 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS13845 SM00267 diguanylate cyclase LFZ88_RS13875 SM00116 Domain in cystathionine beta-synthase and other proteins. LFZ88_RS13875 SM01240 LFZ88_RS13875 LFZ88_RS13885 SM00869 Autotransporter beta-domain LFZ88_RS13925 SM00564 beta-propeller repeat LFZ88_RS13945 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS13960 SM00562 LFZ88_RS13960 LFZ88_RS13980 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS13990 SM01359 LFZ88_RS13990 LFZ88_RS13990 SM01360 LFZ88_RS13990 LFZ88_RS13995 SM00450 Rhodanese Homology Domain LFZ88_RS14035 SM00271 DnaJ molecular chaperone homology domain LFZ88_RS14120 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS14140 SM00938 Nitrogen regulatory protein P-II LFZ88_RS14145 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS14145 SM00448 cheY-homologous receiver domain LFZ88_RS14155 SM00387 Histidine kinase-like ATPases LFZ88_RS14155 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS14160 SM01211 LFZ88_RS14160 LFZ88_RS14170 SM00062 Bacterial periplasmic substrate-binding proteins LFZ88_RS14240 SM00358 Double-stranded RNA binding motif LFZ88_RS14240 SM00535 Ribonuclease III family LFZ88_RS14295 SM00487 DEAD-like helicases superfamily LFZ88_RS14295 SM00490 helicase superfamily c-terminal domain LFZ88_RS14315 SM00986 Uracil DNA glycosylase superfamily LFZ88_RS14315 SM00987 UreE urease accessory protein, C-terminal domain LFZ88_RS14320 SM00967 RNA 2'-O ribose methyltransferase substrate binding LFZ88_RS14330 SM01144 LFZ88_RS14330 LFZ88_RS14335 SM00881 CoA binding domain LFZ88_RS14340 SM00155 Phospholipase D. Active site motifs. LFZ88_RS14390 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS14390 SM01086 C-terminal, D2-small domain, of ClpB protein LFZ88_RS14400 SM00363 S4 RNA-binding domain LFZ88_RS14415 SM00830 Chorismate mutase type II LFZ88_RS14425 SM00830 Chorismate mutase type II LFZ88_RS14440 SM00267 diguanylate cyclase LFZ88_RS14465 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS14465 SM00962 SRP54-type protein, GTPase domain LFZ88_RS14465 SM00963 SRP54-type protein, helical bundle domain LFZ88_RS14475 SM01091 Transporter associated domain LFZ88_RS14535 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS14585 SM00060 Fibronectin type 3 domain LFZ88_RS14600 SM00232 JAB/MPN domain LFZ88_RS14630 SM00635 Bacterial Ig-like domain 2 LFZ88_RS14725 SM01321 LFZ88_RS14725 LFZ88_RS14780 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS14785 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS14860 SM00857 Resolvase, N terminal domain LFZ88_RS14875 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS14930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS14930 SM00387 Histidine kinase-like ATPases LFZ88_RS14930 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS14935 SM00448 cheY-homologous receiver domain LFZ88_RS14935 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS14980 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS14980 SM00895 LFZ88_RS14980 LFZ88_RS14985 SM00257 Lysin motif LFZ88_RS14985 SM00749 bacterial OsmY and nodulation domain LFZ88_RS14995 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LFZ88_RS15000 SM00450 Rhodanese Homology Domain LFZ88_RS15010 SM00528 Domain in histone-like proteins of HNS family LFZ88_RS15035 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS15070 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS15090 SM00347 helix_turn_helix multiple antibiotic resistance protein LFZ88_RS15165 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LFZ88_RS15180 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS15225 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS15225 SM01134 LFZ88_RS15225 LFZ88_RS15235 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LFZ88_RS15235 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS15240 SM00849 Metallo-beta-lactamase superfamily LFZ88_RS15340 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LFZ88_RS15340 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS15355 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS15385 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS15425 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS15430 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS15440 SM00194 Protein tyrosine phosphatase, catalytic domain LFZ88_RS15440 SM00404 Protein tyrosine phosphatase, catalytic domain motif LFZ88_RS15520 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS15545 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS15600 SM00533 DNA-binding domain of DNA mismatch repair MUTS family LFZ88_RS15600 SM00534 ATPase domain of DNA mismatch repair MUTS family LFZ88_RS15635 SM01007 Class II Aldolase and Adducin N-terminal domain LFZ88_RS15650 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS15650 SM01134 LFZ88_RS15650 LFZ88_RS15655 SM00347 helix_turn_helix multiple antibiotic resistance protein LFZ88_RS15680 SM00257 Lysin motif LFZ88_RS15750 SM01101 LFZ88_RS15750 LFZ88_RS15775 SM00487 DEAD-like helicases superfamily LFZ88_RS15825 SM00849 Metallo-beta-lactamase superfamily LFZ88_RS15835 SM01192 LFZ88_RS15835 LFZ88_RS15835 SM01193 LFZ88_RS15835 LFZ88_RS15865 SM00954 Region found in RelA / SpoT proteins LFZ88_RS15875 SM00073 Histidine Phosphotransfer domain LFZ88_RS15875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS15875 SM00387 Histidine kinase-like ATPases LFZ88_RS15875 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS15875 SM00448 cheY-homologous receiver domain LFZ88_RS15885 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LFZ88_RS15890 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LFZ88_RS15955 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LFZ88_RS15955 SM00475 5'-3' exonuclease LFZ88_RS15965 SM01007 Class II Aldolase and Adducin N-terminal domain LFZ88_RS15990 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS15990 SM01134 LFZ88_RS15990 LFZ88_RS16035 SM00925 MltA specific insert domain LFZ88_RS16050 SM00646 LFZ88_RS16050 LFZ88_RS16060 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS16115 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LFZ88_RS16125 SM00927 DNA mismatch repair enzyme MutH LFZ88_RS16150 SM00563 Phosphate acyltransferases LFZ88_RS16155 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS16160 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS16305 SM00257 Lysin motif LFZ88_RS16325 SM00937 LFZ88_RS16325 LFZ88_RS16380 SM01022 LFZ88_RS16380 LFZ88_RS16430 SM01011 Aminopeptidase P, N-terminal domain LFZ88_RS16505 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LFZ88_RS16530 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS16535 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS16540 SM00861 Transketolase, pyrimidine binding domain LFZ88_RS16570 SM00829 Enoylreductase LFZ88_RS16590 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS16590 SM00895 LFZ88_RS16590 LFZ88_RS16625 SM00731 SprT homologues. LFZ88_RS16650 SM00732 Likely ribonuclease with RNase H fold. LFZ88_RS16655 SM00346 helix_turn_helix isocitrate lyase regulation LFZ88_RS16660 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS16675 SM01152 LFZ88_RS16675 LFZ88_RS16685 SM00729 Elongator protein 3, MiaB family, Radical SAM LFZ88_RS16695 SM00870 LFZ88_RS16695 LFZ88_RS16720 SM00478 endonuclease III LFZ88_RS16720 SM00525 LFZ88_RS16720 LFZ88_RS16795 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS16865 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LFZ88_RS16940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LFZ88_RS16940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS16990 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS17020 SM00729 Elongator protein 3, MiaB family, Radical SAM LFZ88_RS17045 SM00563 Phosphate acyltransferases LFZ88_RS17050 SM00434 DNA Topoisomerase IV LFZ88_RS17055 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS17055 SM00871 Bacterial transcription activator, effector binding domain LFZ88_RS17065 SM00448 cheY-homologous receiver domain LFZ88_RS17065 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS17070 SM00387 Histidine kinase-like ATPases LFZ88_RS17070 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS17085 SM00387 Histidine kinase-like ATPases LFZ88_RS17085 SM00433 TopoisomeraseII LFZ88_RS17180 SM00244 prohibitin homologues LFZ88_RS17200 SM01118 LFZ88_RS17200 LFZ88_RS17205 SM00287 Bacterial SH3 domain homologues LFZ88_RS17210 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LFZ88_RS17220 SM00905 Dihydroneopterin aldolase LFZ88_RS17225 SM01207 LFZ88_RS17225 LFZ88_RS17250 SM00400 zinc finger LFZ88_RS17250 SM00493 LFZ88_RS17250 LFZ88_RS17250 SM00766 DNA primase DnaG DnaB-binding LFZ88_RS17280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LFZ88_RS17280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS17285 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LFZ88_RS17285 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LFZ88_RS17470 SM00858 LFZ88_RS17470 LFZ88_RS17480 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS17480 SM01134 LFZ88_RS17480 LFZ88_RS17525 SM00829 Enoylreductase LFZ88_RS17530 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS17530 SM01134 LFZ88_RS17530 LFZ88_RS17555 SM00749 bacterial OsmY and nodulation domain LFZ88_RS17560 SM00859 Semialdehyde dehydrogenase, NAD binding domain LFZ88_RS17575 SM00465 GIY-YIG type nucleases (URI domain) LFZ88_RS17610 SM00487 DEAD-like helicases superfamily LFZ88_RS17610 SM00490 helicase superfamily c-terminal domain LFZ88_RS17615 SM00028 Tetratricopeptide repeats LFZ88_RS17620 SM00316 Ribosomal protein S1-like RNA-binding domain LFZ88_RS17620 SM00322 K homology RNA-binding domain LFZ88_RS17625 SM01387 LFZ88_RS17625 LFZ88_RS17645 SM00316 Ribosomal protein S1-like RNA-binding domain LFZ88_RS17645 SM00322 K homology RNA-binding domain LFZ88_RS17690 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS17705 SM01103 LFZ88_RS17705 LFZ88_RS17780 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS17810 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS17860 SM00073 Histidine Phosphotransfer domain LFZ88_RS17860 SM00091 PAS domain LFZ88_RS17860 SM00387 Histidine kinase-like ATPases LFZ88_RS17860 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS17860 SM00448 cheY-homologous receiver domain LFZ88_RS17865 SM00729 Elongator protein 3, MiaB family, Radical SAM LFZ88_RS17925 SM01130 LFZ88_RS17925 LFZ88_RS17930 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS17930 SM00895 LFZ88_RS17930 LFZ88_RS17970 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LFZ88_RS17975 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LFZ88_RS18015 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS18015 SM00895 LFZ88_RS18015 LFZ88_RS18020 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS18080 SM00316 Ribosomal protein S1-like RNA-binding domain LFZ88_RS18115 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS18115 SM00267 diguanylate cyclase LFZ88_RS18120 SM00829 Enoylreductase LFZ88_RS18140 SM00878 Biotin carboxylase C-terminal domain LFZ88_RS18180 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS18180 SM00267 diguanylate cyclase LFZ88_RS18310 SM00422 helix_turn_helix, mercury resistance LFZ88_RS18325 SM00662 RNA polymerases D LFZ88_RS18330 SM00363 S4 RNA-binding domain LFZ88_RS18330 SM01390 LFZ88_RS18330 LFZ88_RS18395 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LFZ88_RS18400 SM01374 LFZ88_RS18400 LFZ88_RS18420 SM00322 K homology RNA-binding domain LFZ88_RS18435 SM01382 LFZ88_RS18435 LFZ88_RS18435 SM01383 LFZ88_RS18435 LFZ88_RS18455 SM01403 LFZ88_RS18455 LFZ88_RS18495 SM00838 Elongation factor G C-terminus LFZ88_RS18495 SM00889 Elongation factor G, domain IV LFZ88_RS18560 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS18595 SM00100 Cyclic nucleotide-monophosphate binding domain LFZ88_RS18595 SM00419 helix_turn_helix, cAMP Regulatory protein LFZ88_RS18655 SM00869 Autotransporter beta-domain LFZ88_RS18750 SM00363 S4 RNA-binding domain LFZ88_RS18770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS18770 SM00387 Histidine kinase-like ATPases LFZ88_RS18770 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS18775 SM00448 cheY-homologous receiver domain LFZ88_RS18775 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS18785 SM00316 Ribosomal protein S1-like RNA-binding domain LFZ88_RS18785 SM00732 Likely ribonuclease with RNase H fold. LFZ88_RS18795 SM00899 LFZ88_RS18795 LFZ88_RS18845 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS18870 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS18875 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS18875 SM01134 LFZ88_RS18875 LFZ88_RS18885 SM00450 Rhodanese Homology Domain LFZ88_RS18920 SM01130 LFZ88_RS18920 LFZ88_RS18925 SM00346 helix_turn_helix isocitrate lyase regulation LFZ88_RS18945 SM00642 Alpha-amylase domain LFZ88_RS18950 SM00642 Alpha-amylase domain LFZ88_RS18955 SM00859 Semialdehyde dehydrogenase, NAD binding domain LFZ88_RS18970 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS18990 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS19025 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS19055 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS19060 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS19100 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS19105 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS19105 SM00962 SRP54-type protein, GTPase domain LFZ88_RS19105 SM00963 SRP54-type protein, helical bundle domain LFZ88_RS19135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LFZ88_RS19135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS19135 SM00319 Homologues of the ligand binding domain of Tar LFZ88_RS19180 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS19225 SM00014 Acid phosphatase homologues LFZ88_RS19240 SM00870 LFZ88_RS19240 LFZ88_RS19260 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS19260 SM00866 LFZ88_RS19260 LFZ88_RS19280 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS19305 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS19325 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS19325 SM00267 diguanylate cyclase LFZ88_RS19335 SM00028 Tetratricopeptide repeats LFZ88_RS19395 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS19400 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS19435 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS19530 SM00357 Cold shock protein domain LFZ88_RS19605 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS19610 SM00047 Lysozyme subfamily 2 LFZ88_RS19615 SM00642 Alpha-amylase domain LFZ88_RS19630 SM00346 helix_turn_helix isocitrate lyase regulation LFZ88_RS19670 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family LFZ88_RS19680 SM01007 Class II Aldolase and Adducin N-terminal domain LFZ88_RS19685 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS19770 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS19770 SM00895 LFZ88_RS19770 LFZ88_RS19785 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS19795 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LFZ88_RS19805 SM00971 Serine acetyltransferase, N-terminal LFZ88_RS19825 SM00450 Rhodanese Homology Domain LFZ88_RS19850 SM00829 Enoylreductase LFZ88_RS19940 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain LFZ88_RS19940 SM01232 LFZ88_RS19940 LFZ88_RS20000 SM00849 Metallo-beta-lactamase superfamily LFZ88_RS20010 SM00532 Ligase N family LFZ88_RS20015 SM00072 Guanylate kinase homologues. LFZ88_RS20020 SM01409 LFZ88_RS20020 LFZ88_RS20025 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LFZ88_RS20025 SM00954 Region found in RelA / SpoT proteins LFZ88_RS20035 SM00487 DEAD-like helicases superfamily LFZ88_RS20035 SM00490 helicase superfamily c-terminal domain LFZ88_RS20080 SM00869 Autotransporter beta-domain LFZ88_RS20090 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS20105 SM00831 Cation transporter/ATPase, N-terminus LFZ88_RS20165 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS20190 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS20210 SM00387 Histidine kinase-like ATPases LFZ88_RS20215 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS20215 SM00448 cheY-homologous receiver domain LFZ88_RS20235 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS20235 SM01134 LFZ88_RS20235 LFZ88_RS20365 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS20370 SM01235 LFZ88_RS20370 LFZ88_RS20390 SM00448 cheY-homologous receiver domain LFZ88_RS20390 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS20400 SM00073 Histidine Phosphotransfer domain LFZ88_RS20400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS20400 SM00387 Histidine kinase-like ATPases LFZ88_RS20400 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS20400 SM00448 cheY-homologous receiver domain LFZ88_RS20410 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LFZ88_RS20425 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS20425 SM00895 LFZ88_RS20425 LFZ88_RS20440 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LFZ88_RS20450 SM00387 Histidine kinase-like ATPases LFZ88_RS20450 SM00433 TopoisomeraseII LFZ88_RS20460 SM00480 DNA polymerase III beta subunit LFZ88_RS20465 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS20465 SM00760 Bacterial dnaA protein helix-turn-helix domain LFZ88_RS20480 SM01234 LFZ88_RS20480 LFZ88_RS20555 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS20615 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS20660 SM01228 LFZ88_RS20660 LFZ88_RS20675 SM00344 helix_turn_helix ASNC type LFZ88_RS20685 SM00327 von Willebrand factor (vWF) type A domain LFZ88_RS20690 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS20705 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS20725 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS20735 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS20735 SM00895 LFZ88_RS20735 LFZ88_RS20780 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS20855 SM00487 DEAD-like helicases superfamily LFZ88_RS20855 SM00490 helicase superfamily c-terminal domain LFZ88_RS20870 SM00357 Cold shock protein domain LFZ88_RS20870 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS20870 SM00959 Rho termination factor, N-terminal domain LFZ88_RS20890 SM00984 UDP binding domain LFZ88_RS20990 SM01219 LFZ88_RS20990 LFZ88_RS21075 SM00341 Helicase and RNase D C-terminal LFZ88_RS21075 SM00487 DEAD-like helicases superfamily LFZ88_RS21075 SM00490 helicase superfamily c-terminal domain LFZ88_RS21075 SM00956 LFZ88_RS21075 LFZ88_RS21170 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. LFZ88_RS21290 SM00563 Phosphate acyltransferases LFZ88_RS21300 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LFZ88_RS21300 SM00474 3'-5' exonuclease LFZ88_RS21300 SM00475 5'-3' exonuclease LFZ88_RS21300 SM00482 DNA polymerase A domain LFZ88_RS21320 SM00729 Elongator protein 3, MiaB family, Radical SAM LFZ88_RS21325 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS21325 SM00448 cheY-homologous receiver domain LFZ88_RS21330 SM00091 PAS domain LFZ88_RS21330 SM00387 Histidine kinase-like ATPases LFZ88_RS21330 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS21345 SM01230 LFZ88_RS21345 LFZ88_RS21370 SM00729 Elongator protein 3, MiaB family, Radical SAM LFZ88_RS21425 SM01133 LFZ88_RS21425 LFZ88_RS21440 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS21440 SM01134 LFZ88_RS21440 LFZ88_RS21465 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS21485 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS21510 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS21540 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS21555 SM01007 Class II Aldolase and Adducin N-terminal domain LFZ88_RS21570 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS21575 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS21620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS21620 SM00387 Histidine kinase-like ATPases LFZ88_RS21620 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS21625 SM00448 cheY-homologous receiver domain LFZ88_RS21625 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS21640 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS21680 SM00487 DEAD-like helicases superfamily LFZ88_RS21680 SM00491 LFZ88_RS21680 LFZ88_RS21860 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS21860 SM00866 LFZ88_RS21860 LFZ88_RS21885 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS21905 SM01133 LFZ88_RS21905 LFZ88_RS21970 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS21970 SM01086 C-terminal, D2-small domain, of ClpB protein LFZ88_RS21985 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS21990 SM00487 DEAD-like helicases superfamily LFZ88_RS21990 SM00490 helicase superfamily c-terminal domain LFZ88_RS22100 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS22120 SM00859 Semialdehyde dehydrogenase, NAD binding domain LFZ88_RS22250 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. LFZ88_RS22250 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LFZ88_RS22255 SM00649 Ribosomal protein L11/L12 LFZ88_RS22285 SM00663 RNA polymerase I subunit A N-terminus LFZ88_RS22315 SM00876 Biotin and Thiamin Synthesis associated domain LFZ88_RS22370 SM00411 bacterial (prokaryotic) histone like domain LFZ88_RS22385 SM00387 Histidine kinase-like ATPases LFZ88_RS22385 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS22390 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS22390 SM00448 cheY-homologous receiver domain LFZ88_RS22395 SM01209 LFZ88_RS22395 LFZ88_RS22395 SM01210 LFZ88_RS22395 LFZ88_RS22400 SM00798 AICARFT/IMPCHase bienzyme LFZ88_RS22400 SM00851 MGS-like domain LFZ88_RS22455 SM01022 LFZ88_RS22455 LFZ88_RS22460 SM00346 helix_turn_helix isocitrate lyase regulation LFZ88_RS22465 SM01018 B12 binding domain LFZ88_RS22485 SM00363 S4 RNA-binding domain LFZ88_RS22495 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS22495 SM01134 LFZ88_RS22495 LFZ88_RS22680 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS22705 SM00563 Phosphate acyltransferases LFZ88_RS22750 SM00829 Enoylreductase LFZ88_RS22755 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS22760 SM01005 Alanine racemase, C-terminal domain LFZ88_RS22835 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS22845 SM00052 Putative diguanylate phosphodiesterase LFZ88_RS22850 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS22855 SM00422 helix_turn_helix, mercury resistance LFZ88_RS22950 SM00028 Tetratricopeptide repeats LFZ88_RS22960 SM00671 Sel1-like repeats. LFZ88_RS22970 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS23000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS23000 SM00387 Histidine kinase-like ATPases LFZ88_RS23000 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS23005 SM00448 cheY-homologous receiver domain LFZ88_RS23005 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS23020 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS23030 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS23060 SM00448 cheY-homologous receiver domain LFZ88_RS23065 SM00091 PAS domain LFZ88_RS23065 SM00387 Histidine kinase-like ATPases LFZ88_RS23070 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LFZ88_RS23105 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS23110 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS23145 SM00014 Acid phosphatase homologues LFZ88_RS23195 SM00883 Chaperonin 10 Kd subunit LFZ88_RS23220 SM00841 Elongation factor P, C-terminal LFZ88_RS23220 SM01185 LFZ88_RS23220 LFZ88_RS23235 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS23300 SM00479 LFZ88_RS23300 LFZ88_RS23305 SM00062 Bacterial periplasmic substrate-binding proteins LFZ88_RS23305 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LFZ88_RS23340 SM00646 LFZ88_RS23340 LFZ88_RS23345 SM00853 MutL C terminal dimerisation domain LFZ88_RS23345 SM01340 LFZ88_RS23345 LFZ88_RS23365 SM00244 prohibitin homologues LFZ88_RS23370 SM00244 prohibitin homologues LFZ88_RS23380 SM00788 Adenylosuccinate synthetase LFZ88_RS23390 SM00316 Ribosomal protein S1-like RNA-binding domain LFZ88_RS23390 SM00357 Cold shock protein domain LFZ88_RS23390 SM00955 LFZ88_RS23390 LFZ88_RS23395 SM00967 RNA 2'-O ribose methyltransferase substrate binding LFZ88_RS23455 SM00420 helix_turn_helix, Deoxyribose operon repressor LFZ88_RS23455 SM01134 LFZ88_RS23455 LFZ88_RS23480 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family LFZ88_RS23490 SM01007 Class II Aldolase and Adducin N-terminal domain LFZ88_RS23610 SM01091 Transporter associated domain LFZ88_RS23740 SM00642 Alpha-amylase domain LFZ88_RS23750 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS23755 SM00831 Cation transporter/ATPase, N-terminus LFZ88_RS23880 SM00354 helix_turn _helix lactose operon repressor LFZ88_RS23905 SM00829 Enoylreductase LFZ88_RS23930 SM00487 DEAD-like helicases superfamily LFZ88_RS24110 SM00345 helix_turn_helix gluconate operon transcriptional repressor LFZ88_RS24110 SM00895 LFZ88_RS24110 LFZ88_RS24195 SM00487 DEAD-like helicases superfamily LFZ88_RS24255 SM00833 Cobalamin synthesis protein cobW C-terminal domain LFZ88_RS24270 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LFZ88_RS24270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS24270 SM00319 Homologues of the ligand binding domain of Tar LFZ88_RS24275 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS24320 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS24340 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS24345 SM00421 helix_turn_helix, Lux Regulon LFZ88_RS24360 SM00267 diguanylate cyclase LFZ88_RS24410 SM00749 bacterial OsmY and nodulation domain LFZ88_RS24440 SM01133 LFZ88_RS24440 LFZ88_RS24445 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain LFZ88_RS24505 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS24510 SM00530 Helix-turn-helix XRE-family like proteins LFZ88_RS24515 SM00382 ATPases associated with a variety of cellular activities LFZ88_RS24540 SM00855 Phosphoglycerate mutase family LFZ88_RS24545 SM00342 helix_turn_helix, arabinose operon control protein LFZ88_RS24545 SM00871 Bacterial transcription activator, effector binding domain LFZ88_RS24555 SM00448 cheY-homologous receiver domain LFZ88_RS24555 SM00862 Transcriptional regulatory protein, C terminal LFZ88_RS24560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LFZ88_RS24560 SM00387 Histidine kinase-like ATPases LFZ88_RS24560 SM00388 His Kinase A (phosphoacceptor) domain LFZ88_RS24605 SM00448 cheY-homologous receiver domain LFZ88_RS24605 SM00862 Transcriptional regulatory protein, C terminal