locus-tag class description E3397_RS00005 PF11638 DnaA N-terminal domain E3397_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix E3397_RS00005 PF00308 Bacterial dnaA protein E3397_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain E3397_RS00010 PF02767 DNA polymerase III beta subunit, central domain E3397_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain E3397_RS00015 PF02463 RecF/RecN/SMC N terminal domain E3397_RS00020 PF00204 DNA gyrase B E3397_RS00020 PF01751 Toprim domain E3397_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS00020 PF18053 DNA gyrase B subunit insert domain E3397_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus E3397_RS00025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS00025 PF03466 LysR substrate binding domain E3397_RS00030 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3397_RS00030 PF13378 Enolase C-terminal domain-like E3397_RS00035 PF07690 Major Facilitator Superfamily E3397_RS00045 PF00392 Bacterial regulatory proteins, gntR family E3397_RS00045 PF07729 FCD domain E3397_RS00050 PF05035 2-keto-3-deoxy-galactonokinase E3397_RS00055 PF01081 KDPG and KHG aldolase E3397_RS00060 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3397_RS00060 PF13378 Enolase C-terminal domain-like E3397_RS00065 PF07690 Major Facilitator Superfamily E3397_RS00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS00070 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS00070 PF01627 Hpt domain E3397_RS00070 PF00072 Response regulator receiver domain E3397_RS00070 PF00672 HAMP domain E3397_RS00075 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E3397_RS00080 PF00486 Transcriptional regulatory protein, C terminal E3397_RS00080 PF00072 Response regulator receiver domain E3397_RS00085 PF03264 NapC/NirT cytochrome c family, N-terminal region E3397_RS00090 PF00384 Molybdopterin oxidoreductase E3397_RS00090 PF01568 Molydopterin dinucleotide binding domain E3397_RS00090 PF18364 Molybdopterin oxidoreductase N-terminal domain E3397_RS00095 PF02613 Nitrate reductase delta subunit E3397_RS00100 PF14376 Haem-binding domain E3397_RS00100 PF00034 Cytochrome c E3397_RS00100 PF03150 Di-haem cytochrome c peroxidase E3397_RS00105 PF00005 ABC transporter E3397_RS00110 PF03379 CcmB protein E3397_RS00115 PF01578 Cytochrome C assembly protein E3397_RS00120 PF04995 Heme exporter protein D (CcmD) E3397_RS00125 PF03100 CcmE E3397_RS00130 PF01578 Cytochrome C assembly protein E3397_RS00130 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E3397_RS00135 PF08534 Redoxin E3397_RS00140 PF03918 Cytochrome C biogenesis protein E3397_RS00145 PF07676 WD40-like Beta Propeller Repeat E3397_RS00145 PF12566 Protein of unknown function (DUF3748) E3397_RS00150 PF07119 Protein of unknown function (DUF1375) E3397_RS00155 PF00011 Hsp20/alpha crystallin family E3397_RS00160 PF00011 Hsp20/alpha crystallin family E3397_RS00165 PF06826 Predicted Permease Membrane Region E3397_RS00165 PF02080 TrkA-C domain E3397_RS00175 PF02656 Domain of unknown function (DUF202) E3397_RS00180 PF02656 Domain of unknown function (DUF202) E3397_RS00190 PF00291 Pyridoxal-phosphate dependent enzyme E3397_RS00195 PF02447 GntP family permease E3397_RS00200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS00200 PF03466 LysR substrate binding domain E3397_RS00210 PF07690 Major Facilitator Superfamily E3397_RS00220 PF13939 Toxin TisB, type I toxin-antitoxin system E3397_RS00230 PF08049 IlvB leader peptide E3397_RS00235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3397_RS00235 PF00205 Thiamine pyrophosphate enzyme, central domain E3397_RS00235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3397_RS00240 PF01842 ACT domain E3397_RS00245 PF00455 DeoR C terminal sensor domain E3397_RS00245 PF08220 DeoR-like helix-turn-helix domain E3397_RS00250 PF00294 pfkB family carbohydrate kinase E3397_RS00255 PF07690 Major Facilitator Superfamily E3397_RS00265 PF00196 Bacterial regulatory proteins, luxR family E3397_RS00265 PF00072 Response regulator receiver domain E3397_RS00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS00270 PF05231 MASE1 E3397_RS00270 PF07730 Histidine kinase E3397_RS00275 PF07690 Major Facilitator Superfamily E3397_RS00280 PF07690 Major Facilitator Superfamily E3397_RS00285 PF06711 Protein of unknown function (DUF1198) E3397_RS00290 PF00392 Bacterial regulatory proteins, gntR family E3397_RS00290 PF07702 UTRA domain E3397_RS00295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3397_RS00295 PF05043 Mga helix-turn-helix domain E3397_RS00295 PF08279 HTH domain E3397_RS00295 PF00874 PRD domain E3397_RS00300 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3397_RS00305 PF03611 PTS system sugar-specific permease component E3397_RS00315 PF01116 Fructose-bisphosphate aldolase class-II E3397_RS00335 PF07690 Major Facilitator Superfamily E3397_RS00340 PF00232 Glycosyl hydrolase family 1 E3397_RS00350 PF00874 PRD domain E3397_RS00350 PF00158 Sigma-54 interaction domain E3397_RS00360 PF03830 PTS system sorbose subfamily IIB component E3397_RS00360 PF03610 PTS system fructose IIA component E3397_RS00365 PF03609 PTS system sorbose-specific iic component E3397_RS00370 PF03613 PTS system mannose/fructose/sorbose family IID component E3397_RS00375 PF03841 L-seryl-tRNA selenium transferase E3397_RS00380 PF07071 KDGP aldolase E3397_RS00385 PF04754 Putative transposase, YhgA-like E3397_RS00390 PF00892 EamA-like transporter family E3397_RS00395 PF02308 MgtC family E3397_RS00400 PF00689 Cation transporting ATPase, C-terminus E3397_RS00400 PF00690 Cation transporter/ATPase, N-terminus E3397_RS00415 PF00857 Isochorismatase family E3397_RS00425 PF00486 Transcriptional regulatory protein, C terminal E3397_RS00435 PF03797 Autotransporter beta-domain E3397_RS00440 PF00196 Bacterial regulatory proteins, luxR family E3397_RS00465 PF01055 Glycosyl hydrolases family 31 E3397_RS00465 PF13802 Galactose mutarotase-like E3397_RS00470 PF05170 AsmA family E3397_RS00475 PF00860 Permease family E3397_RS00480 PF03616 Sodium/glutamate symporter E3397_RS00485 PF17191 RecG wedge domain E3397_RS00485 PF00270 DEAD/DEAH box helicase E3397_RS00485 PF00271 Helicase conserved C-terminal domain E3397_RS00490 PF12105 SpoU, rRNA methylase, C-terminal E3397_RS00490 PF00588 SpoU rRNA Methylase family E3397_RS00495 PF02824 TGS domain E3397_RS00495 PF13291 ACT domain E3397_RS00495 PF04607 Region found in RelA / SpoT proteins E3397_RS00500 PF01192 RNA polymerase Rpb6 E3397_RS00505 PF00625 Guanylate kinase E3397_RS00510 PF03120 NAD-dependent DNA ligase OB-fold domain E3397_RS00510 PF01653 NAD-dependent DNA ligase adenylation domain E3397_RS00515 PF03458 UPF0126 domain E3397_RS00525 PF03466 LysR substrate binding domain E3397_RS00525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS00530 PF08340 Domain of unknown function (DUF1732) E3397_RS00530 PF03755 YicC-like family, N-terminal region E3397_RS00535 PF03725 3' exoribonuclease family, domain 2 E3397_RS00535 PF01138 3' exoribonuclease family, domain 1 E3397_RS00540 PF00156 Phosphoribosyl transferase domain E3397_RS00545 PF00440 Bacterial regulatory proteins, tetR family E3397_RS00550 PF00692 dUTPase E3397_RS00555 PF02441 Flavoprotein E3397_RS00555 PF04127 DNA / pantothenate metabolism flavoprotein E3397_RS00560 PF04002 RadC-like JAB domain E3397_RS00565 PF00830 Ribosomal L28 family E3397_RS00570 PF00471 Ribosomal protein L33 E3397_RS00575 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E3397_RS00575 PF06827 Zinc finger found in FPG and IleRS E3397_RS00575 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E3397_RS00580 PF01467 Cytidylyltransferase-like E3397_RS00585 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) E3397_RS00590 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3397_RS00595 PF13439 Glycosyltransferase Family 4 E3397_RS00595 PF00534 Glycosyl transferases group 1 E3397_RS00615 PF00534 Glycosyl transferases group 1 E3397_RS00615 PF13439 Glycosyltransferase Family 4 E3397_RS00620 PF01501 Glycosyl transferase family 8 E3397_RS00620 PF08437 Glycosyl transferase family 8 C-terminal E3397_RS00625 PF08437 Glycosyl transferase family 8 C-terminal E3397_RS00625 PF01501 Glycosyl transferase family 8 E3397_RS00630 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) E3397_RS00640 PF00534 Glycosyl transferases group 1 E3397_RS00645 PF04932 O-Antigen ligase E3397_RS00650 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3397_RS00655 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3397_RS00660 PF01370 NAD dependent epimerase/dehydratase family E3397_RS00665 PF00155 Aminotransferase class I and II E3397_RS00670 PF00107 Zinc-binding dehydrogenase E3397_RS00670 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS00680 PF00535 Glycosyl transferase family 2 E3397_RS00685 PF04748 Divergent polysaccharide deacetylase E3397_RS00690 PF01551 Peptidase family M23 E3397_RS00695 PF06415 BPG-independent PGAM N-terminus (iPGM_N) E3397_RS00695 PF01676 Metalloenzyme superfamily E3397_RS00700 PF00581 Rhodanese-like domain E3397_RS00705 PF00462 Glutaredoxin E3397_RS00710 PF02556 Preprotein translocase subunit SecB E3397_RS00715 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E3397_RS00715 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E3397_RS00720 PF00132 Bacterial transferase hexapeptide (six repeats) E3397_RS00720 PF06426 Serine acetyltransferase, N-terminal E3397_RS00725 PF07690 Major Facilitator Superfamily E3397_RS00730 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3397_RS00730 PF13378 Enolase C-terminal domain-like E3397_RS00735 PF00356 Bacterial regulatory proteins, lacI family E3397_RS00740 PF00588 SpoU rRNA Methylase family E3397_RS00745 PF01070 FMN-dependent dehydrogenase E3397_RS00750 PF07729 FCD domain E3397_RS00750 PF00392 Bacterial regulatory proteins, gntR family E3397_RS00755 PF02652 L-lactate permease E3397_RS00760 PF05662 Coiled stalk of trimeric autotransporter adhesin E3397_RS00760 PF05658 Head domain of trimeric autotransporter adhesin E3397_RS00760 PF03895 YadA-like membrane anchor domain E3397_RS00760 PF13018 Extended Signal Peptide of Type V secretion system E3397_RS00765 PF11622 Protein of unknown function (DUF3251) E3397_RS00770 PF10928 Protein of unknown function (DUF2810) E3397_RS00780 PF05068 Mannitol repressor E3397_RS00785 PF08125 Mannitol dehydrogenase C-terminal domain E3397_RS00785 PF01232 Mannitol dehydrogenase Rossmann domain E3397_RS00790 PF02378 Phosphotransferase system, EIIC E3397_RS00790 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3397_RS00790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3397_RS00800 PF11742 Protein of unknown function (DUF3302) E3397_RS00805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3397_RS00805 PF00529 HlyD membrane-fusion protein of T1SS E3397_RS00810 PF13417 Glutathione S-transferase, N-terminal domain E3397_RS00810 PF00043 Glutathione S-transferase, C-terminal domain E3397_RS00815 PF03841 L-seryl-tRNA selenium transferase E3397_RS00815 PF12390 Selenocysteine synthase N terminal E3397_RS00820 PF00009 Elongation factor Tu GTP binding domain E3397_RS00820 PF03144 Elongation factor Tu domain 2 E3397_RS00820 PF09106 Elongation factor SelB, winged helix E3397_RS00820 PF09107 Elongation factor SelB, winged helix E3397_RS00825 PF00480 ROK family E3397_RS00830 PF00171 Aldehyde dehydrogenase family E3397_RS00835 PF07944 Beta-L-arabinofuranosidase, GH127 E3397_RS00845 PF00596 Class II Aldolase and Adducin N-terminal domain E3397_RS00850 PF01261 Xylose isomerase-like TIM barrel E3397_RS00855 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E3397_RS00860 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3397_RS00860 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3397_RS00865 PF03480 Bacterial extracellular solute-binding protein, family 7 E3397_RS00870 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component E3397_RS00875 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component E3397_RS00880 PF16154 Domain of unknown function (DUF4862) E3397_RS00885 PF04074 YhcH/YjgK/YiaL E3397_RS00890 PF02615 Malate/L-lactate dehydrogenase E3397_RS00895 PF09339 IclR helix-turn-helix domain E3397_RS00895 PF01614 Bacterial transcriptional regulator E3397_RS00900 PF13247 4Fe-4S dicluster domain E3397_RS00905 PF00155 Aminotransferase class I and II E3397_RS00910 PF00128 Alpha amylase, catalytic domain E3397_RS00915 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase E3397_RS00920 PF12833 Helix-turn-helix domain E3397_RS00930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3397_RS00930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3397_RS00935 PF05360 yiaA/B two helix domain E3397_RS00940 PF01757 Acyltransferase family E3397_RS00950 PF13983 YsaB-like lipoprotein E3397_RS00955 PF02091 Glycyl-tRNA synthetase alpha subunit E3397_RS00960 PF05746 DALR anticodon binding domain E3397_RS00960 PF02092 Glycyl-tRNA synthetase beta subunit E3397_RS00965 PF00665 Integrase core domain E3397_RS00965 PF13333 Integrase core domain E3397_RS00965 PF13276 HTH-like domain E3397_RS00990 PF00313 'Cold-shock' DNA-binding domain E3397_RS00995 PF01381 Helix-turn-helix E3397_RS01000 PF11254 Protein of unknown function (DUF3053) E3397_RS01005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3397_RS01005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3397_RS01010 PF13488 Glycine zipper E3397_RS01010 PF00691 OmpA family E3397_RS01015 PF01568 Molydopterin dinucleotide binding domain E3397_RS01015 PF00384 Molybdopterin oxidoreductase E3397_RS01015 PF18364 Molybdopterin oxidoreductase N-terminal domain E3397_RS01020 PF00583 Acetyltransferase (GNAT) family E3397_RS01025 PF03352 Methyladenine glycosylase E3397_RS01030 PF03797 Autotransporter beta-domain E3397_RS01035 PF00419 Fimbrial protein E3397_RS01040 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS01040 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS01045 PF13953 PapC C-terminal domain E3397_RS01045 PF13954 PapC N-terminal domain E3397_RS01045 PF00577 Outer membrane usher protein E3397_RS01050 PF00419 Fimbrial protein E3397_RS01055 PF00419 Fimbrial protein E3397_RS01060 PF08019 Phosphoethanolamine transferase EptA/EptB E3397_RS01060 PF00884 Sulfatase E3397_RS01075 PF00356 Bacterial regulatory proteins, lacI family E3397_RS01085 PF00860 Permease family E3397_RS01090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3397_RS01095 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS01100 PF12911 N-terminal TM domain of oligopeptide transport permease C E3397_RS01100 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS01105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3397_RS01105 PF00005 ABC transporter E3397_RS01110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3397_RS01110 PF00005 ABC transporter E3397_RS01115 PF03222 Tryptophan/tyrosine permease family E3397_RS01125 PF13940 Toxin Ldr, type I toxin-antitoxin system E3397_RS01130 PF11658 Cellulose biosynthesis protein BcsG E3397_RS01135 PF11120 Cellulose biosynthesis protein BcsF E3397_RS01140 PF10995 Cellulose biosynthesis GIL E3397_RS01145 PF10945 Cellulose biosynthesis protein BcsR E3397_RS01150 PF06564 Cellulose biosynthesis protein BcsQ E3397_RS01155 PF00535 Glycosyl transferase family 2 E3397_RS01155 PF07238 PilZ domain E3397_RS01160 PF03170 Bacterial cellulose synthase subunit E3397_RS01165 PF01270 Glycosyl hydrolases family 8 E3397_RS01170 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) E3397_RS01170 PF13176 Tetratricopeptide repeat E3397_RS01175 PF00563 EAL domain E3397_RS01175 PF00672 HAMP domain E3397_RS01175 PF00990 Diguanylate cyclase, GGDEF domain E3397_RS01175 PF17154 Gammaproteobacterial periplasmic sensor domain E3397_RS01180 PF00375 Sodium:dicarboxylate symporter family E3397_RS01185 PF05193 Peptidase M16 inactive domain E3397_RS01185 PF00675 Insulinase (Peptidase family M16) E3397_RS01190 PF00294 pfkB family carbohydrate kinase E3397_RS01195 PF00563 EAL domain E3397_RS01200 PF05170 AsmA family E3397_RS01205 PF00083 Sugar (and other) transporter E3397_RS01205 PF07690 Major Facilitator Superfamily E3397_RS01210 PF03631 Virulence factor BrkB E3397_RS01215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS01215 PF03466 LysR substrate binding domain E3397_RS01220 PF00196 Bacterial regulatory proteins, luxR family E3397_RS01235 PF01204 Trehalase E3397_RS01240 PF07702 UTRA domain E3397_RS01240 PF00392 Bacterial regulatory proteins, gntR family E3397_RS01245 PF01380 SIS domain E3397_RS01250 PF00294 pfkB family carbohydrate kinase E3397_RS01255 PF03605 Anaerobic c4-dicarboxylate membrane transporter E3397_RS01260 PF17763 Glutaminase/Asparaginase C-terminal domain E3397_RS01260 PF00710 Asparaginase, N-terminal E3397_RS01265 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS01265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3397_RS01270 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ E3397_RS01275 PF01569 PAP2 superfamily E3397_RS01280 PF01432 Peptidase family M3 E3397_RS01285 PF04445 Putative SAM-dependent methyltransferase E3397_RS01290 PF00854 POT family E3397_RS01295 PF00582 Universal stress protein family E3397_RS01300 PF10625 Universal stress protein B (UspB) E3397_RS01305 PF01384 Phosphate transporter family E3397_RS01315 PF13533 Biotin-lipoyl like E3397_RS01320 PF00005 ABC transporter E3397_RS01330 PF01402 Ribbon-helix-helix protein, copG family E3397_RS01330 PF08753 NikR C terminal nickel binding domain E3397_RS01335 PF01648 4'-phosphopantetheinyl transferase superfamily E3397_RS01340 PF01594 AI-2E family transporter E3397_RS01345 PF07690 Major Facilitator Superfamily E3397_RS01350 PF08786 DcrB E3397_RS01355 PF02592 Putative vitamin uptake transporter E3397_RS01360 PF01206 Sulfurtransferase TusA E3397_RS01365 PF00672 HAMP domain E3397_RS01365 PF02203 Tar ligand binding domain homologue E3397_RS01365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3397_RS01370 PF00403 Heavy-metal-associated domain E3397_RS01375 PF07947 YhhN family E3397_RS01380 PF10694 Protein of unknown function (DUF2500) E3397_RS01385 PF06611 Protein of unknown function (DUF1145) E3397_RS01395 PF00448 SRP54-type protein, GTPase domain E3397_RS01395 PF02881 SRP54-type protein, helical bundle domain E3397_RS01400 PF00005 ABC transporter E3397_RS01405 PF18075 FtsX extracellular domain E3397_RS01405 PF02687 FtsX-like permease family E3397_RS01410 PF04542 Sigma-70 region 2 E3397_RS01410 PF04545 Sigma-70, region 4 E3397_RS01415 PF13458 Periplasmic binding protein E3397_RS01425 PF12568 Acetyltransferase (GNAT) domain, PanZ E3397_RS01430 PF13458 Periplasmic binding protein E3397_RS01435 PF02653 Branched-chain amino acid transport system / permease component E3397_RS01440 PF11862 Domain of unknown function (DUF3382) E3397_RS01440 PF02653 Branched-chain amino acid transport system / permease component E3397_RS01445 PF12399 Branched-chain amino acid ATP-binding cassette transporter E3397_RS01445 PF00005 ABC transporter E3397_RS01450 PF00005 ABC transporter E3397_RS01460 PF13416 Bacterial extracellular solute-binding protein E3397_RS01465 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS01470 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS01475 PF17912 MalK OB fold domain E3397_RS01475 PF00005 ABC transporter E3397_RS01480 PF03009 Glycerophosphoryl diester phosphodiesterase family E3397_RS01485 PF10956 Protein of unknown function (DUF2756) E3397_RS01495 PF02126 Phosphotriesterase family E3397_RS01510 PF00294 pfkB family carbohydrate kinase E3397_RS01515 PF00583 Acetyltransferase (GNAT) family E3397_RS01520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3397_RS01520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3397_RS01525 PF02678 Pirin E3397_RS01525 PF17954 Quercetinase C-terminal cupin domain E3397_RS01530 PF00356 Bacterial regulatory proteins, lacI family E3397_RS01530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E3397_RS01535 PF01202 Shikimate kinase E3397_RS01540 PF02447 GntP family permease E3397_RS01550 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3397_RS01550 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3397_RS01555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E3397_RS01555 PF00128 Alpha amylase, catalytic domain E3397_RS01555 PF02806 Alpha amylase, C-terminal all-beta domain E3397_RS01560 PF00128 Alpha amylase, catalytic domain E3397_RS01560 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E3397_RS01560 PF18390 Glycogen debranching enzyme C-terminal domain E3397_RS01565 PF00483 Nucleotidyl transferase E3397_RS01570 PF08323 Starch synthase catalytic domain E3397_RS01570 PF00534 Glycosyl transferases group 1 E3397_RS01575 PF00343 Carbohydrate phosphorylase E3397_RS01580 PF01614 Bacterial transcriptional regulator E3397_RS01580 PF09339 IclR helix-turn-helix domain E3397_RS01585 PF00701 Dihydrodipicolinate synthetase family E3397_RS01590 PF00920 Dehydratase family E3397_RS01595 PF07690 Major Facilitator Superfamily E3397_RS01600 PF00465 Iron-containing alcohol dehydrogenase E3397_RS01615 PF16901 C-terminal domain of alpha-glycerophosphate oxidase E3397_RS01615 PF01266 FAD dependent oxidoreductase E3397_RS01620 PF00581 Rhodanese-like domain E3397_RS01625 PF01694 Rhomboid family E3397_RS01625 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease E3397_RS01630 PF08220 DeoR-like helix-turn-helix domain E3397_RS01630 PF00455 DeoR C terminal sensor domain E3397_RS01635 PF00158 Sigma-54 interaction domain E3397_RS01635 PF06956 Regulator of RNA terminal phosphate cyclase E3397_RS01645 PF01139 tRNA-splicing ligase RtcB E3397_RS01650 PF01137 RNA 3'-terminal phosphate cyclase E3397_RS01650 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain E3397_RS01655 PF04221 RelB antitoxin E3397_RS01660 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ E3397_RS01665 PF17874 MalT-like TPR region E3397_RS01665 PF00196 Bacterial regulatory proteins, luxR family E3397_RS01670 PF00343 Carbohydrate phosphorylase E3397_RS01675 PF02446 4-alpha-glucanotransferase E3397_RS01680 PF02447 GntP family permease E3397_RS01685 PF01521 Iron-sulphur cluster biosynthesis E3397_RS01685 PF01106 NifU-like domain E3397_RS01690 PF00156 Phosphoribosyl transferase domain E3397_RS01695 PF00561 alpha/beta hydrolase fold E3397_RS01700 PF04754 Putative transposase, YhgA-like E3397_RS01705 PF09012 FeoC like transcriptional regulator E3397_RS01710 PF17910 FeoB cytosolic helical domain E3397_RS01710 PF02421 Ferrous iron transport protein B E3397_RS01710 PF07664 Ferrous iron transport protein B C terminus E3397_RS01710 PF07670 Nucleoside recognition E3397_RS01715 PF04023 FeoA domain E3397_RS01720 PF17674 HHH domain E3397_RS01720 PF16921 Tex protein YqgF-like domain E3397_RS01720 PF09371 Tex-like protein N-terminal domain E3397_RS01720 PF00575 S1 RNA binding domain E3397_RS01725 PF03449 Transcription elongation factor, N-terminal E3397_RS01725 PF01272 Transcription elongation factor, GreA/GreB, C-term E3397_RS01730 PF00072 Response regulator receiver domain E3397_RS01730 PF00486 Transcriptional regulatory protein, C terminal E3397_RS01735 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS01735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS01735 PF00672 HAMP domain E3397_RS01740 PF01293 Phosphoenolpyruvate carboxykinase E3397_RS01745 PF13687 Domain of unknown function (DUF4153) E3397_RS01750 PF01430 Hsp33 protein E3397_RS01755 PF01479 S4 domain E3397_RS01760 PF13419 Haloacid dehalogenase-like hydrolase E3397_RS01765 PF07095 Intracellular growth attenuator protein IgaA E3397_RS01770 PF00293 NUDIX domain E3397_RS01775 PF00912 Transglycosylase E3397_RS01775 PF00905 Penicillin binding protein transpeptidase domain E3397_RS01775 PF17092 Penicillin-binding protein OB-like domain E3397_RS01785 PF05137 Fimbrial assembly protein (PilN) E3397_RS01795 PF10748 DNA utilization proteins HofP E3397_RS01800 PF00263 Bacterial type II and III secretion system protein E3397_RS01800 PF03958 Bacterial type II/III secretion system short domain E3397_RS01805 PF01202 Shikimate kinase E3397_RS01810 PF01761 3-dehydroquinate synthase E3397_RS01815 PF05036 Sporulation related domain E3397_RS01820 PF02086 D12 class N6 adenine-specific DNA methyltransferase E3397_RS01825 PF00834 Ribulose-phosphate 3 epimerase family E3397_RS01830 PF13419 Haloacid dehalogenase-like hydrolase E3397_RS01835 PF00579 tRNA synthetases class I (W and Y) E3397_RS01840 PF13978 Protein of unknown function (DUF4223) E3397_RS01850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3397_RS01850 PF14824 Sirohaem biosynthesis protein central E3397_RS01850 PF10414 Sirohaem synthase dimerisation region E3397_RS01855 PF01226 Formate/nitrite transporter E3397_RS01860 PF13806 Rieske-like [2Fe-2S] domain E3397_RS01865 PF04324 BFD-like [2Fe-2S] binding domain E3397_RS01865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E3397_RS01865 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS01865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E3397_RS01865 PF18267 Rubredoxin NAD+ reductase C-terminal domain E3397_RS01870 PF07690 Major Facilitator Superfamily E3397_RS01875 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E3397_RS01880 PF10832 Protein of unknown function (DUF2559) E3397_RS01885 PF02661 Fic/DOC family E3397_RS01890 PF00117 Glutamine amidotransferase class-I E3397_RS01895 PF00202 Aminotransferase class-III E3397_RS01900 PF12805 FUSC-like inner membrane protein yccS E3397_RS01905 PF13545 Crp-like helix-turn-helix domain E3397_RS01905 PF00027 Cyclic nucleotide-binding domain E3397_RS01910 PF02566 OsmC-like protein E3397_RS01915 PF00485 Phosphoribulokinase / Uridine kinase family E3397_RS01920 PF06794 Uncharacterised protein family (UPF0270) E3397_RS01925 PF00561 alpha/beta hydrolase fold E3397_RS01930 PF08803 Putative mono-oxygenase ydhR E3397_RS01935 PF03466 LysR substrate binding domain E3397_RS01935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS01940 PF00005 ABC transporter E3397_RS01940 PF12848 ABC transporter E3397_RS01945 PF02525 Flavodoxin-like fold E3397_RS01950 PF02254 TrkA-N domain E3397_RS01950 PF00999 Sodium/hydrogen exchanger family E3397_RS01955 PF09526 Probable metal-binding protein (DUF2387) E3397_RS01960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3397_RS01965 PF04102 SlyX E3397_RS01970 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E3397_RS01970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3397_RS01975 PF08348 YheO-like PAS domain E3397_RS01975 PF13309 HTH domain E3397_RS01980 PF02635 DsrE/DsrF-like family E3397_RS01985 PF02635 DsrE/DsrF-like family E3397_RS01990 PF04077 DsrH like protein E3397_RS01995 PF00164 Ribosomal protein S12/S23 E3397_RS02000 PF00177 Ribosomal protein S7p/S5e E3397_RS02005 PF00679 Elongation factor G C-terminus E3397_RS02005 PF14492 Elongation Factor G, domain II E3397_RS02005 PF00009 Elongation factor Tu GTP binding domain E3397_RS02005 PF03144 Elongation factor Tu domain 2 E3397_RS02005 PF03764 Elongation factor G, domain IV E3397_RS02010 PF00009 Elongation factor Tu GTP binding domain E3397_RS02010 PF03144 Elongation factor Tu domain 2 E3397_RS02010 PF03143 Elongation factor Tu C-terminal domain E3397_RS02015 PF04324 BFD-like [2Fe-2S] binding domain E3397_RS02020 PF00210 Ferritin-like domain E3397_RS02025 PF01478 Type IV leader peptidase family E3397_RS02030 PF00338 Ribosomal protein S10p/S20e E3397_RS02035 PF00297 Ribosomal protein L3 E3397_RS02040 PF00573 Ribosomal protein L4/L1 family E3397_RS02045 PF00276 Ribosomal protein L23 E3397_RS02050 PF00181 Ribosomal Proteins L2, RNA binding domain E3397_RS02050 PF03947 Ribosomal Proteins L2, C-terminal domain E3397_RS02055 PF00203 Ribosomal protein S19 E3397_RS02060 PF00237 Ribosomal protein L22p/L17e E3397_RS02065 PF07650 KH domain E3397_RS02065 PF00189 Ribosomal protein S3, C-terminal domain E3397_RS02070 PF00252 Ribosomal protein L16p/L10e E3397_RS02075 PF00831 Ribosomal L29 protein E3397_RS02080 PF00366 Ribosomal protein S17 E3397_RS02085 PF00238 Ribosomal protein L14p/L23e E3397_RS02090 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E3397_RS02090 PF00467 KOW motif E3397_RS02095 PF00673 ribosomal L5P family C-terminus E3397_RS02095 PF00281 Ribosomal protein L5 E3397_RS02100 PF00253 Ribosomal protein S14p/S29e E3397_RS02105 PF00410 Ribosomal protein S8 E3397_RS02110 PF00347 Ribosomal protein L6 E3397_RS02115 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E3397_RS02120 PF03719 Ribosomal protein S5, C-terminal domain E3397_RS02120 PF00333 Ribosomal protein S5, N-terminal domain E3397_RS02125 PF00327 Ribosomal protein L30p/L7e E3397_RS02130 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E3397_RS02135 PF00344 SecY translocase E3397_RS02140 PF00444 Ribosomal protein L36 E3397_RS02145 PF00416 Ribosomal protein S13/S18 E3397_RS02150 PF00411 Ribosomal protein S11 E3397_RS02155 PF00163 Ribosomal protein S4/S9 N-terminal domain E3397_RS02155 PF01479 S4 domain E3397_RS02160 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E3397_RS02160 PF01000 RNA polymerase Rpb3/RpoA insert domain E3397_RS02160 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E3397_RS02165 PF01196 Ribosomal protein L17 E3397_RS02170 PF09350 Domain of unknown function (DUF1992) E3397_RS02175 PF13411 MerR HTH family regulatory protein E3397_RS02180 PF03889 Alternative ribosome-rescue factor A E3397_RS02185 PF01741 Large-conductance mechanosensitive channel, MscL E3397_RS02190 PF02080 TrkA-C domain E3397_RS02190 PF02254 TrkA-N domain E3397_RS02195 PF01029 NusB family E3397_RS02195 PF01189 16S rRNA methyltransferase RsmB/F E3397_RS02200 PF02911 Formyl transferase, C-terminal domain E3397_RS02200 PF00551 Formyl transferase E3397_RS02205 PF01327 Polypeptide deformylase E3397_RS02210 PF17782 DprA winged helix domain E3397_RS02210 PF02481 DNA recombination-mediator protein A E3397_RS02215 PF04361 Protein of unknown function (DUF494) E3397_RS02220 PF01396 Topoisomerase DNA binding C4 zinc finger E3397_RS02225 PF01300 Telomere recombination E3397_RS02230 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E3397_RS02230 PF01488 Shikimate / quinate 5-dehydrogenase E3397_RS02230 PF08501 Shikimate dehydrogenase substrate binding domain E3397_RS02235 PF07369 Protein of unknown function (DUF1488) E3397_RS02240 PF00132 Bacterial transferase hexapeptide (six repeats) E3397_RS02280 PF00873 AcrB/AcrD/AcrF family E3397_RS02285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3397_RS02285 PF00529 HlyD membrane-fusion protein of T1SS E3397_RS02290 PF00440 Bacterial regulatory proteins, tetR family E3397_RS02290 PF08361 MAATS-type transcriptional repressor, C-terminal region E3397_RS02295 PF00990 Diguanylate cyclase, GGDEF domain E3397_RS02295 PF00563 EAL domain E3397_RS02295 PF03707 Bacterial signalling protein N terminal repeat E3397_RS02300 PF10831 Protein of unknown function (DUF2556) E3397_RS02305 PF01555 DNA methylase E3397_RS02310 PF02954 Bacterial regulatory protein, Fis family E3397_RS02315 PF01207 Dihydrouridine synthase (Dus) E3397_RS02330 PF00474 Sodium:solute symporter family E3397_RS02335 PF06196 Protein of unknown function (DUF997) E3397_RS02340 PF02785 Biotin carboxylase C-terminal domain E3397_RS02340 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3397_RS02340 PF00289 Biotin carboxylase, N-terminal domain E3397_RS02345 PF00364 Biotin-requiring enzyme E3397_RS02350 PF01794 Ferric reductase like transmembrane component E3397_RS02355 PF00174 Oxidoreductase molybdopterin binding domain E3397_RS02360 PF00107 Zinc-binding dehydrogenase E3397_RS02360 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS02365 PF00563 EAL domain E3397_RS02365 PF17157 Gammaproteobacterial periplasmic sensor domain E3397_RS02365 PF00990 Diguanylate cyclase, GGDEF domain E3397_RS02375 PF04085 rod shape-determining protein MreC E3397_RS02380 PF04093 rod shape-determining protein MreD E3397_RS02385 PF02545 Maf-like protein E3397_RS02390 PF00575 S1 RNA binding domain E3397_RS02390 PF10150 Ribonuclease E/G family E3397_RS02395 PF13502 AsmA-like C-terminal region E3397_RS02395 PF13116 Protein of unknown function E3397_RS02400 PF01523 Putative modulator of DNA gyrase E3397_RS02405 PF03466 LysR substrate binding domain E3397_RS02405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS02410 PF07869 Protein of unknown function (DUF1656) E3397_RS02415 PF13533 Biotin-lipoyl like E3397_RS02420 PF04632 Fusaric acid resistance protein family E3397_RS02425 PF01337 Barstar (barnase inhibitor) E3397_RS02430 PF07338 Protein of unknown function (DUF1471) E3397_RS02435 PF07338 Protein of unknown function (DUF1471) E3397_RS02440 PF01316 Arginine repressor, DNA binding domain E3397_RS02440 PF02863 Arginine repressor, C-terminal domain E3397_RS02445 PF00056 lactate/malate dehydrogenase, NAD binding domain E3397_RS02445 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain E3397_RS02450 PF07702 UTRA domain E3397_RS02450 PF00392 Bacterial regulatory proteins, gntR family E3397_RS02460 PF00939 Sodium:sulfate symporter transmembrane region E3397_RS02465 PF05681 Fumarate hydratase (Fumerase) E3397_RS02470 PF05683 Fumarase C-terminus E3397_RS02475 PF04277 Oxaloacetate decarboxylase, gamma chain E3397_RS02480 PF02436 Conserved carboxylase domain E3397_RS02480 PF00682 HMGL-like E3397_RS02480 PF00364 Biotin-requiring enzyme E3397_RS02485 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit E3397_RS02490 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase E3397_RS02495 PF13180 PDZ domain E3397_RS02500 PF13180 PDZ domain E3397_RS02500 PF00595 PDZ domain E3397_RS02505 PF06295 Protein of unknown function (DUF1043) E3397_RS02510 PF03969 AFG1-like ATPase E3397_RS02515 PF00572 Ribosomal protein L13 E3397_RS02520 PF00380 Ribosomal protein S9/S16 E3397_RS02535 PF02798 Glutathione S-transferase, N-terminal domain E3397_RS02535 PF00043 Glutathione S-transferase, C-terminal domain E3397_RS02540 PF04386 Stringent starvation protein B E3397_RS02545 PF00392 Bacterial regulatory proteins, gntR family E3397_RS02545 PF07729 FCD domain E3397_RS02550 PF00701 Dihydrodipicolinate synthetase family E3397_RS02555 PF07690 Major Facilitator Superfamily E3397_RS02560 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase E3397_RS02565 PF00480 ROK family E3397_RS02570 PF04074 YhcH/YjgK/YiaL E3397_RS02575 PF07969 Amidohydrolase family E3397_RS02580 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin E3397_RS02585 PF17761 DUF1016 N-terminal domain E3397_RS02585 PF06250 YhcG PDDEXK nuclease domain E3397_RS02590 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E3397_RS02590 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS02595 PF00310 Glutamine amidotransferases class-II E3397_RS02595 PF01645 Conserved region in glutamate synthase E3397_RS02595 PF04898 Glutamate synthase central domain E3397_RS02595 PF01493 GXGXG motif E3397_RS02600 PF04055 Radical SAM superfamily E3397_RS02600 PF16199 Radical_SAM C-terminal domain E3397_RS02605 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS02605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS02605 PF18415 Histidine kinase receptor ArcB trans-membrane domain E3397_RS02605 PF00989 PAS fold E3397_RS02605 PF00072 Response regulator receiver domain E3397_RS02605 PF01627 Hpt domain E3397_RS02615 PF00912 Transglycosylase E3397_RS02620 PF10707 PhoP regulatory network protein YrbL E3397_RS02625 PF00381 PTS HPr component phosphorylation site E3397_RS02630 PF03668 P-loop ATPase protein family E3397_RS02635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3397_RS02640 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E3397_RS02645 PF00309 Sigma-54 factor, Activator interacting domain (AID) E3397_RS02645 PF04963 Sigma-54 factor, core binding domain E3397_RS02645 PF04552 Sigma-54, DNA binding domain E3397_RS02650 PF12399 Branched-chain amino acid ATP-binding cassette transporter E3397_RS02650 PF00005 ABC transporter E3397_RS02655 PF03968 OstA-like protein E3397_RS02660 PF06835 Lipopolysaccharide-assembly, LptC-related E3397_RS02670 PF01380 SIS domain E3397_RS02670 PF00571 CBS domain E3397_RS02675 PF01699 Sodium/calcium exchanger protein E3397_RS02680 PF00005 ABC transporter E3397_RS02685 PF02405 Permease MlaE E3397_RS02690 PF02470 MlaD protein E3397_RS02695 PF05494 MlaC protein E3397_RS02700 PF13466 STAS domain E3397_RS02705 PF01722 BolA-like protein E3397_RS02710 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3397_RS02715 PF13693 Winged helix-turn-helix DNA-binding E3397_RS02720 PF00348 Polyprenyl synthetase E3397_RS02725 PF00829 Ribosomal prokaryotic L21 protein E3397_RS02730 PF01016 Ribosomal L27 protein E3397_RS02735 PF00892 EamA-like transporter family E3397_RS02740 PF01018 GTP1/OBG E3397_RS02740 PF01926 50S ribosome-binding GTPase E3397_RS02745 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family E3397_RS02750 PF03449 Transcription elongation factor, N-terminal E3397_RS02750 PF01272 Transcription elongation factor, GreA/GreB, C-term E3397_RS02755 PF01985 CRS1 / YhbY (CRM) domain E3397_RS02760 PF01728 FtsJ-like methyltransferase E3397_RS02765 PF06480 FtsH Extracellular E3397_RS02765 PF17862 AAA+ lid domain E3397_RS02765 PF00004 ATPase family associated with various cellular activities (AAA) E3397_RS02765 PF01434 Peptidase family M41 E3397_RS02770 PF00809 Pterin binding enzyme E3397_RS02775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3397_RS02775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3397_RS02775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3397_RS02775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3397_RS02780 PF03840 Preprotein translocase SecG subunit E3397_RS02795 PF00764 Arginosuccinate synthase E3397_RS02805 PF17384 RimP C-terminal SH3 domain E3397_RS02805 PF02576 RimP N-terminal domain E3397_RS02810 PF08529 NusA N-terminal domain E3397_RS02810 PF13184 NusA-like KH domain E3397_RS02815 PF04760 Translation initiation factor IF-2, N-terminal region E3397_RS02815 PF08364 Bacterial translation initiation factor IF-2 associated region E3397_RS02815 PF11987 Translation-initiation factor 2 E3397_RS02815 PF00009 Elongation factor Tu GTP binding domain E3397_RS02820 PF02033 Ribosome-binding factor A E3397_RS02825 PF16198 tRNA pseudouridylate synthase B C-terminal domain E3397_RS02825 PF01509 TruB family pseudouridylate synthase (N terminal domain) E3397_RS02825 PF09157 Pseudouridine synthase II TruB, C-terminal E3397_RS02830 PF00312 Ribosomal protein S15 E3397_RS02835 PF00013 KH domain E3397_RS02835 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E3397_RS02835 PF00575 S1 RNA binding domain E3397_RS02835 PF03725 3' exoribonuclease family, domain 2 E3397_RS02835 PF01138 3' exoribonuclease family, domain 1 E3397_RS02840 PF07719 Tetratricopeptide repeat E3397_RS02840 PF13181 Tetratricopeptide repeat E3397_RS02850 PF00271 Helicase conserved C-terminal domain E3397_RS02850 PF12343 Cold shock protein DEAD box A E3397_RS02850 PF00270 DEAD/DEAH box helicase E3397_RS02850 PF03880 DbpA RNA binding domain E3397_RS02855 PF03222 Tryptophan/tyrosine permease family E3397_RS02865 PF03734 L,D-transpeptidase catalytic domain E3397_RS02870 PF00296 Luciferase-like monooxygenase E3397_RS02875 PF01136 Peptidase family U32 E3397_RS02880 PF01136 Peptidase family U32 E3397_RS02885 PF02036 SCP-2 sterol transfer family E3397_RS02890 PF13508 Acetyltransferase (GNAT) domain E3397_RS02895 PF01541 GIY-YIG catalytic domain E3397_RS02905 PF01965 DJ-1/PfpI family E3397_RS02910 PF13460 NAD(P)H-binding E3397_RS02915 PF04972 BON domain E3397_RS02920 PF13580 SIS domain E3397_RS02925 PF02021 Uncharacterised protein family UPF0102 E3397_RS02930 PF04348 LppC putative lipoprotein E3397_RS02935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3397_RS02940 PF08220 DeoR-like helix-turn-helix domain E3397_RS02945 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS02945 PF00107 Zinc-binding dehydrogenase E3397_RS02950 PF03611 PTS system sugar-specific permease component E3397_RS02955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3397_RS02960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3397_RS02965 PF08013 Tagatose 6 phosphate kinase E3397_RS02970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3397_RS02970 PF00381 PTS HPr component phosphorylation site E3397_RS02975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3397_RS02975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3397_RS02980 PF00294 pfkB family carbohydrate kinase E3397_RS02985 PF01116 Fructose-bisphosphate aldolase class-II E3397_RS02990 PF08220 DeoR-like helix-turn-helix domain E3397_RS02990 PF00455 DeoR C terminal sensor domain E3397_RS02995 PF00294 pfkB family carbohydrate kinase E3397_RS03000 PF08666 SAF domain E3397_RS03000 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus E3397_RS03005 PF03328 HpcH/HpaI aldolase/citrate lyase family E3397_RS03010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3397_RS03010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3397_RS03015 PF02595 Glycerate kinase family E3397_RS03025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS03025 PF03466 LysR substrate binding domain E3397_RS03030 PF00291 Pyridoxal-phosphate dependent enzyme E3397_RS03035 PF03222 Tryptophan/tyrosine permease family E3397_RS03040 PF00871 Acetokinase family E3397_RS03045 PF02901 Pyruvate formate lyase-like E3397_RS03045 PF01228 Glycine radical E3397_RS03050 PF03315 Serine dehydratase beta chain E3397_RS03050 PF03313 Serine dehydratase alpha chain E3397_RS03060 PF03313 Serine dehydratase alpha chain E3397_RS03070 PF02678 Pirin E3397_RS03070 PF17954 Quercetinase C-terminal cupin domain E3397_RS03075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS03075 PF03466 LysR substrate binding domain E3397_RS03080 PF05656 Protein of unknown function (DUF805) E3397_RS03085 PF13409 Glutathione S-transferase, N-terminal domain E3397_RS03090 PF07681 DoxX E3397_RS03095 PF13997 YqjK-like protein E3397_RS03100 PF07332 Putative Actinobacterial Holin-X, holin superfamily III E3397_RS03105 PF05957 Bacterial protein of unknown function (DUF883) E3397_RS03110 PF06476 Protein of unknown function (DUF1090) E3397_RS03115 PF13721 SecD export protein N-terminal TM region E3397_RS03120 PF09335 SNARE associated Golgi protein E3397_RS03125 PF00375 Sodium:dicarboxylate symporter family E3397_RS03130 PF03741 Integral membrane protein TerC family E3397_RS03135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3397_RS03140 PF02698 DUF218 domain E3397_RS03145 PF01863 Protein of unknown function DUF45 E3397_RS03155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3397_RS03155 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS03160 PF00202 Aminotransferase class-III E3397_RS03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3397_RS03165 PF08447 PAS fold E3397_RS03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3397_RS03165 PF08447 PAS fold E3397_RS03170 PF00672 HAMP domain E3397_RS03170 PF02203 Tar ligand binding domain homologue E3397_RS03170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3397_RS03175 PF03551 Transcriptional regulator PadR-like family E3397_RS03180 PF08021 Siderophore-interacting FAD-binding domain E3397_RS03180 PF04954 Siderophore-interacting protein E3397_RS03190 PF03167 Uracil DNA glycosylase superfamily E3397_RS03195 PF00140 Sigma-70 factor, region 1.2 E3397_RS03195 PF04546 Sigma-70, non-essential region E3397_RS03195 PF04545 Sigma-70, region 4 E3397_RS03195 PF04539 Sigma-70 region 3 E3397_RS03195 PF04542 Sigma-70 region 2 E3397_RS03195 PF03979 Sigma-70 factor, region 1.1 E3397_RS03200 PF10410 DnaB-helicase binding domain of primase E3397_RS03200 PF08278 DNA primase DnaG DnaB-binding E3397_RS03200 PF08275 DNA primase catalytic core, N-terminal domain E3397_RS03200 PF01807 CHC2 zinc finger E3397_RS03205 PF01165 Ribosomal protein S21 E3397_RS03210 PF00814 Glycoprotease family E3397_RS03225 PF02660 Glycerol-3-phosphate acyltransferase E3397_RS03230 PF02152 Dihydroneopterin aldolase E3397_RS03235 PF02673 Bacitracin resistance protein BacA E3397_RS03240 PF01966 HD domain E3397_RS03240 PF01743 Poly A polymerase head domain E3397_RS03240 PF12627 Probable RNA and SrmB- binding site of polymerase A E3397_RS03245 PF08239 Bacterial SH3 domain E3397_RS03250 PF01928 CYTH domain E3397_RS03255 PF08335 GlnD PII-uridylyltransferase E3397_RS03255 PF03710 Glutamate-ammonia ligase adenylyltransferase E3397_RS03260 PF01467 Cytidylyltransferase-like E3397_RS03260 PF00294 pfkB family carbohydrate kinase E3397_RS03270 PF01145 SPFH domain / Band 7 family E3397_RS03270 PF15975 Flotillin E3397_RS03275 PF07290 Protein of unknown function (DUF1449) E3397_RS03280 PF08971 Glycogen synthesis protein E3397_RS03285 PF04380 Membrane fusogenic activity E3397_RS03290 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E3397_RS03295 PF02600 Disulfide bond formation protein DsbB E3397_RS03300 PF01323 DSBA-like thioredoxin domain E3397_RS03305 PF17425 Arylsulfotransferase Ig-like domain E3397_RS03305 PF05935 Arylsulfotransferase (ASST) E3397_RS03310 PF02535 ZIP Zinc transporter E3397_RS03315 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase E3397_RS03320 PF03738 Glutathionylspermidine synthase preATP-grasp E3397_RS03325 PF06693 Protein of unknown function (DUF1190) E3397_RS03330 PF02321 Outer membrane efflux protein E3397_RS03335 PF00293 NUDIX domain E3397_RS03340 PF06853 Protein of unknown function (DUF1249) E3397_RS03345 PF00149 Calcineurin-like phosphoesterase E3397_RS03350 PF05728 Uncharacterised protein family (UPF0227) E3397_RS03355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS03355 PF00204 DNA gyrase B E3397_RS03355 PF01751 Toprim domain E3397_RS03355 PF00986 DNA gyrase B subunit, carboxyl terminus E3397_RS03360 PF03992 Antibiotic biosynthesis monooxygenase E3397_RS03365 PF02525 Flavodoxin-like fold E3397_RS03370 PF08521 Two-component sensor kinase N-terminal E3397_RS03370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS03370 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS03375 PF00072 Response regulator receiver domain E3397_RS03375 PF00486 Transcriptional regulatory protein, C terminal E3397_RS03380 PF04076 Bacterial OB fold (BOF) protein E3397_RS03385 PF06445 GyrI-like small molecule binding domain E3397_RS03390 PF03989 DNA gyrase C-terminal domain, beta-propeller E3397_RS03390 PF00521 DNA gyrase/topoisomerase IV, subunit A E3397_RS03395 PF01553 Acyltransferase E3397_RS03400 PF07731 Multicopper oxidase E3397_RS03400 PF07732 Multicopper oxidase E3397_RS03400 PF00394 Multicopper oxidase E3397_RS03405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component E3397_RS03415 PF03480 Bacterial extracellular solute-binding protein, family 7 E3397_RS03420 PF08497 Radical SAM N-terminal E3397_RS03420 PF04055 Radical SAM superfamily E3397_RS03420 PF11842 Domain of unknown function (DUF3362) E3397_RS03435 PF00939 Sodium:sulfate symporter transmembrane region E3397_RS03440 PF00248 Aldo/keto reductase family E3397_RS03445 PF00465 Iron-containing alcohol dehydrogenase E3397_RS03450 PF06719 AraC-type transcriptional regulator N-terminus E3397_RS03450 PF12833 Helix-turn-helix domain E3397_RS03455 PF09335 SNARE associated Golgi protein E3397_RS03460 PF01053 Cys/Met metabolism PLP-dependent enzyme E3397_RS03465 PF01618 MotA/TolQ/ExbB proton channel family E3397_RS03470 PF02472 Biopolymer transport protein ExbD/TolR E3397_RS03495 PF03350 Uncharacterized protein family, UPF0114 E3397_RS03500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3397_RS03500 PF02203 Tar ligand binding domain homologue E3397_RS03500 PF00672 HAMP domain E3397_RS03505 PF11115 Protein of unknown function (DUF2623) E3397_RS03510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3397_RS03510 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal E3397_RS03515 PF13247 4Fe-4S dicluster domain E3397_RS03520 PF03916 Polysulphide reductase, NrfD E3397_RS03525 PF00374 Nickel-dependent hydrogenase E3397_RS03530 PF01750 Hydrogenase maturation protease E3397_RS03535 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE E3397_RS03540 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA E3397_RS03545 PF01455 HupF/HypC family E3397_RS03550 PF01497 Periplasmic binding protein E3397_RS03560 PF02798 Glutathione S-transferase, N-terminal domain E3397_RS03565 PF03738 Glutathionylspermidine synthase preATP-grasp E3397_RS03565 PF05257 CHAP domain E3397_RS03575 PF02614 Glucuronate isomerase E3397_RS03580 PF08125 Mannitol dehydrogenase C-terminal domain E3397_RS03580 PF01232 Mannitol dehydrogenase Rossmann domain E3397_RS03585 PF03786 D-mannonate dehydratase (UxuA) E3397_RS03590 PF07690 Major Facilitator Superfamily E3397_RS03600 PF01522 Polysaccharide deacetylase E3397_RS03610 PF04965 Gene 25-like lysozyme E3397_RS03615 PF00171 Aldehyde dehydrogenase family E3397_RS03620 PF01266 FAD dependent oxidoreductase E3397_RS03630 PF13520 Amino acid permease E3397_RS03640 PF00196 Bacterial regulatory proteins, luxR family E3397_RS03645 PF04055 Radical SAM superfamily E3397_RS03650 PF00884 Sulfatase E3397_RS03655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS03655 PF03466 LysR substrate binding domain E3397_RS03660 PF03328 HpcH/HpaI aldolase/citrate lyase family E3397_RS03665 PF01575 MaoC like domain E3397_RS03670 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain E3397_RS03670 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain E3397_RS03675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3397_RS03685 PF04474 Protein of unknown function (DUF554) E3397_RS03690 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain E3397_RS03690 PF01276 Orn/Lys/Arg decarboxylase, major domain E3397_RS03690 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain E3397_RS03695 PF03825 Nucleoside H+ symporter E3397_RS03700 PF01464 Transglycosylase SLT domain E3397_RS03700 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain E3397_RS03705 PF04362 Bacterial Fe(2+) trafficking E3397_RS03710 PF00730 HhH-GPD superfamily base excision DNA repair protein E3397_RS03710 PF00633 Helix-hairpin-helix motif E3397_RS03710 PF14815 NUDIX domain E3397_RS03715 PF02390 Putative methyltransferase E3397_RS03720 PF04320 Protein with unknown function (DUF469) E3397_RS03725 PF11101 Protein of unknown function (DUF2884) E3397_RS03730 PF00710 Asparaginase, N-terminal E3397_RS03730 PF17763 Glutaminase/Asparaginase C-terminal domain E3397_RS03735 PF06717 Protein of unknown function (DUF1202) E3397_RS03740 PF04055 Radical SAM superfamily E3397_RS03740 PF06969 HemN C-terminal domain E3397_RS03745 PF01725 Ham1 family E3397_RS03750 PF02594 Uncharacterised ACR, YggU family COG1872 E3397_RS03755 PF02325 YGGT family E3397_RS03760 PF01168 Alanine racemase, N-terminal domain E3397_RS03765 PF00437 Type II/IV secretion system protein E3397_RS03775 PF03652 Holliday junction resolvase E3397_RS03780 PF02622 Uncharacterized ACR, COG1678 E3397_RS03785 PF02951 Prokaryotic glutathione synthetase, N-terminal domain E3397_RS03785 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain E3397_RS03790 PF04452 RNA methyltransferase E3397_RS03795 PF04231 Endonuclease I E3397_RS03800 PF17283 SprT-like zinc ribbon domain E3397_RS03800 PF10263 SprT-like family E3397_RS03805 PF00083 Sugar (and other) transporter E3397_RS03810 PF00438 S-adenosylmethionine synthetase, N-terminal domain E3397_RS03810 PF02772 S-adenosylmethionine synthetase, central domain E3397_RS03810 PF02773 S-adenosylmethionine synthetase, C-terminal domain E3397_RS03825 PF17944 Arginine decarboxylase C-terminal helical extension E3397_RS03825 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3397_RS03825 PF17810 Arginine decarboxylase helical bundle domain E3397_RS03835 PF07729 FCD domain E3397_RS03835 PF00392 Bacterial regulatory proteins, gntR family E3397_RS03845 PF08125 Mannitol dehydrogenase C-terminal domain E3397_RS03845 PF01232 Mannitol dehydrogenase Rossmann domain E3397_RS03850 PF00107 Zinc-binding dehydrogenase E3397_RS03850 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS03855 PF02615 Malate/L-lactate dehydrogenase E3397_RS03860 PF04074 YhcH/YjgK/YiaL E3397_RS03865 PF12697 Alpha/beta hydrolase family E3397_RS03870 PF00491 Arginase family E3397_RS03875 PF01435 Peptidase family M48 E3397_RS03880 PF00456 Transketolase, thiamine diphosphate binding domain E3397_RS03880 PF02780 Transketolase, C-terminal domain E3397_RS03880 PF02779 Transketolase, pyrimidine binding domain E3397_RS03885 PF00005 ABC transporter E3397_RS03890 PF00005 ABC transporter E3397_RS03910 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3397_RS03910 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3397_RS03915 PF00162 Phosphoglycerate kinase E3397_RS03920 PF01116 Fructose-bisphosphate aldolase class-II E3397_RS03925 PF05552 Conserved TM helix E3397_RS03925 PF00924 Mechanosensitive ion channel E3397_RS03930 PF01810 LysE type translocator E3397_RS03935 PF04402 Protein of unknown function (DUF541) E3397_RS03940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS03940 PF03466 LysR substrate binding domain E3397_RS03945 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E3397_RS03950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3397_RS03950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3397_RS03950 PF01842 ACT domain E3397_RS03955 PF01812 5-formyltetrahydrofolate cyclo-ligase family E3397_RS03965 PF05164 Cell division protein ZapA E3397_RS03970 PF03695 Uncharacterised protein family (UPF0149) E3397_RS03975 PF05195 Aminopeptidase P, N-terminal domain E3397_RS03975 PF00557 Metallopeptidase family M24 E3397_RS03980 PF01494 FAD binding domain E3397_RS03985 PF01494 FAD binding domain E3397_RS03990 PF01571 Aminomethyltransferase folate-binding domain E3397_RS03990 PF08669 Glycine cleavage T-protein C-terminal barrel domain E3397_RS03995 PF01597 Glycine cleavage H-protein E3397_RS04000 PF02347 Glycine cleavage system P-protein E3397_RS04015 PF00232 Glycosyl hydrolase family 1 E3397_RS04020 PF04266 ASCH domain E3397_RS04025 PF03006 Haemolysin-III related E3397_RS04030 PF01571 Aminomethyltransferase folate-binding domain E3397_RS04035 PF03937 Flavinator of succinate dehydrogenase E3397_RS04040 PF07254 Membrane-bound toxin component of toxin-antitoxin system E3397_RS04045 PF00258 Flavodoxin E3397_RS04050 PF00589 Phage integrase family E3397_RS04050 PF02899 Phage integrase, N-terminal SAM-like domain E3397_RS04055 PF13098 Thioredoxin-like domain E3397_RS04055 PF10411 Disulfide bond isomerase protein N-terminus E3397_RS04060 PF17768 RecJ OB domain E3397_RS04060 PF01368 DHH family E3397_RS04060 PF02272 DHHA1 domain E3397_RS04070 PF00152 tRNA synthetases class II (D, K and N) E3397_RS04070 PF01336 OB-fold nucleic acid binding domain E3397_RS04075 PF00293 NUDIX domain E3397_RS04085 PF01476 LysM domain E3397_RS04085 PF01551 Peptidase family M23 E3397_RS04095 PF13356 Arm DNA-binding domain E3397_RS04095 PF14659 Phage integrase, N-terminal SAM-like domain E3397_RS04095 PF00589 Phage integrase family E3397_RS04110 PF01022 Bacterial regulatory protein, arsR family E3397_RS04115 PF06953 Arsenical resistance operon trans-acting repressor ArsD E3397_RS04120 PF02374 Anion-transporting ATPase E3397_RS04125 PF02040 Arsenical pump membrane protein E3397_RS04130 PF03960 ArsC family E3397_RS04145 PF02374 Anion-transporting ATPase E3397_RS04150 PF06953 Arsenical resistance operon trans-acting repressor ArsD E3397_RS04160 PF03358 NADPH-dependent FMN reductase E3397_RS04195 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS04195 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS04200 PF00577 Outer membrane usher protein E3397_RS04200 PF13954 PapC N-terminal domain E3397_RS04200 PF13953 PapC C-terminal domain E3397_RS04210 PF02308 MgtC family E3397_RS04255 PF00300 Histidine phosphatase superfamily (branch 1) E3397_RS04260 PF00753 Metallo-beta-lactamase superfamily E3397_RS04260 PF14863 Alkyl sulfatase dimerisation E3397_RS04260 PF14864 Alkyl sulfatase C-terminal E3397_RS04265 PF12794 Mechanosensitive ion channel inner membrane domain 1 E3397_RS04265 PF12795 Mechanosensitive ion channel porin domain E3397_RS04265 PF00924 Mechanosensitive ion channel E3397_RS04270 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) E3397_RS04275 PF01926 50S ribosome-binding GTPase E3397_RS04280 PF08220 DeoR-like helix-turn-helix domain E3397_RS04280 PF13280 WYL domain E3397_RS04300 PF06006 Bacterial protein of unknown function (DUF905) E3397_RS04305 PF06067 Domain of unknown function (DUF932) E3397_RS04310 PF03230 Antirestriction protein E3397_RS04315 PF04002 RadC-like JAB domain E3397_RS04320 PF06174 Protein of unknown function (DUF987) E3397_RS04325 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A E3397_RS04330 PF06755 CbtA_toxin of type IV toxin-antitoxin system E3397_RS04350 PF13505 Outer membrane protein beta-barrel domain E3397_RS04360 PF00419 Fimbrial protein E3397_RS04365 PF13953 PapC C-terminal domain E3397_RS04365 PF00577 Outer membrane usher protein E3397_RS04365 PF13954 PapC N-terminal domain E3397_RS04370 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS04370 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS04390 PF03824 High-affinity nickel-transport protein E3397_RS04395 PF02583 Metal-sensitive transcriptional repressor E3397_RS04400 PF03222 Tryptophan/tyrosine permease family E3397_RS04410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS04410 PF03466 LysR substrate binding domain E3397_RS04415 PF00108 Thiolase, N-terminal domain E3397_RS04415 PF02803 Thiolase, C-terminal domain E3397_RS04420 PF04962 KduI/IolB family E3397_RS04430 PF00083 Sugar (and other) transporter E3397_RS04435 PF01177 Asp/Glu/Hydantoin racemase E3397_RS04440 PF03466 LysR substrate binding domain E3397_RS04440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS04445 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E3397_RS04445 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3397_RS04450 PF00356 Bacterial regulatory proteins, lacI family E3397_RS04455 PF00356 Bacterial regulatory proteins, lacI family E3397_RS04460 PF01553 Acyltransferase E3397_RS04460 PF00501 AMP-binding enzyme E3397_RS04465 PF07690 Major Facilitator Superfamily E3397_RS04470 PF00248 Aldo/keto reductase family E3397_RS04475 PF06004 Bacterial protein of unknown function (DUF903) E3397_RS04480 PF03741 Integral membrane protein TerC family E3397_RS04485 PF02976 DNA mismatch repair enzyme MutH E3397_RS04490 PF00293 NUDIX domain E3397_RS04495 PF01590 GAF domain E3397_RS04495 PF05524 PEP-utilising enzyme, N-terminal E3397_RS04495 PF02896 PEP-utilising enzyme, TIM barrel domain E3397_RS04495 PF00391 PEP-utilising enzyme, mobile domain E3397_RS04505 PF01790 Prolipoprotein diacylglyceryl transferase E3397_RS04510 PF00303 Thymidylate synthase E3397_RS04515 PF07963 Prokaryotic N-terminal methylation motif E3397_RS04520 PF07963 Prokaryotic N-terminal methylation motif E3397_RS04525 PF10713 Protein of unknown function (DUF2509) E3397_RS04530 PF07963 Prokaryotic N-terminal methylation motif E3397_RS04530 PF12528 Type II secretion prepilin peptidase dependent protein C E3397_RS04535 PF17946 RecC C-terminal domain E3397_RS04540 PF05193 Peptidase M16 inactive domain E3397_RS04540 PF00675 Insulinase (Peptidase family M16) E3397_RS04540 PF16187 Middle or third domain of peptidase_M16 E3397_RS04545 PF13361 UvrD-like helicase C-terminal domain E3397_RS04545 PF12705 PD-(D/E)XK nuclease superfamily E3397_RS04545 PF00580 UvrD/REP helicase N-terminal domain E3397_RS04550 PF13538 UvrD-like helicase C-terminal domain E3397_RS04555 PF00696 Amino acid kinase family E3397_RS04555 PF00583 Acetyltransferase (GNAT) family E3397_RS04560 PF01520 N-acetylmuramoyl-L-alanine amidase E3397_RS04560 PF11741 AMIN domain E3397_RS04575 PF06725 3D domain E3397_RS04575 PF03562 MltA specific insert domain E3397_RS04580 PF00899 ThiF family E3397_RS04585 PF00892 EamA-like transporter family E3397_RS04590 PF02657 Fe-S metabolism associated domain E3397_RS04595 PF00266 Aminotransferase class-V E3397_RS04600 PF06004 Bacterial protein of unknown function (DUF903) E3397_RS04605 PF03466 LysR substrate binding domain E3397_RS04605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS04610 PF04241 Protein of unknown function (DUF423) E3397_RS04615 PF18125 RlmM ferredoxin-like domain E3397_RS04615 PF01728 FtsJ-like methyltransferase E3397_RS04620 PF08220 DeoR-like helix-turn-helix domain E3397_RS04620 PF00455 DeoR C terminal sensor domain E3397_RS04625 PF05025 RbsD / FucU transport protein family E3397_RS04630 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3397_RS04630 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3397_RS04635 PF02952 L-fucose isomerase, C-terminal domain E3397_RS04635 PF07881 L-fucose isomerase, first N-terminal domain E3397_RS04635 PF07882 L-fucose isomerase, second N-terminal domain E3397_RS04640 PF07690 Major Facilitator Superfamily E3397_RS04645 PF00596 Class II Aldolase and Adducin N-terminal domain E3397_RS04650 PF00465 Iron-containing alcohol dehydrogenase E3397_RS04655 PF01367 5'-3' exonuclease, C-terminal SAM fold E3397_RS04655 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E3397_RS04660 PF03315 Serine dehydratase beta chain E3397_RS04660 PF03313 Serine dehydratase alpha chain E3397_RS04670 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases E3397_RS04670 PF03641 Possible lysine decarboxylase E3397_RS04670 PF11892 Domain of unknown function (DUF3412) E3397_RS04675 PF14489 QueF-like protein E3397_RS04675 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term E3397_RS04680 PF07348 Syd protein (SUKH-2) E3397_RS04690 PF04287 tRNA pseudouridine synthase C E3397_RS04695 PF00849 RNA pseudouridylate synthase E3397_RS04700 PF00258 Flavodoxin E3397_RS04710 PF07690 Major Facilitator Superfamily E3397_RS04715 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3397_RS04715 PF13378 Enolase C-terminal domain-like E3397_RS04720 PF13378 Enolase C-terminal domain-like E3397_RS04725 PF02595 Glycerate kinase family E3397_RS04730 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E3397_RS04730 PF00672 HAMP domain E3397_RS04730 PF00072 Response regulator receiver domain E3397_RS04730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS04730 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS04730 PF01627 Hpt domain E3397_RS04735 PF05958 tRNA (Uracil-5-)-methyltransferase E3397_RS04735 PF01938 TRAM domain E3397_RS04740 PF13291 ACT domain E3397_RS04740 PF02824 TGS domain E3397_RS04740 PF04607 Region found in RelA / SpoT proteins E3397_RS04745 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH E3397_RS04765 PF00419 Fimbrial protein E3397_RS04775 PF00419 Fimbrial protein E3397_RS04780 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS04780 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS04785 PF00577 Outer membrane usher protein E3397_RS04785 PF13953 PapC C-terminal domain E3397_RS04785 PF13954 PapC N-terminal domain E3397_RS04790 PF00419 Fimbrial protein E3397_RS04795 PF03819 MazG nucleotide pyrophosphohydrolase domain E3397_RS04800 PF06418 CTP synthase N-terminus E3397_RS04800 PF00117 Glutamine amidotransferase class-I E3397_RS04805 PF03952 Enolase, N-terminal domain E3397_RS04805 PF00113 Enolase, C-terminal TIM barrel domain E3397_RS04810 PF04055 Radical SAM superfamily E3397_RS04815 PF03099 Biotin/lipoate A/B protein ligase family E3397_RS04815 PF12706 Beta-lactamase superfamily domain E3397_RS04820 PF01242 6-pyruvoyl tetrahydropterin synthase E3397_RS04825 PF00258 Flavodoxin E3397_RS04825 PF00175 Oxidoreductase NAD-binding domain E3397_RS04825 PF00667 FAD binding domain E3397_RS04830 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E3397_RS04830 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E3397_RS04835 PF01507 Phosphoadenosine phosphosulfate reductase family E3397_RS04840 PF11047 Salmonella outer protein D E3397_RS04845 PF00270 DEAD/DEAH box helicase E3397_RS04845 PF00271 Helicase conserved C-terminal domain E3397_RS04845 PF18019 HD domain E3397_RS04850 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) E3397_RS04860 PF09344 CT1975-like protein E3397_RS04865 PF09704 CRISPR-associated protein (Cas_Cas5) E3397_RS04875 PF01867 CRISPR associated protein Cas1 E3397_RS04880 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) E3397_RS04885 PF04389 Peptidase family M28 E3397_RS04890 PF01507 Phosphoadenosine phosphosulfate reductase family E3397_RS04895 PF00009 Elongation factor Tu GTP binding domain E3397_RS04905 PF12084 Protein of unknown function (DUF3561) E3397_RS04910 PF04977 Septum formation initiator E3397_RS04915 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E3397_RS04920 PF02542 YgbB family E3397_RS04925 PF01142 tRNA pseudouridine synthase D (TruD) E3397_RS04930 PF01975 Survival protein SurE E3397_RS04940 PF01476 LysM domain E3397_RS04940 PF01551 Peptidase family M23 E3397_RS04945 PF04542 Sigma-70 region 2 E3397_RS04945 PF00140 Sigma-70 factor, region 1.2 E3397_RS04945 PF04539 Sigma-70 region 3 E3397_RS04945 PF04545 Sigma-70, region 4 E3397_RS04955 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase E3397_RS04960 PF02441 Flavoprotein E3397_RS04965 PF01047 MarR family E3397_RS04970 PF00455 DeoR C terminal sensor domain E3397_RS04970 PF08220 DeoR-like helix-turn-helix domain E3397_RS04975 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3397_RS04975 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3397_RS04980 PF17042 Nucleotide-binding C-terminal domain E3397_RS04980 PF07005 Sugar-binding N-terminal domain E3397_RS04985 PF00596 Class II Aldolase and Adducin N-terminal domain E3397_RS04990 PF01261 Xylose isomerase-like TIM barrel E3397_RS04995 PF01370 NAD dependent epimerase/dehydratase family E3397_RS05000 PF02447 GntP family permease E3397_RS05005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS05005 PF03466 LysR substrate binding domain E3397_RS05010 PF07690 Major Facilitator Superfamily E3397_RS05020 PF01624 MutS domain I E3397_RS05020 PF05188 MutS domain II E3397_RS05020 PF05192 MutS domain III E3397_RS05020 PF00488 MutS domain V E3397_RS05020 PF05190 MutS family domain IV E3397_RS05045 PF00149 Calcineurin-like phosphoesterase E3397_RS05085 PF04741 InvH outer membrane lipoprotein E3397_RS05090 PF12833 Helix-turn-helix domain E3397_RS05095 PF00263 Bacterial type II and III secretion system protein E3397_RS05095 PF03958 Bacterial type II/III secretion system short domain E3397_RS05100 PF07201 HrpJ-like domain E3397_RS05105 PF00771 FHIPEP family E3397_RS05110 PF03519 Invasion protein B family E3397_RS05115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3397_RS05115 PF18269 T3SS EscN ATPase C-terminal domain E3397_RS05115 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3397_RS05120 PF02090 Salmonella surface presentation of antigen gene type M protein E3397_RS05125 PF02510 Surface presentation of antigens protein E3397_RS05130 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3397_RS05135 PF00813 FliP family E3397_RS05140 PF01313 Bacterial export proteins, family 3 E3397_RS05145 PF01311 Bacterial export proteins, family 1 E3397_RS05150 PF01312 FlhB HrpN YscU SpaS Family E3397_RS05155 PF07720 Tetratricopeptide repeat E3397_RS05160 PF16535 Type III cell invasion protein SipB E3397_RS05160 PF04888 Secretion system effector C (SseC) like family E3397_RS05165 PF09599 Salmonella-Shigella invasin protein C (IpaC_SipC) E3397_RS05170 PF06511 Type III secretion systems tip complex components E3397_RS05175 PF09052 SipA N-terminal domain E3397_RS05180 PF00550 Phosphopantetheine attachment site E3397_RS05190 PF05932 Tir chaperone protein (CesT) family E3397_RS05195 PF09119 SicP binding E3397_RS05195 PF00102 Protein-tyrosine phosphatase E3397_RS05195 PF03545 Yersinia virulence determinant (YopE) E3397_RS05200 PF01464 Transglycosylase SLT domain E3397_RS05205 PF00486 Transcriptional regulatory protein, C terminal E3397_RS05210 PF12833 Helix-turn-helix domain E3397_RS05215 PF09480 Type III secretion system protein PrgH-EprH (PrgH) E3397_RS05220 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF E3397_RS05230 PF01514 Secretory protein of YscJ/FliF family E3397_RS05235 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) E3397_RS05250 PF12833 Helix-turn-helix domain E3397_RS05260 PF03421 YopJ Serine/Threonine acetyltransferase E3397_RS05265 PF00950 ABC 3 transport family E3397_RS05270 PF00950 ABC 3 transport family E3397_RS05275 PF00005 ABC transporter E3397_RS05280 PF01297 Zinc-uptake complex component A periplasmic E3397_RS05285 PF11756 Nitrous oxide-stimulated promoter E3397_RS05290 PF00158 Sigma-54 interaction domain E3397_RS05290 PF01590 GAF domain E3397_RS05290 PF02954 Bacterial regulatory protein, Fis family E3397_RS05295 PF00586 AIR synthase related protein, N-terminal domain E3397_RS05295 PF02769 AIR synthase related protein, C-terminal domain E3397_RS05300 PF01924 Hydrogenase formation hypA family E3397_RS05305 PF01455 HupF/HypC family E3397_RS05310 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3397_RS05315 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA E3397_RS05320 PF11046 Transcriptional repressor of hyc and hyp operons E3397_RS05325 PF13247 4Fe-4S dicluster domain E3397_RS05330 PF00361 Proton-conducting membrane transporter E3397_RS05335 PF00146 NADH dehydrogenase E3397_RS05340 PF00374 Nickel-dependent hydrogenase E3397_RS05340 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit E3397_RS05340 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit E3397_RS05345 PF12838 4Fe-4S dicluster domain E3397_RS05350 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3397_RS05355 PF07450 Formate hydrogenlyase maturation protein HycH E3397_RS05360 PF01750 Hydrogenase maturation protease E3397_RS05370 PF12800 4Fe-4S binding domain E3397_RS05370 PF13247 4Fe-4S dicluster domain E3397_RS05375 PF00708 Acylphosphatase E3397_RS05375 PF17788 HypF Kae1-like domain E3397_RS05375 PF01300 Telomere recombination E3397_RS05375 PF07503 HypF finger E3397_RS05380 PF18113 Rubredoxin binding C-terminal domain E3397_RS05380 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS05385 PF00301 Rubredoxin E3397_RS05385 PF00753 Metallo-beta-lactamase superfamily E3397_RS05385 PF00258 Flavodoxin E3397_RS05390 PF01590 GAF domain E3397_RS05390 PF00158 Sigma-54 interaction domain E3397_RS05400 PF00455 DeoR C terminal sensor domain E3397_RS05400 PF08220 DeoR-like helix-turn-helix domain E3397_RS05405 PF06923 Glucitol operon activator protein (GutM) E3397_RS05410 PF00106 short chain dehydrogenase E3397_RS05415 PF03829 PTS system glucitol/sorbitol-specific IIA component E3397_RS05420 PF03612 Sorbitol phosphotransferase enzyme II N-terminus E3397_RS05420 PF07663 Sorbitol phosphotransferase enzyme II C-terminus E3397_RS05425 PF03608 PTS system enzyme II sorbitol-specific factor E3397_RS05430 PF13406 Transglycosylase SLT domain E3397_RS05440 PF02464 Competence-damaged protein E3397_RS05445 PF00154 recA bacterial DNA recombination protein E3397_RS05450 PF02631 RecX family E3397_RS05460 PF02272 DHHA1 domain E3397_RS05460 PF01411 tRNA synthetases class II (A) E3397_RS05460 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3397_RS05465 PF02599 Global regulator protein family E3397_RS05495 PF13419 Haloacid dehalogenase-like hydrolase E3397_RS05500 PF09335 SNARE associated Golgi protein E3397_RS05505 PF04262 Glutamate-cysteine ligase E3397_RS05510 PF02664 S-Ribosylhomocysteinase (LuxS) E3397_RS05520 PF07690 Major Facilitator Superfamily E3397_RS05525 PF00529 HlyD membrane-fusion protein of T1SS E3397_RS05525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3397_RS05530 PF01047 MarR family E3397_RS05535 PF07690 Major Facilitator Superfamily E3397_RS05540 PF04069 Substrate binding domain of ABC-type glycine betaine transport system E3397_RS05545 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS05550 PF00005 ABC transporter E3397_RS05550 PF00571 CBS domain E3397_RS05555 PF00268 Ribonucleotide reductase, small chain E3397_RS05560 PF02867 Ribonucleotide reductase, barrel domain E3397_RS05560 PF08343 Ribonucleotide reductase N-terminal E3397_RS05560 PF00317 Ribonucleotide reductase, all-alpha domain E3397_RS05565 PF07972 NrdI Flavodoxin like E3397_RS05570 PF00462 Glutaredoxin E3397_RS05580 PF02627 Carboxymuconolactone decarboxylase family E3397_RS05585 PF00155 Aminotransferase class I and II E3397_RS05585 PF00392 Bacterial regulatory proteins, gntR family E3397_RS05590 PF05957 Bacterial protein of unknown function (DUF883) E3397_RS05595 PF09400 Protein of unknown function (DUF2002) E3397_RS05600 PF06610 L-alanine exporter E3397_RS05610 PF00816 H-NS histone family E3397_RS05620 PF11127 Protein of unknown function (DUF2892) E3397_RS05620 PF00581 Rhodanese-like domain E3397_RS05625 PF01022 Bacterial regulatory protein, arsR family E3397_RS05630 PF01679 Proteolipid membrane potential modulator E3397_RS05640 PF01476 LysM domain E3397_RS05640 PF04972 BON domain E3397_RS05645 PF00392 Bacterial regulatory proteins, gntR family E3397_RS05645 PF07729 FCD domain E3397_RS05650 PF00324 Amino acid permease E3397_RS05655 PF00202 Aminotransferase class-III E3397_RS05660 PF00171 Aldehyde dehydrogenase family E3397_RS05665 PF01266 FAD dependent oxidoreductase E3397_RS05670 PF08943 CsiD E3397_RS05675 PF01970 Tripartite tricarboxylate transporter TctA family E3397_RS05690 PF00072 Response regulator receiver domain E3397_RS05690 PF00486 Transcriptional regulatory protein, C terminal E3397_RS05695 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS05695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS05700 PF03824 High-affinity nickel-transport protein E3397_RS05715 PF04393 Protein of unknown function (DUF535) E3397_RS05720 PF00805 Pentapeptide repeats (8 copies) E3397_RS05730 PF07715 TonB-dependent Receptor Plug Domain E3397_RS05730 PF00593 TonB dependent receptor E3397_RS05735 PF00756 Putative esterase E3397_RS05745 PF00664 ABC transporter transmembrane region E3397_RS05745 PF00005 ABC transporter E3397_RS05750 PF06722 Protein of unknown function (DUF1205) E3397_RS05760 PF00239 Resolvase, N terminal domain E3397_RS05760 PF02796 Helix-turn-helix domain of resolvase E3397_RS05765 PF00669 Bacterial flagellin N-terminal helical region E3397_RS05765 PF08884 Flagellin D3 domain E3397_RS05765 PF00700 Bacterial flagellin C-terminal helical region E3397_RS05770 PF03614 Repressor of phase-1 flagellin E3397_RS05810 PF00589 Phage integrase family E3397_RS05810 PF13356 Arm DNA-binding domain E3397_RS05820 PF00529 HlyD membrane-fusion protein of T1SS E3397_RS05820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3397_RS05825 PF00005 ABC transporter E3397_RS05825 PF00664 ABC transporter transmembrane region E3397_RS05840 PF01668 SmpB protein E3397_RS05845 PF03364 Polyketide cyclase / dehydrase and lipid transport E3397_RS05850 PF03658 RnfH family Ubiquitin E3397_RS05855 PF04355 SmpA / OmlA family E3397_RS05860 PF02463 RecF/RecN/SMC N terminal domain E3397_RS05865 PF01513 ATP-NAD kinase E3397_RS05870 PF01025 GrpE E3397_RS05880 PF01595 Cyclin M transmembrane N-terminal domain E3397_RS05880 PF03471 Transporter associated domain E3397_RS05880 PF00571 CBS domain E3397_RS05885 PF01578 Cytochrome C assembly protein E3397_RS05890 PF02978 Signal peptide binding domain E3397_RS05890 PF00448 SRP54-type protein, GTPase domain E3397_RS05890 PF02881 SRP54-type protein, helical bundle domain E3397_RS05895 PF00886 Ribosomal protein S16 E3397_RS05900 PF01782 RimM N-terminal domain E3397_RS05900 PF05239 PRC-barrel domain E3397_RS05905 PF01746 tRNA (Guanine-1)-methyltransferase E3397_RS05910 PF01245 Ribosomal protein L19 E3397_RS05915 PF17152 Periplasmic sensor domain E3397_RS05915 PF00990 Diguanylate cyclase, GGDEF domain E3397_RS05920 PF13689 YfiR/HmsC-like E3397_RS05925 PF00793 DAHP synthetase I family E3397_RS05930 PF01817 Chorismate mutase type II E3397_RS05930 PF02153 Prephenate dehydrogenase E3397_RS05935 PF08450 SMP-30/Gluconolactonase/LRE-like region E3397_RS05940 PF00800 Prephenate dehydratase E3397_RS05940 PF01817 Chorismate mutase type II E3397_RS05950 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E3397_RS05960 PF13525 Outer membrane lipoprotein E3397_RS05965 PF00849 RNA pseudouridylate synthase E3397_RS05965 PF01479 S4 domain E3397_RS05970 PF02578 Multi-copper polyphenol oxidoreductase laccase E3397_RS05975 PF00004 ATPase family associated with various cellular activities (AAA) E3397_RS05975 PF07724 AAA domain (Cdc48 subfamily) E3397_RS05975 PF02861 Clp amino terminal domain, pathogenicity island component E3397_RS05975 PF17871 AAA lid domain E3397_RS05975 PF10431 C-terminal, D2-small domain, of ClpB protein E3397_RS06005 PF00083 Sugar (and other) transporter E3397_RS06010 PF10043 Predicted periplasmic lipoprotein (DUF2279) E3397_RS06015 PF13091 PLD-like domain E3397_RS06020 PF13380 CoA binding domain E3397_RS06020 PF13607 Succinyl-CoA ligase like flavodoxin domain E3397_RS06020 PF00583 Acetyltransferase (GNAT) family E3397_RS06025 PF03942 DTW domain E3397_RS06030 PF00085 Thioredoxin E3397_RS06035 PF08032 RNA 2'-O ribose methyltransferase substrate binding E3397_RS06035 PF00588 SpoU rRNA Methylase family E3397_RS06040 PF03167 Uracil DNA glycosylase superfamily E3397_RS06045 PF01228 Glycine radical E3397_RS06050 PF01810 LysE type translocator E3397_RS06055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS06055 PF03466 LysR substrate binding domain E3397_RS06060 PF00270 DEAD/DEAH box helicase E3397_RS06060 PF00271 Helicase conserved C-terminal domain E3397_RS06065 PF05175 Methyltransferase small domain E3397_RS06070 PF00890 FAD binding domain E3397_RS06070 PF02910 Fumarate reductase flavoprotein C-term E3397_RS06085 PF04542 Sigma-70 region 2 E3397_RS06085 PF08281 Sigma-70, region 4 E3397_RS06090 PF03873 Anti sigma-E protein RseA, C-terminal domain E3397_RS06090 PF03872 Anti sigma-E protein RseA, N-terminal domain E3397_RS06095 PF03888 MucB/RseB N-terminal domain E3397_RS06095 PF17188 MucB/RseB C-terminal domain E3397_RS06105 PF00009 Elongation factor Tu GTP binding domain E3397_RS06105 PF06421 GTP-binding protein LepA C-terminus E3397_RS06105 PF00679 Elongation factor G C-terminus E3397_RS06105 PF03144 Elongation factor Tu domain 2 E3397_RS06110 PF10502 Signal peptidase, peptidase S26 E3397_RS06115 PF00035 Double-stranded RNA binding motif E3397_RS06115 PF14622 Ribonuclease-III-like E3397_RS06120 PF01926 50S ribosome-binding GTPase E3397_RS06120 PF07650 KH domain E3397_RS06125 PF02565 Recombination protein O C terminal E3397_RS06125 PF11967 Recombination protein O N terminal E3397_RS06130 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ E3397_RS06135 PF01648 4'-phosphopantetheinyl transferase superfamily E3397_RS06140 PF12838 4Fe-4S dicluster domain E3397_RS06145 PF03466 LysR substrate binding domain E3397_RS06145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS06150 PF07690 Major Facilitator Superfamily E3397_RS06155 PF08546 Ketopantoate reductase PanE/ApbA C terminal E3397_RS06155 PF02558 Ketopantoate reductase PanE/ApbA E3397_RS06160 PF01418 Helix-turn-helix domain, rpiR family E3397_RS06160 PF01380 SIS domain E3397_RS06165 PF01380 SIS domain E3397_RS06170 PF02378 Phosphotransferase system, EIIC E3397_RS06170 PF00367 phosphotransferase system, EIIB E3397_RS06180 PF14437 MafB19-like deaminase E3397_RS06185 PF01464 Transglycosylase SLT domain E3397_RS06185 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3397_RS06195 PF02769 AIR synthase related protein, C-terminal domain E3397_RS06195 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal E3397_RS06195 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain E3397_RS06200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS06200 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS06205 PF13942 YfhG lipoprotein E3397_RS06210 PF00072 Response regulator receiver domain E3397_RS06210 PF00158 Sigma-54 interaction domain E3397_RS06215 PF00543 Nitrogen regulatory protein P-II E3397_RS06220 PF00854 POT family E3397_RS06225 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain E3397_RS06225 PF01276 Orn/Lys/Arg decarboxylase, major domain E3397_RS06225 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain E3397_RS06230 PF13520 Amino acid permease E3397_RS06235 PF00486 Transcriptional regulatory protein, C terminal E3397_RS06235 PF18500 CadC C-terminal domain 1 E3397_RS06240 PF00175 Oxidoreductase NAD-binding domain E3397_RS06240 PF00042 Globin E3397_RS06240 PF00970 Oxidoreductase FAD-binding domain E3397_RS06245 PF00464 Serine hydroxymethyltransferase E3397_RS06250 PF12832 MFS_1 like family E3397_RS06255 PF00874 PRD domain E3397_RS06265 PF03824 High-affinity nickel-transport protein E3397_RS06270 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E3397_RS06270 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E3397_RS06270 PF13187 4Fe-4S dicluster domain E3397_RS06275 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B E3397_RS06275 PF00175 Oxidoreductase NAD-binding domain E3397_RS06280 PF17179 4Fe-4S dicluster domain E3397_RS06285 PF12146 Serine aminopeptidase, S33 E3397_RS06290 PF00459 Inositol monophosphatase family E3397_RS06295 PF00588 SpoU rRNA Methylase family E3397_RS06300 PF02082 Transcriptional regulator E3397_RS06305 PF00266 Aminotransferase class-V E3397_RS06310 PF01592 NifU-like N terminal domain E3397_RS06315 PF01521 Iron-sulphur cluster biosynthesis E3397_RS06320 PF07743 HSCB C-terminal oligomerisation domain E3397_RS06325 PF00012 Hsp70 protein E3397_RS06330 PF00111 2Fe-2S iron-sulfur cluster binding domain E3397_RS06335 PF04384 Iron-sulphur cluster assembly E3397_RS06345 PF12404 Peptidase E3397_RS06345 PF00883 Cytosol aminopeptidase family, catalytic domain E3397_RS06350 PF07179 SseB protein N-terminal domain E3397_RS06350 PF14581 SseB protein C-terminal domain E3397_RS06360 PF00581 Rhodanese-like domain E3397_RS06365 PF17962 Bacterial macroglobulin domain 6 E3397_RS06365 PF00207 Alpha-2-macroglobulin family E3397_RS06365 PF01835 MG2 domain E3397_RS06365 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain E3397_RS06365 PF11974 Bacterial alpha-2-macroglobulin MG3 domain E3397_RS06365 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain E3397_RS06365 PF07678 A-macroglobulin TED domain E3397_RS06365 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain E3397_RS06365 PF07703 Alpha-2-macroglobulin bait region domain E3397_RS06370 PF06832 Penicillin-Binding Protein C-terminus Family E3397_RS06370 PF00905 Penicillin binding protein transpeptidase domain E3397_RS06370 PF00912 Transglycosylase E3397_RS06375 PF01568 Molydopterin dinucleotide binding domain E3397_RS06375 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3397_RS06375 PF00384 Molybdopterin oxidoreductase E3397_RS06380 PF12800 4Fe-4S binding domain E3397_RS06380 PF13247 4Fe-4S dicluster domain E3397_RS06395 PF00334 Nucleoside diphosphate kinase E3397_RS06400 PF04055 Radical SAM superfamily E3397_RS06405 PF13464 Domain of unknown function (DUF4115) E3397_RS06410 PF04551 GcpE protein E3397_RS06415 PF13393 Histidyl-tRNA synthetase E3397_RS06415 PF03129 Anticodon binding domain E3397_RS06420 PF09976 Tetratricopeptide repeat-like domain E3397_RS06425 PF13360 PQQ-like domain E3397_RS06430 PF01926 50S ribosome-binding GTPase E3397_RS06430 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E3397_RS06435 PF07191 zinc-ribbons E3397_RS06440 PF11924 Inverse autotransporter, beta-domain E3397_RS06440 PF01476 LysM domain E3397_RS06440 PF02368 Bacterial Ig-like domain (group 2) E3397_RS06440 PF02369 Bacterial Ig-like domain (group 1) E3397_RS06440 PF07979 Intimin C-type lectin domain E3397_RS06465 PF03797 Autotransporter beta-domain E3397_RS06470 PF02601 Exonuclease VII, large subunit E3397_RS06470 PF13742 OB-fold nucleic acid binding domain E3397_RS06475 PF00478 IMP dehydrogenase / GMP reductase domain E3397_RS06475 PF00571 CBS domain E3397_RS06480 PF00958 GMP synthase C terminal domain E3397_RS06480 PF02540 NAD synthase E3397_RS06480 PF00117 Glutamine amidotransferase class-I E3397_RS06500 PF11119 Protein of unknown function (DUF2633) E3397_RS06510 PF05231 MASE1 E3397_RS06510 PF00563 EAL domain E3397_RS06515 PF02541 Ppx/GppA phosphatase family E3397_RS06520 PF13089 Polyphosphate kinase N-terminal domain E3397_RS06520 PF02503 Polyphosphate kinase middle domain E3397_RS06520 PF13090 Polyphosphate kinase C-terminal domain 2 E3397_RS06520 PF17941 Polyphosphate kinase C-terminal domain 1 E3397_RS06525 PF00551 Formyl transferase E3397_RS06530 PF00586 AIR synthase related protein, N-terminal domain E3397_RS06530 PF02769 AIR synthase related protein, C-terminal domain E3397_RS06540 PF00860 Permease family E3397_RS06545 PF00308 Bacterial dnaA protein E3397_RS06550 PF03960 ArsC family E3397_RS06555 PF01435 Peptidase family M48 E3397_RS06560 PF01594 AI-2E family transporter E3397_RS06565 PF13556 PucR C-terminal helix-turn-helix domain E3397_RS06565 PF17853 GGDEF-like domain E3397_RS06565 PF05651 Putative sugar diacid recognition E3397_RS06570 PF02447 GntP family permease E3397_RS06575 PF02595 Glycerate kinase family E3397_RS06580 PF00578 AhpC/TSA family E3397_RS06585 PF01842 ACT domain E3397_RS06590 PF00701 Dihydrodipicolinate synthetase family E3397_RS06595 PF06804 NlpB/DapX lipoprotein E3397_RS06600 PF01259 SAICAR synthetase E3397_RS06605 PF04228 Putative neutral zinc metallopeptidase E3397_RS06610 PF05127 Helicase E3397_RS06610 PF13718 GNAT acetyltransferase 2 E3397_RS06610 PF08351 Domain of unknown function (DUF1726) E3397_RS06610 PF17176 tRNA-binding domain E3397_RS06615 PF13980 Uncharacterised protein family (UPF0370) E3397_RS06620 PF01546 Peptidase family M20/M25/M40 E3397_RS06620 PF07687 Peptidase dimerisation domain E3397_RS06625 PF03960 ArsC family E3397_RS06635 PF00873 AcrB/AcrD/AcrF family E3397_RS06640 PF07730 Histidine kinase E3397_RS06640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS06640 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term E3397_RS06640 PF00672 HAMP domain E3397_RS06645 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS06645 PF13247 4Fe-4S dicluster domain E3397_RS06645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E3397_RS06650 PF00144 Beta-lactamase E3397_RS06655 PF00293 NUDIX domain E3397_RS06660 PF06674 Protein of unknown function (DUF1176) E3397_RS06670 PF00456 Transketolase, thiamine diphosphate binding domain E3397_RS06670 PF02780 Transketolase, C-terminal domain E3397_RS06670 PF02779 Transketolase, pyrimidine binding domain E3397_RS06675 PF00923 Transaldolase/Fructose-6-phosphate aldolase E3397_RS06680 PF00390 Malic enzyme, N-terminal domain E3397_RS06680 PF03949 Malic enzyme, NAD binding domain E3397_RS06680 PF01515 Phosphate acetyl/butaryl transferase E3397_RS06685 PF00936 BMC domain E3397_RS06690 PF10662 Ethanolamine utilisation - propanediol utilisation E3397_RS06695 PF06249 Ethanolamine utilisation protein EutQ E3397_RS06700 PF01923 Cobalamin adenosyltransferase E3397_RS06705 PF01515 Phosphate acetyl/butaryl transferase E3397_RS06710 PF00936 BMC domain E3397_RS06715 PF03319 Ethanolamine utilisation protein EutN/carboxysome E3397_RS06720 PF00171 Aldehyde dehydrogenase family E3397_RS06730 PF00465 Iron-containing alcohol dehydrogenase E3397_RS06735 PF04346 Ethanolamine utilisation protein, EutH E3397_RS06740 PF06277 Ethanolamine utilisation protein EutA E3397_RS06745 PF06751 Ethanolamine ammonia lyase large subunit (EutB) E3397_RS06750 PF05985 Ethanolamine ammonia-lyase light chain (EutC) E3397_RS06755 PF00936 BMC domain E3397_RS06760 PF16365 Ethanolamine utilization protein EutK C-terminus E3397_RS06760 PF00936 BMC domain E3397_RS06765 PF12833 Helix-turn-helix domain E3397_RS06770 PF09234 Domain of unknown function (DUF1963) E3397_RS06780 PF01218 Coproporphyrinogen III oxidase E3397_RS06785 PF01520 N-acetylmuramoyl-L-alanine amidase E3397_RS06790 PF00583 Acetyltransferase (GNAT) family E3397_RS06795 PF11143 Protein of unknown function (DUF2919) E3397_RS06800 PF06572 Protein of unknown function (DUF1131) E3397_RS06805 PF04261 Dyp-type peroxidase family E3397_RS06820 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS06825 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS06830 PF00005 ABC transporter E3397_RS06835 PF00291 Pyridoxal-phosphate dependent enzyme E3397_RS06840 PF00912 Transglycosylase E3397_RS06845 PF17263 Family of unknown function (DUF5329) E3397_RS06850 PF00117 Glutamine amidotransferase class-I E3397_RS06855 PF00155 Aminotransferase class I and II E3397_RS06855 PF00392 Bacterial regulatory proteins, gntR family E3397_RS06860 PF08543 Phosphomethylpyrimidine kinase E3397_RS06870 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E3397_RS06875 PF05524 PEP-utilising enzyme, N-terminal E3397_RS06875 PF02896 PEP-utilising enzyme, TIM barrel domain E3397_RS06875 PF00391 PEP-utilising enzyme, mobile domain E3397_RS06880 PF00381 PTS HPr component phosphorylation site E3397_RS06885 PF00291 Pyridoxal-phosphate dependent enzyme E3397_RS06895 PF04354 ZipA, C-terminal FtsZ-binding domain E3397_RS06900 PF03120 NAD-dependent DNA ligase OB-fold domain E3397_RS06900 PF01653 NAD-dependent DNA ligase adenylation domain E3397_RS06900 PF00533 BRCA1 C Terminus (BRCT) domain E3397_RS06900 PF12826 Helix-hairpin-helix motif E3397_RS06900 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E3397_RS06905 PF12843 Putative quorum-sensing-regulated virulence factor E3397_RS06910 PF13593 SBF-like CPA transporter family (DUF4137) E3397_RS06915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS06915 PF03466 LysR substrate binding domain E3397_RS06920 PF03502 Nucleoside-specific channel-forming protein, Tsx E3397_RS06925 PF01048 Phosphorylase superfamily E3397_RS06930 PF03825 Nucleoside H+ symporter E3397_RS06940 PF03466 LysR substrate binding domain E3397_RS06940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS06960 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3397_RS06965 PF07037 Putative transcription regulator (DUF1323) E3397_RS06970 PF07037 Putative transcription regulator (DUF1323) E3397_RS06985 PF05231 MASE1 E3397_RS06985 PF00563 EAL domain E3397_RS06990 PF07662 Na+ dependent nucleoside transporter C-terminus E3397_RS06990 PF07670 Nucleoside recognition E3397_RS06990 PF01773 Na+ dependent nucleoside transporter N-terminus E3397_RS06995 PF01566 Natural resistance-associated macrophage protein E3397_RS07000 PF10697 Protein of unknown function (DUF2502) E3397_RS07005 PF00248 Aldo/keto reductase family E3397_RS07010 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3397_RS07010 PF00205 Thiamine pyrophosphate enzyme, central domain E3397_RS07010 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3397_RS07015 PF00654 Voltage gated chloride channel E3397_RS07020 PF02685 Glucokinase E3397_RS07025 PF00155 Aminotransferase class I and II E3397_RS07035 PF03279 Bacterial lipid A biosynthesis acyltransferase E3397_RS07040 PF10810 Protein of unknown function (DUF2545) E3397_RS07045 PF07690 Major Facilitator Superfamily E3397_RS07055 PF00672 HAMP domain E3397_RS07055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS07055 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS07060 PF14532 Sigma-54 interaction domain E3397_RS07060 PF02954 Bacterial regulatory protein, Fis family E3397_RS07060 PF00072 Response regulator receiver domain E3397_RS07065 PF01278 Omptin family E3397_RS07075 PF01226 Formate/nitrite transporter E3397_RS07080 PF04333 MlaA lipoprotein E3397_RS07085 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) E3397_RS07090 PF04175 Protein of unknown function (DUF406) E3397_RS07095 PF02803 Thiolase, C-terminal domain E3397_RS07095 PF00108 Thiolase, N-terminal domain E3397_RS07100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3397_RS07100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3397_RS07100 PF00378 Enoyl-CoA hydratase/isomerase E3397_RS07105 PF00300 Histidine phosphatase superfamily (branch 1) E3397_RS07110 PF01713 Smr domain E3397_RS07115 PF05175 Methyltransferase small domain E3397_RS07120 PF01264 Chorismate synthase E3397_RS07125 PF03411 Penicillin-insensitive murein endopeptidase E3397_RS07130 PF01925 Sulfite exporter TauE/SafE E3397_RS07135 PF04315 Elongation factor P hydroxylase E3397_RS07140 PF08891 YfcL protein E3397_RS07145 PF01266 FAD dependent oxidoreductase E3397_RS07145 PF05430 S-adenosyl-L-methionine-dependent methyltransferase E3397_RS07150 PF00109 Beta-ketoacyl synthase, N-terminal domain E3397_RS07150 PF02801 Beta-ketoacyl synthase, C-terminal domain E3397_RS07155 PF02517 CPBP intramembrane metalloprotease E3397_RS07170 PF13693 Winged helix-turn-helix DNA-binding E3397_RS07180 PF07690 Major Facilitator Superfamily E3397_RS07190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3397_RS07190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3397_RS07190 PF11890 Domain of unknown function (DUF3410) E3397_RS07195 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3397_RS07195 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3397_RS07200 PF01416 tRNA pseudouridine synthase E3397_RS07205 PF09335 SNARE associated Golgi protein E3397_RS07210 PF01039 Carboxyl transferase domain E3397_RS07210 PF17848 Acetyl-coA carboxylase zinc finger domain E3397_RS07215 PF02875 Mur ligase family, glutamate ligase domain E3397_RS07215 PF08245 Mur ligase middle domain E3397_RS07220 PF05036 Sporulation related domain E3397_RS07225 PF02674 Colicin V production protein E3397_RS07230 PF00156 Phosphoribosyl transferase domain E3397_RS07235 PF02954 Bacterial regulatory protein, Fis family E3397_RS07235 PF13426 PAS domain E3397_RS07235 PF00158 Sigma-54 interaction domain E3397_RS07240 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3397_RS07240 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E3397_RS07245 PF13520 Amino acid permease E3397_RS07250 PF01168 Alanine racemase, N-terminal domain E3397_RS07255 PF00324 Amino acid permease E3397_RS07260 PF02441 Flavoprotein E3397_RS07265 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3397_RS07270 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3397_RS07275 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS07280 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS07285 PF00005 ABC transporter E3397_RS07290 PF01370 NAD dependent epimerase/dehydratase family E3397_RS07290 PF08338 Domain of unknown function (DUF1731) E3397_RS07295 PF02798 Glutathione S-transferase, N-terminal domain E3397_RS07295 PF00043 Glutathione S-transferase, C-terminal domain E3397_RS07300 PF14834 Glutathione S-transferase, C-terminal domain E3397_RS07300 PF02798 Glutathione S-transferase, N-terminal domain E3397_RS07305 PF12850 Calcineurin-like phosphoesterase superfamily domain E3397_RS07310 PF00293 NUDIX domain E3397_RS07315 PF00356 Bacterial regulatory proteins, lacI family E3397_RS07320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3397_RS07330 PF03611 PTS system sugar-specific permease component E3397_RS07335 PF00456 Transketolase, thiamine diphosphate binding domain E3397_RS07340 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E3397_RS07340 PF02779 Transketolase, pyrimidine binding domain E3397_RS07340 PF02780 Transketolase, C-terminal domain E3397_RS07345 PF03606 C4-dicarboxylate anaerobic carrier E3397_RS07350 PF01515 Phosphate acetyl/butaryl transferase E3397_RS07350 PF07085 DRTGG domain E3397_RS07355 PF00871 Acetokinase family E3397_RS07360 PF04217 Protein of unknown function, DUF412 E3397_RS07365 PF03887 YfbU domain E3397_RS07370 PF13419 Haloacid dehalogenase-like hydrolase E3397_RS07375 PF03600 Citrate transporter E3397_RS07375 PF02080 TrkA-C domain E3397_RS07390 PF00155 Aminotransferase class I and II E3397_RS07395 PF03466 LysR substrate binding domain E3397_RS07395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS07405 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 E3397_RS07410 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3397_RS07415 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit E3397_RS07415 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit E3397_RS07425 PF10531 SLBB domain E3397_RS07425 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region E3397_RS07425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E3397_RS07430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3397_RS07430 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region E3397_RS07430 PF01568 Molydopterin dinucleotide binding domain E3397_RS07430 PF00384 Molybdopterin oxidoreductase E3397_RS07435 PF00146 NADH dehydrogenase E3397_RS07440 PF12838 4Fe-4S dicluster domain E3397_RS07445 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 E3397_RS07450 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L E3397_RS07455 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus E3397_RS07455 PF00361 Proton-conducting membrane transporter E3397_RS07460 PF00361 Proton-conducting membrane transporter E3397_RS07465 PF00361 Proton-conducting membrane transporter E3397_RS07470 PF01584 CheW-like domain E3397_RS07470 PF00072 Response regulator receiver domain E3397_RS07475 PF12706 Beta-lactamase superfamily domain E3397_RS07480 PF13673 Acetyltransferase (GNAT) domain E3397_RS07485 PF05957 Bacterial protein of unknown function (DUF883) E3397_RS07490 PF00425 chorismate binding enzyme E3397_RS07495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3397_RS07495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3397_RS07495 PF16582 Middle domain of thiamine pyrophosphate E3397_RS07500 PF12697 Alpha/beta hydrolase family E3397_RS07505 PF00378 Enoyl-CoA hydratase/isomerase E3397_RS07510 PF13378 Enolase C-terminal domain-like E3397_RS07515 PF13193 AMP-binding enzyme C-terminal domain E3397_RS07515 PF00501 AMP-binding enzyme E3397_RS07530 PF00892 EamA-like transporter family E3397_RS07535 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase E3397_RS07540 PF01522 Polysaccharide deacetylase E3397_RS07545 PF02911 Formyl transferase, C-terminal domain E3397_RS07545 PF00551 Formyl transferase E3397_RS07545 PF01370 NAD dependent epimerase/dehydratase family E3397_RS07550 PF00535 Glycosyl transferase family 2 E3397_RS07555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E3397_RS07560 PF00300 Histidine phosphatase superfamily (branch 1) E3397_RS07565 PF00293 NUDIX domain E3397_RS07570 PF07437 YfaZ precursor E3397_RS07575 PF00994 Probable molybdopterin binding domain E3397_RS07580 PF01614 Bacterial transcriptional regulator E3397_RS07580 PF09339 IclR helix-turn-helix domain E3397_RS07585 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3397_RS07585 PF13378 Enolase C-terminal domain-like E3397_RS07590 PF07690 Major Facilitator Superfamily E3397_RS07595 PF03328 HpcH/HpaI aldolase/citrate lyase family E3397_RS07600 PF00994 Probable molybdopterin binding domain E3397_RS07610 PF13183 4Fe-4S dicluster domain E3397_RS07610 PF02754 Cysteine-rich domain E3397_RS07615 PF00890 FAD binding domain E3397_RS07620 PF04324 BFD-like [2Fe-2S] binding domain E3397_RS07620 PF01266 FAD dependent oxidoreductase E3397_RS07625 PF07690 Major Facilitator Superfamily E3397_RS07630 PF03009 Glycerophosphoryl diester phosphodiesterase family E3397_RS07635 PF03466 LysR substrate binding domain E3397_RS07635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS07640 PF07690 Major Facilitator Superfamily E3397_RS07645 PF00111 2Fe-2S iron-sulfur cluster binding domain E3397_RS07650 PF00268 Ribonucleotide reductase, small chain E3397_RS07655 PF02867 Ribonucleotide reductase, barrel domain E3397_RS07655 PF00317 Ribonucleotide reductase, all-alpha domain E3397_RS07655 PF03477 ATP cone domain E3397_RS07670 PF07690 Major Facilitator Superfamily E3397_RS07675 PF13378 Enolase C-terminal domain-like E3397_RS07675 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3397_RS07680 PF00521 DNA gyrase/topoisomerase IV, subunit A E3397_RS07680 PF03989 DNA gyrase C-terminal domain, beta-propeller E3397_RS07685 PF00072 Response regulator receiver domain E3397_RS07685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS07685 PF09456 RcsC Alpha-Beta-Loop (ABL) E3397_RS07685 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS07690 PF00196 Bacterial regulatory proteins, luxR family E3397_RS07690 PF00072 Response regulator receiver domain E3397_RS07695 PF01627 Hpt domain E3397_RS07695 PF16359 RcsD-ABL domain E3397_RS07695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS07700 PF00267 Gram-negative porin E3397_RS07705 PF02424 ApbE family E3397_RS07710 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3397_RS07710 PF12833 Helix-turn-helix domain E3397_RS07710 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E3397_RS07710 PF02805 Metal binding domain of Ada E3397_RS07715 PF13532 2OG-Fe(II) oxygenase superfamily E3397_RS07720 PF00005 ABC transporter E3397_RS07725 PF03974 Ecotin E3397_RS07730 PF13187 4Fe-4S dicluster domain E3397_RS07730 PF00037 4Fe-4S binding domain E3397_RS07730 PF12800 4Fe-4S binding domain E3397_RS07735 PF03927 NapD protein E3397_RS07740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3397_RS07740 PF01568 Molydopterin dinucleotide binding domain E3397_RS07740 PF00384 Molybdopterin oxidoreductase E3397_RS07745 PF12838 4Fe-4S dicluster domain E3397_RS07745 PF12800 4Fe-4S binding domain E3397_RS07750 PF12801 4Fe-4S binding domain E3397_RS07750 PF13237 4Fe-4S dicluster domain E3397_RS07755 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) E3397_RS07760 PF03264 NapC/NirT cytochrome c family, N-terminal region E3397_RS07765 PF00005 ABC transporter E3397_RS07770 PF03379 CcmB protein E3397_RS07775 PF01578 Cytochrome C assembly protein E3397_RS07780 PF04995 Heme exporter protein D (CcmD) E3397_RS07785 PF03100 CcmE E3397_RS07790 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E3397_RS07790 PF01578 Cytochrome C assembly protein E3397_RS07795 PF08534 Redoxin E3397_RS07800 PF03918 Cytochrome C biogenesis protein E3397_RS07805 PF00072 Response regulator receiver domain E3397_RS07805 PF00196 Bacterial regulatory proteins, luxR family E3397_RS07820 PF08400 Prophage tail fibre N-terminal E3397_RS07820 PF07484 Phage Tail Collar Domain E3397_RS07820 PF03335 Phage tail fibre repeat E3397_RS07830 PF14496 C-terminal novel E3 ligase, LRR-interacting E3397_RS07830 PF12468 Type III secretion system leucine rich repeat protein E3397_RS07845 PF00884 Sulfatase E3397_RS07845 PF11893 Domain of unknown function (DUF3413) E3397_RS07850 PF07208 Protein of unknown function (DUF1414) E3397_RS07855 PF04245 37-kD nucleoid-associated bacterial protein E3397_RS07865 PF01386 Ribosomal L25p family E3397_RS07870 PF04851 Type III restriction enzyme, res subunit E3397_RS07870 PF00271 Helicase conserved C-terminal domain E3397_RS07875 PF01479 S4 domain E3397_RS07875 PF00849 RNA pseudouridylate synthase E3397_RS07880 PF07690 Major Facilitator Superfamily E3397_RS07885 PF13989 YejG-like protein E3397_RS07890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3397_RS07890 PF00005 ABC transporter E3397_RS07895 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS07895 PF12911 N-terminal TM domain of oligopeptide transport permease C E3397_RS07900 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS07905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3397_RS07910 PF12792 CSS motif domain associated with EAL E3397_RS07910 PF00563 EAL domain E3397_RS07915 PF00877 NlpC/P60 family E3397_RS07920 PF01569 PAP2 superfamily E3397_RS07925 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3397_RS07925 PF07683 Cobalamin synthesis protein cobW C-terminal domain E3397_RS07930 PF09285 Elongation factor P, C-terminal E3397_RS07930 PF01132 Elongation factor P (EF-P) OB domain E3397_RS07930 PF08207 Elongation factor P (EF-P) KOW-like domain E3397_RS07935 PF03692 Putative zinc- or iron-chelating domain E3397_RS07950 PF07690 Major Facilitator Superfamily E3397_RS07955 PF00381 PTS HPr component phosphorylation site E3397_RS07955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3397_RS07960 PF00294 pfkB family carbohydrate kinase E3397_RS07965 PF02378 Phosphotransferase system, EIIC E3397_RS07965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3397_RS07970 PF01261 Xylose isomerase-like TIM barrel E3397_RS07975 PF03601 Conserved hypothetical protein 698 E3397_RS07980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS07980 PF03466 LysR substrate binding domain E3397_RS07985 PF00324 Amino acid permease E3397_RS07990 PF07715 TonB-dependent Receptor Plug Domain E3397_RS07990 PF00593 TonB dependent receptor E3397_RS07995 PF07690 Major Facilitator Superfamily E3397_RS08000 PF18429 Domain of unknown function (DUF5609) E3397_RS08005 PF03315 Serine dehydratase beta chain E3397_RS08005 PF03313 Serine dehydratase alpha chain E3397_RS08015 PF00756 Putative esterase E3397_RS08020 PF01227 GTP cyclohydrolase I E3397_RS08025 PF04235 Protein of unknown function (DUF418) E3397_RS08030 PF00356 Bacterial regulatory proteins, lacI family E3397_RS08035 PF13407 Periplasmic binding protein domain E3397_RS08040 PF00005 ABC transporter E3397_RS08045 PF02653 Branched-chain amino acid transport system / permease component E3397_RS08050 PF01180 Dihydroorotate dehydrogenase E3397_RS08055 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS08055 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E3397_RS08060 PF10808 Protein of unknown function (DUF2542) E3397_RS08065 PF02698 DUF218 domain E3397_RS08070 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E3397_RS08070 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region E3397_RS08075 PF04172 LrgB-like family E3397_RS08080 PF03788 LrgA family E3397_RS08085 PF03466 LysR substrate binding domain E3397_RS08085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS08090 PF07690 Major Facilitator Superfamily E3397_RS08095 PF07883 Cupin domain E3397_RS08100 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3397_RS08105 PF02798 Glutathione S-transferase, N-terminal domain E3397_RS08105 PF14497 Glutathione S-transferase, C-terminal domain E3397_RS08110 PF01494 FAD binding domain E3397_RS08115 PF01207 Dihydrouridine synthase (Dus) E3397_RS08125 PF02321 Outer membrane efflux protein E3397_RS08135 PF09335 SNARE associated Golgi protein E3397_RS08140 PF04893 Yip1 domain E3397_RS08145 PF00768 D-alanyl-D-alanine carboxypeptidase E3397_RS08150 PF01565 FAD binding domain E3397_RS08150 PF09330 D-lactate dehydrogenase, membrane binding E3397_RS08155 PF01915 Glycosyl hydrolase family 3 C-terminal domain E3397_RS08155 PF00933 Glycosyl hydrolase family 3 N terminal domain E3397_RS08155 PF14310 Fibronectin type III-like domain E3397_RS08160 PF04069 Substrate binding domain of ABC-type glycine betaine transport system E3397_RS08165 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS08170 PF00005 ABC transporter E3397_RS08175 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS08185 PF13411 MerR HTH family regulatory protein E3397_RS08190 PF07694 5TMR of 5TMR-LYT E3397_RS08190 PF06580 Histidine kinase E3397_RS08195 PF04397 LytTr DNA-binding domain E3397_RS08195 PF00072 Response regulator receiver domain E3397_RS08200 PF07308 Protein of unknown function (DUF1456) E3397_RS08210 PF06998 Protein of unknown function (DUF1307) E3397_RS08215 PF09334 tRNA synthetases class I (M) E3397_RS08215 PF01588 Putative tRNA binding domain E3397_RS08220 PF10609 NUBPL iron-transfer P-loop NTPase E3397_RS08235 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS08235 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS08240 PF00577 Outer membrane usher protein E3397_RS08240 PF13954 PapC N-terminal domain E3397_RS08240 PF13953 PapC C-terminal domain E3397_RS08245 PF00419 Fimbrial protein E3397_RS08250 PF11776 Nickel/cobalt transporter regulator E3397_RS08255 PF02110 Hydroxyethylthiazole kinase family E3397_RS08260 PF08543 Phosphomethylpyrimidine kinase E3397_RS08265 PF00392 Bacterial regulatory proteins, gntR family E3397_RS08265 PF07702 UTRA domain E3397_RS08270 PF00294 pfkB family carbohydrate kinase E3397_RS08275 PF03747 ADP-ribosylglycohydrolase E3397_RS08280 PF03825 Nucleoside H+ symporter E3397_RS08285 PF01791 DeoC/LacD family aldolase E3397_RS08290 PF00781 Diacylglycerol kinase catalytic domain E3397_RS08300 PF05932 Tir chaperone protein (CesT) family E3397_RS08310 PF16325 Peptidase family U32 C-terminal domain E3397_RS08310 PF01136 Peptidase family U32 E3397_RS08330 PF00486 Transcriptional regulatory protein, C terminal E3397_RS08330 PF00072 Response regulator receiver domain E3397_RS08335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS08335 PF00672 HAMP domain E3397_RS08335 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS08340 PF07690 Major Facilitator Superfamily E3397_RS08345 PF00873 AcrB/AcrD/AcrF family E3397_RS08350 PF00873 AcrB/AcrD/AcrF family E3397_RS08355 PF13533 Biotin-lipoyl like E3397_RS08365 PF00012 Hsp70 protein E3397_RS08370 PF06029 AlkA N-terminal domain E3397_RS08370 PF00730 HhH-GPD superfamily base excision DNA repair protein E3397_RS08375 PF00990 Diguanylate cyclase, GGDEF domain E3397_RS08375 PF00563 EAL domain E3397_RS08375 PF13426 PAS domain E3397_RS08375 PF08448 PAS fold E3397_RS08375 PF08447 PAS fold E3397_RS08375 PF05231 MASE1 E3397_RS08380 PF00485 Phosphoribulokinase / Uridine kinase family E3397_RS08385 PF00692 dUTPase E3397_RS08390 PF05170 AsmA family E3397_RS08395 PF00571 CBS domain E3397_RS08395 PF03471 Transporter associated domain E3397_RS08395 PF03741 Integral membrane protein TerC family E3397_RS08400 PF02563 Polysaccharide biosynthesis/export protein E3397_RS08400 PF10531 SLBB domain E3397_RS08400 PF18412 Outer-membrane lipoprotein Wza C-terminal domain E3397_RS08405 PF01451 Low molecular weight phosphotyrosine protein phosphatase E3397_RS08410 PF02706 Chain length determinant protein E3397_RS08410 PF13614 AAA domain E3397_RS08410 PF13807 G-rich domain on putative tyrosine kinase E3397_RS08415 PF00535 Glycosyl transferase family 2 E3397_RS08420 PF00132 Bacterial transferase hexapeptide (six repeats) E3397_RS08425 PF00534 Glycosyl transferases group 1 E3397_RS08425 PF13439 Glycosyltransferase Family 4 E3397_RS08435 PF00535 Glycosyl transferase family 2 E3397_RS08440 PF00132 Bacterial transferase hexapeptide (six repeats) E3397_RS08445 PF16363 GDP-mannose 4,6 dehydratase E3397_RS08450 PF01370 NAD dependent epimerase/dehydratase family E3397_RS08455 PF00293 NUDIX domain E3397_RS08460 PF00534 Glycosyl transferases group 1 E3397_RS08460 PF13579 Glycosyl transferase 4-like domain E3397_RS08465 PF00483 Nucleotidyl transferase E3397_RS08465 PF01050 Mannose-6-phosphate isomerase E3397_RS08470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3397_RS08470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3397_RS08470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3397_RS08470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3397_RS08475 PF02397 Bacterial sugar transferase E3397_RS08485 PF04230 Polysaccharide pyruvyl transferase E3397_RS08490 PF13439 Glycosyltransferase Family 4 E3397_RS08490 PF00534 Glycosyl transferases group 1 E3397_RS08500 PF00483 Nucleotidyl transferase E3397_RS08515 PF00534 Glycosyl transferases group 1 E3397_RS08515 PF09318 Glycosyl transferase 1 domain A E3397_RS08525 PF01050 Mannose-6-phosphate isomerase E3397_RS08525 PF00483 Nucleotidyl transferase E3397_RS08530 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3397_RS08530 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3397_RS08530 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3397_RS08530 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3397_RS08540 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain E3397_RS08540 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3397_RS08545 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E3397_RS08545 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E3397_RS08550 PF02706 Chain length determinant protein E3397_RS08555 PF01502 Phosphoribosyl-AMP cyclohydrolase E3397_RS08555 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase E3397_RS08560 PF00977 Histidine biosynthesis protein E3397_RS08565 PF00977 Histidine biosynthesis protein E3397_RS08570 PF00117 Glutamine amidotransferase class-I E3397_RS08575 PF00475 Imidazoleglycerol-phosphate dehydratase E3397_RS08580 PF00155 Aminotransferase class I and II E3397_RS08585 PF00815 Histidinol dehydrogenase E3397_RS08590 PF01634 ATP phosphoribosyltransferase E3397_RS08590 PF08029 HisG, C-terminal domain E3397_RS08600 PF01370 NAD dependent epimerase/dehydratase family E3397_RS08605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS08605 PF03466 LysR substrate binding domain E3397_RS08615 PF13520 Amino acid permease E3397_RS08620 PF00929 Exonuclease E3397_RS08620 PF08411 Exonuclease C-terminal E3397_RS08625 PF13979 SopA-like catalytic domain E3397_RS08625 PF13981 SopA-like central domain E3397_RS08635 PF00384 Molybdopterin oxidoreductase E3397_RS08635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3397_RS08635 PF01568 Molydopterin dinucleotide binding domain E3397_RS08640 PF13247 4Fe-4S dicluster domain E3397_RS08640 PF12800 4Fe-4S binding domain E3397_RS08645 PF01292 Prokaryotic cytochrome b561 E3397_RS08650 PF07943 Penicillin-binding protein 5, C-terminal domain E3397_RS08650 PF00768 D-alanyl-D-alanine carboxypeptidase E3397_RS08655 PF06445 GyrI-like small molecule binding domain E3397_RS08660 PF04632 Fusaric acid resistance protein family E3397_RS08665 PF04363 Protein of unknown function (DUF496) E3397_RS08670 PF00288 GHMP kinases N terminal domain E3397_RS08675 PF00871 Acetokinase family E3397_RS08680 PF10662 Ethanolamine utilisation - propanediol utilisation E3397_RS08685 PF00936 BMC domain E3397_RS08695 PF13237 4Fe-4S dicluster domain E3397_RS08695 PF13375 RnfC Barrel sandwich hybrid domain E3397_RS08695 PF10531 SLBB domain E3397_RS08695 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E3397_RS08700 PF00465 Iron-containing alcohol dehydrogenase E3397_RS08700 PF00171 Aldehyde dehydrogenase family E3397_RS08705 PF00171 Aldehyde dehydrogenase family E3397_RS08710 PF01923 Cobalamin adenosyltransferase E3397_RS08715 PF03319 Ethanolamine utilisation protein EutN/carboxysome E3397_RS08725 PF06130 Phosphate propanoyltransferase E3397_RS08730 PF00936 BMC domain E3397_RS08735 PF00936 BMC domain E3397_RS08745 PF08841 Diol dehydratase reactivase ATPase-like domain E3397_RS08745 PF18427 DD-reactivating factor swiveling domain E3397_RS08750 PF02287 Dehydratase small subunit E3397_RS08755 PF02288 Dehydratase medium subunit E3397_RS08760 PF02286 Dehydratase large subunit E3397_RS08765 PF00936 BMC domain E3397_RS08770 PF00936 BMC domain E3397_RS08775 PF00230 Major intrinsic protein E3397_RS08780 PF10114 Sensory domain found in PocR E3397_RS08780 PF12833 Helix-turn-helix domain E3397_RS08785 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3397_RS08785 PF07685 CobB/CobQ-like glutamine amidotransferase domain E3397_RS08790 PF03186 CobD/Cbib protein E3397_RS08795 PF02570 Precorrin-8X methylmutase E3397_RS08800 PF01888 CbiD E3397_RS08805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3397_RS08810 PF05175 Methyltransferase small domain E3397_RS08815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3397_RS08820 PF01890 Cobalamin synthesis G C-terminus E3397_RS08820 PF11761 Cobalamin biosynthesis central region E3397_RS08820 PF11760 Cobalamin synthesis G N-terminal E3397_RS08825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3397_RS08830 PF02571 Precorrin-6x reductase CbiJ/CobK E3397_RS08835 PF06180 Cobalt chelatase (CbiK) E3397_RS08840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3397_RS08845 PF01891 Cobalt uptake substrate-specific transmembrane region E3397_RS08850 PF02553 Cobalt transport protein component CbiN E3397_RS08855 PF02361 Cobalt transport protein E3397_RS08860 PF00005 ABC transporter E3397_RS08865 PF07685 CobB/CobQ-like glutamine amidotransferase domain E3397_RS08870 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase E3397_RS08875 PF02654 Cobalamin-5-phosphate synthase E3397_RS08880 PF02277 Phosphoribosyltransferase E3397_RS08885 PF03734 L,D-transpeptidase catalytic domain E3397_RS08885 PF17969 L,D-transpeptidase C-terminal domain E3397_RS08895 PF01554 MatE E3397_RS08920 PF13358 DDE superfamily endonuclease E3397_RS08920 PF13592 Winged helix-turn helix E3397_RS08945 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus E3397_RS08945 PF01048 Phosphorylase superfamily E3397_RS08990 PF13356 Arm DNA-binding domain E3397_RS08990 PF00589 Phage integrase family E3397_RS09000 PF06167 Glucose-regulated metallo-peptidase M90 E3397_RS09020 PF00717 Peptidase S24-like E3397_RS09025 PF00817 impB/mucB/samB family E3397_RS09025 PF11799 impB/mucB/samB family C-terminal domain E3397_RS09025 PF13438 Domain of unknown function (DUF4113) E3397_RS09030 PF00313 'Cold-shock' DNA-binding domain E3397_RS09040 PF00267 Gram-negative porin E3397_RS09050 PF01966 HD domain E3397_RS09055 PF18284 DNA methylase N-terminal domain E3397_RS09055 PF00145 C-5 cytosine-specific DNA methylase E3397_RS09060 PF03852 DNA mismatch endonuclease Vsr E3397_RS09065 PF00892 EamA-like transporter family E3397_RS09070 PF05661 Protein of unknown function (DUF808) E3397_RS09075 PF09926 Uncharacterized small protein (DUF2158) E3397_RS09080 PF17151 Periplasmic sensor domain E3397_RS09080 PF00990 Diguanylate cyclase, GGDEF domain E3397_RS09090 PF10733 Protein of unknown function (DUF2525) E3397_RS09095 PF10781 Dextransucrase DSRB E3397_RS09100 PF00196 Bacterial regulatory proteins, luxR family E3397_RS09105 PF01311 Bacterial export proteins, family 1 E3397_RS09110 PF01313 Bacterial export proteins, family 3 E3397_RS09115 PF00813 FliP family E3397_RS09120 PF04347 Flagellar biosynthesis protein, FliO E3397_RS09125 PF16973 Flagellar motor switch protein FliN N-terminal E3397_RS09125 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3397_RS09130 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3397_RS09130 PF02154 Flagellar motor switch protein FliM E3397_RS09135 PF03748 Flagellar basal body-associated protein FliL E3397_RS09140 PF02120 Flagellar hook-length control protein FliK E3397_RS09145 PF02050 Flagellar FliJ protein E3397_RS09150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3397_RS09150 PF18269 T3SS EscN ATPase C-terminal domain E3397_RS09155 PF02108 Flagellar assembly protein FliH E3397_RS09160 PF14842 FliG N-terminal domain E3397_RS09160 PF14841 FliG middle domain E3397_RS09160 PF01706 FliG C-terminal domain E3397_RS09165 PF08345 Flagellar M-ring protein C-terminal E3397_RS09165 PF01514 Secretory protein of YscJ/FliF family E3397_RS09170 PF02049 Flagellar hook-basal body complex protein FliE E3397_RS09180 PF01206 Sulfurtransferase TusA E3397_RS09185 PF04143 Sulphur transport E3397_RS09190 PF13987 YedD-like protein E3397_RS09195 PF00128 Alpha amylase, catalytic domain E3397_RS09195 PF02806 Alpha amylase, C-terminal all-beta domain E3397_RS09200 PF05400 Flagellar protein FliT E3397_RS09205 PF02561 Flagellar protein FliS E3397_RS09210 PF02465 Flagellar hook-associated protein 2 N-terminus E3397_RS09210 PF07195 Flagellar hook-associated protein 2 C-terminus E3397_RS09210 PF07196 Flagellin hook IN motif E3397_RS09215 PF08884 Flagellin D3 domain E3397_RS09215 PF00669 Bacterial flagellin N-terminal helical region E3397_RS09215 PF00700 Bacterial flagellin C-terminal helical region E3397_RS09225 PF04545 Sigma-70, region 4 E3397_RS09225 PF04542 Sigma-70 region 2 E3397_RS09225 PF04539 Sigma-70 region 3 E3397_RS09230 PF02899 Phage integrase, N-terminal SAM-like domain E3397_RS09235 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3397_RS09240 PF00291 Pyridoxal-phosphate dependent enzyme E3397_RS09245 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS09250 PF00005 ABC transporter E3397_RS09255 PF03472 Autoinducer binding domain E3397_RS09255 PF00196 Bacterial regulatory proteins, luxR family E3397_RS09260 PF10769 Protein of unknown function (DUF2594) E3397_RS09270 PF00072 Response regulator receiver domain E3397_RS09270 PF00196 Bacterial regulatory proteins, luxR family E3397_RS09275 PF02151 UvrB/uvrC motif E3397_RS09275 PF01541 GIY-YIG catalytic domain E3397_RS09275 PF08459 UvrC Helix-hairpin-helix N-terminal E3397_RS09280 PF01066 CDP-alcohol phosphatidyltransferase E3397_RS09315 PF03695 Uncharacterised protein family (UPF0149) E3397_RS09315 PF02810 SEC-C motif E3397_RS09320 PF03222 Tryptophan/tyrosine permease family E3397_RS09325 PF10678 Protein of unknown function (DUF2492) E3397_RS09330 PF00210 Ferritin-like domain E3397_RS09335 PF13992 YecR-like lipoprotein E3397_RS09345 PF00210 Ferritin-like domain E3397_RS09360 PF02358 Trehalose-phosphatase E3397_RS09365 PF00982 Glycosyltransferase family 20 E3397_RS09370 PF00582 Universal stress protein family E3397_RS09380 PF05247 Flagellar transcriptional activator (FlhD) E3397_RS09385 PF05280 Flagellar transcriptional activator (FlhC) E3397_RS09390 PF01618 MotA/TolQ/ExbB proton channel family E3397_RS09395 PF00691 OmpA family E3397_RS09395 PF13677 Membrane MotB of proton-channel complex MotA/MotB E3397_RS09400 PF09078 CheY binding E3397_RS09400 PF01627 Hpt domain E3397_RS09400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS09400 PF01584 CheW-like domain E3397_RS09400 PF02895 Signal transducing histidine kinase, homodimeric domain E3397_RS09405 PF01584 CheW-like domain E3397_RS09410 PF00672 HAMP domain E3397_RS09410 PF02203 Tar ligand binding domain homologue E3397_RS09410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3397_RS09415 PF01739 CheR methyltransferase, SAM binding domain E3397_RS09415 PF03705 CheR methyltransferase, all-alpha domain E3397_RS09420 PF00072 Response regulator receiver domain E3397_RS09420 PF01339 CheB methylesterase E3397_RS09425 PF00072 Response regulator receiver domain E3397_RS09430 PF04344 Chemotaxis phosphatase, CheZ E3397_RS09435 PF01312 FlhB HrpN YscU SpaS Family E3397_RS09440 PF00771 FHIPEP family E3397_RS09445 PF06366 Flagellar protein FlhE E3397_RS09450 PF07470 Glycosyl Hydrolase Family 88 E3397_RS09455 PF00905 Penicillin binding protein transpeptidase domain E3397_RS09455 PF03717 Penicillin-binding Protein dimerisation domain E3397_RS09460 PF05746 DALR anticodon binding domain E3397_RS09460 PF03485 Arginyl tRNA synthetase N terminal domain E3397_RS09460 PF00750 tRNA synthetases class I (R) E3397_RS09465 PF06185 YecM protein E3397_RS09470 PF03932 CutC family E3397_RS09475 PF08003 Protein of unknown function (DUF1698) E3397_RS09480 PF13649 Methyltransferase domain E3397_RS09485 PF01124 MAPEG family E3397_RS09490 PF01904 Protein of unknown function DUF72 E3397_RS09495 PF00857 Isochorismatase family E3397_RS09500 PF00152 tRNA synthetases class II (D, K and N) E3397_RS09500 PF02938 GAD domain E3397_RS09500 PF01336 OB-fold nucleic acid binding domain E3397_RS09505 PF00293 NUDIX domain E3397_RS09510 PF01709 Transcriptional regulator E3397_RS09515 PF02075 Crossover junction endodeoxyribonuclease RuvC E3397_RS09525 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family E3397_RS09535 PF07499 RuvA, C-terminal domain E3397_RS09535 PF01330 RuvA N terminal domain E3397_RS09540 PF05491 RuvB C-terminal winged helix domain E3397_RS09540 PF17864 RuvB AAA lid domain E3397_RS09540 PF05496 Holliday junction DNA helicase RuvB P-loop domain E3397_RS09545 PF00950 ABC 3 transport family E3397_RS09550 PF00005 ABC transporter E3397_RS09555 PF01297 Zinc-uptake complex component A periplasmic E3397_RS09560 PF01551 Peptidase family M23 E3397_RS09560 PF08525 Opacity-associated protein A N-terminal motif E3397_RS09560 PF01476 LysM domain E3397_RS09565 PF03279 Bacterial lipid A biosynthesis acyltransferase E3397_RS09570 PF00224 Pyruvate kinase, barrel domain E3397_RS09570 PF02887 Pyruvate kinase, alpha/beta domain E3397_RS09575 PF01380 SIS domain E3397_RS09575 PF01418 Helix-turn-helix domain, rpiR family E3397_RS09580 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain E3397_RS09580 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain E3397_RS09585 PF00920 Dehydratase family E3397_RS09590 PF01081 KDPG and KHG aldolase E3397_RS09595 PF02222 ATP-grasp domain E3397_RS09600 PF07130 YebG protein E3397_RS09610 PF04391 Protein of unknown function (DUF533) E3397_RS09615 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E3397_RS09615 PF00326 Prolyl oligopeptidase family E3397_RS09620 PF00929 Exonuclease E3397_RS09625 PF00795 Carbon-nitrogen hydrolase E3397_RS09630 PF06440 DNA polymerase III, theta subunit E3397_RS09635 PF04234 CopC domain E3397_RS09640 PF05425 Copper resistance protein D E3397_RS09645 PF10709 Protein of unknown function (DUF2511) E3397_RS09660 PF12684 PDDEXK-like domain of unknown function (DUF3799) E3397_RS09660 PF06630 Enterobacterial exodeoxyribonuclease VIII E3397_RS09670 PF10721 Protein of unknown function (DUF2514) E3397_RS09710 PF02040 Arsenical pump membrane protein E3397_RS09735 PF00892 EamA-like transporter family E3397_RS09760 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3397_RS09760 PF02824 TGS domain E3397_RS09760 PF03129 Anticodon binding domain E3397_RS09760 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3397_RS09770 PF00583 Acetyltransferase (GNAT) family E3397_RS09780 PF07166 Protein of unknown function (DUF1398) E3397_RS09785 PF05364 Salmonella type III secretion SopE effector N-terminus E3397_RS09785 PF07487 SopE GEF domain E3397_RS09795 PF00149 Calcineurin-like phosphoesterase E3397_RS09800 PF07358 Protein of unknown function (DUF1482) E3397_RS09805 PF07351 Protein of unknown function (DUF1480) E3397_RS09810 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF E3397_RS09810 PF01189 16S rRNA methyltransferase RsmB/F E3397_RS09810 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF E3397_RS09815 PF02470 MlaD protein E3397_RS09820 PF04403 Paraquat-inducible protein A E3397_RS09825 PF13185 GAF domain E3397_RS09830 PF17516 ProQ C-terminal domain E3397_RS09830 PF04352 ProQ/FINO family E3397_RS09835 PF11818 C-terminal domain of tail specific protease (DUF3340) E3397_RS09835 PF00595 PDZ domain E3397_RS09835 PF03572 Peptidase family S41 E3397_RS09835 PF17804 Tail specific protease N-terminal domain E3397_RS09840 PF01435 Peptidase family M48 E3397_RS09845 PF07690 Major Facilitator Superfamily E3397_RS09850 PF01614 Bacterial transcriptional regulator E3397_RS09850 PF09339 IclR helix-turn-helix domain E3397_RS09855 PF13996 YobH-like protein E3397_RS09860 PF13998 MgrB protein E3397_RS09865 PF13974 YebO-like protein E3397_RS09870 PF10736 Protein of unknown function (DUF2627) E3397_RS09875 PF00313 'Cold-shock' DNA-binding domain E3397_RS09880 PF00905 Penicillin binding protein transpeptidase domain E3397_RS09880 PF03717 Penicillin-binding Protein dimerisation domain E3397_RS09885 PF13847 Methyltransferase domain E3397_RS09890 PF02659 Putative manganese efflux pump E3397_RS09895 PF06173 Protein of unknown function (DUF986) E3397_RS09900 PF03613 PTS system mannose/fructose/sorbose family IID component E3397_RS09905 PF03609 PTS system sorbose-specific iic component E3397_RS09910 PF03610 PTS system fructose IIA component E3397_RS09910 PF03830 PTS system sorbose subfamily IIB component E3397_RS09915 PF03741 Integral membrane protein TerC family E3397_RS09915 PF03471 Transporter associated domain E3397_RS09920 PF12792 CSS motif domain associated with EAL E3397_RS09920 PF00563 EAL domain E3397_RS09925 PF03313 Serine dehydratase alpha chain E3397_RS09925 PF03315 Serine dehydratase beta chain E3397_RS09930 PF00293 NUDIX domain E3397_RS09935 PF04715 Anthranilate synthase component I, N terminal region E3397_RS09935 PF00425 chorismate binding enzyme E3397_RS09940 PF03701 Uncharacterised protein family (UPF0181) E3397_RS09945 PF01042 Endoribonuclease L-PSP E3397_RS09950 PF04851 Type III restriction enzyme, res subunit E3397_RS09950 PF13307 Helicase C-terminal domain E3397_RS09955 PF00814 Glycoprotease family E3397_RS09960 PF03843 Outer membrane lipoprotein Slp family E3397_RS09965 PF13193 AMP-binding enzyme C-terminal domain E3397_RS09965 PF00501 AMP-binding enzyme E3397_RS09970 PF01612 3'-5' exonuclease E3397_RS09970 PF00570 HRDC domain E3397_RS09975 PF03776 Septum formation topological specificity factor MinE E3397_RS09980 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3397_RS09985 PF05209 Septum formation inhibitor MinC, N-terminal domain E3397_RS09985 PF03775 Septum formation inhibitor MinC, C-terminal domain E3397_RS09990 PF05166 YcgL domain E3397_RS09995 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3397_RS10000 PF03692 Putative zinc- or iron-chelating domain E3397_RS10010 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system E3397_RS10020 PF02600 Disulfide bond formation protein DsbB E3397_RS10025 PF06450 Bacterial Na+/H+ antiporter B (NhaB) E3397_RS10030 PF00392 Bacterial regulatory proteins, gntR family E3397_RS10030 PF07840 FadR C-terminal domain E3397_RS10035 PF04293 SpoVR like protein E3397_RS10040 PF01266 FAD dependent oxidoreductase E3397_RS10045 PF00842 Alanine racemase, C-terminal domain E3397_RS10045 PF01168 Alanine racemase, N-terminal domain E3397_RS10050 PF02080 TrkA-C domain E3397_RS10050 PF00999 Sodium/hydrogen exchanger family E3397_RS10050 PF03471 Transporter associated domain E3397_RS10055 PF02016 LD-carboxypeptidase N-terminal domain E3397_RS10055 PF17676 LD-carboxypeptidase C-terminal domain E3397_RS10060 PF01464 Transglycosylase SLT domain E3397_RS10065 PF07238 PilZ domain E3397_RS10065 PF07317 Flagellar regulator YcgR E3397_RS10070 PF04226 Transglycosylase associated protein E3397_RS10075 PF01204 Trehalase E3397_RS10080 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E3397_RS10080 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E3397_RS10085 PF08173 Membrane bound YbgT-like protein E3397_RS10090 PF02322 Cytochrome bd terminal oxidase subunit II E3397_RS10095 PF01654 Cytochrome bd terminal oxidase subunit I E3397_RS10100 PF04809 HupH hydrogenase expression protein, C-terminal conserved region E3397_RS10105 PF07449 Hydrogenase-1 expression protein HyaE E3397_RS10110 PF01750 Hydrogenase maturation protease E3397_RS10115 PF01292 Prokaryotic cytochrome b561 E3397_RS10120 PF00374 Nickel-dependent hydrogenase E3397_RS10125 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal E3397_RS10125 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3397_RS10140 PF01926 50S ribosome-binding GTPase E3397_RS10140 PF06071 Protein of unknown function (DUF933) E3397_RS10145 PF01195 Peptidyl-tRNA hydrolase E3397_RS10150 PF10762 Protein of unknown function (DUF2583) E3397_RS10155 PF01740 STAS domain E3397_RS10155 PF00916 Sulfate permease family E3397_RS10160 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E3397_RS10160 PF14572 Phosphoribosyl synthetase-associated domain E3397_RS10165 PF00288 GHMP kinases N terminal domain E3397_RS10165 PF08544 GHMP kinases C terminal E3397_RS10170 PF03550 Outer membrane lipoprotein LolB E3397_RS10175 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain E3397_RS10175 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain E3397_RS10175 PF01488 Shikimate / quinate 5-dehydrogenase E3397_RS10180 PF03462 PCRF domain E3397_RS10180 PF00472 RF-1 domain E3397_RS10185 PF13847 Methyltransferase domain E3397_RS10185 PF17827 PrmC N-terminal domain E3397_RS10190 PF04247 Invasion gene expression up-regulator, SirB E3397_RS10195 PF13369 Transglutaminase-like superfamily E3397_RS10200 PF00793 DAHP synthetase I family E3397_RS10205 PF01699 Sodium/calcium exchanger protein E3397_RS10210 PF06150 ChaB E3397_RS10215 PF02635 DsrE/DsrF-like family E3397_RS10220 PF11924 Inverse autotransporter, beta-domain E3397_RS10225 PF00196 Bacterial regulatory proteins, luxR family E3397_RS10225 PF00072 Response regulator receiver domain E3397_RS10230 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term E3397_RS10230 PF07730 Histidine kinase E3397_RS10230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS10230 PF00672 HAMP domain E3397_RS10235 PF07690 Major Facilitator Superfamily E3397_RS10240 PF00384 Molybdopterin oxidoreductase E3397_RS10240 PF01568 Molydopterin dinucleotide binding domain E3397_RS10240 PF14710 Respiratory nitrate reductase alpha N-terminal E3397_RS10245 PF14711 Respiratory nitrate reductase beta C-terminal E3397_RS10245 PF13247 4Fe-4S dicluster domain E3397_RS10250 PF02613 Nitrate reductase delta subunit E3397_RS10255 PF02665 Nitrate reductase gamma subunit E3397_RS10300 PF00551 Formyl transferase E3397_RS10300 PF01842 ACT domain E3397_RS10305 PF02810 SEC-C motif E3397_RS10310 PF01734 Patatin-like phospholipase E3397_RS10315 PF00072 Response regulator receiver domain E3397_RS10320 PF00483 Nucleotidyl transferase E3397_RS10325 PF00816 H-NS histone family E3397_RS10330 PF00265 Thymidine kinase E3397_RS10335 PF00465 Iron-containing alcohol dehydrogenase E3397_RS10335 PF00171 Aldehyde dehydrogenase family E3397_RS10340 PF01914 MarC family integral membrane protein E3397_RS10345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3397_RS10350 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS10355 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS10355 PF12911 N-terminal TM domain of oligopeptide transport permease C E3397_RS10360 PF00005 ABC transporter E3397_RS10360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3397_RS10365 PF00005 ABC transporter E3397_RS10365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3397_RS10370 PF00520 Ion transport protein E3397_RS10370 PF00027 Cyclic nucleotide-binding domain E3397_RS10375 PF04269 Protein of unknown function, DUF440 E3397_RS10380 PF13396 Phospholipase_D-nuclease N-terminal E3397_RS10380 PF13091 PLD-like domain E3397_RS10390 PF03795 YCII-related domain E3397_RS10395 PF03544 Gram-negative bacterial TonB protein C-terminal E3397_RS10400 PF03061 Thioesterase superfamily E3397_RS10405 PF04279 Intracellular septation protein A E3397_RS10415 PF03692 Putative zinc- or iron-chelating domain E3397_RS10420 PF03922 OmpW family E3397_RS10425 PF05067 Manganese containing catalase E3397_RS10430 PF05974 Domain of unknown function (DUF892) E3397_RS10435 PF05974 Domain of unknown function (DUF892) E3397_RS10440 PF10685 Stress-induced bacterial acidophilic repeat motif E3397_RS10445 PF00290 Tryptophan synthase alpha chain E3397_RS10450 PF00291 Pyridoxal-phosphate dependent enzyme E3397_RS10455 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E3397_RS10455 PF00218 Indole-3-glycerol phosphate synthase E3397_RS10460 PF02885 Glycosyl transferase family, helical bundle domain E3397_RS10460 PF00117 Glutamine amidotransferase class-I E3397_RS10460 PF00591 Glycosyl transferase family, a/b domain E3397_RS10465 PF04715 Anthranilate synthase component I, N terminal region E3397_RS10465 PF00425 chorismate binding enzyme E3397_RS10470 PF08255 Trp-operon Leader Peptide E3397_RS10475 PF02811 PHP domain E3397_RS10480 PF01300 Telomere recombination E3397_RS10485 PF01479 S4 domain E3397_RS10485 PF00849 RNA pseudouridylate synthase E3397_RS10490 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP E3397_RS10495 PF00106 short chain dehydrogenase E3397_RS10500 PF08496 Peptidase family S49 N-terminal E3397_RS10500 PF01343 Peptidase family S49 E3397_RS10505 PF10692 Protein of unknown function (DUF2498) E3397_RS10510 PF01396 Topoisomerase DNA binding C4 zinc finger E3397_RS10510 PF01751 Toprim domain E3397_RS10510 PF01131 DNA topoisomerase E3397_RS10510 PF08272 Topoisomerase I zinc-ribbon-like E3397_RS10520 PF03466 LysR substrate binding domain E3397_RS10520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS10535 PF00694 Aconitase C-terminal domain E3397_RS10535 PF00330 Aconitase family (aconitate hydratase) E3397_RS10540 PF00925 GTP cyclohydrolase II E3397_RS10545 PF01569 PAP2 superfamily E3397_RS10550 PF06305 Lipopolysaccharide assembly protein A domain E3397_RS10555 PF18073 Rubredoxin metal binding domain E3397_RS10560 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E3397_RS10565 PF01253 Translation initiation factor SUI1 E3397_RS10570 PF05433 Glycine zipper 2TM domain E3397_RS10575 PF08220 DeoR-like helix-turn-helix domain E3397_RS10575 PF00455 DeoR C terminal sensor domain E3397_RS10585 PF13426 PAS domain E3397_RS10585 PF00563 EAL domain E3397_RS10585 PF00990 Diguanylate cyclase, GGDEF domain E3397_RS10590 PF00773 RNB domain E3397_RS10590 PF08206 Ribonuclease B OB domain E3397_RS10590 PF00575 S1 RNA binding domain E3397_RS10590 PF17876 Cold shock domain E3397_RS10625 PF00005 ABC transporter E3397_RS10630 PF00005 ABC transporter E3397_RS10630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3397_RS10635 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS10635 PF12911 N-terminal TM domain of oligopeptide transport permease C E3397_RS10640 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS10645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3397_RS10650 PF00158 Sigma-54 interaction domain E3397_RS10650 PF02954 Bacterial regulatory protein, Fis family E3397_RS10655 PF04012 PspA/IM30 family E3397_RS10660 PF06667 Phage shock protein B E3397_RS10665 PF04024 PspC domain E3397_RS10670 PF09584 Phage shock protein PspD (Phageshock_PspD) E3397_RS10675 PF00581 Rhodanese-like domain E3397_RS10680 PF04317 YcjX-like family, DUF463 E3397_RS10685 PF05128 Domain of unknown function (DUF697) E3397_RS10690 PF00158 Sigma-54 interaction domain E3397_RS10690 PF18024 Helix-turn-helix domain E3397_RS10695 PF08534 Redoxin E3397_RS10700 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3397_RS10700 PF13378 Enolase C-terminal domain-like E3397_RS10705 PF00246 Zinc carboxypeptidase E3397_RS10710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3397_RS10720 PF03466 LysR substrate binding domain E3397_RS10720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS10725 PF00248 Aldo/keto reductase family E3397_RS10735 PF00440 Bacterial regulatory proteins, tetR family E3397_RS10750 PF06445 GyrI-like small molecule binding domain E3397_RS10750 PF12833 Helix-turn-helix domain E3397_RS10770 PF08534 Redoxin E3397_RS10790 PF00924 Mechanosensitive ion channel E3397_RS10795 PF10749 Protein of unknown function (DUF2534) E3397_RS10800 PF00582 Universal stress protein family E3397_RS10805 PF00027 Cyclic nucleotide-binding domain E3397_RS10805 PF13545 Crp-like helix-turn-helix domain E3397_RS10810 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E3397_RS10810 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3397_RS10815 PF01713 Smr domain E3397_RS10820 PF02203 Tar ligand binding domain homologue E3397_RS10820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3397_RS10820 PF00672 HAMP domain E3397_RS10825 PF01544 CorA-like Mg2+ transporter protein E3397_RS10835 PF03880 DbpA RNA binding domain E3397_RS10835 PF00270 DEAD/DEAH box helicase E3397_RS10835 PF00271 Helicase conserved C-terminal domain E3397_RS10840 PF01171 PP-loop family E3397_RS10850 PF00893 Small Multidrug Resistance protein E3397_RS10855 PF00582 Universal stress protein family E3397_RS10860 PF10371 Domain of unknown function E3397_RS10860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3397_RS10860 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase E3397_RS10860 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II E3397_RS10860 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg E3397_RS10870 PF03891 Domain of unknown function (DUF333) E3397_RS10875 PF03724 META domain E3397_RS10880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3397_RS10880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3397_RS10885 PF11739 Dicarboxylate transport E3397_RS10890 PF13617 YnbE-like lipoprotein E3397_RS10895 PF07027 Protein of unknown function (DUF1318) E3397_RS10905 PF02525 Flavodoxin-like fold E3397_RS10910 PF00270 DEAD/DEAH box helicase E3397_RS10910 PF11898 Domain of unknown function (DUF3418) E3397_RS10910 PF00271 Helicase conserved C-terminal domain E3397_RS10910 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold E3397_RS10910 PF04408 Helicase associated domain (HA2) E3397_RS10915 PF02698 DUF218 domain E3397_RS10920 PF01292 Prokaryotic cytochrome b561 E3397_RS10925 PF08242 Methyltransferase domain E3397_RS10935 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS10940 PF00005 ABC transporter E3397_RS10945 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS10950 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3397_RS10960 PF00657 GDSL-like Lipase/Acylhydrolase E3397_RS10960 PF06767 Sif protein E3397_RS10975 PF02583 Metal-sensitive transcriptional repressor E3397_RS10980 PF00107 Zinc-binding dehydrogenase E3397_RS10980 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS10985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3397_RS10985 PF00672 HAMP domain E3397_RS10985 PF02203 Tar ligand binding domain homologue E3397_RS10990 PF03466 LysR substrate binding domain E3397_RS10990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS10995 PF07063 Domain of unknown function (DUF1338) E3397_RS11000 PF00135 Carboxylesterase family E3397_RS11005 PF04349 Periplasmic glucan biosynthesis protein, MdoG E3397_RS11010 PF04264 YceI-like domain E3397_RS11015 PF01070 FMN-dependent dehydrogenase E3397_RS11020 PF00583 Acetyltransferase (GNAT) family E3397_RS11025 PF08220 DeoR-like helix-turn-helix domain E3397_RS11025 PF00455 DeoR C terminal sensor domain E3397_RS11030 PF00834 Ribulose-phosphate 3 epimerase family E3397_RS11035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3397_RS11040 PF03437 BtpA family E3397_RS11045 PF03611 PTS system sugar-specific permease component E3397_RS11050 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3397_RS11055 PF05343 M42 glutamyl aminopeptidase E3397_RS11060 PF13302 Acetyltransferase (GNAT) domain E3397_RS11065 PF18836 Beta solenoid repeat from YDCK E3397_RS11070 PF03595 Voltage-dependent anion channel E3397_RS11075 PF03848 Tellurite resistance protein TehB E3397_RS11080 PF11769 Protein of unknown function (DUF3313) E3397_RS11085 PF03594 Benzoate membrane transport protein E3397_RS11090 PF01381 Helix-turn-helix E3397_RS11090 PF07883 Cupin domain E3397_RS11095 PF12392 Collagenase E3397_RS11095 PF01136 Peptidase family U32 E3397_RS11100 PF10829 Protein of unknown function (DUF2554) E3397_RS11105 PF06767 Sif protein E3397_RS11120 PF01427 D-ala-D-ala dipeptidase E3397_RS11125 PF00392 Bacterial regulatory proteins, gntR family E3397_RS11125 PF00155 Aminotransferase class I and II E3397_RS11130 PF00171 Aldehyde dehydrogenase family E3397_RS11140 PF10753 Toxin GhoT_OrtT E3397_RS11160 PF10735 Protein of unknown function (DUF2526) E3397_RS11165 PF04657 Putative inner membrane exporter, YdcZ E3397_RS11175 PF16884 N-terminal domain of oxidoreductase E3397_RS11175 PF00107 Zinc-binding dehydrogenase E3397_RS11180 PF00392 Bacterial regulatory proteins, gntR family E3397_RS11180 PF07729 FCD domain E3397_RS11185 PF00593 TonB dependent receptor E3397_RS11185 PF07715 TonB-dependent Receptor Plug Domain E3397_RS11195 PF06004 Bacterial protein of unknown function (DUF903) E3397_RS11200 PF00324 Amino acid permease E3397_RS11215 PF00797 N-acetyltransferase E3397_RS11220 PF02567 Phenazine biosynthesis-like protein E3397_RS11225 PF02665 Nitrate reductase gamma subunit E3397_RS11230 PF02613 Nitrate reductase delta subunit E3397_RS11235 PF14711 Respiratory nitrate reductase beta C-terminal E3397_RS11235 PF13247 4Fe-4S dicluster domain E3397_RS11240 PF14710 Respiratory nitrate reductase alpha N-terminal E3397_RS11240 PF01568 Molydopterin dinucleotide binding domain E3397_RS11240 PF00384 Molybdopterin oxidoreductase E3397_RS11245 PF07690 Major Facilitator Superfamily E3397_RS11250 PF00440 Bacterial regulatory proteins, tetR family E3397_RS11255 PF07690 Major Facilitator Superfamily E3397_RS11265 PF00267 Gram-negative porin E3397_RS11270 PF00892 EamA-like transporter family E3397_RS11280 PF13247 4Fe-4S dicluster domain E3397_RS11280 PF09163 Formate dehydrogenase N, transmembrane E3397_RS11280 PF12800 4Fe-4S binding domain E3397_RS11285 PF01292 Prokaryotic cytochrome b561 E3397_RS11290 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS11290 PF00107 Zinc-binding dehydrogenase E3397_RS11295 PF03949 Malic enzyme, NAD binding domain E3397_RS11295 PF00390 Malic enzyme, N-terminal domain E3397_RS11300 PF08136 30S ribosomal protein subunit S22 family E3397_RS11305 PF10684 Putative biofilm-dependent modulation protein E3397_RS11310 PF02566 OsmC-like protein E3397_RS11315 PF06411 HdeA/HdeB family E3397_RS11325 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E3397_RS11325 PF00128 Alpha amylase, catalytic domain E3397_RS11325 PF11941 Domain of unknown function (DUF3459) E3397_RS11330 PF00128 Alpha amylase, catalytic domain E3397_RS11335 PF00128 Alpha amylase, catalytic domain E3397_RS11335 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E3397_RS11340 PF00155 Aminotransferase class I and II E3397_RS11345 PF03553 Na+/H+ antiporter family E3397_RS11350 PF00356 Bacterial regulatory proteins, lacI family E3397_RS11395 PF01042 Endoribonuclease L-PSP E3397_RS11400 PF02547 Queuosine biosynthesis protein E3397_RS11410 PF01494 FAD binding domain E3397_RS11415 PF07690 Major Facilitator Superfamily E3397_RS11425 PF07690 Major Facilitator Superfamily E3397_RS11430 PF00107 Zinc-binding dehydrogenase E3397_RS11430 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS11435 PF00392 Bacterial regulatory proteins, gntR family E3397_RS11435 PF07729 FCD domain E3397_RS11445 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal E3397_RS11445 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3397_RS11450 PF00374 Nickel-dependent hydrogenase E3397_RS11455 PF01292 Prokaryotic cytochrome b561 E3397_RS11460 PF01750 Hydrogenase maturation protease E3397_RS11465 PF01455 HupF/HypC family E3397_RS11475 PF04809 HupH hydrogenase expression protein, C-terminal conserved region E3397_RS11485 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA E3397_RS11490 PF00267 Gram-negative porin E3397_RS11500 PF01062 Bestrophin, RFP-TM, chloride channel E3397_RS11505 PF13811 Domain of unknown function (DUF4186) E3397_RS11510 PF04960 Glutaminase E3397_RS11515 PF00171 Aldehyde dehydrogenase family E3397_RS11520 PF03466 LysR substrate binding domain E3397_RS11520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS11525 PF07690 Major Facilitator Superfamily E3397_RS11530 PF01914 MarC family integral membrane protein E3397_RS11535 PF01047 MarR family E3397_RS11540 PF12833 Helix-turn-helix domain E3397_RS11545 PF13999 MarB protein E3397_RS11550 PF00892 EamA-like transporter family E3397_RS11555 PF07690 Major Facilitator Superfamily E3397_RS11565 PF04076 Bacterial OB fold (BOF) protein E3397_RS11570 PF02464 Competence-damaged protein E3397_RS11575 PF10685 Stress-induced bacterial acidophilic repeat motif E3397_RS11585 PF01432 Peptidase family M3 E3397_RS11590 PF00106 short chain dehydrogenase E3397_RS11595 PF00392 Bacterial regulatory proteins, gntR family E3397_RS11595 PF07729 FCD domain E3397_RS11600 PF14001 YdfZ protein E3397_RS11605 PF08125 Mannitol dehydrogenase C-terminal domain E3397_RS11605 PF01232 Mannitol dehydrogenase Rossmann domain E3397_RS11610 PF00083 Sugar (and other) transporter E3397_RS11610 PF07690 Major Facilitator Superfamily E3397_RS11615 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS11615 PF00107 Zinc-binding dehydrogenase E3397_RS11620 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain E3397_RS11620 PF13378 Enolase C-terminal domain-like E3397_RS11625 PF02694 Uncharacterised BCR, YnfA/UPF0060 family E3397_RS11630 PF06932 Protein of unknown function (DUF1283) E3397_RS11635 PF13302 Acetyltransferase (GNAT) domain E3397_RS11640 PF06788 Uncharacterised protein family (UPF0257) E3397_RS11645 PF06649 Protein of unknown function (DUF1161) E3397_RS11650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3397_RS11650 PF00384 Molybdopterin oxidoreductase E3397_RS11650 PF01568 Molydopterin dinucleotide binding domain E3397_RS11655 PF00384 Molybdopterin oxidoreductase E3397_RS11655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3397_RS11655 PF01568 Molydopterin dinucleotide binding domain E3397_RS11660 PF13247 4Fe-4S dicluster domain E3397_RS11660 PF12800 4Fe-4S binding domain E3397_RS11665 PF04976 DMSO reductase anchor subunit (DmsC) E3397_RS11670 PF02613 Nitrate reductase delta subunit E3397_RS11675 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS11680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system E3397_RS11685 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS11690 PF00005 ABC transporter E3397_RS11690 PF00571 CBS domain E3397_RS11695 PF00654 Voltage gated chloride channel E3397_RS11705 PF00480 ROK family E3397_RS11710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS11710 PF03466 LysR substrate binding domain E3397_RS11715 PF07690 Major Facilitator Superfamily E3397_RS11725 PF00089 Trypsin E3397_RS11730 PF00893 Small Multidrug Resistance protein E3397_RS11735 PF00893 Small Multidrug Resistance protein E3397_RS11745 PF01594 AI-2E family transporter E3397_RS11750 PF02233 NAD(P) transhydrogenase beta subunit E3397_RS11755 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch E3397_RS11755 PF01262 Alanine dehydrogenase/PNT, C-terminal domain E3397_RS11755 PF05222 Alanine dehydrogenase/PNT, N-terminal domain E3397_RS11760 PF07338 Protein of unknown function (DUF1471) E3397_RS11765 PF13520 Amino acid permease E3397_RS11770 PF06942 GlpM protein E3397_RS11775 PF00072 Response regulator receiver domain E3397_RS11775 PF00486 Transcriptional regulatory protein, C terminal E3397_RS11785 PF00267 Gram-negative porin E3397_RS11790 PF13382 Adenine deaminase C-terminal domain E3397_RS11790 PF01979 Amidohydrolase family E3397_RS11795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS11795 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS11795 PF00672 HAMP domain E3397_RS11800 PF05472 DNA replication terminus site-binding protein (Ter protein) E3397_RS11805 PF00206 Lyase E3397_RS11805 PF10415 Fumarase C C-terminus E3397_RS11810 PF05683 Fumarase C-terminus E3397_RS11810 PF05681 Fumarate hydratase (Fumerase) E3397_RS11815 PF01238 Phosphomannose isomerase type I E3397_RS11820 PF06097 Bacterial protein of unknown function (DUF945) E3397_RS11830 PF00155 Aminotransferase class I and II E3397_RS11835 PF00962 Adenosine/AMP deaminase E3397_RS11840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3397_RS11840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3397_RS11850 PF05321 Haemolysin expression modulating protein E3397_RS11855 PF10754 Protein of unknown function (DUF2569) E3397_RS11860 PF02508 Rnf-Nqr subunit, membrane protein E3397_RS11865 PF04060 Putative Fe-S cluster E3397_RS11870 PF13375 RnfC Barrel sandwich hybrid domain E3397_RS11870 PF12838 4Fe-4S dicluster domain E3397_RS11870 PF10531 SLBB domain E3397_RS11870 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E3397_RS11875 PF03116 NQR2, RnfD, RnfE family E3397_RS11880 PF04205 FMN-binding domain E3397_RS11885 PF02508 Rnf-Nqr subunit, membrane protein E3397_RS11890 PF00730 HhH-GPD superfamily base excision DNA repair protein E3397_RS11890 PF00633 Helix-hairpin-helix motif E3397_RS11890 PF10576 Iron-sulfur binding domain of endonuclease III E3397_RS11895 PF00854 POT family E3397_RS11900 PF02798 Glutathione S-transferase, N-terminal domain E3397_RS11900 PF00043 Glutathione S-transferase, C-terminal domain E3397_RS11905 PF08543 Phosphomethylpyrimidine kinase E3397_RS11910 PF01479 S4 domain E3397_RS11910 PF00579 tRNA synthetases class I (W and Y) E3397_RS11915 PF01243 Pyridoxamine 5'-phosphate oxidase E3397_RS11915 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region E3397_RS11920 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme E3397_RS11925 PF03702 Anhydro-N-acetylmuramic acid kinase E3397_RS11930 PF05433 Glycine zipper 2TM domain E3397_RS11935 PF01047 MarR family E3397_RS11940 PF07869 Protein of unknown function (DUF1656) E3397_RS11945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3397_RS11945 PF00529 HlyD membrane-fusion protein of T1SS E3397_RS11950 PF04632 Fusaric acid resistance protein family E3397_RS11955 PF00080 Copper/zinc superoxide dismutase (SODC) E3397_RS11960 PF00248 Aldo/keto reductase family E3397_RS11965 PF06945 Protein of unknown function (DUF1289) E3397_RS11970 PF00440 Bacterial regulatory proteins, tetR family E3397_RS11970 PF16925 Tetracyclin repressor-like, C-terminal domain E3397_RS11975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3397_RS11980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3397_RS11985 PF00929 Exonuclease E3397_RS11995 PF00462 Glutaredoxin E3397_RS12000 PF00877 NlpC/P60 family E3397_RS12005 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3397_RS12005 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3397_RS12015 PF00356 Bacterial regulatory proteins, lacI family E3397_RS12020 PF03466 LysR substrate binding domain E3397_RS12020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS12025 PF07690 Major Facilitator Superfamily E3397_RS12035 PF00677 Lumazine binding domain E3397_RS12040 PF01554 MatE E3397_RS12055 PF01312 FlhB HrpN YscU SpaS Family E3397_RS12060 PF01311 Bacterial export proteins, family 1 E3397_RS12065 PF01313 Bacterial export proteins, family 3 E3397_RS12070 PF00813 FliP family E3397_RS12075 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3397_RS12090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3397_RS12090 PF18269 T3SS EscN ATPase C-terminal domain E3397_RS12095 PF00771 FHIPEP family E3397_RS12105 PF07201 HrpJ-like domain E3397_RS12120 PF01514 Secretory protein of YscJ/FliF family E3397_RS12160 PF05802 Enterobacterial EspB protein E3397_RS12165 PF04888 Secretion system effector C (SseC) like family E3397_RS12175 PF03433 EspA-like secreted protein E3397_RS12195 PF03958 Bacterial type II/III secretion system short domain E3397_RS12195 PF00263 Bacterial type II and III secretion system protein E3397_RS12205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS12205 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS12205 PF00672 HAMP domain E3397_RS12205 PF01627 Hpt domain E3397_RS12205 PF00072 Response regulator receiver domain E3397_RS12205 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E3397_RS12210 PF00072 Response regulator receiver domain E3397_RS12210 PF00196 Bacterial regulatory proteins, luxR family E3397_RS12215 PF13411 MerR HTH family regulatory protein E3397_RS12220 PF08349 Protein of unknown function (DUF1722) E3397_RS12225 PF10965 Protein of unknown function (DUF2767) E3397_RS12230 PF00072 Response regulator receiver domain E3397_RS12230 PF00196 Bacterial regulatory proteins, luxR family E3397_RS12235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS12235 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS12240 PF13247 4Fe-4S dicluster domain E3397_RS12245 PF03916 Polysulphide reductase, NrfD E3397_RS12250 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3397_RS12250 PF00384 Molybdopterin oxidoreductase E3397_RS12250 PF01568 Molydopterin dinucleotide binding domain E3397_RS12255 PF00294 pfkB family carbohydrate kinase E3397_RS12265 PF00561 alpha/beta hydrolase fold E3397_RS12270 PF00324 Amino acid permease E3397_RS12275 PF02887 Pyruvate kinase, alpha/beta domain E3397_RS12275 PF00224 Pyruvate kinase, barrel domain E3397_RS12280 PF04728 Lipoprotein leucine-zipper E3397_RS12285 PF04728 Lipoprotein leucine-zipper E3397_RS12290 PF04728 Lipoprotein leucine-zipper E3397_RS12295 PF17969 L,D-transpeptidase C-terminal domain E3397_RS12295 PF01476 LysM domain E3397_RS12295 PF03734 L,D-transpeptidase catalytic domain E3397_RS12300 PF02657 Fe-S metabolism associated domain E3397_RS12305 PF00266 Aminotransferase class-V E3397_RS12310 PF01458 Uncharacterized protein family (UPF0051) E3397_RS12315 PF00005 ABC transporter E3397_RS12320 PF01458 Uncharacterized protein family (UPF0051) E3397_RS12325 PF01521 Iron-sulphur cluster biosynthesis E3397_RS12330 PF00375 Sodium:dicarboxylate symporter family E3397_RS12335 PF15930 Domain of unknown function E3397_RS12340 PF03061 Thioesterase superfamily E3397_RS12345 PF02913 FAD linked oxidases, C-terminal domain E3397_RS12345 PF01565 FAD binding domain E3397_RS12345 PF13183 4Fe-4S dicluster domain E3397_RS12350 PF01594 AI-2E family transporter E3397_RS12360 PF08965 Domain of unknown function (DUF1870) E3397_RS12365 PF07690 Major Facilitator Superfamily E3397_RS12370 PF07690 Major Facilitator Superfamily E3397_RS12375 PF08501 Shikimate dehydrogenase substrate binding domain E3397_RS12375 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E3397_RS12380 PF01487 Type I 3-dehydroquinase E3397_RS12385 PF01144 Coenzyme A transferase E3397_RS12390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3397_RS12390 PF02770 Acyl-CoA dehydrogenase, middle domain E3397_RS12390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3397_RS12395 PF02311 AraC-like ligand binding domain E3397_RS12395 PF12833 Helix-turn-helix domain E3397_RS12400 PF01012 Electron transfer flavoprotein domain E3397_RS12405 PF00766 Electron transfer flavoprotein FAD-binding domain E3397_RS12405 PF01012 Electron transfer flavoprotein domain E3397_RS12410 PF01494 FAD binding domain E3397_RS12420 PF13193 AMP-binding enzyme C-terminal domain E3397_RS12420 PF00501 AMP-binding enzyme E3397_RS12425 PF00391 PEP-utilising enzyme, mobile domain E3397_RS12425 PF02896 PEP-utilising enzyme, TIM barrel domain E3397_RS12425 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain E3397_RS12430 PF03618 Kinase/pyrophosphorylase E3397_RS12435 PF00793 DAHP synthetase I family E3397_RS12440 PF10636 Hemin uptake protein hemP E3397_RS12445 PF02696 Uncharacterized ACR, YdiU/UPF0061 family E3397_RS12450 PF00563 EAL domain E3397_RS12455 PF00877 NlpC/P60 family E3397_RS12460 PF00005 ABC transporter E3397_RS12465 PF00255 Glutathione peroxidase E3397_RS12470 PF01032 FecCD transport family E3397_RS12475 PF00216 Bacterial DNA-binding protein E3397_RS12480 PF03484 tRNA synthetase B5 domain E3397_RS12480 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E3397_RS12480 PF01588 Putative tRNA binding domain E3397_RS12480 PF03147 Ferredoxin-fold anticodon binding domain E3397_RS12480 PF03483 B3/4 domain E3397_RS12485 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain E3397_RS12485 PF01409 tRNA synthetases class II core domain (F) E3397_RS12495 PF00453 Ribosomal protein L20 E3397_RS12500 PF01632 Ribosomal protein L35 E3397_RS12505 PF05198 Translation initiation factor IF-3, N-terminal domain E3397_RS12505 PF00707 Translation initiation factor IF-3, C-terminal domain E3397_RS12510 PF02824 TGS domain E3397_RS12510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3397_RS12510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3397_RS12510 PF03129 Anticodon binding domain E3397_RS12515 PF01223 DNA/RNA non-specific endonuclease E3397_RS12530 PF04338 Protein of unknown function, DUF481 E3397_RS12535 PF00294 pfkB family carbohydrate kinase E3397_RS12540 PF11080 Endoribonuclease GhoS E3397_RS12545 PF03881 Fructosamine kinase E3397_RS12550 PF14002 YniB-like protein E3397_RS12555 PF13419 Haloacid dehalogenase-like hydrolase E3397_RS12560 PF04307 LexA-binding, inner membrane-associated putative hydrolase E3397_RS12565 PF00375 Sodium:dicarboxylate symporter family E3397_RS12570 PF10729 Cell division activator CedA E3397_RS12575 PF06628 Catalase-related immune-responsive E3397_RS12575 PF18011 C-terminal domain found in long catalases E3397_RS12575 PF00199 Catalase E3397_RS12580 PF04794 YdjC-like protein E3397_RS12585 PF02056 Family 4 glycosyl hydrolase E3397_RS12585 PF11975 Family 4 glycosyl hydrolase C-terminal domain E3397_RS12590 PF12833 Helix-turn-helix domain E3397_RS12590 PF07883 Cupin domain E3397_RS12595 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit E3397_RS12600 PF02378 Phosphotransferase system, EIIC E3397_RS12605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3397_RS12615 PF04355 SmpA / OmlA family E3397_RS12620 PF02540 NAD synthase E3397_RS12630 PF07813 LTXXQ motif family protein E3397_RS12635 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family E3397_RS12640 PF04996 Succinylarginine dihydrolase E3397_RS12645 PF00171 Aldehyde dehydrogenase family E3397_RS12650 PF04958 Arginine N-succinyltransferase beta subunit E3397_RS12655 PF00202 Aminotransferase class-III E3397_RS12660 PF03372 Endonuclease/Exonuclease/phosphatase family E3397_RS12665 PF00293 NUDIX domain E3397_RS12670 PF07383 Protein of unknown function (DUF1496) E3397_RS12675 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E3397_RS12675 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E3397_RS12680 PF01131 DNA topoisomerase E3397_RS12680 PF01751 Toprim domain E3397_RS12685 PF00586 AIR synthase related protein, N-terminal domain E3397_RS12685 PF02769 AIR synthase related protein, C-terminal domain E3397_RS12690 PF00881 Nitroreductase family E3397_RS12695 PF01343 Peptidase family S49 E3397_RS12700 PF00710 Asparaginase, N-terminal E3397_RS12700 PF17763 Glutaminase/Asparaginase C-terminal domain E3397_RS12705 PF00857 Isochorismatase family E3397_RS12710 PF00083 Sugar (and other) transporter E3397_RS12715 PF00455 DeoR C terminal sensor domain E3397_RS12715 PF08220 DeoR-like helix-turn-helix domain E3397_RS12720 PF00248 Aldo/keto reductase family E3397_RS12725 PF00294 pfkB family carbohydrate kinase E3397_RS12730 PF01116 Fructose-bisphosphate aldolase class-II E3397_RS12735 PF00107 Zinc-binding dehydrogenase E3397_RS12735 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS12740 PF00083 Sugar (and other) transporter E3397_RS12745 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS12745 PF00107 Zinc-binding dehydrogenase E3397_RS12750 PF07023 Protein of unknown function (DUF1315) E3397_RS12755 PF01641 SelR domain E3397_RS12760 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3397_RS12760 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3397_RS12765 PF01263 Aldose 1-epimerase E3397_RS12770 PF00248 Aldo/keto reductase family E3397_RS12775 PF13186 Iron-sulfur cluster-binding domain E3397_RS12775 PF04055 Radical SAM superfamily E3397_RS12780 PF06629 MltA-interacting protein MipA E3397_RS12785 PF08298 PrkA AAA domain E3397_RS12785 PF06798 PrkA serine protein kinase C-terminal domain E3397_RS12790 PF04285 Protein of unknown function (DUF444) E3397_RS12800 PF17155 Gammaproteobacterial periplasmic sensor domain E3397_RS12800 PF00990 Diguanylate cyclase, GGDEF domain E3397_RS12805 PF04073 Aminoacyl-tRNA editing domain E3397_RS12815 PF04284 Protein of unknown function (DUF441) E3397_RS12820 PF12833 Helix-turn-helix domain E3397_RS12820 PF02311 AraC-like ligand binding domain E3397_RS12825 PF07690 Major Facilitator Superfamily E3397_RS12830 PF04343 Protein of unknown function, DUF488 E3397_RS12840 PF03891 Domain of unknown function (DUF333) E3397_RS12850 PF04226 Transglycosylase associated protein E3397_RS12865 PF08956 Domain of unknown function (DUF1869) E3397_RS12870 PF09313 Domain of unknown function (DUF1971) E3397_RS12875 PF01810 LysE type translocator E3397_RS12880 PF01817 Chorismate mutase type II E3397_RS12895 PF09278 MerR, DNA binding E3397_RS12895 PF00376 MerR family regulatory protein E3397_RS12905 PF13427 Domain of unknown function (DUF4111) E3397_RS12905 PF01909 Nucleotidyltransferase domain E3397_RS12910 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment E3397_RS12925 PF00924 Mechanosensitive ion channel E3397_RS12930 PF00005 ABC transporter E3397_RS12935 PF00005 ABC transporter E3397_RS12940 PF12911 N-terminal TM domain of oligopeptide transport permease C E3397_RS12940 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS12945 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS12950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3397_RS12960 PF01292 Prokaryotic cytochrome b561 E3397_RS12975 PF00011 Hsp20/alpha crystallin family E3397_RS13000 PF06316 Enterobacterial Ail/Lom protein E3397_RS13015 PF00313 'Cold-shock' DNA-binding domain E3397_RS13020 PF00652 Ricin-type beta-trefoil lectin domain E3397_RS13025 PF06183 DinI-like family E3397_RS13045 PF00180 Isocitrate/isopropylmalate dehydrogenase E3397_RS13050 PF00849 RNA pseudouridylate synthase E3397_RS13060 PF00293 NUDIX domain E3397_RS13070 PF04356 Protein of unknown function (DUF489) E3397_RS13075 PF00206 Lyase E3397_RS13075 PF08328 Adenylosuccinate lyase C-terminal E3397_RS13080 PF00486 Transcriptional regulatory protein, C terminal E3397_RS13080 PF00072 Response regulator receiver domain E3397_RS13085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS13085 PF08918 PhoQ Sensor E3397_RS13090 PF08007 Cupin superfamily protein E3397_RS13100 PF01546 Peptidase family M20/M25/M40 E3397_RS13100 PF07687 Peptidase dimerisation domain E3397_RS13105 PF08402 TOBE domain E3397_RS13105 PF00005 ABC transporter E3397_RS13110 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS13115 PF06767 Sif protein E3397_RS13120 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS13125 PF13416 Bacterial extracellular solute-binding protein E3397_RS13130 PF02146 Sir2 family E3397_RS13135 PF00480 ROK family E3397_RS13140 PF02687 FtsX-like permease family E3397_RS13140 PF12704 MacB-like periplasmic core domain E3397_RS13145 PF00005 ABC transporter E3397_RS13150 PF02687 FtsX-like permease family E3397_RS13150 PF12704 MacB-like periplasmic core domain E3397_RS13155 PF02559 CarD-like/TRCF domain E3397_RS13155 PF00271 Helicase conserved C-terminal domain E3397_RS13155 PF00270 DEAD/DEAH box helicase E3397_RS13155 PF17757 UvrB interaction domain E3397_RS13155 PF03461 TRCF domain E3397_RS13160 PF17969 L,D-transpeptidase C-terminal domain E3397_RS13160 PF01476 LysM domain E3397_RS13160 PF03734 L,D-transpeptidase catalytic domain E3397_RS13165 PF07338 Protein of unknown function (DUF1471) E3397_RS13170 PF00440 Bacterial regulatory proteins, tetR family E3397_RS13175 PF05433 Glycine zipper 2TM domain E3397_RS13180 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS13185 PF05728 Uncharacterised protein family (UPF0227) E3397_RS13190 PF00933 Glycosyl hydrolase family 3 N terminal domain E3397_RS13195 PF01636 Phosphotransferase enzyme family E3397_RS13200 PF13036 Peptidoglycan-synthase activator LpoB E3397_RS13205 PF07233 Protein of unknown function (DUF1425) E3397_RS13210 PF01230 HIT domain E3397_RS13215 PF07715 TonB-dependent Receptor Plug Domain E3397_RS13215 PF00593 TonB dependent receptor E3397_RS13220 PF02378 Phosphotransferase system, EIIC E3397_RS13220 PF00367 phosphotransferase system, EIIB E3397_RS13225 PF01026 TatD related DNase E3397_RS13230 PF09115 DNA polymerase III, delta subunit, C terminal E3397_RS13235 PF02223 Thymidylate kinase E3397_RS13240 PF02618 YceG-like family E3397_RS13245 PF01063 Amino-transferase class IV E3397_RS13250 PF02801 Beta-ketoacyl synthase, C-terminal domain E3397_RS13250 PF00109 Beta-ketoacyl synthase, N-terminal domain E3397_RS13255 PF00550 Phosphopantetheine attachment site E3397_RS13265 PF00698 Acyl transferase domain E3397_RS13270 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E3397_RS13270 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E3397_RS13275 PF02504 Fatty acid synthesis protein E3397_RS13280 PF01783 Ribosomal L32p protein family E3397_RS13285 PF02620 Large ribosomal RNA subunit accumulation protein YceD E3397_RS13290 PF02545 Maf-like protein E3397_RS13305 PF00849 RNA pseudouridylate synthase E3397_RS13305 PF01479 S4 domain E3397_RS13315 PF12111 Polyribonucleotide phosphorylase C terminal E3397_RS13315 PF10150 Ribonuclease E/G family E3397_RS13315 PF00575 S1 RNA binding domain E3397_RS13320 PF00669 Bacterial flagellin N-terminal helical region E3397_RS13325 PF00460 Flagella basal body rod protein E3397_RS13325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3397_RS13330 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase E3397_RS13330 PF10135 Rod binding protein E3397_RS13335 PF02119 Flagellar P-ring protein E3397_RS13340 PF02107 Flagellar L-ring protein E3397_RS13345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3397_RS13345 PF00460 Flagella basal body rod protein E3397_RS13350 PF00460 Flagella basal body rod protein E3397_RS13350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3397_RS13355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3397_RS13355 PF07559 Flagellar basal body protein FlaE E3397_RS13355 PF00460 Flagella basal body rod protein E3397_RS13360 PF13860 FlgD Ig-like domain E3397_RS13360 PF13861 FlgD Tudor-like domain E3397_RS13360 PF03963 Flagellar hook capping protein - N-terminal region E3397_RS13365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3397_RS13365 PF00460 Flagella basal body rod protein E3397_RS13370 PF00460 Flagella basal body rod protein E3397_RS13375 PF13144 Chaperone for flagella basal body P-ring formation E3397_RS13380 PF04316 Anti-sigma-28 factor, FlgM E3397_RS13385 PF05130 FlgN protein E3397_RS13390 PF03023 Lipid II flippase MurJ E3397_RS13395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3397_RS13400 PF04337 Protein of unknown function, DUF480 E3397_RS13405 PF13302 Acetyltransferase (GNAT) domain E3397_RS13410 PF07690 Major Facilitator Superfamily E3397_RS13415 PF04399 Glutaredoxin 2, C terminal domain E3397_RS13415 PF13417 Glutathione S-transferase, N-terminal domain E3397_RS13420 PF07273 Protein of unknown function (DUF1439) E3397_RS13425 PF01979 Amidohydrolase family E3397_RS13430 PF06183 DinI-like family E3397_RS13435 PF13991 BssS protein family E3397_RS13440 PF01266 FAD dependent oxidoreductase E3397_RS13445 PF10968 Protein of unknown function (DUF2770) E3397_RS13450 PF01292 Prokaryotic cytochrome b561 E3397_RS13455 PF04264 YceI-like domain E3397_RS13460 PF17773 UPF0176 acylphosphatase like domain E3397_RS13460 PF12368 Rhodanase C-terminal E3397_RS13460 PF00581 Rhodanese-like domain E3397_RS13465 PF03279 Bacterial lipid A biosynthesis acyltransferase E3397_RS13470 PF07690 Major Facilitator Superfamily E3397_RS13475 PF13984 MsyB protein E3397_RS13480 PF07119 Protein of unknown function (DUF1375) E3397_RS13485 PF00535 Glycosyl transferase family 2 E3397_RS13490 PF04349 Periplasmic glucan biosynthesis protein, MdoG E3397_RS13500 PF01757 Acyltransferase family E3397_RS13505 PF13091 PLD-like domain E3397_RS13510 PF01661 Macro domain E3397_RS13520 PF10610 Thin aggregative fimbriae synthesis protein E3397_RS13525 PF07012 Curlin associated repeat E3397_RS13530 PF07012 Curlin associated repeat E3397_RS13535 PF00196 Bacterial regulatory proteins, luxR family E3397_RS13540 PF10627 Curli assembly protein CsgE E3397_RS13545 PF10614 Type VIII secretion system (T8SS), CsgF protein E3397_RS13550 PF03783 Curli production assembly/transport component CsgG E3397_RS13555 PF06496 Protein of unknown function (DUF1097) E3397_RS13560 PF02613 Nitrate reductase delta subunit E3397_RS13565 PF02811 PHP domain E3397_RS13570 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3397_RS13585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3397_RS13585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3397_RS13590 PF07690 Major Facilitator Superfamily E3397_RS13595 PF06178 Oligogalacturonate-specific porin protein (KdgM) E3397_RS13600 PF01344 Kelch motif E3397_RS13605 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase E3397_RS13610 PF00474 Sodium:solute symporter family E3397_RS13615 PF01418 Helix-turn-helix domain, rpiR family E3397_RS13615 PF01380 SIS domain E3397_RS13620 PF02562 PhoH-like protein E3397_RS13625 PF00474 Sodium:solute symporter family E3397_RS13630 PF18327 Proline utilization A proline dehydrogenase N-terminal domain E3397_RS13630 PF14850 DNA-binding domain of Proline dehydrogenase E3397_RS13630 PF01619 Proline dehydrogenase E3397_RS13630 PF00171 Aldehyde dehydrogenase family E3397_RS13640 PF00440 Bacterial regulatory proteins, tetR family E3397_RS13640 PF08362 YcdC-like protein, C-terminal region E3397_RS13645 PF10685 Stress-induced bacterial acidophilic repeat motif E3397_RS13650 PF03358 NADPH-dependent FMN reductase E3397_RS13655 PF13993 YccJ-like protein E3397_RS13660 PF00328 Histidine phosphatase superfamily (branch 2) E3397_RS13665 PF00578 AhpC/TSA family E3397_RS13670 PF13462 Thioredoxin E3397_RS13670 PF06965 Na+/H+ antiporter 1 E3397_RS13675 PF13098 Thioredoxin-like domain E3397_RS13675 PF02683 Cytochrome C biogenesis protein transmembrane region E3397_RS13675 PF11412 Disulphide bond corrector protein DsbC E3397_RS13685 PF00226 DnaJ domain E3397_RS13685 PF01556 DnaJ C terminal domain E3397_RS13705 PF12706 Beta-lactamase superfamily domain E3397_RS13715 PF07690 Major Facilitator Superfamily E3397_RS13720 PF03328 HpcH/HpaI aldolase/citrate lyase family E3397_RS13725 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3397_RS13730 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase E3397_RS13735 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase E3397_RS13740 PF00171 Aldehyde dehydrogenase family E3397_RS13745 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3397_RS13750 PF01047 MarR family E3397_RS13755 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal E3397_RS13755 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal E3397_RS13760 PF01613 Flavin reductase like domain E3397_RS13765 PF00576 HIUase/Transthyretin family E3397_RS13770 PF00072 Response regulator receiver domain E3397_RS13770 PF00486 Transcriptional regulatory protein, C terminal E3397_RS13775 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS13775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS13780 PF03577 Peptidase family C69 E3397_RS13790 PF13132 Domain of unknown function (DUF3950) E3397_RS13795 PF05925 Enterobacterial virulence protein IpgD E3397_RS13800 PF07824 Type III secretion chaperone domain E3397_RS13810 PF00805 Pentapeptide repeats (8 copies) E3397_RS13825 PF01027 Inhibitor of apoptosis-promoting Bax1 E3397_RS13830 PF04358 DsrC like protein E3397_RS13835 PF00708 Acylphosphatase E3397_RS13840 PF12833 Helix-turn-helix domain E3397_RS13845 PF01161 Phosphatidylethanolamine-binding protein E3397_RS13850 PF17785 PUA-like domain E3397_RS13850 PF10672 S-adenosylmethionine-dependent methyltransferase E3397_RS13855 PF08755 Hemimethylated DNA-binding protein YccV like E3397_RS13860 PF13380 CoA binding domain E3397_RS13865 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) E3397_RS13870 PF02142 MGS-like domain E3397_RS13875 PF00580 UvrD/REP helicase N-terminal domain E3397_RS13875 PF12462 DNA helicase IV / RNA helicase N terminal E3397_RS13875 PF13361 UvrD-like helicase C-terminal domain E3397_RS13880 PF03733 Inner membrane component domain E3397_RS13885 PF12805 FUSC-like inner membrane protein yccS E3397_RS13890 PF04994 TfoX C-terminal domain E3397_RS13890 PF04993 TfoX N-terminal domain E3397_RS13895 PF03846 Cell division inhibitor SulA E3397_RS13900 PF01389 OmpA-like transmembrane domain E3397_RS13900 PF00691 OmpA family E3397_RS13905 PF06303 MatP N-terminal domain E3397_RS13905 PF17414 MatP C-terminal ribbon-helix-helix domain E3397_RS13910 PF13654 AAA domain E3397_RS13910 PF05362 Lon protease (S16) C-terminal proteolytic domain E3397_RS13915 PF07977 FabA-like domain E3397_RS13920 PF04957 Ribosome modulation factor E3397_RS13925 PF03886 ABC-type transport auxiliary lipoprotein component E3397_RS13930 PF02470 MlaD protein E3397_RS13935 PF04403 Paraquat-inducible protein A E3397_RS13940 PF16326 ABC transporter C-terminal domain E3397_RS13940 PF00005 ABC transporter E3397_RS13940 PF12848 ABC transporter E3397_RS13945 PF01170 Putative RNA methylase family UPF0020 E3397_RS13945 PF10672 S-adenosylmethionine-dependent methyltransferase E3397_RS13945 PF02926 THUMP domain E3397_RS13950 PF03476 MOSC N-terminal beta barrel domain E3397_RS13950 PF00111 2Fe-2S iron-sulfur cluster binding domain E3397_RS13950 PF03473 MOSC domain E3397_RS13955 PF07126 Cell-division protein ZapC E3397_RS13960 PF01180 Dihydroorotate dehydrogenase E3397_RS13965 PF01433 Peptidase family M1 domain E3397_RS13965 PF17432 Domain of unknown function (DUF3458_C) ARM repeats E3397_RS13965 PF11940 Domain of unknown function (DUF3458) Ig-like fold E3397_RS13970 PF06183 DinI-like family E3397_RS13990 PF02413 Caudovirales tail fibre assembly protein, lambda gpK E3397_RS13995 PF03335 Phage tail fibre repeat E3397_RS13995 PF07484 Phage Tail Collar Domain E3397_RS13995 PF08400 Prophage tail fibre N-terminal E3397_RS14060 PF01385 Probable transposase E3397_RS14060 PF12323 Helix-turn-helix domain E3397_RS14060 PF07282 Putative transposase DNA-binding domain E3397_RS14075 PF03864 Phage major capsid protein E E3397_RS14085 PF01343 Peptidase family S49 E3397_RS14095 PF02831 gpW E3397_RS14100 PF02413 Caudovirales tail fibre assembly protein, lambda gpK E3397_RS14105 PF07471 Phage DNA packaging protein Nu1 E3397_RS14110 PF04151 Bacterial pre-peptidase C-terminal domain E3397_RS14115 PF03245 Bacteriophage Rz lysis protein E3397_RS14145 PF03589 Antitermination protein E3397_RS14185 PF01695 IstB-like ATP binding protein E3397_RS14230 PF12684 PDDEXK-like domain of unknown function (DUF3799) E3397_RS14230 PF06630 Enterobacterial exodeoxyribonuclease VIII E3397_RS14250 PF12167 Arm DNA-binding domain E3397_RS14250 PF00589 Phage integrase family E3397_RS14255 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain E3397_RS14255 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family E3397_RS14260 PF01235 Sodium:alanine symporter family E3397_RS14265 PF00291 Pyridoxal-phosphate dependent enzyme E3397_RS14275 PF01037 Lrp/AsnC ligand binding domain E3397_RS14275 PF13404 AsnC-type helix-turn-helix domain E3397_RS14280 PF01336 OB-fold nucleic acid binding domain E3397_RS14280 PF00152 tRNA synthetases class II (D, K and N) E3397_RS14285 PF00267 Gram-negative porin E3397_RS14290 PF00155 Aminotransferase class I and II E3397_RS14295 PF00753 Metallo-beta-lactamase superfamily E3397_RS14300 PF05951 Bacterial protein of unknown function (DUF882) E3397_RS14305 PF03734 L,D-transpeptidase catalytic domain E3397_RS14305 PF01471 Putative peptidoglycan binding domain E3397_RS14315 PF16330 MukB hinge domain E3397_RS14315 PF04310 MukB N-terminal E3397_RS14320 PF04288 MukE-like family E3397_RS14325 PF17193 MukF C-terminal domain E3397_RS14325 PF03882 MukF winged-helix domain E3397_RS14325 PF17192 MukF middle domain E3397_RS14330 PF13847 Methyltransferase domain E3397_RS14335 PF02698 DUF218 domain E3397_RS14340 PF01636 Phosphotransferase enzyme family E3397_RS14350 PF02348 Cytidylyltransferase E3397_RS14355 PF03966 Trm112p-like protein E3397_RS14360 PF06224 Winged helix DNA-binding domain E3397_RS14365 PF02606 Tetraacyldisaccharide-1-P 4'-kinase E3397_RS14370 PF00664 ABC transporter transmembrane region E3397_RS14370 PF00005 ABC transporter E3397_RS14375 PF00753 Metallo-beta-lactamase superfamily E3397_RS14375 PF03772 Competence protein E3397_RS14380 PF00216 Bacterial DNA-binding protein E3397_RS14385 PF00575 S1 RNA binding domain E3397_RS14390 PF02224 Cytidylate kinase E3397_RS14395 PF01435 Peptidase family M48 E3397_RS14400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3397_RS14405 PF00266 Aminotransferase class-V E3397_RS14410 PF04239 Protein of unknown function (DUF421) E3397_RS14415 PF18381 YcaO cyclodehydratase C-terminal domain E3397_RS14415 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding E3397_RS14420 PF01226 Formate/nitrite transporter E3397_RS14425 PF02901 Pyruvate formate lyase-like E3397_RS14425 PF01228 Glycine radical E3397_RS14430 PF11047 Salmonella outer protein D E3397_RS14440 PF04055 Radical SAM superfamily E3397_RS14445 PF13520 Amino acid permease E3397_RS14450 PF07690 Major Facilitator Superfamily E3397_RS14455 PF04976 DMSO reductase anchor subunit (DmsC) E3397_RS14460 PF13247 4Fe-4S dicluster domain E3397_RS14460 PF12800 4Fe-4S binding domain E3397_RS14465 PF01568 Molydopterin dinucleotide binding domain E3397_RS14465 PF00384 Molybdopterin oxidoreductase E3397_RS14465 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3397_RS14470 PF02403 Seryl-tRNA synthetase N-terminal domain E3397_RS14470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3397_RS14475 PF12002 MgsA AAA+ ATPase C terminal E3397_RS14475 PF16193 AAA C-terminal domain E3397_RS14475 PF00004 ATPase family associated with various cellular activities (AAA) E3397_RS14480 PF03548 Outer membrane lipoprotein carrier protein LolA E3397_RS14485 PF17854 FtsK alpha domain E3397_RS14485 PF13491 4TM region of DNA translocase FtsK/SpoIIIE E3397_RS14485 PF01580 FtsK/SpoIIIE family E3397_RS14485 PF09397 Ftsk gamma domain E3397_RS14490 PF01037 Lrp/AsnC ligand binding domain E3397_RS14495 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS14500 PF00005 ABC transporter E3397_RS14500 PF00664 ABC transporter transmembrane region E3397_RS14505 PF00005 ABC transporter E3397_RS14505 PF00664 ABC transporter transmembrane region E3397_RS14510 PF03588 Leucyl/phenylalanyl-tRNA protein transferase E3397_RS14520 PF01176 Translation initiation factor 1A / IF-1 E3397_RS14525 PF03466 LysR substrate binding domain E3397_RS14525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS14530 PF02678 Pirin E3397_RS14530 PF05726 Pirin C-terminal cupin domain E3397_RS14535 PF00857 Isochorismatase family E3397_RS14550 PF17871 AAA lid domain E3397_RS14550 PF00004 ATPase family associated with various cellular activities (AAA) E3397_RS14550 PF07724 AAA domain (Cdc48 subfamily) E3397_RS14550 PF02861 Clp amino terminal domain, pathogenicity island component E3397_RS14550 PF10431 C-terminal, D2-small domain, of ClpB protein E3397_RS14555 PF02617 ATP-dependent Clp protease adaptor protein ClpS E3397_RS14560 PF00313 'Cold-shock' DNA-binding domain E3397_RS14565 PF12704 MacB-like periplasmic core domain E3397_RS14565 PF02687 FtsX-like permease family E3397_RS14565 PF00005 ABC transporter E3397_RS14570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3397_RS14575 PF04393 Protein of unknown function (DUF535) E3397_RS14580 PF11398 Protein of unknown function (DUF2813) E3397_RS14585 PF03956 Lysine exporter LysO E3397_RS14590 PF03063 Prismane/CO dehydrogenase family E3397_RS14595 PF00111 2Fe-2S iron-sulfur cluster binding domain E3397_RS14595 PF00970 Oxidoreductase FAD-binding domain E3397_RS14595 PF00175 Oxidoreductase NAD-binding domain E3397_RS14600 PF00205 Thiamine pyrophosphate enzyme, central domain E3397_RS14600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3397_RS14600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3397_RS14605 PF01212 Beta-eliminating lyase E3397_RS14610 PF11066 Protein of unknown function (DUF2867) E3397_RS14610 PF13460 NAD(P)H-binding E3397_RS14615 PF01370 NAD dependent epimerase/dehydratase family E3397_RS14620 PF01510 N-acetylmuramoyl-L-alanine amidase E3397_RS14625 PF01906 Putative heavy-metal-binding E3397_RS14630 PF12883 Protein of unknown function (DUF3828) E3397_RS14635 PF00005 ABC transporter E3397_RS14640 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3397_RS14645 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS14650 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS14655 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3397_RS14670 PF03611 PTS system sugar-specific permease component E3397_RS14675 PF05958 tRNA (Uracil-5-)-methyltransferase E3397_RS14680 PF10767 Protein of unknown function (DUF2593) E3397_RS14685 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS14690 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS14695 PF08402 TOBE domain E3397_RS14695 PF00005 ABC transporter E3397_RS14700 PF13416 Bacterial extracellular solute-binding protein E3397_RS14705 PF10722 Putative bacterial sensory transduction regulator E3397_RS14710 PF18030 RimK PreATP-grasp domain E3397_RS14710 PF08443 RimK-like ATP-grasp domain E3397_RS14715 PF00881 Nitroreductase family E3397_RS14720 PF07214 Protein of unknown function (DUF1418) E3397_RS14725 PF00462 Glutaredoxin E3397_RS14730 PF11045 Putative inner membrane protein of Enterobacteriaceae E3397_RS14735 PF06826 Predicted Permease Membrane Region E3397_RS14735 PF02080 TrkA-C domain E3397_RS14745 PF00440 Bacterial regulatory proteins, tetR family E3397_RS14750 PF07690 Major Facilitator Superfamily E3397_RS14760 PF07690 Major Facilitator Superfamily E3397_RS14765 PF01569 PAP2 superfamily E3397_RS14770 PF08220 DeoR-like helix-turn-helix domain E3397_RS14770 PF00455 DeoR C terminal sensor domain E3397_RS14775 PF00768 D-alanyl-D-alanine carboxypeptidase E3397_RS14775 PF07943 Penicillin-binding protein 5, C-terminal domain E3397_RS14780 PF13417 Glutathione S-transferase, N-terminal domain E3397_RS14780 PF00043 Glutathione S-transferase, C-terminal domain E3397_RS14785 PF07995 Glucose / Sorbosone dehydrogenase E3397_RS14800 PF03466 LysR substrate binding domain E3397_RS14800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS14815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3397_RS14815 PF02770 Acyl-CoA dehydrogenase, middle domain E3397_RS14815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3397_RS14825 PF01012 Electron transfer flavoprotein domain E3397_RS14825 PF00766 Electron transfer flavoprotein FAD-binding domain E3397_RS14830 PF01012 Electron transfer flavoprotein domain E3397_RS14835 PF03328 HpcH/HpaI aldolase/citrate lyase family E3397_RS14840 PF10799 Biofilm formation protein (YliH/bssR) E3397_RS14845 PF18693 TRAM domain E3397_RS14845 PF00919 Uncharacterized protein family UPF0004 E3397_RS14845 PF04055 Radical SAM superfamily E3397_RS14850 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS14850 PF12911 N-terminal TM domain of oligopeptide transport permease C E3397_RS14855 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS14860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3397_RS14865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3397_RS14865 PF00005 ABC transporter E3397_RS14870 PF01112 Asparaginase E3397_RS14875 PF03454 MoeA C-terminal region (domain IV) E3397_RS14875 PF03453 MoeA N-terminal region (domain I and II) E3397_RS14875 PF00994 Probable molybdopterin binding domain E3397_RS14880 PF00899 ThiF family E3397_RS14885 PF04055 Radical SAM superfamily E3397_RS14890 PF01228 Glycine radical E3397_RS14890 PF02901 Pyruvate formate lyase-like E3397_RS14900 PF07350 Protein of unknown function (DUF1479) E3397_RS14905 PF00005 ABC transporter E3397_RS14905 PF12848 ABC transporter E3397_RS14910 PF03734 L,D-transpeptidase catalytic domain E3397_RS14910 PF17969 L,D-transpeptidase C-terminal domain E3397_RS14915 PF03600 Citrate transporter E3397_RS14920 PF02742 Iron dependent repressor, metal binding and dimerisation domain E3397_RS14920 PF01325 Iron dependent repressor, N-terminal DNA binding domain E3397_RS14930 PF00884 Sulfatase E3397_RS14935 PF13505 Outer membrane protein beta-barrel domain E3397_RS14940 PF00892 EamA-like transporter family E3397_RS14945 PF00210 Ferritin-like domain E3397_RS14950 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3397_RS14955 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS14960 PF00005 ABC transporter E3397_RS14965 PF00924 Mechanosensitive ion channel E3397_RS14970 PF05971 RNA methyltransferase E3397_RS14975 PF01258 Prokaryotic dksA/traR C4-type zinc finger E3397_RS14980 PF07338 Protein of unknown function (DUF1471) E3397_RS14985 PF02885 Glycosyl transferase family, helical bundle domain E3397_RS14990 PF06733 DEAD_2 E3397_RS14990 PF13307 Helicase C-terminal domain E3397_RS14995 PF00270 DEAD/DEAH box helicase E3397_RS14995 PF00271 Helicase conserved C-terminal domain E3397_RS15000 PF00440 Bacterial regulatory proteins, tetR family E3397_RS15000 PF09209 Tetracyclin repressor-like, C-terminal domain E3397_RS15005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3397_RS15010 PF00005 ABC transporter E3397_RS15025 PF11076 Putative inner membrane protein YbhQ E3397_RS15030 PF03372 Endonuclease/Exonuclease/phosphatase family E3397_RS15035 PF13091 PLD-like domain E3397_RS15040 PF03706 Lysylphosphatidylglycerol synthase TM region E3397_RS15060 PF01027 Inhibitor of apoptosis-promoting Bax1 E3397_RS15065 PF02391 MoaE protein E3397_RS15070 PF02597 ThiS family E3397_RS15075 PF01967 MoaC family E3397_RS15080 PF00994 Probable molybdopterin binding domain E3397_RS15085 PF06463 Molybdenum Cofactor Synthesis C E3397_RS15085 PF04055 Radical SAM superfamily E3397_RS15090 PF01933 Uncharacterised protein family UPF0052 E3397_RS15095 PF14496 C-terminal novel E3 ligase, LRR-interacting E3397_RS15095 PF12468 Type III secretion system leucine rich repeat protein E3397_RS15105 PF00271 Helicase conserved C-terminal domain E3397_RS15105 PF17757 UvrB interaction domain E3397_RS15105 PF04851 Type III restriction enzyme, res subunit E3397_RS15105 PF12344 Ultra-violet resistance protein B E3397_RS15105 PF02151 UvrB/uvrC motif E3397_RS15120 PF08241 Methyltransferase domain E3397_RS15125 PF00155 Aminotransferase class I and II E3397_RS15130 PF04055 Radical SAM superfamily E3397_RS15130 PF06968 Biotin and Thiamin Synthesis associated domain E3397_RS15135 PF00202 Aminotransferase class-III E3397_RS15140 PF01161 Phosphatidylethanolamine-binding protein E3397_RS15145 PF00221 Aromatic amino acid lyase E3397_RS15150 PF01175 Urocanase Rossmann-like domain E3397_RS15150 PF17392 Urocanase C-terminal domain E3397_RS15150 PF17391 Urocanase N-terminal domain E3397_RS15155 PF07702 UTRA domain E3397_RS15155 PF00392 Bacterial regulatory proteins, gntR family E3397_RS15160 PF00491 Arginase family E3397_RS15165 PF01979 Amidohydrolase family E3397_RS15170 PF01095 Pectinesterase E3397_RS15175 PF10282 Lactonase, 7-bladed beta-propeller E3397_RS15185 PF00005 ABC transporter E3397_RS15185 PF03459 TOBE domain E3397_RS15190 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS15200 PF10766 Multidrug efflux pump-associated protein AcrZ E3397_RS15205 PF03459 TOBE domain E3397_RS15205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS15210 PF00005 ABC transporter E3397_RS15220 PF16363 GDP-mannose 4,6 dehydratase E3397_RS15225 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain E3397_RS15225 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain E3397_RS15230 PF10509 Galactokinase galactose-binding signature E3397_RS15230 PF00288 GHMP kinases N terminal domain E3397_RS15230 PF08544 GHMP kinases C terminal E3397_RS15235 PF01263 Aldose 1-epimerase E3397_RS15240 PF00300 Histidine phosphatase superfamily (branch 1) E3397_RS15245 PF00005 ABC transporter E3397_RS15250 PF01032 FecCD transport family E3397_RS15255 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase E3397_RS15265 PF02436 Conserved carboxylase domain E3397_RS15265 PF00682 HMGL-like E3397_RS15265 PF00364 Biotin-requiring enzyme E3397_RS15270 PF04277 Oxaloacetate decarboxylase, gamma chain E3397_RS15275 PF02080 TrkA-C domain E3397_RS15275 PF03600 Citrate transporter E3397_RS15280 PF03466 LysR substrate binding domain E3397_RS15280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS15285 PF03466 LysR substrate binding domain E3397_RS15285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS15290 PF05681 Fumarate hydratase (Fumerase) E3397_RS15295 PF05683 Fumarase C-terminus E3397_RS15295 PF05681 Fumarate hydratase (Fumerase) E3397_RS15300 PF00793 DAHP synthetase I family E3397_RS15305 PF13985 YbgS-like protein E3397_RS15310 PF01545 Cation efflux family E3397_RS15315 PF04973 Nicotinamide mononucleotide transporter E3397_RS15320 PF02445 Quinolinate synthetase A protein E3397_RS15350 PF13174 Tetratricopeptide repeat E3397_RS15350 PF16331 TolA binding protein trimerisation E3397_RS15355 PF00691 OmpA family E3397_RS15360 PF04052 TolB amino-terminal domain E3397_RS15360 PF07676 WD40-like Beta Propeller Repeat E3397_RS15365 PF06519 TolA C-terminal E3397_RS15370 PF02472 Biopolymer transport protein ExbD/TolR E3397_RS15375 PF01618 MotA/TolQ/ExbB proton channel family E3397_RS15380 PF03061 Thioesterase superfamily E3397_RS15385 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) E3397_RS15390 PF08173 Membrane bound YbgT-like protein E3397_RS15395 PF02322 Cytochrome bd terminal oxidase subunit II E3397_RS15400 PF01654 Cytochrome bd terminal oxidase subunit I E3397_RS15405 PF00549 CoA-ligase E3397_RS15405 PF02629 CoA binding domain E3397_RS15410 PF08442 ATP-grasp domain E3397_RS15410 PF00549 CoA-ligase E3397_RS15415 PF00364 Biotin-requiring enzyme E3397_RS15415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3397_RS15415 PF02817 e3 binding domain E3397_RS15420 PF16870 2-oxoglutarate dehydrogenase C-terminal E3397_RS15420 PF02779 Transketolase, pyrimidine binding domain E3397_RS15420 PF16078 2-oxoglutarate dehydrogenase N-terminus E3397_RS15420 PF00676 Dehydrogenase E1 component E3397_RS15425 PF13085 2Fe-2S iron-sulfur cluster binding domain E3397_RS15430 PF02910 Fumarate reductase flavoprotein C-term E3397_RS15430 PF00890 FAD binding domain E3397_RS15435 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E3397_RS15440 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E3397_RS15445 PF00285 Citrate synthase, C-terminal domain E3397_RS15450 PF05145 Transition state regulatory protein AbrB E3397_RS15455 PF06827 Zinc finger found in FPG and IleRS E3397_RS15455 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E3397_RS15455 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E3397_RS15460 PF03746 LamB/YcsF family E3397_RS15465 PF02626 Carboxyltransferase domain, subdomain A and B E3397_RS15470 PF02682 Carboxyltransferase domain, subdomain C and D E3397_RS15475 PF01784 NIF3 (NGG1p interacting factor 3) E3397_RS15480 PF00854 POT family E3397_RS15485 PF00875 DNA photolyase E3397_RS15485 PF03441 FAD binding domain of DNA photolyase E3397_RS15490 PF10725 Protein of unknown function (DUF2517) E3397_RS15495 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) E3397_RS15500 PF03814 Potassium-transporting ATPase A subunit E3397_RS15510 PF02669 K+-transporting ATPase, c chain E3397_RS15515 PF13493 Domain of unknown function (DUF4118) E3397_RS15515 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS15515 PF02702 Osmosensitive K+ channel His kinase sensor domain E3397_RS15515 PF13492 GAF domain E3397_RS15515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS15520 PF00486 Transcriptional regulatory protein, C terminal E3397_RS15520 PF00072 Response regulator receiver domain E3397_RS15525 PF10940 Protein of unknown function (DUF2618) E3397_RS15530 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain E3397_RS15530 PF01276 Orn/Lys/Arg decarboxylase, major domain E3397_RS15530 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain E3397_RS15535 PF13520 Amino acid permease E3397_RS15545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3397_RS15545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3397_RS15545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3397_RS15545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3397_RS15550 PF03925 SeqA protein C-terminal domain E3397_RS15550 PF17206 SeqA protein N-terminal domain E3397_RS15555 PF12697 Alpha/beta hydrolase family E3397_RS15560 PF01402 Ribbon-helix-helix protein, copG family E3397_RS15565 PF00258 Flavodoxin E3397_RS15570 PF01475 Ferric uptake regulator family E3397_RS15575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS15575 PF03466 LysR substrate binding domain E3397_RS15580 PF14537 Cytochrome c3 E3397_RS15580 PF00890 FAD binding domain E3397_RS15590 PF07690 Major Facilitator Superfamily E3397_RS15595 PF13982 YbfN-like lipoprotein E3397_RS15600 PF03573 outer membrane porin, OprD family E3397_RS15605 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3397_RS15605 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain E3397_RS15610 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E3397_RS15610 PF00367 phosphotransferase system, EIIB E3397_RS15610 PF02378 Phosphotransferase system, EIIC E3397_RS15615 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase E3397_RS15620 PF01979 Amidohydrolase family E3397_RS15625 PF00480 ROK family E3397_RS15625 PF01047 MarR family E3397_RS15630 PF13344 Haloacid dehalogenase-like hydrolase E3397_RS15635 PF13537 Glutamine amidotransferase domain E3397_RS15635 PF00733 Asparagine synthase E3397_RS15675 PF01494 FAD binding domain E3397_RS15680 PF01938 TRAM domain E3397_RS15680 PF04055 Radical SAM superfamily E3397_RS15680 PF00919 Uncharacterized protein family UPF0004 E3397_RS15685 PF02562 PhoH-like protein E3397_RS15690 PF02130 Uncharacterized protein family UPF0054 E3397_RS15695 PF03471 Transporter associated domain E3397_RS15695 PF00571 CBS domain E3397_RS15700 PF00795 Carbon-nitrogen hydrolase E3397_RS15705 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3397_RS15710 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS15715 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS15720 PF00005 ABC transporter E3397_RS15725 PF01156 Inosine-uridine preferring nucleoside hydrolase E3397_RS15735 PF00012 Hsp70 protein E3397_RS15745 PF06889 Protein of unknown function (DUF1266) E3397_RS15755 PF06889 Protein of unknown function (DUF1266) E3397_RS15765 PF07295 Zinc-ribbon containing domain E3397_RS15770 PF00989 PAS fold E3397_RS15770 PF00158 Sigma-54 interaction domain E3397_RS15770 PF02954 Bacterial regulatory protein, Fis family E3397_RS15775 PF03812 2-keto-3-deoxygluconate permease E3397_RS15780 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus E3397_RS15790 PF00133 tRNA synthetases class I (I, L, M and V) E3397_RS15790 PF13603 Leucyl-tRNA synthetase, Domain 2 E3397_RS15790 PF08264 Anticodon-binding domain of tRNA E3397_RS15795 PF04390 Lipopolysaccharide-assembly E3397_RS15800 PF14840 Processivity clamp loader gamma complex DNA pol III C-term E3397_RS15800 PF06144 DNA polymerase III, delta subunit E3397_RS15805 PF01467 Cytidylyltransferase-like E3397_RS15810 PF00155 Aminotransferase class I and II E3397_RS15815 PF00300 Histidine phosphatase superfamily (branch 1) E3397_RS15825 PF02590 Predicted SPOUT methyltransferase E3397_RS15830 PF00905 Penicillin binding protein transpeptidase domain E3397_RS15830 PF03717 Penicillin-binding Protein dimerisation domain E3397_RS15835 PF01098 Cell cycle protein E3397_RS15840 PF05036 Sporulation related domain E3397_RS15840 PF03330 Lytic transglycolase E3397_RS15845 PF00768 D-alanyl-D-alanine carboxypeptidase E3397_RS15845 PF07943 Penicillin-binding protein 5, C-terminal domain E3397_RS15850 PF04359 Protein of unknown function (DUF493) E3397_RS15855 PF03099 Biotin/lipoate A/B protein ligase family E3397_RS15860 PF03466 LysR substrate binding domain E3397_RS15860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS15865 PF04055 Radical SAM superfamily E3397_RS15865 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family E3397_RS15870 PF02416 mttA/Hcf106 family E3397_RS15875 PF00795 Carbon-nitrogen hydrolase E3397_RS15880 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E3397_RS15885 PF00313 'Cold-shock' DNA-binding domain E3397_RS15890 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP E3397_RS15895 PF03606 C4-dicarboxylate anaerobic carrier E3397_RS15900 PF00072 Response regulator receiver domain E3397_RS15900 PF12431 Transcriptional regulator E3397_RS15905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS15905 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain E3397_RS15905 PF17203 Single cache domain 3 E3397_RS15905 PF00989 PAS fold E3397_RS15910 PF08218 Citrate lyase ligase C-terminal domain E3397_RS15915 PF06857 Malonate decarboxylase delta subunit (MdcD) E3397_RS15920 PF03328 HpcH/HpaI aldolase/citrate lyase family E3397_RS15925 PF04223 Citrate lyase, alpha subunit (CitF) E3397_RS15930 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase E3397_RS15935 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase E3397_RS15940 PF00939 Sodium:sulfate symporter transmembrane region E3397_RS15945 PF00445 Ribonuclease T2 family E3397_RS15950 PF14760 Rnk N-terminus E3397_RS15950 PF01272 Transcription elongation factor, GreA/GreB, C-term E3397_RS15955 PF00107 Zinc-binding dehydrogenase E3397_RS15955 PF13823 Alcohol dehydrogenase GroES-associated E3397_RS15955 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS15960 PF00582 Universal stress protein family E3397_RS15970 PF13247 4Fe-4S dicluster domain E3397_RS15975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3397_RS15975 PF00384 Molybdopterin oxidoreductase E3397_RS15975 PF01568 Molydopterin dinucleotide binding domain E3397_RS15985 PF13192 Thioredoxin domain E3397_RS15985 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS15990 PF00578 AhpC/TSA family E3397_RS15990 PF10417 C-terminal domain of 1-Cys peroxiredoxin E3397_RS15995 PF13098 Thioredoxin-like domain E3397_RS16005 PF11922 Domain of unknown function (DUF3440) E3397_RS16005 PF01507 Phosphoadenosine phosphosulfate reductase family E3397_RS16010 PF02195 ParB-like nuclease domain E3397_RS16015 PF00155 Aminotransferase class I and II E3397_RS16020 PF00465 Iron-containing alcohol dehydrogenase E3397_RS16025 PF04328 Selenoprotein, putative E3397_RS16030 PF02554 Carbon starvation protein CstA E3397_RS16030 PF13722 5TM C-terminal transporter carbon starvation CstA E3397_RS16035 PF03061 Thioesterase superfamily E3397_RS16045 PF00857 Isochorismatase family E3397_RS16045 PF00550 Phosphopantetheine attachment site E3397_RS16050 PF13193 AMP-binding enzyme C-terminal domain E3397_RS16050 PF00501 AMP-binding enzyme E3397_RS16055 PF00425 chorismate binding enzyme E3397_RS16060 PF01497 Periplasmic binding protein E3397_RS16065 PF05977 Transmembrane secretion effector E3397_RS16070 PF01032 FecCD transport family E3397_RS16075 PF01032 FecCD transport family E3397_RS16080 PF00005 ABC transporter E3397_RS16085 PF02706 Chain length determinant protein E3397_RS16090 PF00501 AMP-binding enzyme E3397_RS16090 PF13193 AMP-binding enzyme C-terminal domain E3397_RS16090 PF00668 Condensation domain E3397_RS16090 PF00550 Phosphopantetheine attachment site E3397_RS16090 PF00975 Thioesterase domain E3397_RS16095 PF03621 MbtH-like protein E3397_RS16100 PF00756 Putative esterase E3397_RS16100 PF11806 Domain of unknown function (DUF3327) E3397_RS16105 PF00593 TonB dependent receptor E3397_RS16105 PF07715 TonB-dependent Receptor Plug Domain E3397_RS16110 PF17837 4'-phosphopantetheinyl transferase N-terminal domain E3397_RS16110 PF01648 4'-phosphopantetheinyl transferase superfamily E3397_RS16115 PF04107 Glutamate-cysteine ligase family 2(GCS2) E3397_RS16120 PF06643 Protein of unknown function (DUF1158) E3397_RS16125 PF12833 Helix-turn-helix domain E3397_RS16130 PF16295 Tetracyclin repressor-like, C-terminal domain E3397_RS16130 PF00440 Bacterial regulatory proteins, tetR family E3397_RS16135 PF04237 YjbR E3397_RS16140 PF00881 Nitroreductase family E3397_RS16150 PF03830 PTS system sorbose subfamily IIB component E3397_RS16160 PF03613 PTS system mannose/fructose/sorbose family IID component E3397_RS16170 PF01380 SIS domain E3397_RS16175 PF00158 Sigma-54 interaction domain E3397_RS16175 PF00874 PRD domain E3397_RS16175 PF03610 PTS system fructose IIA component E3397_RS16180 PF03797 Autotransporter beta-domain E3397_RS16180 PF00657 GDSL-like Lipase/Acylhydrolase E3397_RS16185 PF00924 Mechanosensitive ion channel E3397_RS16190 PF00324 Amino acid permease E3397_RS16200 PF04224 Protein of unknown function, DUF417 E3397_RS16205 PF07338 Protein of unknown function (DUF1471) E3397_RS16210 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS16210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3397_RS16215 PF12833 Helix-turn-helix domain E3397_RS16215 PF12852 Cupin E3397_RS16220 PF00873 AcrB/AcrD/AcrF family E3397_RS16225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS16225 PF00672 HAMP domain E3397_RS16225 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS16235 PF04138 GtrA-like protein E3397_RS16240 PF00535 Glycosyl transferase family 2 E3397_RS16265 PF00535 Glycosyl transferase family 2 E3397_RS16270 PF04138 GtrA-like protein E3397_RS16285 PF00589 Phage integrase family E3397_RS16300 PF00196 Bacterial regulatory proteins, luxR family E3397_RS16315 PF00072 Response regulator receiver domain E3397_RS16315 PF00196 Bacterial regulatory proteins, luxR family E3397_RS16320 PF00419 Fimbrial protein E3397_RS16325 PF00419 Fimbrial protein E3397_RS16330 PF00577 Outer membrane usher protein E3397_RS16330 PF13954 PapC N-terminal domain E3397_RS16330 PF13953 PapC C-terminal domain E3397_RS16335 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS16335 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS16345 PF00419 Fimbrial protein E3397_RS16355 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E3397_RS16355 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E3397_RS16365 PF04307 LexA-binding, inner membrane-associated putative hydrolase E3397_RS16380 PF01406 tRNA synthetases class I (C) catalytic domain E3397_RS16380 PF09190 DALR domain E3397_RS16385 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E3397_RS16390 PF12850 Calcineurin-like phosphoesterase superfamily domain E3397_RS16395 PF00731 AIR carboxylase E3397_RS16400 PF02222 ATP-grasp domain E3397_RS16400 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain E3397_RS16405 PF00696 Amino acid kinase family E3397_RS16410 PF11392 Protein of unknown function (DUF2877) E3397_RS16415 PF06545 Protein of unknown function (DUF1116) E3397_RS16420 PF00549 CoA-ligase E3397_RS16420 PF02629 CoA binding domain E3397_RS16425 PF02615 Malate/L-lactate dehydrogenase E3397_RS16430 PF01546 Peptidase family M20/M25/M40 E3397_RS16435 PF07883 Cupin domain E3397_RS16435 PF05899 Protein of unknown function (DUF861) E3397_RS16440 PF02595 Glycerate kinase family E3397_RS16445 PF00860 Permease family E3397_RS16450 PF01979 Amidohydrolase family E3397_RS16455 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin E3397_RS16465 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3397_RS16465 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3397_RS16470 PF01261 Xylose isomerase-like TIM barrel E3397_RS16475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3397_RS16475 PF00205 Thiamine pyrophosphate enzyme, central domain E3397_RS16475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3397_RS16480 PF09339 IclR helix-turn-helix domain E3397_RS16480 PF01614 Bacterial transcriptional regulator E3397_RS16485 PF04115 Ureidoglycolate lyase E3397_RS16490 PF03466 LysR substrate binding domain E3397_RS16490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS16500 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS16505 PF00005 ABC transporter E3397_RS16505 PF09383 NIL domain E3397_RS16510 PF03180 NLPA lipoprotein E3397_RS16525 PF00005 ABC transporter E3397_RS16530 PF13472 GDSL-like Lipase/Acylhydrolase family E3397_RS16535 PF00106 short chain dehydrogenase E3397_RS16540 PF00085 Thioredoxin E3397_RS16545 PF03649 Uncharacterised protein family (UPF0014) E3397_RS16550 PF00005 ABC transporter E3397_RS16555 PF16200 C-terminal region of band_7 E3397_RS16555 PF01145 SPFH domain / Band 7 family E3397_RS16560 PF01957 NfeD-like C-terminal, partner-binding E3397_RS16565 PF13411 MerR HTH family regulatory protein E3397_RS16570 PF00403 Heavy-metal-associated domain E3397_RS16580 PF01963 TraB family E3397_RS16585 PF04073 Aminoacyl-tRNA editing domain E3397_RS16590 PF00149 Calcineurin-like phosphoesterase E3397_RS16590 PF02872 5'-nucleotidase, C-terminal domain E3397_RS16595 PF07690 Major Facilitator Superfamily E3397_RS16600 PF02254 TrkA-N domain E3397_RS16600 PF00999 Sodium/hydrogen exchanger family E3397_RS16605 PF00294 pfkB family carbohydrate kinase E3397_RS16610 PF07859 alpha/beta hydrolase fold E3397_RS16615 PF00762 Ferrochelatase E3397_RS16620 PF05191 Adenylate kinase, active site lid E3397_RS16625 PF00183 Hsp90 protein E3397_RS16625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS16630 PF02132 RecR protein E3397_RS16630 PF13662 Toprim domain E3397_RS16635 PF02575 YbaB/EbfC DNA-binding family E3397_RS16640 PF12170 DNA polymerase III tau subunit V interacting with alpha E3397_RS16640 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding E3397_RS16640 PF12169 DNA polymerase III subunits gamma and tau domain III E3397_RS16645 PF00156 Phosphoribosyl transferase domain E3397_RS16650 PF04304 Protein of unknown function (DUF454) E3397_RS16655 PF07445 Primosomal replication protein priC E3397_RS16660 PF10689 Protein of unknown function (DUF2496) E3397_RS16665 PF04754 Putative transposase, YhgA-like E3397_RS16670 PF12794 Mechanosensitive ion channel inner membrane domain 1 E3397_RS16670 PF12795 Mechanosensitive ion channel porin domain E3397_RS16670 PF00924 Mechanosensitive ion channel E3397_RS16675 PF00440 Bacterial regulatory proteins, tetR family E3397_RS16675 PF08361 MAATS-type transcriptional repressor, C-terminal region E3397_RS16680 PF00529 HlyD membrane-fusion protein of T1SS E3397_RS16680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3397_RS16685 PF00873 AcrB/AcrD/AcrF family E3397_RS16690 PF10757 Biofilm formation regulator YbaJ E3397_RS16695 PF05321 Haemolysin expression modulating protein E3397_RS16700 PF14602 Hexapeptide repeat of succinyl-transferase E3397_RS16700 PF12464 Maltose acetyltransferase E3397_RS16705 PF10777 Inner membrane protein YlaC E3397_RS16710 PF00444 Ribosomal protein L36 E3397_RS16715 PF01197 Ribosomal protein L31 E3397_RS16720 PF00563 EAL domain E3397_RS16720 PF12792 CSS motif domain associated with EAL E3397_RS16730 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3397_RS16735 PF09619 Type III secretion system lipoprotein chaperone (YscW) E3397_RS16745 PF00909 Ammonium Transporter Family E3397_RS16750 PF00543 Nitrogen regulatory protein P-II E3397_RS16755 PF00005 ABC transporter E3397_RS16755 PF00664 ABC transporter transmembrane region E3397_RS16760 PF00664 ABC transporter transmembrane region E3397_RS16760 PF00005 ABC transporter E3397_RS16765 PF13404 AsnC-type helix-turn-helix domain E3397_RS16765 PF01037 Lrp/AsnC ligand binding domain E3397_RS16780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3397_RS16780 PF12793 Sugar transport-related sRNA regulator N-term E3397_RS16785 PF06508 Queuosine biosynthesis protein QueC E3397_RS16800 PF13145 PPIC-type PPIASE domain E3397_RS16805 PF00216 Bacterial DNA-binding protein E3397_RS16810 PF05362 Lon protease (S16) C-terminal proteolytic domain E3397_RS16810 PF00004 ATPase family associated with various cellular activities (AAA) E3397_RS16810 PF02190 ATP-dependent protease La (LON) substrate-binding domain E3397_RS16815 PF07724 AAA domain (Cdc48 subfamily) E3397_RS16815 PF06689 ClpX C4-type zinc finger E3397_RS16815 PF10431 C-terminal, D2-small domain, of ClpB protein E3397_RS16820 PF00574 Clp protease E3397_RS16825 PF05697 Bacterial trigger factor protein (TF) E3397_RS16825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3397_RS16825 PF05698 Bacterial trigger factor protein (TF) C-terminus E3397_RS16835 PF01722 BolA-like protein E3397_RS16840 PF03923 Uncharacterized lipoprotein E3397_RS16840 PF08139 Prokaryotic membrane lipoprotein lipid attachment site E3397_RS16845 PF07690 Major Facilitator Superfamily E3397_RS16850 PF06481 COX Aromatic Rich Motif E3397_RS16850 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E3397_RS16855 PF00115 Cytochrome C and Quinol oxidase polypeptide I E3397_RS16860 PF00510 Cytochrome c oxidase subunit III E3397_RS16865 PF03626 Prokaryotic Cytochrome C oxidase subunit IV E3397_RS16870 PF01040 UbiA prenyltransferase family E3397_RS16885 PF07690 Major Facilitator Superfamily E3397_RS16890 PF04461 Protein of unknown function (DUF520) E3397_RS16895 PF08546 Ketopantoate reductase PanE/ApbA C terminal E3397_RS16895 PF02558 Ketopantoate reductase PanE/ApbA E3397_RS16900 PF01965 DJ-1/PfpI family E3397_RS16910 PF00266 Aminotransferase class-V E3397_RS16915 PF07702 UTRA domain E3397_RS16915 PF00392 Bacterial regulatory proteins, gntR family E3397_RS16920 PF01547 Bacterial extracellular solute-binding protein E3397_RS16925 PF00005 ABC transporter E3397_RS16925 PF08402 TOBE domain E3397_RS16930 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS16935 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS16940 PF02926 THUMP domain E3397_RS16940 PF02568 Thiamine biosynthesis protein (ThiI) E3397_RS16945 PF02609 Exonuclease VII small subunit E3397_RS16950 PF00348 Polyprenyl synthetase E3397_RS16955 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E3397_RS16955 PF02780 Transketolase, C-terminal domain E3397_RS16955 PF02779 Transketolase, pyrimidine binding domain E3397_RS16960 PF00248 Aldo/keto reductase family E3397_RS16965 PF04608 Phosphatidylglycerophosphatase A E3397_RS16970 PF02769 AIR synthase related protein, C-terminal domain E3397_RS16970 PF00586 AIR synthase related protein, N-terminal domain E3397_RS16975 PF01029 NusB family E3397_RS16980 PF00885 6,7-dimethyl-8-ribityllumazine synthase E3397_RS16985 PF01872 RibD C-terminal domain E3397_RS16985 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E3397_RS16990 PF03477 ATP cone domain E3397_RS16995 PF11622 Protein of unknown function (DUF3251) E3397_RS17000 PF03502 Nucleoside-specific channel-forming protein, Tsx E3397_RS17015 PF01844 HNH endonuclease E3397_RS17030 PF07549 SecD/SecF GG Motif E3397_RS17030 PF02355 Protein export membrane protein E3397_RS17035 PF13721 SecD export protein N-terminal TM region E3397_RS17035 PF02355 Protein export membrane protein E3397_RS17035 PF07549 SecD/SecF GG Motif E3397_RS17040 PF02699 Preprotein translocase subunit E3397_RS17045 PF01702 Queuine tRNA-ribosyltransferase E3397_RS17050 PF02547 Queuosine biosynthesis protein E3397_RS17055 PF04336 Acyl carrier protein phosphodiesterase E3397_RS17060 PF00578 AhpC/TSA family E3397_RS17060 PF10417 C-terminal domain of 1-Cys peroxiredoxin E3397_RS17065 PF00128 Alpha amylase, catalytic domain E3397_RS17065 PF02903 Alpha amylase, N-terminal ig-like domain E3397_RS17070 PF00324 Amino acid permease E3397_RS17075 PF05525 Branched-chain amino acid transport protein E3397_RS17080 PF00989 PAS fold E3397_RS17080 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS17080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS17080 PF11808 Phosphate regulon sensor protein PhoR E3397_RS17085 PF00486 Transcriptional regulatory protein, C terminal E3397_RS17085 PF00072 Response regulator receiver domain E3397_RS17090 PF00149 Calcineurin-like phosphoesterase E3397_RS17090 PF12320 Type 5 capsule protein repressor C-terminal domain E3397_RS17095 PF13476 AAA domain E3397_RS17100 PF07690 Major Facilitator Superfamily E3397_RS17105 PF00480 ROK family E3397_RS17115 PF06865 Pyrimidine/purine nucleoside phosphorylase E3397_RS17120 PF07302 AroM protein E3397_RS17125 PF16362 YaiA protein E3397_RS17130 PF01202 Shikimate kinase E3397_RS17135 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 E3397_RS17140 PF03807 NADP oxidoreductase coenzyme F420-dependent E3397_RS17140 PF14748 Pyrroline-5-carboxylate reductase dimerisation E3397_RS17145 PF00990 Diguanylate cyclase, GGDEF domain E3397_RS17145 PF05230 MASE2 domain E3397_RS17150 PF07769 psiF repeat E3397_RS17155 PF10796 Sigma-S stabilisation anti-adaptor protein E3397_RS17160 PF07690 Major Facilitator Superfamily E3397_RS17170 PF01820 D-ala D-ala ligase N-terminus E3397_RS17170 PF07478 D-ala D-ala ligase C-terminus E3397_RS17175 PF10953 Protein of unknown function (DUF2754) E3397_RS17180 PF10954 Protein of unknown function (DUF2755) E3397_RS17185 PF07759 Protein of unknown function (DUF1615) E3397_RS17190 PF05992 SbmA/BacA-like family E3397_RS17200 PF00144 Beta-lactamase E3397_RS17205 PF15977 Winged helix-turn-helix DNA binding E3397_RS17210 PF03797 Autotransporter beta-domain E3397_RS17215 PF00490 Delta-aminolevulinic acid dehydratase E3397_RS17220 PF13193 AMP-binding enzyme C-terminal domain E3397_RS17220 PF00501 AMP-binding enzyme E3397_RS17220 PF16177 Acetyl-coenzyme A synthetase N-terminus E3397_RS17225 PF03972 MmgE/PrpD family E3397_RS17230 PF00285 Citrate synthase, C-terminal domain E3397_RS17240 PF00158 Sigma-54 interaction domain E3397_RS17240 PF02954 Bacterial regulatory protein, Fis family E3397_RS17240 PF06506 Propionate catabolism activator E3397_RS17245 PF07338 Protein of unknown function (DUF1471) E3397_RS17250 PF01810 LysE type translocator E3397_RS17255 PF00593 TonB dependent receptor E3397_RS17255 PF07715 TonB-dependent Receptor Plug Domain E3397_RS17270 PF02322 Cytochrome bd terminal oxidase subunit II E3397_RS17275 PF01654 Cytochrome bd terminal oxidase subunit I E3397_RS17285 PF04851 Type III restriction enzyme, res subunit E3397_RS17285 PF08774 VRR-NUC domain E3397_RS17290 PF18273 Type III R-M EcoP15I C-terminal domain E3397_RS17290 PF01555 DNA methylase E3397_RS17295 PF07690 Major Facilitator Superfamily E3397_RS17305 PF09278 MerR, DNA binding E3397_RS17305 PF00376 MerR family regulatory protein E3397_RS17310 PF00403 Heavy-metal-associated domain E3397_RS17315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3397_RS17315 PF00529 HlyD membrane-fusion protein of T1SS E3397_RS17320 PF00873 AcrB/AcrD/AcrF family E3397_RS17325 PF02321 Outer membrane efflux protein E3397_RS17345 PF13505 Outer membrane protein beta-barrel domain E3397_RS17360 PF12792 CSS motif domain associated with EAL E3397_RS17360 PF00563 EAL domain E3397_RS17375 PF16970 Type-1 fimbrial protein, A E3397_RS17380 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS17380 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS17385 PF13954 PapC N-terminal domain E3397_RS17385 PF00577 Outer membrane usher protein E3397_RS17385 PF13953 PapC C-terminal domain E3397_RS17395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS17395 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS17410 PF03466 LysR substrate binding domain E3397_RS17410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS17415 PF00561 alpha/beta hydrolase fold E3397_RS17420 PF01557 Fumarylacetoacetate (FAA) hydrolase family E3397_RS17425 PF00694 Aconitase C-terminal domain E3397_RS17430 PF00330 Aconitase family (aconitate hydratase) E3397_RS17435 PF07690 Major Facilitator Superfamily E3397_RS17440 PF08986 Domain of unknown function (DUF1889) E3397_RS17445 PF08841 Diol dehydratase reactivase ATPase-like domain E3397_RS17445 PF18427 DD-reactivating factor swiveling domain E3397_RS17450 PF18427 DD-reactivating factor swiveling domain E3397_RS17450 PF08841 Diol dehydratase reactivase ATPase-like domain E3397_RS17460 PF00589 Phage integrase family E3397_RS17460 PF13356 Arm DNA-binding domain E3397_RS17470 PF00171 Aldehyde dehydrogenase family E3397_RS17475 PF01472 PUA domain E3397_RS17475 PF00696 Amino acid kinase family E3397_RS17480 PF00267 Gram-negative porin E3397_RS17485 PF07417 Sigma factor-binding transcriptional regulator Crl E3397_RS17490 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) E3397_RS17495 PF00156 Phosphoribosyl transferase domain E3397_RS17500 PF07687 Peptidase dimerisation domain E3397_RS17500 PF01546 Peptidase family M20/M25/M40 E3397_RS17505 PF00472 RF-1 domain E3397_RS17515 PF11798 IMS family HHH motif E3397_RS17515 PF11799 impB/mucB/samB family C-terminal domain E3397_RS17515 PF00817 impB/mucB/samB family E3397_RS17520 PF03734 L,D-transpeptidase catalytic domain E3397_RS17525 PF13230 Glutamine amidotransferases class-II E3397_RS17530 PF13580 SIS domain E3397_RS17535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3397_RS17535 PF02770 Acyl-CoA dehydrogenase, middle domain E3397_RS17535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3397_RS17535 PF09317 Domain of unknown function (DUF1974) E3397_RS17540 PF00795 Carbon-nitrogen hydrolase E3397_RS17550 PF13505 Outer membrane protein beta-barrel domain E3397_RS17570 PF13404 AsnC-type helix-turn-helix domain E3397_RS17570 PF01037 Lrp/AsnC ligand binding domain E3397_RS17615 PF03466 LysR substrate binding domain E3397_RS17615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS17635 PF13953 PapC C-terminal domain E3397_RS17635 PF00577 Outer membrane usher protein E3397_RS17635 PF13954 PapC N-terminal domain E3397_RS17640 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS17640 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS17670 PF13148 Protein of unknown function (DUF3987) E3397_RS17700 PF01926 50S ribosome-binding GTPase E3397_RS17710 PF13280 WYL domain E3397_RS17710 PF08220 DeoR-like helix-turn-helix domain E3397_RS17740 PF06006 Bacterial protein of unknown function (DUF905) E3397_RS17745 PF06067 Domain of unknown function (DUF932) E3397_RS17760 PF03230 Antirestriction protein E3397_RS17765 PF04002 RadC-like JAB domain E3397_RS17775 PF06174 Protein of unknown function (DUF987) E3397_RS17785 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A E3397_RS17795 PF06755 CbtA_toxin of type IV toxin-antitoxin system E3397_RS17820 PF00929 Exonuclease E3397_RS17825 PF00075 RNase H E3397_RS17830 PF08241 Methyltransferase domain E3397_RS17835 PF00753 Metallo-beta-lactamase superfamily E3397_RS17835 PF16123 Hydroxyacylglutathione hydrolase C-terminus E3397_RS17840 PF01476 LysM domain E3397_RS17840 PF01464 Transglycosylase SLT domain E3397_RS17845 PF08241 Methyltransferase domain E3397_RS17850 PF03372 Endonuclease/Exonuclease/phosphatase family E3397_RS17855 PF07690 Major Facilitator Superfamily E3397_RS17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS17860 PF03466 LysR substrate binding domain E3397_RS17865 PF00248 Aldo/keto reductase family E3397_RS17905 PF00005 ABC transporter E3397_RS17905 PF09383 NIL domain E3397_RS17910 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS17915 PF03180 NLPA lipoprotein E3397_RS17920 PF16358 RcsF lipoprotein E3397_RS17925 PF01980 tRNA-methyltransferase O E3397_RS17925 PF18389 TrmO C-terminal domain E3397_RS17930 PF03129 Anticodon binding domain E3397_RS17930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3397_RS17930 PF04073 Aminoacyl-tRNA editing domain E3397_RS17935 PF17185 NlpE C-terminal OB domain E3397_RS17935 PF04170 NlpE N-terminal domain E3397_RS17940 PF00472 RF-1 domain E3397_RS17945 PF07152 YaeQ protein E3397_RS17950 PF06786 Uncharacterised protein family (UPF0253) E3397_RS17955 PF07073 Modulator of Rho-dependent transcription termination (ROF) E3397_RS17960 PF11734 TilS substrate C-terminal domain E3397_RS17960 PF01171 PP-loop family E3397_RS17960 PF09179 TilS substrate binding domain E3397_RS17965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3397_RS17970 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain E3397_RS17970 PF01276 Orn/Lys/Arg decarboxylase, major domain E3397_RS17970 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain E3397_RS17975 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading E3397_RS17975 PF18416 N-acetylglucosamine binding protein domain 2 E3397_RS17980 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E3397_RS17985 PF14579 Helix-hairpin-helix motif E3397_RS17985 PF02811 PHP domain E3397_RS17985 PF01336 OB-fold nucleic acid binding domain E3397_RS17985 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E3397_RS17985 PF07733 Bacterial DNA polymerase III alpha NTPase domain E3397_RS17990 PF01351 Ribonuclease HII E3397_RS17995 PF02684 Lipid-A-disaccharide synthetase E3397_RS18000 PF00132 Bacterial transferase hexapeptide (six repeats) E3397_RS18000 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 E3397_RS18005 PF07977 FabA-like domain E3397_RS18010 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E3397_RS18010 PF00132 Bacterial transferase hexapeptide (six repeats) E3397_RS18015 PF03938 Outer membrane protein (OmpH-like) E3397_RS18020 PF01103 Surface antigen E3397_RS18020 PF07244 Surface antigen variable number repeat E3397_RS18025 PF17820 PDZ domain E3397_RS18025 PF02163 Peptidase family M50 E3397_RS18035 PF01255 Putative undecaprenyl diphosphate synthase E3397_RS18040 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E3397_RS18040 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E3397_RS18040 PF13288 DXP reductoisomerase C-terminal domain E3397_RS18045 PF01765 Ribosome recycling factor E3397_RS18050 PF00696 Amino acid kinase family E3397_RS18055 PF00889 Elongation factor TS E3397_RS18060 PF00318 Ribosomal protein S2 E3397_RS18065 PF00557 Metallopeptidase family M24 E3397_RS18070 PF01842 ACT domain E3397_RS18070 PF01966 HD domain E3397_RS18070 PF08335 GlnD PII-uridylyltransferase E3397_RS18070 PF01909 Nucleotidyltransferase domain E3397_RS18075 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal E3397_RS18075 PF14602 Hexapeptide repeat of succinyl-transferase E3397_RS18075 PF00132 Bacterial transferase hexapeptide (six repeats) E3397_RS18080 PF07690 Major Facilitator Superfamily E3397_RS18080 PF00083 Sugar (and other) transporter E3397_RS18085 PF11944 Protein of unknown function (DUF3461) E3397_RS18090 PF05651 Putative sugar diacid recognition E3397_RS18090 PF13556 PucR C-terminal helix-turn-helix domain E3397_RS18090 PF17853 GGDEF-like domain E3397_RS18095 PF00595 PDZ domain E3397_RS18100 PF13286 Phosphohydrolase-associated domain E3397_RS18100 PF01966 HD domain E3397_RS18105 PF01048 Phosphorylase superfamily E3397_RS18110 PF01497 Periplasmic binding protein E3397_RS18115 PF03458 UPF0126 domain E3397_RS18120 PF01521 Iron-sulphur cluster biosynthesis E3397_RS18125 PF00654 Voltage gated chloride channel E3397_RS18130 PF00202 Aminotransferase class-III E3397_RS18135 PF11245 Protein of unknown function (DUF2544) E3397_RS18140 PF00419 Fimbrial protein E3397_RS18145 PF00419 Fimbrial protein E3397_RS18150 PF00419 Fimbrial protein E3397_RS18155 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS18155 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS18160 PF13954 PapC N-terminal domain E3397_RS18160 PF00577 Outer membrane usher protein E3397_RS18160 PF13953 PapC C-terminal domain E3397_RS18175 PF01032 FecCD transport family E3397_RS18180 PF01497 Periplasmic binding protein E3397_RS18185 PF00005 ABC transporter E3397_RS18190 PF07715 TonB-dependent Receptor Plug Domain E3397_RS18190 PF00593 TonB dependent receptor E3397_RS18195 PF14814 Bifunctional transglycosylase second domain E3397_RS18195 PF00912 Transglycosylase E3397_RS18195 PF00905 Penicillin binding protein transpeptidase domain E3397_RS18195 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal E3397_RS18200 PF08482 ATP-dependent helicase C-terminal E3397_RS18200 PF00271 Helicase conserved C-terminal domain E3397_RS18200 PF04408 Helicase associated domain (HA2) E3397_RS18200 PF00270 DEAD/DEAH box helicase E3397_RS18205 PF02834 LigT like Phosphoesterase E3397_RS18210 PF17746 SfsA N-terminal OB domain E3397_RS18210 PF03749 Sugar fermentation stimulation protein RE domain E3397_RS18215 PF01258 Prokaryotic dksA/traR C4-type zinc finger E3397_RS18220 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3397_RS18225 PF01743 Poly A polymerase head domain E3397_RS18225 PF12626 Polymerase A arginine-rich C-terminus E3397_RS18225 PF12627 Probable RNA and SrmB- binding site of polymerase A E3397_RS18230 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E3397_RS18235 PF02548 Ketopantoate hydroxymethyltransferase E3397_RS18240 PF02569 Pantoate-beta-alanine ligase E3397_RS18245 PF02261 Aspartate decarboxylase E3397_RS18255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS18255 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS18260 PF13953 PapC C-terminal domain E3397_RS18260 PF13954 PapC N-terminal domain E3397_RS18260 PF00577 Outer membrane usher protein E3397_RS18265 PF00419 Fimbrial protein E3397_RS18285 PF01522 Polysaccharide deacetylase E3397_RS18290 PF03610 PTS system fructose IIA component E3397_RS18300 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS18300 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS18305 PF13953 PapC C-terminal domain E3397_RS18305 PF00577 Outer membrane usher protein E3397_RS18305 PF13954 PapC N-terminal domain E3397_RS18310 PF00419 Fimbrial protein E3397_RS18315 PF01061 ABC-2 type transporter E3397_RS18320 PF00005 ABC transporter E3397_RS18325 PF00484 Carbonic anhydrase E3397_RS18330 PF00156 Phosphoribosyl transferase domain E3397_RS18335 PF01011 PQQ enzyme repeat E3397_RS18340 PF07732 Multicopper oxidase E3397_RS18340 PF07731 Multicopper oxidase E3397_RS18340 PF00394 Multicopper oxidase E3397_RS18345 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) E3397_RS18350 PF17284 Spermidine synthase tetramerisation domain E3397_RS18355 PF02675 S-adenosylmethionine decarboxylase E3397_RS18360 PF08220 DeoR-like helix-turn-helix domain E3397_RS18360 PF00455 DeoR C terminal sensor domain E3397_RS18365 PF04166 Pyridoxal phosphate biosynthetic protein PdxA E3397_RS18370 PF17042 Nucleotide-binding C-terminal domain E3397_RS18370 PF07005 Sugar-binding N-terminal domain E3397_RS18375 PF03812 2-keto-3-deoxygluconate permease E3397_RS18380 PF06062 Uncharacterised protein family (UPF0231) E3397_RS18395 PF00330 Aconitase family (aconitate hydratase) E3397_RS18395 PF11791 Aconitate B N-terminal domain E3397_RS18395 PF06434 Aconitate hydratase 2 N-terminus E3397_RS18425 PF06434 Aconitate hydratase 2 N-terminus E3397_RS18425 PF11791 Aconitate B N-terminal domain E3397_RS18425 PF00330 Aconitase family (aconitate hydratase) E3397_RS18430 PF11737 Protein of unknown function (DUF3300) E3397_RS18445 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS18445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3397_RS18450 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3397_RS18450 PF02817 e3 binding domain E3397_RS18450 PF00364 Biotin-requiring enzyme E3397_RS18455 PF00456 Transketolase, thiamine diphosphate binding domain E3397_RS18455 PF17831 Pyruvate dehydrogenase E1 component middle domain E3397_RS18460 PF07729 FCD domain E3397_RS18460 PF00392 Bacterial regulatory proteins, gntR family E3397_RS18465 PF00324 Amino acid permease E3397_RS18475 PF04616 Glycosyl hydrolases family 43 E3397_RS18475 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain E3397_RS18480 PF17113 Regulatory signalling modulator protein AmpE E3397_RS18485 PF01510 N-acetylmuramoyl-L-alanine amidase E3397_RS18490 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain E3397_RS18490 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain E3397_RS18500 PF07963 Prokaryotic N-terminal methylation motif E3397_RS18505 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain E3397_RS18505 PF00437 Type II/IV secretion system protein E3397_RS18510 PF00482 Type II secretion system (T2SS), protein F E3397_RS18515 PF00478 IMP dehydrogenase / GMP reductase domain E3397_RS18520 PF01121 Dephospho-CoA kinase E3397_RS18525 PF07072 Cell division protein E3397_RS18530 PF03884 DNA gyrase inhibitor YacG E3397_RS18545 PF00293 NUDIX domain E3397_RS18550 PF07516 SecA Wing and Scaffold domain E3397_RS18550 PF01043 SecA preprotein cross-linking domain E3397_RS18550 PF07517 SecA DEAD-like domain E3397_RS18550 PF02810 SEC-C motif E3397_RS18555 PF06558 Secretion monitor precursor protein (SecM) E3397_RS18560 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase E3397_RS18565 PF12327 FtsZ family, C-terminal domain E3397_RS18565 PF00091 Tubulin/FtsZ family, GTPase domain E3397_RS18570 PF02491 SHS2 domain inserted in FTSA E3397_RS18575 PF08478 POTRA domain, FtsQ-type E3397_RS18575 PF03799 Cell division protein FtsQ E3397_RS18580 PF07478 D-ala D-ala ligase C-terminus E3397_RS18580 PF01820 D-ala D-ala ligase N-terminus E3397_RS18585 PF01225 Mur ligase family, catalytic domain E3397_RS18585 PF02875 Mur ligase family, glutamate ligase domain E3397_RS18585 PF08245 Mur ligase middle domain E3397_RS18590 PF03033 Glycosyltransferase family 28 N-terminal domain E3397_RS18590 PF04101 Glycosyltransferase family 28 C-terminal domain E3397_RS18595 PF01098 Cell cycle protein E3397_RS18600 PF02875 Mur ligase family, glutamate ligase domain E3397_RS18600 PF08245 Mur ligase middle domain E3397_RS18605 PF00953 Glycosyl transferase family 4 E3397_RS18605 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 E3397_RS18610 PF01225 Mur ligase family, catalytic domain E3397_RS18610 PF08245 Mur ligase middle domain E3397_RS18610 PF02875 Mur ligase family, glutamate ligase domain E3397_RS18615 PF01225 Mur ligase family, catalytic domain E3397_RS18615 PF08245 Mur ligase middle domain E3397_RS18615 PF02875 Mur ligase family, glutamate ligase domain E3397_RS18620 PF03717 Penicillin-binding Protein dimerisation domain E3397_RS18620 PF00905 Penicillin binding protein transpeptidase domain E3397_RS18625 PF04999 Cell division protein FtsL E3397_RS18630 PF01795 MraW methylase family E3397_RS18635 PF02381 MraZ protein, putative antitoxin-like E3397_RS18640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E3397_RS18640 PF00356 Bacterial regulatory proteins, lacI family E3397_RS18645 PF10369 Small subunit of acetolactate synthase E3397_RS18650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3397_RS18650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3397_RS18650 PF00205 Thiamine pyrophosphate enzyme, central domain E3397_RS18655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS18655 PF03466 LysR substrate binding domain E3397_RS18660 PF08054 Leucine operon leader peptide E3397_RS18665 PF08502 LeuA allosteric (dimerisation) domain E3397_RS18665 PF00682 HMGL-like E3397_RS18670 PF00180 Isocitrate/isopropylmalate dehydrogenase E3397_RS18675 PF00330 Aconitase family (aconitate hydratase) E3397_RS18680 PF00694 Aconitase C-terminal domain E3397_RS18690 PF12793 Sugar transport-related sRNA regulator N-term E3397_RS18690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3397_RS18700 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS18705 PF00005 ABC transporter E3397_RS18710 PF09335 SNARE associated Golgi protein E3397_RS18715 PF12833 Helix-turn-helix domain E3397_RS18715 PF02311 AraC-like ligand binding domain E3397_RS18720 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3397_RS18725 PF02610 L-arabinose isomerase E3397_RS18725 PF11762 L-arabinose isomerase C-terminal domain E3397_RS18730 PF00596 Class II Aldolase and Adducin N-terminal domain E3397_RS18750 PF00136 DNA polymerase family B E3397_RS18750 PF03104 DNA polymerase family B, exonuclease domain E3397_RS18755 PF18339 RapA N-terminal Tudor like domain 1 E3397_RS18755 PF00176 SNF2 family N-terminal domain E3397_RS18755 PF12137 RNA polymerase recycling family C-terminal E3397_RS18755 PF00271 Helicase conserved C-terminal domain E3397_RS18755 PF18337 RapA N-terminal Tudor like domain E3397_RS18760 PF00849 RNA pseudouridylate synthase E3397_RS18765 PF00226 DnaJ domain E3397_RS18765 PF05099 Tellurite resistance protein TerB E3397_RS18770 PF03968 OstA-like protein E3397_RS18770 PF04453 LPS transport system D E3397_RS18775 PF00639 PPIC-type PPIASE domain E3397_RS18775 PF09312 SurA N-terminal domain E3397_RS18780 PF04166 Pyridoxal phosphate biosynthetic protein PdxA E3397_RS18785 PF00398 Ribosomal RNA adenine dimethylase E3397_RS18790 PF04379 ApaG domain E3397_RS18795 PF00149 Calcineurin-like phosphoesterase E3397_RS18800 PF00186 Dihydrofolate reductase E3397_RS18805 PF02254 TrkA-N domain E3397_RS18805 PF00999 Sodium/hydrogen exchanger family E3397_RS18810 PF02525 Flavodoxin-like fold E3397_RS18815 PF00884 Sulfatase E3397_RS18835 PF06004 Bacterial protein of unknown function (DUF903) E3397_RS18840 PF00083 Sugar (and other) transporter E3397_RS18850 PF01494 FAD binding domain E3397_RS18855 PF00766 Electron transfer flavoprotein FAD-binding domain E3397_RS18855 PF01012 Electron transfer flavoprotein domain E3397_RS18860 PF01012 Electron transfer flavoprotein domain E3397_RS18870 PF02028 BCCT, betaine/carnitine/choline family transporter E3397_RS18875 PF02770 Acyl-CoA dehydrogenase, middle domain E3397_RS18875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3397_RS18875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3397_RS18880 PF02515 CoA-transferase family III E3397_RS18885 PF00501 AMP-binding enzyme E3397_RS18885 PF13193 AMP-binding enzyme C-terminal domain E3397_RS18890 PF00378 Enoyl-CoA hydratase/isomerase E3397_RS18895 PF00132 Bacterial transferase hexapeptide (six repeats) E3397_RS18900 PF07180 CaiF/GrlA transcriptional regulator E3397_RS18905 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain E3397_RS18905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3397_RS18905 PF02142 MGS-like domain E3397_RS18910 PF00117 Glutamine amidotransferase class-I E3397_RS18910 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain E3397_RS18920 PF05173 Dihydrodipicolinate reductase, C-terminus E3397_RS18920 PF01113 Dihydrodipicolinate reductase, N-terminus E3397_RS18925 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase E3397_RS18930 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase E3397_RS18935 PF04223 Citrate lyase, alpha subunit (CitF) E3397_RS18940 PF03328 HpcH/HpaI aldolase/citrate lyase family E3397_RS18945 PF06857 Malonate decarboxylase delta subunit (MdcD) E3397_RS18950 PF08218 Citrate lyase ligase C-terminal domain E3397_RS18950 PF00583 Acetyltransferase (GNAT) family E3397_RS18955 PF03390 2-hydroxycarboxylate transporter family E3397_RS18960 PF04277 Oxaloacetate decarboxylase, gamma chain E3397_RS18965 PF00682 HMGL-like E3397_RS18965 PF02436 Conserved carboxylase domain E3397_RS18965 PF00364 Biotin-requiring enzyme E3397_RS18970 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit E3397_RS18975 PF17203 Single cache domain 3 E3397_RS18975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS18980 PF12431 Transcriptional regulator E3397_RS18980 PF00072 Response regulator receiver domain E3397_RS18985 PF01156 Inosine-uridine preferring nucleoside hydrolase E3397_RS18995 PF02401 LytB protein E3397_RS19000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3397_RS19005 PF01252 Signal peptidase (SPase) II E3397_RS19010 PF06827 Zinc finger found in FPG and IleRS E3397_RS19010 PF08264 Anticodon-binding domain of tRNA E3397_RS19010 PF00133 tRNA synthetases class I (I, L, M and V) E3397_RS19015 PF01687 Riboflavin kinase E3397_RS19015 PF06574 FAD synthetase E3397_RS19020 PF10837 Protein of unknown function (DUF2575) E3397_RS19025 PF01649 Ribosomal protein S20 E3397_RS19035 PF01055 Glycosyl hydrolases family 31 E3397_RS19040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS19040 PF03466 LysR substrate binding domain E3397_RS19045 PF06965 Na+/H+ antiporter 1 E3397_RS19060 PF04055 Radical SAM superfamily E3397_RS19060 PF13186 Iron-sulfur cluster-binding domain E3397_RS19065 PF00884 Sulfatase E3397_RS19065 PF16385 Domain of unknown function E3397_RS19075 PF00149 Calcineurin-like phosphoesterase E3397_RS19075 PF02872 5'-nucleotidase, C-terminal domain E3397_RS19090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS19090 PF03466 LysR substrate binding domain E3397_RS19110 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS19110 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS19115 PF16970 Type-1 fimbrial protein, A E3397_RS19120 PF00419 Fimbrial protein E3397_RS19125 PF00419 Fimbrial protein E3397_RS19130 PF13953 PapC C-terminal domain E3397_RS19130 PF13954 PapC N-terminal domain E3397_RS19130 PF00577 Outer membrane usher protein E3397_RS19135 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS19135 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS19140 PF00419 Fimbrial protein E3397_RS19155 PF00704 Glycosyl hydrolases family 18 E3397_RS19175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS19175 PF03466 LysR substrate binding domain E3397_RS19180 PF00226 DnaJ domain E3397_RS19180 PF01556 DnaJ C terminal domain E3397_RS19180 PF00684 DnaJ central domain E3397_RS19185 PF00012 Hsp70 protein E3397_RS19190 PF10807 Protein of unknown function (DUF2541) E3397_RS19195 PF13099 Domain of unknown function (DUF3944) E3397_RS19195 PF03981 Ubiquinol-cytochrome C chaperone E3397_RS19200 PF01184 GPR1/FUN34/yaaH family E3397_RS19205 PF00994 Probable molybdopterin binding domain E3397_RS19210 PF00923 Transaldolase/Fructose-6-phosphate aldolase E3397_RS19215 PF01235 Sodium:alanine symporter family E3397_RS19220 PF03883 Peroxide stress protein YaaA E3397_RS19225 PF14821 Threonine synthase N terminus E3397_RS19225 PF00291 Pyridoxal-phosphate dependent enzyme E3397_RS19230 PF00288 GHMP kinases N terminal domain E3397_RS19230 PF08544 GHMP kinases C terminal E3397_RS19235 PF03447 Homoserine dehydrogenase, NAD binding domain E3397_RS19235 PF00742 Homoserine dehydrogenase E3397_RS19235 PF00696 Amino acid kinase family E3397_RS19235 PF01842 ACT domain E3397_RS19235 PF13840 ACT domain E3397_RS19240 PF08254 Threonine leader peptide E3397_RS19245 PF00588 SpoU rRNA Methylase family E3397_RS19255 PF00072 Response regulator receiver domain E3397_RS19255 PF00486 Transcriptional regulatory protein, C terminal E3397_RS19265 PF15977 Winged helix-turn-helix DNA binding E3397_RS19275 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS19275 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS19280 PF13953 PapC C-terminal domain E3397_RS19280 PF13954 PapC N-terminal domain E3397_RS19280 PF00577 Outer membrane usher protein E3397_RS19295 PF06123 Inner membrane protein CreD E3397_RS19300 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS19300 PF00672 HAMP domain E3397_RS19300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS19305 PF00072 Response regulator receiver domain E3397_RS19305 PF00486 Transcriptional regulatory protein, C terminal E3397_RS19310 PF05981 CreA protein E3397_RS19315 PF06445 GyrI-like small molecule binding domain E3397_RS19315 PF12833 Helix-turn-helix domain E3397_RS19320 PF00300 Histidine phosphatase superfamily (branch 1) E3397_RS19325 PF01931 Protein of unknown function DUF84 E3397_RS19330 PF01371 Trp repressor protein E3397_RS19335 PF14718 Soluble lytic murein transglycosylase L domain E3397_RS19335 PF01464 Transglycosylase SLT domain E3397_RS19340 PF00005 ABC transporter E3397_RS19340 PF12848 ABC transporter E3397_RS19345 PF13521 AAA domain E3397_RS19345 PF01381 Helix-turn-helix E3397_RS19350 PF18073 Rubredoxin metal binding domain E3397_RS19355 PF18429 Domain of unknown function (DUF5609) E3397_RS19360 PF10144 Bacterial virulence factor haemolysin E3397_RS19365 PF10437 Bacterial lipoate protein ligase C-terminus E3397_RS19365 PF03099 Biotin/lipoate A/B protein ligase family E3397_RS19375 PF06551 Protein of unknown function (DUF1120) E3397_RS19380 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS19385 PF13954 PapC N-terminal domain E3397_RS19385 PF00577 Outer membrane usher protein E3397_RS19385 PF13953 PapC C-terminal domain E3397_RS19395 PF01048 Phosphorylase superfamily E3397_RS19400 PF01676 Metalloenzyme superfamily E3397_RS19405 PF02885 Glycosyl transferase family, helical bundle domain E3397_RS19405 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain E3397_RS19405 PF00591 Glycosyl transferase family, a/b domain E3397_RS19410 PF01791 DeoC/LacD family aldolase E3397_RS19415 PF11230 Protein of unknown function (DUF3029) E3397_RS19420 PF04055 Radical SAM superfamily E3397_RS19425 PF01026 TatD related DNase E3397_RS19430 PF01734 Patatin-like phospholipase E3397_RS19435 PF07043 Protein of unknown function (DUF1328) E3397_RS19440 PF04972 BON domain E3397_RS19445 PF03144 Elongation factor Tu domain 2 E3397_RS19445 PF00009 Elongation factor Tu GTP binding domain E3397_RS19445 PF16658 Class II release factor RF3, C-terminal domain E3397_RS19450 PF13419 Haloacid dehalogenase-like hydrolase E3397_RS19455 PF00583 Acetyltransferase (GNAT) family E3397_RS19460 PF03603 DNA polymerase III psi subunit E3397_RS19465 PF05175 Methyltransferase small domain E3397_RS19465 PF08468 Methyltransferase small domain N-terminal E3397_RS19485 PF07256 Protein of unknown function (DUF1435) E3397_RS19490 PF00990 Diguanylate cyclase, GGDEF domain E3397_RS19490 PF05230 MASE2 domain E3397_RS19495 PF06276 Ferric iron reductase FhuF-like transporter E3397_RS19495 PF11575 FhuF 2Fe-2S C-terminal domain E3397_RS19500 PF04073 Aminoacyl-tRNA editing domain E3397_RS19505 PF00196 Bacterial regulatory proteins, luxR family E3397_RS19510 PF00196 Bacterial regulatory proteins, luxR family E3397_RS19515 PF06738 Putative threonine/serine exporter E3397_RS19520 PF12821 Threonine/Serine exporter, ThrE E3397_RS19525 PF17948 DnaT DNA-binding domain E3397_RS19530 PF01695 IstB-like ATP binding protein E3397_RS19535 PF10696 Protein of unknown function (DUF2501) E3397_RS19540 PF00884 Sulfatase E3397_RS19545 PF00672 HAMP domain E3397_RS19545 PF02203 Tar ligand binding domain homologue E3397_RS19545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3397_RS19550 PF02554 Carbon starvation protein CstA E3397_RS19550 PF13722 5TM C-terminal transporter carbon starvation CstA E3397_RS19555 PF04328 Selenoprotein, putative E3397_RS19560 PF07683 Cobalamin synthesis protein cobW C-terminal domain E3397_RS19560 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3397_RS19595 PF02384 N-6 DNA Methylase E3397_RS19595 PF12161 HsdM N-terminal domain E3397_RS19605 PF02384 N-6 DNA Methylase E3397_RS19610 PF01420 Type I restriction modification DNA specificity domain E3397_RS19615 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) E3397_RS19615 PF18766 SWI2/SNF2 ATPase E3397_RS19615 PF11867 Domain of unknown function (DUF3387) E3397_RS19635 PF00171 Aldehyde dehydrogenase family E3397_RS19640 PF04754 Putative transposase, YhgA-like E3397_RS19645 PF07690 Major Facilitator Superfamily E3397_RS19650 PF04286 Protein of unknown function (DUF445) E3397_RS19655 PF06779 Uncharacterised MFS-type transporter YbfB E3397_RS19660 PF07670 Nucleoside recognition E3397_RS19665 PF07670 Nucleoside recognition E3397_RS19670 PF01979 Amidohydrolase family E3397_RS19675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS19675 PF03466 LysR substrate binding domain E3397_RS19680 PF01177 Asp/Glu/Hydantoin racemase E3397_RS19690 PF00579 tRNA synthetases class I (W and Y) E3397_RS19695 PF00392 Bacterial regulatory proteins, gntR family E3397_RS19695 PF07729 FCD domain E3397_RS19700 PF01738 Dienelactone hydrolase family E3397_RS19705 PF03625 Domain of unknown function DUF302 E3397_RS19705 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E3397_RS19725 PF09857 Putative toxin of bacterial toxin-antitoxin pair E3397_RS19730 PF13847 Methyltransferase domain E3397_RS19735 PF01709 Transcriptional regulator E3397_RS19765 PF17345 Family of unknown function (DUF5375) E3397_RS19795 PF04606 Ogr/Delta-like zinc finger E3397_RS19810 PF09225 Restriction endonuclease PvuII E3397_RS19815 PF01381 Helix-turn-helix E3397_RS19820 PF01555 DNA methylase E3397_RS19825 PF13356 Arm DNA-binding domain E3397_RS19825 PF00589 Phage integrase family E3397_RS19835 PF00107 Zinc-binding dehydrogenase E3397_RS19835 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS19840 PF01202 Shikimate kinase E3397_RS19845 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS19845 PF00107 Zinc-binding dehydrogenase E3397_RS19850 PF00106 short chain dehydrogenase E3397_RS19855 PF02447 GntP family permease E3397_RS19860 PF00356 Bacterial regulatory proteins, lacI family E3397_RS19865 PF03739 Lipopolysaccharide export system permease LptF/LptG E3397_RS19870 PF03739 Lipopolysaccharide export system permease LptF/LptG E3397_RS19875 PF00883 Cytosol aminopeptidase family, catalytic domain E3397_RS19875 PF02789 Cytosol aminopeptidase family, N-terminal domain E3397_RS19880 PF04364 DNA polymerase III chi subunit, HolC E3397_RS19885 PF10458 Valyl tRNA synthetase tRNA binding arm E3397_RS19885 PF00133 tRNA synthetases class I (I, L, M and V) E3397_RS19885 PF08264 Anticodon-binding domain of tRNA E3397_RS19890 PF05987 Bacterial protein of unknown function (DUF898) E3397_RS19895 PF00583 Acetyltransferase (GNAT) family E3397_RS19905 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) E3397_RS19910 PF06877 Regulator of ribonuclease activity B E3397_RS19915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3397_RS19915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3397_RS19920 PF04074 YhcH/YjgK/YiaL E3397_RS19930 PF00696 Amino acid kinase family E3397_RS19935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3397_RS19935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3397_RS19940 PF03606 C4-dicarboxylate anaerobic carrier E3397_RS19945 PF02863 Arginine repressor, C-terminal domain E3397_RS19945 PF01316 Arginine repressor, DNA binding domain E3397_RS19955 PF08052 PyrBI operon leader peptide E3397_RS19960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3397_RS19960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3397_RS19965 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain E3397_RS19965 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain E3397_RS19970 PF01042 Endoribonuclease L-PSP E3397_RS19975 PF00690 Cation transporter/ATPase, N-terminus E3397_RS19975 PF00689 Cation transporting ATPase, C-terminus E3397_RS19980 PF17059 MgtA leader peptide E3397_RS19985 PF00356 Bacterial regulatory proteins, lacI family E3397_RS19990 PF02378 Phosphotransferase system, EIIC E3397_RS19990 PF00367 phosphotransferase system, EIIB E3397_RS19995 PF00128 Alpha amylase, catalytic domain E3397_RS19995 PF11941 Domain of unknown function (DUF3459) E3397_RS20000 PF13597 Anaerobic ribonucleoside-triphosphate reductase E3397_RS20000 PF03477 ATP cone domain E3397_RS20010 PF05016 ParE toxin of type II toxin-antitoxin system, parDE E3397_RS20015 PF04221 RelB antitoxin E3397_RS20020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3397_RS20020 PF08279 HTH domain E3397_RS20020 PF05043 Mga helix-turn-helix domain E3397_RS20020 PF00874 PRD domain E3397_RS20025 PF07071 KDGP aldolase E3397_RS20030 PF03841 L-seryl-tRNA selenium transferase E3397_RS20035 PF01979 Amidohydrolase family E3397_RS20065 PF07361 Cytochrome b562 E3397_RS20070 PF01523 Putative modulator of DNA gyrase E3397_RS20075 PF04751 Protein of unknown function (DUF615) E3397_RS20080 PF01261 Xylose isomerase-like TIM barrel E3397_RS20090 PF07690 Major Facilitator Superfamily E3397_RS20095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3397_RS20095 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3397_RS20100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3397_RS20100 PF00205 Thiamine pyrophosphate enzyme, central domain E3397_RS20100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3397_RS20105 PF00294 pfkB family carbohydrate kinase E3397_RS20110 PF07690 Major Facilitator Superfamily E3397_RS20115 PF01261 Xylose isomerase-like TIM barrel E3397_RS20120 PF17189 Glycosyl hydrolase family 30 beta sandwich domain E3397_RS20125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3397_RS20125 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3397_RS20130 PF01261 Xylose isomerase-like TIM barrel E3397_RS20145 PF00171 Aldehyde dehydrogenase family E3397_RS20150 PF04962 KduI/IolB family E3397_RS20155 PF00083 Sugar (and other) transporter E3397_RS20160 PF00083 Sugar (and other) transporter E3397_RS20165 PF02685 Glucokinase E3397_RS20165 PF01418 Helix-turn-helix domain, rpiR family E3397_RS20165 PF01380 SIS domain E3397_RS20170 PF08245 Mur ligase middle domain E3397_RS20170 PF02875 Mur ligase family, glutamate ligase domain E3397_RS20170 PF01225 Mur ligase family, catalytic domain E3397_RS20175 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain E3397_RS20180 PF00719 Inorganic pyrophosphatase E3397_RS20185 PF01979 Amidohydrolase family E3397_RS20190 PF07690 Major Facilitator Superfamily E3397_RS20195 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like E3397_RS20200 PF04357 TamB, inner membrane protein subunit of TAM complex E3397_RS20205 PF01103 Surface antigen E3397_RS20205 PF07244 Surface antigen variable number repeat E3397_RS20205 PF17243 POTRA domain TamA domain 1 E3397_RS20210 PF01625 Peptide methionine sulfoxide reductase E3397_RS20215 PF00571 CBS domain E3397_RS20215 PF01595 Cyclin M transmembrane N-terminal domain E3397_RS20215 PF03471 Transporter associated domain E3397_RS20220 PF06526 Protein of unknown function (DUF1107) E3397_RS20225 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) E3397_RS20230 PF00459 Inositol monophosphatase family E3397_RS20235 PF02872 5'-nucleotidase, C-terminal domain E3397_RS20235 PF00149 Calcineurin-like phosphoesterase E3397_RS20240 PF01638 HxlR-like helix-turn-helix E3397_RS20245 PF05368 NmrA-like family E3397_RS20250 PF00892 EamA-like transporter family E3397_RS20255 PF04405 Domain of Unknown function (DUF542) E3397_RS20255 PF01814 Hemerythrin HHE cation binding domain E3397_RS20260 PF00324 Amino acid permease E3397_RS20265 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E3397_RS20265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3397_RS20270 PF04225 Opacity-associated protein A LysM-like domain E3397_RS20270 PF08525 Opacity-associated protein A N-terminal motif E3397_RS20280 PF03948 Ribosomal protein L9, C-terminal domain E3397_RS20280 PF01281 Ribosomal protein L9, N-terminal domain E3397_RS20285 PF01084 Ribosomal protein S18 E3397_RS20290 PF00436 Single-strand binding protein family E3397_RS20295 PF01250 Ribosomal protein S6 E3397_RS20310 PF07338 Protein of unknown function (DUF1471) E3397_RS20315 PF00596 Class II Aldolase and Adducin N-terminal domain E3397_RS20320 PF01261 Xylose isomerase-like TIM barrel E3397_RS20325 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E3397_RS20330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3397_RS20335 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3397_RS20340 PF03611 PTS system sugar-specific permease component E3397_RS20350 PF00455 DeoR C terminal sensor domain E3397_RS20350 PF08220 DeoR-like helix-turn-helix domain E3397_RS20355 PF00326 Prolyl oligopeptidase family E3397_RS20360 PF07338 Protein of unknown function (DUF1471) E3397_RS20365 PF07338 Protein of unknown function (DUF1471) E3397_RS20370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3397_RS20370 PF02770 Acyl-CoA dehydrogenase, middle domain E3397_RS20370 PF18158 Adaptive response protein AidB N-terminal domain E3397_RS20375 PF03738 Glutathionylspermidine synthase preATP-grasp E3397_RS20380 PF06693 Protein of unknown function (DUF1190) E3397_RS20385 PF03994 Domain of Unknown Function (DUF350) E3397_RS20390 PF10679 Protein of unknown function (DUF2491) E3397_RS20400 PF04012 PspA/IM30 family E3397_RS20405 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) E3397_RS20410 PF08032 RNA 2'-O ribose methyltransferase substrate binding E3397_RS20410 PF00588 SpoU rRNA Methylase family E3397_RS20415 PF00773 RNB domain E3397_RS20415 PF00575 S1 RNA binding domain E3397_RS20415 PF08461 Ribonuclease R winged-helix domain E3397_RS20415 PF17876 Cold shock domain E3397_RS20415 PF08206 Ribonuclease B OB domain E3397_RS20420 PF02082 Transcriptional regulator E3397_RS20425 PF00709 Adenylosuccinate synthetase E3397_RS20430 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) E3397_RS20435 PF01145 SPFH domain / Band 7 family E3397_RS20440 PF12221 Bacterial membrane protein N terminal E3397_RS20440 PF01145 SPFH domain / Band 7 family E3397_RS20445 PF16360 GTP-binding GTPase Middle Region E3397_RS20445 PF13167 GTP-binding GTPase N-terminal E3397_RS20445 PF01926 50S ribosome-binding GTPase E3397_RS20450 PF17209 Hfq protein E3397_RS20460 PF08676 MutL C terminal dimerisation domain E3397_RS20460 PF01119 DNA mismatch repair protein, C-terminal domain E3397_RS20465 PF01520 N-acetylmuramoyl-L-alanine amidase E3397_RS20470 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E3397_RS20475 PF01256 Carbohydrate kinase E3397_RS20475 PF03853 YjeF-related protein N-terminus E3397_RS20480 PF08331 Domain of unknown function (DUF1730) E3397_RS20500 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3397_RS20505 PF00929 Exonuclease E3397_RS20510 PF03193 RsgA GTPase E3397_RS20515 PF02666 Phosphatidylserine decarboxylase E3397_RS20520 PF00924 Mechanosensitive ion channel E3397_RS20520 PF12794 Mechanosensitive ion channel inner membrane domain 1 E3397_RS20520 PF12795 Mechanosensitive ion channel porin domain E3397_RS20525 PF10840 Protein of unknown function (DUF2645) E3397_RS20530 PF13520 Amino acid permease E3397_RS20535 PF00152 tRNA synthetases class II (D, K and N) E3397_RS20540 PF00890 FAD binding domain E3397_RS20540 PF02910 Fumarate reductase flavoprotein C-term E3397_RS20545 PF13183 4Fe-4S dicluster domain E3397_RS20545 PF13085 2Fe-2S iron-sulfur cluster binding domain E3397_RS20550 PF02300 Fumarate reductase subunit C E3397_RS20555 PF02313 Fumarate reductase subunit D E3397_RS20560 PF08212 Lipocalin-like domain E3397_RS20565 PF00893 Small Multidrug Resistance protein E3397_RS20570 PF00196 Bacterial regulatory proteins, luxR family E3397_RS20575 PF08085 Entericidin EcnA/B family E3397_RS20580 PF08085 Entericidin EcnA/B family E3397_RS20585 PF08207 Elongation factor P (EF-P) KOW-like domain E3397_RS20585 PF09285 Elongation factor P, C-terminal E3397_RS20585 PF01132 Elongation factor P (EF-P) OB domain E3397_RS20590 PF04055 Radical SAM superfamily E3397_RS20595 PF15922 YjeJ-like E3397_RS20600 PF13698 Domain of unknown function (DUF4156) E3397_RS20605 PF00118 TCP-1/cpn60 chaperonin family E3397_RS20610 PF00166 Chaperonin 10 Kd subunit E3397_RS20615 PF13520 Amino acid permease E3397_RS20620 PF04186 FxsA cytoplasmic membrane protein E3397_RS20625 PF10415 Fumarase C C-terminus E3397_RS20625 PF00206 Lyase E3397_RS20630 PF03605 Anaerobic c4-dicarboxylate membrane transporter E3397_RS20635 PF03091 CutA1 divalent ion tolerance protein E3397_RS20640 PF02683 Cytochrome C biogenesis protein transmembrane region E3397_RS20640 PF11412 Disulphide bond corrector protein DsbC E3397_RS20660 PF01569 PAP2 superfamily E3397_RS20665 PF06977 SdiA-regulated E3397_RS20690 PF02432 Fimbrial, major and minor subunit E3397_RS20705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS20710 PF00577 Outer membrane usher protein E3397_RS20710 PF13954 PapC N-terminal domain E3397_RS20720 PF03333 Adhesin biosynthesis transcription regulatory protein E3397_RS20750 PF12833 Helix-turn-helix domain E3397_RS20755 PF00072 Response regulator receiver domain E3397_RS20755 PF00196 Bacterial regulatory proteins, luxR family E3397_RS20770 PF06977 SdiA-regulated E3397_RS20780 PF02613 Nitrate reductase delta subunit E3397_RS20785 PF04976 DMSO reductase anchor subunit (DmsC) E3397_RS20790 PF12800 4Fe-4S binding domain E3397_RS20790 PF13247 4Fe-4S dicluster domain E3397_RS20795 PF00384 Molybdopterin oxidoreductase E3397_RS20795 PF01568 Molydopterin dinucleotide binding domain E3397_RS20795 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3397_RS20800 PF17203 Single cache domain 3 E3397_RS20800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS20800 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain E3397_RS20800 PF00989 PAS fold E3397_RS20805 PF00072 Response regulator receiver domain E3397_RS20815 PF03605 Anaerobic c4-dicarboxylate membrane transporter E3397_RS20820 PF05681 Fumarate hydratase (Fumerase) E3397_RS20820 PF05683 Fumarase C-terminus E3397_RS20830 PF02056 Family 4 glycosyl hydrolase E3397_RS20830 PF11975 Family 4 glycosyl hydrolase C-terminal domain E3397_RS20835 PF12833 Helix-turn-helix domain E3397_RS20840 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain E3397_RS20840 PF01276 Orn/Lys/Arg decarboxylase, major domain E3397_RS20840 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain E3397_RS20845 PF12833 Helix-turn-helix domain E3397_RS20850 PF13520 Amino acid permease E3397_RS20855 PF08019 Phosphoethanolamine transferase EptA/EptB E3397_RS20855 PF00884 Sulfatase E3397_RS20860 PF00072 Response regulator receiver domain E3397_RS20860 PF00486 Transcriptional regulatory protein, C terminal E3397_RS20865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS20865 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS20875 PF00083 Sugar (and other) transporter E3397_RS20875 PF08946 Osmosensory transporter coiled coil E3397_RS20880 PF08274 PhnA Zinc-Ribbon E3397_RS20880 PF03831 PhnA domain E3397_RS20885 PF06983 3-demethylubiquinone-9 3-methyltransferase E3397_RS20890 PF00583 Acetyltransferase (GNAT) family E3397_RS20905 PF08238 Sel1 repeat E3397_RS20910 PF00375 Sodium:dicarboxylate symporter family E3397_RS20920 PF03918 Cytochrome C biogenesis protein E3397_RS20925 PF01578 Cytochrome C assembly protein E3397_RS20925 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E3397_RS20930 PF03916 Polysulphide reductase, NrfD E3397_RS20935 PF00037 4Fe-4S binding domain E3397_RS20935 PF13247 4Fe-4S dicluster domain E3397_RS20940 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) E3397_RS20940 PF13435 Cytochrome c554 and c-prime E3397_RS20945 PF02335 Cytochrome c552 E3397_RS20950 PF00501 AMP-binding enzyme E3397_RS20950 PF16177 Acetyl-coenzyme A synthetase N-terminus E3397_RS20950 PF13193 AMP-binding enzyme C-terminal domain E3397_RS20955 PF04341 Protein of unknown function, DUF485 E3397_RS20960 PF00474 Sodium:solute symporter family E3397_RS20965 PF04172 LrgB-like family E3397_RS20970 PF03788 LrgA family E3397_RS20975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS20975 PF03466 LysR substrate binding domain E3397_RS20980 PF00999 Sodium/hydrogen exchanger family E3397_RS20985 PF00860 Permease family E3397_RS20995 PF09278 MerR, DNA binding E3397_RS20995 PF00376 MerR family regulatory protein E3397_RS21000 PF12833 Helix-turn-helix domain E3397_RS21005 PF12792 CSS motif domain associated with EAL E3397_RS21005 PF00563 EAL domain E3397_RS21010 PF15940 Family of unknown function E3397_RS21015 PF00664 ABC transporter transmembrane region E3397_RS21015 PF00005 ABC transporter E3397_RS21045 PF00436 Single-strand binding protein family E3397_RS21050 PF17760 UvrA interaction domain E3397_RS21050 PF17755 UvrA DNA-binding domain E3397_RS21050 PF00005 ABC transporter E3397_RS21065 PF04237 YjbR E3397_RS21070 PF01894 Uncharacterised protein family UPF0047 E3397_RS21075 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) E3397_RS21080 PF00155 Aminotransferase class I and II E3397_RS21085 PF01168 Alanine racemase, N-terminal domain E3397_RS21085 PF00842 Alanine racemase, C-terminal domain E3397_RS21090 PF03796 DnaB-like helicase C terminal domain E3397_RS21090 PF00772 DnaB-like helicase N terminal domain E3397_RS21095 PF08240 Alcohol dehydrogenase GroES-like domain E3397_RS21095 PF00107 Zinc-binding dehydrogenase E3397_RS21100 PF09583 Phage shock protein G (Phageshock_PspG) E3397_RS21105 PF01207 Dihydrouridine synthase (Dus) E3397_RS21115 PF01475 Ferric uptake regulator family E3397_RS21120 PF05532 CsbD-like E3397_RS21130 PF01554 MatE E3397_RS21135 PF01726 LexA DNA binding domain E3397_RS21135 PF00717 Peptidase S24-like E3397_RS21140 PF01219 Prokaryotic diacylglycerol kinase E3397_RS21145 PF01553 Acyltransferase E3397_RS21150 PF01040 UbiA prenyltransferase family E3397_RS21155 PF04345 Chorismate lyase E3397_RS21160 PF07148 Maltose operon periplasmic protein precursor (MalM) E3397_RS21165 PF02264 LamB porin E3397_RS21170 PF00005 ABC transporter E3397_RS21170 PF17912 MalK OB fold domain E3397_RS21180 PF01547 Bacterial extracellular solute-binding protein E3397_RS21185 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS21185 PF14785 Maltose transport system permease protein MalF P2 domain E3397_RS21190 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS21195 PF06146 Phosphate-starvation-inducible E E3397_RS21200 PF06082 Exopolysaccharide biosynthesis protein YbjH E3397_RS21205 PF06251 Capsule biosynthesis GfcC E3397_RS21210 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF E3397_RS21220 PF00342 Phosphoglucose isomerase E3397_RS21225 PF01842 ACT domain E3397_RS21225 PF00696 Amino acid kinase family E3397_RS21230 PF08765 Mor transcription activator family E3397_RS21260 PF08220 DeoR-like helix-turn-helix domain E3397_RS21260 PF00455 DeoR C terminal sensor domain E3397_RS21265 PF11656 YjbD family (DUF3811) E3397_RS21270 PF00849 RNA pseudouridylate synthase E3397_RS21270 PF01479 S4 domain E3397_RS21275 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) E3397_RS21285 PF03575 Peptidase family S51 E3397_RS21290 PF02690 Na+/Pi-cotransporter E3397_RS21295 PF00809 Pterin binding enzyme E3397_RS21295 PF02965 Vitamin B12 dependent methionine synthase, activation domain E3397_RS21295 PF02607 B12 binding domain E3397_RS21295 PF02310 B12 binding domain E3397_RS21295 PF02574 Homocysteine S-methyltransferase E3397_RS21300 PF09339 IclR helix-turn-helix domain E3397_RS21300 PF01614 Bacterial transcriptional regulator E3397_RS21310 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) E3397_RS21315 PF00463 Isocitrate lyase family E3397_RS21320 PF01274 Malate synthase E3397_RS21325 PF04204 Homoserine O-succinyltransferase E3397_RS21330 PF13673 Acetyltransferase (GNAT) domain E3397_RS21355 PF02142 MGS-like domain E3397_RS21355 PF01808 AICARFT/IMPCHase bienzyme E3397_RS21360 PF02844 Phosphoribosylglycinamide synthetase, N domain E3397_RS21360 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain E3397_RS21360 PF02843 Phosphoribosylglycinamide synthetase, C domain E3397_RS21365 PF00158 Sigma-54 interaction domain E3397_RS21365 PF02954 Bacterial regulatory protein, Fis family E3397_RS21365 PF00072 Response regulator receiver domain E3397_RS21370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS21370 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS21375 PF13801 Heavy-metal resistance E3397_RS21380 PF07356 Protein of unknown function (DUF1481) E3397_RS21385 PF00216 Bacterial DNA-binding protein E3397_RS21390 PF04222 Protein of unknown function (DUF416) E3397_RS21395 PF04493 Endonuclease V E3397_RS21400 PF01208 Uroporphyrinogen decarboxylase (URO-D) E3397_RS21405 PF00293 NUDIX domain E3397_RS21405 PF09297 NADH pyrophosphatase zinc ribbon domain E3397_RS21410 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ E3397_RS21415 PF01964 Radical SAM ThiC family E3397_RS21415 PF13667 ThiC-associated domain E3397_RS21420 PF02581 Thiamine monophosphate synthase E3397_RS21425 PF00899 ThiF family E3397_RS21430 PF02597 ThiS family E3397_RS21435 PF05690 Thiazole biosynthesis protein ThiG E3397_RS21440 PF04055 Radical SAM superfamily E3397_RS21440 PF06968 Biotin and Thiamin Synthesis associated domain E3397_RS21465 PF04997 RNA polymerase Rpb1, domain 1 E3397_RS21465 PF04998 RNA polymerase Rpb1, domain 5 E3397_RS21465 PF00623 RNA polymerase Rpb1, domain 2 E3397_RS21465 PF04983 RNA polymerase Rpb1, domain 3 E3397_RS21465 PF05000 RNA polymerase Rpb1, domain 4 E3397_RS21470 PF04563 RNA polymerase beta subunit E3397_RS21470 PF04561 RNA polymerase Rpb2, domain 2 E3397_RS21470 PF04565 RNA polymerase Rpb2, domain 3 E3397_RS21470 PF10385 RNA polymerase beta subunit external 1 domain E3397_RS21470 PF00562 RNA polymerase Rpb2, domain 6 E3397_RS21470 PF04560 RNA polymerase Rpb2, domain 7 E3397_RS21475 PF16320 Ribosomal protein L7/L12 dimerisation domain E3397_RS21475 PF00542 Ribosomal protein L7/L12 C-terminal domain E3397_RS21480 PF00466 Ribosomal protein L10 E3397_RS21485 PF00687 Ribosomal protein L1p/L10e family E3397_RS21490 PF00298 Ribosomal protein L11, RNA binding domain E3397_RS21490 PF03946 Ribosomal protein L11, N-terminal domain E3397_RS21495 PF00467 KOW motif E3397_RS21495 PF02357 Transcription termination factor nusG E3397_RS21500 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E3397_RS21505 PF03143 Elongation factor Tu C-terminal domain E3397_RS21505 PF03144 Elongation factor Tu domain 2 E3397_RS21505 PF00009 Elongation factor Tu GTP binding domain E3397_RS21535 PF00485 Phosphoribulokinase / Uridine kinase family E3397_RS21540 PF08279 HTH domain E3397_RS21540 PF03099 Biotin/lipoate A/B protein ligase family E3397_RS21540 PF02237 Biotin protein ligase C terminal domain E3397_RS21545 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E3397_RS21545 PF01565 FAD binding domain E3397_RS21575 PF01177 Asp/Glu/Hydantoin racemase E3397_RS21580 PF07715 TonB-dependent Receptor Plug Domain E3397_RS21580 PF00593 TonB dependent receptor E3397_RS21585 PF05958 tRNA (Uracil-5-)-methyltransferase E3397_RS21590 PF07226 Protein of unknown function (DUF1422) E3397_RS21595 PF00440 Bacterial regulatory proteins, tetR family E3397_RS21600 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3397_RS21600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3397_RS21605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS21605 PF03466 LysR substrate binding domain E3397_RS21615 PF14698 Argininosuccinate lyase C-terminal E3397_RS21615 PF00206 Lyase E3397_RS21620 PF00696 Amino acid kinase family E3397_RS21625 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3397_RS21625 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3397_RS21630 PF07687 Peptidase dimerisation domain E3397_RS21630 PF01546 Peptidase family M20/M25/M40 E3397_RS21635 PF00311 Phosphoenolpyruvate carboxylase E3397_RS21640 PF00884 Sulfatase E3397_RS21645 PF12833 Helix-turn-helix domain E3397_RS21650 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3397_RS21655 PF04055 Radical SAM superfamily E3397_RS21660 PF02901 Pyruvate formate lyase-like E3397_RS21660 PF01228 Glycine radical E3397_RS21665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3397_RS21675 PF00391 PEP-utilising enzyme, mobile domain E3397_RS21675 PF00381 PTS HPr component phosphorylation site E3397_RS21675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3397_RS21675 PF05524 PEP-utilising enzyme, N-terminal E3397_RS21675 PF02896 PEP-utilising enzyme, TIM barrel domain E3397_RS21680 PF00923 Transaldolase/Fructose-6-phosphate aldolase E3397_RS21685 PF00465 Iron-containing alcohol dehydrogenase E3397_RS21690 PF06940 Domain of unknown function (DUF1287) E3397_RS21695 PF00141 Peroxidase E3397_RS21700 PF02219 Methylenetetrahydrofolate reductase E3397_RS21705 PF00149 Calcineurin-like phosphoesterase E3397_RS21705 PF17936 Bacterial Ig domain E3397_RS21705 PF02872 5'-nucleotidase, C-terminal domain E3397_RS21720 PF00924 Mechanosensitive ion channel E3397_RS21720 PF05552 Conserved TM helix E3397_RS21725 PF00696 Amino acid kinase family E3397_RS21725 PF00742 Homoserine dehydrogenase E3397_RS21725 PF03447 Homoserine dehydrogenase, NAD binding domain E3397_RS21730 PF01053 Cys/Met metabolism PLP-dependent enzyme E3397_RS21735 PF01340 Met Apo-repressor, MetJ E3397_RS21740 PF05935 Arylsulfotransferase (ASST) E3397_RS21740 PF17425 Arylsulfotransferase Ig-like domain E3397_RS21750 PF01197 Ribosomal protein L31 E3397_RS21755 PF00270 DEAD/DEAH box helicase E3397_RS21755 PF00271 Helicase conserved C-terminal domain E3397_RS21755 PF18074 Primosomal protein N C-terminal domain E3397_RS21755 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E3397_RS21755 PF17764 3′ DNA-binding domain (3′BD) E3397_RS21760 PF00356 Bacterial regulatory proteins, lacI family E3397_RS21765 PF05036 Sporulation related domain E3397_RS21770 PF00227 Proteasome subunit E3397_RS21775 PF00004 ATPase family associated with various cellular activities (AAA) E3397_RS21775 PF10431 C-terminal, D2-small domain, of ClpB protein E3397_RS21775 PF07724 AAA domain (Cdc48 subfamily) E3397_RS21780 PF01040 UbiA prenyltransferase family E3397_RS21785 PF03737 Aldolase/RraA E3397_RS21790 PF06005 Cell division protein ZapB E3397_RS21795 PF00230 Major intrinsic protein E3397_RS21800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3397_RS21800 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3397_RS21805 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded E3397_RS21810 PF00970 Oxidoreductase FAD-binding domain E3397_RS21810 PF00175 Oxidoreductase NAD-binding domain E3397_RS21815 PF05656 Protein of unknown function (DUF805) E3397_RS21820 PF07305 Protein of unknown function (DUF1454) E3397_RS21825 PF00121 Triosephosphate isomerase E3397_RS21830 PF00834 Ribulose-phosphate 3 epimerase family E3397_RS21835 PF03992 Antibiotic biosynthesis monooxygenase E3397_RS21840 PF01791 DeoC/LacD family aldolase E3397_RS21845 PF13407 Periplasmic binding protein domain E3397_RS21850 PF02653 Branched-chain amino acid transport system / permease component E3397_RS21855 PF02653 Branched-chain amino acid transport system / permease component E3397_RS21860 PF00005 ABC transporter E3397_RS21865 PF04198 Putative sugar-binding domain E3397_RS21870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3397_RS21870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3397_RS21880 PF02611 CDP-diacylglycerol pyrophosphatase E3397_RS21890 PF00155 Aminotransferase class I and II E3397_RS21890 PF00392 Bacterial regulatory proteins, gntR family E3397_RS21900 PF00294 pfkB family carbohydrate kinase E3397_RS21910 PF02611 CDP-diacylglycerol pyrophosphatase E3397_RS21920 PF00365 Phosphofructokinase E3397_RS21925 PF16916 Dimerisation domain of Zinc Transporter E3397_RS21925 PF01545 Cation efflux family E3397_RS21930 PF07813 LTXXQ motif family protein E3397_RS21935 PF00486 Transcriptional regulatory protein, C terminal E3397_RS21935 PF00072 Response regulator receiver domain E3397_RS21940 PF16527 Two-component sensor protein CpxA, periplasmic domain E3397_RS21940 PF00672 HAMP domain E3397_RS21940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS21940 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS21950 PF03473 MOSC domain E3397_RS21950 PF03475 3-alpha domain E3397_RS21955 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3397_RS21955 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3397_RS21960 PF03480 Bacterial extracellular solute-binding protein, family 7 E3397_RS21965 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component E3397_RS21970 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component E3397_RS21975 PF06178 Oligogalacturonate-specific porin protein (KdgM) E3397_RS21980 PF06379 L-rhamnose-proton symport protein (RhaT) E3397_RS21985 PF02311 AraC-like ligand binding domain E3397_RS21985 PF12833 Helix-turn-helix domain E3397_RS21990 PF12833 Helix-turn-helix domain E3397_RS21990 PF02311 AraC-like ligand binding domain E3397_RS21995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3397_RS21995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3397_RS22000 PF06134 L-rhamnose isomerase (RhaA) E3397_RS22005 PF00596 Class II Aldolase and Adducin N-terminal domain E3397_RS22010 PF00465 Iron-containing alcohol dehydrogenase E3397_RS22015 PF05336 L-rhamnose mutarotase E3397_RS22025 PF03591 AzlC protein E3397_RS22035 PF12889 Protein of unknown function (DUF3829) E3397_RS22040 PF12889 Protein of unknown function (DUF3829) E3397_RS22045 PF02634 FdhD/NarQ family E3397_RS22055 PF09163 Formate dehydrogenase N, transmembrane E3397_RS22055 PF13247 4Fe-4S dicluster domain E3397_RS22060 PF01292 Prokaryotic cytochrome b561 E3397_RS22065 PF04216 Protein involved in formate dehydrogenase formation E3397_RS22075 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system E3397_RS22080 PF07859 alpha/beta hydrolase fold E3397_RS22085 PF09500 Putative thioesterase (yiiD_Cterm) E3397_RS22085 PF00583 Acetyltransferase (GNAT) family E3397_RS22090 PF02580 D-Tyr-tRNA(Tyr) deacylase E3397_RS22095 PF03631 Virulence factor BrkB E3397_RS22100 PF13419 Haloacid dehalogenase-like hydrolase E3397_RS22105 PF00455 DeoR C terminal sensor domain E3397_RS22105 PF08220 DeoR-like helix-turn-helix domain E3397_RS22110 PF00294 pfkB family carbohydrate kinase E3397_RS22115 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3397_RS22115 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3397_RS22120 PF01791 DeoC/LacD family aldolase E3397_RS22130 PF01263 Aldose 1-epimerase E3397_RS22135 PF01055 Glycosyl hydrolases family 31 E3397_RS22150 PF06178 Oligogalacturonate-specific porin protein (KdgM) E3397_RS22170 PF04055 Radical SAM superfamily E3397_RS22185 PF03144 Elongation factor Tu domain 2 E3397_RS22185 PF00009 Elongation factor Tu GTP binding domain E3397_RS22185 PF00679 Elongation factor G C-terminus E3397_RS22190 PF03951 Glutamine synthetase, beta-Grasp domain E3397_RS22190 PF00120 Glutamine synthetase, catalytic domain E3397_RS22195 PF00512 His Kinase A (phospho-acceptor) domain E3397_RS22195 PF00989 PAS fold E3397_RS22195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3397_RS22200 PF02954 Bacterial regulatory protein, Fis family E3397_RS22200 PF00072 Response regulator receiver domain E3397_RS22200 PF00158 Sigma-54 interaction domain E3397_RS22210 PF06969 HemN C-terminal domain E3397_RS22210 PF04055 Radical SAM superfamily E3397_RS22215 PF04220 Der GTPase activator (YihI) E3397_RS22225 PF01926 50S ribosome-binding GTPase E3397_RS22230 PF01367 5'-3' exonuclease, C-terminal SAM fold E3397_RS22230 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E3397_RS22230 PF01612 3'-5' exonuclease E3397_RS22230 PF00476 DNA polymerase family A E3397_RS22235 PF01553 Acyltransferase E3397_RS22240 PF01323 DSBA-like thioredoxin domain E3397_RS22245 PF01636 Phosphotransferase enzyme family E3397_RS22250 PF06288 Protein of unknown function (DUF1040) E3397_RS22255 PF12804 MobA-like NTP transferase domain E3397_RS22260 PF03205 Molybdopterin guanine dinucleotide synthesis protein B E3397_RS22290 PF12724 Flavodoxin domain E3397_RS22295 PF02386 Cation transport protein E3397_RS22300 PF09186 Domain of unknown function (DUF1949) E3397_RS22300 PF01205 Uncharacterized protein family UPF0029 E3397_RS22305 PF00557 Metallopeptidase family M24 E3397_RS22310 PF00378 Enoyl-CoA hydratase/isomerase E3397_RS22310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3397_RS22310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3397_RS22315 PF02803 Thiolase, C-terminal domain E3397_RS22315 PF00108 Thiolase, N-terminal domain E3397_RS22320 PF05935 Arylsulfotransferase (ASST) E3397_RS22320 PF17425 Arylsulfotransferase Ig-like domain E3397_RS22325 PF00970 Oxidoreductase FAD-binding domain E3397_RS22325 PF00175 Oxidoreductase NAD-binding domain E3397_RS22330 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase E3397_RS22335 PF02357 Transcription termination factor nusG E3397_RS22340 PF01026 TatD related DNase E3397_RS22345 PF00902 Sec-independent protein translocase protein (TatC) E3397_RS22355 PF02416 mttA/Hcf106 family E3397_RS22360 PF03109 ABC1 family E3397_RS22365 PF02036 SCP-2 sterol transfer family E3397_RS22370 PF01209 ubiE/COQ5 methyltransferase family E3397_RS22375 PF02646 RmuC family E3397_RS22380 PF01048 Phosphorylase superfamily E3397_RS22385 PF01738 Dienelactone hydrolase family E3397_RS22390 PF13186 Iron-sulfur cluster-binding domain E3397_RS22390 PF04055 Radical SAM superfamily E3397_RS22400 PF08267 Cobalamin-independent synthase, N-terminal domain E3397_RS22400 PF01717 Cobalamin-independent synthase, Catalytic domain E3397_RS22405 PF03466 LysR substrate binding domain E3397_RS22405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS22410 PF00892 EamA-like transporter family E3397_RS22420 PF12146 Serine aminopeptidase, S33 E3397_RS22425 PF01810 LysE type translocator E3397_RS22430 PF01810 LysE type translocator E3397_RS22435 PF00270 DEAD/DEAH box helicase E3397_RS22435 PF00570 HRDC domain E3397_RS22435 PF16124 RecQ zinc-binding E3397_RS22435 PF09382 RQC domain E3397_RS22435 PF00271 Helicase conserved C-terminal domain E3397_RS22440 PF02253 Phospholipase A1 E3397_RS22445 PF03061 Thioesterase superfamily E3397_RS22450 PF00892 EamA-like transporter family E3397_RS22460 PF10947 Protein of unknown function (DUF2628) E3397_RS22465 PF01544 CorA-like Mg2+ transporter protein E3397_RS22470 PF13361 UvrD-like helicase C-terminal domain E3397_RS22470 PF00580 UvrD/REP helicase N-terminal domain E3397_RS22475 PF13419 Haloacid dehalogenase-like hydrolase E3397_RS22480 PF02899 Phage integrase, N-terminal SAM-like domain E3397_RS22480 PF00589 Phage integrase family E3397_RS22485 PF04340 Protein of unknown function, DUF484 E3397_RS22490 PF01678 Diaminopimelate epimerase E3397_RS22495 PF13627 Prokaryotic lipoprotein-attachment site E3397_RS22510 PF01491 Frataxin-like domain E3397_RS22530 PF01295 Adenylate cyclase, class-I E3397_RS22530 PF12633 Adenylate cyclase NT domain E3397_RS22535 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain E3397_RS22535 PF03900 Porphobilinogen deaminase, C-terminal domain E3397_RS22540 PF02602 Uroporphyrinogen-III synthase HemD E3397_RS22545 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase E3397_RS22550 PF07219 HemY protein N-terminus E3397_RS22550 PF07719 Tetratricopeptide repeat E3397_RS22575 PF00324 Amino acid permease E3397_RS22580 PF03808 Glycosyl transferase WecB/TagA/CpsF family E3397_RS22585 PF06899 WzyE protein, O-antigen assembly polymerase E3397_RS22590 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 E3397_RS22595 PF01943 Polysaccharide biosynthesis protein E3397_RS22600 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E3397_RS22610 PF00483 Nucleotidyl transferase E3397_RS22615 PF16363 GDP-mannose 4,6 dehydratase E3397_RS22620 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E3397_RS22620 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E3397_RS22620 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E3397_RS22625 PF02350 UDP-N-acetylglucosamine 2-epimerase E3397_RS22630 PF02706 Chain length determinant protein E3397_RS22635 PF00953 Glycosyl transferase family 4 E3397_RS22645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3397_RS22645 PF07498 Rho termination factor, N-terminal domain E3397_RS22645 PF07497 Rho termination factor, RNA-binding domain E3397_RS22655 PF00085 Thioredoxin E3397_RS22660 PF00271 Helicase conserved C-terminal domain E3397_RS22660 PF00270 DEAD/DEAH box helicase E3397_RS22665 PF02541 Ppx/GppA phosphatase family E3397_RS22670 PF13361 UvrD-like helicase C-terminal domain E3397_RS22670 PF00580 UvrD/REP helicase N-terminal domain E3397_RS22675 PF04973 Nicotinamide mononucleotide transporter E3397_RS22690 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain E3397_RS22690 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain E3397_RS22695 PF03466 LysR substrate binding domain E3397_RS22695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS22710 PF00291 Pyridoxal-phosphate dependent enzyme E3397_RS22710 PF00585 C-terminal regulatory domain of Threonine dehydratase E3397_RS22715 PF00920 Dehydratase family E3397_RS22720 PF01063 Amino-transferase class IV E3397_RS22730 PF00205 Thiamine pyrophosphate enzyme, central domain E3397_RS22730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3397_RS22730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3397_RS22735 PF08046 IlvGEDA operon leader peptide E3397_RS22740 PF13335 Magnesium chelatase, subunit ChlI C-terminal E3397_RS22740 PF01078 Magnesium chelatase, subunit ChlI E3397_RS22745 PF04219 Protein of unknown function, DUF E3397_RS22750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS22750 PF03466 LysR substrate binding domain E3397_RS22785 PF07729 FCD domain E3397_RS22785 PF00392 Bacterial regulatory proteins, gntR family E3397_RS22790 PF07690 Major Facilitator Superfamily E3397_RS22795 PF00356 Bacterial regulatory proteins, lacI family E3397_RS22800 PF00294 pfkB family carbohydrate kinase E3397_RS22805 PF13407 Periplasmic binding protein domain E3397_RS22810 PF02653 Branched-chain amino acid transport system / permease component E3397_RS22815 PF00005 ABC transporter E3397_RS22820 PF05025 RbsD / FucU transport protein family E3397_RS22825 PF02705 K+ potassium transporter E3397_RS22830 PF12592 Protein of unknown function (DUF3763) E3397_RS22830 PF17868 AAA lid domain E3397_RS22830 PF07728 AAA domain (dynein-related subfamily) E3397_RS22835 PF05762 VWA domain containing CoxE-like protein E3397_RS22840 PF03590 Aspartate-ammonia ligase E3397_RS22845 PF01037 Lrp/AsnC ligand binding domain E3397_RS22850 PF00258 Flavodoxin E3397_RS22855 PF01134 Glucose inhibited division protein A E3397_RS22855 PF13932 GidA associated domain E3397_RS22860 PF02527 rRNA small subunit methyltransferase G E3397_RS22865 PF03899 ATP synthase I chain E3397_RS22870 PF00119 ATP synthase A chain E3397_RS22875 PF00137 ATP synthase subunit C E3397_RS22880 PF00430 ATP synthase B/B' CF(0) E3397_RS22885 PF00213 ATP synthase delta (OSCP) subunit E3397_RS22890 PF00306 ATP synthase alpha/beta chain, C terminal domain E3397_RS22890 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3397_RS22890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3397_RS22895 PF00231 ATP synthase E3397_RS22900 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3397_RS22900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3397_RS22905 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain E3397_RS22905 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain E3397_RS22915 PF12804 MobA-like NTP transferase domain E3397_RS22915 PF00132 Bacterial transferase hexapeptide (six repeats) E3397_RS22920 PF01380 SIS domain E3397_RS22925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3397_RS22925 PF12793 Sugar transport-related sRNA regulator N-term E3397_RS22930 PF08501 Shikimate dehydrogenase substrate binding domain E3397_RS22935 PF02378 Phosphotransferase system, EIIC E3397_RS22935 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3397_RS22940 PF12849 PBP superfamily domain E3397_RS22945 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS22950 PF00528 Binding-protein-dependent transport system inner membrane component E3397_RS22955 PF00005 ABC transporter E3397_RS22960 PF01895 PhoU domain E3397_RS22965 PF13419 Haloacid dehalogenase-like hydrolase E3397_RS22970 PF00860 Permease family E3397_RS22975 PF03358 NADPH-dependent FMN reductase E3397_RS22985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3397_RS22985 PF03466 LysR substrate binding domain E3397_RS22990 PF07690 Major Facilitator Superfamily E3397_RS22995 PF01926 50S ribosome-binding GTPase E3397_RS22995 PF12631 MnmE helical domain E3397_RS22995 PF10396 GTP-binding protein TrmE N-terminus E3397_RS23000 PF14849 YidC periplasmic domain E3397_RS23000 PF02096 60Kd inner membrane protein E3397_RS23005 PF01809 Putative membrane protein insertion efficiency factor E3397_RS23010 PF00825 Ribonuclease P E3397_RS23015 PF00468 Ribosomal protein L34 E3397_RS23040 PF03230 Antirestriction protein E3397_RS23045 PF01464 Transglycosylase SLT domain E3397_RS23050 PF05261 TraM protein, DNA-binding E3397_RS23060 PF05509 TraY domain E3397_RS23065 PF05513 TraA E3397_RS23070 PF07178 TraL protein E3397_RS23075 PF05309 TraE protein E3397_RS23085 PF03743 Bacterial conjugation TrbI-like protein E3397_RS23100 PF09676 Type IV conjugative transfer system lipoprotein (TraV) E3397_RS23105 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer E3397_RS23110 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) E3397_RS23115 PF12477 Sex factor F TraW protein N terminal E3397_RS23120 PF06834 TraU protein E3397_RS23130 PF09673 Type-F conjugative transfer system pilin assembly protein E3397_RS23135 PF06986 Type-1V conjugative transfer system mating pair stabilisation E3397_RS23145 PF13728 F plasmid transfer operon protein E3397_RS23150 PF06122 Conjugative relaxosome accessory transposon protein E3397_RS23155 PF07916 TraG-like protein, N-terminal region E3397_RS23165 PF05818 Enterobacterial TraT complement resistance protein E3397_RS23170 PF12615 F sex factor protein N terminal E3397_RS23170 PF10412 Type IV secretion-system coupling protein DNA-binding domain E3397_RS23175 PF08751 TrwC relaxase E3397_RS23175 PF18340 DNA relaxase TraI 2B/2B-like domain E3397_RS23175 PF18272 single-stranded DNA binding TraI N-terminal subdomain E3397_RS23175 PF07057 DNA helicase TraI E3397_RS23185 PF05857 TraX protein E3397_RS23195 PF10723 Replication regulatory protein RepB E3397_RS23205 PF02387 IncFII RepA protein family E3397_RS23240 PF12833 Helix-turn-helix domain E3397_RS23290 PF13954 PapC N-terminal domain E3397_RS23290 PF13953 PapC C-terminal domain E3397_RS23290 PF00577 Outer membrane usher protein E3397_RS23295 PF02753 Pili assembly chaperone PapD, C-terminal domain E3397_RS23295 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3397_RS23300 PF00872 Transposase, Mutator family E3397_RS23310 PF02369 Bacterial Ig-like domain (group 1) E3397_RS23310 PF02368 Bacterial Ig-like domain (group 2) E3397_RS23310 PF11924 Inverse autotransporter, beta-domain E3397_RS23310 PF07979 Intimin C-type lectin domain E3397_RS23310 PF01476 LysM domain E3397_RS23320 PF03472 Autoinducer binding domain E3397_RS23320 PF00196 Bacterial regulatory proteins, luxR family E3397_RS23330 PF07362 Post-segregation antitoxin CcdA E3397_RS23335 PF01845 CcdB protein E3397_RS23340 PF00589 Phage integrase family E3397_RS23345 PF04754 Putative transposase, YhgA-like E3397_RS23355 PF18607 ParA helix turn helix domain E3397_RS23355 PF13614 AAA domain E3397_RS23360 PF02195 ParB-like nuclease domain E3397_RS23360 PF08775 ParB family E3397_RS23365 PF00817 impB/mucB/samB family E3397_RS23365 PF11799 impB/mucB/samB family C-terminal domain E3397_RS23365 PF13438 Domain of unknown function (DUF4113) E3397_RS23375 PF02586 SOS response associated peptidase (SRAP) E3397_RS23380 PF01555 DNA methylase E3397_RS23390 PF07128 Protein of unknown function (DUF1380) E3397_RS23425 PF00436 Single-strand binding protein family E3397_RS23430 PF06006 Bacterial protein of unknown function (DUF905) E3397_RS23435 PF02195 ParB-like nuclease domain E3397_RS23440 PF06290 Plasmid SOS inhibition protein (PsiB) E3397_RS23445 PF06952 PsiA protein