locus-tag class description DOE58_RS00005 PF00308 Bacterial dnaA protein DOE58_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix DOE58_RS00005 PF11638 DnaA N-terminal domain DOE58_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain DOE58_RS00010 PF02767 DNA polymerase III beta subunit, central domain DOE58_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain DOE58_RS00015 PF02463 RecF/RecN/SMC N terminal domain DOE58_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus DOE58_RS00020 PF00204 DNA gyrase B DOE58_RS00020 PF18053 DNA gyrase B subunit insert domain DOE58_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS00020 PF01751 Toprim domain DOE58_RS00025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS00025 PF03466 LysR substrate binding domain DOE58_RS00030 PF13378 Enolase C-terminal domain-like DOE58_RS00030 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOE58_RS00035 PF07690 Major Facilitator Superfamily DOE58_RS00045 PF07729 FCD domain DOE58_RS00045 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS00050 PF05035 2-keto-3-deoxy-galactonokinase DOE58_RS00055 PF01081 KDPG and KHG aldolase DOE58_RS00060 PF13378 Enolase C-terminal domain-like DOE58_RS00060 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOE58_RS00065 PF07690 Major Facilitator Superfamily DOE58_RS00070 PF00672 HAMP domain DOE58_RS00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS00070 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS00070 PF01627 Hpt domain DOE58_RS00070 PF00072 Response regulator receiver domain DOE58_RS00075 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DOE58_RS00080 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS00080 PF00072 Response regulator receiver domain DOE58_RS00085 PF03264 NapC/NirT cytochrome c family, N-terminal region DOE58_RS00090 PF00384 Molybdopterin oxidoreductase DOE58_RS00090 PF01568 Molydopterin dinucleotide binding domain DOE58_RS00090 PF18364 Molybdopterin oxidoreductase N-terminal domain DOE58_RS00095 PF02613 Nitrate reductase delta subunit DOE58_RS00100 PF14376 Haem-binding domain DOE58_RS00100 PF03150 Di-haem cytochrome c peroxidase DOE58_RS00100 PF00034 Cytochrome c DOE58_RS00105 PF00005 ABC transporter DOE58_RS00110 PF03379 CcmB protein DOE58_RS00115 PF01578 Cytochrome C assembly protein DOE58_RS00120 PF04995 Heme exporter protein D (CcmD) DOE58_RS00125 PF03100 CcmE DOE58_RS00130 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DOE58_RS00130 PF01578 Cytochrome C assembly protein DOE58_RS00135 PF08534 Redoxin DOE58_RS00140 PF03918 Cytochrome C biogenesis protein DOE58_RS00145 PF07676 WD40-like Beta Propeller Repeat DOE58_RS00145 PF12566 Protein of unknown function (DUF3748) DOE58_RS00150 PF07119 Protein of unknown function (DUF1375) DOE58_RS00155 PF00011 Hsp20/alpha crystallin family DOE58_RS00160 PF00011 Hsp20/alpha crystallin family DOE58_RS00165 PF06826 Predicted Permease Membrane Region DOE58_RS00165 PF02080 TrkA-C domain DOE58_RS00170 PF02656 Domain of unknown function (DUF202) DOE58_RS00175 PF02656 Domain of unknown function (DUF202) DOE58_RS00185 PF00291 Pyridoxal-phosphate dependent enzyme DOE58_RS00190 PF02447 GntP family permease DOE58_RS00195 PF03466 LysR substrate binding domain DOE58_RS00195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS00205 PF07690 Major Facilitator Superfamily DOE58_RS00215 PF13939 Toxin TisB, type I toxin-antitoxin system DOE58_RS00230 PF08049 IlvB leader peptide DOE58_RS00235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE58_RS00235 PF00205 Thiamine pyrophosphate enzyme, central domain DOE58_RS00235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE58_RS00240 PF01842 ACT domain DOE58_RS00245 PF08220 DeoR-like helix-turn-helix domain DOE58_RS00245 PF00455 DeoR C terminal sensor domain DOE58_RS00250 PF00294 pfkB family carbohydrate kinase DOE58_RS00255 PF07690 Major Facilitator Superfamily DOE58_RS00265 PF00072 Response regulator receiver domain DOE58_RS00265 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS00270 PF07730 Histidine kinase DOE58_RS00270 PF05231 MASE1 DOE58_RS00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS00275 PF07690 Major Facilitator Superfamily DOE58_RS00280 PF07690 Major Facilitator Superfamily DOE58_RS00285 PF06711 Protein of unknown function (DUF1198) DOE58_RS00290 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS00290 PF07702 UTRA domain DOE58_RS00295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE58_RS00295 PF05043 Mga helix-turn-helix domain DOE58_RS00295 PF00874 PRD domain DOE58_RS00295 PF08279 HTH domain DOE58_RS00300 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE58_RS00305 PF03611 PTS system sugar-specific permease component DOE58_RS00315 PF01116 Fructose-bisphosphate aldolase class-II DOE58_RS00340 PF07690 Major Facilitator Superfamily DOE58_RS00345 PF00232 Glycosyl hydrolase family 1 DOE58_RS00355 PF00158 Sigma-54 interaction domain DOE58_RS00355 PF00874 PRD domain DOE58_RS00365 PF03610 PTS system fructose IIA component DOE58_RS00365 PF03830 PTS system sorbose subfamily IIB component DOE58_RS00370 PF03609 PTS system sorbose-specific iic component DOE58_RS00375 PF03613 PTS system mannose/fructose/sorbose family IID component DOE58_RS00380 PF03841 L-seryl-tRNA selenium transferase DOE58_RS00385 PF07071 KDGP aldolase DOE58_RS00390 PF04754 Putative transposase, YhgA-like DOE58_RS00395 PF00892 EamA-like transporter family DOE58_RS00400 PF02308 MgtC family DOE58_RS00405 PF00690 Cation transporter/ATPase, N-terminus DOE58_RS00405 PF00689 Cation transporting ATPase, C-terminus DOE58_RS00420 PF00857 Isochorismatase family DOE58_RS00430 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS00440 PF03797 Autotransporter beta-domain DOE58_RS00445 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS00470 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system DOE58_RS00495 PF13802 Galactose mutarotase-like DOE58_RS00495 PF01055 Glycosyl hydrolases family 31 DOE58_RS00500 PF05170 AsmA family DOE58_RS00505 PF00860 Permease family DOE58_RS00510 PF03616 Sodium/glutamate symporter DOE58_RS00515 PF00271 Helicase conserved C-terminal domain DOE58_RS00515 PF00270 DEAD/DEAH box helicase DOE58_RS00515 PF17191 RecG wedge domain DOE58_RS00520 PF00588 SpoU rRNA Methylase family DOE58_RS00520 PF12105 SpoU, rRNA methylase, C-terminal DOE58_RS00525 PF02824 TGS domain DOE58_RS00525 PF04607 Region found in RelA / SpoT proteins DOE58_RS00525 PF13291 ACT domain DOE58_RS00530 PF01192 RNA polymerase Rpb6 DOE58_RS00535 PF00625 Guanylate kinase DOE58_RS00540 PF01653 NAD-dependent DNA ligase adenylation domain DOE58_RS00540 PF03120 NAD-dependent DNA ligase OB-fold domain DOE58_RS00545 PF03458 UPF0126 domain DOE58_RS00555 PF03466 LysR substrate binding domain DOE58_RS00555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS00560 PF08340 Domain of unknown function (DUF1732) DOE58_RS00560 PF03755 YicC-like family, N-terminal region DOE58_RS00570 PF01138 3' exoribonuclease family, domain 1 DOE58_RS00570 PF03725 3' exoribonuclease family, domain 2 DOE58_RS00575 PF00156 Phosphoribosyl transferase domain DOE58_RS00580 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS00585 PF00692 dUTPase DOE58_RS00590 PF02441 Flavoprotein DOE58_RS00590 PF04127 DNA / pantothenate metabolism flavoprotein DOE58_RS00595 PF04002 RadC-like JAB domain DOE58_RS00600 PF00830 Ribosomal L28 family DOE58_RS00605 PF00471 Ribosomal protein L33 DOE58_RS00610 PF06827 Zinc finger found in FPG and IleRS DOE58_RS00610 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DOE58_RS00610 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DOE58_RS00615 PF01467 Cytidylyltransferase-like DOE58_RS00620 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DOE58_RS00625 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DOE58_RS00630 PF13439 Glycosyltransferase Family 4 DOE58_RS00630 PF00534 Glycosyl transferases group 1 DOE58_RS00640 PF07922 Glycosyltransferase family 52 DOE58_RS00645 PF13439 Glycosyltransferase Family 4 DOE58_RS00645 PF00534 Glycosyl transferases group 1 DOE58_RS00650 PF01501 Glycosyl transferase family 8 DOE58_RS00650 PF08437 Glycosyl transferase family 8 C-terminal DOE58_RS00655 PF01501 Glycosyl transferase family 8 DOE58_RS00655 PF08437 Glycosyl transferase family 8 C-terminal DOE58_RS00660 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) DOE58_RS00670 PF00534 Glycosyl transferases group 1 DOE58_RS00675 PF04932 O-Antigen ligase DOE58_RS00680 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DOE58_RS00685 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DOE58_RS00690 PF01370 NAD dependent epimerase/dehydratase family DOE58_RS00695 PF00155 Aminotransferase class I and II DOE58_RS00700 PF00107 Zinc-binding dehydrogenase DOE58_RS00700 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS00705 PF00535 Glycosyl transferase family 2 DOE58_RS00710 PF04748 Divergent polysaccharide deacetylase DOE58_RS00715 PF01551 Peptidase family M23 DOE58_RS00720 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DOE58_RS00720 PF01676 Metalloenzyme superfamily DOE58_RS00725 PF00581 Rhodanese-like domain DOE58_RS00730 PF00462 Glutaredoxin DOE58_RS00735 PF02556 Preprotein translocase subunit SecB DOE58_RS00740 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DOE58_RS00740 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DOE58_RS00745 PF00132 Bacterial transferase hexapeptide (six repeats) DOE58_RS00745 PF06426 Serine acetyltransferase, N-terminal DOE58_RS00750 PF00588 SpoU rRNA Methylase family DOE58_RS00755 PF01070 FMN-dependent dehydrogenase DOE58_RS00760 PF07729 FCD domain DOE58_RS00760 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS00765 PF02652 L-lactate permease DOE58_RS00770 PF05662 Coiled stalk of trimeric autotransporter adhesin DOE58_RS00770 PF03895 YadA-like membrane anchor domain DOE58_RS00770 PF13018 Extended Signal Peptide of Type V secretion system DOE58_RS00770 PF05658 Head domain of trimeric autotransporter adhesin DOE58_RS00775 PF11622 Protein of unknown function (DUF3251) DOE58_RS00785 PF10928 Protein of unknown function (DUF2810) DOE58_RS00795 PF05068 Mannitol repressor DOE58_RS00800 PF08125 Mannitol dehydrogenase C-terminal domain DOE58_RS00800 PF01232 Mannitol dehydrogenase Rossmann domain DOE58_RS00805 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE58_RS00805 PF02378 Phosphotransferase system, EIIC DOE58_RS00805 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE58_RS00810 PF13417 Glutathione S-transferase, N-terminal domain DOE58_RS00810 PF00043 Glutathione S-transferase, C-terminal domain DOE58_RS00815 PF03841 L-seryl-tRNA selenium transferase DOE58_RS00815 PF12390 Selenocysteine synthase N terminal DOE58_RS00820 PF03144 Elongation factor Tu domain 2 DOE58_RS00820 PF00009 Elongation factor Tu GTP binding domain DOE58_RS00820 PF09107 Elongation factor SelB, winged helix DOE58_RS00820 PF09106 Elongation factor SelB, winged helix DOE58_RS00825 PF00480 ROK family DOE58_RS00830 PF00171 Aldehyde dehydrogenase family DOE58_RS00835 PF07944 Beta-L-arabinofuranosidase, GH127 DOE58_RS00845 PF00596 Class II Aldolase and Adducin N-terminal domain DOE58_RS00850 PF01261 Xylose isomerase-like TIM barrel DOE58_RS00855 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DOE58_RS00860 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE58_RS00860 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE58_RS00865 PF03480 Bacterial extracellular solute-binding protein, family 7 DOE58_RS00870 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DOE58_RS00875 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DOE58_RS00880 PF16154 Domain of unknown function (DUF4862) DOE58_RS00885 PF04074 YhcH/YjgK/YiaL DOE58_RS00890 PF02615 Malate/L-lactate dehydrogenase DOE58_RS00895 PF01614 Bacterial transcriptional regulator DOE58_RS00895 PF09339 IclR helix-turn-helix domain DOE58_RS00900 PF13247 4Fe-4S dicluster domain DOE58_RS00905 PF00155 Aminotransferase class I and II DOE58_RS00910 PF00128 Alpha amylase, catalytic domain DOE58_RS00915 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DOE58_RS00920 PF12833 Helix-turn-helix domain DOE58_RS00935 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE58_RS00935 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE58_RS00940 PF05360 yiaA/B two helix domain DOE58_RS00945 PF01757 Acyltransferase family DOE58_RS00955 PF13983 YsaB-like lipoprotein DOE58_RS00960 PF02091 Glycyl-tRNA synthetase alpha subunit DOE58_RS00965 PF05746 DALR anticodon binding domain DOE58_RS00965 PF02092 Glycyl-tRNA synthetase beta subunit DOE58_RS00970 PF00665 Integrase core domain DOE58_RS00970 PF13333 Integrase core domain DOE58_RS00970 PF13276 HTH-like domain DOE58_RS01010 PF00313 'Cold-shock' DNA-binding domain DOE58_RS01015 PF01381 Helix-turn-helix DOE58_RS01020 PF11254 Protein of unknown function (DUF3053) DOE58_RS01025 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOE58_RS01025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE58_RS01030 PF13488 Glycine zipper DOE58_RS01030 PF00691 OmpA family DOE58_RS01035 PF00384 Molybdopterin oxidoreductase DOE58_RS01035 PF18364 Molybdopterin oxidoreductase N-terminal domain DOE58_RS01035 PF01568 Molydopterin dinucleotide binding domain DOE58_RS01040 PF00583 Acetyltransferase (GNAT) family DOE58_RS01045 PF03352 Methyladenine glycosylase DOE58_RS01050 PF03797 Autotransporter beta-domain DOE58_RS01055 PF08019 Phosphoethanolamine transferase EptA/EptB DOE58_RS01055 PF00884 Sulfatase DOE58_RS01095 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS01105 PF00860 Permease family DOE58_RS01110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE58_RS01115 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS01120 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS01120 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE58_RS01125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE58_RS01125 PF00005 ABC transporter DOE58_RS01130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE58_RS01130 PF00005 ABC transporter DOE58_RS01135 PF03222 Tryptophan/tyrosine permease family DOE58_RS01145 PF13940 Toxin Ldr, type I toxin-antitoxin system DOE58_RS01150 PF11658 Cellulose biosynthesis protein BcsG DOE58_RS01155 PF11120 Cellulose biosynthesis protein BcsF DOE58_RS01160 PF10995 Cellulose biosynthesis GIL DOE58_RS01165 PF10945 Cellulose biosynthesis protein BcsR DOE58_RS01170 PF06564 Cellulose biosynthesis protein BcsQ DOE58_RS01175 PF00535 Glycosyl transferase family 2 DOE58_RS01175 PF07238 PilZ domain DOE58_RS01180 PF03170 Bacterial cellulose synthase subunit DOE58_RS01185 PF01270 Glycosyl hydrolases family 8 DOE58_RS01190 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) DOE58_RS01190 PF13176 Tetratricopeptide repeat DOE58_RS01200 PF00990 Diguanylate cyclase, GGDEF domain DOE58_RS01200 PF17154 Gammaproteobacterial periplasmic sensor domain DOE58_RS01200 PF00563 EAL domain DOE58_RS01200 PF00672 HAMP domain DOE58_RS01205 PF00375 Sodium:dicarboxylate symporter family DOE58_RS01210 PF00675 Insulinase (Peptidase family M16) DOE58_RS01210 PF05193 Peptidase M16 inactive domain DOE58_RS01215 PF00294 pfkB family carbohydrate kinase DOE58_RS01220 PF00563 EAL domain DOE58_RS01225 PF05170 AsmA family DOE58_RS01230 PF07690 Major Facilitator Superfamily DOE58_RS01230 PF00083 Sugar (and other) transporter DOE58_RS01235 PF03631 Virulence factor BrkB DOE58_RS01240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS01240 PF03466 LysR substrate binding domain DOE58_RS01260 PF01204 Trehalase DOE58_RS01265 PF07702 UTRA domain DOE58_RS01265 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS01270 PF01380 SIS domain DOE58_RS01275 PF00294 pfkB family carbohydrate kinase DOE58_RS01280 PF03605 Anaerobic c4-dicarboxylate membrane transporter DOE58_RS01285 PF00710 Asparaginase, N-terminal DOE58_RS01285 PF17763 Glutaminase/Asparaginase C-terminal domain DOE58_RS01290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE58_RS01290 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS01295 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DOE58_RS01300 PF01569 PAP2 superfamily DOE58_RS01305 PF01432 Peptidase family M3 DOE58_RS01310 PF04445 Putative SAM-dependent methyltransferase DOE58_RS01315 PF00854 POT family DOE58_RS01320 PF00582 Universal stress protein family DOE58_RS01325 PF10625 Universal stress protein B (UspB) DOE58_RS01330 PF01384 Phosphate transporter family DOE58_RS01340 PF13533 Biotin-lipoyl like DOE58_RS01345 PF00005 ABC transporter DOE58_RS01355 PF08753 NikR C terminal nickel binding domain DOE58_RS01355 PF01402 Ribbon-helix-helix protein, copG family DOE58_RS01360 PF01648 4'-phosphopantetheinyl transferase superfamily DOE58_RS01365 PF01594 AI-2E family transporter DOE58_RS01370 PF07690 Major Facilitator Superfamily DOE58_RS01375 PF08786 DcrB DOE58_RS01380 PF02592 Putative vitamin uptake transporter DOE58_RS01385 PF01206 Sulfurtransferase TusA DOE58_RS01390 PF02203 Tar ligand binding domain homologue DOE58_RS01390 PF00672 HAMP domain DOE58_RS01390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE58_RS01395 PF00403 Heavy-metal-associated domain DOE58_RS01400 PF07947 YhhN family DOE58_RS01405 PF10694 Protein of unknown function (DUF2500) DOE58_RS01410 PF06611 Protein of unknown function (DUF1145) DOE58_RS01420 PF02881 SRP54-type protein, helical bundle domain DOE58_RS01420 PF00448 SRP54-type protein, GTPase domain DOE58_RS01425 PF00005 ABC transporter DOE58_RS01430 PF02687 FtsX-like permease family DOE58_RS01430 PF18075 FtsX extracellular domain DOE58_RS01435 PF04545 Sigma-70, region 4 DOE58_RS01435 PF04542 Sigma-70 region 2 DOE58_RS01440 PF13458 Periplasmic binding protein DOE58_RS01450 PF12568 Acetyltransferase (GNAT) domain, PanZ DOE58_RS01455 PF13458 Periplasmic binding protein DOE58_RS01460 PF02653 Branched-chain amino acid transport system / permease component DOE58_RS01465 PF11862 Domain of unknown function (DUF3382) DOE58_RS01465 PF02653 Branched-chain amino acid transport system / permease component DOE58_RS01470 PF00005 ABC transporter DOE58_RS01470 PF12399 Branched-chain amino acid ATP-binding cassette transporter DOE58_RS01475 PF00005 ABC transporter DOE58_RS01480 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DOE58_RS01490 PF13416 Bacterial extracellular solute-binding protein DOE58_RS01495 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS01500 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS01505 PF17912 MalK OB fold domain DOE58_RS01505 PF00005 ABC transporter DOE58_RS01510 PF03009 Glycerophosphoryl diester phosphodiesterase family DOE58_RS01515 PF10956 Protein of unknown function (DUF2756) DOE58_RS01525 PF02126 Phosphotriesterase family DOE58_RS01555 PF00294 pfkB family carbohydrate kinase DOE58_RS01560 PF00583 Acetyltransferase (GNAT) family DOE58_RS01565 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE58_RS01565 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE58_RS01570 PF02678 Pirin DOE58_RS01570 PF17954 Quercetinase C-terminal cupin domain DOE58_RS01575 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DOE58_RS01575 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS01580 PF01202 Shikimate kinase DOE58_RS01585 PF02447 GntP family permease DOE58_RS01595 PF01118 Semialdehyde dehydrogenase, NAD binding domain DOE58_RS01595 PF02774 Semialdehyde dehydrogenase, dimerisation domain DOE58_RS01600 PF02806 Alpha amylase, C-terminal all-beta domain DOE58_RS01600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOE58_RS01600 PF00128 Alpha amylase, catalytic domain DOE58_RS01605 PF18390 Glycogen debranching enzyme C-terminal domain DOE58_RS01605 PF00128 Alpha amylase, catalytic domain DOE58_RS01605 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOE58_RS01610 PF00483 Nucleotidyl transferase DOE58_RS01615 PF00534 Glycosyl transferases group 1 DOE58_RS01615 PF08323 Starch synthase catalytic domain DOE58_RS01620 PF00343 Carbohydrate phosphorylase DOE58_RS01625 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DOE58_RS01625 PF01266 FAD dependent oxidoreductase DOE58_RS01630 PF00581 Rhodanese-like domain DOE58_RS01635 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease DOE58_RS01635 PF01694 Rhomboid family DOE58_RS01640 PF00455 DeoR C terminal sensor domain DOE58_RS01640 PF08220 DeoR-like helix-turn-helix domain DOE58_RS01645 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS01645 PF17874 MalT-like TPR region DOE58_RS01650 PF00343 Carbohydrate phosphorylase DOE58_RS01655 PF02446 4-alpha-glucanotransferase DOE58_RS01660 PF02447 GntP family permease DOE58_RS01665 PF01106 NifU-like domain DOE58_RS01665 PF01521 Iron-sulphur cluster biosynthesis DOE58_RS01670 PF00156 Phosphoribosyl transferase domain DOE58_RS01675 PF00561 alpha/beta hydrolase fold DOE58_RS01680 PF04754 Putative transposase, YhgA-like DOE58_RS01685 PF09012 FeoC like transcriptional regulator DOE58_RS01690 PF17910 FeoB cytosolic helical domain DOE58_RS01690 PF07664 Ferrous iron transport protein B C terminus DOE58_RS01690 PF07670 Nucleoside recognition DOE58_RS01690 PF02421 Ferrous iron transport protein B DOE58_RS01695 PF04023 FeoA domain DOE58_RS01705 PF16921 Tex protein YqgF-like domain DOE58_RS01705 PF17674 HHH domain DOE58_RS01705 PF00575 S1 RNA binding domain DOE58_RS01705 PF09371 Tex-like protein N-terminal domain DOE58_RS01710 PF03449 Transcription elongation factor, N-terminal DOE58_RS01710 PF01272 Transcription elongation factor, GreA/GreB, C-term DOE58_RS01715 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS01715 PF00072 Response regulator receiver domain DOE58_RS01720 PF00672 HAMP domain DOE58_RS01720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS01720 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS01725 PF01293 Phosphoenolpyruvate carboxykinase DOE58_RS01730 PF13687 Domain of unknown function (DUF4153) DOE58_RS01735 PF01430 Hsp33 protein DOE58_RS01740 PF01479 S4 domain DOE58_RS01745 PF13419 Haloacid dehalogenase-like hydrolase DOE58_RS01750 PF07095 Intracellular growth attenuator protein IgaA DOE58_RS01755 PF00293 NUDIX domain DOE58_RS01760 PF00912 Transglycosylase DOE58_RS01760 PF17092 Penicillin-binding protein OB-like domain DOE58_RS01760 PF00905 Penicillin binding protein transpeptidase domain DOE58_RS01770 PF05137 Fimbrial assembly protein (PilN) DOE58_RS01780 PF10748 DNA utilization proteins HofP DOE58_RS01785 PF03958 Bacterial type II/III secretion system short domain DOE58_RS01785 PF00263 Bacterial type II and III secretion system protein DOE58_RS01800 PF01202 Shikimate kinase DOE58_RS01805 PF01761 3-dehydroquinate synthase DOE58_RS01810 PF05036 Sporulation related domain DOE58_RS01815 PF02086 D12 class N6 adenine-specific DNA methyltransferase DOE58_RS01820 PF00834 Ribulose-phosphate 3 epimerase family DOE58_RS01825 PF13419 Haloacid dehalogenase-like hydrolase DOE58_RS01830 PF00579 tRNA synthetases class I (W and Y) DOE58_RS01835 PF13978 Protein of unknown function (DUF4223) DOE58_RS01845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE58_RS01845 PF14824 Sirohaem biosynthesis protein central DOE58_RS01845 PF10414 Sirohaem synthase dimerisation region DOE58_RS01850 PF01226 Formate/nitrite transporter DOE58_RS01860 PF13806 Rieske-like [2Fe-2S] domain DOE58_RS01865 PF04324 BFD-like [2Fe-2S] binding domain DOE58_RS01865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DOE58_RS01865 PF18267 Rubredoxin NAD+ reductase C-terminal domain DOE58_RS01865 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS01865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DOE58_RS01870 PF07690 Major Facilitator Superfamily DOE58_RS01875 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DOE58_RS01880 PF10832 Protein of unknown function (DUF2559) DOE58_RS01885 PF02661 Fic/DOC family DOE58_RS01890 PF00117 Glutamine amidotransferase class-I DOE58_RS01895 PF00202 Aminotransferase class-III DOE58_RS01900 PF12805 FUSC-like inner membrane protein yccS DOE58_RS01905 PF00027 Cyclic nucleotide-binding domain DOE58_RS01905 PF13545 Crp-like helix-turn-helix domain DOE58_RS01910 PF02566 OsmC-like protein DOE58_RS01915 PF00485 Phosphoribulokinase / Uridine kinase family DOE58_RS01920 PF06794 Uncharacterised protein family (UPF0270) DOE58_RS01925 PF00561 alpha/beta hydrolase fold DOE58_RS01930 PF08803 Putative mono-oxygenase ydhR DOE58_RS01935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS01935 PF03466 LysR substrate binding domain DOE58_RS01940 PF00005 ABC transporter DOE58_RS01940 PF12848 ABC transporter DOE58_RS01945 PF02525 Flavodoxin-like fold DOE58_RS01950 PF00999 Sodium/hydrogen exchanger family DOE58_RS01950 PF02254 TrkA-N domain DOE58_RS01955 PF09526 Probable metal-binding protein (DUF2387) DOE58_RS01960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOE58_RS01970 PF04102 SlyX DOE58_RS01975 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DOE58_RS01975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOE58_RS01985 PF01797 Transposase IS200 like DOE58_RS01995 PF08348 YheO-like PAS domain DOE58_RS01995 PF13309 HTH domain DOE58_RS02000 PF02635 DsrE/DsrF-like family DOE58_RS02005 PF02635 DsrE/DsrF-like family DOE58_RS02010 PF04077 DsrH like protein DOE58_RS02015 PF00164 Ribosomal protein S12/S23 DOE58_RS02020 PF00177 Ribosomal protein S7p/S5e DOE58_RS02025 PF03144 Elongation factor Tu domain 2 DOE58_RS02025 PF00009 Elongation factor Tu GTP binding domain DOE58_RS02025 PF03764 Elongation factor G, domain IV DOE58_RS02025 PF00679 Elongation factor G C-terminus DOE58_RS02025 PF14492 Elongation Factor G, domain II DOE58_RS02030 PF03143 Elongation factor Tu C-terminal domain DOE58_RS02030 PF03144 Elongation factor Tu domain 2 DOE58_RS02030 PF00009 Elongation factor Tu GTP binding domain DOE58_RS02045 PF04324 BFD-like [2Fe-2S] binding domain DOE58_RS02050 PF00210 Ferritin-like domain DOE58_RS02055 PF01478 Type IV leader peptidase family DOE58_RS02065 PF00338 Ribosomal protein S10p/S20e DOE58_RS02070 PF00297 Ribosomal protein L3 DOE58_RS02075 PF00573 Ribosomal protein L4/L1 family DOE58_RS02080 PF00276 Ribosomal protein L23 DOE58_RS02085 PF00181 Ribosomal Proteins L2, RNA binding domain DOE58_RS02085 PF03947 Ribosomal Proteins L2, C-terminal domain DOE58_RS02090 PF00203 Ribosomal protein S19 DOE58_RS02095 PF00237 Ribosomal protein L22p/L17e DOE58_RS02100 PF07650 KH domain DOE58_RS02100 PF00189 Ribosomal protein S3, C-terminal domain DOE58_RS02105 PF00252 Ribosomal protein L16p/L10e DOE58_RS02110 PF00831 Ribosomal L29 protein DOE58_RS02115 PF00366 Ribosomal protein S17 DOE58_RS02120 PF00238 Ribosomal protein L14p/L23e DOE58_RS02125 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DOE58_RS02125 PF00467 KOW motif DOE58_RS02130 PF00673 ribosomal L5P family C-terminus DOE58_RS02130 PF00281 Ribosomal protein L5 DOE58_RS02135 PF00253 Ribosomal protein S14p/S29e DOE58_RS02140 PF00410 Ribosomal protein S8 DOE58_RS02145 PF00347 Ribosomal protein L6 DOE58_RS02150 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DOE58_RS02155 PF00333 Ribosomal protein S5, N-terminal domain DOE58_RS02155 PF03719 Ribosomal protein S5, C-terminal domain DOE58_RS02160 PF00327 Ribosomal protein L30p/L7e DOE58_RS02165 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DOE58_RS02170 PF00344 SecY translocase DOE58_RS02175 PF00444 Ribosomal protein L36 DOE58_RS02180 PF00416 Ribosomal protein S13/S18 DOE58_RS02185 PF00411 Ribosomal protein S11 DOE58_RS02190 PF01479 S4 domain DOE58_RS02190 PF00163 Ribosomal protein S4/S9 N-terminal domain DOE58_RS02195 PF01000 RNA polymerase Rpb3/RpoA insert domain DOE58_RS02195 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DOE58_RS02195 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DOE58_RS02200 PF01196 Ribosomal protein L17 DOE58_RS02205 PF09350 Domain of unknown function (DUF1992) DOE58_RS02210 PF13411 MerR HTH family regulatory protein DOE58_RS02215 PF03889 Alternative ribosome-rescue factor A DOE58_RS02220 PF01741 Large-conductance mechanosensitive channel, MscL DOE58_RS02225 PF02254 TrkA-N domain DOE58_RS02225 PF02080 TrkA-C domain DOE58_RS02230 PF01029 NusB family DOE58_RS02230 PF01189 16S rRNA methyltransferase RsmB/F DOE58_RS02235 PF02911 Formyl transferase, C-terminal domain DOE58_RS02235 PF00551 Formyl transferase DOE58_RS02240 PF01327 Polypeptide deformylase DOE58_RS02245 PF02481 DNA recombination-mediator protein A DOE58_RS02245 PF17782 DprA winged helix domain DOE58_RS02250 PF04361 Protein of unknown function (DUF494) DOE58_RS02255 PF01396 Topoisomerase DNA binding C4 zinc finger DOE58_RS02260 PF01300 Telomere recombination DOE58_RS02265 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DOE58_RS02265 PF08501 Shikimate dehydrogenase substrate binding domain DOE58_RS02265 PF01488 Shikimate / quinate 5-dehydrogenase DOE58_RS02270 PF07369 Protein of unknown function (DUF1488) DOE58_RS02275 PF00132 Bacterial transferase hexapeptide (six repeats) DOE58_RS02315 PF00873 AcrB/AcrD/AcrF family DOE58_RS02320 PF00529 HlyD membrane-fusion protein of T1SS DOE58_RS02320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE58_RS02325 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS02325 PF08361 MAATS-type transcriptional repressor, C-terminal region DOE58_RS02330 PF00563 EAL domain DOE58_RS02330 PF00990 Diguanylate cyclase, GGDEF domain DOE58_RS02330 PF03707 Bacterial signalling protein N terminal repeat DOE58_RS02335 PF10831 Protein of unknown function (DUF2556) DOE58_RS02340 PF01555 DNA methylase DOE58_RS02345 PF02954 Bacterial regulatory protein, Fis family DOE58_RS02350 PF01207 Dihydrouridine synthase (Dus) DOE58_RS02360 PF00474 Sodium:solute symporter family DOE58_RS02365 PF06196 Protein of unknown function (DUF997) DOE58_RS02370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOE58_RS02370 PF00289 Biotin carboxylase, N-terminal domain DOE58_RS02370 PF02785 Biotin carboxylase C-terminal domain DOE58_RS02375 PF00364 Biotin-requiring enzyme DOE58_RS02380 PF01794 Ferric reductase like transmembrane component DOE58_RS02385 PF00174 Oxidoreductase molybdopterin binding domain DOE58_RS02390 PF00107 Zinc-binding dehydrogenase DOE58_RS02390 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS02395 PF00563 EAL domain DOE58_RS02395 PF17157 Gammaproteobacterial periplasmic sensor domain DOE58_RS02395 PF00990 Diguanylate cyclase, GGDEF domain DOE58_RS02415 PF04085 rod shape-determining protein MreC DOE58_RS02420 PF04093 rod shape-determining protein MreD DOE58_RS02425 PF02545 Maf-like protein DOE58_RS02430 PF10150 Ribonuclease E/G family DOE58_RS02430 PF00575 S1 RNA binding domain DOE58_RS02435 PF13502 AsmA-like C-terminal region DOE58_RS02435 PF13116 Protein of unknown function DOE58_RS02440 PF01523 Putative modulator of DNA gyrase DOE58_RS02445 PF03466 LysR substrate binding domain DOE58_RS02445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS02450 PF07869 Protein of unknown function (DUF1656) DOE58_RS02455 PF13533 Biotin-lipoyl like DOE58_RS02460 PF04632 Fusaric acid resistance protein family DOE58_RS02465 PF01337 Barstar (barnase inhibitor) DOE58_RS02470 PF07338 Protein of unknown function (DUF1471) DOE58_RS02475 PF07338 Protein of unknown function (DUF1471) DOE58_RS02480 PF01316 Arginine repressor, DNA binding domain DOE58_RS02480 PF02863 Arginine repressor, C-terminal domain DOE58_RS02485 PF00056 lactate/malate dehydrogenase, NAD binding domain DOE58_RS02485 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DOE58_RS02490 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS02490 PF07702 UTRA domain DOE58_RS02500 PF00939 Sodium:sulfate symporter transmembrane region DOE58_RS02505 PF05681 Fumarate hydratase (Fumerase) DOE58_RS02510 PF05683 Fumarase C-terminus DOE58_RS02515 PF04277 Oxaloacetate decarboxylase, gamma chain DOE58_RS02520 PF00364 Biotin-requiring enzyme DOE58_RS02520 PF00682 HMGL-like DOE58_RS02520 PF02436 Conserved carboxylase domain DOE58_RS02525 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit DOE58_RS02530 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DOE58_RS02535 PF13180 PDZ domain DOE58_RS02540 PF00595 PDZ domain DOE58_RS02540 PF13180 PDZ domain DOE58_RS02545 PF06295 Protein of unknown function (DUF1043) DOE58_RS02550 PF03969 AFG1-like ATPase DOE58_RS02555 PF00572 Ribosomal protein L13 DOE58_RS02560 PF00380 Ribosomal protein S9/S16 DOE58_RS02565 PF02798 Glutathione S-transferase, N-terminal domain DOE58_RS02565 PF00043 Glutathione S-transferase, C-terminal domain DOE58_RS02570 PF04386 Stringent starvation protein B DOE58_RS02575 PF07729 FCD domain DOE58_RS02575 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS02580 PF00701 Dihydrodipicolinate synthetase family DOE58_RS02585 PF07690 Major Facilitator Superfamily DOE58_RS02590 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DOE58_RS02595 PF00480 ROK family DOE58_RS02600 PF04074 YhcH/YjgK/YiaL DOE58_RS02605 PF07969 Amidohydrolase family DOE58_RS02610 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DOE58_RS02615 PF06250 YhcG PDDEXK nuclease domain DOE58_RS02615 PF17761 DUF1016 N-terminal domain DOE58_RS02620 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS02620 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DOE58_RS02625 PF01645 Conserved region in glutamate synthase DOE58_RS02625 PF04898 Glutamate synthase central domain DOE58_RS02625 PF01493 GXGXG motif DOE58_RS02625 PF00310 Glutamine amidotransferases class-II DOE58_RS02635 PF04055 Radical SAM superfamily DOE58_RS02635 PF16199 Radical_SAM C-terminal domain DOE58_RS02640 PF00072 Response regulator receiver domain DOE58_RS02640 PF00989 PAS fold DOE58_RS02640 PF01627 Hpt domain DOE58_RS02640 PF18415 Histidine kinase receptor ArcB trans-membrane domain DOE58_RS02640 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS02640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS02650 PF00912 Transglycosylase DOE58_RS02655 PF10707 PhoP regulatory network protein YrbL DOE58_RS02665 PF00381 PTS HPr component phosphorylation site DOE58_RS02670 PF03668 P-loop ATPase protein family DOE58_RS02675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE58_RS02680 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DOE58_RS02685 PF04963 Sigma-54 factor, core binding domain DOE58_RS02685 PF04552 Sigma-54, DNA binding domain DOE58_RS02685 PF00309 Sigma-54 factor, Activator interacting domain (AID) DOE58_RS02690 PF00005 ABC transporter DOE58_RS02690 PF12399 Branched-chain amino acid ATP-binding cassette transporter DOE58_RS02695 PF03968 OstA-like protein DOE58_RS02700 PF06835 Lipopolysaccharide-assembly, LptC-related DOE58_RS02710 PF01380 SIS domain DOE58_RS02710 PF00571 CBS domain DOE58_RS02715 PF01699 Sodium/calcium exchanger protein DOE58_RS02720 PF00005 ABC transporter DOE58_RS02725 PF02405 Permease MlaE DOE58_RS02730 PF02470 MlaD protein DOE58_RS02735 PF05494 MlaC protein DOE58_RS02740 PF13466 STAS domain DOE58_RS02745 PF01722 BolA-like protein DOE58_RS02750 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DOE58_RS02755 PF13693 Winged helix-turn-helix DNA-binding DOE58_RS02760 PF00348 Polyprenyl synthetase DOE58_RS02765 PF00829 Ribosomal prokaryotic L21 protein DOE58_RS02770 PF01016 Ribosomal L27 protein DOE58_RS02775 PF00892 EamA-like transporter family DOE58_RS02780 PF01018 GTP1/OBG DOE58_RS02780 PF01926 50S ribosome-binding GTPase DOE58_RS02785 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DOE58_RS02790 PF01272 Transcription elongation factor, GreA/GreB, C-term DOE58_RS02790 PF03449 Transcription elongation factor, N-terminal DOE58_RS02795 PF01985 CRS1 / YhbY (CRM) domain DOE58_RS02800 PF01728 FtsJ-like methyltransferase DOE58_RS02810 PF01434 Peptidase family M41 DOE58_RS02810 PF06480 FtsH Extracellular DOE58_RS02810 PF17862 AAA+ lid domain DOE58_RS02810 PF00004 ATPase family associated with various cellular activities (AAA) DOE58_RS02815 PF00809 Pterin binding enzyme DOE58_RS02820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOE58_RS02820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOE58_RS02820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOE58_RS02820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOE58_RS02825 PF03840 Preprotein translocase SecG subunit DOE58_RS02840 PF01797 Transposase IS200 like DOE58_RS02850 PF00764 Arginosuccinate synthase DOE58_RS02860 PF02576 RimP N-terminal domain DOE58_RS02860 PF17384 RimP C-terminal SH3 domain DOE58_RS02865 PF08529 NusA N-terminal domain DOE58_RS02865 PF13184 NusA-like KH domain DOE58_RS02870 PF11987 Translation-initiation factor 2 DOE58_RS02870 PF00009 Elongation factor Tu GTP binding domain DOE58_RS02870 PF04760 Translation initiation factor IF-2, N-terminal region DOE58_RS02870 PF08364 Bacterial translation initiation factor IF-2 associated region DOE58_RS02875 PF02033 Ribosome-binding factor A DOE58_RS02880 PF16198 tRNA pseudouridylate synthase B C-terminal domain DOE58_RS02880 PF09157 Pseudouridine synthase II TruB, C-terminal DOE58_RS02880 PF01509 TruB family pseudouridylate synthase (N terminal domain) DOE58_RS02885 PF00312 Ribosomal protein S15 DOE58_RS02890 PF00575 S1 RNA binding domain DOE58_RS02890 PF01138 3' exoribonuclease family, domain 1 DOE58_RS02890 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DOE58_RS02890 PF03725 3' exoribonuclease family, domain 2 DOE58_RS02890 PF00013 KH domain DOE58_RS02895 PF07719 Tetratricopeptide repeat DOE58_RS02895 PF13181 Tetratricopeptide repeat DOE58_RS02900 PF12343 Cold shock protein DEAD box A DOE58_RS02900 PF03880 DbpA RNA binding domain DOE58_RS02900 PF00271 Helicase conserved C-terminal domain DOE58_RS02900 PF00270 DEAD/DEAH box helicase DOE58_RS02905 PF03222 Tryptophan/tyrosine permease family DOE58_RS02910 PF00296 Luciferase-like monooxygenase DOE58_RS02915 PF01136 Peptidase family U32 DOE58_RS02920 PF01136 Peptidase family U32 DOE58_RS02925 PF02036 SCP-2 sterol transfer family DOE58_RS02930 PF13508 Acetyltransferase (GNAT) domain DOE58_RS02935 PF01541 GIY-YIG catalytic domain DOE58_RS02945 PF01965 DJ-1/PfpI family DOE58_RS02950 PF13460 NAD(P)H-binding DOE58_RS02955 PF04972 BON domain DOE58_RS02960 PF13580 SIS domain DOE58_RS02965 PF02021 Uncharacterised protein family UPF0102 DOE58_RS02970 PF04348 LppC putative lipoprotein DOE58_RS02975 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE58_RS02980 PF08220 DeoR-like helix-turn-helix domain DOE58_RS02985 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS02985 PF00107 Zinc-binding dehydrogenase DOE58_RS02990 PF03611 PTS system sugar-specific permease component DOE58_RS02995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE58_RS03000 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE58_RS03005 PF08013 Tagatose 6 phosphate kinase DOE58_RS03010 PF01116 Fructose-bisphosphate aldolase class-II DOE58_RS03015 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DOE58_RS03015 PF08666 SAF domain DOE58_RS03040 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOE58_RS03040 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DOE58_RS03045 PF02595 Glycerate kinase family DOE58_RS03070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS03070 PF03466 LysR substrate binding domain DOE58_RS03075 PF00291 Pyridoxal-phosphate dependent enzyme DOE58_RS03080 PF03222 Tryptophan/tyrosine permease family DOE58_RS03120 PF06892 Phage regulatory protein CII (CP76) DOE58_RS03130 PF07022 Bacteriophage CI repressor helix-turn-helix domain DOE58_RS03130 PF16452 Bacteriophage CI repressor C-terminal domain DOE58_RS03135 PF02899 Phage integrase, N-terminal SAM-like domain DOE58_RS03135 PF00589 Phage integrase family DOE58_RS03145 PF08021 Siderophore-interacting FAD-binding domain DOE58_RS03145 PF04954 Siderophore-interacting protein DOE58_RS03150 PF03551 Transcriptional regulator PadR-like family DOE58_RS03155 PF00672 HAMP domain DOE58_RS03155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE58_RS03155 PF02203 Tar ligand binding domain homologue DOE58_RS03160 PF08447 PAS fold DOE58_RS03160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE58_RS03170 PF00202 Aminotransferase class-III DOE58_RS03175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DOE58_RS03175 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS03180 PF05175 Methyltransferase small domain DOE58_RS03185 PF01863 Protein of unknown function DUF45 DOE58_RS03190 PF02698 DUF218 domain DOE58_RS03195 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE58_RS03200 PF03741 Integral membrane protein TerC family DOE58_RS03205 PF00375 Sodium:dicarboxylate symporter family DOE58_RS03215 PF09335 SNARE associated Golgi protein DOE58_RS03220 PF13721 SecD export protein N-terminal TM region DOE58_RS03225 PF06476 Protein of unknown function (DUF1090) DOE58_RS03230 PF05957 Bacterial protein of unknown function (DUF883) DOE58_RS03235 PF07332 Putative Actinobacterial Holin-X, holin superfamily III DOE58_RS03240 PF13997 YqjK-like protein DOE58_RS03245 PF07681 DoxX DOE58_RS03250 PF13409 Glutathione S-transferase, N-terminal domain DOE58_RS03255 PF05656 Protein of unknown function (DUF805) DOE58_RS03260 PF03466 LysR substrate binding domain DOE58_RS03260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS03265 PF02678 Pirin DOE58_RS03265 PF17954 Quercetinase C-terminal cupin domain DOE58_RS03275 PF03313 Serine dehydratase alpha chain DOE58_RS03285 PF03313 Serine dehydratase alpha chain DOE58_RS03285 PF03315 Serine dehydratase beta chain DOE58_RS03290 PF02901 Pyruvate formate lyase-like DOE58_RS03290 PF01228 Glycine radical DOE58_RS03295 PF00871 Acetokinase family DOE58_RS03440 PF08400 Prophage tail fibre N-terminal DOE58_RS03440 PF07484 Phage Tail Collar Domain DOE58_RS03440 PF03335 Phage tail fibre repeat DOE58_RS03485 PF04606 Ogr/Delta-like zinc finger DOE58_RS03495 PF03167 Uracil DNA glycosylase superfamily DOE58_RS03500 PF04539 Sigma-70 region 3 DOE58_RS03500 PF04542 Sigma-70 region 2 DOE58_RS03500 PF00140 Sigma-70 factor, region 1.2 DOE58_RS03500 PF04545 Sigma-70, region 4 DOE58_RS03500 PF03979 Sigma-70 factor, region 1.1 DOE58_RS03500 PF04546 Sigma-70, non-essential region DOE58_RS03505 PF10410 DnaB-helicase binding domain of primase DOE58_RS03505 PF08278 DNA primase DnaG DnaB-binding DOE58_RS03505 PF08275 DNA primase catalytic core, N-terminal domain DOE58_RS03505 PF01807 CHC2 zinc finger DOE58_RS03510 PF01165 Ribosomal protein S21 DOE58_RS03515 PF00814 Glycoprotease family DOE58_RS03525 PF02660 Glycerol-3-phosphate acyltransferase DOE58_RS03530 PF02152 Dihydroneopterin aldolase DOE58_RS03535 PF02673 Bacitracin resistance protein BacA DOE58_RS03540 PF01966 HD domain DOE58_RS03540 PF01743 Poly A polymerase head domain DOE58_RS03540 PF12627 Probable RNA and SrmB- binding site of polymerase A DOE58_RS03545 PF08239 Bacterial SH3 domain DOE58_RS03555 PF01928 CYTH domain DOE58_RS03560 PF03710 Glutamate-ammonia ligase adenylyltransferase DOE58_RS03560 PF08335 GlnD PII-uridylyltransferase DOE58_RS03565 PF00294 pfkB family carbohydrate kinase DOE58_RS03565 PF01467 Cytidylyltransferase-like DOE58_RS03575 PF15975 Flotillin DOE58_RS03575 PF01145 SPFH domain / Band 7 family DOE58_RS03580 PF07290 Protein of unknown function (DUF1449) DOE58_RS03585 PF08971 Glycogen synthesis protein DOE58_RS03590 PF04380 Membrane fusogenic activity DOE58_RS03595 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DOE58_RS03600 PF02600 Disulfide bond formation protein DsbB DOE58_RS03605 PF01323 DSBA-like thioredoxin domain DOE58_RS03610 PF17425 Arylsulfotransferase Ig-like domain DOE58_RS03610 PF05935 Arylsulfotransferase (ASST) DOE58_RS03620 PF02535 ZIP Zinc transporter DOE58_RS03625 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DOE58_RS03630 PF03738 Glutathionylspermidine synthase preATP-grasp DOE58_RS03635 PF06693 Protein of unknown function (DUF1190) DOE58_RS03645 PF02321 Outer membrane efflux protein DOE58_RS03650 PF00293 NUDIX domain DOE58_RS03655 PF06853 Protein of unknown function (DUF1249) DOE58_RS03660 PF00149 Calcineurin-like phosphoesterase DOE58_RS03665 PF05728 Uncharacterised protein family (UPF0227) DOE58_RS03670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS03670 PF00204 DNA gyrase B DOE58_RS03670 PF01751 Toprim domain DOE58_RS03670 PF00986 DNA gyrase B subunit, carboxyl terminus DOE58_RS03675 PF03992 Antibiotic biosynthesis monooxygenase DOE58_RS03680 PF02525 Flavodoxin-like fold DOE58_RS03685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS03685 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS03685 PF08521 Two-component sensor kinase N-terminal DOE58_RS03690 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS03690 PF00072 Response regulator receiver domain DOE58_RS03695 PF04076 Bacterial OB fold (BOF) protein DOE58_RS03700 PF06445 GyrI-like small molecule binding domain DOE58_RS03705 PF03989 DNA gyrase C-terminal domain, beta-propeller DOE58_RS03705 PF00521 DNA gyrase/topoisomerase IV, subunit A DOE58_RS03710 PF01553 Acyltransferase DOE58_RS03715 PF07731 Multicopper oxidase DOE58_RS03715 PF07732 Multicopper oxidase DOE58_RS03715 PF00394 Multicopper oxidase DOE58_RS03750 PF00939 Sodium:sulfate symporter transmembrane region DOE58_RS03755 PF00248 Aldo/keto reductase family DOE58_RS03760 PF00465 Iron-containing alcohol dehydrogenase DOE58_RS03765 PF12833 Helix-turn-helix domain DOE58_RS03765 PF06719 AraC-type transcriptional regulator N-terminus DOE58_RS03770 PF09335 SNARE associated Golgi protein DOE58_RS03775 PF01053 Cys/Met metabolism PLP-dependent enzyme DOE58_RS03785 PF01618 MotA/TolQ/ExbB proton channel family DOE58_RS03790 PF02472 Biopolymer transport protein ExbD/TolR DOE58_RS03815 PF03350 Uncharacterized protein family, UPF0114 DOE58_RS03820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE58_RS03820 PF02203 Tar ligand binding domain homologue DOE58_RS03820 PF00672 HAMP domain DOE58_RS03825 PF11115 Protein of unknown function (DUF2623) DOE58_RS03835 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOE58_RS03835 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DOE58_RS03840 PF13247 4Fe-4S dicluster domain DOE58_RS03845 PF03916 Polysulphide reductase, NrfD DOE58_RS03850 PF00374 Nickel-dependent hydrogenase DOE58_RS03855 PF01750 Hydrogenase maturation protease DOE58_RS03860 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE DOE58_RS03865 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DOE58_RS03870 PF01455 HupF/HypC family DOE58_RS03875 PF01497 Periplasmic binding protein DOE58_RS03885 PF02798 Glutathione S-transferase, N-terminal domain DOE58_RS03890 PF03738 Glutathionylspermidine synthase preATP-grasp DOE58_RS03890 PF05257 CHAP domain DOE58_RS03900 PF02614 Glucuronate isomerase DOE58_RS03905 PF08125 Mannitol dehydrogenase C-terminal domain DOE58_RS03905 PF01232 Mannitol dehydrogenase Rossmann domain DOE58_RS03910 PF03786 D-mannonate dehydratase (UxuA) DOE58_RS03920 PF07690 Major Facilitator Superfamily DOE58_RS03925 PF03573 outer membrane porin, OprD family DOE58_RS03935 PF00703 Glycosyl hydrolases family 2 DOE58_RS03935 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DOE58_RS03935 PF02837 Glycosyl hydrolases family 2, sugar binding domain DOE58_RS03940 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS03950 PF01522 Polysaccharide deacetylase DOE58_RS03965 PF04965 Gene 25-like lysozyme DOE58_RS03970 PF00171 Aldehyde dehydrogenase family DOE58_RS03975 PF01266 FAD dependent oxidoreductase DOE58_RS03985 PF13520 Amino acid permease DOE58_RS03995 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS04000 PF04055 Radical SAM superfamily DOE58_RS04005 PF00884 Sulfatase DOE58_RS04010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS04010 PF03466 LysR substrate binding domain DOE58_RS04015 PF03328 HpcH/HpaI aldolase/citrate lyase family DOE58_RS04020 PF01575 MaoC like domain DOE58_RS04025 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DOE58_RS04025 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DOE58_RS04030 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE58_RS04040 PF04474 Protein of unknown function (DUF554) DOE58_RS04050 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DOE58_RS04050 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DOE58_RS04050 PF01276 Orn/Lys/Arg decarboxylase, major domain DOE58_RS04055 PF03825 Nucleoside H+ symporter DOE58_RS04060 PF01464 Transglycosylase SLT domain DOE58_RS04060 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DOE58_RS04065 PF04362 Bacterial Fe(2+) trafficking DOE58_RS04070 PF00633 Helix-hairpin-helix motif DOE58_RS04070 PF14815 NUDIX domain DOE58_RS04070 PF00730 HhH-GPD superfamily base excision DNA repair protein DOE58_RS04080 PF02390 Putative methyltransferase DOE58_RS04085 PF04320 Protein with unknown function (DUF469) DOE58_RS04090 PF11101 Protein of unknown function (DUF2884) DOE58_RS04095 PF00710 Asparaginase, N-terminal DOE58_RS04095 PF17763 Glutaminase/Asparaginase C-terminal domain DOE58_RS04100 PF06717 Protein of unknown function (DUF1202) DOE58_RS04105 PF04055 Radical SAM superfamily DOE58_RS04105 PF06969 HemN C-terminal domain DOE58_RS04110 PF01725 Ham1 family DOE58_RS04115 PF02594 Uncharacterised ACR, YggU family COG1872 DOE58_RS04120 PF02325 YGGT family DOE58_RS04125 PF01168 Alanine racemase, N-terminal domain DOE58_RS04130 PF00437 Type II/IV secretion system protein DOE58_RS04140 PF03652 Holliday junction resolvase DOE58_RS04145 PF02622 Uncharacterized ACR, COG1678 DOE58_RS04150 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DOE58_RS04150 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DOE58_RS04155 PF04452 RNA methyltransferase DOE58_RS04160 PF04231 Endonuclease I DOE58_RS04165 PF10263 SprT-like family DOE58_RS04165 PF17283 SprT-like zinc ribbon domain DOE58_RS04170 PF00083 Sugar (and other) transporter DOE58_RS04175 PF02772 S-adenosylmethionine synthetase, central domain DOE58_RS04175 PF00438 S-adenosylmethionine synthetase, N-terminal domain DOE58_RS04175 PF02773 S-adenosylmethionine synthetase, C-terminal domain DOE58_RS04195 PF17810 Arginine decarboxylase helical bundle domain DOE58_RS04195 PF17944 Arginine decarboxylase C-terminal helical extension DOE58_RS04195 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DOE58_RS04200 PF00491 Arginase family DOE58_RS04210 PF01435 Peptidase family M48 DOE58_RS04215 PF02779 Transketolase, pyrimidine binding domain DOE58_RS04215 PF02780 Transketolase, C-terminal domain DOE58_RS04215 PF00456 Transketolase, thiamine diphosphate binding domain DOE58_RS04225 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE58_RS04230 PF02378 Phosphotransferase system, EIIC DOE58_RS04230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE58_RS04235 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS04235 PF00107 Zinc-binding dehydrogenase DOE58_RS04240 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DOE58_RS04250 PF05068 Mannitol repressor DOE58_RS04260 PF00005 ABC transporter DOE58_RS04265 PF00005 ABC transporter DOE58_RS04290 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DOE58_RS04290 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DOE58_RS04295 PF00162 Phosphoglycerate kinase DOE58_RS04300 PF01116 Fructose-bisphosphate aldolase class-II DOE58_RS04305 PF00924 Mechanosensitive ion channel DOE58_RS04305 PF05552 Conserved TM helix DOE58_RS04310 PF01810 LysE type translocator DOE58_RS04315 PF04402 Protein of unknown function (DUF541) DOE58_RS04320 PF03466 LysR substrate binding domain DOE58_RS04320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS04325 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DOE58_RS04330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE58_RS04330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOE58_RS04330 PF01842 ACT domain DOE58_RS04335 PF01812 5-formyltetrahydrofolate cyclo-ligase family DOE58_RS04345 PF05164 Cell division protein ZapA DOE58_RS04355 PF03695 Uncharacterised protein family (UPF0149) DOE58_RS04360 PF00557 Metallopeptidase family M24 DOE58_RS04360 PF05195 Aminopeptidase P, N-terminal domain DOE58_RS04365 PF01494 FAD binding domain DOE58_RS04370 PF01494 FAD binding domain DOE58_RS04375 PF08669 Glycine cleavage T-protein C-terminal barrel domain DOE58_RS04375 PF01571 Aminomethyltransferase folate-binding domain DOE58_RS04380 PF01597 Glycine cleavage H-protein DOE58_RS04385 PF02347 Glycine cleavage system P-protein DOE58_RS04400 PF00232 Glycosyl hydrolase family 1 DOE58_RS04405 PF04266 ASCH domain DOE58_RS04410 PF03006 Haemolysin-III related DOE58_RS04420 PF01571 Aminomethyltransferase folate-binding domain DOE58_RS04430 PF03937 Flavinator of succinate dehydrogenase DOE58_RS04435 PF07254 Membrane-bound toxin component of toxin-antitoxin system DOE58_RS04440 PF00258 Flavodoxin DOE58_RS04445 PF00589 Phage integrase family DOE58_RS04445 PF02899 Phage integrase, N-terminal SAM-like domain DOE58_RS04450 PF13098 Thioredoxin-like domain DOE58_RS04450 PF10411 Disulfide bond isomerase protein N-terminus DOE58_RS04455 PF02272 DHHA1 domain DOE58_RS04455 PF01368 DHH family DOE58_RS04455 PF17768 RecJ OB domain DOE58_RS04465 PF01336 OB-fold nucleic acid binding domain DOE58_RS04465 PF00152 tRNA synthetases class II (D, K and N) DOE58_RS04470 PF00293 NUDIX domain DOE58_RS04480 PF01476 LysM domain DOE58_RS04480 PF01551 Peptidase family M23 DOE58_RS04505 PF13505 Outer membrane protein beta-barrel domain DOE58_RS04515 PF00419 Fimbrial protein DOE58_RS04520 PF13954 PapC N-terminal domain DOE58_RS04520 PF13953 PapC C-terminal domain DOE58_RS04520 PF00577 Outer membrane usher protein DOE58_RS04525 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE58_RS04525 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS04545 PF03824 High-affinity nickel-transport protein DOE58_RS04550 PF02583 Metal-sensitive transcriptional repressor DOE58_RS04555 PF03222 Tryptophan/tyrosine permease family DOE58_RS04565 PF03466 LysR substrate binding domain DOE58_RS04565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS04570 PF00108 Thiolase, N-terminal domain DOE58_RS04570 PF02803 Thiolase, C-terminal domain DOE58_RS04580 PF04962 KduI/IolB family DOE58_RS04590 PF00083 Sugar (and other) transporter DOE58_RS04595 PF01177 Asp/Glu/Hydantoin racemase DOE58_RS04600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS04600 PF03466 LysR substrate binding domain DOE58_RS04605 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DOE58_RS04605 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DOE58_RS04610 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS04615 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS04630 PF01553 Acyltransferase DOE58_RS04630 PF00501 AMP-binding enzyme DOE58_RS04635 PF07690 Major Facilitator Superfamily DOE58_RS04640 PF00248 Aldo/keto reductase family DOE58_RS04645 PF06004 Bacterial protein of unknown function (DUF903) DOE58_RS04650 PF03741 Integral membrane protein TerC family DOE58_RS04655 PF02976 DNA mismatch repair enzyme MutH DOE58_RS04660 PF00293 NUDIX domain DOE58_RS04665 PF05524 PEP-utilising enzyme, N-terminal DOE58_RS04665 PF02896 PEP-utilising enzyme, TIM barrel domain DOE58_RS04665 PF01590 GAF domain DOE58_RS04665 PF00391 PEP-utilising enzyme, mobile domain DOE58_RS04670 PF01790 Prolipoprotein diacylglyceryl transferase DOE58_RS04675 PF00303 Thymidylate synthase DOE58_RS04685 PF07963 Prokaryotic N-terminal methylation motif DOE58_RS04690 PF07963 Prokaryotic N-terminal methylation motif DOE58_RS04695 PF10713 Protein of unknown function (DUF2509) DOE58_RS04700 PF12528 Type II secretion prepilin peptidase dependent protein C DOE58_RS04700 PF07963 Prokaryotic N-terminal methylation motif DOE58_RS04705 PF17946 RecC C-terminal domain DOE58_RS04710 PF00675 Insulinase (Peptidase family M16) DOE58_RS04710 PF05193 Peptidase M16 inactive domain DOE58_RS04710 PF16187 Middle or third domain of peptidase_M16 DOE58_RS04715 PF12705 PD-(D/E)XK nuclease superfamily DOE58_RS04715 PF00580 UvrD/REP helicase N-terminal domain DOE58_RS04715 PF13361 UvrD-like helicase C-terminal domain DOE58_RS04720 PF13538 UvrD-like helicase C-terminal domain DOE58_RS04725 PF00583 Acetyltransferase (GNAT) family DOE58_RS04725 PF00696 Amino acid kinase family DOE58_RS04730 PF11741 AMIN domain DOE58_RS04730 PF01520 N-acetylmuramoyl-L-alanine amidase DOE58_RS04740 PF03562 MltA specific insert domain DOE58_RS04740 PF06725 3D domain DOE58_RS04745 PF00899 ThiF family DOE58_RS04750 PF00892 EamA-like transporter family DOE58_RS04755 PF02657 Fe-S metabolism associated domain DOE58_RS04760 PF00266 Aminotransferase class-V DOE58_RS04765 PF06004 Bacterial protein of unknown function (DUF903) DOE58_RS04770 PF03466 LysR substrate binding domain DOE58_RS04770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS04775 PF04241 Protein of unknown function (DUF423) DOE58_RS04780 PF01728 FtsJ-like methyltransferase DOE58_RS04780 PF18125 RlmM ferredoxin-like domain DOE58_RS04785 PF08220 DeoR-like helix-turn-helix domain DOE58_RS04785 PF00455 DeoR C terminal sensor domain DOE58_RS04790 PF05025 RbsD / FucU transport protein family DOE58_RS04795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE58_RS04795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE58_RS04800 PF02952 L-fucose isomerase, C-terminal domain DOE58_RS04800 PF07882 L-fucose isomerase, second N-terminal domain DOE58_RS04800 PF07881 L-fucose isomerase, first N-terminal domain DOE58_RS04805 PF07690 Major Facilitator Superfamily DOE58_RS04810 PF00596 Class II Aldolase and Adducin N-terminal domain DOE58_RS04815 PF00465 Iron-containing alcohol dehydrogenase DOE58_RS04820 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DOE58_RS04820 PF01367 5'-3' exonuclease, C-terminal SAM fold DOE58_RS04830 PF03313 Serine dehydratase alpha chain DOE58_RS04830 PF03315 Serine dehydratase beta chain DOE58_RS04840 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DOE58_RS04840 PF11892 Domain of unknown function (DUF3412) DOE58_RS04840 PF03641 Possible lysine decarboxylase DOE58_RS04845 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DOE58_RS04845 PF14489 QueF-like protein DOE58_RS04850 PF07348 Syd protein (SUKH-2) DOE58_RS04860 PF04287 tRNA pseudouridine synthase C DOE58_RS04865 PF00849 RNA pseudouridylate synthase DOE58_RS04870 PF00258 Flavodoxin DOE58_RS04880 PF07690 Major Facilitator Superfamily DOE58_RS04885 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOE58_RS04885 PF13378 Enolase C-terminal domain-like DOE58_RS04890 PF13378 Enolase C-terminal domain-like DOE58_RS04895 PF02595 Glycerate kinase family DOE58_RS04900 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS04900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS04900 PF00672 HAMP domain DOE58_RS04900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DOE58_RS04900 PF01627 Hpt domain DOE58_RS04900 PF00072 Response regulator receiver domain DOE58_RS04905 PF05958 tRNA (Uracil-5-)-methyltransferase DOE58_RS04905 PF01938 TRAM domain DOE58_RS04910 PF13291 ACT domain DOE58_RS04910 PF04607 Region found in RelA / SpoT proteins DOE58_RS04910 PF02824 TGS domain DOE58_RS04915 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH DOE58_RS04930 PF03819 MazG nucleotide pyrophosphohydrolase domain DOE58_RS04935 PF00117 Glutamine amidotransferase class-I DOE58_RS04935 PF06418 CTP synthase N-terminus DOE58_RS04940 PF00113 Enolase, C-terminal TIM barrel domain DOE58_RS04940 PF03952 Enolase, N-terminal domain DOE58_RS04945 PF04055 Radical SAM superfamily DOE58_RS04950 PF03099 Biotin/lipoate A/B protein ligase family DOE58_RS04950 PF12706 Beta-lactamase superfamily domain DOE58_RS04955 PF01242 6-pyruvoyl tetrahydropterin synthase DOE58_RS04965 PF00667 FAD binding domain DOE58_RS04965 PF00258 Flavodoxin DOE58_RS04965 PF00175 Oxidoreductase NAD-binding domain DOE58_RS04970 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DOE58_RS04970 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DOE58_RS04980 PF01507 Phosphoadenosine phosphosulfate reductase family DOE58_RS04985 PF11047 Salmonella outer protein D DOE58_RS04990 PF00271 Helicase conserved C-terminal domain DOE58_RS04990 PF00270 DEAD/DEAH box helicase DOE58_RS04990 PF18019 HD domain DOE58_RS04995 PF04389 Peptidase family M28 DOE58_RS05000 PF01507 Phosphoadenosine phosphosulfate reductase family DOE58_RS05005 PF00009 Elongation factor Tu GTP binding domain DOE58_RS05015 PF12084 Protein of unknown function (DUF3561) DOE58_RS05020 PF04977 Septum formation initiator DOE58_RS05025 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DOE58_RS05030 PF02542 YgbB family DOE58_RS05035 PF01142 tRNA pseudouridine synthase D (TruD) DOE58_RS05040 PF01975 Survival protein SurE DOE58_RS05050 PF01551 Peptidase family M23 DOE58_RS05050 PF01476 LysM domain DOE58_RS05055 PF04539 Sigma-70 region 3 DOE58_RS05055 PF04542 Sigma-70 region 2 DOE58_RS05055 PF00140 Sigma-70 factor, region 1.2 DOE58_RS05055 PF04545 Sigma-70, region 4 DOE58_RS05065 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DOE58_RS05070 PF02441 Flavoprotein DOE58_RS05075 PF01047 MarR family DOE58_RS05080 PF08220 DeoR-like helix-turn-helix domain DOE58_RS05080 PF00455 DeoR C terminal sensor domain DOE58_RS05085 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOE58_RS05085 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DOE58_RS05090 PF17042 Nucleotide-binding C-terminal domain DOE58_RS05090 PF07005 Sugar-binding N-terminal domain DOE58_RS05095 PF00596 Class II Aldolase and Adducin N-terminal domain DOE58_RS05100 PF01261 Xylose isomerase-like TIM barrel DOE58_RS05105 PF01370 NAD dependent epimerase/dehydratase family DOE58_RS05110 PF02447 GntP family permease DOE58_RS05115 PF03466 LysR substrate binding domain DOE58_RS05115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS05120 PF07690 Major Facilitator Superfamily DOE58_RS05130 PF05190 MutS family domain IV DOE58_RS05130 PF05192 MutS domain III DOE58_RS05130 PF05188 MutS domain II DOE58_RS05130 PF01624 MutS domain I DOE58_RS05130 PF00488 MutS domain V DOE58_RS05145 PF00149 Calcineurin-like phosphoesterase DOE58_RS05170 PF04741 InvH outer membrane lipoprotein DOE58_RS05175 PF12833 Helix-turn-helix domain DOE58_RS05180 PF00263 Bacterial type II and III secretion system protein DOE58_RS05180 PF03958 Bacterial type II/III secretion system short domain DOE58_RS05185 PF07201 HrpJ-like domain DOE58_RS05190 PF00771 FHIPEP family DOE58_RS05195 PF03519 Invasion protein B family DOE58_RS05200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE58_RS05200 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOE58_RS05200 PF18269 T3SS EscN ATPase C-terminal domain DOE58_RS05205 PF02090 Salmonella surface presentation of antigen gene type M protein DOE58_RS05210 PF02510 Surface presentation of antigens protein DOE58_RS05215 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOE58_RS05220 PF00813 FliP family DOE58_RS05225 PF01313 Bacterial export proteins, family 3 DOE58_RS05250 PF01312 FlhB HrpN YscU SpaS Family DOE58_RS05255 PF07720 Tetratricopeptide repeat DOE58_RS05260 PF04888 Secretion system effector C (SseC) like family DOE58_RS05260 PF16535 Type III cell invasion protein SipB DOE58_RS05265 PF09599 Salmonella-Shigella invasin protein C (IpaC_SipC) DOE58_RS05270 PF06511 Type III secretion systems tip complex components DOE58_RS05275 PF09052 SipA N-terminal domain DOE58_RS05280 PF00550 Phosphopantetheine attachment site DOE58_RS05290 PF05932 Tir chaperone protein (CesT) family DOE58_RS05295 PF09119 SicP binding DOE58_RS05295 PF03545 Yersinia virulence determinant (YopE) DOE58_RS05295 PF00102 Protein-tyrosine phosphatase DOE58_RS05300 PF01464 Transglycosylase SLT domain DOE58_RS05305 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS05310 PF12833 Helix-turn-helix domain DOE58_RS05315 PF09480 Type III secretion system protein PrgH-EprH (PrgH) DOE58_RS05320 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF DOE58_RS05330 PF01514 Secretory protein of YscJ/FliF family DOE58_RS05335 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) DOE58_RS05350 PF12833 Helix-turn-helix domain DOE58_RS05390 PF00950 ABC 3 transport family DOE58_RS05395 PF00950 ABC 3 transport family DOE58_RS05400 PF00005 ABC transporter DOE58_RS05405 PF01297 Zinc-uptake complex component A periplasmic DOE58_RS05410 PF11756 Nitrous oxide-stimulated promoter DOE58_RS05415 PF02954 Bacterial regulatory protein, Fis family DOE58_RS05415 PF01590 GAF domain DOE58_RS05415 PF00158 Sigma-54 interaction domain DOE58_RS05420 PF02769 AIR synthase related protein, C-terminal domain DOE58_RS05420 PF00586 AIR synthase related protein, N-terminal domain DOE58_RS05425 PF01924 Hydrogenase formation hypA family DOE58_RS05430 PF01455 HupF/HypC family DOE58_RS05435 PF02492 CobW/HypB/UreG, nucleotide-binding domain DOE58_RS05440 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DOE58_RS05450 PF11046 Transcriptional repressor of hyc and hyp operons DOE58_RS05455 PF13247 4Fe-4S dicluster domain DOE58_RS05460 PF00361 Proton-conducting membrane transporter DOE58_RS05465 PF00146 NADH dehydrogenase DOE58_RS05470 PF00374 Nickel-dependent hydrogenase DOE58_RS05470 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DOE58_RS05470 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DOE58_RS05475 PF12838 4Fe-4S dicluster domain DOE58_RS05480 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOE58_RS05485 PF07450 Formate hydrogenlyase maturation protein HycH DOE58_RS05490 PF01750 Hydrogenase maturation protease DOE58_RS05500 PF13247 4Fe-4S dicluster domain DOE58_RS05500 PF12800 4Fe-4S binding domain DOE58_RS05505 PF01300 Telomere recombination DOE58_RS05505 PF17788 HypF Kae1-like domain DOE58_RS05505 PF00708 Acylphosphatase DOE58_RS05505 PF07503 HypF finger DOE58_RS05510 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS05510 PF18113 Rubredoxin binding C-terminal domain DOE58_RS05515 PF00753 Metallo-beta-lactamase superfamily DOE58_RS05515 PF00301 Rubredoxin DOE58_RS05515 PF00258 Flavodoxin DOE58_RS05520 PF00158 Sigma-54 interaction domain DOE58_RS05520 PF01590 GAF domain DOE58_RS05525 PF01380 SIS domain DOE58_RS05525 PF00571 CBS domain DOE58_RS05530 PF08220 DeoR-like helix-turn-helix domain DOE58_RS05530 PF00455 DeoR C terminal sensor domain DOE58_RS05535 PF06923 Glucitol operon activator protein (GutM) DOE58_RS05540 PF00106 short chain dehydrogenase DOE58_RS05545 PF03829 PTS system glucitol/sorbitol-specific IIA component DOE58_RS05550 PF03612 Sorbitol phosphotransferase enzyme II N-terminus DOE58_RS05550 PF07663 Sorbitol phosphotransferase enzyme II C-terminus DOE58_RS05555 PF03608 PTS system enzyme II sorbitol-specific factor DOE58_RS05560 PF13406 Transglycosylase SLT domain DOE58_RS05570 PF02464 Competence-damaged protein DOE58_RS05575 PF00154 recA bacterial DNA recombination protein DOE58_RS05580 PF02631 RecX family DOE58_RS05590 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DOE58_RS05590 PF02272 DHHA1 domain DOE58_RS05590 PF01411 tRNA synthetases class II (A) DOE58_RS05595 PF02599 Global regulator protein family DOE58_RS05630 PF13419 Haloacid dehalogenase-like hydrolase DOE58_RS05635 PF09335 SNARE associated Golgi protein DOE58_RS05640 PF04262 Glutamate-cysteine ligase DOE58_RS05645 PF02664 S-Ribosylhomocysteinase (LuxS) DOE58_RS05655 PF07690 Major Facilitator Superfamily DOE58_RS05660 PF00529 HlyD membrane-fusion protein of T1SS DOE58_RS05660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE58_RS05665 PF01047 MarR family DOE58_RS05670 PF07690 Major Facilitator Superfamily DOE58_RS05675 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DOE58_RS05680 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS05685 PF00571 CBS domain DOE58_RS05685 PF00005 ABC transporter DOE58_RS05695 PF00268 Ribonucleotide reductase, small chain DOE58_RS05700 PF02867 Ribonucleotide reductase, barrel domain DOE58_RS05700 PF00317 Ribonucleotide reductase, all-alpha domain DOE58_RS05700 PF08343 Ribonucleotide reductase N-terminal DOE58_RS05705 PF07972 NrdI Flavodoxin like DOE58_RS05710 PF00462 Glutaredoxin DOE58_RS05720 PF02627 Carboxymuconolactone decarboxylase family DOE58_RS05725 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS05725 PF00155 Aminotransferase class I and II DOE58_RS05730 PF05957 Bacterial protein of unknown function (DUF883) DOE58_RS05735 PF09400 Protein of unknown function (DUF2002) DOE58_RS05740 PF06610 L-alanine exporter DOE58_RS05750 PF00816 H-NS histone family DOE58_RS05760 PF11127 Protein of unknown function (DUF2892) DOE58_RS05760 PF00581 Rhodanese-like domain DOE58_RS05765 PF01022 Bacterial regulatory protein, arsR family DOE58_RS05770 PF01679 Proteolipid membrane potential modulator DOE58_RS05780 PF01476 LysM domain DOE58_RS05780 PF04972 BON domain DOE58_RS05785 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS05785 PF07729 FCD domain DOE58_RS05790 PF00324 Amino acid permease DOE58_RS05795 PF00202 Aminotransferase class-III DOE58_RS05800 PF00171 Aldehyde dehydrogenase family DOE58_RS05805 PF01266 FAD dependent oxidoreductase DOE58_RS05810 PF08943 CsiD DOE58_RS05815 PF01970 Tripartite tricarboxylate transporter TctA family DOE58_RS05830 PF00072 Response regulator receiver domain DOE58_RS05830 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS05835 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS05835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS05840 PF03824 High-affinity nickel-transport protein DOE58_RS05855 PF04393 Protein of unknown function (DUF535) DOE58_RS05860 PF00805 Pentapeptide repeats (8 copies) DOE58_RS05870 PF07715 TonB-dependent Receptor Plug Domain DOE58_RS05870 PF00593 TonB dependent receptor DOE58_RS05875 PF00756 Putative esterase DOE58_RS05885 PF00664 ABC transporter transmembrane region DOE58_RS05885 PF00005 ABC transporter DOE58_RS05890 PF06722 Protein of unknown function (DUF1205) DOE58_RS05895 PF00239 Resolvase, N terminal domain DOE58_RS05895 PF02796 Helix-turn-helix domain of resolvase DOE58_RS05900 PF08884 Flagellin D3 domain DOE58_RS05900 PF00669 Bacterial flagellin N-terminal helical region DOE58_RS05900 PF00700 Bacterial flagellin C-terminal helical region DOE58_RS05905 PF03614 Repressor of phase-1 flagellin DOE58_RS05935 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DOE58_RS06005 PF04917 Bacterial shufflon protein, N-terminal constant region DOE58_RS06020 PF13356 Arm DNA-binding domain DOE58_RS06020 PF00589 Phage integrase family DOE58_RS06030 PF00529 HlyD membrane-fusion protein of T1SS DOE58_RS06030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE58_RS06035 PF00664 ABC transporter transmembrane region DOE58_RS06035 PF00005 ABC transporter DOE58_RS06050 PF01668 SmpB protein DOE58_RS06055 PF03364 Polyketide cyclase / dehydrase and lipid transport DOE58_RS06060 PF03658 RnfH family Ubiquitin DOE58_RS06065 PF04355 SmpA / OmlA family DOE58_RS06070 PF02463 RecF/RecN/SMC N terminal domain DOE58_RS06075 PF01513 ATP-NAD kinase DOE58_RS06085 PF01025 GrpE DOE58_RS06095 PF00571 CBS domain DOE58_RS06095 PF03471 Transporter associated domain DOE58_RS06095 PF01595 Cyclin M transmembrane N-terminal domain DOE58_RS06100 PF01578 Cytochrome C assembly protein DOE58_RS06110 PF02881 SRP54-type protein, helical bundle domain DOE58_RS06110 PF00448 SRP54-type protein, GTPase domain DOE58_RS06110 PF02978 Signal peptide binding domain DOE58_RS06115 PF00886 Ribosomal protein S16 DOE58_RS06120 PF01782 RimM N-terminal domain DOE58_RS06120 PF05239 PRC-barrel domain DOE58_RS06125 PF01746 tRNA (Guanine-1)-methyltransferase DOE58_RS06130 PF01245 Ribosomal protein L19 DOE58_RS06135 PF17152 Periplasmic sensor domain DOE58_RS06135 PF00990 Diguanylate cyclase, GGDEF domain DOE58_RS06140 PF13689 YfiR/HmsC-like DOE58_RS06145 PF00793 DAHP synthetase I family DOE58_RS06150 PF01817 Chorismate mutase type II DOE58_RS06150 PF02153 Prephenate dehydrogenase DOE58_RS06155 PF08450 SMP-30/Gluconolactonase/LRE-like region DOE58_RS06160 PF01817 Chorismate mutase type II DOE58_RS06160 PF00800 Prephenate dehydratase DOE58_RS06170 PF00589 Phage integrase family DOE58_RS06170 PF02899 Phage integrase, N-terminal SAM-like domain DOE58_RS06305 PF07484 Phage Tail Collar Domain DOE58_RS06305 PF08400 Prophage tail fibre N-terminal DOE58_RS06305 PF03335 Phage tail fibre repeat DOE58_RS06330 PF02463 RecF/RecN/SMC N terminal domain DOE58_RS06330 PF06470 SMC proteins Flexible Hinge Domain DOE58_RS06340 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DOE58_RS06345 PF13525 Outer membrane lipoprotein DOE58_RS06350 PF01479 S4 domain DOE58_RS06350 PF00849 RNA pseudouridylate synthase DOE58_RS06355 PF02578 Multi-copper polyphenol oxidoreductase laccase DOE58_RS06360 PF07724 AAA domain (Cdc48 subfamily) DOE58_RS06360 PF17871 AAA lid domain DOE58_RS06360 PF02861 Clp amino terminal domain, pathogenicity island component DOE58_RS06360 PF10431 C-terminal, D2-small domain, of ClpB protein DOE58_RS06360 PF00004 ATPase family associated with various cellular activities (AAA) DOE58_RS06395 PF00083 Sugar (and other) transporter DOE58_RS06400 PF10043 Predicted periplasmic lipoprotein (DUF2279) DOE58_RS06405 PF13091 PLD-like domain DOE58_RS06410 PF13380 CoA binding domain DOE58_RS06410 PF00583 Acetyltransferase (GNAT) family DOE58_RS06410 PF13607 Succinyl-CoA ligase like flavodoxin domain DOE58_RS06415 PF03942 DTW domain DOE58_RS06420 PF00085 Thioredoxin DOE58_RS06425 PF00588 SpoU rRNA Methylase family DOE58_RS06425 PF08032 RNA 2'-O ribose methyltransferase substrate binding DOE58_RS06430 PF03167 Uracil DNA glycosylase superfamily DOE58_RS06435 PF01228 Glycine radical DOE58_RS06440 PF01810 LysE type translocator DOE58_RS06445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS06445 PF03466 LysR substrate binding domain DOE58_RS06450 PF00271 Helicase conserved C-terminal domain DOE58_RS06450 PF00270 DEAD/DEAH box helicase DOE58_RS06455 PF05175 Methyltransferase small domain DOE58_RS06460 PF00890 FAD binding domain DOE58_RS06460 PF02910 Fumarate reductase flavoprotein C-term DOE58_RS06470 PF04542 Sigma-70 region 2 DOE58_RS06470 PF08281 Sigma-70, region 4 DOE58_RS06475 PF03873 Anti sigma-E protein RseA, C-terminal domain DOE58_RS06475 PF03872 Anti sigma-E protein RseA, N-terminal domain DOE58_RS06480 PF17188 MucB/RseB C-terminal domain DOE58_RS06480 PF03888 MucB/RseB N-terminal domain DOE58_RS06495 PF06421 GTP-binding protein LepA C-terminus DOE58_RS06495 PF03144 Elongation factor Tu domain 2 DOE58_RS06495 PF00009 Elongation factor Tu GTP binding domain DOE58_RS06495 PF00679 Elongation factor G C-terminus DOE58_RS06500 PF10502 Signal peptidase, peptidase S26 DOE58_RS06510 PF14622 Ribonuclease-III-like DOE58_RS06510 PF00035 Double-stranded RNA binding motif DOE58_RS06515 PF07650 KH domain DOE58_RS06515 PF01926 50S ribosome-binding GTPase DOE58_RS06520 PF02565 Recombination protein O C terminal DOE58_RS06520 PF11967 Recombination protein O N terminal DOE58_RS06525 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DOE58_RS06530 PF01648 4'-phosphopantetheinyl transferase superfamily DOE58_RS06535 PF12838 4Fe-4S dicluster domain DOE58_RS06540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS06540 PF03466 LysR substrate binding domain DOE58_RS06545 PF07690 Major Facilitator Superfamily DOE58_RS06550 PF02558 Ketopantoate reductase PanE/ApbA DOE58_RS06550 PF08546 Ketopantoate reductase PanE/ApbA C terminal DOE58_RS06555 PF01418 Helix-turn-helix domain, rpiR family DOE58_RS06555 PF01380 SIS domain DOE58_RS06560 PF01380 SIS domain DOE58_RS06565 PF02378 Phosphotransferase system, EIIC DOE58_RS06565 PF00367 phosphotransferase system, EIIB DOE58_RS06575 PF14437 MafB19-like deaminase DOE58_RS06580 PF01464 Transglycosylase SLT domain DOE58_RS06580 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE58_RS06590 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DOE58_RS06590 PF02769 AIR synthase related protein, C-terminal domain DOE58_RS06590 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DOE58_RS06595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS06595 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS06600 PF13942 YfhG lipoprotein DOE58_RS06605 PF00072 Response regulator receiver domain DOE58_RS06605 PF00158 Sigma-54 interaction domain DOE58_RS06610 PF00543 Nitrogen regulatory protein P-II DOE58_RS06615 PF00854 POT family DOE58_RS06620 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DOE58_RS06620 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DOE58_RS06620 PF01276 Orn/Lys/Arg decarboxylase, major domain DOE58_RS06625 PF13520 Amino acid permease DOE58_RS06630 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS06630 PF18500 CadC C-terminal domain 1 DOE58_RS06635 PF00175 Oxidoreductase NAD-binding domain DOE58_RS06635 PF00042 Globin DOE58_RS06635 PF00970 Oxidoreductase FAD-binding domain DOE58_RS06640 PF00464 Serine hydroxymethyltransferase DOE58_RS06645 PF12832 MFS_1 like family DOE58_RS06650 PF00874 PRD domain DOE58_RS06660 PF03824 High-affinity nickel-transport protein DOE58_RS06665 PF13187 4Fe-4S dicluster domain DOE58_RS06665 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DOE58_RS06665 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DOE58_RS06670 PF00175 Oxidoreductase NAD-binding domain DOE58_RS06670 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DOE58_RS06675 PF17179 4Fe-4S dicluster domain DOE58_RS06685 PF00459 Inositol monophosphatase family DOE58_RS06690 PF00588 SpoU rRNA Methylase family DOE58_RS06695 PF02082 Transcriptional regulator DOE58_RS06700 PF00266 Aminotransferase class-V DOE58_RS06705 PF01592 NifU-like N terminal domain DOE58_RS06710 PF01521 Iron-sulphur cluster biosynthesis DOE58_RS06715 PF07743 HSCB C-terminal oligomerisation domain DOE58_RS06720 PF00012 Hsp70 protein DOE58_RS06725 PF00111 2Fe-2S iron-sulfur cluster binding domain DOE58_RS06730 PF04384 Iron-sulphur cluster assembly DOE58_RS06735 PF00883 Cytosol aminopeptidase family, catalytic domain DOE58_RS06735 PF12404 Peptidase DOE58_RS06745 PF14581 SseB protein C-terminal domain DOE58_RS06745 PF07179 SseB protein N-terminal domain DOE58_RS06755 PF00581 Rhodanese-like domain DOE58_RS06760 PF00207 Alpha-2-macroglobulin family DOE58_RS06760 PF07703 Alpha-2-macroglobulin bait region domain DOE58_RS06760 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain DOE58_RS06760 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DOE58_RS06760 PF17962 Bacterial macroglobulin domain 6 DOE58_RS06760 PF11974 Bacterial alpha-2-macroglobulin MG3 domain DOE58_RS06760 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain DOE58_RS06760 PF01835 MG2 domain DOE58_RS06760 PF07678 A-macroglobulin TED domain DOE58_RS06765 PF06832 Penicillin-Binding Protein C-terminus Family DOE58_RS06765 PF00905 Penicillin binding protein transpeptidase domain DOE58_RS06765 PF00912 Transglycosylase DOE58_RS06770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS06770 PF00384 Molybdopterin oxidoreductase DOE58_RS06770 PF01568 Molydopterin dinucleotide binding domain DOE58_RS06775 PF12800 4Fe-4S binding domain DOE58_RS06775 PF13247 4Fe-4S dicluster domain DOE58_RS06790 PF00334 Nucleoside diphosphate kinase DOE58_RS06795 PF04055 Radical SAM superfamily DOE58_RS06805 PF13464 Domain of unknown function (DUF4115) DOE58_RS06810 PF04551 GcpE protein DOE58_RS06815 PF03129 Anticodon binding domain DOE58_RS06815 PF13393 Histidyl-tRNA synthetase DOE58_RS06820 PF09976 Tetratricopeptide repeat-like domain DOE58_RS06825 PF13360 PQQ-like domain DOE58_RS06830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DOE58_RS06830 PF01926 50S ribosome-binding GTPase DOE58_RS06835 PF07191 zinc-ribbons DOE58_RS06840 PF02369 Bacterial Ig-like domain (group 1) DOE58_RS06840 PF02368 Bacterial Ig-like domain (group 2) DOE58_RS06840 PF11924 Inverse autotransporter, beta-domain DOE58_RS06840 PF01476 LysM domain DOE58_RS06840 PF07979 Intimin C-type lectin domain DOE58_RS06865 PF03797 Autotransporter beta-domain DOE58_RS06870 PF13742 OB-fold nucleic acid binding domain DOE58_RS06870 PF02601 Exonuclease VII, large subunit DOE58_RS06875 PF00478 IMP dehydrogenase / GMP reductase domain DOE58_RS06875 PF00571 CBS domain DOE58_RS06880 PF02540 NAD synthase DOE58_RS06880 PF00958 GMP synthase C terminal domain DOE58_RS06880 PF00117 Glutamine amidotransferase class-I DOE58_RS06900 PF11119 Protein of unknown function (DUF2633) DOE58_RS06910 PF00563 EAL domain DOE58_RS06910 PF05231 MASE1 DOE58_RS06915 PF02541 Ppx/GppA phosphatase family DOE58_RS06920 PF13089 Polyphosphate kinase N-terminal domain DOE58_RS06920 PF17941 Polyphosphate kinase C-terminal domain 1 DOE58_RS06920 PF02503 Polyphosphate kinase middle domain DOE58_RS06920 PF13090 Polyphosphate kinase C-terminal domain 2 DOE58_RS06925 PF00551 Formyl transferase DOE58_RS06930 PF02769 AIR synthase related protein, C-terminal domain DOE58_RS06930 PF00586 AIR synthase related protein, N-terminal domain DOE58_RS06940 PF00860 Permease family DOE58_RS06945 PF00308 Bacterial dnaA protein DOE58_RS06950 PF03960 ArsC family DOE58_RS06955 PF01435 Peptidase family M48 DOE58_RS06960 PF01594 AI-2E family transporter DOE58_RS06965 PF05651 Putative sugar diacid recognition DOE58_RS06965 PF17853 GGDEF-like domain DOE58_RS06965 PF13556 PucR C-terminal helix-turn-helix domain DOE58_RS06970 PF02447 GntP family permease DOE58_RS06975 PF02595 Glycerate kinase family DOE58_RS06980 PF00578 AhpC/TSA family DOE58_RS06985 PF01842 ACT domain DOE58_RS06990 PF00701 Dihydrodipicolinate synthetase family DOE58_RS06995 PF06804 NlpB/DapX lipoprotein DOE58_RS07000 PF01259 SAICAR synthetase DOE58_RS07005 PF04228 Putative neutral zinc metallopeptidase DOE58_RS07010 PF17176 tRNA-binding domain DOE58_RS07010 PF05127 Helicase DOE58_RS07010 PF08351 Domain of unknown function (DUF1726) DOE58_RS07010 PF13718 GNAT acetyltransferase 2 DOE58_RS07015 PF13980 Uncharacterised protein family (UPF0370) DOE58_RS07020 PF07687 Peptidase dimerisation domain DOE58_RS07020 PF01546 Peptidase family M20/M25/M40 DOE58_RS07025 PF03960 ArsC family DOE58_RS07035 PF00873 AcrB/AcrD/AcrF family DOE58_RS07040 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DOE58_RS07040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS07040 PF00672 HAMP domain DOE58_RS07040 PF07730 Histidine kinase DOE58_RS07050 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS07050 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DOE58_RS07050 PF13247 4Fe-4S dicluster domain DOE58_RS07060 PF00144 Beta-lactamase DOE58_RS07065 PF00293 NUDIX domain DOE58_RS07070 PF06674 Protein of unknown function (DUF1176) DOE58_RS07080 PF02779 Transketolase, pyrimidine binding domain DOE58_RS07080 PF02780 Transketolase, C-terminal domain DOE58_RS07080 PF00456 Transketolase, thiamine diphosphate binding domain DOE58_RS07085 PF00923 Transaldolase/Fructose-6-phosphate aldolase DOE58_RS07095 PF03949 Malic enzyme, NAD binding domain DOE58_RS07095 PF00390 Malic enzyme, N-terminal domain DOE58_RS07095 PF01515 Phosphate acetyl/butaryl transferase DOE58_RS07100 PF00936 BMC domain DOE58_RS07105 PF10662 Ethanolamine utilisation - propanediol utilisation DOE58_RS07110 PF06249 Ethanolamine utilisation protein EutQ DOE58_RS07115 PF01923 Cobalamin adenosyltransferase DOE58_RS07120 PF01515 Phosphate acetyl/butaryl transferase DOE58_RS07125 PF00936 BMC domain DOE58_RS07130 PF03319 Ethanolamine utilisation protein EutN/carboxysome DOE58_RS07135 PF00171 Aldehyde dehydrogenase family DOE58_RS07145 PF00465 Iron-containing alcohol dehydrogenase DOE58_RS07150 PF04346 Ethanolamine utilisation protein, EutH DOE58_RS07155 PF06277 Ethanolamine utilisation protein EutA DOE58_RS07160 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DOE58_RS07165 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DOE58_RS07170 PF00936 BMC domain DOE58_RS07175 PF00936 BMC domain DOE58_RS07175 PF16365 Ethanolamine utilization protein EutK C-terminus DOE58_RS07180 PF12833 Helix-turn-helix domain DOE58_RS07185 PF01218 Coproporphyrinogen III oxidase DOE58_RS07190 PF01520 N-acetylmuramoyl-L-alanine amidase DOE58_RS07195 PF00583 Acetyltransferase (GNAT) family DOE58_RS07200 PF11143 Protein of unknown function (DUF2919) DOE58_RS07205 PF06572 Protein of unknown function (DUF1131) DOE58_RS07210 PF04261 Dyp-type peroxidase family DOE58_RS07225 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS07230 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS07235 PF00005 ABC transporter DOE58_RS07240 PF00291 Pyridoxal-phosphate dependent enzyme DOE58_RS07245 PF17263 Family of unknown function (DUF5329) DOE58_RS07250 PF00117 Glutamine amidotransferase class-I DOE58_RS07255 PF00155 Aminotransferase class I and II DOE58_RS07255 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS07260 PF08543 Phosphomethylpyrimidine kinase DOE58_RS07270 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DOE58_RS07275 PF02896 PEP-utilising enzyme, TIM barrel domain DOE58_RS07275 PF00391 PEP-utilising enzyme, mobile domain DOE58_RS07275 PF05524 PEP-utilising enzyme, N-terminal DOE58_RS07280 PF00381 PTS HPr component phosphorylation site DOE58_RS07285 PF00291 Pyridoxal-phosphate dependent enzyme DOE58_RS07295 PF04354 ZipA, C-terminal FtsZ-binding domain DOE58_RS07300 PF01653 NAD-dependent DNA ligase adenylation domain DOE58_RS07300 PF00533 BRCA1 C Terminus (BRCT) domain DOE58_RS07300 PF12826 Helix-hairpin-helix motif DOE58_RS07300 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DOE58_RS07300 PF03120 NAD-dependent DNA ligase OB-fold domain DOE58_RS07305 PF12843 Putative quorum-sensing-regulated virulence factor DOE58_RS07310 PF13593 SBF-like CPA transporter family (DUF4137) DOE58_RS07315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS07315 PF03466 LysR substrate binding domain DOE58_RS07320 PF03502 Nucleoside-specific channel-forming protein, Tsx DOE58_RS07325 PF01048 Phosphorylase superfamily DOE58_RS07330 PF03825 Nucleoside H+ symporter DOE58_RS07340 PF03466 LysR substrate binding domain DOE58_RS07340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS07365 PF00749 tRNA synthetases class I (E and Q), catalytic domain DOE58_RS07370 PF07037 Putative transcription regulator (DUF1323) DOE58_RS07375 PF07037 Putative transcription regulator (DUF1323) DOE58_RS07395 PF05231 MASE1 DOE58_RS07395 PF00563 EAL domain DOE58_RS07400 PF07662 Na+ dependent nucleoside transporter C-terminus DOE58_RS07400 PF07670 Nucleoside recognition DOE58_RS07400 PF01773 Na+ dependent nucleoside transporter N-terminus DOE58_RS07405 PF01566 Natural resistance-associated macrophage protein DOE58_RS07410 PF10697 Protein of unknown function (DUF2502) DOE58_RS07415 PF00248 Aldo/keto reductase family DOE58_RS07420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE58_RS07420 PF00205 Thiamine pyrophosphate enzyme, central domain DOE58_RS07420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE58_RS07425 PF00654 Voltage gated chloride channel DOE58_RS07430 PF02685 Glucokinase DOE58_RS07440 PF00155 Aminotransferase class I and II DOE58_RS07450 PF03279 Bacterial lipid A biosynthesis acyltransferase DOE58_RS07455 PF10810 Protein of unknown function (DUF2545) DOE58_RS07465 PF07690 Major Facilitator Superfamily DOE58_RS07480 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS07480 PF00672 HAMP domain DOE58_RS07480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS07485 PF14532 Sigma-54 interaction domain DOE58_RS07485 PF00072 Response regulator receiver domain DOE58_RS07485 PF02954 Bacterial regulatory protein, Fis family DOE58_RS07490 PF01278 Omptin family DOE58_RS07500 PF01226 Formate/nitrite transporter DOE58_RS07505 PF04333 MlaA lipoprotein DOE58_RS07510 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DOE58_RS07515 PF04175 Protein of unknown function (DUF406) DOE58_RS07520 PF02803 Thiolase, C-terminal domain DOE58_RS07520 PF00108 Thiolase, N-terminal domain DOE58_RS07525 PF00378 Enoyl-CoA hydratase/isomerase DOE58_RS07525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DOE58_RS07525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DOE58_RS07530 PF00300 Histidine phosphatase superfamily (branch 1) DOE58_RS07535 PF01713 Smr domain DOE58_RS07540 PF05175 Methyltransferase small domain DOE58_RS07545 PF01264 Chorismate synthase DOE58_RS07550 PF03411 Penicillin-insensitive murein endopeptidase DOE58_RS07555 PF01925 Sulfite exporter TauE/SafE DOE58_RS07560 PF04315 Elongation factor P hydroxylase DOE58_RS07565 PF08891 YfcL protein DOE58_RS07570 PF01266 FAD dependent oxidoreductase DOE58_RS07570 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DOE58_RS07575 PF02801 Beta-ketoacyl synthase, C-terminal domain DOE58_RS07575 PF00109 Beta-ketoacyl synthase, N-terminal domain DOE58_RS07580 PF02517 CPBP intramembrane metalloprotease DOE58_RS07595 PF13693 Winged helix-turn-helix DNA-binding DOE58_RS07605 PF07690 Major Facilitator Superfamily DOE58_RS07615 PF11890 Domain of unknown function (DUF3410) DOE58_RS07615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE58_RS07615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOE58_RS07620 PF02774 Semialdehyde dehydrogenase, dimerisation domain DOE58_RS07620 PF01118 Semialdehyde dehydrogenase, NAD binding domain DOE58_RS07625 PF01416 tRNA pseudouridine synthase DOE58_RS07630 PF09335 SNARE associated Golgi protein DOE58_RS07635 PF17848 Acetyl-coA carboxylase zinc finger domain DOE58_RS07635 PF01039 Carboxyl transferase domain DOE58_RS07640 PF08245 Mur ligase middle domain DOE58_RS07640 PF02875 Mur ligase family, glutamate ligase domain DOE58_RS07645 PF05036 Sporulation related domain DOE58_RS07650 PF02674 Colicin V production protein DOE58_RS07655 PF00156 Phosphoribosyl transferase domain DOE58_RS07660 PF02954 Bacterial regulatory protein, Fis family DOE58_RS07660 PF13426 PAS domain DOE58_RS07660 PF00158 Sigma-54 interaction domain DOE58_RS07665 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DOE58_RS07665 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DOE58_RS07670 PF13520 Amino acid permease DOE58_RS07675 PF01168 Alanine racemase, N-terminal domain DOE58_RS07680 PF00324 Amino acid permease DOE58_RS07685 PF02441 Flavoprotein DOE58_RS07695 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE58_RS07700 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE58_RS07705 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS07710 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS07715 PF00005 ABC transporter DOE58_RS07720 PF01370 NAD dependent epimerase/dehydratase family DOE58_RS07720 PF08338 Domain of unknown function (DUF1731) DOE58_RS07725 PF00043 Glutathione S-transferase, C-terminal domain DOE58_RS07725 PF02798 Glutathione S-transferase, N-terminal domain DOE58_RS07730 PF02798 Glutathione S-transferase, N-terminal domain DOE58_RS07730 PF14834 Glutathione S-transferase, C-terminal domain DOE58_RS07735 PF12850 Calcineurin-like phosphoesterase superfamily domain DOE58_RS07740 PF00293 NUDIX domain DOE58_RS07745 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS07755 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE58_RS07765 PF03611 PTS system sugar-specific permease component DOE58_RS07770 PF00456 Transketolase, thiamine diphosphate binding domain DOE58_RS07775 PF02779 Transketolase, pyrimidine binding domain DOE58_RS07775 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DOE58_RS07775 PF02780 Transketolase, C-terminal domain DOE58_RS07780 PF03606 C4-dicarboxylate anaerobic carrier DOE58_RS07785 PF01515 Phosphate acetyl/butaryl transferase DOE58_RS07785 PF07085 DRTGG domain DOE58_RS07790 PF00871 Acetokinase family DOE58_RS07795 PF04217 Protein of unknown function, DUF412 DOE58_RS07800 PF03887 YfbU domain DOE58_RS07805 PF13419 Haloacid dehalogenase-like hydrolase DOE58_RS07810 PF03600 Citrate transporter DOE58_RS07810 PF02080 TrkA-C domain DOE58_RS07820 PF00155 Aminotransferase class I and II DOE58_RS07830 PF03466 LysR substrate binding domain DOE58_RS07830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS07840 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DOE58_RS07845 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOE58_RS07850 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DOE58_RS07850 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DOE58_RS07860 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DOE58_RS07860 PF10531 SLBB domain DOE58_RS07860 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DOE58_RS07865 PF01568 Molydopterin dinucleotide binding domain DOE58_RS07865 PF00384 Molybdopterin oxidoreductase DOE58_RS07865 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS07865 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DOE58_RS07870 PF00146 NADH dehydrogenase DOE58_RS07875 PF12838 4Fe-4S dicluster domain DOE58_RS07880 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DOE58_RS07885 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DOE58_RS07890 PF00361 Proton-conducting membrane transporter DOE58_RS07890 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DOE58_RS07895 PF00361 Proton-conducting membrane transporter DOE58_RS07900 PF00361 Proton-conducting membrane transporter DOE58_RS07905 PF01584 CheW-like domain DOE58_RS07905 PF00072 Response regulator receiver domain DOE58_RS07910 PF12706 Beta-lactamase superfamily domain DOE58_RS07915 PF13673 Acetyltransferase (GNAT) domain DOE58_RS07920 PF05957 Bacterial protein of unknown function (DUF883) DOE58_RS07925 PF00425 chorismate binding enzyme DOE58_RS07930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE58_RS07930 PF16582 Middle domain of thiamine pyrophosphate DOE58_RS07930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE58_RS07935 PF12697 Alpha/beta hydrolase family DOE58_RS07940 PF00378 Enoyl-CoA hydratase/isomerase DOE58_RS07945 PF13378 Enolase C-terminal domain-like DOE58_RS07950 PF13193 AMP-binding enzyme C-terminal domain DOE58_RS07950 PF00501 AMP-binding enzyme DOE58_RS07965 PF00892 EamA-like transporter family DOE58_RS07970 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase DOE58_RS07975 PF01522 Polysaccharide deacetylase DOE58_RS07980 PF00551 Formyl transferase DOE58_RS07980 PF01370 NAD dependent epimerase/dehydratase family DOE58_RS07980 PF02911 Formyl transferase, C-terminal domain DOE58_RS07985 PF00535 Glycosyl transferase family 2 DOE58_RS07990 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DOE58_RS07995 PF00300 Histidine phosphatase superfamily (branch 1) DOE58_RS08000 PF00293 NUDIX domain DOE58_RS08005 PF07437 YfaZ precursor DOE58_RS08010 PF00994 Probable molybdopterin binding domain DOE58_RS08030 PF02754 Cysteine-rich domain DOE58_RS08030 PF13183 4Fe-4S dicluster domain DOE58_RS08035 PF00890 FAD binding domain DOE58_RS08040 PF01266 FAD dependent oxidoreductase DOE58_RS08040 PF04324 BFD-like [2Fe-2S] binding domain DOE58_RS08045 PF07690 Major Facilitator Superfamily DOE58_RS08050 PF03009 Glycerophosphoryl diester phosphodiesterase family DOE58_RS08055 PF03466 LysR substrate binding domain DOE58_RS08055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS08060 PF07690 Major Facilitator Superfamily DOE58_RS08065 PF00111 2Fe-2S iron-sulfur cluster binding domain DOE58_RS08070 PF00268 Ribonucleotide reductase, small chain DOE58_RS08075 PF03477 ATP cone domain DOE58_RS08075 PF00317 Ribonucleotide reductase, all-alpha domain DOE58_RS08075 PF02867 Ribonucleotide reductase, barrel domain DOE58_RS08090 PF07690 Major Facilitator Superfamily DOE58_RS08095 PF13378 Enolase C-terminal domain-like DOE58_RS08095 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOE58_RS08105 PF00521 DNA gyrase/topoisomerase IV, subunit A DOE58_RS08105 PF03989 DNA gyrase C-terminal domain, beta-propeller DOE58_RS08110 PF09456 RcsC Alpha-Beta-Loop (ABL) DOE58_RS08110 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS08110 PF00072 Response regulator receiver domain DOE58_RS08110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS08115 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS08115 PF00072 Response regulator receiver domain DOE58_RS08120 PF16359 RcsD-ABL domain DOE58_RS08120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS08120 PF01627 Hpt domain DOE58_RS08130 PF00267 Gram-negative porin DOE58_RS08135 PF02424 ApbE family DOE58_RS08140 PF12833 Helix-turn-helix domain DOE58_RS08140 PF02805 Metal binding domain of Ada DOE58_RS08140 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DOE58_RS08140 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DOE58_RS08145 PF13532 2OG-Fe(II) oxygenase superfamily DOE58_RS08150 PF00005 ABC transporter DOE58_RS08155 PF03974 Ecotin DOE58_RS08160 PF12800 4Fe-4S binding domain DOE58_RS08160 PF13187 4Fe-4S dicluster domain DOE58_RS08160 PF00037 4Fe-4S binding domain DOE58_RS08165 PF03927 NapD protein DOE58_RS08170 PF00384 Molybdopterin oxidoreductase DOE58_RS08170 PF01568 Molydopterin dinucleotide binding domain DOE58_RS08170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS08175 PF12800 4Fe-4S binding domain DOE58_RS08175 PF12838 4Fe-4S dicluster domain DOE58_RS08180 PF13237 4Fe-4S dicluster domain DOE58_RS08180 PF12801 4Fe-4S binding domain DOE58_RS08185 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) DOE58_RS08190 PF03264 NapC/NirT cytochrome c family, N-terminal region DOE58_RS08195 PF00005 ABC transporter DOE58_RS08200 PF03379 CcmB protein DOE58_RS08205 PF01578 Cytochrome C assembly protein DOE58_RS08210 PF04995 Heme exporter protein D (CcmD) DOE58_RS08215 PF03100 CcmE DOE58_RS08220 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DOE58_RS08220 PF01578 Cytochrome C assembly protein DOE58_RS08225 PF08534 Redoxin DOE58_RS08230 PF03918 Cytochrome C biogenesis protein DOE58_RS08235 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS08235 PF00072 Response regulator receiver domain DOE58_RS08280 PF00884 Sulfatase DOE58_RS08280 PF11893 Domain of unknown function (DUF3413) DOE58_RS08285 PF07208 Protein of unknown function (DUF1414) DOE58_RS08290 PF04245 37-kD nucleoid-associated bacterial protein DOE58_RS08295 PF01386 Ribosomal L25p family DOE58_RS08300 PF04851 Type III restriction enzyme, res subunit DOE58_RS08300 PF00271 Helicase conserved C-terminal domain DOE58_RS08305 PF01479 S4 domain DOE58_RS08305 PF00849 RNA pseudouridylate synthase DOE58_RS08310 PF07690 Major Facilitator Superfamily DOE58_RS08320 PF13989 YejG-like protein DOE58_RS08325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE58_RS08325 PF00005 ABC transporter DOE58_RS08330 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE58_RS08330 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS08335 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS08340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE58_RS08345 PF00563 EAL domain DOE58_RS08345 PF12792 CSS motif domain associated with EAL DOE58_RS08355 PF00877 NlpC/P60 family DOE58_RS08365 PF01569 PAP2 superfamily DOE58_RS08370 PF07683 Cobalamin synthesis protein cobW C-terminal domain DOE58_RS08370 PF02492 CobW/HypB/UreG, nucleotide-binding domain DOE58_RS08375 PF09285 Elongation factor P, C-terminal DOE58_RS08375 PF08207 Elongation factor P (EF-P) KOW-like domain DOE58_RS08375 PF01132 Elongation factor P (EF-P) OB domain DOE58_RS08385 PF03692 Putative zinc- or iron-chelating domain DOE58_RS08400 PF07690 Major Facilitator Superfamily DOE58_RS08410 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE58_RS08410 PF00381 PTS HPr component phosphorylation site DOE58_RS08415 PF00294 pfkB family carbohydrate kinase DOE58_RS08420 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE58_RS08420 PF02378 Phosphotransferase system, EIIC DOE58_RS08425 PF01261 Xylose isomerase-like TIM barrel DOE58_RS08430 PF03601 Conserved hypothetical protein 698 DOE58_RS08435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS08435 PF03466 LysR substrate binding domain DOE58_RS08440 PF00324 Amino acid permease DOE58_RS08450 PF00593 TonB dependent receptor DOE58_RS08450 PF07715 TonB-dependent Receptor Plug Domain DOE58_RS08455 PF07690 Major Facilitator Superfamily DOE58_RS08460 PF18429 Domain of unknown function (DUF5609) DOE58_RS08465 PF03315 Serine dehydratase beta chain DOE58_RS08465 PF03313 Serine dehydratase alpha chain DOE58_RS08475 PF00756 Putative esterase DOE58_RS08485 PF01227 GTP cyclohydrolase I DOE58_RS08490 PF04235 Protein of unknown function (DUF418) DOE58_RS08495 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS08500 PF13407 Periplasmic binding protein domain DOE58_RS08505 PF00005 ABC transporter DOE58_RS08510 PF02653 Branched-chain amino acid transport system / permease component DOE58_RS08515 PF01180 Dihydroorotate dehydrogenase DOE58_RS08520 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DOE58_RS08520 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS08525 PF10808 Protein of unknown function (DUF2542) DOE58_RS08530 PF02698 DUF218 domain DOE58_RS08535 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region DOE58_RS08535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DOE58_RS08540 PF04172 LrgB-like family DOE58_RS08545 PF03788 LrgA family DOE58_RS08550 PF03466 LysR substrate binding domain DOE58_RS08550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS08555 PF07690 Major Facilitator Superfamily DOE58_RS08560 PF07883 Cupin domain DOE58_RS08565 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOE58_RS08570 PF02798 Glutathione S-transferase, N-terminal domain DOE58_RS08570 PF14497 Glutathione S-transferase, C-terminal domain DOE58_RS08575 PF01494 FAD binding domain DOE58_RS08580 PF01207 Dihydrouridine synthase (Dus) DOE58_RS08590 PF02321 Outer membrane efflux protein DOE58_RS08600 PF09335 SNARE associated Golgi protein DOE58_RS08605 PF04893 Yip1 domain DOE58_RS08615 PF00768 D-alanyl-D-alanine carboxypeptidase DOE58_RS08620 PF01565 FAD binding domain DOE58_RS08620 PF09330 D-lactate dehydrogenase, membrane binding DOE58_RS08625 PF01915 Glycosyl hydrolase family 3 C-terminal domain DOE58_RS08625 PF14310 Fibronectin type III-like domain DOE58_RS08625 PF00933 Glycosyl hydrolase family 3 N terminal domain DOE58_RS08630 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DOE58_RS08635 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS08640 PF00005 ABC transporter DOE58_RS08645 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS08655 PF13411 MerR HTH family regulatory protein DOE58_RS08660 PF06580 Histidine kinase DOE58_RS08660 PF07694 5TMR of 5TMR-LYT DOE58_RS08665 PF00072 Response regulator receiver domain DOE58_RS08665 PF04397 LytTr DNA-binding domain DOE58_RS08670 PF07308 Protein of unknown function (DUF1456) DOE58_RS08680 PF06998 Protein of unknown function (DUF1307) DOE58_RS08685 PF09334 tRNA synthetases class I (M) DOE58_RS08685 PF01588 Putative tRNA binding domain DOE58_RS08690 PF10609 NUBPL iron-transfer P-loop NTPase DOE58_RS08705 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE58_RS08705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS08710 PF13954 PapC N-terminal domain DOE58_RS08710 PF00577 Outer membrane usher protein DOE58_RS08710 PF13953 PapC C-terminal domain DOE58_RS08715 PF00419 Fimbrial protein DOE58_RS08720 PF11776 Nickel/cobalt transporter regulator DOE58_RS08725 PF02110 Hydroxyethylthiazole kinase family DOE58_RS08730 PF08543 Phosphomethylpyrimidine kinase DOE58_RS08735 PF07702 UTRA domain DOE58_RS08735 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS08740 PF00294 pfkB family carbohydrate kinase DOE58_RS08745 PF03747 ADP-ribosylglycohydrolase DOE58_RS08750 PF03825 Nucleoside H+ symporter DOE58_RS08755 PF01791 DeoC/LacD family aldolase DOE58_RS08760 PF00781 Diacylglycerol kinase catalytic domain DOE58_RS08770 PF05932 Tir chaperone protein (CesT) family DOE58_RS08780 PF01136 Peptidase family U32 DOE58_RS08780 PF16325 Peptidase family U32 C-terminal domain DOE58_RS08805 PF00072 Response regulator receiver domain DOE58_RS08805 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS08810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS08810 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS08810 PF00672 HAMP domain DOE58_RS08815 PF07690 Major Facilitator Superfamily DOE58_RS08820 PF00873 AcrB/AcrD/AcrF family DOE58_RS08825 PF00873 AcrB/AcrD/AcrF family DOE58_RS08830 PF13533 Biotin-lipoyl like DOE58_RS08840 PF00012 Hsp70 protein DOE58_RS08850 PF06029 AlkA N-terminal domain DOE58_RS08850 PF00730 HhH-GPD superfamily base excision DNA repair protein DOE58_RS08855 PF08447 PAS fold DOE58_RS08855 PF05231 MASE1 DOE58_RS08855 PF00563 EAL domain DOE58_RS08855 PF00990 Diguanylate cyclase, GGDEF domain DOE58_RS08855 PF08448 PAS fold DOE58_RS08855 PF13426 PAS domain DOE58_RS08860 PF00485 Phosphoribulokinase / Uridine kinase family DOE58_RS08865 PF00692 dUTPase DOE58_RS08870 PF05170 AsmA family DOE58_RS08875 PF00571 CBS domain DOE58_RS08875 PF03741 Integral membrane protein TerC family DOE58_RS08875 PF03471 Transporter associated domain DOE58_RS08885 PF02563 Polysaccharide biosynthesis/export protein DOE58_RS08885 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DOE58_RS08885 PF10531 SLBB domain DOE58_RS08890 PF01451 Low molecular weight phosphotyrosine protein phosphatase DOE58_RS08895 PF02706 Chain length determinant protein DOE58_RS08895 PF13614 AAA domain DOE58_RS08895 PF13807 G-rich domain on putative tyrosine kinase DOE58_RS08900 PF00535 Glycosyl transferase family 2 DOE58_RS08905 PF00132 Bacterial transferase hexapeptide (six repeats) DOE58_RS08910 PF13439 Glycosyltransferase Family 4 DOE58_RS08910 PF00534 Glycosyl transferases group 1 DOE58_RS08920 PF00535 Glycosyl transferase family 2 DOE58_RS08925 PF00132 Bacterial transferase hexapeptide (six repeats) DOE58_RS08930 PF16363 GDP-mannose 4,6 dehydratase DOE58_RS08935 PF01370 NAD dependent epimerase/dehydratase family DOE58_RS08940 PF00293 NUDIX domain DOE58_RS08945 PF00534 Glycosyl transferases group 1 DOE58_RS08945 PF13579 Glycosyl transferase 4-like domain DOE58_RS08950 PF00483 Nucleotidyl transferase DOE58_RS08950 PF01050 Mannose-6-phosphate isomerase DOE58_RS08955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOE58_RS08955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOE58_RS08955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOE58_RS08955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOE58_RS08960 PF02397 Bacterial sugar transferase DOE58_RS08970 PF04230 Polysaccharide pyruvyl transferase DOE58_RS08975 PF13439 Glycosyltransferase Family 4 DOE58_RS08975 PF00534 Glycosyl transferases group 1 DOE58_RS08985 PF00483 Nucleotidyl transferase DOE58_RS08990 PF16363 GDP-mannose 4,6 dehydratase DOE58_RS08995 PF04321 RmlD substrate binding domain DOE58_RS09000 PF00483 Nucleotidyl transferase DOE58_RS09005 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DOE58_RS09010 PF00970 Oxidoreductase FAD-binding domain DOE58_RS09010 PF00111 2Fe-2S iron-sulfur cluster binding domain DOE58_RS09010 PF00175 Oxidoreductase NAD-binding domain DOE58_RS09015 PF00483 Nucleotidyl transferase DOE58_RS09020 PF16363 GDP-mannose 4,6 dehydratase DOE58_RS09025 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DOE58_RS09030 PF01370 NAD dependent epimerase/dehydratase family DOE58_RS09040 PF00535 Glycosyl transferase family 2 DOE58_RS09045 PF00534 Glycosyl transferases group 1 DOE58_RS09045 PF13439 Glycosyltransferase Family 4 DOE58_RS09050 PF00535 Glycosyl transferase family 2 DOE58_RS09055 PF00483 Nucleotidyl transferase DOE58_RS09055 PF01050 Mannose-6-phosphate isomerase DOE58_RS09060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOE58_RS09060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOE58_RS09060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOE58_RS09060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOE58_RS09065 PF02397 Bacterial sugar transferase DOE58_RS09070 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DOE58_RS09070 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOE58_RS09080 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOE58_RS09080 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOE58_RS09085 PF02706 Chain length determinant protein DOE58_RS09090 PF01502 Phosphoribosyl-AMP cyclohydrolase DOE58_RS09090 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DOE58_RS09095 PF00977 Histidine biosynthesis protein DOE58_RS09100 PF00977 Histidine biosynthesis protein DOE58_RS09105 PF00117 Glutamine amidotransferase class-I DOE58_RS09110 PF00475 Imidazoleglycerol-phosphate dehydratase DOE58_RS09115 PF00155 Aminotransferase class I and II DOE58_RS09120 PF00815 Histidinol dehydrogenase DOE58_RS09125 PF08029 HisG, C-terminal domain DOE58_RS09125 PF01634 ATP phosphoribosyltransferase DOE58_RS09135 PF01370 NAD dependent epimerase/dehydratase family DOE58_RS09140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS09140 PF03466 LysR substrate binding domain DOE58_RS09150 PF13520 Amino acid permease DOE58_RS09155 PF00929 Exonuclease DOE58_RS09155 PF08411 Exonuclease C-terminal DOE58_RS09160 PF13981 SopA-like central domain DOE58_RS09160 PF13979 SopA-like catalytic domain DOE58_RS09160 PF13599 Pentapeptide repeats (9 copies) DOE58_RS09175 PF00384 Molybdopterin oxidoreductase DOE58_RS09175 PF01568 Molydopterin dinucleotide binding domain DOE58_RS09175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS09180 PF12800 4Fe-4S binding domain DOE58_RS09180 PF13247 4Fe-4S dicluster domain DOE58_RS09185 PF01292 Prokaryotic cytochrome b561 DOE58_RS09190 PF07943 Penicillin-binding protein 5, C-terminal domain DOE58_RS09190 PF00768 D-alanyl-D-alanine carboxypeptidase DOE58_RS09195 PF06445 GyrI-like small molecule binding domain DOE58_RS09200 PF04632 Fusaric acid resistance protein family DOE58_RS09205 PF04363 Protein of unknown function (DUF496) DOE58_RS09210 PF00288 GHMP kinases N terminal domain DOE58_RS09215 PF00871 Acetokinase family DOE58_RS09220 PF10662 Ethanolamine utilisation - propanediol utilisation DOE58_RS09225 PF00936 BMC domain DOE58_RS09235 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DOE58_RS09235 PF13237 4Fe-4S dicluster domain DOE58_RS09235 PF10531 SLBB domain DOE58_RS09235 PF13375 RnfC Barrel sandwich hybrid domain DOE58_RS09240 PF00465 Iron-containing alcohol dehydrogenase DOE58_RS09245 PF00171 Aldehyde dehydrogenase family DOE58_RS09250 PF01923 Cobalamin adenosyltransferase DOE58_RS09255 PF03319 Ethanolamine utilisation protein EutN/carboxysome DOE58_RS09265 PF06130 Phosphate propanoyltransferase DOE58_RS09270 PF00936 BMC domain DOE58_RS09275 PF00936 BMC domain DOE58_RS09285 PF18427 DD-reactivating factor swiveling domain DOE58_RS09285 PF08841 Diol dehydratase reactivase ATPase-like domain DOE58_RS09290 PF02287 Dehydratase small subunit DOE58_RS09295 PF02288 Dehydratase medium subunit DOE58_RS09300 PF02286 Dehydratase large subunit DOE58_RS09305 PF00936 BMC domain DOE58_RS09310 PF00936 BMC domain DOE58_RS09315 PF00230 Major intrinsic protein DOE58_RS09320 PF10114 Sensory domain found in PocR DOE58_RS09320 PF12833 Helix-turn-helix domain DOE58_RS09325 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DOE58_RS09325 PF07685 CobB/CobQ-like glutamine amidotransferase domain DOE58_RS09330 PF03186 CobD/Cbib protein DOE58_RS09335 PF02570 Precorrin-8X methylmutase DOE58_RS09340 PF01888 CbiD DOE58_RS09345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE58_RS09350 PF05175 Methyltransferase small domain DOE58_RS09355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE58_RS09360 PF11761 Cobalamin biosynthesis central region DOE58_RS09360 PF11760 Cobalamin synthesis G N-terminal DOE58_RS09360 PF01890 Cobalamin synthesis G C-terminus DOE58_RS09365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE58_RS09370 PF02571 Precorrin-6x reductase CbiJ/CobK DOE58_RS09375 PF06180 Cobalt chelatase (CbiK) DOE58_RS09380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE58_RS09385 PF01891 Cobalt uptake substrate-specific transmembrane region DOE58_RS09390 PF02553 Cobalt transport protein component CbiN DOE58_RS09395 PF02361 Cobalt transport protein DOE58_RS09400 PF00005 ABC transporter DOE58_RS09405 PF07685 CobB/CobQ-like glutamine amidotransferase domain DOE58_RS09410 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DOE58_RS09415 PF02654 Cobalamin-5-phosphate synthase DOE58_RS09420 PF02277 Phosphoribosyltransferase DOE58_RS09425 PF03734 L,D-transpeptidase catalytic domain DOE58_RS09425 PF17969 L,D-transpeptidase C-terminal domain DOE58_RS09435 PF01554 MatE DOE58_RS09465 PF01048 Phosphorylase superfamily DOE58_RS09465 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus DOE58_RS09490 PF06167 Glucose-regulated metallo-peptidase M90 DOE58_RS09510 PF00717 Peptidase S24-like DOE58_RS09515 PF00817 impB/mucB/samB family DOE58_RS09515 PF11799 impB/mucB/samB family C-terminal domain DOE58_RS09515 PF13438 Domain of unknown function (DUF4113) DOE58_RS09520 PF00313 'Cold-shock' DNA-binding domain DOE58_RS09530 PF00267 Gram-negative porin DOE58_RS09540 PF01966 HD domain DOE58_RS09545 PF00145 C-5 cytosine-specific DNA methylase DOE58_RS09545 PF18284 DNA methylase N-terminal domain DOE58_RS09550 PF03852 DNA mismatch endonuclease Vsr DOE58_RS09555 PF00892 EamA-like transporter family DOE58_RS09560 PF05661 Protein of unknown function (DUF808) DOE58_RS09565 PF09926 Uncharacterized small protein (DUF2158) DOE58_RS09570 PF00990 Diguanylate cyclase, GGDEF domain DOE58_RS09570 PF17151 Periplasmic sensor domain DOE58_RS09580 PF10733 Protein of unknown function (DUF2525) DOE58_RS09585 PF10781 Dextransucrase DSRB DOE58_RS09590 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS09595 PF01311 Bacterial export proteins, family 1 DOE58_RS09600 PF01313 Bacterial export proteins, family 3 DOE58_RS09605 PF00813 FliP family DOE58_RS09610 PF04347 Flagellar biosynthesis protein, FliO DOE58_RS09615 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOE58_RS09615 PF16973 Flagellar motor switch protein FliN N-terminal DOE58_RS09620 PF02154 Flagellar motor switch protein FliM DOE58_RS09620 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOE58_RS09625 PF03748 Flagellar basal body-associated protein FliL DOE58_RS09630 PF02120 Flagellar hook-length control protein FliK DOE58_RS09635 PF02050 Flagellar FliJ protein DOE58_RS09640 PF18269 T3SS EscN ATPase C-terminal domain DOE58_RS09640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE58_RS09645 PF02108 Flagellar assembly protein FliH DOE58_RS09650 PF14842 FliG N-terminal domain DOE58_RS09650 PF01706 FliG C-terminal domain DOE58_RS09650 PF14841 FliG middle domain DOE58_RS09655 PF01514 Secretory protein of YscJ/FliF family DOE58_RS09655 PF08345 Flagellar M-ring protein C-terminal DOE58_RS09660 PF02049 Flagellar hook-basal body complex protein FliE DOE58_RS09670 PF01206 Sulfurtransferase TusA DOE58_RS09675 PF04143 Sulphur transport DOE58_RS09680 PF13987 YedD-like protein DOE58_RS09685 PF02806 Alpha amylase, C-terminal all-beta domain DOE58_RS09685 PF00128 Alpha amylase, catalytic domain DOE58_RS09690 PF05400 Flagellar protein FliT DOE58_RS09695 PF02561 Flagellar protein FliS DOE58_RS09700 PF07196 Flagellin hook IN motif DOE58_RS09700 PF07195 Flagellar hook-associated protein 2 C-terminus DOE58_RS09700 PF02465 Flagellar hook-associated protein 2 N-terminus DOE58_RS09705 PF00669 Bacterial flagellin N-terminal helical region DOE58_RS09705 PF00700 Bacterial flagellin C-terminal helical region DOE58_RS09705 PF08884 Flagellin D3 domain DOE58_RS09715 PF04542 Sigma-70 region 2 DOE58_RS09715 PF04545 Sigma-70, region 4 DOE58_RS09715 PF04539 Sigma-70 region 3 DOE58_RS09720 PF02899 Phage integrase, N-terminal SAM-like domain DOE58_RS09725 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE58_RS09730 PF00291 Pyridoxal-phosphate dependent enzyme DOE58_RS09735 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS09740 PF00005 ABC transporter DOE58_RS09745 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS09745 PF03472 Autoinducer binding domain DOE58_RS09750 PF10769 Protein of unknown function (DUF2594) DOE58_RS09760 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS09760 PF00072 Response regulator receiver domain DOE58_RS09765 PF02151 UvrB/uvrC motif DOE58_RS09765 PF08459 UvrC Helix-hairpin-helix N-terminal DOE58_RS09765 PF01541 GIY-YIG catalytic domain DOE58_RS09770 PF01066 CDP-alcohol phosphatidyltransferase DOE58_RS09805 PF03695 Uncharacterised protein family (UPF0149) DOE58_RS09805 PF02810 SEC-C motif DOE58_RS09810 PF03222 Tryptophan/tyrosine permease family DOE58_RS09815 PF10678 Protein of unknown function (DUF2492) DOE58_RS09840 PF13992 YecR-like lipoprotein DOE58_RS09850 PF00210 Ferritin-like domain DOE58_RS09865 PF02358 Trehalose-phosphatase DOE58_RS09870 PF00982 Glycosyltransferase family 20 DOE58_RS09875 PF00582 Universal stress protein family DOE58_RS09885 PF05247 Flagellar transcriptional activator (FlhD) DOE58_RS09890 PF05280 Flagellar transcriptional activator (FlhC) DOE58_RS09895 PF01618 MotA/TolQ/ExbB proton channel family DOE58_RS09900 PF13677 Membrane MotB of proton-channel complex MotA/MotB DOE58_RS09900 PF00691 OmpA family DOE58_RS09905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS09905 PF01627 Hpt domain DOE58_RS09905 PF09078 CheY binding DOE58_RS09905 PF02895 Signal transducing histidine kinase, homodimeric domain DOE58_RS09905 PF01584 CheW-like domain DOE58_RS09910 PF01584 CheW-like domain DOE58_RS09915 PF02203 Tar ligand binding domain homologue DOE58_RS09915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE58_RS09915 PF00672 HAMP domain DOE58_RS09920 PF01739 CheR methyltransferase, SAM binding domain DOE58_RS09920 PF03705 CheR methyltransferase, all-alpha domain DOE58_RS09925 PF01339 CheB methylesterase DOE58_RS09925 PF00072 Response regulator receiver domain DOE58_RS09930 PF00072 Response regulator receiver domain DOE58_RS09935 PF04344 Chemotaxis phosphatase, CheZ DOE58_RS09940 PF01312 FlhB HrpN YscU SpaS Family DOE58_RS09945 PF00771 FHIPEP family DOE58_RS09950 PF06366 Flagellar protein FlhE DOE58_RS09955 PF07470 Glycosyl Hydrolase Family 88 DOE58_RS09960 PF03717 Penicillin-binding Protein dimerisation domain DOE58_RS09960 PF00905 Penicillin binding protein transpeptidase domain DOE58_RS09965 PF03485 Arginyl tRNA synthetase N terminal domain DOE58_RS09965 PF05746 DALR anticodon binding domain DOE58_RS09965 PF00750 tRNA synthetases class I (R) DOE58_RS09970 PF06185 YecM protein DOE58_RS09975 PF03932 CutC family DOE58_RS09985 PF08003 Protein of unknown function (DUF1698) DOE58_RS09990 PF13649 Methyltransferase domain DOE58_RS09995 PF01124 MAPEG family DOE58_RS10000 PF01904 Protein of unknown function DUF72 DOE58_RS10005 PF00857 Isochorismatase family DOE58_RS10010 PF02938 GAD domain DOE58_RS10010 PF00152 tRNA synthetases class II (D, K and N) DOE58_RS10010 PF01336 OB-fold nucleic acid binding domain DOE58_RS10015 PF00293 NUDIX domain DOE58_RS10020 PF01709 Transcriptional regulator DOE58_RS10025 PF02075 Crossover junction endodeoxyribonuclease RuvC DOE58_RS10030 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family DOE58_RS10040 PF07499 RuvA, C-terminal domain DOE58_RS10040 PF01330 RuvA N terminal domain DOE58_RS10045 PF05496 Holliday junction DNA helicase RuvB P-loop domain DOE58_RS10045 PF17864 RuvB AAA lid domain DOE58_RS10045 PF05491 RuvB C-terminal winged helix domain DOE58_RS10050 PF00950 ABC 3 transport family DOE58_RS10055 PF00005 ABC transporter DOE58_RS10060 PF01297 Zinc-uptake complex component A periplasmic DOE58_RS10065 PF01551 Peptidase family M23 DOE58_RS10065 PF01476 LysM domain DOE58_RS10065 PF08525 Opacity-associated protein A N-terminal motif DOE58_RS10075 PF03279 Bacterial lipid A biosynthesis acyltransferase DOE58_RS10080 PF02887 Pyruvate kinase, alpha/beta domain DOE58_RS10080 PF00224 Pyruvate kinase, barrel domain DOE58_RS10085 PF01380 SIS domain DOE58_RS10085 PF01418 Helix-turn-helix domain, rpiR family DOE58_RS10095 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DOE58_RS10095 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DOE58_RS10100 PF00920 Dehydratase family DOE58_RS10105 PF01081 KDPG and KHG aldolase DOE58_RS10110 PF02222 ATP-grasp domain DOE58_RS10115 PF07130 YebG protein DOE58_RS10120 PF13995 YebF-like protein DOE58_RS10125 PF04391 Protein of unknown function (DUF533) DOE58_RS10130 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DOE58_RS10130 PF00326 Prolyl oligopeptidase family DOE58_RS10135 PF00929 Exonuclease DOE58_RS10140 PF00795 Carbon-nitrogen hydrolase DOE58_RS10145 PF06440 DNA polymerase III, theta subunit DOE58_RS10150 PF04234 CopC domain DOE58_RS10155 PF05425 Copper resistance protein D DOE58_RS10160 PF10709 Protein of unknown function (DUF2511) DOE58_RS10180 PF02413 Caudovirales tail fibre assembly protein, lambda gpK DOE58_RS10245 PF00360 Phytochrome region DOE58_RS10245 PF01590 GAF domain DOE58_RS10245 PF00563 EAL domain DOE58_RS10245 PF00990 Diguanylate cyclase, GGDEF domain DOE58_RS10250 PF14863 Alkyl sulfatase dimerisation DOE58_RS10250 PF00753 Metallo-beta-lactamase superfamily DOE58_RS10250 PF14864 Alkyl sulfatase C-terminal DOE58_RS10275 PF00892 EamA-like transporter family DOE58_RS10305 PF02413 Caudovirales tail fibre assembly protein, lambda gpK DOE58_RS10310 PF00583 Acetyltransferase (GNAT) family DOE58_RS10320 PF07166 Protein of unknown function (DUF1398) DOE58_RS10335 PF00149 Calcineurin-like phosphoesterase DOE58_RS10340 PF07358 Protein of unknown function (DUF1482) DOE58_RS10345 PF07351 Protein of unknown function (DUF1480) DOE58_RS10350 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DOE58_RS10350 PF01189 16S rRNA methyltransferase RsmB/F DOE58_RS10350 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF DOE58_RS10355 PF02470 MlaD protein DOE58_RS10360 PF04403 Paraquat-inducible protein A DOE58_RS10365 PF13185 GAF domain DOE58_RS10370 PF17516 ProQ C-terminal domain DOE58_RS10370 PF04352 ProQ/FINO family DOE58_RS10375 PF11818 C-terminal domain of tail specific protease (DUF3340) DOE58_RS10375 PF17804 Tail specific protease N-terminal domain DOE58_RS10375 PF03572 Peptidase family S41 DOE58_RS10375 PF00595 PDZ domain DOE58_RS10380 PF01435 Peptidase family M48 DOE58_RS10385 PF07690 Major Facilitator Superfamily DOE58_RS10390 PF09339 IclR helix-turn-helix domain DOE58_RS10390 PF01614 Bacterial transcriptional regulator DOE58_RS10395 PF13996 YobH-like protein DOE58_RS10400 PF13998 MgrB protein DOE58_RS10405 PF13974 YebO-like protein DOE58_RS10410 PF10736 Protein of unknown function (DUF2627) DOE58_RS10415 PF00313 'Cold-shock' DNA-binding domain DOE58_RS10420 PF00905 Penicillin binding protein transpeptidase domain DOE58_RS10420 PF03717 Penicillin-binding Protein dimerisation domain DOE58_RS10425 PF13847 Methyltransferase domain DOE58_RS10430 PF02659 Putative manganese efflux pump DOE58_RS10440 PF06173 Protein of unknown function (DUF986) DOE58_RS10445 PF03613 PTS system mannose/fructose/sorbose family IID component DOE58_RS10450 PF03609 PTS system sorbose-specific iic component DOE58_RS10455 PF03830 PTS system sorbose subfamily IIB component DOE58_RS10455 PF03610 PTS system fructose IIA component DOE58_RS10465 PF03741 Integral membrane protein TerC family DOE58_RS10465 PF03471 Transporter associated domain DOE58_RS10470 PF00563 EAL domain DOE58_RS10470 PF12792 CSS motif domain associated with EAL DOE58_RS10475 PF03313 Serine dehydratase alpha chain DOE58_RS10475 PF03315 Serine dehydratase beta chain DOE58_RS10480 PF00293 NUDIX domain DOE58_RS10485 PF04715 Anthranilate synthase component I, N terminal region DOE58_RS10485 PF00425 chorismate binding enzyme DOE58_RS10490 PF03701 Uncharacterised protein family (UPF0181) DOE58_RS10495 PF01042 Endoribonuclease L-PSP DOE58_RS10500 PF13307 Helicase C-terminal domain DOE58_RS10500 PF04851 Type III restriction enzyme, res subunit DOE58_RS10505 PF00814 Glycoprotease family DOE58_RS10510 PF03843 Outer membrane lipoprotein Slp family DOE58_RS10520 PF13193 AMP-binding enzyme C-terminal domain DOE58_RS10520 PF00501 AMP-binding enzyme DOE58_RS10525 PF01612 3'-5' exonuclease DOE58_RS10525 PF00570 HRDC domain DOE58_RS10530 PF03776 Septum formation topological specificity factor MinE DOE58_RS10535 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DOE58_RS10540 PF03775 Septum formation inhibitor MinC, C-terminal domain DOE58_RS10540 PF05209 Septum formation inhibitor MinC, N-terminal domain DOE58_RS10545 PF05166 YcgL domain DOE58_RS10550 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOE58_RS10555 PF03692 Putative zinc- or iron-chelating domain DOE58_RS10565 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system DOE58_RS10575 PF02600 Disulfide bond formation protein DsbB DOE58_RS10580 PF06450 Bacterial Na+/H+ antiporter B (NhaB) DOE58_RS10585 PF07840 FadR C-terminal domain DOE58_RS10585 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS10590 PF04293 SpoVR like protein DOE58_RS10595 PF01266 FAD dependent oxidoreductase DOE58_RS10600 PF01168 Alanine racemase, N-terminal domain DOE58_RS10600 PF00842 Alanine racemase, C-terminal domain DOE58_RS10605 PF00999 Sodium/hydrogen exchanger family DOE58_RS10605 PF02080 TrkA-C domain DOE58_RS10605 PF03471 Transporter associated domain DOE58_RS10610 PF02016 LD-carboxypeptidase N-terminal domain DOE58_RS10610 PF17676 LD-carboxypeptidase C-terminal domain DOE58_RS10615 PF01464 Transglycosylase SLT domain DOE58_RS10620 PF07317 Flagellar regulator YcgR DOE58_RS10620 PF07238 PilZ domain DOE58_RS10625 PF04226 Transglycosylase associated protein DOE58_RS10630 PF01204 Trehalase DOE58_RS10635 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DOE58_RS10635 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOE58_RS10640 PF08173 Membrane bound YbgT-like protein DOE58_RS10645 PF02322 Cytochrome bd terminal oxidase subunit II DOE58_RS10650 PF01654 Cytochrome bd terminal oxidase subunit I DOE58_RS10655 PF04809 HupH hydrogenase expression protein, C-terminal conserved region DOE58_RS10660 PF07449 Hydrogenase-1 expression protein HyaE DOE58_RS10665 PF01750 Hydrogenase maturation protease DOE58_RS10670 PF01292 Prokaryotic cytochrome b561 DOE58_RS10675 PF00374 Nickel-dependent hydrogenase DOE58_RS10680 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DOE58_RS10680 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOE58_RS10690 PF06071 Protein of unknown function (DUF933) DOE58_RS10690 PF01926 50S ribosome-binding GTPase DOE58_RS10695 PF01195 Peptidyl-tRNA hydrolase DOE58_RS10700 PF10762 Protein of unknown function (DUF2583) DOE58_RS10705 PF00916 Sulfate permease family DOE58_RS10705 PF01740 STAS domain DOE58_RS10710 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DOE58_RS10710 PF14572 Phosphoribosyl synthetase-associated domain DOE58_RS10715 PF00288 GHMP kinases N terminal domain DOE58_RS10715 PF08544 GHMP kinases C terminal DOE58_RS10720 PF03550 Outer membrane lipoprotein LolB DOE58_RS10725 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DOE58_RS10725 PF01488 Shikimate / quinate 5-dehydrogenase DOE58_RS10725 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DOE58_RS10730 PF00472 RF-1 domain DOE58_RS10730 PF03462 PCRF domain DOE58_RS10735 PF17827 PrmC N-terminal domain DOE58_RS10735 PF13847 Methyltransferase domain DOE58_RS10740 PF04247 Invasion gene expression up-regulator, SirB DOE58_RS10745 PF13369 Transglutaminase-like superfamily DOE58_RS10750 PF00793 DAHP synthetase I family DOE58_RS10755 PF01699 Sodium/calcium exchanger protein DOE58_RS10760 PF06150 ChaB DOE58_RS10765 PF02635 DsrE/DsrF-like family DOE58_RS10770 PF11924 Inverse autotransporter, beta-domain DOE58_RS10775 PF00072 Response regulator receiver domain DOE58_RS10775 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS10780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS10780 PF07730 Histidine kinase DOE58_RS10780 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DOE58_RS10780 PF00672 HAMP domain DOE58_RS10790 PF07690 Major Facilitator Superfamily DOE58_RS10795 PF14710 Respiratory nitrate reductase alpha N-terminal DOE58_RS10795 PF01568 Molydopterin dinucleotide binding domain DOE58_RS10795 PF00384 Molybdopterin oxidoreductase DOE58_RS10800 PF13247 4Fe-4S dicluster domain DOE58_RS10800 PF14711 Respiratory nitrate reductase beta C-terminal DOE58_RS10805 PF02613 Nitrate reductase delta subunit DOE58_RS10810 PF02665 Nitrate reductase gamma subunit DOE58_RS10835 PF00551 Formyl transferase DOE58_RS10835 PF01842 ACT domain DOE58_RS10840 PF02810 SEC-C motif DOE58_RS10845 PF01734 Patatin-like phospholipase DOE58_RS10850 PF00072 Response regulator receiver domain DOE58_RS10855 PF00483 Nucleotidyl transferase DOE58_RS10860 PF00816 H-NS histone family DOE58_RS10865 PF00265 Thymidine kinase DOE58_RS10870 PF00465 Iron-containing alcohol dehydrogenase DOE58_RS10870 PF00171 Aldehyde dehydrogenase family DOE58_RS10875 PF01914 MarC family integral membrane protein DOE58_RS10885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE58_RS10890 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS10895 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS10895 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE58_RS10900 PF00005 ABC transporter DOE58_RS10900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE58_RS10905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE58_RS10905 PF00005 ABC transporter DOE58_RS10910 PF00027 Cyclic nucleotide-binding domain DOE58_RS10910 PF00520 Ion transport protein DOE58_RS10915 PF04269 Protein of unknown function, DUF440 DOE58_RS10920 PF13396 Phospholipase_D-nuclease N-terminal DOE58_RS10920 PF13091 PLD-like domain DOE58_RS10925 PF03795 YCII-related domain DOE58_RS10930 PF03544 Gram-negative bacterial TonB protein C-terminal DOE58_RS10935 PF03061 Thioesterase superfamily DOE58_RS10940 PF04279 Intracellular septation protein A DOE58_RS10950 PF03692 Putative zinc- or iron-chelating domain DOE58_RS10955 PF03922 OmpW family DOE58_RS10960 PF05067 Manganese containing catalase DOE58_RS10965 PF05974 Domain of unknown function (DUF892) DOE58_RS10970 PF05974 Domain of unknown function (DUF892) DOE58_RS10975 PF10685 Stress-induced bacterial acidophilic repeat motif DOE58_RS10980 PF00290 Tryptophan synthase alpha chain DOE58_RS10985 PF00291 Pyridoxal-phosphate dependent enzyme DOE58_RS10990 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DOE58_RS10990 PF00218 Indole-3-glycerol phosphate synthase DOE58_RS10995 PF00117 Glutamine amidotransferase class-I DOE58_RS10995 PF02885 Glycosyl transferase family, helical bundle domain DOE58_RS10995 PF00591 Glycosyl transferase family, a/b domain DOE58_RS11000 PF04715 Anthranilate synthase component I, N terminal region DOE58_RS11000 PF00425 chorismate binding enzyme DOE58_RS11005 PF08255 Trp-operon Leader Peptide DOE58_RS11010 PF02811 PHP domain DOE58_RS11015 PF01300 Telomere recombination DOE58_RS11020 PF01479 S4 domain DOE58_RS11020 PF00849 RNA pseudouridylate synthase DOE58_RS11025 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DOE58_RS11030 PF00106 short chain dehydrogenase DOE58_RS11035 PF08496 Peptidase family S49 N-terminal DOE58_RS11035 PF01343 Peptidase family S49 DOE58_RS11040 PF10692 Protein of unknown function (DUF2498) DOE58_RS11050 PF01396 Topoisomerase DNA binding C4 zinc finger DOE58_RS11050 PF01131 DNA topoisomerase DOE58_RS11050 PF08272 Topoisomerase I zinc-ribbon-like DOE58_RS11050 PF01751 Toprim domain DOE58_RS11060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS11060 PF03466 LysR substrate binding domain DOE58_RS11080 PF00694 Aconitase C-terminal domain DOE58_RS11080 PF00330 Aconitase family (aconitate hydratase) DOE58_RS11085 PF00925 GTP cyclohydrolase II DOE58_RS11090 PF01569 PAP2 superfamily DOE58_RS11100 PF06305 Lipopolysaccharide assembly protein A domain DOE58_RS11105 PF18073 Rubredoxin metal binding domain DOE58_RS11110 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DOE58_RS11115 PF01253 Translation initiation factor SUI1 DOE58_RS11120 PF05433 Glycine zipper 2TM domain DOE58_RS11125 PF00455 DeoR C terminal sensor domain DOE58_RS11125 PF08220 DeoR-like helix-turn-helix domain DOE58_RS11135 PF13426 PAS domain DOE58_RS11135 PF00990 Diguanylate cyclase, GGDEF domain DOE58_RS11135 PF00563 EAL domain DOE58_RS11145 PF08206 Ribonuclease B OB domain DOE58_RS11145 PF17876 Cold shock domain DOE58_RS11145 PF00575 S1 RNA binding domain DOE58_RS11145 PF00773 RNB domain DOE58_RS11180 PF00005 ABC transporter DOE58_RS11185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE58_RS11185 PF00005 ABC transporter DOE58_RS11190 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS11190 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE58_RS11230 PF02796 Helix-turn-helix domain of resolvase DOE58_RS11230 PF00239 Resolvase, N terminal domain DOE58_RS11235 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS11240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE58_RS11245 PF02954 Bacterial regulatory protein, Fis family DOE58_RS11245 PF00158 Sigma-54 interaction domain DOE58_RS11250 PF04012 PspA/IM30 family DOE58_RS11255 PF06667 Phage shock protein B DOE58_RS11260 PF04024 PspC domain DOE58_RS11265 PF09584 Phage shock protein PspD (Phageshock_PspD) DOE58_RS11270 PF00581 Rhodanese-like domain DOE58_RS11275 PF04317 YcjX-like family, DUF463 DOE58_RS11280 PF05128 Domain of unknown function (DUF697) DOE58_RS11285 PF18024 Helix-turn-helix domain DOE58_RS11285 PF00158 Sigma-54 interaction domain DOE58_RS11290 PF08534 Redoxin DOE58_RS11295 PF13378 Enolase C-terminal domain-like DOE58_RS11295 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOE58_RS11300 PF00246 Zinc carboxypeptidase DOE58_RS11305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE58_RS11315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS11315 PF03466 LysR substrate binding domain DOE58_RS11320 PF00248 Aldo/keto reductase family DOE58_RS11330 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS11345 PF12833 Helix-turn-helix domain DOE58_RS11345 PF06445 GyrI-like small molecule binding domain DOE58_RS11370 PF08534 Redoxin DOE58_RS11390 PF00924 Mechanosensitive ion channel DOE58_RS11395 PF10749 Protein of unknown function (DUF2534) DOE58_RS11400 PF00582 Universal stress protein family DOE58_RS11405 PF13545 Crp-like helix-turn-helix domain DOE58_RS11405 PF00027 Cyclic nucleotide-binding domain DOE58_RS11410 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DOE58_RS11410 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DOE58_RS11415 PF01713 Smr domain DOE58_RS11425 PF02203 Tar ligand binding domain homologue DOE58_RS11425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE58_RS11425 PF00672 HAMP domain DOE58_RS11430 PF01544 CorA-like Mg2+ transporter protein DOE58_RS11440 PF00270 DEAD/DEAH box helicase DOE58_RS11440 PF00271 Helicase conserved C-terminal domain DOE58_RS11440 PF03880 DbpA RNA binding domain DOE58_RS11445 PF01171 PP-loop family DOE58_RS11465 PF00893 Small Multidrug Resistance protein DOE58_RS11470 PF00582 Universal stress protein family DOE58_RS11480 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DOE58_RS11480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE58_RS11480 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DOE58_RS11480 PF10371 Domain of unknown function DOE58_RS11480 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DOE58_RS11490 PF03891 Domain of unknown function (DUF333) DOE58_RS11495 PF03724 META domain DOE58_RS11500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE58_RS11500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOE58_RS11505 PF11739 Dicarboxylate transport DOE58_RS11510 PF13617 YnbE-like lipoprotein DOE58_RS11515 PF07027 Protein of unknown function (DUF1318) DOE58_RS11525 PF02525 Flavodoxin-like fold DOE58_RS11530 PF00270 DEAD/DEAH box helicase DOE58_RS11530 PF11898 Domain of unknown function (DUF3418) DOE58_RS11530 PF00271 Helicase conserved C-terminal domain DOE58_RS11530 PF04408 Helicase associated domain (HA2) DOE58_RS11530 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DOE58_RS11535 PF02698 DUF218 domain DOE58_RS11540 PF01292 Prokaryotic cytochrome b561 DOE58_RS11545 PF08242 Methyltransferase domain DOE58_RS11555 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS11560 PF00005 ABC transporter DOE58_RS11565 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS11570 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE58_RS11580 PF00657 GDSL-like Lipase/Acylhydrolase DOE58_RS11580 PF06767 Sif protein DOE58_RS11595 PF02583 Metal-sensitive transcriptional repressor DOE58_RS11600 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS11600 PF00107 Zinc-binding dehydrogenase DOE58_RS11610 PF02203 Tar ligand binding domain homologue DOE58_RS11610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE58_RS11610 PF00672 HAMP domain DOE58_RS11615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS11615 PF03466 LysR substrate binding domain DOE58_RS11620 PF07063 Domain of unknown function (DUF1338) DOE58_RS11625 PF00135 Carboxylesterase family DOE58_RS11630 PF04349 Periplasmic glucan biosynthesis protein, MdoG DOE58_RS11635 PF04264 YceI-like domain DOE58_RS11640 PF01070 FMN-dependent dehydrogenase DOE58_RS11645 PF00583 Acetyltransferase (GNAT) family DOE58_RS11650 PF00455 DeoR C terminal sensor domain DOE58_RS11650 PF08220 DeoR-like helix-turn-helix domain DOE58_RS11655 PF00834 Ribulose-phosphate 3 epimerase family DOE58_RS11660 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE58_RS11665 PF03437 BtpA family DOE58_RS11670 PF03611 PTS system sugar-specific permease component DOE58_RS11675 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE58_RS11680 PF05343 M42 glutamyl aminopeptidase DOE58_RS11685 PF13302 Acetyltransferase (GNAT) domain DOE58_RS11690 PF18836 Beta solenoid repeat from YDCK DOE58_RS11695 PF03595 Voltage-dependent anion channel DOE58_RS11700 PF03848 Tellurite resistance protein TehB DOE58_RS11705 PF11769 Protein of unknown function (DUF3313) DOE58_RS11710 PF03594 Benzoate membrane transport protein DOE58_RS11715 PF07883 Cupin domain DOE58_RS11715 PF01381 Helix-turn-helix DOE58_RS11720 PF01136 Peptidase family U32 DOE58_RS11720 PF12392 Collagenase DOE58_RS11725 PF10829 Protein of unknown function (DUF2554) DOE58_RS11730 PF06767 Sif protein DOE58_RS11745 PF01427 D-ala-D-ala dipeptidase DOE58_RS11750 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS11750 PF00155 Aminotransferase class I and II DOE58_RS11755 PF00171 Aldehyde dehydrogenase family DOE58_RS11765 PF10753 Toxin GhoT_OrtT DOE58_RS11785 PF10735 Protein of unknown function (DUF2526) DOE58_RS11790 PF04657 Putative inner membrane exporter, YdcZ DOE58_RS11800 PF16884 N-terminal domain of oxidoreductase DOE58_RS11800 PF00107 Zinc-binding dehydrogenase DOE58_RS11805 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS11805 PF07729 FCD domain DOE58_RS11810 PF00593 TonB dependent receptor DOE58_RS11810 PF07715 TonB-dependent Receptor Plug Domain DOE58_RS11820 PF06004 Bacterial protein of unknown function (DUF903) DOE58_RS11825 PF00324 Amino acid permease DOE58_RS11835 PF00797 N-acetyltransferase DOE58_RS11840 PF02567 Phenazine biosynthesis-like protein DOE58_RS11845 PF02665 Nitrate reductase gamma subunit DOE58_RS11850 PF02613 Nitrate reductase delta subunit DOE58_RS11855 PF13247 4Fe-4S dicluster domain DOE58_RS11855 PF14711 Respiratory nitrate reductase beta C-terminal DOE58_RS11860 PF14710 Respiratory nitrate reductase alpha N-terminal DOE58_RS11860 PF00384 Molybdopterin oxidoreductase DOE58_RS11860 PF01568 Molydopterin dinucleotide binding domain DOE58_RS11865 PF07690 Major Facilitator Superfamily DOE58_RS11870 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS11875 PF07690 Major Facilitator Superfamily DOE58_RS11885 PF00267 Gram-negative porin DOE58_RS11895 PF00892 EamA-like transporter family DOE58_RS11900 PF01568 Molydopterin dinucleotide binding domain DOE58_RS11900 PF00384 Molybdopterin oxidoreductase DOE58_RS11900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS11905 PF01568 Molydopterin dinucleotide binding domain DOE58_RS11905 PF00384 Molybdopterin oxidoreductase DOE58_RS11905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS11910 PF13247 4Fe-4S dicluster domain DOE58_RS11910 PF12800 4Fe-4S binding domain DOE58_RS11910 PF09163 Formate dehydrogenase N, transmembrane DOE58_RS11915 PF01292 Prokaryotic cytochrome b561 DOE58_RS11920 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS11920 PF00107 Zinc-binding dehydrogenase DOE58_RS11925 PF00390 Malic enzyme, N-terminal domain DOE58_RS11925 PF03949 Malic enzyme, NAD binding domain DOE58_RS11930 PF08136 30S ribosomal protein subunit S22 family DOE58_RS11935 PF10684 Putative biofilm-dependent modulation protein DOE58_RS11940 PF02566 OsmC-like protein DOE58_RS11945 PF06109 Haemolysin E (HlyE) DOE58_RS11960 PF06411 HdeA/HdeB family DOE58_RS11970 PF00128 Alpha amylase, catalytic domain DOE58_RS11970 PF11941 Domain of unknown function (DUF3459) DOE58_RS11970 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOE58_RS11975 PF00128 Alpha amylase, catalytic domain DOE58_RS11980 PF00128 Alpha amylase, catalytic domain DOE58_RS11980 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOE58_RS11985 PF00155 Aminotransferase class I and II DOE58_RS11990 PF03553 Na+/H+ antiporter family DOE58_RS11995 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS12000 PF03060 Nitronate monooxygenase DOE58_RS12005 PF03466 LysR substrate binding domain DOE58_RS12005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS12040 PF01042 Endoribonuclease L-PSP DOE58_RS12045 PF02547 Queuosine biosynthesis protein DOE58_RS12055 PF01494 FAD binding domain DOE58_RS12060 PF07690 Major Facilitator Superfamily DOE58_RS12070 PF07690 Major Facilitator Superfamily DOE58_RS12075 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS12075 PF00107 Zinc-binding dehydrogenase DOE58_RS12080 PF07729 FCD domain DOE58_RS12080 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS12090 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOE58_RS12090 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DOE58_RS12095 PF00374 Nickel-dependent hydrogenase DOE58_RS12100 PF01292 Prokaryotic cytochrome b561 DOE58_RS12105 PF01750 Hydrogenase maturation protease DOE58_RS12110 PF01455 HupF/HypC family DOE58_RS12120 PF04809 HupH hydrogenase expression protein, C-terminal conserved region DOE58_RS12130 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DOE58_RS12135 PF00267 Gram-negative porin DOE58_RS12145 PF01062 Bestrophin, RFP-TM, chloride channel DOE58_RS12150 PF13811 Domain of unknown function (DUF4186) DOE58_RS12155 PF04960 Glutaminase DOE58_RS12160 PF00171 Aldehyde dehydrogenase family DOE58_RS12165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS12165 PF03466 LysR substrate binding domain DOE58_RS12175 PF07690 Major Facilitator Superfamily DOE58_RS12180 PF01914 MarC family integral membrane protein DOE58_RS12185 PF01047 MarR family DOE58_RS12190 PF12833 Helix-turn-helix domain DOE58_RS12195 PF13999 MarB protein DOE58_RS12200 PF00892 EamA-like transporter family DOE58_RS12205 PF07690 Major Facilitator Superfamily DOE58_RS12220 PF04076 Bacterial OB fold (BOF) protein DOE58_RS12225 PF02464 Competence-damaged protein DOE58_RS12230 PF10685 Stress-induced bacterial acidophilic repeat motif DOE58_RS12240 PF01432 Peptidase family M3 DOE58_RS12245 PF00106 short chain dehydrogenase DOE58_RS12250 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS12250 PF07729 FCD domain DOE58_RS12255 PF14001 YdfZ protein DOE58_RS12260 PF08125 Mannitol dehydrogenase C-terminal domain DOE58_RS12260 PF01232 Mannitol dehydrogenase Rossmann domain DOE58_RS12265 PF00083 Sugar (and other) transporter DOE58_RS12265 PF07690 Major Facilitator Superfamily DOE58_RS12270 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS12270 PF00107 Zinc-binding dehydrogenase DOE58_RS12275 PF13378 Enolase C-terminal domain-like DOE58_RS12275 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOE58_RS12280 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DOE58_RS12285 PF06932 Protein of unknown function (DUF1283) DOE58_RS12290 PF13302 Acetyltransferase (GNAT) domain DOE58_RS12295 PF06788 Uncharacterised protein family (UPF0257) DOE58_RS12300 PF06649 Protein of unknown function (DUF1161) DOE58_RS12305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS12305 PF00384 Molybdopterin oxidoreductase DOE58_RS12305 PF01568 Molydopterin dinucleotide binding domain DOE58_RS12310 PF01568 Molydopterin dinucleotide binding domain DOE58_RS12310 PF00384 Molybdopterin oxidoreductase DOE58_RS12310 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS12315 PF13247 4Fe-4S dicluster domain DOE58_RS12315 PF12800 4Fe-4S binding domain DOE58_RS12320 PF04976 DMSO reductase anchor subunit (DmsC) DOE58_RS12325 PF02613 Nitrate reductase delta subunit DOE58_RS12330 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS12335 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DOE58_RS12340 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS12345 PF00005 ABC transporter DOE58_RS12345 PF00571 CBS domain DOE58_RS12350 PF00654 Voltage gated chloride channel DOE58_RS12360 PF00480 ROK family DOE58_RS12370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS12370 PF03466 LysR substrate binding domain DOE58_RS12375 PF07690 Major Facilitator Superfamily DOE58_RS12385 PF00089 Trypsin DOE58_RS12390 PF00893 Small Multidrug Resistance protein DOE58_RS12395 PF00893 Small Multidrug Resistance protein DOE58_RS12405 PF01594 AI-2E family transporter DOE58_RS12410 PF02233 NAD(P) transhydrogenase beta subunit DOE58_RS12415 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DOE58_RS12415 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DOE58_RS12415 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DOE58_RS12420 PF07338 Protein of unknown function (DUF1471) DOE58_RS12425 PF13520 Amino acid permease DOE58_RS12430 PF06942 GlpM protein DOE58_RS12435 PF00072 Response regulator receiver domain DOE58_RS12435 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS12450 PF00267 Gram-negative porin DOE58_RS12455 PF13382 Adenine deaminase C-terminal domain DOE58_RS12455 PF01979 Amidohydrolase family DOE58_RS12460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS12460 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS12460 PF00672 HAMP domain DOE58_RS12465 PF05472 DNA replication terminus site-binding protein (Ter protein) DOE58_RS12470 PF10415 Fumarase C C-terminus DOE58_RS12470 PF00206 Lyase DOE58_RS12475 PF05681 Fumarate hydratase (Fumerase) DOE58_RS12475 PF05683 Fumarase C-terminus DOE58_RS12480 PF01238 Phosphomannose isomerase type I DOE58_RS12485 PF06097 Bacterial protein of unknown function (DUF945) DOE58_RS12490 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS12490 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DOE58_RS12495 PF02378 Phosphotransferase system, EIIC DOE58_RS12495 PF00367 phosphotransferase system, EIIB DOE58_RS12500 PF00155 Aminotransferase class I and II DOE58_RS12505 PF00962 Adenosine/AMP deaminase DOE58_RS12510 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE58_RS12510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE58_RS12520 PF05321 Haemolysin expression modulating protein DOE58_RS12525 PF10754 Protein of unknown function (DUF2569) DOE58_RS12530 PF02508 Rnf-Nqr subunit, membrane protein DOE58_RS12535 PF04060 Putative Fe-S cluster DOE58_RS12540 PF12838 4Fe-4S dicluster domain DOE58_RS12540 PF13375 RnfC Barrel sandwich hybrid domain DOE58_RS12540 PF10531 SLBB domain DOE58_RS12540 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DOE58_RS12545 PF03116 NQR2, RnfD, RnfE family DOE58_RS12550 PF04205 FMN-binding domain DOE58_RS12555 PF02508 Rnf-Nqr subunit, membrane protein DOE58_RS12560 PF00633 Helix-hairpin-helix motif DOE58_RS12560 PF00730 HhH-GPD superfamily base excision DNA repair protein DOE58_RS12560 PF10576 Iron-sulfur binding domain of endonuclease III DOE58_RS12565 PF00854 POT family DOE58_RS12570 PF02798 Glutathione S-transferase, N-terminal domain DOE58_RS12570 PF00043 Glutathione S-transferase, C-terminal domain DOE58_RS12575 PF08543 Phosphomethylpyrimidine kinase DOE58_RS12580 PF01479 S4 domain DOE58_RS12580 PF00579 tRNA synthetases class I (W and Y) DOE58_RS12585 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DOE58_RS12585 PF01243 Pyridoxamine 5'-phosphate oxidase DOE58_RS12590 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme DOE58_RS12595 PF03702 Anhydro-N-acetylmuramic acid kinase DOE58_RS12600 PF05433 Glycine zipper 2TM domain DOE58_RS12605 PF01047 MarR family DOE58_RS12610 PF07869 Protein of unknown function (DUF1656) DOE58_RS12615 PF00529 HlyD membrane-fusion protein of T1SS DOE58_RS12615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE58_RS12620 PF04632 Fusaric acid resistance protein family DOE58_RS12625 PF00080 Copper/zinc superoxide dismutase (SODC) DOE58_RS12630 PF00248 Aldo/keto reductase family DOE58_RS12635 PF06945 Protein of unknown function (DUF1289) DOE58_RS12640 PF16925 Tetracyclin repressor-like, C-terminal domain DOE58_RS12640 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS12645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DOE58_RS12650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE58_RS12655 PF00929 Exonuclease DOE58_RS12660 PF00462 Glutaredoxin DOE58_RS12665 PF00877 NlpC/P60 family DOE58_RS12670 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DOE58_RS12670 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DOE58_RS12685 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS12690 PF03466 LysR substrate binding domain DOE58_RS12690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS12695 PF07690 Major Facilitator Superfamily DOE58_RS12705 PF00677 Lumazine binding domain DOE58_RS12710 PF01554 MatE DOE58_RS12725 PF01312 FlhB HrpN YscU SpaS Family DOE58_RS12730 PF01311 Bacterial export proteins, family 1 DOE58_RS12735 PF01313 Bacterial export proteins, family 3 DOE58_RS12740 PF00813 FliP family DOE58_RS12745 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOE58_RS12760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE58_RS12760 PF18269 T3SS EscN ATPase C-terminal domain DOE58_RS12765 PF00771 FHIPEP family DOE58_RS12775 PF07201 HrpJ-like domain DOE58_RS12790 PF01514 Secretory protein of YscJ/FliF family DOE58_RS12830 PF05802 Enterobacterial EspB protein DOE58_RS12835 PF04888 Secretion system effector C (SseC) like family DOE58_RS12845 PF03433 EspA-like secreted protein DOE58_RS12865 PF03958 Bacterial type II/III secretion system short domain DOE58_RS12865 PF00263 Bacterial type II and III secretion system protein DOE58_RS12875 PF01627 Hpt domain DOE58_RS12875 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DOE58_RS12875 PF00672 HAMP domain DOE58_RS12875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS12875 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS12875 PF00072 Response regulator receiver domain DOE58_RS12880 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS12880 PF00072 Response regulator receiver domain DOE58_RS12885 PF13411 MerR HTH family regulatory protein DOE58_RS12890 PF08349 Protein of unknown function (DUF1722) DOE58_RS12895 PF10965 Protein of unknown function (DUF2767) DOE58_RS12900 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS12900 PF00072 Response regulator receiver domain DOE58_RS12905 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS12905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS12910 PF13247 4Fe-4S dicluster domain DOE58_RS12915 PF03916 Polysulphide reductase, NrfD DOE58_RS12920 PF00384 Molybdopterin oxidoreductase DOE58_RS12920 PF01568 Molydopterin dinucleotide binding domain DOE58_RS12920 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS12925 PF00294 pfkB family carbohydrate kinase DOE58_RS12935 PF00561 alpha/beta hydrolase fold DOE58_RS12940 PF00324 Amino acid permease DOE58_RS12950 PF00224 Pyruvate kinase, barrel domain DOE58_RS12950 PF02887 Pyruvate kinase, alpha/beta domain DOE58_RS12955 PF04728 Lipoprotein leucine-zipper DOE58_RS12960 PF03734 L,D-transpeptidase catalytic domain DOE58_RS12960 PF01476 LysM domain DOE58_RS12960 PF17969 L,D-transpeptidase C-terminal domain DOE58_RS12965 PF02657 Fe-S metabolism associated domain DOE58_RS12970 PF00266 Aminotransferase class-V DOE58_RS12975 PF01458 Uncharacterized protein family (UPF0051) DOE58_RS12980 PF00005 ABC transporter DOE58_RS12985 PF01458 Uncharacterized protein family (UPF0051) DOE58_RS12990 PF01521 Iron-sulphur cluster biosynthesis DOE58_RS12995 PF00375 Sodium:dicarboxylate symporter family DOE58_RS13000 PF15930 Domain of unknown function DOE58_RS13005 PF03061 Thioesterase superfamily DOE58_RS13010 PF01565 FAD binding domain DOE58_RS13010 PF13183 4Fe-4S dicluster domain DOE58_RS13010 PF02913 FAD linked oxidases, C-terminal domain DOE58_RS13015 PF01594 AI-2E family transporter DOE58_RS13025 PF08965 Domain of unknown function (DUF1870) DOE58_RS13030 PF07690 Major Facilitator Superfamily DOE58_RS13035 PF07690 Major Facilitator Superfamily DOE58_RS13040 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DOE58_RS13040 PF08501 Shikimate dehydrogenase substrate binding domain DOE58_RS13045 PF01487 Type I 3-dehydroquinase DOE58_RS13050 PF01144 Coenzyme A transferase DOE58_RS13055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOE58_RS13055 PF02770 Acyl-CoA dehydrogenase, middle domain DOE58_RS13055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE58_RS13060 PF12833 Helix-turn-helix domain DOE58_RS13060 PF02311 AraC-like ligand binding domain DOE58_RS13065 PF01012 Electron transfer flavoprotein domain DOE58_RS13070 PF01012 Electron transfer flavoprotein domain DOE58_RS13070 PF00766 Electron transfer flavoprotein FAD-binding domain DOE58_RS13075 PF01494 FAD binding domain DOE58_RS13085 PF00501 AMP-binding enzyme DOE58_RS13085 PF13193 AMP-binding enzyme C-terminal domain DOE58_RS13090 PF00391 PEP-utilising enzyme, mobile domain DOE58_RS13090 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DOE58_RS13090 PF02896 PEP-utilising enzyme, TIM barrel domain DOE58_RS13095 PF03618 Kinase/pyrophosphorylase DOE58_RS13100 PF00793 DAHP synthetase I family DOE58_RS13105 PF10636 Hemin uptake protein hemP DOE58_RS13110 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DOE58_RS13130 PF00877 NlpC/P60 family DOE58_RS13135 PF00005 ABC transporter DOE58_RS13140 PF00255 Glutathione peroxidase DOE58_RS13145 PF01032 FecCD transport family DOE58_RS13150 PF00216 Bacterial DNA-binding protein DOE58_RS13155 PF03483 B3/4 domain DOE58_RS13155 PF03484 tRNA synthetase B5 domain DOE58_RS13155 PF03147 Ferredoxin-fold anticodon binding domain DOE58_RS13155 PF01588 Putative tRNA binding domain DOE58_RS13155 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DOE58_RS13160 PF01409 tRNA synthetases class II core domain (F) DOE58_RS13160 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DOE58_RS13170 PF00453 Ribosomal protein L20 DOE58_RS13175 PF01632 Ribosomal protein L35 DOE58_RS13180 PF05198 Translation initiation factor IF-3, N-terminal domain DOE58_RS13180 PF00707 Translation initiation factor IF-3, C-terminal domain DOE58_RS13185 PF02824 TGS domain DOE58_RS13185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOE58_RS13185 PF03129 Anticodon binding domain DOE58_RS13185 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DOE58_RS13205 PF01223 DNA/RNA non-specific endonuclease DOE58_RS13220 PF04338 Protein of unknown function, DUF481 DOE58_RS13225 PF00294 pfkB family carbohydrate kinase DOE58_RS13230 PF11080 Endoribonuclease GhoS DOE58_RS13235 PF03881 Fructosamine kinase DOE58_RS13240 PF14002 YniB-like protein DOE58_RS13245 PF13419 Haloacid dehalogenase-like hydrolase DOE58_RS13250 PF04307 LexA-binding, inner membrane-associated putative hydrolase DOE58_RS13255 PF00375 Sodium:dicarboxylate symporter family DOE58_RS13260 PF10729 Cell division activator CedA DOE58_RS13265 PF18011 C-terminal domain found in long catalases DOE58_RS13265 PF00199 Catalase DOE58_RS13265 PF06628 Catalase-related immune-responsive DOE58_RS13270 PF04794 YdjC-like protein DOE58_RS13275 PF02056 Family 4 glycosyl hydrolase DOE58_RS13275 PF11975 Family 4 glycosyl hydrolase C-terminal domain DOE58_RS13280 PF07883 Cupin domain DOE58_RS13280 PF12833 Helix-turn-helix domain DOE58_RS13285 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DOE58_RS13290 PF02378 Phosphotransferase system, EIIC DOE58_RS13295 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE58_RS13305 PF04355 SmpA / OmlA family DOE58_RS13310 PF02540 NAD synthase DOE58_RS13320 PF07813 LTXXQ motif family protein DOE58_RS13330 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DOE58_RS13335 PF04996 Succinylarginine dihydrolase DOE58_RS13340 PF00171 Aldehyde dehydrogenase family DOE58_RS13345 PF04958 Arginine N-succinyltransferase beta subunit DOE58_RS13350 PF00202 Aminotransferase class-III DOE58_RS13360 PF03372 Endonuclease/Exonuclease/phosphatase family DOE58_RS13365 PF00293 NUDIX domain DOE58_RS13370 PF07383 Protein of unknown function (DUF1496) DOE58_RS13375 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DOE58_RS13375 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOE58_RS13380 PF01131 DNA topoisomerase DOE58_RS13380 PF01751 Toprim domain DOE58_RS13385 PF00586 AIR synthase related protein, N-terminal domain DOE58_RS13385 PF02769 AIR synthase related protein, C-terminal domain DOE58_RS13390 PF00881 Nitroreductase family DOE58_RS13395 PF01343 Peptidase family S49 DOE58_RS13400 PF17763 Glutaminase/Asparaginase C-terminal domain DOE58_RS13400 PF00710 Asparaginase, N-terminal DOE58_RS13405 PF00857 Isochorismatase family DOE58_RS13410 PF00083 Sugar (and other) transporter DOE58_RS13415 PF00455 DeoR C terminal sensor domain DOE58_RS13415 PF08220 DeoR-like helix-turn-helix domain DOE58_RS13420 PF00248 Aldo/keto reductase family DOE58_RS13425 PF00294 pfkB family carbohydrate kinase DOE58_RS13430 PF01116 Fructose-bisphosphate aldolase class-II DOE58_RS13435 PF00107 Zinc-binding dehydrogenase DOE58_RS13435 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS13440 PF00083 Sugar (and other) transporter DOE58_RS13445 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS13445 PF00107 Zinc-binding dehydrogenase DOE58_RS13455 PF07023 Protein of unknown function (DUF1315) DOE58_RS13460 PF01641 SelR domain DOE58_RS13465 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DOE58_RS13465 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DOE58_RS13475 PF01263 Aldose 1-epimerase DOE58_RS13480 PF00248 Aldo/keto reductase family DOE58_RS13485 PF13186 Iron-sulfur cluster-binding domain DOE58_RS13485 PF04055 Radical SAM superfamily DOE58_RS13490 PF06629 MltA-interacting protein MipA DOE58_RS13495 PF08298 PrkA AAA domain DOE58_RS13495 PF06798 PrkA serine protein kinase C-terminal domain DOE58_RS13500 PF04285 Protein of unknown function (DUF444) DOE58_RS13505 PF00990 Diguanylate cyclase, GGDEF domain DOE58_RS13505 PF17155 Gammaproteobacterial periplasmic sensor domain DOE58_RS13510 PF04073 Aminoacyl-tRNA editing domain DOE58_RS13520 PF04284 Protein of unknown function (DUF441) DOE58_RS13525 PF12833 Helix-turn-helix domain DOE58_RS13525 PF02311 AraC-like ligand binding domain DOE58_RS13530 PF07690 Major Facilitator Superfamily DOE58_RS13535 PF04343 Protein of unknown function, DUF488 DOE58_RS13545 PF03891 Domain of unknown function (DUF333) DOE58_RS13555 PF04226 Transglycosylase associated protein DOE58_RS13570 PF08956 Domain of unknown function (DUF1869) DOE58_RS13575 PF09313 Domain of unknown function (DUF1971) DOE58_RS13585 PF01810 LysE type translocator DOE58_RS13590 PF01817 Chorismate mutase type II DOE58_RS13605 PF00376 MerR family regulatory protein DOE58_RS13605 PF09278 MerR, DNA binding DOE58_RS13615 PF01909 Nucleotidyltransferase domain DOE58_RS13615 PF13427 Domain of unknown function (DUF4111) DOE58_RS13620 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DOE58_RS13635 PF00924 Mechanosensitive ion channel DOE58_RS13640 PF00005 ABC transporter DOE58_RS13645 PF00005 ABC transporter DOE58_RS13650 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE58_RS13650 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS13655 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS13660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE58_RS13670 PF01292 Prokaryotic cytochrome b561 DOE58_RS13685 PF00011 Hsp20/alpha crystallin family DOE58_RS13710 PF06316 Enterobacterial Ail/Lom protein DOE58_RS13730 PF00313 'Cold-shock' DNA-binding domain DOE58_RS13735 PF00652 Ricin-type beta-trefoil lectin domain DOE58_RS13740 PF06183 DinI-like family DOE58_RS13745 PF03372 Endonuclease/Exonuclease/phosphatase family DOE58_RS13775 PF00180 Isocitrate/isopropylmalate dehydrogenase DOE58_RS13780 PF02586 SOS response associated peptidase (SRAP) DOE58_RS13790 PF14496 C-terminal novel E3 ligase, LRR-interacting DOE58_RS13790 PF12468 Type III secretion system leucine rich repeat protein DOE58_RS13800 PF02040 Arsenical pump membrane protein DOE58_RS13815 PF02413 Caudovirales tail fibre assembly protein, lambda gpK DOE58_RS13820 PF08400 Prophage tail fibre N-terminal DOE58_RS13820 PF03335 Phage tail fibre repeat DOE58_RS13820 PF07484 Phage Tail Collar Domain DOE58_RS13880 PF07282 Putative transposase DNA-binding domain DOE58_RS13880 PF01385 Probable transposase DOE58_RS13880 PF12323 Helix-turn-helix domain DOE58_RS13900 PF03864 Phage major capsid protein E DOE58_RS13910 PF01343 Peptidase family S49 DOE58_RS13920 PF02831 gpW DOE58_RS13925 PF02413 Caudovirales tail fibre assembly protein, lambda gpK DOE58_RS13930 PF07471 Phage DNA packaging protein Nu1 DOE58_RS13940 PF04151 Bacterial pre-peptidase C-terminal domain DOE58_RS13945 PF03245 Bacteriophage Rz lysis protein DOE58_RS13950 PF00959 Phage lysozyme DOE58_RS14025 PF01695 IstB-like ATP binding protein DOE58_RS14050 PF07151 Protein of unknown function (DUF1391) DOE58_RS14065 PF12684 PDDEXK-like domain of unknown function (DUF3799) DOE58_RS14065 PF06630 Enterobacterial exodeoxyribonuclease VIII DOE58_RS14095 PF00589 Phage integrase family DOE58_RS14095 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain DOE58_RS14100 PF00180 Isocitrate/isopropylmalate dehydrogenase DOE58_RS14105 PF00849 RNA pseudouridylate synthase DOE58_RS14115 PF00293 NUDIX domain DOE58_RS14125 PF04356 Protein of unknown function (DUF489) DOE58_RS14130 PF00206 Lyase DOE58_RS14130 PF08328 Adenylosuccinate lyase C-terminal DOE58_RS14135 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS14135 PF00072 Response regulator receiver domain DOE58_RS14140 PF08918 PhoQ Sensor DOE58_RS14140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS14145 PF08007 Cupin superfamily protein DOE58_RS14155 PF07687 Peptidase dimerisation domain DOE58_RS14155 PF01546 Peptidase family M20/M25/M40 DOE58_RS14160 PF00005 ABC transporter DOE58_RS14160 PF08402 TOBE domain DOE58_RS14165 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS14170 PF06767 Sif protein DOE58_RS14175 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS14180 PF13416 Bacterial extracellular solute-binding protein DOE58_RS14185 PF02146 Sir2 family DOE58_RS14190 PF00480 ROK family DOE58_RS14195 PF02687 FtsX-like permease family DOE58_RS14195 PF12704 MacB-like periplasmic core domain DOE58_RS14200 PF00005 ABC transporter DOE58_RS14205 PF02687 FtsX-like permease family DOE58_RS14205 PF12704 MacB-like periplasmic core domain DOE58_RS14210 PF03461 TRCF domain DOE58_RS14210 PF17757 UvrB interaction domain DOE58_RS14210 PF00271 Helicase conserved C-terminal domain DOE58_RS14210 PF02559 CarD-like/TRCF domain DOE58_RS14210 PF00270 DEAD/DEAH box helicase DOE58_RS14215 PF17969 L,D-transpeptidase C-terminal domain DOE58_RS14215 PF01476 LysM domain DOE58_RS14215 PF03734 L,D-transpeptidase catalytic domain DOE58_RS14220 PF07338 Protein of unknown function (DUF1471) DOE58_RS14225 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS14230 PF05433 Glycine zipper 2TM domain DOE58_RS14235 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS14240 PF05728 Uncharacterised protein family (UPF0227) DOE58_RS14245 PF00933 Glycosyl hydrolase family 3 N terminal domain DOE58_RS14250 PF01636 Phosphotransferase enzyme family DOE58_RS14255 PF13036 Peptidoglycan-synthase activator LpoB DOE58_RS14260 PF07233 Protein of unknown function (DUF1425) DOE58_RS14265 PF01230 HIT domain DOE58_RS14270 PF07715 TonB-dependent Receptor Plug Domain DOE58_RS14270 PF00593 TonB dependent receptor DOE58_RS14275 PF02378 Phosphotransferase system, EIIC DOE58_RS14275 PF00367 phosphotransferase system, EIIB DOE58_RS14280 PF01026 TatD related DNase DOE58_RS14285 PF09115 DNA polymerase III, delta subunit, C terminal DOE58_RS14290 PF02223 Thymidylate kinase DOE58_RS14295 PF02618 YceG-like family DOE58_RS14300 PF01063 Amino-transferase class IV DOE58_RS14305 PF00419 Fimbrial protein DOE58_RS14310 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE58_RS14310 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS14315 PF13954 PapC N-terminal domain DOE58_RS14315 PF13953 PapC C-terminal domain DOE58_RS14315 PF00577 Outer membrane usher protein DOE58_RS14335 PF02801 Beta-ketoacyl synthase, C-terminal domain DOE58_RS14335 PF00109 Beta-ketoacyl synthase, N-terminal domain DOE58_RS14340 PF00550 Phosphopantetheine attachment site DOE58_RS14350 PF00698 Acyl transferase domain DOE58_RS14355 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DOE58_RS14355 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DOE58_RS14360 PF02504 Fatty acid synthesis protein DOE58_RS14365 PF01783 Ribosomal L32p protein family DOE58_RS14370 PF02620 Large ribosomal RNA subunit accumulation protein YceD DOE58_RS14375 PF02545 Maf-like protein DOE58_RS14380 PF00849 RNA pseudouridylate synthase DOE58_RS14380 PF01479 S4 domain DOE58_RS14390 PF10150 Ribonuclease E/G family DOE58_RS14390 PF00575 S1 RNA binding domain DOE58_RS14390 PF12111 Polyribonucleotide phosphorylase C terminal DOE58_RS14395 PF00669 Bacterial flagellin N-terminal helical region DOE58_RS14400 PF00460 Flagella basal body rod protein DOE58_RS14400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE58_RS14405 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DOE58_RS14405 PF10135 Rod binding protein DOE58_RS14410 PF02119 Flagellar P-ring protein DOE58_RS14415 PF02107 Flagellar L-ring protein DOE58_RS14420 PF00460 Flagella basal body rod protein DOE58_RS14420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE58_RS14425 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE58_RS14425 PF00460 Flagella basal body rod protein DOE58_RS14430 PF07559 Flagellar basal body protein FlaE DOE58_RS14430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE58_RS14430 PF00460 Flagella basal body rod protein DOE58_RS14435 PF03963 Flagellar hook capping protein - N-terminal region DOE58_RS14435 PF13861 FlgD Tudor-like domain DOE58_RS14435 PF13860 FlgD Ig-like domain DOE58_RS14440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE58_RS14440 PF00460 Flagella basal body rod protein DOE58_RS14445 PF00460 Flagella basal body rod protein DOE58_RS14455 PF13144 Chaperone for flagella basal body P-ring formation DOE58_RS14460 PF04316 Anti-sigma-28 factor, FlgM DOE58_RS14465 PF05130 FlgN protein DOE58_RS14470 PF03023 Lipid II flippase MurJ DOE58_RS14475 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE58_RS14480 PF04337 Protein of unknown function, DUF480 DOE58_RS14485 PF13302 Acetyltransferase (GNAT) domain DOE58_RS14490 PF07690 Major Facilitator Superfamily DOE58_RS14495 PF13417 Glutathione S-transferase, N-terminal domain DOE58_RS14495 PF04399 Glutaredoxin 2, C terminal domain DOE58_RS14500 PF07273 Protein of unknown function (DUF1439) DOE58_RS14505 PF01979 Amidohydrolase family DOE58_RS14510 PF06183 DinI-like family DOE58_RS14515 PF13991 BssS protein family DOE58_RS14520 PF01266 FAD dependent oxidoreductase DOE58_RS14525 PF10968 Protein of unknown function (DUF2770) DOE58_RS14535 PF01292 Prokaryotic cytochrome b561 DOE58_RS14540 PF04264 YceI-like domain DOE58_RS14545 PF17773 UPF0176 acylphosphatase like domain DOE58_RS14545 PF12368 Rhodanase C-terminal DOE58_RS14545 PF00581 Rhodanese-like domain DOE58_RS14550 PF03279 Bacterial lipid A biosynthesis acyltransferase DOE58_RS14560 PF07690 Major Facilitator Superfamily DOE58_RS14565 PF13984 MsyB protein DOE58_RS14570 PF07119 Protein of unknown function (DUF1375) DOE58_RS14575 PF00535 Glycosyl transferase family 2 DOE58_RS14580 PF04349 Periplasmic glucan biosynthesis protein, MdoG DOE58_RS14585 PF01757 Acyltransferase family DOE58_RS14590 PF13091 PLD-like domain DOE58_RS14595 PF01661 Macro domain DOE58_RS14605 PF10610 Thin aggregative fimbriae synthesis protein DOE58_RS14610 PF07012 Curlin associated repeat DOE58_RS14615 PF07012 Curlin associated repeat DOE58_RS14620 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS14625 PF10627 Curli assembly protein CsgE DOE58_RS14630 PF10614 Type VIII secretion system (T8SS), CsgF protein DOE58_RS14635 PF03783 Curli production assembly/transport component CsgG DOE58_RS14640 PF06496 Protein of unknown function (DUF1097) DOE58_RS14645 PF02613 Nitrate reductase delta subunit DOE58_RS14650 PF02811 PHP domain DOE58_RS14655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE58_RS14675 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE58_RS14675 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE58_RS14680 PF07690 Major Facilitator Superfamily DOE58_RS14685 PF06178 Oligogalacturonate-specific porin protein (KdgM) DOE58_RS14690 PF01344 Kelch motif DOE58_RS14695 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DOE58_RS14705 PF00474 Sodium:solute symporter family DOE58_RS14710 PF01418 Helix-turn-helix domain, rpiR family DOE58_RS14710 PF01380 SIS domain DOE58_RS14720 PF00474 Sodium:solute symporter family DOE58_RS14730 PF01619 Proline dehydrogenase DOE58_RS14730 PF14850 DNA-binding domain of Proline dehydrogenase DOE58_RS14730 PF00171 Aldehyde dehydrogenase family DOE58_RS14730 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DOE58_RS14740 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS14740 PF08362 YcdC-like protein, C-terminal region DOE58_RS14745 PF10685 Stress-induced bacterial acidophilic repeat motif DOE58_RS14750 PF03358 NADPH-dependent FMN reductase DOE58_RS14755 PF13993 YccJ-like protein DOE58_RS14760 PF00328 Histidine phosphatase superfamily (branch 2) DOE58_RS14765 PF00578 AhpC/TSA family DOE58_RS14770 PF06965 Na+/H+ antiporter 1 DOE58_RS14770 PF13462 Thioredoxin DOE58_RS14775 PF02683 Cytochrome C biogenesis protein transmembrane region DOE58_RS14775 PF13098 Thioredoxin-like domain DOE58_RS14775 PF11412 Disulphide bond corrector protein DsbC DOE58_RS14790 PF01556 DnaJ C terminal domain DOE58_RS14790 PF00226 DnaJ domain DOE58_RS14810 PF12706 Beta-lactamase superfamily domain DOE58_RS14820 PF07690 Major Facilitator Superfamily DOE58_RS14825 PF03328 HpcH/HpaI aldolase/citrate lyase family DOE58_RS14830 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOE58_RS14840 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase DOE58_RS14845 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DOE58_RS14850 PF00171 Aldehyde dehydrogenase family DOE58_RS14855 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOE58_RS14860 PF01047 MarR family DOE58_RS14865 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal DOE58_RS14865 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal DOE58_RS14870 PF01613 Flavin reductase like domain DOE58_RS14875 PF00576 HIUase/Transthyretin family DOE58_RS14880 PF00072 Response regulator receiver domain DOE58_RS14880 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS14885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS14885 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS14890 PF03577 Peptidase family C69 DOE58_RS14900 PF13132 Domain of unknown function (DUF3950) DOE58_RS14905 PF05925 Enterobacterial virulence protein IpgD DOE58_RS14910 PF07824 Type III secretion chaperone domain DOE58_RS14915 PF00805 Pentapeptide repeats (8 copies) DOE58_RS14930 PF01027 Inhibitor of apoptosis-promoting Bax1 DOE58_RS14935 PF04358 DsrC like protein DOE58_RS14940 PF00708 Acylphosphatase DOE58_RS14945 PF12833 Helix-turn-helix domain DOE58_RS14950 PF01161 Phosphatidylethanolamine-binding protein DOE58_RS14955 PF10672 S-adenosylmethionine-dependent methyltransferase DOE58_RS14955 PF17785 PUA-like domain DOE58_RS14960 PF08755 Hemimethylated DNA-binding protein YccV like DOE58_RS14965 PF13380 CoA binding domain DOE58_RS14970 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DOE58_RS14975 PF02142 MGS-like domain DOE58_RS14980 PF12462 DNA helicase IV / RNA helicase N terminal DOE58_RS14980 PF13361 UvrD-like helicase C-terminal domain DOE58_RS14980 PF00580 UvrD/REP helicase N-terminal domain DOE58_RS14985 PF03733 Inner membrane component domain DOE58_RS14990 PF12805 FUSC-like inner membrane protein yccS DOE58_RS14995 PF04993 TfoX N-terminal domain DOE58_RS14995 PF04994 TfoX C-terminal domain DOE58_RS15000 PF03846 Cell division inhibitor SulA DOE58_RS15005 PF01389 OmpA-like transmembrane domain DOE58_RS15005 PF00691 OmpA family DOE58_RS15010 PF17414 MatP C-terminal ribbon-helix-helix domain DOE58_RS15010 PF06303 MatP N-terminal domain DOE58_RS15015 PF13654 AAA domain DOE58_RS15015 PF05362 Lon protease (S16) C-terminal proteolytic domain DOE58_RS15020 PF07977 FabA-like domain DOE58_RS15025 PF04957 Ribosome modulation factor DOE58_RS15030 PF03886 ABC-type transport auxiliary lipoprotein component DOE58_RS15035 PF02470 MlaD protein DOE58_RS15040 PF04403 Paraquat-inducible protein A DOE58_RS15045 PF00005 ABC transporter DOE58_RS15045 PF16326 ABC transporter C-terminal domain DOE58_RS15045 PF12848 ABC transporter DOE58_RS15050 PF10672 S-adenosylmethionine-dependent methyltransferase DOE58_RS15050 PF02926 THUMP domain DOE58_RS15050 PF01170 Putative RNA methylase family UPF0020 DOE58_RS15055 PF00111 2Fe-2S iron-sulfur cluster binding domain DOE58_RS15055 PF03473 MOSC domain DOE58_RS15055 PF03476 MOSC N-terminal beta barrel domain DOE58_RS15060 PF07126 Cell-division protein ZapC DOE58_RS15065 PF01180 Dihydroorotate dehydrogenase DOE58_RS15070 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DOE58_RS15070 PF01433 Peptidase family M1 domain DOE58_RS15070 PF11940 Domain of unknown function (DUF3458) Ig-like fold DOE58_RS15075 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DOE58_RS15075 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DOE58_RS15080 PF01336 OB-fold nucleic acid binding domain DOE58_RS15080 PF00152 tRNA synthetases class II (D, K and N) DOE58_RS15085 PF00267 Gram-negative porin DOE58_RS15090 PF00155 Aminotransferase class I and II DOE58_RS15095 PF00753 Metallo-beta-lactamase superfamily DOE58_RS15100 PF05951 Bacterial protein of unknown function (DUF882) DOE58_RS15110 PF01471 Putative peptidoglycan binding domain DOE58_RS15110 PF03734 L,D-transpeptidase catalytic domain DOE58_RS15115 PF04310 MukB N-terminal DOE58_RS15115 PF16330 MukB hinge domain DOE58_RS15120 PF04288 MukE-like family DOE58_RS15125 PF17193 MukF C-terminal domain DOE58_RS15125 PF17192 MukF middle domain DOE58_RS15125 PF03882 MukF winged-helix domain DOE58_RS15130 PF13847 Methyltransferase domain DOE58_RS15135 PF02698 DUF218 domain DOE58_RS15140 PF01636 Phosphotransferase enzyme family DOE58_RS15145 PF02348 Cytidylyltransferase DOE58_RS15150 PF03966 Trm112p-like protein DOE58_RS15155 PF06224 Winged helix DNA-binding domain DOE58_RS15160 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DOE58_RS15165 PF00005 ABC transporter DOE58_RS15165 PF00664 ABC transporter transmembrane region DOE58_RS15170 PF03772 Competence protein DOE58_RS15170 PF00753 Metallo-beta-lactamase superfamily DOE58_RS15175 PF00216 Bacterial DNA-binding protein DOE58_RS15180 PF00575 S1 RNA binding domain DOE58_RS15185 PF02224 Cytidylate kinase DOE58_RS15190 PF01435 Peptidase family M48 DOE58_RS15195 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DOE58_RS15200 PF00266 Aminotransferase class-V DOE58_RS15205 PF04239 Protein of unknown function (DUF421) DOE58_RS15210 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding DOE58_RS15210 PF18381 YcaO cyclodehydratase C-terminal domain DOE58_RS15215 PF01226 Formate/nitrite transporter DOE58_RS15220 PF02901 Pyruvate formate lyase-like DOE58_RS15220 PF01228 Glycine radical DOE58_RS15225 PF11047 Salmonella outer protein D DOE58_RS15230 PF04055 Radical SAM superfamily DOE58_RS15235 PF13520 Amino acid permease DOE58_RS15240 PF07690 Major Facilitator Superfamily DOE58_RS15245 PF04976 DMSO reductase anchor subunit (DmsC) DOE58_RS15250 PF13247 4Fe-4S dicluster domain DOE58_RS15250 PF12800 4Fe-4S binding domain DOE58_RS15255 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS15255 PF01568 Molydopterin dinucleotide binding domain DOE58_RS15255 PF00384 Molybdopterin oxidoreductase DOE58_RS15260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOE58_RS15260 PF02403 Seryl-tRNA synthetase N-terminal domain DOE58_RS15265 PF00004 ATPase family associated with various cellular activities (AAA) DOE58_RS15265 PF16193 AAA C-terminal domain DOE58_RS15265 PF12002 MgsA AAA+ ATPase C terminal DOE58_RS15270 PF03548 Outer membrane lipoprotein carrier protein LolA DOE58_RS15275 PF17854 FtsK alpha domain DOE58_RS15275 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DOE58_RS15275 PF09397 Ftsk gamma domain DOE58_RS15275 PF01580 FtsK/SpoIIIE family DOE58_RS15280 PF01037 Lrp/AsnC ligand binding domain DOE58_RS15290 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS15295 PF00005 ABC transporter DOE58_RS15295 PF00664 ABC transporter transmembrane region DOE58_RS15300 PF00664 ABC transporter transmembrane region DOE58_RS15300 PF00005 ABC transporter DOE58_RS15305 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DOE58_RS15315 PF01176 Translation initiation factor 1A / IF-1 DOE58_RS15320 PF03466 LysR substrate binding domain DOE58_RS15320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS15325 PF05726 Pirin C-terminal cupin domain DOE58_RS15325 PF02678 Pirin DOE58_RS15330 PF00857 Isochorismatase family DOE58_RS15340 PF00004 ATPase family associated with various cellular activities (AAA) DOE58_RS15340 PF10431 C-terminal, D2-small domain, of ClpB protein DOE58_RS15340 PF07724 AAA domain (Cdc48 subfamily) DOE58_RS15340 PF17871 AAA lid domain DOE58_RS15340 PF02861 Clp amino terminal domain, pathogenicity island component DOE58_RS15345 PF02617 ATP-dependent Clp protease adaptor protein ClpS DOE58_RS15350 PF00313 'Cold-shock' DNA-binding domain DOE58_RS15355 PF02687 FtsX-like permease family DOE58_RS15355 PF00005 ABC transporter DOE58_RS15355 PF12704 MacB-like periplasmic core domain DOE58_RS15360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE58_RS15365 PF04393 Protein of unknown function (DUF535) DOE58_RS15370 PF11398 Protein of unknown function (DUF2813) DOE58_RS15380 PF03956 Lysine exporter LysO DOE58_RS15385 PF03063 Prismane/CO dehydrogenase family DOE58_RS15390 PF00970 Oxidoreductase FAD-binding domain DOE58_RS15390 PF00111 2Fe-2S iron-sulfur cluster binding domain DOE58_RS15390 PF00175 Oxidoreductase NAD-binding domain DOE58_RS15395 PF00205 Thiamine pyrophosphate enzyme, central domain DOE58_RS15395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE58_RS15395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE58_RS15400 PF01212 Beta-eliminating lyase DOE58_RS15405 PF11066 Protein of unknown function (DUF2867) DOE58_RS15405 PF13460 NAD(P)H-binding DOE58_RS15410 PF01370 NAD dependent epimerase/dehydratase family DOE58_RS15415 PF01510 N-acetylmuramoyl-L-alanine amidase DOE58_RS15420 PF01906 Putative heavy-metal-binding DOE58_RS15425 PF12883 Protein of unknown function (DUF3828) DOE58_RS15430 PF00005 ABC transporter DOE58_RS15435 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE58_RS15440 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS15445 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS15450 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE58_RS15470 PF03611 PTS system sugar-specific permease component DOE58_RS15475 PF05958 tRNA (Uracil-5-)-methyltransferase DOE58_RS15480 PF10767 Protein of unknown function (DUF2593) DOE58_RS15485 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS15490 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS15495 PF00005 ABC transporter DOE58_RS15495 PF08402 TOBE domain DOE58_RS15500 PF13416 Bacterial extracellular solute-binding protein DOE58_RS15505 PF10722 Putative bacterial sensory transduction regulator DOE58_RS15510 PF18030 RimK PreATP-grasp domain DOE58_RS15510 PF08443 RimK-like ATP-grasp domain DOE58_RS15515 PF00881 Nitroreductase family DOE58_RS15520 PF07214 Protein of unknown function (DUF1418) DOE58_RS15525 PF00462 Glutaredoxin DOE58_RS15530 PF11045 Putative inner membrane protein of Enterobacteriaceae DOE58_RS15540 PF02080 TrkA-C domain DOE58_RS15540 PF06826 Predicted Permease Membrane Region DOE58_RS15550 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS15555 PF07690 Major Facilitator Superfamily DOE58_RS15565 PF07690 Major Facilitator Superfamily DOE58_RS15575 PF01569 PAP2 superfamily DOE58_RS15580 PF08220 DeoR-like helix-turn-helix domain DOE58_RS15580 PF00455 DeoR C terminal sensor domain DOE58_RS15585 PF00768 D-alanyl-D-alanine carboxypeptidase DOE58_RS15585 PF07943 Penicillin-binding protein 5, C-terminal domain DOE58_RS15590 PF13417 Glutathione S-transferase, N-terminal domain DOE58_RS15590 PF00043 Glutathione S-transferase, C-terminal domain DOE58_RS15595 PF07995 Glucose / Sorbosone dehydrogenase DOE58_RS15600 PF10799 Biofilm formation protein (YliH/bssR) DOE58_RS15605 PF00919 Uncharacterized protein family UPF0004 DOE58_RS15605 PF18693 TRAM domain DOE58_RS15605 PF04055 Radical SAM superfamily DOE58_RS15610 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE58_RS15610 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS15615 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS15620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE58_RS15625 PF00005 ABC transporter DOE58_RS15625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE58_RS15630 PF01112 Asparaginase DOE58_RS15635 PF03454 MoeA C-terminal region (domain IV) DOE58_RS15635 PF00994 Probable molybdopterin binding domain DOE58_RS15635 PF03453 MoeA N-terminal region (domain I and II) DOE58_RS15640 PF00899 ThiF family DOE58_RS15645 PF04055 Radical SAM superfamily DOE58_RS15650 PF02901 Pyruvate formate lyase-like DOE58_RS15650 PF01228 Glycine radical DOE58_RS15660 PF07350 Protein of unknown function (DUF1479) DOE58_RS15665 PF00005 ABC transporter DOE58_RS15665 PF12848 ABC transporter DOE58_RS15670 PF17969 L,D-transpeptidase C-terminal domain DOE58_RS15670 PF03734 L,D-transpeptidase catalytic domain DOE58_RS15675 PF03600 Citrate transporter DOE58_RS15680 PF02742 Iron dependent repressor, metal binding and dimerisation domain DOE58_RS15680 PF01325 Iron dependent repressor, N-terminal DNA binding domain DOE58_RS15690 PF00884 Sulfatase DOE58_RS15695 PF13505 Outer membrane protein beta-barrel domain DOE58_RS15700 PF00892 EamA-like transporter family DOE58_RS15705 PF00210 Ferritin-like domain DOE58_RS15715 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE58_RS15720 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS15725 PF00005 ABC transporter DOE58_RS15730 PF00924 Mechanosensitive ion channel DOE58_RS15735 PF05971 RNA methyltransferase DOE58_RS15740 PF01258 Prokaryotic dksA/traR C4-type zinc finger DOE58_RS15745 PF07338 Protein of unknown function (DUF1471) DOE58_RS15750 PF02885 Glycosyl transferase family, helical bundle domain DOE58_RS15755 PF06733 DEAD_2 DOE58_RS15755 PF13307 Helicase C-terminal domain DOE58_RS15760 PF00270 DEAD/DEAH box helicase DOE58_RS15760 PF00271 Helicase conserved C-terminal domain DOE58_RS15765 PF09209 Tetracyclin repressor-like, C-terminal domain DOE58_RS15765 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS15770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE58_RS15775 PF00005 ABC transporter DOE58_RS15790 PF11076 Putative inner membrane protein YbhQ DOE58_RS15795 PF03372 Endonuclease/Exonuclease/phosphatase family DOE58_RS15800 PF13091 PLD-like domain DOE58_RS15805 PF03706 Lysylphosphatidylglycerol synthase TM region DOE58_RS15830 PF01027 Inhibitor of apoptosis-promoting Bax1 DOE58_RS15835 PF02391 MoaE protein DOE58_RS15840 PF02597 ThiS family DOE58_RS15845 PF01967 MoaC family DOE58_RS15850 PF00994 Probable molybdopterin binding domain DOE58_RS15855 PF04055 Radical SAM superfamily DOE58_RS15855 PF06463 Molybdenum Cofactor Synthesis C DOE58_RS15860 PF01933 Uncharacterised protein family UPF0052 DOE58_RS15865 PF14496 C-terminal novel E3 ligase, LRR-interacting DOE58_RS15865 PF12468 Type III secretion system leucine rich repeat protein DOE58_RS15875 PF02151 UvrB/uvrC motif DOE58_RS15875 PF00271 Helicase conserved C-terminal domain DOE58_RS15875 PF17757 UvrB interaction domain DOE58_RS15875 PF12344 Ultra-violet resistance protein B DOE58_RS15875 PF04851 Type III restriction enzyme, res subunit DOE58_RS15890 PF08241 Methyltransferase domain DOE58_RS15895 PF00155 Aminotransferase class I and II DOE58_RS15900 PF06968 Biotin and Thiamin Synthesis associated domain DOE58_RS15900 PF04055 Radical SAM superfamily DOE58_RS15905 PF00202 Aminotransferase class-III DOE58_RS15910 PF01161 Phosphatidylethanolamine-binding protein DOE58_RS15915 PF00221 Aromatic amino acid lyase DOE58_RS15920 PF17391 Urocanase N-terminal domain DOE58_RS15920 PF01175 Urocanase Rossmann-like domain DOE58_RS15920 PF17392 Urocanase C-terminal domain DOE58_RS15925 PF07702 UTRA domain DOE58_RS15925 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS15930 PF00491 Arginase family DOE58_RS15935 PF01979 Amidohydrolase family DOE58_RS15940 PF01095 Pectinesterase DOE58_RS15945 PF10282 Lactonase, 7-bladed beta-propeller DOE58_RS15955 PF03459 TOBE domain DOE58_RS15955 PF00005 ABC transporter DOE58_RS15960 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS15970 PF10766 Multidrug efflux pump-associated protein AcrZ DOE58_RS15975 PF03459 TOBE domain DOE58_RS15975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS15980 PF00005 ABC transporter DOE58_RS15990 PF16363 GDP-mannose 4,6 dehydratase DOE58_RS15995 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DOE58_RS15995 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DOE58_RS16000 PF08544 GHMP kinases C terminal DOE58_RS16000 PF00288 GHMP kinases N terminal domain DOE58_RS16000 PF10509 Galactokinase galactose-binding signature DOE58_RS16005 PF01263 Aldose 1-epimerase DOE58_RS16015 PF00300 Histidine phosphatase superfamily (branch 1) DOE58_RS16020 PF00005 ABC transporter DOE58_RS16025 PF01032 FecCD transport family DOE58_RS16030 PF00793 DAHP synthetase I family DOE58_RS16035 PF13985 YbgS-like protein DOE58_RS16040 PF01545 Cation efflux family DOE58_RS16045 PF04973 Nicotinamide mononucleotide transporter DOE58_RS16050 PF02445 Quinolinate synthetase A protein DOE58_RS16085 PF13174 Tetratricopeptide repeat DOE58_RS16085 PF16331 TolA binding protein trimerisation DOE58_RS16090 PF00691 OmpA family DOE58_RS16095 PF07676 WD40-like Beta Propeller Repeat DOE58_RS16095 PF04052 TolB amino-terminal domain DOE58_RS16100 PF06519 TolA C-terminal DOE58_RS16105 PF02472 Biopolymer transport protein ExbD/TolR DOE58_RS16110 PF01618 MotA/TolQ/ExbB proton channel family DOE58_RS16115 PF03061 Thioesterase superfamily DOE58_RS16120 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) DOE58_RS16125 PF08173 Membrane bound YbgT-like protein DOE58_RS16130 PF02322 Cytochrome bd terminal oxidase subunit II DOE58_RS16135 PF01654 Cytochrome bd terminal oxidase subunit I DOE58_RS16140 PF00549 CoA-ligase DOE58_RS16140 PF02629 CoA binding domain DOE58_RS16145 PF00549 CoA-ligase DOE58_RS16145 PF08442 ATP-grasp domain DOE58_RS16150 PF00364 Biotin-requiring enzyme DOE58_RS16150 PF02817 e3 binding domain DOE58_RS16150 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DOE58_RS16155 PF16870 2-oxoglutarate dehydrogenase C-terminal DOE58_RS16155 PF02779 Transketolase, pyrimidine binding domain DOE58_RS16155 PF00676 Dehydrogenase E1 component DOE58_RS16155 PF16078 2-oxoglutarate dehydrogenase N-terminus DOE58_RS16160 PF13085 2Fe-2S iron-sulfur cluster binding domain DOE58_RS16165 PF02910 Fumarate reductase flavoprotein C-term DOE58_RS16165 PF00890 FAD binding domain DOE58_RS16170 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DOE58_RS16175 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DOE58_RS16190 PF00285 Citrate synthase, C-terminal domain DOE58_RS16195 PF05145 Transition state regulatory protein AbrB DOE58_RS16200 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DOE58_RS16200 PF06827 Zinc finger found in FPG and IleRS DOE58_RS16200 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DOE58_RS16220 PF17994 Galactofuranosyltransferase 2 N-terminal DOE58_RS16225 PF00005 ABC transporter DOE58_RS16230 PF01061 ABC-2 type transporter DOE58_RS16245 PF03275 UDP-galactopyranose mutase DOE58_RS16260 PF00589 Phage integrase family DOE58_RS16270 PF03746 LamB/YcsF family DOE58_RS16275 PF02626 Carboxyltransferase domain, subdomain A and B DOE58_RS16280 PF02682 Carboxyltransferase domain, subdomain C and D DOE58_RS16285 PF01784 NIF3 (NGG1p interacting factor 3) DOE58_RS16295 PF00854 POT family DOE58_RS16300 PF00875 DNA photolyase DOE58_RS16300 PF03441 FAD binding domain of DNA photolyase DOE58_RS16305 PF10725 Protein of unknown function (DUF2517) DOE58_RS16310 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) DOE58_RS16315 PF03814 Potassium-transporting ATPase A subunit DOE58_RS16325 PF02669 K+-transporting ATPase, c chain DOE58_RS16330 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS16330 PF02702 Osmosensitive K+ channel His kinase sensor domain DOE58_RS16330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS16330 PF13492 GAF domain DOE58_RS16330 PF13493 Domain of unknown function (DUF4118) DOE58_RS16335 PF00072 Response regulator receiver domain DOE58_RS16335 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS16340 PF10940 Protein of unknown function (DUF2618) DOE58_RS16345 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DOE58_RS16345 PF01276 Orn/Lys/Arg decarboxylase, major domain DOE58_RS16345 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DOE58_RS16350 PF13520 Amino acid permease DOE58_RS16360 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOE58_RS16360 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOE58_RS16360 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOE58_RS16360 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOE58_RS16365 PF17206 SeqA protein N-terminal domain DOE58_RS16365 PF03925 SeqA protein C-terminal domain DOE58_RS16370 PF12697 Alpha/beta hydrolase family DOE58_RS16375 PF01402 Ribbon-helix-helix protein, copG family DOE58_RS16380 PF00258 Flavodoxin DOE58_RS16385 PF01475 Ferric uptake regulator family DOE58_RS16390 PF03466 LysR substrate binding domain DOE58_RS16390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS16395 PF14537 Cytochrome c3 DOE58_RS16395 PF00890 FAD binding domain DOE58_RS16405 PF07690 Major Facilitator Superfamily DOE58_RS16410 PF13982 YbfN-like lipoprotein DOE58_RS16415 PF03573 outer membrane porin, OprD family DOE58_RS16425 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DOE58_RS16425 PF00749 tRNA synthetases class I (E and Q), catalytic domain DOE58_RS16430 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DOE58_RS16430 PF02378 Phosphotransferase system, EIIC DOE58_RS16430 PF00367 phosphotransferase system, EIIB DOE58_RS16435 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DOE58_RS16440 PF01979 Amidohydrolase family DOE58_RS16445 PF01047 MarR family DOE58_RS16445 PF00480 ROK family DOE58_RS16450 PF13344 Haloacid dehalogenase-like hydrolase DOE58_RS16455 PF00733 Asparagine synthase DOE58_RS16455 PF13537 Glutamine amidotransferase domain DOE58_RS16495 PF01494 FAD binding domain DOE58_RS16500 PF01938 TRAM domain DOE58_RS16500 PF00919 Uncharacterized protein family UPF0004 DOE58_RS16500 PF04055 Radical SAM superfamily DOE58_RS16505 PF02562 PhoH-like protein DOE58_RS16510 PF02130 Uncharacterized protein family UPF0054 DOE58_RS16515 PF00571 CBS domain DOE58_RS16515 PF03471 Transporter associated domain DOE58_RS16520 PF00795 Carbon-nitrogen hydrolase DOE58_RS16525 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE58_RS16530 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS16535 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS16540 PF00005 ABC transporter DOE58_RS16545 PF01156 Inosine-uridine preferring nucleoside hydrolase DOE58_RS16550 PF07295 Zinc-ribbon containing domain DOE58_RS16555 PF00158 Sigma-54 interaction domain DOE58_RS16555 PF00989 PAS fold DOE58_RS16555 PF02954 Bacterial regulatory protein, Fis family DOE58_RS16560 PF03812 2-keto-3-deoxygluconate permease DOE58_RS16565 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DOE58_RS16575 PF00133 tRNA synthetases class I (I, L, M and V) DOE58_RS16575 PF08264 Anticodon-binding domain of tRNA DOE58_RS16575 PF13603 Leucyl-tRNA synthetase, Domain 2 DOE58_RS16580 PF04390 Lipopolysaccharide-assembly DOE58_RS16585 PF06144 DNA polymerase III, delta subunit DOE58_RS16585 PF14840 Processivity clamp loader gamma complex DNA pol III C-term DOE58_RS16590 PF01467 Cytidylyltransferase-like DOE58_RS16595 PF00155 Aminotransferase class I and II DOE58_RS16600 PF00300 Histidine phosphatase superfamily (branch 1) DOE58_RS16610 PF02590 Predicted SPOUT methyltransferase DOE58_RS16615 PF00905 Penicillin binding protein transpeptidase domain DOE58_RS16615 PF03717 Penicillin-binding Protein dimerisation domain DOE58_RS16620 PF01098 Cell cycle protein DOE58_RS16625 PF05036 Sporulation related domain DOE58_RS16625 PF03330 Lytic transglycolase DOE58_RS16630 PF07943 Penicillin-binding protein 5, C-terminal domain DOE58_RS16630 PF00768 D-alanyl-D-alanine carboxypeptidase DOE58_RS16635 PF04359 Protein of unknown function (DUF493) DOE58_RS16640 PF03099 Biotin/lipoate A/B protein ligase family DOE58_RS16645 PF03466 LysR substrate binding domain DOE58_RS16645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS16650 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DOE58_RS16650 PF04055 Radical SAM superfamily DOE58_RS16655 PF02416 mttA/Hcf106 family DOE58_RS16660 PF00795 Carbon-nitrogen hydrolase DOE58_RS16665 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DOE58_RS16670 PF00313 'Cold-shock' DNA-binding domain DOE58_RS16675 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP DOE58_RS16685 PF03606 C4-dicarboxylate anaerobic carrier DOE58_RS16690 PF00072 Response regulator receiver domain DOE58_RS16690 PF12431 Transcriptional regulator DOE58_RS16695 PF00989 PAS fold DOE58_RS16695 PF17203 Single cache domain 3 DOE58_RS16695 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DOE58_RS16695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS16700 PF08218 Citrate lyase ligase C-terminal domain DOE58_RS16705 PF06857 Malonate decarboxylase delta subunit (MdcD) DOE58_RS16710 PF03328 HpcH/HpaI aldolase/citrate lyase family DOE58_RS16715 PF04223 Citrate lyase, alpha subunit (CitF) DOE58_RS16720 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase DOE58_RS16725 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DOE58_RS16730 PF00939 Sodium:sulfate symporter transmembrane region DOE58_RS16735 PF00445 Ribonuclease T2 family DOE58_RS16745 PF01272 Transcription elongation factor, GreA/GreB, C-term DOE58_RS16745 PF14760 Rnk N-terminus DOE58_RS16750 PF13823 Alcohol dehydrogenase GroES-associated DOE58_RS16750 PF00107 Zinc-binding dehydrogenase DOE58_RS16750 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS16755 PF00582 Universal stress protein family DOE58_RS16765 PF13247 4Fe-4S dicluster domain DOE58_RS16770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS16770 PF01568 Molydopterin dinucleotide binding domain DOE58_RS16770 PF00384 Molybdopterin oxidoreductase DOE58_RS16780 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS16780 PF13192 Thioredoxin domain DOE58_RS16785 PF10417 C-terminal domain of 1-Cys peroxiredoxin DOE58_RS16785 PF00578 AhpC/TSA family DOE58_RS16790 PF13098 Thioredoxin-like domain DOE58_RS16800 PF03466 LysR substrate binding domain DOE58_RS16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS16805 PF11922 Domain of unknown function (DUF3440) DOE58_RS16805 PF01507 Phosphoadenosine phosphosulfate reductase family DOE58_RS16810 PF02195 ParB-like nuclease domain DOE58_RS16815 PF00155 Aminotransferase class I and II DOE58_RS16820 PF00465 Iron-containing alcohol dehydrogenase DOE58_RS16825 PF04328 Selenoprotein, putative DOE58_RS16830 PF02554 Carbon starvation protein CstA DOE58_RS16830 PF13722 5TM C-terminal transporter carbon starvation CstA DOE58_RS16835 PF03061 Thioesterase superfamily DOE58_RS16845 PF00550 Phosphopantetheine attachment site DOE58_RS16845 PF00857 Isochorismatase family DOE58_RS16850 PF13193 AMP-binding enzyme C-terminal domain DOE58_RS16850 PF00501 AMP-binding enzyme DOE58_RS16855 PF00425 chorismate binding enzyme DOE58_RS16860 PF01497 Periplasmic binding protein DOE58_RS16865 PF05977 Transmembrane secretion effector DOE58_RS16870 PF01032 FecCD transport family DOE58_RS16875 PF01032 FecCD transport family DOE58_RS16880 PF00005 ABC transporter DOE58_RS16885 PF02706 Chain length determinant protein DOE58_RS16890 PF00975 Thioesterase domain DOE58_RS16890 PF00550 Phosphopantetheine attachment site DOE58_RS16890 PF00668 Condensation domain DOE58_RS16890 PF13193 AMP-binding enzyme C-terminal domain DOE58_RS16890 PF00501 AMP-binding enzyme DOE58_RS16895 PF03621 MbtH-like protein DOE58_RS16900 PF11806 Domain of unknown function (DUF3327) DOE58_RS16900 PF00756 Putative esterase DOE58_RS16905 PF00593 TonB dependent receptor DOE58_RS16905 PF07715 TonB-dependent Receptor Plug Domain DOE58_RS16910 PF01648 4'-phosphopantetheinyl transferase superfamily DOE58_RS16910 PF17837 4'-phosphopantetheinyl transferase N-terminal domain DOE58_RS16915 PF04107 Glutamate-cysteine ligase family 2(GCS2) DOE58_RS16920 PF06643 Protein of unknown function (DUF1158) DOE58_RS16925 PF12833 Helix-turn-helix domain DOE58_RS16930 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS16930 PF16295 Tetracyclin repressor-like, C-terminal domain DOE58_RS16935 PF04237 YjbR DOE58_RS16940 PF00881 Nitroreductase family DOE58_RS16945 PF03797 Autotransporter beta-domain DOE58_RS16945 PF00657 GDSL-like Lipase/Acylhydrolase DOE58_RS16955 PF00924 Mechanosensitive ion channel DOE58_RS16960 PF00324 Amino acid permease DOE58_RS16970 PF04224 Protein of unknown function, DUF417 DOE58_RS16975 PF07338 Protein of unknown function (DUF1471) DOE58_RS16980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE58_RS16980 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS16985 PF12852 Cupin DOE58_RS16985 PF12833 Helix-turn-helix domain DOE58_RS16990 PF00873 AcrB/AcrD/AcrF family DOE58_RS17005 PF04138 GtrA-like protein DOE58_RS17010 PF00535 Glycosyl transferase family 2 DOE58_RS17035 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS17050 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS17050 PF00072 Response regulator receiver domain DOE58_RS17055 PF00419 Fimbrial protein DOE58_RS17060 PF00419 Fimbrial protein DOE58_RS17065 PF00577 Outer membrane usher protein DOE58_RS17065 PF13953 PapC C-terminal domain DOE58_RS17065 PF13954 PapC N-terminal domain DOE58_RS17070 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS17070 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE58_RS17080 PF00419 Fimbrial protein DOE58_RS17090 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DOE58_RS17090 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DOE58_RS17100 PF04307 LexA-binding, inner membrane-associated putative hydrolase DOE58_RS17115 PF09190 DALR domain DOE58_RS17115 PF01406 tRNA synthetases class I (C) catalytic domain DOE58_RS17120 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DOE58_RS17125 PF12850 Calcineurin-like phosphoesterase superfamily domain DOE58_RS17135 PF00731 AIR carboxylase DOE58_RS17140 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DOE58_RS17140 PF02222 ATP-grasp domain DOE58_RS17150 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS17155 PF09383 NIL domain DOE58_RS17155 PF00005 ABC transporter DOE58_RS17160 PF03180 NLPA lipoprotein DOE58_RS17175 PF00005 ABC transporter DOE58_RS17180 PF13472 GDSL-like Lipase/Acylhydrolase family DOE58_RS17185 PF00106 short chain dehydrogenase DOE58_RS17190 PF00085 Thioredoxin DOE58_RS17195 PF03649 Uncharacterised protein family (UPF0014) DOE58_RS17200 PF00005 ABC transporter DOE58_RS17205 PF01145 SPFH domain / Band 7 family DOE58_RS17205 PF16200 C-terminal region of band_7 DOE58_RS17210 PF01957 NfeD-like C-terminal, partner-binding DOE58_RS17215 PF13411 MerR HTH family regulatory protein DOE58_RS17220 PF00403 Heavy-metal-associated domain DOE58_RS17230 PF01963 TraB family DOE58_RS17235 PF04073 Aminoacyl-tRNA editing domain DOE58_RS17240 PF02872 5'-nucleotidase, C-terminal domain DOE58_RS17240 PF00149 Calcineurin-like phosphoesterase DOE58_RS17245 PF07690 Major Facilitator Superfamily DOE58_RS17250 PF00999 Sodium/hydrogen exchanger family DOE58_RS17250 PF02254 TrkA-N domain DOE58_RS17255 PF00294 pfkB family carbohydrate kinase DOE58_RS17260 PF07859 alpha/beta hydrolase fold DOE58_RS17265 PF00762 Ferrochelatase DOE58_RS17270 PF05191 Adenylate kinase, active site lid DOE58_RS17280 PF00183 Hsp90 protein DOE58_RS17280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS17285 PF13662 Toprim domain DOE58_RS17285 PF02132 RecR protein DOE58_RS17290 PF02575 YbaB/EbfC DNA-binding family DOE58_RS17295 PF12170 DNA polymerase III tau subunit V interacting with alpha DOE58_RS17295 PF12169 DNA polymerase III subunits gamma and tau domain III DOE58_RS17295 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DOE58_RS17300 PF00156 Phosphoribosyl transferase domain DOE58_RS17310 PF04304 Protein of unknown function (DUF454) DOE58_RS17315 PF07445 Primosomal replication protein priC DOE58_RS17320 PF10689 Protein of unknown function (DUF2496) DOE58_RS17325 PF04754 Putative transposase, YhgA-like DOE58_RS17330 PF12794 Mechanosensitive ion channel inner membrane domain 1 DOE58_RS17330 PF12795 Mechanosensitive ion channel porin domain DOE58_RS17330 PF00924 Mechanosensitive ion channel DOE58_RS17335 PF08361 MAATS-type transcriptional repressor, C-terminal region DOE58_RS17335 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS17340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE58_RS17340 PF00529 HlyD membrane-fusion protein of T1SS DOE58_RS17345 PF00873 AcrB/AcrD/AcrF family DOE58_RS17350 PF10757 Biofilm formation regulator YbaJ DOE58_RS17355 PF05321 Haemolysin expression modulating protein DOE58_RS17360 PF12464 Maltose acetyltransferase DOE58_RS17360 PF14602 Hexapeptide repeat of succinyl-transferase DOE58_RS17365 PF10777 Inner membrane protein YlaC DOE58_RS17370 PF00444 Ribosomal protein L36 DOE58_RS17375 PF01197 Ribosomal protein L31 DOE58_RS17380 PF00563 EAL domain DOE58_RS17380 PF12792 CSS motif domain associated with EAL DOE58_RS17390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DOE58_RS17395 PF09619 Type III secretion system lipoprotein chaperone (YscW) DOE58_RS17405 PF00909 Ammonium Transporter Family DOE58_RS17410 PF00543 Nitrogen regulatory protein P-II DOE58_RS17415 PF00664 ABC transporter transmembrane region DOE58_RS17415 PF00005 ABC transporter DOE58_RS17420 PF00005 ABC transporter DOE58_RS17420 PF00664 ABC transporter transmembrane region DOE58_RS17425 PF13404 AsnC-type helix-turn-helix domain DOE58_RS17425 PF01037 Lrp/AsnC ligand binding domain DOE58_RS17440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE58_RS17440 PF12793 Sugar transport-related sRNA regulator N-term DOE58_RS17445 PF06508 Queuosine biosynthesis protein QueC DOE58_RS17460 PF13145 PPIC-type PPIASE domain DOE58_RS17465 PF00216 Bacterial DNA-binding protein DOE58_RS17470 PF02190 ATP-dependent protease La (LON) substrate-binding domain DOE58_RS17470 PF00004 ATPase family associated with various cellular activities (AAA) DOE58_RS17470 PF05362 Lon protease (S16) C-terminal proteolytic domain DOE58_RS17475 PF06689 ClpX C4-type zinc finger DOE58_RS17475 PF10431 C-terminal, D2-small domain, of ClpB protein DOE58_RS17475 PF07724 AAA domain (Cdc48 subfamily) DOE58_RS17480 PF00574 Clp protease DOE58_RS17485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOE58_RS17485 PF05698 Bacterial trigger factor protein (TF) C-terminus DOE58_RS17485 PF05697 Bacterial trigger factor protein (TF) DOE58_RS17500 PF01722 BolA-like protein DOE58_RS17510 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DOE58_RS17510 PF03923 Uncharacterized lipoprotein DOE58_RS17515 PF07690 Major Facilitator Superfamily DOE58_RS17520 PF06481 COX Aromatic Rich Motif DOE58_RS17520 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DOE58_RS17525 PF00115 Cytochrome C and Quinol oxidase polypeptide I DOE58_RS17530 PF00510 Cytochrome c oxidase subunit III DOE58_RS17535 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DOE58_RS17540 PF01040 UbiA prenyltransferase family DOE58_RS17545 PF07690 Major Facilitator Superfamily DOE58_RS17550 PF04461 Protein of unknown function (DUF520) DOE58_RS17555 PF08546 Ketopantoate reductase PanE/ApbA C terminal DOE58_RS17555 PF02558 Ketopantoate reductase PanE/ApbA DOE58_RS17560 PF01965 DJ-1/PfpI family DOE58_RS17570 PF00266 Aminotransferase class-V DOE58_RS17575 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS17575 PF07702 UTRA domain DOE58_RS17580 PF01547 Bacterial extracellular solute-binding protein DOE58_RS17585 PF00005 ABC transporter DOE58_RS17585 PF08402 TOBE domain DOE58_RS17590 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS17595 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS17600 PF02568 Thiamine biosynthesis protein (ThiI) DOE58_RS17600 PF02926 THUMP domain DOE58_RS17605 PF02609 Exonuclease VII small subunit DOE58_RS17610 PF00348 Polyprenyl synthetase DOE58_RS17615 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DOE58_RS17615 PF02779 Transketolase, pyrimidine binding domain DOE58_RS17615 PF02780 Transketolase, C-terminal domain DOE58_RS17620 PF00248 Aldo/keto reductase family DOE58_RS17625 PF04608 Phosphatidylglycerophosphatase A DOE58_RS17630 PF00586 AIR synthase related protein, N-terminal domain DOE58_RS17630 PF02769 AIR synthase related protein, C-terminal domain DOE58_RS17635 PF01029 NusB family DOE58_RS17640 PF00885 6,7-dimethyl-8-ribityllumazine synthase DOE58_RS17645 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DOE58_RS17645 PF01872 RibD C-terminal domain DOE58_RS17650 PF03477 ATP cone domain DOE58_RS17655 PF11622 Protein of unknown function (DUF3251) DOE58_RS17660 PF03502 Nucleoside-specific channel-forming protein, Tsx DOE58_RS17670 PF01797 Transposase IS200 like DOE58_RS17695 PF01844 HNH endonuclease DOE58_RS17700 PF02355 Protein export membrane protein DOE58_RS17700 PF07549 SecD/SecF GG Motif DOE58_RS17705 PF02355 Protein export membrane protein DOE58_RS17705 PF13721 SecD export protein N-terminal TM region DOE58_RS17705 PF07549 SecD/SecF GG Motif DOE58_RS17710 PF02699 Preprotein translocase subunit DOE58_RS17715 PF01702 Queuine tRNA-ribosyltransferase DOE58_RS17725 PF02547 Queuosine biosynthesis protein DOE58_RS17730 PF04336 Acyl carrier protein phosphodiesterase DOE58_RS17735 PF10417 C-terminal domain of 1-Cys peroxiredoxin DOE58_RS17735 PF00578 AhpC/TSA family DOE58_RS17745 PF00128 Alpha amylase, catalytic domain DOE58_RS17745 PF02903 Alpha amylase, N-terminal ig-like domain DOE58_RS17750 PF00324 Amino acid permease DOE58_RS17755 PF05525 Branched-chain amino acid transport protein DOE58_RS17765 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS17765 PF00989 PAS fold DOE58_RS17765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS17765 PF11808 Phosphate regulon sensor protein PhoR DOE58_RS17770 PF00072 Response regulator receiver domain DOE58_RS17770 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS17775 PF12320 Type 5 capsule protein repressor C-terminal domain DOE58_RS17775 PF00149 Calcineurin-like phosphoesterase DOE58_RS17780 PF13476 AAA domain DOE58_RS17785 PF07690 Major Facilitator Superfamily DOE58_RS17790 PF00480 ROK family DOE58_RS17795 PF04381 Putative exonuclease, RdgC DOE58_RS17800 PF06865 Pyrimidine/purine nucleoside phosphorylase DOE58_RS17805 PF07302 AroM protein DOE58_RS17810 PF16362 YaiA protein DOE58_RS17815 PF01202 Shikimate kinase DOE58_RS17820 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DOE58_RS17825 PF03807 NADP oxidoreductase coenzyme F420-dependent DOE58_RS17825 PF14748 Pyrroline-5-carboxylate reductase dimerisation DOE58_RS17830 PF05230 MASE2 domain DOE58_RS17830 PF00990 Diguanylate cyclase, GGDEF domain DOE58_RS17835 PF07769 psiF repeat DOE58_RS17845 PF10796 Sigma-S stabilisation anti-adaptor protein DOE58_RS17850 PF07690 Major Facilitator Superfamily DOE58_RS17860 PF07478 D-ala D-ala ligase C-terminus DOE58_RS17860 PF01820 D-ala D-ala ligase N-terminus DOE58_RS17865 PF10953 Protein of unknown function (DUF2754) DOE58_RS17870 PF10954 Protein of unknown function (DUF2755) DOE58_RS17875 PF07759 Protein of unknown function (DUF1615) DOE58_RS17880 PF05992 SbmA/BacA-like family DOE58_RS17890 PF00144 Beta-lactamase DOE58_RS17895 PF15977 Winged helix-turn-helix DNA binding DOE58_RS17900 PF03797 Autotransporter beta-domain DOE58_RS17905 PF00490 Delta-aminolevulinic acid dehydratase DOE58_RS17910 PF00501 AMP-binding enzyme DOE58_RS17910 PF13193 AMP-binding enzyme C-terminal domain DOE58_RS17910 PF16177 Acetyl-coenzyme A synthetase N-terminus DOE58_RS17915 PF03972 MmgE/PrpD family DOE58_RS17920 PF00285 Citrate synthase, C-terminal domain DOE58_RS17930 PF06506 Propionate catabolism activator DOE58_RS17930 PF00158 Sigma-54 interaction domain DOE58_RS17930 PF02954 Bacterial regulatory protein, Fis family DOE58_RS17935 PF07338 Protein of unknown function (DUF1471) DOE58_RS17940 PF01810 LysE type translocator DOE58_RS17945 PF07715 TonB-dependent Receptor Plug Domain DOE58_RS17945 PF00593 TonB dependent receptor DOE58_RS17960 PF02322 Cytochrome bd terminal oxidase subunit II DOE58_RS17965 PF01654 Cytochrome bd terminal oxidase subunit I DOE58_RS17975 PF08774 VRR-NUC domain DOE58_RS17975 PF04851 Type III restriction enzyme, res subunit DOE58_RS17980 PF01555 DNA methylase DOE58_RS17980 PF18273 Type III R-M EcoP15I C-terminal domain DOE58_RS17985 PF07690 Major Facilitator Superfamily DOE58_RS17995 PF09278 MerR, DNA binding DOE58_RS17995 PF00376 MerR family regulatory protein DOE58_RS18000 PF00403 Heavy-metal-associated domain DOE58_RS18005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE58_RS18010 PF00873 AcrB/AcrD/AcrF family DOE58_RS18015 PF02321 Outer membrane efflux protein DOE58_RS18035 PF13505 Outer membrane protein beta-barrel domain DOE58_RS18050 PF00563 EAL domain DOE58_RS18050 PF12792 CSS motif domain associated with EAL DOE58_RS18075 PF16970 Type-1 fimbrial protein, A DOE58_RS18080 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS18080 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE58_RS18085 PF13953 PapC C-terminal domain DOE58_RS18085 PF13954 PapC N-terminal domain DOE58_RS18085 PF00577 Outer membrane usher protein DOE58_RS18095 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS18095 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE58_RS18140 PF14659 Phage integrase, N-terminal SAM-like domain DOE58_RS18140 PF00589 Phage integrase family DOE58_RS18140 PF13356 Arm DNA-binding domain DOE58_RS18150 PF00171 Aldehyde dehydrogenase family DOE58_RS18155 PF01472 PUA domain DOE58_RS18155 PF00696 Amino acid kinase family DOE58_RS18160 PF00267 Gram-negative porin DOE58_RS18165 PF07417 Sigma factor-binding transcriptional regulator Crl DOE58_RS18170 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) DOE58_RS18175 PF00156 Phosphoribosyl transferase domain DOE58_RS18180 PF01546 Peptidase family M20/M25/M40 DOE58_RS18180 PF07687 Peptidase dimerisation domain DOE58_RS18185 PF00472 RF-1 domain DOE58_RS18195 PF00817 impB/mucB/samB family DOE58_RS18195 PF11798 IMS family HHH motif DOE58_RS18195 PF11799 impB/mucB/samB family C-terminal domain DOE58_RS18200 PF03734 L,D-transpeptidase catalytic domain DOE58_RS18205 PF13230 Glutamine amidotransferases class-II DOE58_RS18210 PF13580 SIS domain DOE58_RS18215 PF02770 Acyl-CoA dehydrogenase, middle domain DOE58_RS18215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE58_RS18215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOE58_RS18215 PF09317 Domain of unknown function (DUF1974) DOE58_RS18220 PF00795 Carbon-nitrogen hydrolase DOE58_RS18265 PF01037 Lrp/AsnC ligand binding domain DOE58_RS18265 PF13404 AsnC-type helix-turn-helix domain DOE58_RS18310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS18310 PF03466 LysR substrate binding domain DOE58_RS18330 PF00577 Outer membrane usher protein DOE58_RS18330 PF13954 PapC N-terminal domain DOE58_RS18330 PF13953 PapC C-terminal domain DOE58_RS18335 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE58_RS18335 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS18370 PF05593 RHS Repeat DOE58_RS18370 PF03527 RHS protein DOE58_RS18370 PF14220 Domain of unknown function (DUF4329) DOE58_RS18380 PF05593 RHS Repeat DOE58_RS18380 PF05488 PAAR motif DOE58_RS18390 PF04717 Type VI secretion system, phage-baseplate injector DOE58_RS18415 PF06744 Type VI secretion protein IcmF C-terminal DOE58_RS18415 PF14331 ImcF-related N-terminal domain DOE58_RS18415 PF06761 Intracellular multiplication and human macrophage-killing DOE58_RS18435 PF05736 OprF membrane domain DOE58_RS18435 PF00691 OmpA family DOE58_RS18440 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DOE58_RS18465 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath DOE58_RS18470 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 DOE58_RS18480 PF17871 AAA lid domain DOE58_RS18480 PF07724 AAA domain (Cdc48 subfamily) DOE58_RS18480 PF00004 ATPase family associated with various cellular activities (AAA) DOE58_RS18480 PF10431 C-terminal, D2-small domain, of ClpB protein DOE58_RS18495 PF04965 Gene 25-like lysozyme DOE58_RS18500 PF05947 Type VI secretion system, TssF DOE58_RS18520 PF00929 Exonuclease DOE58_RS18525 PF00075 RNase H DOE58_RS18530 PF08241 Methyltransferase domain DOE58_RS18535 PF00753 Metallo-beta-lactamase superfamily DOE58_RS18535 PF16123 Hydroxyacylglutathione hydrolase C-terminus DOE58_RS18540 PF01476 LysM domain DOE58_RS18540 PF01464 Transglycosylase SLT domain DOE58_RS18545 PF08241 Methyltransferase domain DOE58_RS18550 PF03372 Endonuclease/Exonuclease/phosphatase family DOE58_RS18555 PF07690 Major Facilitator Superfamily DOE58_RS18560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS18560 PF03466 LysR substrate binding domain DOE58_RS18565 PF00248 Aldo/keto reductase family DOE58_RS18610 PF09383 NIL domain DOE58_RS18610 PF00005 ABC transporter DOE58_RS18615 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS18620 PF03180 NLPA lipoprotein DOE58_RS18625 PF16358 RcsF lipoprotein DOE58_RS18630 PF01980 tRNA-methyltransferase O DOE58_RS18630 PF18389 TrmO C-terminal domain DOE58_RS18635 PF03129 Anticodon binding domain DOE58_RS18635 PF04073 Aminoacyl-tRNA editing domain DOE58_RS18635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOE58_RS18640 PF17185 NlpE C-terminal OB domain DOE58_RS18640 PF04170 NlpE N-terminal domain DOE58_RS18645 PF00472 RF-1 domain DOE58_RS18650 PF07152 YaeQ protein DOE58_RS18655 PF06786 Uncharacterised protein family (UPF0253) DOE58_RS18660 PF07073 Modulator of Rho-dependent transcription termination (ROF) DOE58_RS18665 PF01171 PP-loop family DOE58_RS18665 PF09179 TilS substrate binding domain DOE58_RS18665 PF11734 TilS substrate C-terminal domain DOE58_RS18670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE58_RS18675 PF01276 Orn/Lys/Arg decarboxylase, major domain DOE58_RS18675 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DOE58_RS18675 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DOE58_RS18680 PF18416 N-acetylglucosamine binding protein domain 2 DOE58_RS18680 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DOE58_RS18685 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DOE58_RS18690 PF07733 Bacterial DNA polymerase III alpha NTPase domain DOE58_RS18690 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DOE58_RS18690 PF02811 PHP domain DOE58_RS18690 PF01336 OB-fold nucleic acid binding domain DOE58_RS18690 PF14579 Helix-hairpin-helix motif DOE58_RS18695 PF01351 Ribonuclease HII DOE58_RS18700 PF02684 Lipid-A-disaccharide synthetase DOE58_RS18705 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DOE58_RS18705 PF00132 Bacterial transferase hexapeptide (six repeats) DOE58_RS18710 PF07977 FabA-like domain DOE58_RS18715 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DOE58_RS18715 PF00132 Bacterial transferase hexapeptide (six repeats) DOE58_RS18720 PF03938 Outer membrane protein (OmpH-like) DOE58_RS18725 PF07244 Surface antigen variable number repeat DOE58_RS18725 PF01103 Surface antigen DOE58_RS18730 PF17820 PDZ domain DOE58_RS18730 PF02163 Peptidase family M50 DOE58_RS18740 PF01255 Putative undecaprenyl diphosphate synthase DOE58_RS18750 PF13288 DXP reductoisomerase C-terminal domain DOE58_RS18750 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DOE58_RS18750 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DOE58_RS18755 PF01765 Ribosome recycling factor DOE58_RS18760 PF00696 Amino acid kinase family DOE58_RS18765 PF00889 Elongation factor TS DOE58_RS18775 PF00318 Ribosomal protein S2 DOE58_RS18780 PF00557 Metallopeptidase family M24 DOE58_RS18790 PF01842 ACT domain DOE58_RS18790 PF08335 GlnD PII-uridylyltransferase DOE58_RS18790 PF01966 HD domain DOE58_RS18790 PF01909 Nucleotidyltransferase domain DOE58_RS18795 PF00132 Bacterial transferase hexapeptide (six repeats) DOE58_RS18795 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DOE58_RS18795 PF14602 Hexapeptide repeat of succinyl-transferase DOE58_RS18800 PF07690 Major Facilitator Superfamily DOE58_RS18800 PF00083 Sugar (and other) transporter DOE58_RS18805 PF11944 Protein of unknown function (DUF3461) DOE58_RS18815 PF05651 Putative sugar diacid recognition DOE58_RS18815 PF17853 GGDEF-like domain DOE58_RS18815 PF13556 PucR C-terminal helix-turn-helix domain DOE58_RS18820 PF00595 PDZ domain DOE58_RS18825 PF13286 Phosphohydrolase-associated domain DOE58_RS18825 PF01966 HD domain DOE58_RS18830 PF01048 Phosphorylase superfamily DOE58_RS18835 PF01497 Periplasmic binding protein DOE58_RS18840 PF03458 UPF0126 domain DOE58_RS18845 PF01521 Iron-sulphur cluster biosynthesis DOE58_RS18850 PF00654 Voltage gated chloride channel DOE58_RS18855 PF00202 Aminotransferase class-III DOE58_RS18860 PF01032 FecCD transport family DOE58_RS18865 PF01497 Periplasmic binding protein DOE58_RS18870 PF00005 ABC transporter DOE58_RS18875 PF00593 TonB dependent receptor DOE58_RS18875 PF07715 TonB-dependent Receptor Plug Domain DOE58_RS18880 PF14814 Bifunctional transglycosylase second domain DOE58_RS18880 PF00905 Penicillin binding protein transpeptidase domain DOE58_RS18880 PF00912 Transglycosylase DOE58_RS18880 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal DOE58_RS18885 PF00270 DEAD/DEAH box helicase DOE58_RS18885 PF00271 Helicase conserved C-terminal domain DOE58_RS18885 PF08482 ATP-dependent helicase C-terminal DOE58_RS18885 PF04408 Helicase associated domain (HA2) DOE58_RS18890 PF02834 LigT like Phosphoesterase DOE58_RS18895 PF03749 Sugar fermentation stimulation protein RE domain DOE58_RS18895 PF17746 SfsA N-terminal OB domain DOE58_RS18900 PF01258 Prokaryotic dksA/traR C4-type zinc finger DOE58_RS18905 PF00749 tRNA synthetases class I (E and Q), catalytic domain DOE58_RS18910 PF12626 Polymerase A arginine-rich C-terminus DOE58_RS18910 PF01743 Poly A polymerase head domain DOE58_RS18910 PF12627 Probable RNA and SrmB- binding site of polymerase A DOE58_RS18915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DOE58_RS18925 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS18925 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE58_RS18930 PF13954 PapC N-terminal domain DOE58_RS18930 PF13953 PapC C-terminal domain DOE58_RS18930 PF00577 Outer membrane usher protein DOE58_RS18935 PF00419 Fimbrial protein DOE58_RS18940 PF00419 Fimbrial protein DOE58_RS18945 PF00419 Fimbrial protein DOE58_RS18950 PF00419 Fimbrial protein DOE58_RS18955 PF02548 Ketopantoate hydroxymethyltransferase DOE58_RS18960 PF02569 Pantoate-beta-alanine ligase DOE58_RS18965 PF02261 Aspartate decarboxylase DOE58_RS18970 PF01522 Polysaccharide deacetylase DOE58_RS18975 PF03610 PTS system fructose IIA component DOE58_RS18985 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS18985 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE58_RS18990 PF13953 PapC C-terminal domain DOE58_RS18990 PF13954 PapC N-terminal domain DOE58_RS18990 PF00577 Outer membrane usher protein DOE58_RS18995 PF00419 Fimbrial protein DOE58_RS19000 PF01061 ABC-2 type transporter DOE58_RS19005 PF00005 ABC transporter DOE58_RS19010 PF00484 Carbonic anhydrase DOE58_RS19015 PF00156 Phosphoribosyl transferase domain DOE58_RS19020 PF01011 PQQ enzyme repeat DOE58_RS19025 PF07731 Multicopper oxidase DOE58_RS19025 PF07732 Multicopper oxidase DOE58_RS19025 PF00394 Multicopper oxidase DOE58_RS19030 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) DOE58_RS19035 PF17284 Spermidine synthase tetramerisation domain DOE58_RS19040 PF02675 S-adenosylmethionine decarboxylase DOE58_RS19045 PF08220 DeoR-like helix-turn-helix domain DOE58_RS19045 PF00455 DeoR C terminal sensor domain DOE58_RS19050 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DOE58_RS19055 PF17042 Nucleotide-binding C-terminal domain DOE58_RS19055 PF07005 Sugar-binding N-terminal domain DOE58_RS19060 PF03812 2-keto-3-deoxygluconate permease DOE58_RS19065 PF06062 Uncharacterised protein family (UPF0231) DOE58_RS19070 PF11791 Aconitate B N-terminal domain DOE58_RS19070 PF06434 Aconitate hydratase 2 N-terminus DOE58_RS19070 PF00330 Aconitase family (aconitate hydratase) DOE58_RS19080 PF11737 Protein of unknown function (DUF3300) DOE58_RS19095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE58_RS19095 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS19100 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DOE58_RS19100 PF02817 e3 binding domain DOE58_RS19100 PF00364 Biotin-requiring enzyme DOE58_RS19105 PF00456 Transketolase, thiamine diphosphate binding domain DOE58_RS19105 PF17831 Pyruvate dehydrogenase E1 component middle domain DOE58_RS19110 PF07729 FCD domain DOE58_RS19110 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS19115 PF00324 Amino acid permease DOE58_RS19125 PF04616 Glycosyl hydrolases family 43 DOE58_RS19125 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain DOE58_RS19130 PF17113 Regulatory signalling modulator protein AmpE DOE58_RS19135 PF01510 N-acetylmuramoyl-L-alanine amidase DOE58_RS19140 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DOE58_RS19140 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DOE58_RS19150 PF07963 Prokaryotic N-terminal methylation motif DOE58_RS19155 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DOE58_RS19155 PF00437 Type II/IV secretion system protein DOE58_RS19160 PF00482 Type II secretion system (T2SS), protein F DOE58_RS19165 PF00478 IMP dehydrogenase / GMP reductase domain DOE58_RS19170 PF01121 Dephospho-CoA kinase DOE58_RS19175 PF07072 Cell division protein DOE58_RS19180 PF03884 DNA gyrase inhibitor YacG DOE58_RS19195 PF00293 NUDIX domain DOE58_RS19200 PF07517 SecA DEAD-like domain DOE58_RS19200 PF01043 SecA preprotein cross-linking domain DOE58_RS19200 PF07516 SecA Wing and Scaffold domain DOE58_RS19200 PF02810 SEC-C motif DOE58_RS19205 PF06558 Secretion monitor precursor protein (SecM) DOE58_RS19210 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DOE58_RS19215 PF00091 Tubulin/FtsZ family, GTPase domain DOE58_RS19215 PF12327 FtsZ family, C-terminal domain DOE58_RS19220 PF02491 SHS2 domain inserted in FTSA DOE58_RS19225 PF08478 POTRA domain, FtsQ-type DOE58_RS19225 PF03799 Cell division protein FtsQ DOE58_RS19230 PF01820 D-ala D-ala ligase N-terminus DOE58_RS19230 PF07478 D-ala D-ala ligase C-terminus DOE58_RS19235 PF08245 Mur ligase middle domain DOE58_RS19235 PF02875 Mur ligase family, glutamate ligase domain DOE58_RS19235 PF01225 Mur ligase family, catalytic domain DOE58_RS19240 PF03033 Glycosyltransferase family 28 N-terminal domain DOE58_RS19240 PF04101 Glycosyltransferase family 28 C-terminal domain DOE58_RS19245 PF01098 Cell cycle protein DOE58_RS19250 PF08245 Mur ligase middle domain DOE58_RS19250 PF02875 Mur ligase family, glutamate ligase domain DOE58_RS19255 PF00953 Glycosyl transferase family 4 DOE58_RS19255 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DOE58_RS19260 PF01225 Mur ligase family, catalytic domain DOE58_RS19260 PF02875 Mur ligase family, glutamate ligase domain DOE58_RS19260 PF08245 Mur ligase middle domain DOE58_RS19265 PF01225 Mur ligase family, catalytic domain DOE58_RS19265 PF02875 Mur ligase family, glutamate ligase domain DOE58_RS19265 PF08245 Mur ligase middle domain DOE58_RS19270 PF03717 Penicillin-binding Protein dimerisation domain DOE58_RS19270 PF00905 Penicillin binding protein transpeptidase domain DOE58_RS19275 PF04999 Cell division protein FtsL DOE58_RS19280 PF01795 MraW methylase family DOE58_RS19285 PF02381 MraZ protein, putative antitoxin-like DOE58_RS19290 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS19290 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DOE58_RS19295 PF10369 Small subunit of acetolactate synthase DOE58_RS19300 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE58_RS19300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE58_RS19300 PF00205 Thiamine pyrophosphate enzyme, central domain DOE58_RS19305 PF03466 LysR substrate binding domain DOE58_RS19305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS19310 PF08054 Leucine operon leader peptide DOE58_RS19315 PF00682 HMGL-like DOE58_RS19315 PF08502 LeuA allosteric (dimerisation) domain DOE58_RS19320 PF00180 Isocitrate/isopropylmalate dehydrogenase DOE58_RS19325 PF00330 Aconitase family (aconitate hydratase) DOE58_RS19330 PF00694 Aconitase C-terminal domain DOE58_RS19340 PF12793 Sugar transport-related sRNA regulator N-term DOE58_RS19340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE58_RS19350 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS19355 PF00005 ABC transporter DOE58_RS19360 PF09335 SNARE associated Golgi protein DOE58_RS19365 PF02311 AraC-like ligand binding domain DOE58_RS19365 PF12833 Helix-turn-helix domain DOE58_RS19370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE58_RS19375 PF02610 L-arabinose isomerase DOE58_RS19375 PF11762 L-arabinose isomerase C-terminal domain DOE58_RS19380 PF00596 Class II Aldolase and Adducin N-terminal domain DOE58_RS19400 PF00136 DNA polymerase family B DOE58_RS19400 PF03104 DNA polymerase family B, exonuclease domain DOE58_RS19405 PF00271 Helicase conserved C-terminal domain DOE58_RS19405 PF12137 RNA polymerase recycling family C-terminal DOE58_RS19405 PF18337 RapA N-terminal Tudor like domain DOE58_RS19405 PF18339 RapA N-terminal Tudor like domain 1 DOE58_RS19405 PF00176 SNF2 family N-terminal domain DOE58_RS19410 PF00849 RNA pseudouridylate synthase DOE58_RS19415 PF00226 DnaJ domain DOE58_RS19415 PF05099 Tellurite resistance protein TerB DOE58_RS19420 PF04453 LPS transport system D DOE58_RS19420 PF03968 OstA-like protein DOE58_RS19425 PF00639 PPIC-type PPIASE domain DOE58_RS19425 PF09312 SurA N-terminal domain DOE58_RS19430 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DOE58_RS19435 PF00398 Ribosomal RNA adenine dimethylase DOE58_RS19440 PF04379 ApaG domain DOE58_RS19445 PF00149 Calcineurin-like phosphoesterase DOE58_RS19450 PF00186 Dihydrofolate reductase DOE58_RS19460 PF02254 TrkA-N domain DOE58_RS19460 PF00999 Sodium/hydrogen exchanger family DOE58_RS19465 PF02525 Flavodoxin-like fold DOE58_RS19480 PF00884 Sulfatase DOE58_RS19500 PF06004 Bacterial protein of unknown function (DUF903) DOE58_RS19505 PF00083 Sugar (and other) transporter DOE58_RS19515 PF01494 FAD binding domain DOE58_RS19520 PF01012 Electron transfer flavoprotein domain DOE58_RS19520 PF00766 Electron transfer flavoprotein FAD-binding domain DOE58_RS19525 PF01012 Electron transfer flavoprotein domain DOE58_RS19535 PF02028 BCCT, betaine/carnitine/choline family transporter DOE58_RS19540 PF02770 Acyl-CoA dehydrogenase, middle domain DOE58_RS19540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOE58_RS19540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE58_RS19545 PF02515 CoA-transferase family III DOE58_RS19550 PF00501 AMP-binding enzyme DOE58_RS19550 PF13193 AMP-binding enzyme C-terminal domain DOE58_RS19555 PF00378 Enoyl-CoA hydratase/isomerase DOE58_RS19560 PF00132 Bacterial transferase hexapeptide (six repeats) DOE58_RS19565 PF07180 CaiF/GrlA transcriptional regulator DOE58_RS19570 PF02142 MGS-like domain DOE58_RS19570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOE58_RS19570 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DOE58_RS19575 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DOE58_RS19575 PF00117 Glutamine amidotransferase class-I DOE58_RS19585 PF01113 Dihydrodipicolinate reductase, N-terminus DOE58_RS19585 PF05173 Dihydrodipicolinate reductase, C-terminus DOE58_RS19590 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DOE58_RS19595 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase DOE58_RS19600 PF04223 Citrate lyase, alpha subunit (CitF) DOE58_RS19605 PF03328 HpcH/HpaI aldolase/citrate lyase family DOE58_RS19610 PF06857 Malonate decarboxylase delta subunit (MdcD) DOE58_RS19615 PF08218 Citrate lyase ligase C-terminal domain DOE58_RS19615 PF00583 Acetyltransferase (GNAT) family DOE58_RS19620 PF03390 2-hydroxycarboxylate transporter family DOE58_RS19625 PF04277 Oxaloacetate decarboxylase, gamma chain DOE58_RS19630 PF00364 Biotin-requiring enzyme DOE58_RS19630 PF00682 HMGL-like DOE58_RS19630 PF02436 Conserved carboxylase domain DOE58_RS19635 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit DOE58_RS19640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS19640 PF17203 Single cache domain 3 DOE58_RS19645 PF00072 Response regulator receiver domain DOE58_RS19645 PF12431 Transcriptional regulator DOE58_RS19650 PF01156 Inosine-uridine preferring nucleoside hydrolase DOE58_RS19660 PF02401 LytB protein DOE58_RS19665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOE58_RS19670 PF01252 Signal peptidase (SPase) II DOE58_RS19675 PF08264 Anticodon-binding domain of tRNA DOE58_RS19675 PF06827 Zinc finger found in FPG and IleRS DOE58_RS19675 PF00133 tRNA synthetases class I (I, L, M and V) DOE58_RS19680 PF06574 FAD synthetase DOE58_RS19680 PF01687 Riboflavin kinase DOE58_RS19685 PF10837 Protein of unknown function (DUF2575) DOE58_RS19690 PF01649 Ribosomal protein S20 DOE58_RS19700 PF01055 Glycosyl hydrolases family 31 DOE58_RS19705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS19705 PF03466 LysR substrate binding domain DOE58_RS19710 PF06965 Na+/H+ antiporter 1 DOE58_RS19725 PF04055 Radical SAM superfamily DOE58_RS19725 PF13186 Iron-sulfur cluster-binding domain DOE58_RS19730 PF00884 Sulfatase DOE58_RS19730 PF16385 Domain of unknown function DOE58_RS19740 PF02872 5'-nucleotidase, C-terminal domain DOE58_RS19740 PF00149 Calcineurin-like phosphoesterase DOE58_RS19755 PF03466 LysR substrate binding domain DOE58_RS19755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS19775 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS19775 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE58_RS19780 PF16970 Type-1 fimbrial protein, A DOE58_RS19785 PF00419 Fimbrial protein DOE58_RS19790 PF00419 Fimbrial protein DOE58_RS19795 PF13953 PapC C-terminal domain DOE58_RS19795 PF00577 Outer membrane usher protein DOE58_RS19795 PF13954 PapC N-terminal domain DOE58_RS19800 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS19800 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE58_RS19805 PF00419 Fimbrial protein DOE58_RS19820 PF00704 Glycosyl hydrolases family 18 DOE58_RS19840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS19840 PF03466 LysR substrate binding domain DOE58_RS19845 PF00684 DnaJ central domain DOE58_RS19845 PF00226 DnaJ domain DOE58_RS19845 PF01556 DnaJ C terminal domain DOE58_RS19850 PF00012 Hsp70 protein DOE58_RS19855 PF10807 Protein of unknown function (DUF2541) DOE58_RS19860 PF13099 Domain of unknown function (DUF3944) DOE58_RS19860 PF03981 Ubiquinol-cytochrome C chaperone DOE58_RS19865 PF01184 GPR1/FUN34/yaaH family DOE58_RS19870 PF00994 Probable molybdopterin binding domain DOE58_RS19875 PF00923 Transaldolase/Fructose-6-phosphate aldolase DOE58_RS19880 PF01235 Sodium:alanine symporter family DOE58_RS19885 PF03883 Peroxide stress protein YaaA DOE58_RS19890 PF00291 Pyridoxal-phosphate dependent enzyme DOE58_RS19890 PF14821 Threonine synthase N terminus DOE58_RS19895 PF00288 GHMP kinases N terminal domain DOE58_RS19895 PF08544 GHMP kinases C terminal DOE58_RS19900 PF03447 Homoserine dehydrogenase, NAD binding domain DOE58_RS19900 PF00742 Homoserine dehydrogenase DOE58_RS19900 PF13840 ACT domain DOE58_RS19900 PF01842 ACT domain DOE58_RS19900 PF00696 Amino acid kinase family DOE58_RS19905 PF08254 Threonine leader peptide DOE58_RS19910 PF00588 SpoU rRNA Methylase family DOE58_RS19920 PF00072 Response regulator receiver domain DOE58_RS19920 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS19930 PF15977 Winged helix-turn-helix DNA binding DOE58_RS19940 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS19940 PF02753 Pili assembly chaperone PapD, C-terminal domain DOE58_RS19945 PF00577 Outer membrane usher protein DOE58_RS19945 PF13953 PapC C-terminal domain DOE58_RS19945 PF13954 PapC N-terminal domain DOE58_RS19960 PF06123 Inner membrane protein CreD DOE58_RS19965 PF00672 HAMP domain DOE58_RS19965 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS19965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS19970 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS19970 PF00072 Response regulator receiver domain DOE58_RS19975 PF05981 CreA protein DOE58_RS19980 PF12833 Helix-turn-helix domain DOE58_RS19980 PF06445 GyrI-like small molecule binding domain DOE58_RS19985 PF00300 Histidine phosphatase superfamily (branch 1) DOE58_RS19990 PF01931 Protein of unknown function DUF84 DOE58_RS20000 PF01371 Trp repressor protein DOE58_RS20005 PF14718 Soluble lytic murein transglycosylase L domain DOE58_RS20005 PF01464 Transglycosylase SLT domain DOE58_RS20015 PF00005 ABC transporter DOE58_RS20015 PF12848 ABC transporter DOE58_RS20020 PF01381 Helix-turn-helix DOE58_RS20020 PF13521 AAA domain DOE58_RS20025 PF18073 Rubredoxin metal binding domain DOE58_RS20030 PF18429 Domain of unknown function (DUF5609) DOE58_RS20040 PF10144 Bacterial virulence factor haemolysin DOE58_RS20045 PF10437 Bacterial lipoate protein ligase C-terminus DOE58_RS20045 PF03099 Biotin/lipoate A/B protein ligase family DOE58_RS20055 PF01048 Phosphorylase superfamily DOE58_RS20060 PF01676 Metalloenzyme superfamily DOE58_RS20065 PF00591 Glycosyl transferase family, a/b domain DOE58_RS20065 PF02885 Glycosyl transferase family, helical bundle domain DOE58_RS20065 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DOE58_RS20070 PF01791 DeoC/LacD family aldolase DOE58_RS20075 PF11230 Protein of unknown function (DUF3029) DOE58_RS20080 PF04055 Radical SAM superfamily DOE58_RS20085 PF01026 TatD related DNase DOE58_RS20090 PF01734 Patatin-like phospholipase DOE58_RS20095 PF07043 Protein of unknown function (DUF1328) DOE58_RS20100 PF04972 BON domain DOE58_RS20105 PF00009 Elongation factor Tu GTP binding domain DOE58_RS20105 PF16658 Class II release factor RF3, C-terminal domain DOE58_RS20105 PF03144 Elongation factor Tu domain 2 DOE58_RS20110 PF13419 Haloacid dehalogenase-like hydrolase DOE58_RS20115 PF00583 Acetyltransferase (GNAT) family DOE58_RS20120 PF03603 DNA polymerase III psi subunit DOE58_RS20125 PF05175 Methyltransferase small domain DOE58_RS20125 PF08468 Methyltransferase small domain N-terminal DOE58_RS20145 PF07256 Protein of unknown function (DUF1435) DOE58_RS20150 PF05230 MASE2 domain DOE58_RS20150 PF00990 Diguanylate cyclase, GGDEF domain DOE58_RS20155 PF11575 FhuF 2Fe-2S C-terminal domain DOE58_RS20155 PF06276 Ferric iron reductase FhuF-like transporter DOE58_RS20160 PF04073 Aminoacyl-tRNA editing domain DOE58_RS20165 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS20170 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS20175 PF06738 Putative threonine/serine exporter DOE58_RS20180 PF12821 Threonine/Serine exporter, ThrE DOE58_RS20185 PF17948 DnaT DNA-binding domain DOE58_RS20190 PF01695 IstB-like ATP binding protein DOE58_RS20195 PF10696 Protein of unknown function (DUF2501) DOE58_RS20200 PF00884 Sulfatase DOE58_RS20205 PF02203 Tar ligand binding domain homologue DOE58_RS20205 PF00672 HAMP domain DOE58_RS20205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE58_RS20210 PF13722 5TM C-terminal transporter carbon starvation CstA DOE58_RS20210 PF02554 Carbon starvation protein CstA DOE58_RS20215 PF04328 Selenoprotein, putative DOE58_RS20220 PF02492 CobW/HypB/UreG, nucleotide-binding domain DOE58_RS20220 PF07683 Cobalamin synthesis protein cobW C-terminal domain DOE58_RS20225 PF12833 Helix-turn-helix domain DOE58_RS20225 PF02311 AraC-like ligand binding domain DOE58_RS20250 PF00171 Aldehyde dehydrogenase family DOE58_RS20255 PF04754 Putative transposase, YhgA-like DOE58_RS20260 PF07690 Major Facilitator Superfamily DOE58_RS20265 PF04286 Protein of unknown function (DUF445) DOE58_RS20270 PF06779 Uncharacterised MFS-type transporter YbfB DOE58_RS20275 PF07670 Nucleoside recognition DOE58_RS20280 PF07670 Nucleoside recognition DOE58_RS20285 PF01979 Amidohydrolase family DOE58_RS20290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS20290 PF03466 LysR substrate binding domain DOE58_RS20295 PF01177 Asp/Glu/Hydantoin racemase DOE58_RS20310 PF00579 tRNA synthetases class I (W and Y) DOE58_RS20315 PF07729 FCD domain DOE58_RS20315 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS20325 PF01738 Dienelactone hydrolase family DOE58_RS20330 PF03625 Domain of unknown function DUF302 DOE58_RS20330 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DOE58_RS20355 PF09857 Putative toxin of bacterial toxin-antitoxin pair DOE58_RS20360 PF13847 Methyltransferase domain DOE58_RS20370 PF01709 Transcriptional regulator DOE58_RS20450 PF06755 CbtA_toxin of type IV toxin-antitoxin system DOE58_RS20455 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A DOE58_RS20460 PF04002 RadC-like JAB domain DOE58_RS20485 PF08220 DeoR-like helix-turn-helix domain DOE58_RS20485 PF13280 WYL domain DOE58_RS20530 PF00271 Helicase conserved C-terminal domain DOE58_RS20530 PF08463 EcoEI R protein C-terminal DOE58_RS20530 PF04851 Type III restriction enzyme, res subunit DOE58_RS20530 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DOE58_RS20535 PF02384 N-6 DNA Methylase DOE58_RS20535 PF12161 HsdM N-terminal domain DOE58_RS20565 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS20565 PF00107 Zinc-binding dehydrogenase DOE58_RS20570 PF01202 Shikimate kinase DOE58_RS20575 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS20575 PF00107 Zinc-binding dehydrogenase DOE58_RS20580 PF00106 short chain dehydrogenase DOE58_RS20585 PF02447 GntP family permease DOE58_RS20595 PF03739 Lipopolysaccharide export system permease LptF/LptG DOE58_RS20600 PF03739 Lipopolysaccharide export system permease LptF/LptG DOE58_RS20615 PF00883 Cytosol aminopeptidase family, catalytic domain DOE58_RS20615 PF02789 Cytosol aminopeptidase family, N-terminal domain DOE58_RS20620 PF04364 DNA polymerase III chi subunit, HolC DOE58_RS20625 PF10458 Valyl tRNA synthetase tRNA binding arm DOE58_RS20625 PF00133 tRNA synthetases class I (I, L, M and V) DOE58_RS20625 PF08264 Anticodon-binding domain of tRNA DOE58_RS20630 PF05987 Bacterial protein of unknown function (DUF898) DOE58_RS20635 PF00583 Acetyltransferase (GNAT) family DOE58_RS20640 PF12276 Protein of unknown function (DUF3617) DOE58_RS20645 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DOE58_RS20650 PF06877 Regulator of ribonuclease activity B DOE58_RS20655 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DOE58_RS20655 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DOE58_RS20660 PF04074 YhcH/YjgK/YiaL DOE58_RS20675 PF00696 Amino acid kinase family DOE58_RS20680 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DOE58_RS20680 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DOE58_RS20685 PF03606 C4-dicarboxylate anaerobic carrier DOE58_RS20690 PF02863 Arginine repressor, C-terminal domain DOE58_RS20690 PF01316 Arginine repressor, DNA binding domain DOE58_RS20700 PF08052 PyrBI operon leader peptide DOE58_RS20705 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DOE58_RS20705 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DOE58_RS20710 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DOE58_RS20710 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DOE58_RS20715 PF01042 Endoribonuclease L-PSP DOE58_RS20720 PF00690 Cation transporter/ATPase, N-terminus DOE58_RS20720 PF00689 Cation transporting ATPase, C-terminus DOE58_RS20725 PF17059 MgtA leader peptide DOE58_RS20730 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS20735 PF00367 phosphotransferase system, EIIB DOE58_RS20735 PF02378 Phosphotransferase system, EIIC DOE58_RS20740 PF00128 Alpha amylase, catalytic domain DOE58_RS20740 PF11941 Domain of unknown function (DUF3459) DOE58_RS20745 PF13597 Anaerobic ribonucleoside-triphosphate reductase DOE58_RS20745 PF03477 ATP cone domain DOE58_RS20755 PF05016 ParE toxin of type II toxin-antitoxin system, parDE DOE58_RS20760 PF04221 RelB antitoxin DOE58_RS20765 PF00874 PRD domain DOE58_RS20765 PF05043 Mga helix-turn-helix domain DOE58_RS20765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE58_RS20765 PF08279 HTH domain DOE58_RS20770 PF07071 KDGP aldolase DOE58_RS20775 PF03841 L-seryl-tRNA selenium transferase DOE58_RS20780 PF01979 Amidohydrolase family DOE58_RS20810 PF07361 Cytochrome b562 DOE58_RS20815 PF01523 Putative modulator of DNA gyrase DOE58_RS20820 PF04751 Protein of unknown function (DUF615) DOE58_RS20825 PF01225 Mur ligase family, catalytic domain DOE58_RS20825 PF08245 Mur ligase middle domain DOE58_RS20825 PF02875 Mur ligase family, glutamate ligase domain DOE58_RS20830 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DOE58_RS20835 PF00719 Inorganic pyrophosphatase DOE58_RS20840 PF01979 Amidohydrolase family DOE58_RS20845 PF07690 Major Facilitator Superfamily DOE58_RS20850 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like DOE58_RS20855 PF04357 TamB, inner membrane protein subunit of TAM complex DOE58_RS20860 PF17243 POTRA domain TamA domain 1 DOE58_RS20860 PF01103 Surface antigen DOE58_RS20860 PF07244 Surface antigen variable number repeat DOE58_RS20865 PF01625 Peptide methionine sulfoxide reductase DOE58_RS20870 PF03471 Transporter associated domain DOE58_RS20870 PF00571 CBS domain DOE58_RS20870 PF01595 Cyclin M transmembrane N-terminal domain DOE58_RS20875 PF06526 Protein of unknown function (DUF1107) DOE58_RS20885 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) DOE58_RS20890 PF00459 Inositol monophosphatase family DOE58_RS20900 PF02872 5'-nucleotidase, C-terminal domain DOE58_RS20900 PF00149 Calcineurin-like phosphoesterase DOE58_RS20905 PF01638 HxlR-like helix-turn-helix DOE58_RS20910 PF05368 NmrA-like family DOE58_RS20915 PF00892 EamA-like transporter family DOE58_RS20920 PF01814 Hemerythrin HHE cation binding domain DOE58_RS20920 PF04405 Domain of Unknown function (DUF542) DOE58_RS20925 PF00324 Amino acid permease DOE58_RS20930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOE58_RS20930 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DOE58_RS20940 PF08525 Opacity-associated protein A N-terminal motif DOE58_RS20940 PF04225 Opacity-associated protein A LysM-like domain DOE58_RS20950 PF01281 Ribosomal protein L9, N-terminal domain DOE58_RS20950 PF03948 Ribosomal protein L9, C-terminal domain DOE58_RS20955 PF01084 Ribosomal protein S18 DOE58_RS20960 PF00436 Single-strand binding protein family DOE58_RS20965 PF01250 Ribosomal protein S6 DOE58_RS20970 PF07338 Protein of unknown function (DUF1471) DOE58_RS20975 PF07274 Protein of unknown function (DUF1440) DOE58_RS20980 PF00596 Class II Aldolase and Adducin N-terminal domain DOE58_RS20985 PF01261 Xylose isomerase-like TIM barrel DOE58_RS20990 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DOE58_RS20995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE58_RS21000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE58_RS21005 PF03611 PTS system sugar-specific permease component DOE58_RS21015 PF00455 DeoR C terminal sensor domain DOE58_RS21015 PF08220 DeoR-like helix-turn-helix domain DOE58_RS21020 PF00326 Prolyl oligopeptidase family DOE58_RS21025 PF07338 Protein of unknown function (DUF1471) DOE58_RS21030 PF07338 Protein of unknown function (DUF1471) DOE58_RS21035 PF18158 Adaptive response protein AidB N-terminal domain DOE58_RS21035 PF02770 Acyl-CoA dehydrogenase, middle domain DOE58_RS21035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE58_RS21040 PF03738 Glutathionylspermidine synthase preATP-grasp DOE58_RS21045 PF06693 Protein of unknown function (DUF1190) DOE58_RS21050 PF03994 Domain of Unknown Function (DUF350) DOE58_RS21055 PF10679 Protein of unknown function (DUF2491) DOE58_RS21060 PF04012 PspA/IM30 family DOE58_RS21065 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) DOE58_RS21070 PF08032 RNA 2'-O ribose methyltransferase substrate binding DOE58_RS21070 PF00588 SpoU rRNA Methylase family DOE58_RS21075 PF08206 Ribonuclease B OB domain DOE58_RS21075 PF00575 S1 RNA binding domain DOE58_RS21075 PF00773 RNB domain DOE58_RS21075 PF17876 Cold shock domain DOE58_RS21075 PF08461 Ribonuclease R winged-helix domain DOE58_RS21080 PF02082 Transcriptional regulator DOE58_RS21090 PF00709 Adenylosuccinate synthetase DOE58_RS21095 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) DOE58_RS21100 PF01145 SPFH domain / Band 7 family DOE58_RS21105 PF01145 SPFH domain / Band 7 family DOE58_RS21105 PF12221 Bacterial membrane protein N terminal DOE58_RS21110 PF16360 GTP-binding GTPase Middle Region DOE58_RS21110 PF13167 GTP-binding GTPase N-terminal DOE58_RS21110 PF01926 50S ribosome-binding GTPase DOE58_RS21115 PF17209 Hfq protein DOE58_RS21125 PF08676 MutL C terminal dimerisation domain DOE58_RS21125 PF01119 DNA mismatch repair protein, C-terminal domain DOE58_RS21130 PF01520 N-acetylmuramoyl-L-alanine amidase DOE58_RS21135 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DOE58_RS21140 PF01256 Carbohydrate kinase DOE58_RS21140 PF03853 YjeF-related protein N-terminus DOE58_RS21145 PF08331 Domain of unknown function (DUF1730) DOE58_RS21165 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE58_RS21170 PF00929 Exonuclease DOE58_RS21175 PF03193 RsgA GTPase DOE58_RS21180 PF02666 Phosphatidylserine decarboxylase DOE58_RS21185 PF12794 Mechanosensitive ion channel inner membrane domain 1 DOE58_RS21185 PF12795 Mechanosensitive ion channel porin domain DOE58_RS21185 PF00924 Mechanosensitive ion channel DOE58_RS21195 PF13520 Amino acid permease DOE58_RS21200 PF00152 tRNA synthetases class II (D, K and N) DOE58_RS21205 PF02910 Fumarate reductase flavoprotein C-term DOE58_RS21205 PF00890 FAD binding domain DOE58_RS21210 PF13085 2Fe-2S iron-sulfur cluster binding domain DOE58_RS21210 PF13183 4Fe-4S dicluster domain DOE58_RS21215 PF02300 Fumarate reductase subunit C DOE58_RS21220 PF02313 Fumarate reductase subunit D DOE58_RS21225 PF08212 Lipocalin-like domain DOE58_RS21230 PF00893 Small Multidrug Resistance protein DOE58_RS21235 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS21240 PF08085 Entericidin EcnA/B family DOE58_RS21250 PF08085 Entericidin EcnA/B family DOE58_RS21255 PF08207 Elongation factor P (EF-P) KOW-like domain DOE58_RS21255 PF09285 Elongation factor P, C-terminal DOE58_RS21255 PF01132 Elongation factor P (EF-P) OB domain DOE58_RS21260 PF04055 Radical SAM superfamily DOE58_RS21265 PF15922 YjeJ-like DOE58_RS21270 PF13698 Domain of unknown function (DUF4156) DOE58_RS21275 PF00118 TCP-1/cpn60 chaperonin family DOE58_RS21280 PF00166 Chaperonin 10 Kd subunit DOE58_RS21285 PF13520 Amino acid permease DOE58_RS21290 PF04186 FxsA cytoplasmic membrane protein DOE58_RS21295 PF00206 Lyase DOE58_RS21295 PF10415 Fumarase C C-terminus DOE58_RS21300 PF03605 Anaerobic c4-dicarboxylate membrane transporter DOE58_RS21305 PF03091 CutA1 divalent ion tolerance protein DOE58_RS21310 PF11412 Disulphide bond corrector protein DsbC DOE58_RS21310 PF02683 Cytochrome C biogenesis protein transmembrane region DOE58_RS21330 PF01569 PAP2 superfamily DOE58_RS21335 PF06977 SdiA-regulated DOE58_RS21370 PF02432 Fimbrial, major and minor subunit DOE58_RS21380 PF17547 Family of unknown function (DUF5462) DOE58_RS21385 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DOE58_RS21390 PF00577 Outer membrane usher protein DOE58_RS21390 PF13954 PapC N-terminal domain DOE58_RS21400 PF03333 Adhesin biosynthesis transcription regulatory protein DOE58_RS21430 PF12833 Helix-turn-helix domain DOE58_RS21435 PF00072 Response regulator receiver domain DOE58_RS21435 PF00196 Bacterial regulatory proteins, luxR family DOE58_RS21440 PF00005 ABC transporter DOE58_RS21450 PF06977 SdiA-regulated DOE58_RS21460 PF02613 Nitrate reductase delta subunit DOE58_RS21465 PF04976 DMSO reductase anchor subunit (DmsC) DOE58_RS21470 PF12800 4Fe-4S binding domain DOE58_RS21470 PF13247 4Fe-4S dicluster domain DOE58_RS21475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS21475 PF00384 Molybdopterin oxidoreductase DOE58_RS21475 PF01568 Molydopterin dinucleotide binding domain DOE58_RS21480 PF00989 PAS fold DOE58_RS21480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS21480 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DOE58_RS21480 PF17203 Single cache domain 3 DOE58_RS21485 PF00072 Response regulator receiver domain DOE58_RS21495 PF03605 Anaerobic c4-dicarboxylate membrane transporter DOE58_RS21500 PF05683 Fumarase C-terminus DOE58_RS21500 PF05681 Fumarate hydratase (Fumerase) DOE58_RS21510 PF11975 Family 4 glycosyl hydrolase C-terminal domain DOE58_RS21510 PF02056 Family 4 glycosyl hydrolase DOE58_RS21515 PF12833 Helix-turn-helix domain DOE58_RS21520 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DOE58_RS21520 PF01276 Orn/Lys/Arg decarboxylase, major domain DOE58_RS21520 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DOE58_RS21525 PF12833 Helix-turn-helix domain DOE58_RS21530 PF13520 Amino acid permease DOE58_RS21535 PF08019 Phosphoethanolamine transferase EptA/EptB DOE58_RS21535 PF00884 Sulfatase DOE58_RS21540 PF00072 Response regulator receiver domain DOE58_RS21540 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS21545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS21545 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS21555 PF00083 Sugar (and other) transporter DOE58_RS21555 PF08946 Osmosensory transporter coiled coil DOE58_RS21560 PF08274 PhnA Zinc-Ribbon DOE58_RS21560 PF03831 PhnA domain DOE58_RS21565 PF06983 3-demethylubiquinone-9 3-methyltransferase DOE58_RS21570 PF00583 Acetyltransferase (GNAT) family DOE58_RS21585 PF08238 Sel1 repeat DOE58_RS21590 PF00375 Sodium:dicarboxylate symporter family DOE58_RS21600 PF03918 Cytochrome C biogenesis protein DOE58_RS21605 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DOE58_RS21605 PF01578 Cytochrome C assembly protein DOE58_RS21610 PF03916 Polysulphide reductase, NrfD DOE58_RS21615 PF13247 4Fe-4S dicluster domain DOE58_RS21615 PF00037 4Fe-4S binding domain DOE58_RS21620 PF13435 Cytochrome c554 and c-prime DOE58_RS21620 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) DOE58_RS21625 PF02335 Cytochrome c552 DOE58_RS21635 PF16177 Acetyl-coenzyme A synthetase N-terminus DOE58_RS21635 PF00501 AMP-binding enzyme DOE58_RS21635 PF13193 AMP-binding enzyme C-terminal domain DOE58_RS21645 PF04341 Protein of unknown function, DUF485 DOE58_RS21650 PF00474 Sodium:solute symporter family DOE58_RS21655 PF04172 LrgB-like family DOE58_RS21660 PF03788 LrgA family DOE58_RS21665 PF03466 LysR substrate binding domain DOE58_RS21665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS21670 PF00999 Sodium/hydrogen exchanger family DOE58_RS21680 PF00860 Permease family DOE58_RS21695 PF09278 MerR, DNA binding DOE58_RS21695 PF00376 MerR family regulatory protein DOE58_RS21700 PF12833 Helix-turn-helix domain DOE58_RS21705 PF00563 EAL domain DOE58_RS21705 PF12792 CSS motif domain associated with EAL DOE58_RS21710 PF15940 Family of unknown function DOE58_RS21720 PF01797 Transposase IS200 like DOE58_RS21730 PF00005 ABC transporter DOE58_RS21730 PF00664 ABC transporter transmembrane region DOE58_RS21765 PF00436 Single-strand binding protein family DOE58_RS21775 PF00005 ABC transporter DOE58_RS21775 PF17755 UvrA DNA-binding domain DOE58_RS21775 PF17760 UvrA interaction domain DOE58_RS21790 PF04237 YjbR DOE58_RS21795 PF01894 Uncharacterised protein family UPF0047 DOE58_RS21800 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DOE58_RS21810 PF00155 Aminotransferase class I and II DOE58_RS21815 PF01168 Alanine racemase, N-terminal domain DOE58_RS21815 PF00842 Alanine racemase, C-terminal domain DOE58_RS21820 PF00772 DnaB-like helicase N terminal domain DOE58_RS21820 PF03796 DnaB-like helicase C terminal domain DOE58_RS21825 PF08240 Alcohol dehydrogenase GroES-like domain DOE58_RS21825 PF00107 Zinc-binding dehydrogenase DOE58_RS21830 PF09583 Phage shock protein G (Phageshock_PspG) DOE58_RS21835 PF01207 Dihydrouridine synthase (Dus) DOE58_RS21845 PF01475 Ferric uptake regulator family DOE58_RS21850 PF05532 CsbD-like DOE58_RS21860 PF01554 MatE DOE58_RS21865 PF01726 LexA DNA binding domain DOE58_RS21865 PF00717 Peptidase S24-like DOE58_RS21870 PF01219 Prokaryotic diacylglycerol kinase DOE58_RS21875 PF01553 Acyltransferase DOE58_RS21880 PF01040 UbiA prenyltransferase family DOE58_RS21885 PF04345 Chorismate lyase DOE58_RS21890 PF07148 Maltose operon periplasmic protein precursor (MalM) DOE58_RS21895 PF02264 LamB porin DOE58_RS21900 PF17912 MalK OB fold domain DOE58_RS21900 PF00005 ABC transporter DOE58_RS21905 PF01547 Bacterial extracellular solute-binding protein DOE58_RS21910 PF14785 Maltose transport system permease protein MalF P2 domain DOE58_RS21910 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS21915 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS21920 PF00083 Sugar (and other) transporter DOE58_RS21925 PF06146 Phosphate-starvation-inducible E DOE58_RS21930 PF06082 Exopolysaccharide biosynthesis protein YbjH DOE58_RS21935 PF06251 Capsule biosynthesis GfcC DOE58_RS21940 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF DOE58_RS21950 PF00342 Phosphoglucose isomerase DOE58_RS21955 PF00696 Amino acid kinase family DOE58_RS21955 PF01842 ACT domain DOE58_RS21980 PF08220 DeoR-like helix-turn-helix domain DOE58_RS21980 PF00455 DeoR C terminal sensor domain DOE58_RS21990 PF11656 YjbD family (DUF3811) DOE58_RS21995 PF01479 S4 domain DOE58_RS21995 PF00849 RNA pseudouridylate synthase DOE58_RS22000 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) DOE58_RS22010 PF03575 Peptidase family S51 DOE58_RS22015 PF02690 Na+/Pi-cotransporter DOE58_RS22020 PF02574 Homocysteine S-methyltransferase DOE58_RS22020 PF00809 Pterin binding enzyme DOE58_RS22020 PF02965 Vitamin B12 dependent methionine synthase, activation domain DOE58_RS22020 PF02607 B12 binding domain DOE58_RS22020 PF02310 B12 binding domain DOE58_RS22025 PF01614 Bacterial transcriptional regulator DOE58_RS22025 PF09339 IclR helix-turn-helix domain DOE58_RS22035 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) DOE58_RS22040 PF00463 Isocitrate lyase family DOE58_RS22045 PF01274 Malate synthase DOE58_RS22050 PF04204 Homoserine O-succinyltransferase DOE58_RS22055 PF13673 Acetyltransferase (GNAT) domain DOE58_RS22080 PF01808 AICARFT/IMPCHase bienzyme DOE58_RS22080 PF02142 MGS-like domain DOE58_RS22085 PF02844 Phosphoribosylglycinamide synthetase, N domain DOE58_RS22085 PF02843 Phosphoribosylglycinamide synthetase, C domain DOE58_RS22085 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DOE58_RS22090 PF02954 Bacterial regulatory protein, Fis family DOE58_RS22090 PF00072 Response regulator receiver domain DOE58_RS22090 PF00158 Sigma-54 interaction domain DOE58_RS22095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS22095 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS22100 PF13801 Heavy-metal resistance DOE58_RS22105 PF07356 Protein of unknown function (DUF1481) DOE58_RS22110 PF00216 Bacterial DNA-binding protein DOE58_RS22115 PF04222 Protein of unknown function (DUF416) DOE58_RS22120 PF04493 Endonuclease V DOE58_RS22125 PF01208 Uroporphyrinogen decarboxylase (URO-D) DOE58_RS22130 PF00293 NUDIX domain DOE58_RS22130 PF09297 NADH pyrophosphatase zinc ribbon domain DOE58_RS22135 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DOE58_RS22140 PF01964 Radical SAM ThiC family DOE58_RS22140 PF13667 ThiC-associated domain DOE58_RS22145 PF02581 Thiamine monophosphate synthase DOE58_RS22150 PF00899 ThiF family DOE58_RS22155 PF02597 ThiS family DOE58_RS22160 PF05690 Thiazole biosynthesis protein ThiG DOE58_RS22165 PF04055 Radical SAM superfamily DOE58_RS22165 PF06968 Biotin and Thiamin Synthesis associated domain DOE58_RS22200 PF04997 RNA polymerase Rpb1, domain 1 DOE58_RS22200 PF04998 RNA polymerase Rpb1, domain 5 DOE58_RS22200 PF05000 RNA polymerase Rpb1, domain 4 DOE58_RS22200 PF04983 RNA polymerase Rpb1, domain 3 DOE58_RS22200 PF00623 RNA polymerase Rpb1, domain 2 DOE58_RS22205 PF00562 RNA polymerase Rpb2, domain 6 DOE58_RS22205 PF04563 RNA polymerase beta subunit DOE58_RS22205 PF04561 RNA polymerase Rpb2, domain 2 DOE58_RS22205 PF04565 RNA polymerase Rpb2, domain 3 DOE58_RS22205 PF04560 RNA polymerase Rpb2, domain 7 DOE58_RS22205 PF10385 RNA polymerase beta subunit external 1 domain DOE58_RS22210 PF00542 Ribosomal protein L7/L12 C-terminal domain DOE58_RS22210 PF16320 Ribosomal protein L7/L12 dimerisation domain DOE58_RS22215 PF00466 Ribosomal protein L10 DOE58_RS22225 PF00687 Ribosomal protein L1p/L10e family DOE58_RS22230 PF03946 Ribosomal protein L11, N-terminal domain DOE58_RS22230 PF00298 Ribosomal protein L11, RNA binding domain DOE58_RS22235 PF00467 KOW motif DOE58_RS22235 PF02357 Transcription termination factor nusG DOE58_RS22240 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DOE58_RS22245 PF03143 Elongation factor Tu C-terminal domain DOE58_RS22245 PF03144 Elongation factor Tu domain 2 DOE58_RS22245 PF00009 Elongation factor Tu GTP binding domain DOE58_RS22280 PF00485 Phosphoribulokinase / Uridine kinase family DOE58_RS22285 PF02237 Biotin protein ligase C terminal domain DOE58_RS22285 PF03099 Biotin/lipoate A/B protein ligase family DOE58_RS22285 PF08279 HTH domain DOE58_RS22290 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DOE58_RS22290 PF01565 FAD binding domain DOE58_RS22330 PF01177 Asp/Glu/Hydantoin racemase DOE58_RS22335 PF00593 TonB dependent receptor DOE58_RS22335 PF07715 TonB-dependent Receptor Plug Domain DOE58_RS22340 PF05958 tRNA (Uracil-5-)-methyltransferase DOE58_RS22345 PF07226 Protein of unknown function (DUF1422) DOE58_RS22350 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS22355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE58_RS22355 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE58_RS22360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS22360 PF03466 LysR substrate binding domain DOE58_RS22370 PF00206 Lyase DOE58_RS22370 PF14698 Argininosuccinate lyase C-terminal DOE58_RS22375 PF00696 Amino acid kinase family DOE58_RS22380 PF02774 Semialdehyde dehydrogenase, dimerisation domain DOE58_RS22380 PF01118 Semialdehyde dehydrogenase, NAD binding domain DOE58_RS22385 PF07687 Peptidase dimerisation domain DOE58_RS22385 PF01546 Peptidase family M20/M25/M40 DOE58_RS22395 PF00311 Phosphoenolpyruvate carboxylase DOE58_RS22400 PF00884 Sulfatase DOE58_RS22405 PF12833 Helix-turn-helix domain DOE58_RS22410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE58_RS22415 PF04055 Radical SAM superfamily DOE58_RS22420 PF01228 Glycine radical DOE58_RS22420 PF02901 Pyruvate formate lyase-like DOE58_RS22425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE58_RS22435 PF00381 PTS HPr component phosphorylation site DOE58_RS22435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE58_RS22435 PF02896 PEP-utilising enzyme, TIM barrel domain DOE58_RS22435 PF00391 PEP-utilising enzyme, mobile domain DOE58_RS22435 PF05524 PEP-utilising enzyme, N-terminal DOE58_RS22440 PF00923 Transaldolase/Fructose-6-phosphate aldolase DOE58_RS22445 PF00465 Iron-containing alcohol dehydrogenase DOE58_RS22450 PF00141 Peroxidase DOE58_RS22455 PF02219 Methylenetetrahydrofolate reductase DOE58_RS22460 PF02872 5'-nucleotidase, C-terminal domain DOE58_RS22460 PF17936 Bacterial Ig domain DOE58_RS22460 PF00149 Calcineurin-like phosphoesterase DOE58_RS22480 PF00696 Amino acid kinase family DOE58_RS22480 PF00742 Homoserine dehydrogenase DOE58_RS22480 PF03447 Homoserine dehydrogenase, NAD binding domain DOE58_RS22485 PF01053 Cys/Met metabolism PLP-dependent enzyme DOE58_RS22490 PF01340 Met Apo-repressor, MetJ DOE58_RS22495 PF17425 Arylsulfotransferase Ig-like domain DOE58_RS22495 PF05935 Arylsulfotransferase (ASST) DOE58_RS22505 PF01197 Ribosomal protein L31 DOE58_RS22510 PF17764 3′ DNA-binding domain (3′BD) DOE58_RS22510 PF00270 DEAD/DEAH box helicase DOE58_RS22510 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DOE58_RS22510 PF00271 Helicase conserved C-terminal domain DOE58_RS22510 PF18074 Primosomal protein N C-terminal domain DOE58_RS22515 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS22520 PF05036 Sporulation related domain DOE58_RS22525 PF00227 Proteasome subunit DOE58_RS22530 PF00004 ATPase family associated with various cellular activities (AAA) DOE58_RS22530 PF10431 C-terminal, D2-small domain, of ClpB protein DOE58_RS22530 PF07724 AAA domain (Cdc48 subfamily) DOE58_RS22535 PF01040 UbiA prenyltransferase family DOE58_RS22540 PF03737 Aldolase/RraA DOE58_RS22545 PF06005 Cell division protein ZapB DOE58_RS22550 PF00230 Major intrinsic protein DOE58_RS22555 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE58_RS22555 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE58_RS22560 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DOE58_RS22565 PF00175 Oxidoreductase NAD-binding domain DOE58_RS22565 PF00970 Oxidoreductase FAD-binding domain DOE58_RS22570 PF05656 Protein of unknown function (DUF805) DOE58_RS22575 PF07305 Protein of unknown function (DUF1454) DOE58_RS22580 PF00121 Triosephosphate isomerase DOE58_RS22585 PF00834 Ribulose-phosphate 3 epimerase family DOE58_RS22590 PF03992 Antibiotic biosynthesis monooxygenase DOE58_RS22595 PF01791 DeoC/LacD family aldolase DOE58_RS22600 PF13407 Periplasmic binding protein domain DOE58_RS22605 PF02653 Branched-chain amino acid transport system / permease component DOE58_RS22610 PF02653 Branched-chain amino acid transport system / permease component DOE58_RS22615 PF00005 ABC transporter DOE58_RS22620 PF04198 Putative sugar-binding domain DOE58_RS22625 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE58_RS22625 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE58_RS22635 PF02611 CDP-diacylglycerol pyrophosphatase DOE58_RS22645 PF00155 Aminotransferase class I and II DOE58_RS22645 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS22655 PF00294 pfkB family carbohydrate kinase DOE58_RS22665 PF02611 CDP-diacylglycerol pyrophosphatase DOE58_RS22675 PF00365 Phosphofructokinase DOE58_RS22680 PF01545 Cation efflux family DOE58_RS22680 PF16916 Dimerisation domain of Zinc Transporter DOE58_RS22700 PF02413 Caudovirales tail fibre assembly protein, lambda gpK DOE58_RS22705 PF03335 Phage tail fibre repeat DOE58_RS22705 PF07484 Phage Tail Collar Domain DOE58_RS22820 PF05840 Bacteriophage replication gene A protein (GPA) DOE58_RS22860 PF00589 Phage integrase family DOE58_RS22860 PF02899 Phage integrase, N-terminal SAM-like domain DOE58_RS22865 PF07813 LTXXQ motif family protein DOE58_RS22870 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS22870 PF00072 Response regulator receiver domain DOE58_RS22875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS22875 PF00672 HAMP domain DOE58_RS22875 PF16527 Two-component sensor protein CpxA, periplasmic domain DOE58_RS22875 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS22885 PF03475 3-alpha domain DOE58_RS22885 PF03473 MOSC domain DOE58_RS22890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DOE58_RS22890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DOE58_RS22895 PF03480 Bacterial extracellular solute-binding protein, family 7 DOE58_RS22900 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DOE58_RS22905 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DOE58_RS22910 PF06178 Oligogalacturonate-specific porin protein (KdgM) DOE58_RS22915 PF06379 L-rhamnose-proton symport protein (RhaT) DOE58_RS22920 PF12833 Helix-turn-helix domain DOE58_RS22920 PF02311 AraC-like ligand binding domain DOE58_RS22930 PF02311 AraC-like ligand binding domain DOE58_RS22930 PF12833 Helix-turn-helix domain DOE58_RS22935 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE58_RS22935 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE58_RS22940 PF06134 L-rhamnose isomerase (RhaA) DOE58_RS22945 PF00596 Class II Aldolase and Adducin N-terminal domain DOE58_RS22950 PF00465 Iron-containing alcohol dehydrogenase DOE58_RS22955 PF05336 L-rhamnose mutarotase DOE58_RS22965 PF03591 AzlC protein DOE58_RS22975 PF12889 Protein of unknown function (DUF3829) DOE58_RS22980 PF02634 FdhD/NarQ family DOE58_RS22985 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS22985 PF00384 Molybdopterin oxidoreductase DOE58_RS22985 PF01568 Molydopterin dinucleotide binding domain DOE58_RS22990 PF00384 Molybdopterin oxidoreductase DOE58_RS22990 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE58_RS22990 PF01568 Molydopterin dinucleotide binding domain DOE58_RS22995 PF13247 4Fe-4S dicluster domain DOE58_RS22995 PF09163 Formate dehydrogenase N, transmembrane DOE58_RS23000 PF01292 Prokaryotic cytochrome b561 DOE58_RS23005 PF04216 Protein involved in formate dehydrogenase formation DOE58_RS23015 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system DOE58_RS23020 PF07859 alpha/beta hydrolase fold DOE58_RS23025 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system DOE58_RS23030 PF01381 Helix-turn-helix DOE58_RS23035 PF00583 Acetyltransferase (GNAT) family DOE58_RS23035 PF09500 Putative thioesterase (yiiD_Cterm) DOE58_RS23040 PF02580 D-Tyr-tRNA(Tyr) deacylase DOE58_RS23045 PF03631 Virulence factor BrkB DOE58_RS23050 PF13419 Haloacid dehalogenase-like hydrolase DOE58_RS23055 PF08220 DeoR-like helix-turn-helix domain DOE58_RS23055 PF00455 DeoR C terminal sensor domain DOE58_RS23060 PF00294 pfkB family carbohydrate kinase DOE58_RS23065 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DOE58_RS23065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOE58_RS23070 PF01791 DeoC/LacD family aldolase DOE58_RS23080 PF01263 Aldose 1-epimerase DOE58_RS23085 PF01055 Glycosyl hydrolases family 31 DOE58_RS23100 PF06178 Oligogalacturonate-specific porin protein (KdgM) DOE58_RS23105 PF00009 Elongation factor Tu GTP binding domain DOE58_RS23105 PF03144 Elongation factor Tu domain 2 DOE58_RS23105 PF00679 Elongation factor G C-terminus DOE58_RS23115 PF03951 Glutamine synthetase, beta-Grasp domain DOE58_RS23115 PF00120 Glutamine synthetase, catalytic domain DOE58_RS23125 PF00989 PAS fold DOE58_RS23125 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS23125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS23130 PF00072 Response regulator receiver domain DOE58_RS23130 PF02954 Bacterial regulatory protein, Fis family DOE58_RS23130 PF00158 Sigma-54 interaction domain DOE58_RS23140 PF06969 HemN C-terminal domain DOE58_RS23140 PF04055 Radical SAM superfamily DOE58_RS23145 PF04220 Der GTPase activator (YihI) DOE58_RS23155 PF01926 50S ribosome-binding GTPase DOE58_RS23165 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DOE58_RS23165 PF00476 DNA polymerase family A DOE58_RS23165 PF01367 5'-3' exonuclease, C-terminal SAM fold DOE58_RS23165 PF01612 3'-5' exonuclease DOE58_RS23175 PF01553 Acyltransferase DOE58_RS23180 PF01323 DSBA-like thioredoxin domain DOE58_RS23185 PF01636 Phosphotransferase enzyme family DOE58_RS23190 PF06288 Protein of unknown function (DUF1040) DOE58_RS23195 PF12804 MobA-like NTP transferase domain DOE58_RS23200 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DOE58_RS23230 PF12724 Flavodoxin domain DOE58_RS23235 PF02386 Cation transport protein DOE58_RS23240 PF09186 Domain of unknown function (DUF1949) DOE58_RS23240 PF01205 Uncharacterized protein family UPF0029 DOE58_RS23245 PF00557 Metallopeptidase family M24 DOE58_RS23250 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DOE58_RS23250 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DOE58_RS23250 PF00378 Enoyl-CoA hydratase/isomerase DOE58_RS23255 PF00108 Thiolase, N-terminal domain DOE58_RS23255 PF02803 Thiolase, C-terminal domain DOE58_RS23260 PF17425 Arylsulfotransferase Ig-like domain DOE58_RS23260 PF05935 Arylsulfotransferase (ASST) DOE58_RS23265 PF00970 Oxidoreductase FAD-binding domain DOE58_RS23265 PF00175 Oxidoreductase NAD-binding domain DOE58_RS23270 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DOE58_RS23275 PF02357 Transcription termination factor nusG DOE58_RS23280 PF01026 TatD related DNase DOE58_RS23285 PF00902 Sec-independent protein translocase protein (TatC) DOE58_RS23295 PF02416 mttA/Hcf106 family DOE58_RS23300 PF03109 ABC1 family DOE58_RS23305 PF02036 SCP-2 sterol transfer family DOE58_RS23310 PF01209 ubiE/COQ5 methyltransferase family DOE58_RS23315 PF02646 RmuC family DOE58_RS23320 PF01048 Phosphorylase superfamily DOE58_RS23325 PF01738 Dienelactone hydrolase family DOE58_RS23330 PF04055 Radical SAM superfamily DOE58_RS23330 PF13186 Iron-sulfur cluster-binding domain DOE58_RS23335 PF08267 Cobalamin-independent synthase, N-terminal domain DOE58_RS23335 PF01717 Cobalamin-independent synthase, Catalytic domain DOE58_RS23340 PF03466 LysR substrate binding domain DOE58_RS23340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS23345 PF00892 EamA-like transporter family DOE58_RS23355 PF12146 Serine aminopeptidase, S33 DOE58_RS23360 PF01810 LysE type translocator DOE58_RS23365 PF01810 LysE type translocator DOE58_RS23370 PF16124 RecQ zinc-binding DOE58_RS23370 PF00570 HRDC domain DOE58_RS23370 PF00271 Helicase conserved C-terminal domain DOE58_RS23370 PF00270 DEAD/DEAH box helicase DOE58_RS23370 PF09382 RQC domain DOE58_RS23375 PF02253 Phospholipase A1 DOE58_RS23380 PF03061 Thioesterase superfamily DOE58_RS23385 PF00892 EamA-like transporter family DOE58_RS23400 PF01544 CorA-like Mg2+ transporter protein DOE58_RS23410 PF00580 UvrD/REP helicase N-terminal domain DOE58_RS23410 PF13361 UvrD-like helicase C-terminal domain DOE58_RS23415 PF13419 Haloacid dehalogenase-like hydrolase DOE58_RS23420 PF02899 Phage integrase, N-terminal SAM-like domain DOE58_RS23420 PF00589 Phage integrase family DOE58_RS23425 PF04340 Protein of unknown function, DUF484 DOE58_RS23430 PF01678 Diaminopimelate epimerase DOE58_RS23435 PF13627 Prokaryotic lipoprotein-attachment site DOE58_RS23450 PF01491 Frataxin-like domain DOE58_RS23455 PF01295 Adenylate cyclase, class-I DOE58_RS23455 PF12633 Adenylate cyclase NT domain DOE58_RS23460 PF03900 Porphobilinogen deaminase, C-terminal domain DOE58_RS23460 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DOE58_RS23465 PF02602 Uroporphyrinogen-III synthase HemD DOE58_RS23470 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase DOE58_RS23475 PF07719 Tetratricopeptide repeat DOE58_RS23475 PF07219 HemY protein N-terminus DOE58_RS23500 PF00324 Amino acid permease DOE58_RS23505 PF03808 Glycosyl transferase WecB/TagA/CpsF family DOE58_RS23510 PF06899 WzyE protein, O-antigen assembly polymerase DOE58_RS23515 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 DOE58_RS23520 PF01943 Polysaccharide biosynthesis protein DOE58_RS23525 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DOE58_RS23535 PF00483 Nucleotidyl transferase DOE58_RS23535 PF00483 Nucleotidyl transferase DOE58_RS23540 PF16363 GDP-mannose 4,6 dehydratase DOE58_RS23545 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOE58_RS23545 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOE58_RS23545 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DOE58_RS23550 PF02350 UDP-N-acetylglucosamine 2-epimerase DOE58_RS23555 PF02706 Chain length determinant protein DOE58_RS23560 PF00953 Glycosyl transferase family 4 DOE58_RS23565 PF07497 Rho termination factor, RNA-binding domain DOE58_RS23565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE58_RS23565 PF07498 Rho termination factor, N-terminal domain DOE58_RS23575 PF00085 Thioredoxin DOE58_RS23580 PF00270 DEAD/DEAH box helicase DOE58_RS23580 PF00271 Helicase conserved C-terminal domain DOE58_RS23590 PF02541 Ppx/GppA phosphatase family DOE58_RS23595 PF00580 UvrD/REP helicase N-terminal domain DOE58_RS23595 PF13361 UvrD-like helicase C-terminal domain DOE58_RS23615 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DOE58_RS23615 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DOE58_RS23620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS23620 PF03466 LysR substrate binding domain DOE58_RS23635 PF00291 Pyridoxal-phosphate dependent enzyme DOE58_RS23635 PF00585 C-terminal regulatory domain of Threonine dehydratase DOE58_RS23640 PF00920 Dehydratase family DOE58_RS23645 PF01063 Amino-transferase class IV DOE58_RS23655 PF00205 Thiamine pyrophosphate enzyme, central domain DOE58_RS23655 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE58_RS23655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE58_RS23660 PF08046 IlvGEDA operon leader peptide DOE58_RS23665 PF01078 Magnesium chelatase, subunit ChlI DOE58_RS23665 PF13335 Magnesium chelatase, subunit ChlI C-terminal DOE58_RS23670 PF04219 Protein of unknown function, DUF DOE58_RS23675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS23675 PF03466 LysR substrate binding domain DOE58_RS23710 PF00392 Bacterial regulatory proteins, gntR family DOE58_RS23710 PF07729 FCD domain DOE58_RS23715 PF07690 Major Facilitator Superfamily DOE58_RS23720 PF00356 Bacterial regulatory proteins, lacI family DOE58_RS23725 PF00294 pfkB family carbohydrate kinase DOE58_RS23730 PF13407 Periplasmic binding protein domain DOE58_RS23735 PF02653 Branched-chain amino acid transport system / permease component DOE58_RS23740 PF00005 ABC transporter DOE58_RS23745 PF05025 RbsD / FucU transport protein family DOE58_RS23750 PF02705 K+ potassium transporter DOE58_RS23755 PF12592 Protein of unknown function (DUF3763) DOE58_RS23755 PF17868 AAA lid domain DOE58_RS23755 PF07728 AAA domain (dynein-related subfamily) DOE58_RS23760 PF05762 VWA domain containing CoxE-like protein DOE58_RS23765 PF03590 Aspartate-ammonia ligase DOE58_RS23770 PF01037 Lrp/AsnC ligand binding domain DOE58_RS23775 PF00258 Flavodoxin DOE58_RS23785 PF01134 Glucose inhibited division protein A DOE58_RS23785 PF13932 GidA associated domain DOE58_RS23790 PF02527 rRNA small subunit methyltransferase G DOE58_RS23795 PF03899 ATP synthase I chain DOE58_RS23800 PF00119 ATP synthase A chain DOE58_RS23805 PF00137 ATP synthase subunit C DOE58_RS23810 PF00430 ATP synthase B/B' CF(0) DOE58_RS23815 PF00213 ATP synthase delta (OSCP) subunit DOE58_RS23820 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOE58_RS23820 PF00306 ATP synthase alpha/beta chain, C terminal domain DOE58_RS23820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE58_RS23825 PF00231 ATP synthase DOE58_RS23830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE58_RS23830 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOE58_RS23835 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DOE58_RS23835 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DOE58_RS23850 PF12804 MobA-like NTP transferase domain DOE58_RS23850 PF00132 Bacterial transferase hexapeptide (six repeats) DOE58_RS23855 PF01380 SIS domain DOE58_RS23860 PF12793 Sugar transport-related sRNA regulator N-term DOE58_RS23860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE58_RS23865 PF08501 Shikimate dehydrogenase substrate binding domain DOE58_RS23870 PF02378 Phosphotransferase system, EIIC DOE58_RS23870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE58_RS23875 PF12849 PBP superfamily domain DOE58_RS23880 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS23885 PF00528 Binding-protein-dependent transport system inner membrane component DOE58_RS23890 PF00005 ABC transporter DOE58_RS23895 PF01895 PhoU domain DOE58_RS23900 PF13419 Haloacid dehalogenase-like hydrolase DOE58_RS23905 PF00860 Permease family DOE58_RS23910 PF03358 NADPH-dependent FMN reductase DOE58_RS23920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE58_RS23920 PF03466 LysR substrate binding domain DOE58_RS23925 PF07690 Major Facilitator Superfamily DOE58_RS23930 PF10396 GTP-binding protein TrmE N-terminus DOE58_RS23930 PF12631 MnmE helical domain DOE58_RS23930 PF01926 50S ribosome-binding GTPase DOE58_RS23935 PF02096 60Kd inner membrane protein DOE58_RS23935 PF14849 YidC periplasmic domain DOE58_RS23940 PF01809 Putative membrane protein insertion efficiency factor DOE58_RS23945 PF00825 Ribonuclease P DOE58_RS23950 PF00468 Ribosomal protein L34 DOE58_RS23960 PF02387 IncFII RepA protein family DOE58_RS23990 PF00005 ABC transporter DOE58_RS24005 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH DOE58_RS24020 PF00672 HAMP domain DOE58_RS24020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS24020 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS24025 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS24025 PF00072 Response regulator receiver domain DOE58_RS24045 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS24050 PF07690 Major Facilitator Superfamily DOE58_RS24055 PF02909 Tetracyclin repressor-like, C-terminal domain DOE58_RS24055 PF00440 Bacterial regulatory proteins, tetR family DOE58_RS24080 PF01551 Peptidase family M23 DOE58_RS24080 PF08525 Opacity-associated protein A N-terminal motif DOE58_RS24080 PF01476 LysM domain DOE58_RS24090 PF04945 YHS domain DOE58_RS24100 PF00873 AcrB/AcrD/AcrF family DOE58_RS24105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DOE58_RS24110 PF11604 Copper binding periplasmic protein CusF DOE58_RS24115 PF02321 Outer membrane efflux protein DOE58_RS24125 PF00072 Response regulator receiver domain DOE58_RS24125 PF00486 Transcriptional regulatory protein, C terminal DOE58_RS24130 PF00512 His Kinase A (phospho-acceptor) domain DOE58_RS24130 PF00672 HAMP domain DOE58_RS24130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE58_RS24150 PF00990 Diguanylate cyclase, GGDEF domain DOE58_RS24170 PF00589 Phage integrase family DOE58_RS24185 PF06406 StbA protein DOE58_RS24195 PF11799 impB/mucB/samB family C-terminal domain DOE58_RS24195 PF00817 impB/mucB/samB family DOE58_RS24195 PF13438 Domain of unknown function (DUF4113) DOE58_RS24200 PF00717 Peptidase S24-like DOE58_RS24205 PF06183 DinI-like family DOE58_RS24215 PF06924 Protein of unknown function (DUF1281) DOE58_RS24225 PF01555 DNA methylase DOE58_RS24235 PF07128 Protein of unknown function (DUF1380) DOE58_RS24250 PF03230 Antirestriction protein DOE58_RS24255 PF07128 Protein of unknown function (DUF1380) DOE58_RS24280 PF00436 Single-strand binding protein family DOE58_RS24285 PF06006 Bacterial protein of unknown function (DUF905) DOE58_RS24290 PF02195 ParB-like nuclease domain DOE58_RS24295 PF06290 Plasmid SOS inhibition protein (PsiB) DOE58_RS24300 PF06952 PsiA protein DOE58_RS24305 PF12323 Helix-turn-helix domain DOE58_RS24310 PF07339 Protein of unknown function (DUF1472) DOE58_RS24340 PF04754 Putative transposase, YhgA-like DOE58_RS24380 PF03432 Relaxase/Mobilisation nuclease domain DOE58_RS24380 PF18821 Large polyvalent protein-associated domain 7 DOE58_RS24410 PF14282 FlxA-like protein DOE58_RS24420 PF04221 RelB antitoxin DOE58_RS24425 PF05016 ParE toxin of type II toxin-antitoxin system, parDE DOE58_RS24430 PF01848 Hok/gef family DOE58_RS24455 PF07282 Putative transposase DNA-binding domain DOE58_RS24455 PF01385 Probable transposase DOE58_RS24455 PF12323 Helix-turn-helix domain DOE58_RS24560 PF00437 Type II/IV secretion system protein DOE58_RS24575 PF00300 Histidine phosphatase superfamily (branch 1) DOE58_RS24590 PF00589 Phage integrase family DOE58_RS24595 PF04917 Bacterial shufflon protein, N-terminal constant region DOE58_RS24600 PF04917 Bacterial shufflon protein, N-terminal constant region DOE58_RS24610 PF01464 Transglycosylase SLT domain DOE58_RS24625 PF00437 Type II/IV secretion system protein DOE58_RS24640 PF00263 Bacterial type II and III secretion system protein DOE58_RS24640 PF07655 Secretin N-terminal domain DOE58_RS24710 PF03432 Relaxase/Mobilisation nuclease domain DOE58_RS24740 PF01815 Rop protein DOE58_RS24745 PF05713 Bacterial mobilisation protein (MobC)