AU29_RS00040	SM00852	Probable molybdopterin binding domain
AU29_RS00065	SM00271	DnaJ molecular chaperone homology domain
AU29_RS00090	SM00495	Chitin-binding domain type 3
AU29_RS00090	SM00636	AU29_RS00090
AU29_RS00150	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS00230	SM00904	Riboflavin kinase
AU29_RS00270	SM00448	cheY-homologous receiver domain
AU29_RS00275	SM00091	PAS domain
AU29_RS00275	SM00387	Histidine kinase-like ATPases
AU29_RS00300	SM00764	Citrate lyase ligase C-terminal domain
AU29_RS00335	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AU29_RS00340	SM00851	MGS-like domain
AU29_RS00340	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AU29_RS00385	SM00893	Electron transfer flavoprotein domain
AU29_RS00390	SM00893	Electron transfer flavoprotein domain
AU29_RS00465	SM00650	Ribosomal RNA adenine dimethylases
AU29_RS00485	SM00271	DnaJ molecular chaperone homology domain
AU29_RS00495	SM00487	DEAD-like helicases superfamily
AU29_RS00495	SM00490	helicase superfamily c-terminal domain
AU29_RS00500	SM00486	DNA polymerase type-B family
AU29_RS00515	SM01007	Class II Aldolase and Adducin N-terminal domain
AU29_RS00530	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS00540	SM00382	ATPases associated with a variety of cellular activities
AU29_RS00580	SM01329	AU29_RS00580
AU29_RS00585	SM00917	LeuA allosteric (dimerisation) domain
AU29_RS00610	SM00354	helix_turn _helix lactose operon repressor
AU29_RS00680	SM00842	Cell division protein FtsA
AU29_RS00685	SM00864	Tubulin/FtsZ family, GTPase domain
AU29_RS00685	SM00865	Tubulin/FtsZ family, C-terminal domain
AU29_RS00700	SM00957	SecA DEAD-like domain
AU29_RS00700	SM00958	SecA preprotein cross-linking domain
AU29_RS00735	SM01240	AU29_RS00735
AU29_RS00760	SM00644	AU29_RS00760
AU29_RS00785	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS00785	SM00895	AU29_RS00785
AU29_RS00830	SM00226	Low molecular weight phosphatase family
AU29_RS00855	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS00855	SM01134	AU29_RS00855
AU29_RS00880	SM00564	beta-propeller repeat
AU29_RS00890	SM00947	Carbonic anhydrase
AU29_RS00895	SM00382	ATPases associated with a variety of cellular activities
AU29_RS00980	SM00487	DEAD-like helicases superfamily
AU29_RS00980	SM00490	helicase superfamily c-terminal domain
AU29_RS00980	SM00847	Helicase associated domain (HA2)  Add an annotation
AU29_RS00995	SM00382	ATPases associated with a variety of cellular activities
AU29_RS01075	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AU29_RS01080	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AU29_RS01090	SM01276	AU29_RS01090
AU29_RS01110	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AU29_RS01155	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AU29_RS01165	SM00935	Outer membrane protein (OmpH-like)
AU29_RS01195	SM00481	DNA polymerase alpha chain like domain
AU29_RS01205	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
AU29_RS01220	SM00977	TilS substrate C-terminal domain
AU29_RS01235	SM01322	AU29_RS01235
AU29_RS01275	SM00382	ATPases associated with a variety of cellular activities
AU29_RS01275	SM00930	AU29_RS01275
AU29_RS01340	SM00257	Lysin motif
AU29_RS01345	SM00849	Metallo-beta-lactamase superfamily
AU29_RS01360	SM00479	AU29_RS01360
AU29_RS01550	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AU29_RS01660	SM00052	Putative diguanylate phosphodiesterase
AU29_RS01715	SM00422	helix_turn_helix, mercury resistance
AU29_RS01765	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS01785	SM00382	ATPases associated with a variety of cellular activities
AU29_RS01810	SM01004	Delta-aminolevulinic acid dehydratase
AU29_RS01815	SM00869	Autotransporter beta-domain
AU29_RS01875	SM00267	diguanylate cyclase
AU29_RS01940	SM00448	cheY-homologous receiver domain
AU29_RS01940	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS01945	SM00091	PAS domain
AU29_RS01945	SM00387	Histidine kinase-like ATPases
AU29_RS01945	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS01960	SM00642	Alpha-amylase domain
AU29_RS01985	SM01323	AU29_RS01985
AU29_RS02010	SM00507	HNH nucleases
AU29_RS02065	SM00861	Transketolase, pyrimidine binding domain
AU29_RS02080	SM00981	AU29_RS02080
AU29_RS02095	SM00382	ATPases associated with a variety of cellular activities
AU29_RS02105	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS02105	SM00866	AU29_RS02105
AU29_RS02140	SM00671	Sel1-like repeats.
AU29_RS02145	SM00671	Sel1-like repeats.
AU29_RS02200	SM00382	ATPases associated with a variety of cellular activities
AU29_RS02200	SM00994	ClpX C4-type zinc finger
AU29_RS02200	SM01086	C-terminal, D2-small domain, of ClpB protein
AU29_RS02205	SM00382	ATPases associated with a variety of cellular activities
AU29_RS02205	SM00464	Found in ATP-dependent protease La (LON)
AU29_RS02210	SM00411	bacterial (prokaryotic) histone like domain
AU29_RS02250	SM00344	helix_turn_helix ASNC type
AU29_RS02255	SM00382	ATPases associated with a variety of cellular activities
AU29_RS02260	SM00382	ATPases associated with a variety of cellular activities
AU29_RS02265	SM00938	Nitrogen regulatory protein P-II
AU29_RS02290	SM00052	Putative diguanylate phosphodiesterase
AU29_RS02310	SM01266	AU29_RS02310
AU29_RS02370	SM00382	ATPases associated with a variety of cellular activities
AU29_RS02380	SM00493	AU29_RS02380
AU29_RS02385	SM00387	Histidine kinase-like ATPases
AU29_RS02445	SM00422	helix_turn_helix, mercury resistance
AU29_RS02455	SM00244	prohibitin homologues
AU29_RS02460	SM00382	ATPases associated with a variety of cellular activities
AU29_RS02475	SM00822	AU29_RS02475
AU29_RS02485	SM00382	ATPases associated with a variety of cellular activities
AU29_RS02505	SM00382	ATPases associated with a variety of cellular activities
AU29_RS02505	SM00930	AU29_RS02505
AU29_RS02515	SM00450	Rhodanese Homology Domain
AU29_RS02530	SM00346	helix_turn_helix isocitrate lyase regulation
AU29_RS02615	SM01001	AIR carboxylase
AU29_RS02630	SM00840	AU29_RS02630
AU29_RS02690	SM00421	helix_turn_helix, Lux Regulon
AU29_RS02690	SM00448	cheY-homologous receiver domain
AU29_RS02705	SM00421	helix_turn_helix, Lux Regulon
AU29_RS02740	SM00387	Histidine kinase-like ATPases
AU29_RS02750	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS02785	SM00869	Autotransporter beta-domain
AU29_RS02805	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS02835	SM00923	MbtH-like protein
AU29_RS02840	SM00824	Thioesterase
AU29_RS02850	SM00382	ATPases associated with a variety of cellular activities
AU29_RS02890	SM00822	AU29_RS02890
AU29_RS02920	SM00470	ParB-like nuclease domain
AU29_RS02955	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS03020	SM00764	Citrate lyase ligase C-terminal domain
AU29_RS03025	SM00091	PAS domain
AU29_RS03025	SM00387	Histidine kinase-like ATPases
AU29_RS03030	SM00448	cheY-homologous receiver domain
AU29_RS03045	SM00357	Cold shock protein domain
AU29_RS03065	SM00729	Elongator protein 3, MiaB family, Radical SAM
AU29_RS03085	SM00936	Penicillin-binding protein 5, C-terminal domain 
AU29_RS03120	SM00855	Phosphoglycerate mutase family
AU29_RS03150	SM00858	AU29_RS03150
AU29_RS03165	SM00382	ATPases associated with a variety of cellular activities
AU29_RS03175	SM00671	Sel1-like repeats.
AU29_RS03185	SM00271	DnaJ molecular chaperone homology domain
AU29_RS03215	SM00382	ATPases associated with a variety of cellular activities
AU29_RS03230	SM00062	Bacterial periplasmic substrate-binding proteins
AU29_RS03240	SM00116	Domain in cystathionine beta-synthase and other proteins.
AU29_RS03240	SM01091	Transporter associated domain
AU29_RS03255	SM00729	Elongator protein 3, MiaB family, Radical SAM
AU29_RS03420	SM00448	cheY-homologous receiver domain
AU29_RS03420	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS03425	SM00387	Histidine kinase-like ATPases
AU29_RS03425	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS03470	SM00796	Allophanate hydrolase subunit 1
AU29_RS03475	SM00797	Allophanate hydrolase subunit 2
AU29_RS03485	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AU29_RS03485	SM01232	AU29_RS03485
AU29_RS03525	SM00861	Transketolase, pyrimidine binding domain
AU29_RS03540	SM00881	CoA binding domain
AU29_RS03715	SM00382	ATPases associated with a variety of cellular activities
AU29_RS03720	SM00855	Phosphoglycerate mutase family
AU29_RS03750	SM00382	ATPases associated with a variety of cellular activities
AU29_RS03775	SM00382	ATPases associated with a variety of cellular activities
AU29_RS03805	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS03805	SM00866	AU29_RS03805
AU29_RS03830	SM00729	Elongator protein 3, MiaB family, Radical SAM
AU29_RS03830	SM00876	Biotin and Thiamin Synthesis associated domain
AU29_RS03850	SM00487	DEAD-like helicases superfamily
AU29_RS03850	SM00490	helicase superfamily c-terminal domain
AU29_RS03870	SM00729	Elongator protein 3, MiaB family, Radical SAM
AU29_RS03875	SM00852	Probable molybdopterin binding domain
AU29_RS03920	SM00155	Phospholipase D. Active site motifs.
AU29_RS03945	SM00382	ATPases associated with a variety of cellular activities
AU29_RS03960	SM00487	DEAD-like helicases superfamily
AU29_RS03960	SM00490	helicase superfamily c-terminal domain
AU29_RS03965	SM00487	DEAD-like helicases superfamily
AU29_RS03965	SM00488	AU29_RS03965
AU29_RS03965	SM00491	AU29_RS03965
AU29_RS04000	SM00382	ATPases associated with a variety of cellular activities
AU29_RS04010	SM00062	Bacterial periplasmic substrate-binding proteins
AU29_RS04010	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AU29_RS04035	SM00529	Helix-turn-helix diphteria tox regulatory element
AU29_RS04050	SM00382	ATPases associated with a variety of cellular activities
AU29_RS04090	SM00852	Probable molybdopterin binding domain
AU29_RS04100	SM00382	ATPases associated with a variety of cellular activities
AU29_RS04120	SM00729	Elongator protein 3, MiaB family, Radical SAM
AU29_RS04135	SM00893	Electron transfer flavoprotein domain
AU29_RS04140	SM00893	Electron transfer flavoprotein domain
AU29_RS04185	SM00936	Penicillin-binding protein 5, C-terminal domain 
AU29_RS04190	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS04190	SM01134	AU29_RS04190
AU29_RS04195	SM00014	Acid phosphatase homologues
AU29_RS04260	SM00382	ATPases associated with a variety of cellular activities
AU29_RS04300	SM00062	Bacterial periplasmic substrate-binding proteins
AU29_RS04300	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AU29_RS04315	SM00062	Bacterial periplasmic substrate-binding proteins
AU29_RS04315	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AU29_RS04320	SM00382	ATPases associated with a variety of cellular activities
AU29_RS04335	SM00644	AU29_RS04335
AU29_RS04390	SM00382	ATPases associated with a variety of cellular activities
AU29_RS04395	SM00357	Cold shock protein domain
AU29_RS04405	SM00382	ATPases associated with a variety of cellular activities
AU29_RS04405	SM01086	C-terminal, D2-small domain, of ClpB protein
AU29_RS04445	SM00316	Ribosomal protein S1-like RNA-binding domain
AU29_RS04460	SM00382	ATPases associated with a variety of cellular activities
AU29_RS04465	SM00382	ATPases associated with a variety of cellular activities
AU29_RS04475	SM00344	helix_turn_helix ASNC type
AU29_RS04480	SM00843	AU29_RS04480
AU29_RS04490	SM00382	ATPases associated with a variety of cellular activities
AU29_RS04500	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS04580	SM00316	Ribosomal protein S1-like RNA-binding domain
AU29_RS04585	SM00411	bacterial (prokaryotic) histone like domain
AU29_RS04590	SM00849	Metallo-beta-lactamase superfamily
AU29_RS04595	SM00382	ATPases associated with a variety of cellular activities
AU29_RS04660	SM00849	Metallo-beta-lactamase superfamily
AU29_RS04680	SM00344	helix_turn_helix ASNC type
AU29_RS04775	SM00981	AU29_RS04775
AU29_RS04780	SM00382	ATPases associated with a variety of cellular activities
AU29_RS04850	SM00851	MGS-like domain
AU29_RS04860	SM00881	CoA binding domain
AU29_RS04865	SM00992	Hemimethylated DNA-binding protein YccV like
AU29_RS04870	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AU29_RS04880	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS04950	SM00387	Histidine kinase-like ATPases
AU29_RS04950	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS04955	SM00448	cheY-homologous receiver domain
AU29_RS04955	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS04960	SM00095	Transthyretin
AU29_RS04965	SM00903	Flavin reductase like domain
AU29_RS04975	SM00347	helix_turn_helix multiple antibiotic resistance protein
AU29_RS05015	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS05020	SM00849	Metallo-beta-lactamase superfamily
AU29_RS05035	SM00271	DnaJ molecular chaperone homology domain
AU29_RS05175	SM00257	Lysin motif
AU29_RS05210	SM00671	Sel1-like repeats.
AU29_RS05215	SM00671	Sel1-like repeats.
AU29_RS05245	SM00357	Cold shock protein domain
AU29_RS05260	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AU29_RS05290	SM00267	diguanylate cyclase
AU29_RS05310	SM00421	helix_turn_helix, Lux Regulon
AU29_RS05360	SM00382	ATPases associated with a variety of cellular activities
AU29_RS05405	SM00642	Alpha-amylase domain
AU29_RS05450	SM00062	Bacterial periplasmic substrate-binding proteins
AU29_RS05450	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AU29_RS05465	SM00382	ATPases associated with a variety of cellular activities
AU29_RS05470	SM00421	helix_turn_helix, Lux Regulon
AU29_RS05485	SM00421	helix_turn_helix, Lux Regulon
AU29_RS05485	SM00448	cheY-homologous receiver domain
AU29_RS05490	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AU29_RS05490	SM00465	GIY-YIG type nucleases (URI domain)
AU29_RS05615	SM00073	Histidine Phosphotransfer domain
AU29_RS05615	SM00260	Two component signalling adaptor domain
AU29_RS05615	SM00387	Histidine kinase-like ATPases
AU29_RS05615	SM01231	AU29_RS05615
AU29_RS05620	SM00260	Two component signalling adaptor domain
AU29_RS05625	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AU29_RS05625	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS05625	SM00319	Homologues of the ligand binding domain of Tar
AU29_RS05630	SM00138	Methyltransferase, chemotaxis proteins 
AU29_RS05635	SM00448	cheY-homologous receiver domain
AU29_RS05640	SM00448	cheY-homologous receiver domain
AU29_RS05675	SM00836	DALR anticodon binding domain
AU29_RS05675	SM01016	Arginyl tRNA synthetase N terminal dom
AU29_RS05745	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AU29_RS05750	SM00382	ATPases associated with a variety of cellular activities
AU29_RS05760	SM00382	ATPases associated with a variety of cellular activities
AU29_RS05770	SM00257	Lysin motif
AU29_RS05830	SM00479	AU29_RS05830
AU29_RS05875	SM00849	Metallo-beta-lactamase superfamily
AU29_RS06040	SM00506	Appr-1"-p processing enzyme
AU29_RS06155	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AU29_RS06160	SM00945	ProQ/FINO family
AU29_RS06165	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AU29_RS06165	SM00245	tail specific protease
AU29_RS06180	SM00346	helix_turn_helix isocitrate lyase regulation
AU29_RS06205	SM00357	Cold shock protein domain
AU29_RS06250	SM01091	Transporter associated domain
AU29_RS06255	SM00052	Putative diguanylate phosphodiesterase
AU29_RS06285	SM00487	DEAD-like helicases superfamily
AU29_RS06285	SM00491	AU29_RS06285
AU29_RS06305	SM00341	Helicase and RNase D C-terminal
AU29_RS06305	SM00474	3'-5' exonuclease
AU29_RS06365	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS06380	SM01005	Alanine racemase, C-terminal domain
AU29_RS06385	SM01091	Transporter associated domain
AU29_RS06415	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AU29_RS06495	SM01400	AU29_RS06495
AU29_RS06515	SM00937	AU29_RS06515
AU29_RS06560	SM00421	helix_turn_helix, Lux Regulon
AU29_RS06560	SM00448	cheY-homologous receiver domain
AU29_RS06565	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS06565	SM00387	Histidine kinase-like ATPases
AU29_RS06575	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS06595	SM00671	Sel1-like repeats.
AU29_RS06630	SM00448	cheY-homologous receiver domain
AU29_RS06640	SM00528	Domain in histone-like proteins of HNS family
AU29_RS06675	SM00382	ATPases associated with a variety of cellular activities
AU29_RS06680	SM00382	ATPases associated with a variety of cellular activities
AU29_RS06695	SM00155	Phospholipase D. Active site motifs.
AU29_RS06780	SM00481	DNA polymerase alpha chain like domain
AU29_RS06790	SM00363	S4 RNA-binding domain
AU29_RS06800	SM00822	AU29_RS06800
AU29_RS06815	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AU29_RS06815	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AU29_RS06815	SM00493	AU29_RS06815
AU29_RS06840	SM00014	Acid phosphatase homologues
AU29_RS06850	SM00028	Tetratricopeptide repeats
AU29_RS06855	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AU29_RS06870	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS06870	SM01134	AU29_RS06870
AU29_RS06880	SM00052	Putative diguanylate phosphodiesterase
AU29_RS06880	SM00091	PAS domain
AU29_RS06880	SM00267	diguanylate cyclase
AU29_RS06885	SM00357	Cold shock protein domain
AU29_RS06885	SM00955	AU29_RS06885
AU29_RS06920	SM00382	ATPases associated with a variety of cellular activities
AU29_RS06925	SM00382	ATPases associated with a variety of cellular activities
AU29_RS06945	SM00382	ATPases associated with a variety of cellular activities
AU29_RS06970	SM00450	Rhodanese Homology Domain
AU29_RS06985	SM00091	PAS domain
AU29_RS06985	SM00382	ATPases associated with a variety of cellular activities
AU29_RS06995	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AU29_RS07025	SM00822	AU29_RS07025
AU29_RS07045	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS07045	SM00871	Bacterial transcription activator, effector binding domain
AU29_RS07080	SM00873	B3/4 domain
AU29_RS07085	SM00530	Helix-turn-helix XRE-family like proteins 
AU29_RS07105	SM00100	Cyclic nucleotide-monophosphate binding domain
AU29_RS07105	SM00419	helix_turn_helix, cAMP Regulatory protein
AU29_RS07115	SM00463	Small MutS-related domain
AU29_RS07120	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AU29_RS07130	SM00487	DEAD-like helicases superfamily
AU29_RS07130	SM00490	helicase superfamily c-terminal domain
AU29_RS07170	SM00530	Helix-turn-helix XRE-family like proteins 
AU29_RS07255	SM00890	Domain of unknown function
AU29_RS07305	SM00382	ATPases associated with a variety of cellular activities
AU29_RS07305	SM00487	DEAD-like helicases superfamily
AU29_RS07305	SM00490	helicase superfamily c-terminal domain
AU29_RS07305	SM00847	Helicase associated domain (HA2)  Add an annotation
AU29_RS07340	SM00382	ATPases associated with a variety of cellular activities
AU29_RS07350	SM00062	Bacterial periplasmic substrate-binding proteins
AU29_RS07375	SM00829	Enoylreductase
AU29_RS07380	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AU29_RS07380	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS07380	SM00319	Homologues of the ligand binding domain of Tar
AU29_RS07390	SM01150	AU29_RS07390
AU29_RS07405	SM00867	YceI-like domain 
AU29_RS07410	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS07410	SM00895	AU29_RS07410
AU29_RS07430	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AU29_RS07440	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS07440	SM01134	AU29_RS07440
AU29_RS07505	SM00530	Helix-turn-helix XRE-family like proteins 
AU29_RS07540	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS07585	SM00829	Enoylreductase
AU29_RS07590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS07590	SM00895	AU29_RS07590
AU29_RS07645	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS07680	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS07700	SM00829	Enoylreductase
AU29_RS07705	SM00919	Malic enzyme, NAD binding domain
AU29_RS07705	SM01274	AU29_RS07705
AU29_RS07735	SM00642	Alpha-amylase domain
AU29_RS07740	SM00642	Alpha-amylase domain
AU29_RS07745	SM00642	Alpha-amylase domain
AU29_RS07760	SM00354	helix_turn _helix lactose operon repressor
AU29_RS07790	SM00347	helix_turn_helix multiple antibiotic resistance protein
AU29_RS07820	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS07820	SM00895	AU29_RS07820
AU29_RS07920	SM00347	helix_turn_helix multiple antibiotic resistance protein
AU29_RS07925	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS07975	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS07975	SM00895	AU29_RS07975
AU29_RS08000	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AU29_RS08030	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS08035	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS08070	SM00116	Domain in cystathionine beta-synthase and other proteins.
AU29_RS08070	SM00382	ATPases associated with a variety of cellular activities
AU29_RS08130	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AU29_RS08130	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AU29_RS08150	SM00448	cheY-homologous receiver domain
AU29_RS08150	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS08170	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS08170	SM00387	Histidine kinase-like ATPases
AU29_RS08170	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS08250	SM00900	AU29_RS08250
AU29_RS08260	SM00478	endonuclease III
AU29_RS08260	SM00525	AU29_RS08260
AU29_RS08280	SM00363	S4 RNA-binding domain
AU29_RS08305	SM00347	helix_turn_helix multiple antibiotic resistance protein
AU29_RS08355	SM00479	AU29_RS08355
AU29_RS08375	SM00354	helix_turn _helix lactose operon repressor
AU29_RS08450	SM00382	ATPases associated with a variety of cellular activities
AU29_RS08510	SM00028	Tetratricopeptide repeats
AU29_RS08565	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS08565	SM00387	Histidine kinase-like ATPases
AU29_RS08565	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS08565	SM00448	cheY-homologous receiver domain
AU29_RS08570	SM00421	helix_turn_helix, Lux Regulon
AU29_RS08570	SM00448	cheY-homologous receiver domain
AU29_RS08575	SM00422	helix_turn_helix, mercury resistance
AU29_RS08590	SM00421	helix_turn_helix, Lux Regulon
AU29_RS08590	SM00448	cheY-homologous receiver domain
AU29_RS08595	SM00387	Histidine kinase-like ATPases
AU29_RS08595	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS08610	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS08615	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS08650	SM00257	Lysin motif
AU29_RS08670	SM00382	ATPases associated with a variety of cellular activities
AU29_RS08735	SM00882	Coenzyme A transferase
AU29_RS08745	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS08750	SM00893	Electron transfer flavoprotein domain
AU29_RS08810	SM00382	ATPases associated with a variety of cellular activities
AU29_RS08825	SM00411	bacterial (prokaryotic) histone like domain
AU29_RS08830	SM00873	B3/4 domain
AU29_RS08830	SM00874	tRNA synthetase B5 domain
AU29_RS08830	SM00896	Ferredoxin-fold anticodon binding domain
AU29_RS08855	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AU29_RS08870	SM00477	DNA/RNA non-specific endonuclease
AU29_RS08870	SM00892	DNA/RNA non-specific endonuclease
AU29_RS08930	SM01060	AU29_RS08930
AU29_RS08945	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS08975	SM00465	GIY-YIG type nucleases (URI domain)
AU29_RS09025	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AU29_RS09030	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AU29_RS09030	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AU29_RS09030	SM00493	AU29_RS09030
AU29_RS09050	SM00870	AU29_RS09050
AU29_RS09065	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS09065	SM01134	AU29_RS09065
AU29_RS09085	SM00829	Enoylreductase
AU29_RS09095	SM00829	Enoylreductase
AU29_RS09110	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AU29_RS09135	SM00763	PrkA AAA domain
AU29_RS09145	SM00267	diguanylate cyclase
AU29_RS09165	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS09220	SM00830	Chorismate mutase type II
AU29_RS09230	SM00422	helix_turn_helix, mercury resistance
AU29_RS09235	SM00421	helix_turn_helix, Lux Regulon
AU29_RS09265	SM00382	ATPases associated with a variety of cellular activities
AU29_RS09270	SM00382	ATPases associated with a variety of cellular activities
AU29_RS09370	SM00357	Cold shock protein domain
AU29_RS09375	SM00458	Ricin-type beta-trefoil
AU29_RS09400	SM01329	AU29_RS09400
AU29_RS09435	SM00448	cheY-homologous receiver domain
AU29_RS09435	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS09440	SM00387	Histidine kinase-like ATPases
AU29_RS09445	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
AU29_RS09460	SM00382	ATPases associated with a variety of cellular activities
AU29_RS09500	SM00382	ATPases associated with a variety of cellular activities
AU29_RS09510	SM00487	DEAD-like helicases superfamily
AU29_RS09510	SM00490	helicase superfamily c-terminal domain
AU29_RS09510	SM00982	AU29_RS09510
AU29_RS09510	SM01058	CarD-like/TRCF domain
AU29_RS09515	SM00257	Lysin motif
AU29_RS09605	SM00825	Beta-ketoacyl synthase
AU29_RS09615	SM00822	AU29_RS09615
AU29_RS09620	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AU29_RS09660	SM00363	S4 RNA-binding domain
AU29_RS09670	SM00316	Ribosomal protein S1-like RNA-binding domain
AU29_RS09685	SM00047	Lysozyme subfamily 2
AU29_RS09730	SM00858	AU29_RS09730
AU29_RS09810	SM00867	YceI-like domain 
AU29_RS09815	SM00450	Rhodanese Homology Domain
AU29_RS09855	SM00155	Phospholipase D. Active site motifs.
AU29_RS09860	SM00506	Appr-1"-p processing enzyme
AU29_RS09885	SM00421	helix_turn_helix, Lux Regulon
AU29_RS09915	SM00481	DNA polymerase alpha chain like domain
AU29_RS10005	SM00255	Toll - interleukin 1 - resistance
AU29_RS10090	SM00528	Domain in histone-like proteins of HNS family
AU29_RS10135	SM00671	Sel1-like repeats.
AU29_RS10220	SM00382	ATPases associated with a variety of cellular activities
AU29_RS10300	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS10310	SM00877	AU29_RS10310
AU29_RS10315	SM00877	AU29_RS10315
AU29_RS10345	SM00877	AU29_RS10345
AU29_RS10350	SM00877	AU29_RS10350
AU29_RS10390	SM00877	AU29_RS10390
AU29_RS10395	SM00877	AU29_RS10395
AU29_RS10425	SM00871	Bacterial transcription activator, effector binding domain
AU29_RS10430	SM00936	Penicillin-binding protein 5, C-terminal domain 
AU29_RS10445	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS10455	SM00479	AU29_RS10455
AU29_RS10520	SM00984	UDP binding domain
AU29_RS10525	SM01350	AU29_RS10525
AU29_RS10710	SM00226	Low molecular weight phosphatase family
AU29_RS10720	SM01091	Transporter associated domain
AU29_RS10740	SM00052	Putative diguanylate phosphodiesterase
AU29_RS10740	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AU29_RS10740	SM00091	PAS domain
AU29_RS10740	SM00267	diguanylate cyclase
AU29_RS10745	SM00478	endonuclease III
AU29_RS10745	SM01009	AlkA N-terminal domain
AU29_RS10775	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS10775	SM00387	Histidine kinase-like ATPases
AU29_RS10775	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS10780	SM00448	cheY-homologous receiver domain
AU29_RS10780	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS10820	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AU29_RS10825	SM01133	AU29_RS10825
AU29_RS10845	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS10845	SM00866	AU29_RS10845
AU29_RS10915	SM00448	cheY-homologous receiver domain
AU29_RS10915	SM00850	LytTr DNA-binding domain
AU29_RS10920	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AU29_RS10920	SM00387	Histidine kinase-like ATPases
AU29_RS10925	SM00422	helix_turn_helix, mercury resistance
AU29_RS10940	SM00382	ATPases associated with a variety of cellular activities
AU29_RS10955	SM01217	AU29_RS10955
AU29_RS11065	SM00382	ATPases associated with a variety of cellular activities
AU29_RS11075	SM00354	helix_turn _helix lactose operon repressor
AU29_RS11095	SM00530	Helix-turn-helix XRE-family like proteins 
AU29_RS11135	SM00518	AP endonuclease family 2
AU29_RS11175	SM00841	Elongation factor P, C-terminal
AU29_RS11175	SM01185	AU29_RS11175
AU29_RS11185	SM00014	Acid phosphatase homologues
AU29_RS11195	SM00052	Putative diguanylate phosphodiesterase
AU29_RS11215	SM00382	ATPases associated with a variety of cellular activities
AU29_RS11235	SM00363	S4 RNA-binding domain
AU29_RS11240	SM00487	DEAD-like helicases superfamily
AU29_RS11240	SM00490	helicase superfamily c-terminal domain
AU29_RS11275	SM00364	Leucine-rich repeats, bacterial type
AU29_RS11275	SM00369	Leucine-rich repeats, typical (most populated) subfamily
AU29_RS11305	SM00421	helix_turn_helix, Lux Regulon
AU29_RS11305	SM00448	cheY-homologous receiver domain
AU29_RS11345	SM00382	ATPases associated with a variety of cellular activities
AU29_RS11370	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS11390	SM00382	ATPases associated with a variety of cellular activities
AU29_RS11400	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS11415	SM00387	Histidine kinase-like ATPases
AU29_RS11420	SM00421	helix_turn_helix, Lux Regulon
AU29_RS11420	SM00448	cheY-homologous receiver domain
AU29_RS11425	SM00387	Histidine kinase-like ATPases
AU29_RS11425	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS11425	SM00448	cheY-homologous receiver domain
AU29_RS11430	SM00434	DNA Topoisomerase IV
AU29_RS11435	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AU29_RS11445	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS11445	SM00895	AU29_RS11445
AU29_RS11525	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AU29_RS11530	SM00346	helix_turn_helix isocitrate lyase regulation
AU29_RS11535	SM00852	Probable molybdopterin binding domain
AU29_RS11600	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AU29_RS11640	SM00260	Two component signalling adaptor domain
AU29_RS11640	SM00448	cheY-homologous receiver domain
AU29_RS11645	SM00327	von Willebrand factor (vWF) type A domain
AU29_RS11685	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS11685	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AU29_RS11690	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
AU29_RS11735	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AU29_RS11775	SM00861	Transketolase, pyrimidine binding domain
AU29_RS11805	SM00354	helix_turn _helix lactose operon repressor
AU29_RS11835	SM00382	ATPases associated with a variety of cellular activities
AU29_RS11850	SM00062	Bacterial periplasmic substrate-binding proteins
AU29_RS11855	SM00062	Bacterial periplasmic substrate-binding proteins
AU29_RS11885	SM00382	ATPases associated with a variety of cellular activities
AU29_RS11925	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AU29_RS11950	SM00530	Helix-turn-helix XRE-family like proteins 
AU29_RS11970	SM00825	Beta-ketoacyl synthase
AU29_RS12010	SM00463	Small MutS-related domain
AU29_RS12080	SM00448	cheY-homologous receiver domain
AU29_RS12085	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS12085	SM00387	Histidine kinase-like ATPases
AU29_RS12085	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS12155	SM00052	Putative diguanylate phosphodiesterase
AU29_RS12155	SM00267	diguanylate cyclase
AU29_RS12240	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AU29_RS12240	SM00292	breast cancer carboxy-terminal domain
AU29_RS12240	SM00532	Ligase N family
AU29_RS12245	SM00771	ZipA, C-terminal domain (FtsZ-binding)
AU29_RS12290	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS12305	SM00671	Sel1-like repeats.
AU29_RS12315	SM00382	ATPases associated with a variety of cellular activities
AU29_RS12335	SM00822	AU29_RS12335
AU29_RS12360	SM00646	AU29_RS12360
AU29_RS12375	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS12380	SM00877	AU29_RS12380
AU29_RS12385	SM00877	AU29_RS12385
AU29_RS12430	SM00877	AU29_RS12430
AU29_RS12455	SM00877	AU29_RS12455
AU29_RS12460	SM00919	Malic enzyme, NAD binding domain
AU29_RS12460	SM01274	AU29_RS12460
AU29_RS12470	SM00861	Transketolase, pyrimidine binding domain
AU29_RS12500	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS12500	SM00387	Histidine kinase-like ATPases
AU29_RS12545	SM01130	AU29_RS12545
AU29_RS12625	SM00052	Putative diguanylate phosphodiesterase
AU29_RS12625	SM00267	diguanylate cyclase
AU29_RS12655	SM00116	Domain in cystathionine beta-synthase and other proteins.
AU29_RS12655	SM01240	AU29_RS12655
AU29_RS12665	SM00869	Autotransporter beta-domain
AU29_RS12700	SM00564	beta-propeller repeat
AU29_RS12720	SM00530	Helix-turn-helix XRE-family like proteins 
AU29_RS12730	SM00562	AU29_RS12730
AU29_RS12750	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS12760	SM01359	AU29_RS12760
AU29_RS12760	SM01360	AU29_RS12760
AU29_RS12765	SM00450	Rhodanese Homology Domain
AU29_RS12800	SM00271	DnaJ molecular chaperone homology domain
AU29_RS12885	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS12905	SM00938	Nitrogen regulatory protein P-II
AU29_RS12910	SM00382	ATPases associated with a variety of cellular activities
AU29_RS12910	SM00448	cheY-homologous receiver domain
AU29_RS12920	SM00387	Histidine kinase-like ATPases
AU29_RS12920	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS12925	SM01211	AU29_RS12925
AU29_RS12935	SM00062	Bacterial periplasmic substrate-binding proteins
AU29_RS13005	SM00358	Double-stranded RNA binding motif
AU29_RS13005	SM00535	Ribonuclease III family
AU29_RS13050	SM00487	DEAD-like helicases superfamily
AU29_RS13050	SM00490	helicase superfamily c-terminal domain
AU29_RS13070	SM00986	Uracil DNA glycosylase superfamily
AU29_RS13070	SM00987	UreE urease accessory protein, C-terminal domain 
AU29_RS13075	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AU29_RS13085	SM01144	AU29_RS13085
AU29_RS13090	SM00881	CoA binding domain
AU29_RS13095	SM00155	Phospholipase D. Active site motifs.
AU29_RS13135	SM00382	ATPases associated with a variety of cellular activities
AU29_RS13135	SM01086	C-terminal, D2-small domain, of ClpB protein
AU29_RS13145	SM00363	S4 RNA-binding domain
AU29_RS13160	SM00830	Chorismate mutase type II
AU29_RS13170	SM00830	Chorismate mutase type II
AU29_RS13185	SM00267	diguanylate cyclase
AU29_RS13210	SM00382	ATPases associated with a variety of cellular activities
AU29_RS13210	SM00962	SRP54-type protein, GTPase domain
AU29_RS13210	SM00963	SRP54-type protein, helical bundle domain
AU29_RS13220	SM01091	Transporter associated domain
AU29_RS13275	SM00382	ATPases associated with a variety of cellular activities
AU29_RS13535	SM01321	AU29_RS13535
AU29_RS13545	SM00382	ATPases associated with a variety of cellular activities
AU29_RS13595	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS13595	SM00387	Histidine kinase-like ATPases
AU29_RS13595	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS13600	SM00448	cheY-homologous receiver domain
AU29_RS13600	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS13650	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS13650	SM00895	AU29_RS13650
AU29_RS13655	SM00257	Lysin motif
AU29_RS13655	SM00749	bacterial OsmY and nodulation domain
AU29_RS13665	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AU29_RS13670	SM00450	Rhodanese Homology Domain
AU29_RS13680	SM00528	Domain in histone-like proteins of HNS family
AU29_RS13700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS13735	SM00382	ATPases associated with a variety of cellular activities
AU29_RS13755	SM00347	helix_turn_helix multiple antibiotic resistance protein
AU29_RS13825	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AU29_RS13835	SM00382	ATPases associated with a variety of cellular activities
AU29_RS13880	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS13880	SM01134	AU29_RS13880
AU29_RS13890	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AU29_RS13890	SM00382	ATPases associated with a variety of cellular activities
AU29_RS13895	SM00849	Metallo-beta-lactamase superfamily
AU29_RS13990	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AU29_RS13990	SM00382	ATPases associated with a variety of cellular activities
AU29_RS14005	SM00382	ATPases associated with a variety of cellular activities
AU29_RS14030	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS14070	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS14075	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS14085	SM00194	Protein tyrosine phosphatase, catalytic domain
AU29_RS14085	SM00404	Protein tyrosine phosphatase, catalytic domain motif
AU29_RS14165	SM00382	ATPases associated with a variety of cellular activities
AU29_RS14190	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS14235	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AU29_RS14235	SM00534	ATPase domain of DNA mismatch repair MUTS family
AU29_RS14270	SM01007	Class II Aldolase and Adducin N-terminal domain
AU29_RS14285	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS14285	SM01134	AU29_RS14285
AU29_RS14290	SM00347	helix_turn_helix multiple antibiotic resistance protein
AU29_RS14315	SM00257	Lysin motif
AU29_RS14385	SM01101	AU29_RS14385
AU29_RS14410	SM00487	DEAD-like helicases superfamily
AU29_RS14440	SM00849	Metallo-beta-lactamase superfamily
AU29_RS14450	SM01192	AU29_RS14450
AU29_RS14450	SM01193	AU29_RS14450
AU29_RS14500	SM00954	Region found in RelA / SpoT proteins
AU29_RS14510	SM00073	Histidine Phosphotransfer domain
AU29_RS14510	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS14510	SM00387	Histidine kinase-like ATPases
AU29_RS14510	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS14510	SM00448	cheY-homologous receiver domain
AU29_RS14520	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AU29_RS14525	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AU29_RS14575	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AU29_RS14575	SM00475	5'-3' exonuclease
AU29_RS14585	SM01007	Class II Aldolase and Adducin N-terminal domain
AU29_RS14610	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS14610	SM01134	AU29_RS14610
AU29_RS14655	SM00925	MltA specific insert domain
AU29_RS14665	SM00646	AU29_RS14665
AU29_RS14675	SM00382	ATPases associated with a variety of cellular activities
AU29_RS14730	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AU29_RS14745	SM00927	DNA mismatch repair enzyme MutH
AU29_RS14770	SM00563	Phosphate acyltransferases
AU29_RS14775	SM00354	helix_turn _helix lactose operon repressor
AU29_RS14780	SM00354	helix_turn _helix lactose operon repressor
AU29_RS14910	SM00257	Lysin motif
AU29_RS14925	SM00937	AU29_RS14925
AU29_RS14975	SM01022	AU29_RS14975
AU29_RS15015	SM01011	Aminopeptidase P, N-terminal domain
AU29_RS15075	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AU29_RS15095	SM00382	ATPases associated with a variety of cellular activities
AU29_RS15100	SM00382	ATPases associated with a variety of cellular activities
AU29_RS15105	SM00861	Transketolase, pyrimidine binding domain
AU29_RS15135	SM00829	Enoylreductase
AU29_RS15150	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS15150	SM00895	AU29_RS15150
AU29_RS15185	SM00731	SprT homologues.
AU29_RS15210	SM00732	Likely ribonuclease with RNase H fold.
AU29_RS15215	SM00346	helix_turn_helix isocitrate lyase regulation
AU29_RS15220	SM00382	ATPases associated with a variety of cellular activities
AU29_RS15235	SM01152	AU29_RS15235
AU29_RS15245	SM00729	Elongator protein 3, MiaB family, Radical SAM
AU29_RS15255	SM00870	AU29_RS15255
AU29_RS15275	SM00478	endonuclease III
AU29_RS15275	SM00525	AU29_RS15275
AU29_RS15350	SM00421	helix_turn_helix, Lux Regulon
AU29_RS15420	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AU29_RS15490	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AU29_RS15490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS15545	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS15575	SM00729	Elongator protein 3, MiaB family, Radical SAM
AU29_RS15600	SM00563	Phosphate acyltransferases
AU29_RS15605	SM00434	DNA Topoisomerase IV
AU29_RS15610	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS15610	SM00871	Bacterial transcription activator, effector binding domain
AU29_RS15620	SM00448	cheY-homologous receiver domain
AU29_RS15620	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS15625	SM00387	Histidine kinase-like ATPases
AU29_RS15625	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS15640	SM00387	Histidine kinase-like ATPases
AU29_RS15640	SM00433	TopoisomeraseII
AU29_RS15730	SM00244	prohibitin homologues
AU29_RS15745	SM01118	AU29_RS15745
AU29_RS15750	SM00287	Bacterial SH3 domain homologues
AU29_RS15755	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AU29_RS15765	SM00905	Dihydroneopterin aldolase
AU29_RS15770	SM01207	AU29_RS15770
AU29_RS15790	SM00400	zinc finger
AU29_RS15790	SM00493	AU29_RS15790
AU29_RS15790	SM00766	DNA primase DnaG DnaB-binding
AU29_RS16010	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AU29_RS16010	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS16015	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AU29_RS16015	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AU29_RS16175	SM00858	AU29_RS16175
AU29_RS16205	SM00829	Enoylreductase
AU29_RS16210	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS16210	SM01134	AU29_RS16210
AU29_RS16235	SM00749	bacterial OsmY and nodulation domain
AU29_RS16240	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AU29_RS16255	SM00465	GIY-YIG type nucleases (URI domain)
AU29_RS16300	SM00487	DEAD-like helicases superfamily
AU29_RS16300	SM00490	helicase superfamily c-terminal domain
AU29_RS16305	SM00028	Tetratricopeptide repeats
AU29_RS16310	SM00316	Ribosomal protein S1-like RNA-binding domain
AU29_RS16310	SM00322	K homology RNA-binding domain
AU29_RS16315	SM01387	AU29_RS16315
AU29_RS16335	SM00316	Ribosomal protein S1-like RNA-binding domain
AU29_RS16335	SM00322	K homology RNA-binding domain
AU29_RS16380	SM00382	ATPases associated with a variety of cellular activities
AU29_RS16390	SM01103	AU29_RS16390
AU29_RS16470	SM00382	ATPases associated with a variety of cellular activities
AU29_RS16500	SM00382	ATPases associated with a variety of cellular activities
AU29_RS16545	SM00073	Histidine Phosphotransfer domain
AU29_RS16545	SM00091	PAS domain
AU29_RS16545	SM00387	Histidine kinase-like ATPases
AU29_RS16545	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS16545	SM00448	cheY-homologous receiver domain
AU29_RS16550	SM00729	Elongator protein 3, MiaB family, Radical SAM
AU29_RS16605	SM01130	AU29_RS16605
AU29_RS16610	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS16610	SM00895	AU29_RS16610
AU29_RS16650	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AU29_RS16655	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AU29_RS16695	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS16695	SM00895	AU29_RS16695
AU29_RS16700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS16760	SM00316	Ribosomal protein S1-like RNA-binding domain
AU29_RS16790	SM00052	Putative diguanylate phosphodiesterase
AU29_RS16790	SM00267	diguanylate cyclase
AU29_RS16795	SM00829	Enoylreductase
AU29_RS16815	SM00878	Biotin carboxylase C-terminal domain
AU29_RS16855	SM00052	Putative diguanylate phosphodiesterase
AU29_RS16855	SM00267	diguanylate cyclase
AU29_RS16980	SM00422	helix_turn_helix, mercury resistance
AU29_RS16995	SM00662	RNA polymerases D
AU29_RS17000	SM00363	S4 RNA-binding domain
AU29_RS17000	SM01390	AU29_RS17000
AU29_RS17065	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AU29_RS17070	SM01374	AU29_RS17070
AU29_RS17090	SM00322	K homology RNA-binding domain
AU29_RS17105	SM01382	AU29_RS17105
AU29_RS17105	SM01383	AU29_RS17105
AU29_RS17125	SM01403	AU29_RS17125
AU29_RS17150	SM00838	Elongation factor G C-terminus
AU29_RS17150	SM00889	Elongation factor G, domain IV
AU29_RS17215	SM00382	ATPases associated with a variety of cellular activities
AU29_RS17250	SM00100	Cyclic nucleotide-monophosphate binding domain
AU29_RS17250	SM00419	helix_turn_helix, cAMP Regulatory protein
AU29_RS17310	SM00869	Autotransporter beta-domain
AU29_RS17355	SM00965	Secretin and TonB N terminus short domain
AU29_RS17400	SM00363	S4 RNA-binding domain
AU29_RS17420	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS17420	SM00387	Histidine kinase-like ATPases
AU29_RS17420	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS17425	SM00448	cheY-homologous receiver domain
AU29_RS17425	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS17435	SM00316	Ribosomal protein S1-like RNA-binding domain
AU29_RS17435	SM00732	Likely ribonuclease with RNase H fold.
AU29_RS17440	SM00899	AU29_RS17440
AU29_RS17490	SM00421	helix_turn_helix, Lux Regulon
AU29_RS17520	SM00382	ATPases associated with a variety of cellular activities
AU29_RS17525	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS17525	SM01134	AU29_RS17525
AU29_RS17535	SM00450	Rhodanese Homology Domain
AU29_RS17570	SM01130	AU29_RS17570
AU29_RS17575	SM00346	helix_turn_helix isocitrate lyase regulation
AU29_RS17595	SM00642	Alpha-amylase domain
AU29_RS17600	SM00642	Alpha-amylase domain
AU29_RS17605	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AU29_RS17620	SM00354	helix_turn _helix lactose operon repressor
AU29_RS17640	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS17675	SM00382	ATPases associated with a variety of cellular activities
AU29_RS17705	SM00382	ATPases associated with a variety of cellular activities
AU29_RS17710	SM00382	ATPases associated with a variety of cellular activities
AU29_RS17755	SM00382	ATPases associated with a variety of cellular activities
AU29_RS17760	SM00382	ATPases associated with a variety of cellular activities
AU29_RS17760	SM00962	SRP54-type protein, GTPase domain
AU29_RS17760	SM00963	SRP54-type protein, helical bundle domain
AU29_RS17790	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AU29_RS17790	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS17790	SM00319	Homologues of the ligand binding domain of Tar
AU29_RS17835	SM00382	ATPases associated with a variety of cellular activities
AU29_RS17880	SM00014	Acid phosphatase homologues
AU29_RS17895	SM00870	AU29_RS17895
AU29_RS17915	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS17915	SM00866	AU29_RS17915
AU29_RS17935	SM00421	helix_turn_helix, Lux Regulon
AU29_RS17960	SM00052	Putative diguanylate phosphodiesterase
AU29_RS17980	SM00052	Putative diguanylate phosphodiesterase
AU29_RS17980	SM00267	diguanylate cyclase
AU29_RS17985	SM00028	Tetratricopeptide repeats
AU29_RS18045	SM00382	ATPases associated with a variety of cellular activities
AU29_RS18050	SM00382	ATPases associated with a variety of cellular activities
AU29_RS18080	SM00354	helix_turn _helix lactose operon repressor
AU29_RS18170	SM00357	Cold shock protein domain
AU29_RS18235	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS18240	SM00047	Lysozyme subfamily 2
AU29_RS18250	SM00642	Alpha-amylase domain
AU29_RS18265	SM00346	helix_turn_helix isocitrate lyase regulation
AU29_RS18305	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AU29_RS18315	SM01007	Class II Aldolase and Adducin N-terminal domain
AU29_RS18320	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS18395	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS18395	SM00895	AU29_RS18395
AU29_RS18410	SM00354	helix_turn _helix lactose operon repressor
AU29_RS18415	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AU29_RS18425	SM00971	Serine acetyltransferase, N-terminal
AU29_RS18445	SM00450	Rhodanese Homology Domain
AU29_RS18470	SM00829	Enoylreductase
AU29_RS18560	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AU29_RS18560	SM01232	AU29_RS18560
AU29_RS18615	SM00849	Metallo-beta-lactamase superfamily
AU29_RS18625	SM00532	Ligase N family
AU29_RS18630	SM00072	Guanylate kinase homologues.
AU29_RS18635	SM01409	AU29_RS18635
AU29_RS18640	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AU29_RS18640	SM00954	Region found in RelA / SpoT proteins
AU29_RS18650	SM00487	DEAD-like helicases superfamily
AU29_RS18650	SM00490	helicase superfamily c-terminal domain
AU29_RS18710	SM00869	Autotransporter beta-domain
AU29_RS18720	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS18735	SM00831	Cation transporter/ATPase, N-terminus
AU29_RS18785	SM00382	ATPases associated with a variety of cellular activities
AU29_RS18810	SM00530	Helix-turn-helix XRE-family like proteins 
AU29_RS18830	SM00387	Histidine kinase-like ATPases
AU29_RS18835	SM00421	helix_turn_helix, Lux Regulon
AU29_RS18835	SM00448	cheY-homologous receiver domain
AU29_RS18855	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS18855	SM01134	AU29_RS18855
AU29_RS18985	SM00382	ATPases associated with a variety of cellular activities
AU29_RS18990	SM01235	AU29_RS18990
AU29_RS19010	SM00448	cheY-homologous receiver domain
AU29_RS19010	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS19020	SM00073	Histidine Phosphotransfer domain
AU29_RS19020	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS19020	SM00387	Histidine kinase-like ATPases
AU29_RS19020	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS19020	SM00448	cheY-homologous receiver domain
AU29_RS19030	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AU29_RS19045	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS19045	SM00895	AU29_RS19045
AU29_RS19060	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AU29_RS19070	SM00387	Histidine kinase-like ATPases
AU29_RS19070	SM00433	TopoisomeraseII
AU29_RS19080	SM00480	DNA polymerase III beta subunit
AU29_RS19085	SM00382	ATPases associated with a variety of cellular activities
AU29_RS19085	SM00760	Bacterial dnaA protein helix-turn-helix domain
AU29_RS19100	SM01234	AU29_RS19100
AU29_RS19150	SM00382	ATPases associated with a variety of cellular activities
AU29_RS19205	SM00382	ATPases associated with a variety of cellular activities
AU29_RS19250	SM01228	AU29_RS19250
AU29_RS19260	SM00344	helix_turn_helix ASNC type
AU29_RS19270	SM00327	von Willebrand factor (vWF) type A domain
AU29_RS19275	SM00382	ATPases associated with a variety of cellular activities
AU29_RS19290	SM00382	ATPases associated with a variety of cellular activities
AU29_RS19310	SM00354	helix_turn _helix lactose operon repressor
AU29_RS19320	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS19320	SM00895	AU29_RS19320
AU29_RS19365	SM00382	ATPases associated with a variety of cellular activities
AU29_RS19440	SM00487	DEAD-like helicases superfamily
AU29_RS19440	SM00490	helicase superfamily c-terminal domain
AU29_RS19450	SM00357	Cold shock protein domain
AU29_RS19450	SM00382	ATPases associated with a variety of cellular activities
AU29_RS19450	SM00959	Rho termination factor, N-terminal domain
AU29_RS19470	SM00984	UDP binding domain
AU29_RS19565	SM01219	AU29_RS19565
AU29_RS19640	SM00341	Helicase and RNase D C-terminal
AU29_RS19640	SM00487	DEAD-like helicases superfamily
AU29_RS19640	SM00490	helicase superfamily c-terminal domain
AU29_RS19640	SM00956	AU29_RS19640
AU29_RS19735	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AU29_RS19835	SM00563	Phosphate acyltransferases
AU29_RS19845	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AU29_RS19845	SM00474	3'-5' exonuclease
AU29_RS19845	SM00475	5'-3' exonuclease
AU29_RS19845	SM00482	DNA polymerase A domain
AU29_RS19865	SM00729	Elongator protein 3, MiaB family, Radical SAM
AU29_RS19870	SM00382	ATPases associated with a variety of cellular activities
AU29_RS19870	SM00448	cheY-homologous receiver domain
AU29_RS19875	SM00091	PAS domain
AU29_RS19875	SM00387	Histidine kinase-like ATPases
AU29_RS19875	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS19880	SM01230	AU29_RS19880
AU29_RS19900	SM00729	Elongator protein 3, MiaB family, Radical SAM
AU29_RS19950	SM01133	AU29_RS19950
AU29_RS19965	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS19965	SM01134	AU29_RS19965
AU29_RS19990	SM00530	Helix-turn-helix XRE-family like proteins 
AU29_RS20010	SM00530	Helix-turn-helix XRE-family like proteins 
AU29_RS20035	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS20070	SM00530	Helix-turn-helix XRE-family like proteins 
AU29_RS20085	SM01007	Class II Aldolase and Adducin N-terminal domain
AU29_RS20100	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS20105	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS20155	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS20155	SM00387	Histidine kinase-like ATPases
AU29_RS20155	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS20160	SM00448	cheY-homologous receiver domain
AU29_RS20160	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS20205	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS20205	SM00866	AU29_RS20205
AU29_RS20230	SM00382	ATPases associated with a variety of cellular activities
AU29_RS20250	SM01133	AU29_RS20250
AU29_RS20315	SM00382	ATPases associated with a variety of cellular activities
AU29_RS20315	SM01086	C-terminal, D2-small domain, of ClpB protein
AU29_RS20330	SM00354	helix_turn _helix lactose operon repressor
AU29_RS20335	SM00487	DEAD-like helicases superfamily
AU29_RS20335	SM00490	helicase superfamily c-terminal domain
AU29_RS20395	SM01005	Alanine racemase, C-terminal domain
AU29_RS20400	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS20465	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS20485	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AU29_RS20610	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AU29_RS20610	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AU29_RS20615	SM00649	Ribosomal protein L11/L12
AU29_RS20640	SM00663	RNA polymerase I subunit A N-terminus
AU29_RS20665	SM00876	Biotin and Thiamin Synthesis associated domain
AU29_RS20720	SM00411	bacterial (prokaryotic) histone like domain
AU29_RS20735	SM00387	Histidine kinase-like ATPases
AU29_RS20735	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS20740	SM00382	ATPases associated with a variety of cellular activities
AU29_RS20740	SM00448	cheY-homologous receiver domain
AU29_RS20745	SM01209	AU29_RS20745
AU29_RS20745	SM01210	AU29_RS20745
AU29_RS20750	SM00798	AICARFT/IMPCHase bienzyme
AU29_RS20750	SM00851	MGS-like domain
AU29_RS20800	SM01022	AU29_RS20800
AU29_RS20805	SM00346	helix_turn_helix isocitrate lyase regulation
AU29_RS20810	SM01018	B12 binding domain
AU29_RS20835	SM00363	S4 RNA-binding domain
AU29_RS20845	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS20845	SM01134	AU29_RS20845
AU29_RS20935	SM00382	ATPases associated with a variety of cellular activities
AU29_RS20960	SM00563	Phosphate acyltransferases
AU29_RS21010	SM00829	Enoylreductase
AU29_RS21015	SM00382	ATPases associated with a variety of cellular activities
AU29_RS21020	SM01005	Alanine racemase, C-terminal domain
AU29_RS21095	SM00382	ATPases associated with a variety of cellular activities
AU29_RS21105	SM00052	Putative diguanylate phosphodiesterase
AU29_RS21110	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS21115	SM00422	helix_turn_helix, mercury resistance
AU29_RS21200	SM00028	Tetratricopeptide repeats
AU29_RS21210	SM00671	Sel1-like repeats.
AU29_RS21220	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AU29_RS21250	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS21250	SM00387	Histidine kinase-like ATPases
AU29_RS21250	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS21255	SM00448	cheY-homologous receiver domain
AU29_RS21255	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS21270	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS21285	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS21315	SM00448	cheY-homologous receiver domain
AU29_RS21320	SM00091	PAS domain
AU29_RS21320	SM00387	Histidine kinase-like ATPases
AU29_RS21360	SM00421	helix_turn_helix, Lux Regulon
AU29_RS21365	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS21385	SM00014	Acid phosphatase homologues
AU29_RS21435	SM00883	Chaperonin 10 Kd subunit
AU29_RS21460	SM00841	Elongation factor P, C-terminal
AU29_RS21460	SM01185	AU29_RS21460
AU29_RS21475	SM00421	helix_turn_helix, Lux Regulon
AU29_RS21540	SM00479	AU29_RS21540
AU29_RS21545	SM00062	Bacterial periplasmic substrate-binding proteins
AU29_RS21545	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AU29_RS21580	SM00646	AU29_RS21580
AU29_RS21585	SM00853	MutL C terminal dimerisation domain
AU29_RS21585	SM01340	AU29_RS21585
AU29_RS21605	SM00244	prohibitin homologues
AU29_RS21610	SM00244	prohibitin homologues
AU29_RS21620	SM00788	Adenylosuccinate synthetase
AU29_RS21630	SM00316	Ribosomal protein S1-like RNA-binding domain
AU29_RS21630	SM00357	Cold shock protein domain
AU29_RS21630	SM00955	AU29_RS21630
AU29_RS21635	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AU29_RS21695	SM00420	helix_turn_helix, Deoxyribose operon repressor
AU29_RS21695	SM01134	AU29_RS21695
AU29_RS21720	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AU29_RS21730	SM01007	Class II Aldolase and Adducin N-terminal domain
AU29_RS21835	SM01091	Transporter associated domain
AU29_RS21970	SM00642	Alpha-amylase domain
AU29_RS21980	SM00354	helix_turn _helix lactose operon repressor
AU29_RS21985	SM00831	Cation transporter/ATPase, N-terminus
AU29_RS22110	SM00354	helix_turn _helix lactose operon repressor
AU29_RS22135	SM00829	Enoylreductase
AU29_RS22195	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS22205	SM00421	helix_turn_helix, Lux Regulon
AU29_RS22280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AU29_RS22280	SM00895	AU29_RS22280
AU29_RS22370	SM00487	DEAD-like helicases superfamily
AU29_RS22430	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AU29_RS22445	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AU29_RS22445	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS22445	SM00319	Homologues of the ligand binding domain of Tar
AU29_RS22450	SM00382	ATPases associated with a variety of cellular activities
AU29_RS22495	SM00382	ATPases associated with a variety of cellular activities
AU29_RS22515	SM00421	helix_turn_helix, Lux Regulon
AU29_RS22520	SM00421	helix_turn_helix, Lux Regulon
AU29_RS22535	SM00267	diguanylate cyclase
AU29_RS22585	SM00749	bacterial OsmY and nodulation domain
AU29_RS22615	SM01133	AU29_RS22615
AU29_RS22620	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
AU29_RS22655	SM00382	ATPases associated with a variety of cellular activities
AU29_RS22660	SM00530	Helix-turn-helix XRE-family like proteins 
AU29_RS22665	SM00382	ATPases associated with a variety of cellular activities
AU29_RS22685	SM00855	Phosphoglycerate mutase family
AU29_RS22690	SM00342	helix_turn_helix, arabinose operon control protein
AU29_RS22690	SM00871	Bacterial transcription activator, effector binding domain
AU29_RS22700	SM00448	cheY-homologous receiver domain
AU29_RS22700	SM00862	Transcriptional regulatory protein, C terminal
AU29_RS22705	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AU29_RS22705	SM00387	Histidine kinase-like ATPases
AU29_RS22705	SM00388	His Kinase A (phosphoacceptor) domain
AU29_RS22750	SM00448	cheY-homologous receiver domain
AU29_RS22750	SM00862	Transcriptional regulatory protein, C terminal
