AU28_RS00005	PF00291	Pyridoxal-phosphate dependent enzyme
AU28_RS00005	PF14821	Threonine synthase N terminus
AU28_RS00010	PF00696	Amino acid kinase family
AU28_RS00010	PF00742	Homoserine dehydrogenase
AU28_RS00010	PF03447	Homoserine dehydrogenase, NAD binding domain
AU28_RS00010	PF13840	ACT domain
AU28_RS00015	PF00288	GHMP kinases N terminal domain
AU28_RS00015	PF08544	GHMP kinases C terminal
AU28_RS00020	PF00291	Pyridoxal-phosphate dependent enzyme
AU28_RS00020	PF14821	Threonine synthase N terminus
AU28_RS00025	PF03883	AU28_RS00025
AU28_RS00030	PF01235	AU28_RS00030
AU28_RS00035	PF00923	Transaldolase
AU28_RS00040	PF00994	Probable molybdopterin binding domain
AU28_RS00045	PF01184	AU28_RS00045
AU28_RS00050	PF03981	AU28_RS00050
AU28_RS00050	PF13099	AU28_RS00050
AU28_RS00055	PF10807	AU28_RS00055
AU28_RS00060	PF00012	Hsp70 protein
AU28_RS00065	PF00226	DnaJ domain
AU28_RS00065	PF00684	DnaJ central domain
AU28_RS00065	PF01556	DnaJ C terminal domain
AU28_RS00070	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS00075	PF16083	AU28_RS00075
AU28_RS00080	PF05838	Glycosyl hydrolase 108
AU28_RS00080	PF09374	Predicted Peptidoglycan domain
AU28_RS00085	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS00090	PF00704	Glycosyl hydrolases family 18
AU28_RS00090	PF02839	Carbohydrate binding domain
AU28_RS00100	PF15977	AU28_RS00100
AU28_RS00105	PF00419	Fimbrial protein
AU28_RS00110	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS00110	PF02753	Pili assembly chaperone PapD, C-terminal domain
AU28_RS00115	PF00577	Outer membrane usher protein
AU28_RS00115	PF13953	PapC C-terminal domain
AU28_RS00115	PF13954	PapC N-terminal domain
AU28_RS00120	PF00419	Fimbrial protein
AU28_RS00125	PF00419	Fimbrial protein
AU28_RS00130	PF00419	Fimbrial protein
AU28_RS00135	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS00135	PF02753	Pili assembly chaperone PapD, C-terminal domain
AU28_RS00140	PF01323	DSBA-like thioredoxin domain
AU28_RS00150	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS00155	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS00160	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS00165	PF05935	Arylsulfotransferase (ASST)
AU28_RS00170	PF00149	Calcineurin-like phosphoesterase
AU28_RS00170	PF02872	5'-nucleotidase, C-terminal domain
AU28_RS00175	PF03502	Nucleoside-specific channel-forming protein, Tsx
AU28_RS00180	PF00884	Sulfatase
AU28_RS00185	PF04055	Radical SAM superfamily
AU28_RS00185	PF13186	Iron-sulfur cluster-binding domain
AU28_RS00185	PF13353	4Fe-4S single cluster domain
AU28_RS00195	PF05935	Arylsulfotransferase (ASST)
AU28_RS00200	PF06965	Na+/H+ antiporter 1
AU28_RS00205	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS00205	PF03466	LysR substrate binding domain
AU28_RS00210	PF01055	Glycosyl hydrolases family 31
AU28_RS00215	PF13347	MFS/sugar transport protein
AU28_RS00220	PF01649	Ribosomal protein S20
AU28_RS00225	PF10837	AU28_RS00225
AU28_RS00230	PF01687	Riboflavin kinase
AU28_RS00230	PF06574	FAD synthetase
AU28_RS00235	PF00133	tRNA synthetases class I (I, L, M and V)
AU28_RS00235	PF06827	Zinc finger found in FPG and IleRS
AU28_RS00235	PF08264	Anticodon-binding domain of tRNA
AU28_RS00240	PF01252	AU28_RS00240
AU28_RS00245	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AU28_RS00250	PF02401	LytB protein
AU28_RS00265	PF01156	Inosine-uridine preferring nucleoside hydrolase
AU28_RS00270	PF00072	Response regulator receiver domain
AU28_RS00270	PF12431	AU28_RS00270
AU28_RS00275	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS00275	PF17203	AU28_RS00275
AU28_RS00280	PF03977	AU28_RS00280
AU28_RS00285	PF00364	Biotin-requiring enzyme
AU28_RS00285	PF00682	HMGL-like
AU28_RS00285	PF02436	Conserved carboxylase domain
AU28_RS00290	PF04277	AU28_RS00290
AU28_RS00295	PF03390	AU28_RS00295
AU28_RS00300	PF08218	Citrate lyase ligase C-terminal domain
AU28_RS00305	PF06857	AU28_RS00305
AU28_RS00310	PF03328	HpcH/HpaI aldolase/citrate lyase family
AU28_RS00315	PF04223	Citrate lyase, alpha subunit (CitF)
AU28_RS00320	PF03802	AU28_RS00320
AU28_RS00325	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
AU28_RS00330	PF01113	Dihydrodipicolinate reductase, N-terminus
AU28_RS00330	PF05173	Dihydrodipicolinate reductase, C-terminus
AU28_RS00335	PF00117	Glutamine amidotransferase class-I
AU28_RS00335	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
AU28_RS00340	PF02142	MGS-like domain
AU28_RS00340	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AU28_RS00340	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AU28_RS00345	PF07180	Protein of unknown function (DUF1401)
AU28_RS00350	PF00132	Bacterial transferase hexapeptide (six repeats)
AU28_RS00355	PF00378	Enoyl-CoA hydratase/isomerase family
AU28_RS00360	PF00501	AMP-binding enzyme
AU28_RS00360	PF13193	AMP-binding enzyme C-terminal domain
AU28_RS00365	PF02515	CoA-transferase family III
AU28_RS00370	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AU28_RS00370	PF02770	Acyl-CoA dehydrogenase, middle domain
AU28_RS00370	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AU28_RS00375	PF02028	BCCT family transporter
AU28_RS00385	PF01012	Electron transfer flavoprotein domain
AU28_RS00390	PF00766	Electron transfer flavoprotein FAD-binding domain
AU28_RS00390	PF01012	Electron transfer flavoprotein domain
AU28_RS00395	PF12831	FAD dependent oxidoreductase
AU28_RS00400	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
AU28_RS00405	PF00083	Sugar (and other) transporter
AU28_RS00410	PF06004	Bacterial protein of unknown function (DUF903)
AU28_RS00420	PF07338	Protein of unknown function (DUF1471)
AU28_RS00430	PF00884	Sulfatase
AU28_RS00440	PF02525	Flavodoxin-like fold
AU28_RS00445	PF00999	Sodium/hydrogen exchanger family
AU28_RS00445	PF02254	TrkA-N domain
AU28_RS00450	PF00186	Dihydrofolate reductase
AU28_RS00455	PF00149	Calcineurin-like phosphoesterase
AU28_RS00460	PF04379	Protein of unknown function (DUF525)
AU28_RS00465	PF00398	Ribosomal RNA adenine dimethylase
AU28_RS00470	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
AU28_RS00475	PF00639	PPIC-type PPIASE domain
AU28_RS00475	PF09312	SurA N-terminal domain
AU28_RS00475	PF13616	PPIC-type PPIASE domain
AU28_RS00480	PF03968	OstA-like protein
AU28_RS00480	PF04453	Organic solvent tolerance protein
AU28_RS00485	PF00226	DnaJ domain
AU28_RS00485	PF05099	Tellurite resistance protein TerB
AU28_RS00490	PF00849	RNA pseudouridylate synthase
AU28_RS00495	PF00176	SNF2 family N-terminal domain
AU28_RS00495	PF00271	Helicase conserved C-terminal domain
AU28_RS00495	PF12137	RNA polymerase recycling family C-terminal
AU28_RS00500	PF00136	DNA polymerase family B
AU28_RS00500	PF03104	DNA polymerase family B, exonuclease domain
AU28_RS00505	PF02698	DUF218 domain
AU28_RS00510	PF15942	AU28_RS00510
AU28_RS00515	PF00596	Class II Aldolase and Adducin N-terminal domain
AU28_RS00520	PF02610	L-arabinose isomerase
AU28_RS00520	PF11762	L-arabinose isomerase C-terminal domain
AU28_RS00525	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AU28_RS00530	PF02311	AraC-like ligand binding domain
AU28_RS00530	PF12833	Helix-turn-helix domain
AU28_RS00535	PF09335	AU28_RS00535
AU28_RS00540	PF00005	ABC transporter
AU28_RS00545	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS00550	PF13343	Bacterial extracellular solute-binding protein
AU28_RS00555	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AU28_RS00555	PF12793	AU28_RS00555
AU28_RS00560	PF15894	AU28_RS00560
AU28_RS00570	PF00694	Aconitase C-terminal domain
AU28_RS00575	PF00330	Aconitase family (aconitate hydratase)
AU28_RS00580	PF00180	Isocitrate/isopropylmalate dehydrogenase
AU28_RS00585	PF00682	HMGL-like
AU28_RS00585	PF08502	LeuA allosteric (dimerisation) domain
AU28_RS00590	PF08054	AU28_RS00590
AU28_RS00595	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS00595	PF03466	LysR substrate binding domain
AU28_RS00600	PF00205	Thiamine pyrophosphate enzyme, central domain
AU28_RS00600	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AU28_RS00600	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AU28_RS00605	PF10369	Small subunit of acetolactate synthase
AU28_RS00605	PF13710	ACT domain
AU28_RS00610	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS00610	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AU28_RS00615	PF02381	MraZ protein
AU28_RS00620	PF01795	MraW methylase family
AU28_RS00625	PF04999	AU28_RS00625
AU28_RS00630	PF00905	Penicillin binding protein transpeptidase domain
AU28_RS00630	PF03717	Penicillin-binding Protein dimerisation domain
AU28_RS00635	PF01225	Mur ligase family, catalytic domain
AU28_RS00635	PF02875	Mur ligase family, glutamate ligase domain
AU28_RS00635	PF08245	Mur ligase middle domain
AU28_RS00640	PF01225	Mur ligase family, catalytic domain
AU28_RS00640	PF02875	Mur ligase family, glutamate ligase domain
AU28_RS00640	PF08245	Mur ligase middle domain
AU28_RS00645	PF00953	Glycosyl transferase family 4
AU28_RS00645	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
AU28_RS00650	PF02875	Mur ligase family, glutamate ligase domain
AU28_RS00650	PF08245	Mur ligase middle domain
AU28_RS00655	PF01098	AU28_RS00655
AU28_RS00660	PF03033	Glycosyltransferase family 28 N-terminal domain
AU28_RS00660	PF04101	Glycosyltransferase family 28 C-terminal domain
AU28_RS00665	PF01225	Mur ligase family, catalytic domain
AU28_RS00665	PF02875	Mur ligase family, glutamate ligase domain
AU28_RS00665	PF08245	Mur ligase middle domain
AU28_RS00670	PF01820	D-ala D-ala ligase N-terminus
AU28_RS00670	PF07478	D-ala D-ala ligase C-terminus
AU28_RS00675	PF03799	Cell division protein FtsQ
AU28_RS00675	PF08478	POTRA domain, FtsQ-type
AU28_RS00680	PF02491	SHS2 domain inserted in FTSA
AU28_RS00680	PF14450	Cell division protein FtsA
AU28_RS00685	PF00091	Tubulin/FtsZ family, GTPase domain
AU28_RS00685	PF12327	FtsZ family, C-terminal domain
AU28_RS00690	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
AU28_RS00695	PF06558	AU28_RS00695
AU28_RS00700	PF01043	SecA preprotein cross-linking domain
AU28_RS00700	PF02810	SEC-C motif
AU28_RS00700	PF07516	SecA Wing and Scaffold domain
AU28_RS00700	PF07517	SecA DEAD-like domain
AU28_RS00705	PF00293	NUDIX domain
AU28_RS00710	PF00248	Aldo/keto reductase family
AU28_RS00715	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS00715	PF03466	LysR substrate binding domain
AU28_RS00720	PF03884	Domain of unknown function (DUF329)
AU28_RS00725	PF07072	Protein of unknown function (DUF1342)
AU28_RS00730	PF01121	Dephospho-CoA kinase
AU28_RS00735	PF00478	IMP dehydrogenase / GMP reductase domain
AU28_RS00740	PF00482	Type II secretion system (T2SS), protein F
AU28_RS00745	PF00437	Type II/IV secretion system protein
AU28_RS00745	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
AU28_RS00750	PF13633	Prokaryotic N-terminal methylation site
AU28_RS00755	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
AU28_RS00755	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
AU28_RS00760	PF01510	N-acetylmuramoyl-L-alanine amidase
AU28_RS00765	PF17113	AU28_RS00765
AU28_RS00770	PF04616	Glycosyl hydrolases family 43
AU28_RS00775	PF13347	MFS/sugar transport protein
AU28_RS00780	PF00324	Amino acid permease
AU28_RS00785	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS00785	PF07729	FCD domain
AU28_RS00790	PF00456	Transketolase, thiamine diphosphate binding domain
AU28_RS00795	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AU28_RS00795	PF00364	Biotin-requiring enzyme
AU28_RS00795	PF02817	e3 binding domain
AU28_RS00800	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AU28_RS00800	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS00810	PF11453	AU28_RS00810
AU28_RS00815	PF11737	AU28_RS00815
AU28_RS00820	PF00330	Aconitase family (aconitate hydratase)
AU28_RS00820	PF06434	Aconitate hydratase 2 N-terminus
AU28_RS00820	PF11791	Aconitate B N-terminal domain
AU28_RS00830	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AU28_RS00835	PF06062	AU28_RS00835
AU28_RS00840	PF03812	AU28_RS00840
AU28_RS00845	PF07005	Protein of unknown function, DUF1537
AU28_RS00845	PF17042	AU28_RS00845
AU28_RS00850	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
AU28_RS00855	PF00455	AU28_RS00855
AU28_RS00855	PF08220	DeoR-like helix-turn-helix domain
AU28_RS00860	PF02675	S-adenosylmethionine decarboxylase
AU28_RS00865	PF01564	Spermine/spermidine synthase
AU28_RS00870	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
AU28_RS00875	PF00394	Multicopper oxidase
AU28_RS00875	PF07731	Multicopper oxidase
AU28_RS00875	PF07732	Multicopper oxidase
AU28_RS00880	PF01011	PQQ enzyme repeat
AU28_RS00885	PF00156	Phosphoribosyl transferase domain
AU28_RS00890	PF00484	Carbonic anhydrase
AU28_RS00895	PF00005	ABC transporter
AU28_RS00900	PF01061	AU28_RS00900
AU28_RS00905	PF00419	Fimbrial protein
AU28_RS00910	PF00577	Outer membrane usher protein
AU28_RS00910	PF13953	PapC C-terminal domain
AU28_RS00910	PF13954	PapC N-terminal domain
AU28_RS00915	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS00915	PF02753	Pili assembly chaperone PapD, C-terminal domain
AU28_RS00920	PF00419	Fimbrial protein
AU28_RS00925	PF03610	PTS system fructose IIA component
AU28_RS00930	PF01522	Polysaccharide deacetylase
AU28_RS00935	PF02261	Aspartate decarboxylase
AU28_RS00940	PF02569	Pantoate-beta-alanine ligase
AU28_RS00945	PF02548	Ketopantoate hydroxymethyltransferase
AU28_RS00950	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
AU28_RS00955	PF01743	Poly A polymerase head domain
AU28_RS00955	PF12626	Polymerase A arginine-rich C-terminus
AU28_RS00955	PF12627	Probable RNA and SrmB- binding site of polymerase A
AU28_RS00960	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AU28_RS00965	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AU28_RS00970	PF03749	Sugar fermentation stimulation protein
AU28_RS00975	PF02834	LigT like Phosphoesterase
AU28_RS00980	PF00270	DEAD/DEAH box helicase
AU28_RS00980	PF00271	Helicase conserved C-terminal domain
AU28_RS00980	PF04408	Helicase associated domain (HA2)
AU28_RS00980	PF08482	AU28_RS00980
AU28_RS00985	PF00905	Penicillin binding protein transpeptidase domain
AU28_RS00985	PF00912	Transglycosylase
AU28_RS00985	PF14812	AU28_RS00985
AU28_RS00985	PF14814	Bifunctional transglycosylase second domain
AU28_RS00990	PF00593	TonB dependent receptor
AU28_RS00990	PF07715	TonB-dependent Receptor Plug Domain
AU28_RS00995	PF00005	ABC transporter
AU28_RS01000	PF01497	Periplasmic binding protein
AU28_RS01005	PF01032	FecCD transport family
AU28_RS01010	PF00419	Fimbrial protein
AU28_RS01015	PF00577	Outer membrane usher protein
AU28_RS01015	PF13953	PapC C-terminal domain
AU28_RS01015	PF13954	PapC N-terminal domain
AU28_RS01020	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS01020	PF02753	Pili assembly chaperone PapD, C-terminal domain
AU28_RS01025	PF00419	Fimbrial protein
AU28_RS01030	PF00419	Fimbrial protein
AU28_RS01035	PF00419	Fimbrial protein
AU28_RS01040	PF11245	AU28_RS01040
AU28_RS01045	PF00202	Aminotransferase class-III
AU28_RS01050	PF00654	Voltage gated chloride channel
AU28_RS01055	PF01521	Iron-sulphur cluster biosynthesis
AU28_RS01060	PF03458	AU28_RS01060
AU28_RS01065	PF01497	Periplasmic binding protein
AU28_RS01070	PF01048	Phosphorylase superfamily
AU28_RS01075	PF01966	HD domain
AU28_RS01075	PF13286	Phosphohydrolase-associated domain
AU28_RS01080	PF00595	PDZ domain (Also known as DHR or GLGF)
AU28_RS01080	PF13365	Trypsin-like peptidase domain
AU28_RS01085	PF05651	AU28_RS01085
AU28_RS01085	PF13556	PucR C-terminal helix-turn-helix domain
AU28_RS01090	PF03272	AU28_RS01090
AU28_RS01090	PF13402	Peptidase M60-like family
AU28_RS01095	PF11944	AU28_RS01095
AU28_RS01100	PF00083	Sugar (and other) transporter
AU28_RS01105	PF00132	Bacterial transferase hexapeptide (six repeats)
AU28_RS01105	PF14602	Hexapeptide repeat of succinyl-transferase
AU28_RS01105	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
AU28_RS01110	PF01842	ACT domain
AU28_RS01110	PF01909	Nucleotidyltransferase domain
AU28_RS01110	PF01966	HD domain
AU28_RS01110	PF08335	GlnD PII-uridylyltransferase
AU28_RS01115	PF00557	Metallopeptidase family M24
AU28_RS01120	PF00318	Ribosomal protein S2
AU28_RS01125	PF00889	Elongation factor TS
AU28_RS01130	PF00696	Amino acid kinase family
AU28_RS01135	PF01765	Ribosome recycling factor
AU28_RS01140	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
AU28_RS01140	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
AU28_RS01140	PF13288	DXP reductoisomerase C-terminal domain
AU28_RS01145	PF01255	Putative undecaprenyl diphosphate synthase
AU28_RS01150	PF01148	Cytidylyltransferase family
AU28_RS01155	PF00595	PDZ domain (Also known as DHR or GLGF)
AU28_RS01155	PF02163	Peptidase family M50
AU28_RS01160	PF01103	Surface antigen
AU28_RS01160	PF07244	Surface antigen variable number repeat
AU28_RS01165	PF03938	Outer membrane protein (OmpH-like)
AU28_RS01170	PF00132	Bacterial transferase hexapeptide (six repeats)
AU28_RS01170	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
AU28_RS01170	PF14602	Hexapeptide repeat of succinyl-transferase
AU28_RS01175	PF07977	FabA-like domain
AU28_RS01180	PF00132	Bacterial transferase hexapeptide (six repeats)
AU28_RS01180	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
AU28_RS01185	PF02684	AU28_RS01185
AU28_RS01190	PF01351	Ribonuclease HII
AU28_RS01195	PF01336	OB-fold nucleic acid binding domain
AU28_RS01195	PF02811	PHP domain
AU28_RS01195	PF07733	Bacterial DNA polymerase III alpha subunit
AU28_RS01195	PF14579	Helix-hairpin-helix motif
AU28_RS01200	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
AU28_RS01205	PF00182	Chitinase class I
AU28_RS01210	PF01276	Orn/Lys/Arg decarboxylase, major domain
AU28_RS01210	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AU28_RS01210	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AU28_RS01215	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AU28_RS01220	PF01171	PP-loop family
AU28_RS01220	PF09179	TilS substrate binding domain
AU28_RS01220	PF11734	TilS substrate C-terminal domain
AU28_RS01225	PF07073	Modulator of Rho-dependent transcription termination (ROF)
AU28_RS01230	PF06786	AU28_RS01230
AU28_RS01235	PF07152	YaeQ protein
AU28_RS01240	PF00472	RF-1 domain
AU28_RS01245	PF04170	NlpE N-terminal domain
AU28_RS01245	PF17185	AU28_RS01245
AU28_RS01250	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AU28_RS01250	PF03129	Anticodon binding domain
AU28_RS01250	PF04073	Aminoacyl-tRNA editing domain
AU28_RS01255	PF01980	Uncharacterised protein family UPF0066
AU28_RS01260	PF16358	AU28_RS01260
AU28_RS01265	PF03180	NLPA lipoprotein
AU28_RS01270	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS01275	PF00005	ABC transporter
AU28_RS01275	PF09383	NIL domain
AU28_RS01280	PF13242	HAD-hyrolase-like
AU28_RS01315	PF00248	Aldo/keto reductase family
AU28_RS01320	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS01320	PF03466	LysR substrate binding domain
AU28_RS01325	PF07690	Major Facilitator Superfamily
AU28_RS01330	PF03372	Endonuclease/Exonuclease/phosphatase family
AU28_RS01335	PF08241	Methyltransferase domain
AU28_RS01340	PF01464	Transglycosylase SLT domain
AU28_RS01340	PF01476	LysM domain
AU28_RS01345	PF00753	Metallo-beta-lactamase superfamily
AU28_RS01345	PF16123	AU28_RS01345
AU28_RS01350	PF08241	Methyltransferase domain
AU28_RS01355	PF00075	RNase H
AU28_RS01360	PF00929	Exonuclease
AU28_RS01375	PF06812	AU28_RS01375
AU28_RS01380	PF06996	AU28_RS01380
AU28_RS01385	PF09961	AU28_RS01385
AU28_RS01390	PF10908	AU28_RS01390
AU28_RS01395	PF05954	Phage late control gene D protein (GPD)
AU28_RS01400	PF03527	AU28_RS01400
AU28_RS01400	PF05593	AU28_RS01400
AU28_RS01410	PF08845	AU28_RS01410
AU28_RS01430	PF08845	AU28_RS01430
AU28_RS01435	PF13683	AU28_RS01435
AU28_RS01440	PF09460	Saf-pilin pilus formation protein
AU28_RS01445	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS01445	PF02753	Pili assembly chaperone PapD, C-terminal domain
AU28_RS01450	PF00577	Outer membrane usher protein
AU28_RS01450	PF13953	PapC C-terminal domain
AU28_RS01450	PF13954	PapC N-terminal domain
AU28_RS01455	PF05775	Enterobacteria AfaD invasin protein
AU28_RS01460	PF01522	Polysaccharide deacetylase
AU28_RS01465	PF06069	AU28_RS01465
AU28_RS01470	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS01470	PF03466	LysR substrate binding domain
AU28_RS01480	PF13505	Outer membrane protein beta-barrel domain
AU28_RS01490	PF00795	Carbon-nitrogen hydrolase
AU28_RS01495	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AU28_RS01495	PF02770	Acyl-CoA dehydrogenase, middle domain
AU28_RS01495	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AU28_RS01495	PF09317	AU28_RS01495
AU28_RS01500	PF13580	SIS domain
AU28_RS01505	PF13230	Glutamine amidotransferases class-II
AU28_RS01510	PF03734	L,D-transpeptidase catalytic domain
AU28_RS01515	PF00817	impB/mucB/samB family
AU28_RS01515	PF11798	IMS family HHH motif
AU28_RS01515	PF11799	impB/mucB/samB family C-terminal domain
AU28_RS01520	PF01139	tRNA-splicing ligase RtcB
AU28_RS01525	PF00472	RF-1 domain
AU28_RS01530	PF01546	Peptidase family M20/M25/M40
AU28_RS01530	PF07687	Peptidase dimerisation domain
AU28_RS01535	PF00156	Phosphoribosyl transferase domain
AU28_RS01540	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
AU28_RS01545	PF07417	Transcriptional regulator Crl
AU28_RS01550	PF00267	Gram-negative porin
AU28_RS01555	PF00696	Amino acid kinase family
AU28_RS01555	PF01472	PUA domain
AU28_RS01560	PF00171	Aldehyde dehydrogenase family
AU28_RS01570	PF13276	AU28_RS01570
AU28_RS01575	PF01527	Transposase
AU28_RS01580	PF08841	Diol dehydratase reactivase ATPase-like domain
AU28_RS01585	PF08986	Domain of unknown function (DUF1889)
AU28_RS01590	PF07690	Major Facilitator Superfamily
AU28_RS01595	PF00330	Aconitase family (aconitate hydratase)
AU28_RS01600	PF00694	Aconitase C-terminal domain
AU28_RS01605	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AU28_RS01610	PF00561	alpha/beta hydrolase fold
AU28_RS01615	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS01615	PF03466	LysR substrate binding domain
AU28_RS01630	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS01630	PF02753	Pili assembly chaperone PapD, C-terminal domain
AU28_RS01635	PF00419	Fimbrial protein
AU28_RS01640	PF00577	Outer membrane usher protein
AU28_RS01640	PF13953	PapC C-terminal domain
AU28_RS01640	PF13954	PapC N-terminal domain
AU28_RS01645	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS01645	PF02753	Pili assembly chaperone PapD, C-terminal domain
AU28_RS01650	PF00419	Fimbrial protein
AU28_RS01665	PF00563	EAL domain
AU28_RS01665	PF12792	AU28_RS01665
AU28_RS01680	PF13505	Outer membrane protein beta-barrel domain
AU28_RS01695	PF13698	AU28_RS01695
AU28_RS01700	PF02321	Outer membrane efflux protein
AU28_RS01705	PF00873	AcrB/AcrD/AcrF family
AU28_RS01710	PF16576	AU28_RS01710
AU28_RS01715	PF00122	E1-E2 ATPase
AU28_RS01715	PF00403	Heavy-metal-associated domain
AU28_RS01715	PF00702	haloacid dehalogenase-like hydrolase
AU28_RS01720	PF00376	MerR family regulatory protein
AU28_RS01720	PF09278	MerR, DNA binding
AU28_RS01725	PF00403	Heavy-metal-associated domain
AU28_RS01735	PF07690	Major Facilitator Superfamily
AU28_RS01740	PF01555	DNA methylase
AU28_RS01745	PF04851	Type III restriction enzyme, res subunit
AU28_RS01745	PF08774	VRR-NUC domain
AU28_RS01755	PF01654	AU28_RS01755
AU28_RS01760	PF02322	AU28_RS01760
AU28_RS01765	PF10617	AU28_RS01765
AU28_RS01770	PF12833	Helix-turn-helix domain
AU28_RS01775	PF00593	TonB dependent receptor
AU28_RS01775	PF07715	TonB-dependent Receptor Plug Domain
AU28_RS01780	PF01810	AU28_RS01780
AU28_RS01785	PF07338	Protein of unknown function (DUF1471)
AU28_RS01790	PF00158	Sigma-54 interaction domain
AU28_RS01790	PF02954	Bacterial regulatory protein, Fis family
AU28_RS01790	PF06506	Propionate catabolism activator
AU28_RS01795	PF13714	Phosphoenolpyruvate phosphomutase
AU28_RS01800	PF00285	Citrate synthase
AU28_RS01805	PF03972	MmgE/PrpD family
AU28_RS01810	PF00501	AMP-binding enzyme
AU28_RS01810	PF13193	AMP-binding enzyme C-terminal domain
AU28_RS01810	PF16177	AU28_RS01810
AU28_RS01815	PF00490	Delta-aminolevulinic acid dehydratase
AU28_RS01820	PF03797	Autotransporter beta-domain
AU28_RS01825	PF15977	AU28_RS01825
AU28_RS01830	PF00144	Beta-lactamase
AU28_RS01835	PF05992	AU28_RS01835
AU28_RS01840	PF07759	AU28_RS01840
AU28_RS01845	PF10954	AU28_RS01845
AU28_RS01850	PF10953	AU28_RS01850
AU28_RS01855	PF01820	D-ala D-ala ligase N-terminus
AU28_RS01855	PF07478	D-ala D-ala ligase C-terminus
AU28_RS01860	PF06904	AU28_RS01860
AU28_RS01865	PF07690	Major Facilitator Superfamily
AU28_RS01870	PF10796	AU28_RS01870
AU28_RS01875	PF07769	AU28_RS01875
AU28_RS01880	PF00990	GGDEF domain
AU28_RS01880	PF05230	AU28_RS01880
AU28_RS01885	PF03807	NADP oxidoreductase coenzyme F420-dependent
AU28_RS01885	PF14748	Pyrroline-5-carboxylate reductase dimerisation
AU28_RS01890	PF02639	AU28_RS01890
AU28_RS01895	PF01202	Shikimate kinase
AU28_RS01900	PF16362	AU28_RS01900
AU28_RS01905	PF07302	AU28_RS01905
AU28_RS01910	PF06865	Protein of unknown function (DUF1255)
AU28_RS01915	PF04381	Putative exonuclease, RdgC
AU28_RS01920	PF00480	ROK family
AU28_RS01925	PF07690	Major Facilitator Superfamily
AU28_RS01930	PF13476	AAA domain
AU28_RS01930	PF13558	Putative exonuclease SbcCD, C subunit
AU28_RS01935	PF00149	Calcineurin-like phosphoesterase
AU28_RS01935	PF12320	Type 5 capsule protein repressor C-terminal domain
AU28_RS01945	PF00072	Response regulator receiver domain
AU28_RS01945	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS01950	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS01950	PF00989	PAS fold
AU28_RS01950	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS01950	PF11808	AU28_RS01950
AU28_RS01955	PF05525	AU28_RS01955
AU28_RS01960	PF00324	Amino acid permease
AU28_RS01965	PF00128	Alpha amylase, catalytic domain
AU28_RS01965	PF02903	Alpha amylase, N-terminal ig-like domain
AU28_RS01970	PF00578	AhpC/TSA family
AU28_RS01970	PF10417	C-terminal domain of 1-Cys peroxiredoxin
AU28_RS01975	PF04336	AU28_RS01975
AU28_RS01980	PF02547	Queuosine biosynthesis protein
AU28_RS01985	PF01702	Queuine tRNA-ribosyltransferase
AU28_RS01990	PF02699	Preprotein translocase subunit
AU28_RS01995	PF02355	Protein export membrane protein
AU28_RS01995	PF07549	SecD/SecF GG Motif
AU28_RS01995	PF13721	SecD export protein N-terminal TM region
AU28_RS02000	PF02355	Protein export membrane protein
AU28_RS02000	PF07549	SecD/SecF GG Motif
AU28_RS02005	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AU28_RS02010	PF08279	HTH domain
AU28_RS02010	PF13280	AU28_RS02010
AU28_RS02015	PF01844	HNH endonuclease
AU28_RS02020	PF13940	AU28_RS02020
AU28_RS02025	PF03502	Nucleoside-specific channel-forming protein, Tsx
AU28_RS02030	PF11622	Protein of unknown function (DUF3251)
AU28_RS02035	PF03477	ATP cone domain
AU28_RS02040	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AU28_RS02040	PF01872	RibD C-terminal domain
AU28_RS02045	PF00885	6,7-dimethyl-8-ribityllumazine synthase
AU28_RS02050	PF01029	NusB family
AU28_RS02055	PF00586	AIR synthase related protein, N-terminal domain
AU28_RS02055	PF02769	AIR synthase related protein, C-terminal domain
AU28_RS02060	PF04608	Phosphatidylglycerophosphatase A
AU28_RS02065	PF00248	Aldo/keto reductase family
AU28_RS02070	PF02779	Transketolase, pyrimidine binding domain
AU28_RS02070	PF02780	Transketolase, C-terminal domain
AU28_RS02070	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
AU28_RS02075	PF00348	Polyprenyl synthetase
AU28_RS02080	PF02609	Exonuclease VII small subunit
AU28_RS02085	PF02568	Thiamine biosynthesis protein (ThiI)
AU28_RS02085	PF02926	THUMP domain
AU28_RS02090	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS02095	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS02100	PF00005	ABC transporter
AU28_RS02100	PF08402	TOBE domain
AU28_RS02105	PF13343	Bacterial extracellular solute-binding protein
AU28_RS02110	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS02110	PF07702	UTRA domain
AU28_RS02115	PF00266	Aminotransferase class-V
AU28_RS02125	PF01965	DJ-1/PfpI family
AU28_RS02130	PF02558	Ketopantoate reductase PanE/ApbA
AU28_RS02130	PF08546	Ketopantoate reductase PanE/ApbA C terminal
AU28_RS02135	PF04461	Protein of unknown function (DUF520)
AU28_RS02140	PF07690	Major Facilitator Superfamily
AU28_RS02145	PF08238	Sel1 repeat
AU28_RS02150	PF08238	Sel1 repeat
AU28_RS02155	PF01040	UbiA prenyltransferase family
AU28_RS02160	PF03626	AU28_RS02160
AU28_RS02165	PF00510	Cytochrome c oxidase subunit III
AU28_RS02170	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AU28_RS02175	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
AU28_RS02175	PF06481	COX Aromatic Rich Motif
AU28_RS02180	PF07690	Major Facilitator Superfamily
AU28_RS02185	PF03923	AU28_RS02185
AU28_RS02185	PF08139	AU28_RS02185
AU28_RS02190	PF01722	BolA-like protein
AU28_RS02195	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AU28_RS02195	PF05697	Bacterial trigger factor protein (TF)
AU28_RS02195	PF05698	Bacterial trigger factor protein (TF) C-terminus
AU28_RS02200	PF00574	Clp protease
AU28_RS02205	PF06689	ClpX C4-type zinc finger
AU28_RS02205	PF07724	AAA domain (Cdc48 subfamily)
AU28_RS02205	PF10431	C-terminal, D2-small domain, of ClpB protein
AU28_RS02210	PF00004	ATPase family associated with various cellular activities (AAA)
AU28_RS02210	PF02190	ATP-dependent protease La (LON) domain
AU28_RS02210	PF05362	Lon protease (S16) C-terminal proteolytic domain
AU28_RS02215	PF00216	Bacterial DNA-binding protein
AU28_RS02220	PF13145	PPIC-type PPIASE domain
AU28_RS02220	PF13624	SurA N-terminal domain
AU28_RS02225	PF12836	Helix-hairpin-helix motif
AU28_RS02230	PF13279	Thioesterase-like superfamily
AU28_RS02235	PF06508	Queuosine biosynthesis protein QueC
AU28_RS02240	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AU28_RS02240	PF12793	AU28_RS02240
AU28_RS02245	PF08282	haloacid dehalogenase-like hydrolase
AU28_RS02250	PF00291	Pyridoxal-phosphate dependent enzyme
AU28_RS02255	PF01037	AsnC family
AU28_RS02255	PF13412	Winged helix-turn-helix DNA-binding
AU28_RS02260	PF00005	ABC transporter
AU28_RS02260	PF00664	ABC transporter transmembrane region
AU28_RS02265	PF00005	ABC transporter
AU28_RS02265	PF00664	ABC transporter transmembrane region
AU28_RS02270	PF00543	Nitrogen regulatory protein P-II
AU28_RS02275	PF00909	Ammonium Transporter Family
AU28_RS02280	PF13622	Thioesterase-like superfamily
AU28_RS02285	PF09619	Type III secretion system lipoprotein chaperone (YscW)
AU28_RS02290	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AU28_RS02295	PF00563	EAL domain
AU28_RS02295	PF12792	AU28_RS02295
AU28_RS02300	PF01197	Ribosomal protein L31
AU28_RS02305	PF00444	Ribosomal protein L36
AU28_RS02310	PF10777	AU28_RS02310
AU28_RS02315	PF12464	Maltose acetyltransferase
AU28_RS02315	PF14602	Hexapeptide repeat of succinyl-transferase
AU28_RS02320	PF05321	Haemolysin expression modulating protein
AU28_RS02325	PF10757	AU28_RS02325
AU28_RS02330	PF00873	AcrB/AcrD/AcrF family
AU28_RS02335	PF00529	HlyD family secretion protein
AU28_RS02335	PF16576	AU28_RS02335
AU28_RS02340	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS02340	PF08361	MAATS-type transcriptional repressor, C-terminal region
AU28_RS02345	PF00924	Mechanosensitive ion channel
AU28_RS02345	PF12794	AU28_RS02345
AU28_RS02345	PF12795	AU28_RS02345
AU28_RS02350	PF04754	AU28_RS02350
AU28_RS02355	PF10689	AU28_RS02355
AU28_RS02360	PF07445	Primosomal replication protein priB and priC
AU28_RS02365	PF04304	AU28_RS02365
AU28_RS02370	PF00156	Phosphoribosyl transferase domain
AU28_RS02375	PF12168	AU28_RS02375
AU28_RS02375	PF12169	DNA polymerase III subunits gamma and tau domain III
AU28_RS02375	PF12170	DNA polymerase III tau subunit V interacting with alpha
AU28_RS02375	PF13177	DNA polymerase III, delta subunit
AU28_RS02380	PF02575	YbaB/EbfC DNA-binding family
AU28_RS02385	PF02132	RecR protein
AU28_RS02385	PF13662	Toprim domain
AU28_RS02390	PF00183	Hsp90 protein
AU28_RS02390	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS02395	PF00406	Adenylate kinase
AU28_RS02395	PF05191	Adenylate kinase, active site lid
AU28_RS02400	PF00762	Ferrochelatase
AU28_RS02405	PF07859	alpha/beta hydrolase fold
AU28_RS02410	PF00294	pfkB family carbohydrate kinase
AU28_RS02415	PF00999	Sodium/hydrogen exchanger family
AU28_RS02415	PF02254	TrkA-N domain
AU28_RS02420	PF07690	Major Facilitator Superfamily
AU28_RS02430	PF04073	Aminoacyl-tRNA editing domain
AU28_RS02435	PF01963	AU28_RS02435
AU28_RS02440	PF07007	Protein of unknown function (DUF1311)
AU28_RS02445	PF00122	E1-E2 ATPase
AU28_RS02445	PF00403	Heavy-metal-associated domain
AU28_RS02445	PF00702	haloacid dehalogenase-like hydrolase
AU28_RS02450	PF13411	MerR HTH family regulatory protein
AU28_RS02455	PF01957	NfeD-like C-terminal, partner-binding
AU28_RS02460	PF01145	SPFH domain / Band 7 family
AU28_RS02465	PF00005	ABC transporter
AU28_RS02470	PF03649	AU28_RS02470
AU28_RS02475	PF00085	Thioredoxin
AU28_RS02475	PF14559	Tetratricopeptide repeat
AU28_RS02475	PF14561	Tetratricopeptide repeat
AU28_RS02480	PF00106	short chain dehydrogenase
AU28_RS02485	PF13472	GDSL-like Lipase/Acylhydrolase family
AU28_RS02490	PF00005	ABC transporter
AU28_RS02495	PF02687	AU28_RS02495
AU28_RS02505	PF03180	NLPA lipoprotein
AU28_RS02510	PF00005	ABC transporter
AU28_RS02510	PF09383	NIL domain
AU28_RS02515	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS02525	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS02525	PF03466	LysR substrate binding domain
AU28_RS02530	PF04115	Ureidoglycolate hydrolase
AU28_RS02535	PF01614	Bacterial transcriptional regulator
AU28_RS02535	PF09339	IclR helix-turn-helix domain
AU28_RS02540	PF00205	Thiamine pyrophosphate enzyme, central domain
AU28_RS02540	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AU28_RS02540	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AU28_RS02545	PF01261	Xylose isomerase-like TIM barrel
AU28_RS02550	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AU28_RS02550	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AU28_RS02555	PF07690	Major Facilitator Superfamily
AU28_RS02560	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
AU28_RS02565	PF01979	Amidohydrolase family
AU28_RS02570	PF00860	Permease family
AU28_RS02575	PF02595	Glycerate kinase family
AU28_RS02580	PF05899	Protein of unknown function (DUF861)
AU28_RS02580	PF07883	Cupin domain
AU28_RS02585	PF01546	Peptidase family M20/M25/M40
AU28_RS02590	PF02615	Malate/L-lactate dehydrogenase
AU28_RS02595	PF00549	CoA-ligase
AU28_RS02595	PF02629	CoA binding domain
AU28_RS02600	PF06545	Protein of unknown function (DUF1116)
AU28_RS02605	PF11392	AU28_RS02605
AU28_RS02610	PF00696	Amino acid kinase family
AU28_RS02615	PF02222	ATP-grasp domain
AU28_RS02620	PF00731	AIR carboxylase
AU28_RS02625	PF12850	Calcineurin-like phosphoesterase superfamily domain
AU28_RS02630	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AU28_RS02635	PF01406	tRNA synthetases class I (C) catalytic domain
AU28_RS02635	PF09190	DALR domain
AU28_RS02640	PF09916	AU28_RS02640
AU28_RS02650	PF04307	AU28_RS02650
AU28_RS02655	PF13275	S4 domain
AU28_RS02660	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
AU28_RS02660	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
AU28_RS02665	PF00419	Fimbrial protein
AU28_RS02670	PF00419	Fimbrial protein
AU28_RS02675	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS02675	PF02753	Pili assembly chaperone PapD, C-terminal domain
AU28_RS02680	PF00577	Outer membrane usher protein
AU28_RS02680	PF13953	PapC C-terminal domain
AU28_RS02680	PF13954	PapC N-terminal domain
AU28_RS02685	PF00419	Fimbrial protein
AU28_RS02690	PF00419	Fimbrial protein
AU28_RS02695	PF00072	Response regulator receiver domain
AU28_RS02695	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS02720	PF13333	AU28_RS02720
AU28_RS02730	PF00535	Glycosyl transferase family 2
AU28_RS02735	PF04138	AU28_RS02735
AU28_RS02745	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS02755	PF12833	Helix-turn-helix domain
AU28_RS02755	PF12852	Cupin
AU28_RS02760	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AU28_RS02760	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS02765	PF07338	Protein of unknown function (DUF1471)
AU28_RS02770	PF04224	AU28_RS02770
AU28_RS02780	PF00324	Amino acid permease
AU28_RS02785	PF00924	Mechanosensitive ion channel
AU28_RS02790	PF03797	Autotransporter beta-domain
AU28_RS02795	PF00881	Nitroreductase family
AU28_RS02800	PF04237	YjbR
AU28_RS02805	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS02810	PF12833	Helix-turn-helix domain
AU28_RS02815	PF06643	AU28_RS02815
AU28_RS02820	PF04107	Glutamate-cysteine ligase family 2(GCS2)
AU28_RS02825	PF01648	4'-phosphopantetheinyl transferase superfamily
AU28_RS02830	PF00593	TonB dependent receptor
AU28_RS02830	PF07715	TonB-dependent Receptor Plug Domain
AU28_RS02835	PF00756	Putative esterase
AU28_RS02835	PF11806	Domain of unknown function (DUF3327)
AU28_RS02840	PF03621	MbtH-like protein
AU28_RS02845	PF00501	AMP-binding enzyme
AU28_RS02845	PF00550	Phosphopantetheine attachment site
AU28_RS02845	PF00668	Condensation domain
AU28_RS02845	PF00975	Thioesterase domain
AU28_RS02850	PF02706	Chain length determinant protein
AU28_RS02855	PF00005	ABC transporter
AU28_RS02860	PF01032	FecCD transport family
AU28_RS02865	PF01032	FecCD transport family
AU28_RS02870	PF05977	Transmembrane secretion effector
AU28_RS02875	PF01497	Periplasmic binding protein
AU28_RS02880	PF00425	chorismate binding enzyme
AU28_RS02885	PF00501	AMP-binding enzyme
AU28_RS02885	PF13193	AMP-binding enzyme C-terminal domain
AU28_RS02890	PF00550	Phosphopantetheine attachment site
AU28_RS02890	PF00857	Isochorismatase family
AU28_RS02895	PF13561	Enoyl-(Acyl carrier protein) reductase
AU28_RS02900	PF03061	Thioesterase superfamily
AU28_RS02905	PF02554	AU28_RS02905
AU28_RS02905	PF13722	AU28_RS02905
AU28_RS02910	PF04328	AU28_RS02910
AU28_RS02915	PF00465	Iron-containing alcohol dehydrogenase
AU28_RS02920	PF00155	Aminotransferase class I and II
AU28_RS02925	PF02195	ParB-like nuclease domain
AU28_RS02930	PF01507	Phosphoadenosine phosphosulfate reductase family
AU28_RS02930	PF11922	AU28_RS02930
AU28_RS02935	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS02935	PF03466	LysR substrate binding domain
AU28_RS02940	PF13098	Thioredoxin-like domain
AU28_RS02945	PF00578	AhpC/TSA family
AU28_RS02945	PF10417	C-terminal domain of 1-Cys peroxiredoxin
AU28_RS02950	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS02950	PF13192	Thioredoxin domain
AU28_RS02955	PF02613	Nitrate reductase delta subunit
AU28_RS02960	PF00384	Molybdopterin oxidoreductase
AU28_RS02960	PF01568	Molydopterin dinucleotide binding domain
AU28_RS02960	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AU28_RS02960	PF10518	TAT (twin-arginine translocation) pathway signal sequence
AU28_RS02965	PF12800	4Fe-4S binding domain
AU28_RS02965	PF13247	4Fe-4S dicluster domain
AU28_RS02970	PF04976	AU28_RS02970
AU28_RS02975	PF00582	Universal stress protein family
AU28_RS02980	PF00107	Zinc-binding dehydrogenase
AU28_RS02980	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS02980	PF13823	Alcohol dehydrogenase GroES-associated
AU28_RS02985	PF01272	Transcription elongation factor, GreA/GreB, C-term
AU28_RS02985	PF14760	Rnk N-terminus
AU28_RS02990	PF00445	Ribonuclease T2 family
AU28_RS02995	PF00939	Sodium:sulfate symporter transmembrane region
AU28_RS03000	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
AU28_RS03005	PF03802	AU28_RS03005
AU28_RS03010	PF04223	Citrate lyase, alpha subunit (CitF)
AU28_RS03015	PF03328	HpcH/HpaI aldolase/citrate lyase family
AU28_RS03020	PF06857	AU28_RS03020
AU28_RS03025	PF08218	Citrate lyase ligase C-terminal domain
AU28_RS03030	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS03030	PF13188	PAS domain
AU28_RS03030	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AU28_RS03030	PF17203	AU28_RS03030
AU28_RS03035	PF00072	Response regulator receiver domain
AU28_RS03035	PF12431	AU28_RS03035
AU28_RS03040	PF03606	AU28_RS03040
AU28_RS03045	PF07017	Antimicrobial peptide resistance and lipid A acylation protein PagP
AU28_RS03050	PF00313	'Cold-shock' DNA-binding domain
AU28_RS03055	PF02537	AU28_RS03055
AU28_RS03060	PF00795	Carbon-nitrogen hydrolase
AU28_RS03065	PF02416	mttA/Hcf106 family
AU28_RS03070	PF04055	Radical SAM superfamily
AU28_RS03070	PF16881	AU28_RS03070
AU28_RS03075	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS03075	PF03466	LysR substrate binding domain
AU28_RS03080	PF03099	Biotin/lipoate A/B protein ligase family
AU28_RS03085	PF04359	Protein of unknown function (DUF493)
AU28_RS03090	PF00768	D-alanyl-D-alanine carboxypeptidase
AU28_RS03090	PF07943	Penicillin-binding protein 5, C-terminal domain
AU28_RS03095	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
AU28_RS03095	PF05036	Sporulation related domain
AU28_RS03100	PF01098	AU28_RS03100
AU28_RS03105	PF00905	Penicillin binding protein transpeptidase domain
AU28_RS03105	PF03717	Penicillin-binding Protein dimerisation domain
AU28_RS03110	PF02590	Predicted SPOUT methyltransferase
AU28_RS03115	PF02410	Oligomerisation domain
AU28_RS03125	PF00300	Histidine phosphatase superfamily (branch 1)
AU28_RS03130	PF00155	Aminotransferase class I and II
AU28_RS03135	PF01467	Cytidylyltransferase
AU28_RS03140	PF06144	DNA polymerase III, delta subunit
AU28_RS03140	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
AU28_RS03145	PF04390	Lipopolysaccharide-assembly
AU28_RS03150	PF00133	tRNA synthetases class I (I, L, M and V)
AU28_RS03150	PF08264	Anticodon-binding domain of tRNA
AU28_RS03150	PF13603	Leucyl-tRNA synthetase, Domain 2
AU28_RS03155	PF08666	SAF domain
AU28_RS03160	PF04295	AU28_RS03160
AU28_RS03165	PF03812	AU28_RS03165
AU28_RS03170	PF00158	Sigma-54 interaction domain
AU28_RS03170	PF06506	Propionate catabolism activator
AU28_RS03175	PF07295	AU28_RS03175
AU28_RS03180	PF08238	Sel1 repeat
AU28_RS03185	PF06889	AU28_RS03185
AU28_RS03195	PF06889	AU28_RS03195
AU28_RS03205	PF00012	Hsp70 protein
AU28_RS03215	PF01156	Inosine-uridine preferring nucleoside hydrolase
AU28_RS03220	PF00005	ABC transporter
AU28_RS03225	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS03230	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS03235	PF00497	Bacterial extracellular solute-binding proteins, family 3
AU28_RS03240	PF00795	Carbon-nitrogen hydrolase
AU28_RS03245	PF00571	CBS domain
AU28_RS03245	PF03471	Transporter associated domain
AU28_RS03250	PF02130	Uncharacterized protein family UPF0054
AU28_RS03255	PF02562	PhoH-like protein
AU28_RS03260	PF00919	Uncharacterized protein family UPF0004
AU28_RS03260	PF01938	TRAM domain
AU28_RS03260	PF04055	Radical SAM superfamily
AU28_RS03265	PF01494	FAD binding domain
AU28_RS03310	PF00733	Asparagine synthase
AU28_RS03310	PF13537	Glutamine amidotransferase domain
AU28_RS03315	PF13242	HAD-hyrolase-like
AU28_RS03315	PF13344	Haloacid dehalogenase-like hydrolase
AU28_RS03320	PF00480	ROK family
AU28_RS03320	PF01047	MarR family
AU28_RS03325	PF01979	Amidohydrolase family
AU28_RS03330	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AU28_RS03335	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
AU28_RS03335	PF00367	phosphotransferase system, EIIB
AU28_RS03335	PF02378	Phosphotransferase system, EIIC
AU28_RS03340	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AU28_RS03340	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
AU28_RS03345	PF03573	outer membrane porin, OprD family
AU28_RS03350	PF13982	AU28_RS03350
AU28_RS03355	PF07690	Major Facilitator Superfamily
AU28_RS03365	PF00890	FAD binding domain
AU28_RS03370	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS03370	PF03466	LysR substrate binding domain
AU28_RS03375	PF01475	Ferric uptake regulator family
AU28_RS03380	PF00258	Flavodoxin
AU28_RS03385	PF01402	Ribbon-helix-helix protein, copG family
AU28_RS03390	PF12697	Alpha/beta hydrolase family
AU28_RS03395	PF03925	SeqA protein
AU28_RS03400	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AU28_RS03400	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AU28_RS03400	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AU28_RS03400	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AU28_RS03405	PF12900	Pyridoxamine 5'-phosphate oxidase
AU28_RS03410	PF13520	Amino acid permease
AU28_RS03415	PF01276	Orn/Lys/Arg decarboxylase, major domain
AU28_RS03415	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AU28_RS03415	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AU28_RS03425	PF00072	Response regulator receiver domain
AU28_RS03425	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS03430	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS03430	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS03430	PF02702	Osmosensitive K+ channel His kinase sensor domain
AU28_RS03430	PF13493	Domain of unknown function (DUF4118)
AU28_RS03435	PF02669	AU28_RS03435
AU28_RS03440	PF00122	E1-E2 ATPase
AU28_RS03440	PF00702	haloacid dehalogenase-like hydrolase
AU28_RS03445	PF03814	AU28_RS03445
AU28_RS03450	PF09604	AU28_RS03450
AU28_RS03455	PF10725	AU28_RS03455
AU28_RS03460	PF00875	DNA photolyase
AU28_RS03460	PF03441	FAD binding domain of DNA photolyase
AU28_RS03465	PF00854	POT family
AU28_RS03470	PF01784	NIF3 (NGG1p interacting factor 3)
AU28_RS03475	PF02682	Allophanate hydrolase subunit 1
AU28_RS03480	PF02626	Allophanate hydrolase subunit 2
AU28_RS03485	PF03746	LamB/YcsF family
AU28_RS03490	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
AU28_RS03490	PF06827	Zinc finger found in FPG and IleRS
AU28_RS03490	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
AU28_RS03495	PF05145	AU28_RS03495
AU28_RS03500	PF00285	Citrate synthase
AU28_RS03510	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
AU28_RS03515	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
AU28_RS03520	PF00890	FAD binding domain
AU28_RS03520	PF02910	Fumarate reductase flavoprotein C-term
AU28_RS03525	PF13085	2Fe-2S iron-sulfur cluster binding domain
AU28_RS03525	PF13534	4Fe-4S dicluster domain
AU28_RS03530	PF00676	Dehydrogenase E1 component
AU28_RS03530	PF02779	Transketolase, pyrimidine binding domain
AU28_RS03530	PF16078	AU28_RS03530
AU28_RS03530	PF16870	AU28_RS03530
AU28_RS03535	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AU28_RS03535	PF00364	Biotin-requiring enzyme
AU28_RS03535	PF02817	e3 binding domain
AU28_RS03540	PF00549	CoA-ligase
AU28_RS03540	PF08442	ATP-grasp domain
AU28_RS03545	PF00549	CoA-ligase
AU28_RS03545	PF02629	CoA binding domain
AU28_RS03555	PF01654	AU28_RS03555
AU28_RS03560	PF02322	AU28_RS03560
AU28_RS03565	PF08173	AU28_RS03565
AU28_RS03570	PF09600	AU28_RS03570
AU28_RS03575	PF03061	Thioesterase superfamily
AU28_RS03580	PF01618	AU28_RS03580
AU28_RS03585	PF02472	Biopolymer transport protein ExbD/TolR
AU28_RS03590	PF06519	TolA C-terminal
AU28_RS03595	PF04052	TolB amino-terminal domain
AU28_RS03595	PF07676	WD40-like Beta Propeller Repeat
AU28_RS03600	PF00691	OmpA family
AU28_RS03605	PF13174	Tetratricopeptide repeat
AU28_RS03605	PF13432	Tetratricopeptide repeat
AU28_RS03605	PF16331	AU28_RS03605
AU28_RS03635	PF02445	Quinolinate synthetase A protein
AU28_RS03640	PF04973	AU28_RS03640
AU28_RS03645	PF01545	Cation efflux family
AU28_RS03650	PF13985	AU28_RS03650
AU28_RS03655	PF00793	DAHP synthetase I family
AU28_RS03660	PF05683	Fumarase C-terminus
AU28_RS03665	PF05681	AU28_RS03665
AU28_RS03670	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS03670	PF03466	LysR substrate binding domain
AU28_RS03675	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS03675	PF03466	LysR substrate binding domain
AU28_RS03680	PF03600	Citrate transporter
AU28_RS03685	PF04277	AU28_RS03685
AU28_RS03690	PF00364	Biotin-requiring enzyme
AU28_RS03690	PF00682	HMGL-like
AU28_RS03690	PF02436	Conserved carboxylase domain
AU28_RS03695	PF03977	AU28_RS03695
AU28_RS03700	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
AU28_RS03705	PF01032	FecCD transport family
AU28_RS03710	PF00005	ABC transporter
AU28_RS03715	PF00300	Histidine phosphatase superfamily (branch 1)
AU28_RS03725	PF00288	GHMP kinases N terminal domain
AU28_RS03725	PF08544	GHMP kinases C terminal
AU28_RS03725	PF10509	Galactokinase galactose-binding signature
AU28_RS03730	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
AU28_RS03730	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
AU28_RS03735	PF16363	AU28_RS03735
AU28_RS03740	PF09935	AU28_RS03740
AU28_RS03745	PF00005	ABC transporter
AU28_RS03750	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS03750	PF03459	TOBE domain
AU28_RS03755	PF10766	Protein of unknown function (DUF2592)
AU28_RS03760	PF13531	Bacterial extracellular solute-binding protein
AU28_RS03765	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS03770	PF00005	ABC transporter
AU28_RS03770	PF03459	TOBE domain
AU28_RS03775	PF08282	haloacid dehalogenase-like hydrolase
AU28_RS03780	PF10282	Lactonase, 7-bladed beta-propeller
AU28_RS03785	PF01095	Pectinesterase
AU28_RS03790	PF01979	Amidohydrolase family
AU28_RS03795	PF00491	Arginase family
AU28_RS03800	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS03800	PF07702	UTRA domain
AU28_RS03805	PF01175	Urocanase
AU28_RS03810	PF00221	Aromatic amino acid lyase
AU28_RS03815	PF01161	Phosphatidylethanolamine-binding protein
AU28_RS03820	PF00202	Aminotransferase class-III
AU28_RS03825	PF04055	Radical SAM superfamily
AU28_RS03825	PF06968	Biotin and Thiamin Synthesis associated domain
AU28_RS03830	PF00155	Aminotransferase class I and II
AU28_RS03835	PF08241	Methyltransferase domain
AU28_RS03840	PF13500	AAA domain
AU28_RS03845	PF00271	Helicase conserved C-terminal domain
AU28_RS03845	PF02151	UvrB/uvrC motif
AU28_RS03845	PF04851	Type III restriction enzyme, res subunit
AU28_RS03845	PF12344	Ultra-violet resistance protein B
AU28_RS03860	PF01933	Uncharacterised protein family UPF0052
AU28_RS03865	PF04055	Radical SAM superfamily
AU28_RS03865	PF06463	Molybdenum Cofactor Synthesis C
AU28_RS03865	PF13353	4Fe-4S single cluster domain
AU28_RS03870	PF00994	Probable molybdopterin binding domain
AU28_RS03875	PF01967	MoaC family
AU28_RS03880	PF02597	ThiS family
AU28_RS03885	PF02391	MoaE protein
AU28_RS03890	PF01027	Inhibitor of apoptosis-promoting Bax1
AU28_RS03895	PF01027	Inhibitor of apoptosis-promoting Bax1
AU28_RS03910	PF03706	AU28_RS03910
AU28_RS03915	PF13091	PLD-like domain
AU28_RS03920	PF03372	Endonuclease/Exonuclease/phosphatase family
AU28_RS03925	PF11076	AU28_RS03925
AU28_RS03930	PF12698	ABC-2 family transporter protein
AU28_RS03935	PF12698	ABC-2 family transporter protein
AU28_RS03940	PF00005	ABC transporter
AU28_RS03945	PF16576	AU28_RS03945
AU28_RS03950	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS03950	PF09209	Domain of unknown function (DUF1956)
AU28_RS03955	PF00270	DEAD/DEAH box helicase
AU28_RS03955	PF00271	Helicase conserved C-terminal domain
AU28_RS03960	PF00270	DEAD/DEAH box helicase
AU28_RS03960	PF06733	DEAD_2
AU28_RS03960	PF13307	Helicase C-terminal domain
AU28_RS03965	PF02885	Glycosyl transferase family, helical bundle domain
AU28_RS03970	PF07338	Protein of unknown function (DUF1471)
AU28_RS03980	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AU28_RS03985	PF05971	Protein of unknown function (DUF890)
AU28_RS03990	PF00924	Mechanosensitive ion channel
AU28_RS03995	PF00005	ABC transporter
AU28_RS04000	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS04005	PF00497	Bacterial extracellular solute-binding proteins, family 3
AU28_RS04010	PF00210	Ferritin-like domain
AU28_RS04015	PF00892	EamA-like transporter family
AU28_RS04020	PF13505	Outer membrane protein beta-barrel domain
AU28_RS04025	PF00884	Sulfatase
AU28_RS04030	PF01325	Iron dependent repressor, N-terminal DNA binding domain
AU28_RS04030	PF02742	Iron dependent repressor, metal binding and dimerisation domain
AU28_RS04035	PF03600	Citrate transporter
AU28_RS04040	PF03734	L,D-transpeptidase catalytic domain
AU28_RS04045	PF00005	ABC transporter
AU28_RS04045	PF12848	ABC transporter
AU28_RS04050	PF14080	AU28_RS04050
AU28_RS04060	PF07350	Protein of unknown function (DUF1479)
AU28_RS04065	PF08282	haloacid dehalogenase-like hydrolase
AU28_RS04070	PF01228	Glycine radical
AU28_RS04070	PF02901	Pyruvate formate lyase
AU28_RS04075	PF04055	Radical SAM superfamily
AU28_RS04075	PF13353	4Fe-4S single cluster domain
AU28_RS04080	PF00899	ThiF family
AU28_RS04085	PF00994	Probable molybdopterin binding domain
AU28_RS04085	PF03453	MoeA N-terminal region (domain I and II)
AU28_RS04085	PF03454	MoeA C-terminal region (domain IV)
AU28_RS04090	PF01112	Asparaginase
AU28_RS04095	PF00005	ABC transporter
AU28_RS04095	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AU28_RS04100	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AU28_RS04105	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS04110	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS04110	PF12911	AU28_RS04110
AU28_RS04115	PF00919	Uncharacterized protein family UPF0004
AU28_RS04115	PF04055	Radical SAM superfamily
AU28_RS04120	PF10799	AU28_RS04120
AU28_RS04125	PF03328	HpcH/HpaI aldolase/citrate lyase family
AU28_RS04130	PF01012	Electron transfer flavoprotein domain
AU28_RS04135	PF00766	Electron transfer flavoprotein FAD-binding domain
AU28_RS04135	PF01012	Electron transfer flavoprotein domain
AU28_RS04145	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AU28_RS04145	PF02770	Acyl-CoA dehydrogenase, middle domain
AU28_RS04145	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AU28_RS04150	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
AU28_RS04150	PF13450	NAD(P)-binding Rossmann-like domain
AU28_RS04155	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS04155	PF03466	LysR substrate binding domain
AU28_RS04165	PF03811	AU28_RS04165
AU28_RS04165	PF07995	Glucose / Sorbosone dehydrogenase
AU28_RS04170	PF07995	Glucose / Sorbosone dehydrogenase
AU28_RS04175	PF13410	Glutathione S-transferase, C-terminal domain
AU28_RS04175	PF13417	Glutathione S-transferase, N-terminal domain
AU28_RS04180	PF00768	D-alanyl-D-alanine carboxypeptidase
AU28_RS04180	PF07943	Penicillin-binding protein 5, C-terminal domain
AU28_RS04185	PF00455	AU28_RS04185
AU28_RS04185	PF08220	DeoR-like helix-turn-helix domain
AU28_RS04190	PF01569	PAP2 superfamily
AU28_RS04195	PF07690	Major Facilitator Superfamily
AU28_RS04200	PF08282	haloacid dehalogenase-like hydrolase
AU28_RS04205	PF07690	Major Facilitator Superfamily
AU28_RS04210	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS04215	PF02080	TrkA-C domain
AU28_RS04215	PF06826	AU28_RS04215
AU28_RS04220	PF11045	AU28_RS04220
AU28_RS04225	PF00462	Glutaredoxin
AU28_RS04230	PF07214	AU28_RS04230
AU28_RS04235	PF00881	Nitroreductase family
AU28_RS04240	PF08443	RimK-like ATP-grasp domain
AU28_RS04245	PF10722	Putative bacterial sensory transduction regulator
AU28_RS04250	PF13416	Bacterial extracellular solute-binding protein
AU28_RS04255	PF00005	ABC transporter
AU28_RS04255	PF08402	TOBE domain
AU28_RS04260	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS04265	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS04270	PF10767	AU28_RS04270
AU28_RS04275	PF05958	tRNA (Uracil-5-)-methyltransferase
AU28_RS04280	PF03611	AU28_RS04280
AU28_RS04285	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AU28_RS04290	PF00884	Sulfatase
AU28_RS04295	PF00497	Bacterial extracellular solute-binding proteins, family 3
AU28_RS04300	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS04305	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS04310	PF00497	Bacterial extracellular solute-binding proteins, family 3
AU28_RS04315	PF00005	ABC transporter
AU28_RS04320	PF12883	Protein of unknown function (DUF3828)
AU28_RS04325	PF01906	Putative heavy-metal-binding
AU28_RS04330	PF01510	N-acetylmuramoyl-L-alanine amidase
AU28_RS04335	PF01370	NAD dependent epimerase/dehydratase family
AU28_RS04340	PF11066	AU28_RS04340
AU28_RS04340	PF13460	NADH(P)-binding
AU28_RS04345	PF01212	Beta-eliminating lyase
AU28_RS04350	PF00205	Thiamine pyrophosphate enzyme, central domain
AU28_RS04350	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AU28_RS04350	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AU28_RS04355	PF00111	2Fe-2S iron-sulfur cluster binding domain
AU28_RS04355	PF00175	Oxidoreductase NAD-binding domain
AU28_RS04355	PF00970	Oxidoreductase FAD-binding domain
AU28_RS04360	PF03063	Prismane/CO dehydrogenase family
AU28_RS04365	PF03956	AU28_RS04365
AU28_RS04370	PF11398	Protein of unknown function (DUF2813)
AU28_RS04375	PF04393	AU28_RS04375
AU28_RS04380	PF16576	AU28_RS04380
AU28_RS04385	PF00005	ABC transporter
AU28_RS04385	PF02687	AU28_RS04385
AU28_RS04385	PF12704	MacB-like periplasmic core domain
AU28_RS04390	PF00313	'Cold-shock' DNA-binding domain
AU28_RS04395	PF02617	ATP-dependent Clp protease adaptor protein ClpS
AU28_RS04400	PF00004	ATPase family associated with various cellular activities (AAA)
AU28_RS04400	PF02861	Clp amino terminal domain
AU28_RS04400	PF07724	AAA domain (Cdc48 subfamily)
AU28_RS04400	PF10431	C-terminal, D2-small domain, of ClpB protein
AU28_RS04425	PF00857	Isochorismatase family
AU28_RS04430	PF02678	Pirin
AU28_RS04430	PF05726	Pirin C-terminal cupin domain
AU28_RS04435	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS04435	PF03466	LysR substrate binding domain
AU28_RS04440	PF01176	Translation initiation factor 1A / IF-1
AU28_RS04450	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
AU28_RS04455	PF00005	ABC transporter
AU28_RS04455	PF00664	ABC transporter transmembrane region
AU28_RS04460	PF00005	ABC transporter
AU28_RS04460	PF00664	ABC transporter transmembrane region
AU28_RS04465	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS04470	PF01037	AsnC family
AU28_RS04470	PF13412	Winged helix-turn-helix DNA-binding
AU28_RS04475	PF01580	FtsK/SpoIIIE family
AU28_RS04475	PF09397	Ftsk gamma domain
AU28_RS04475	PF13491	AU28_RS04475
AU28_RS04480	PF03548	Outer membrane lipoprotein carrier protein LolA
AU28_RS04485	PF00004	ATPase family associated with various cellular activities (AAA)
AU28_RS04485	PF12002	MgsA AAA+ ATPase C terminal
AU28_RS04485	PF16193	AU28_RS04485
AU28_RS04490	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AU28_RS04490	PF02403	Seryl-tRNA synthetase N-terminal domain
AU28_RS04495	PF00384	Molybdopterin oxidoreductase
AU28_RS04495	PF01568	Molydopterin dinucleotide binding domain
AU28_RS04495	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AU28_RS04500	PF12800	4Fe-4S binding domain
AU28_RS04500	PF13247	4Fe-4S dicluster domain
AU28_RS04505	PF04976	AU28_RS04505
AU28_RS04515	PF07690	Major Facilitator Superfamily
AU28_RS04520	PF13520	Amino acid permease
AU28_RS04525	PF04055	Radical SAM superfamily
AU28_RS04525	PF13353	4Fe-4S single cluster domain
AU28_RS04535	PF11047	AU28_RS04535
AU28_RS04540	PF01228	Glycine radical
AU28_RS04540	PF02901	Pyruvate formate lyase
AU28_RS04545	PF01226	Formate/nitrite transporter
AU28_RS04550	PF02624	YcaO-like family
AU28_RS04555	PF04239	Protein of unknown function (DUF421)
AU28_RS04560	PF00266	Aminotransferase class-V
AU28_RS04565	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AU28_RS04570	PF01435	Peptidase family M48
AU28_RS04575	PF02224	Cytidylate kinase
AU28_RS04580	PF00575	S1 RNA binding domain
AU28_RS04585	PF00216	Bacterial DNA-binding protein
AU28_RS04590	PF00753	Metallo-beta-lactamase superfamily
AU28_RS04590	PF03772	AU28_RS04590
AU28_RS04590	PF13567	AU28_RS04590
AU28_RS04595	PF00005	ABC transporter
AU28_RS04595	PF00664	ABC transporter transmembrane region
AU28_RS04600	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
AU28_RS04605	PF06224	AU28_RS04605
AU28_RS04610	PF03966	Trm112p-like protein
AU28_RS04615	PF02348	Cytidylyltransferase
AU28_RS04620	PF01636	Phosphotransferase enzyme family
AU28_RS04625	PF02698	DUF218 domain
AU28_RS04630	PF13489	Methyltransferase domain
AU28_RS04635	PF03882	KicB killing factor
AU28_RS04635	PF17192	AU28_RS04635
AU28_RS04635	PF17193	AU28_RS04635
AU28_RS04640	PF04288	MukE-like family
AU28_RS04645	PF04310	MukB N-terminal
AU28_RS04645	PF13558	Putative exonuclease SbcCD, C subunit
AU28_RS04645	PF16330	AU28_RS04645
AU28_RS04650	PF01471	Putative peptidoglycan binding domain
AU28_RS04650	PF03734	L,D-transpeptidase catalytic domain
AU28_RS04655	PF05951	AU28_RS04655
AU28_RS04660	PF00753	Metallo-beta-lactamase superfamily
AU28_RS04665	PF00155	Aminotransferase class I and II
AU28_RS04670	PF00267	Gram-negative porin
AU28_RS04675	PF00152	tRNA synthetases class II (D, K and N)
AU28_RS04675	PF01336	OB-fold nucleic acid binding domain
AU28_RS04680	PF01037	AsnC family
AU28_RS04680	PF13412	Winged helix-turn-helix DNA-binding
AU28_RS04685	PF00291	Pyridoxal-phosphate dependent enzyme
AU28_RS04690	PF01235	AU28_RS04690
AU28_RS04695	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
AU28_RS04700	PF03837	AU28_RS04700
AU28_RS04715	PF07484	Phage Tail Collar Domain
AU28_RS04720	PF02413	AU28_RS04720
AU28_RS04730	PF15645	Dermonecrotoxin of the Papain-like fold
AU28_RS04735	PF03050	AU28_RS04735
AU28_RS04735	PF13817	AU28_RS04735
AU28_RS04740	PF02586	Uncharacterised ACR, COG2135
AU28_RS04755	PF06183	DinI-like family
AU28_RS04760	PF01433	Peptidase family M1
AU28_RS04760	PF11940	Domain of unknown function (DUF3458)
AU28_RS04765	PF01180	Dihydroorotate dehydrogenase
AU28_RS04770	PF07126	AU28_RS04770
AU28_RS04775	PF00111	2Fe-2S iron-sulfur cluster binding domain
AU28_RS04775	PF03473	MOSC domain
AU28_RS04775	PF03476	MOSC N-terminal beta barrel domain
AU28_RS04780	PF01170	Putative RNA methylase family UPF0020
AU28_RS04780	PF02926	THUMP domain
AU28_RS04780	PF10672	S-adenosylmethionine-dependent methyltransferase
AU28_RS04785	PF00005	ABC transporter
AU28_RS04785	PF12848	ABC transporter
AU28_RS04785	PF16326	AU28_RS04785
AU28_RS04790	PF04403	AU28_RS04790
AU28_RS04795	PF02470	AU28_RS04795
AU28_RS04800	PF03886	Protein of unknown function (DUF330)
AU28_RS04805	PF04957	Ribosome modulation factor
AU28_RS04810	PF07977	FabA-like domain
AU28_RS04815	PF05362	Lon protease (S16) C-terminal proteolytic domain
AU28_RS04815	PF13654	AAA domain
AU28_RS04820	PF06303	Organiser of macrodomain of Terminus of chromosome
AU28_RS04825	PF00691	OmpA family
AU28_RS04825	PF01389	OmpA-like transmembrane domain
AU28_RS04830	PF03846	Cell division inhibitor SulA
AU28_RS04835	PF04993	TfoX N-terminal domain
AU28_RS04835	PF04994	TfoX C-terminal domain
AU28_RS04840	PF12805	AU28_RS04840
AU28_RS04840	PF13515	AU28_RS04840
AU28_RS04845	PF03733	AU28_RS04845
AU28_RS04850	PF00580	UvrD/REP helicase N-terminal domain
AU28_RS04850	PF12462	AU28_RS04850
AU28_RS04850	PF13361	UvrD-like helicase C-terminal domain
AU28_RS04855	PF02142	MGS-like domain
AU28_RS04860	PF09829	AU28_RS04860
AU28_RS04865	PF13380	CoA binding domain
AU28_RS04870	PF08755	Hemimethylated DNA-binding protein YccV like
AU28_RS04875	PF10672	S-adenosylmethionine-dependent methyltransferase
AU28_RS04880	PF01161	Phosphatidylethanolamine-binding protein
AU28_RS04885	PF12833	Helix-turn-helix domain
AU28_RS04890	PF00708	Acylphosphatase
AU28_RS04895	PF04358	DsrC like protein
AU28_RS04900	PF01027	Inhibitor of apoptosis-promoting Bax1
AU28_RS04910	PF07108	AU28_RS04910
AU28_RS04915	PF00805	Pentapeptide repeats (8 copies)
AU28_RS04930	PF07824	Type III secretion chaperone domain
AU28_RS04935	PF05925	Enterobacterial virulence protein IpgD
AU28_RS04940	PF13132	AU28_RS04940
AU28_RS04950	PF03577	AU28_RS04950
AU28_RS04955	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS04955	PF00672	HAMP domain
AU28_RS04955	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS04960	PF00072	Response regulator receiver domain
AU28_RS04960	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS04965	PF00576	HIUase/Transthyretin family
AU28_RS04970	PF01613	Flavin reductase like domain
AU28_RS04975	PF03241	4-hydroxyphenylacetate 3-hydroxylase C terminal
AU28_RS04975	PF11794	4-hydroxyphenylacetate 3-hydroxylase N terminal
AU28_RS04980	PF01047	MarR family
AU28_RS04985	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AU28_RS04990	PF00171	Aldehyde dehydrogenase family
AU28_RS04995	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
AU28_RS05000	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
AU28_RS05005	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AU28_RS05010	PF03328	HpcH/HpaI aldolase/citrate lyase family
AU28_RS05015	PF07690	Major Facilitator Superfamily
AU28_RS05020	PF07883	Cupin domain
AU28_RS05020	PF12833	Helix-turn-helix domain
AU28_RS05025	PF12706	Beta-lactamase superfamily domain
AU28_RS05035	PF13591	MerR HTH family regulatory protein
AU28_RS05040	PF00226	DnaJ domain
AU28_RS05040	PF01556	DnaJ C terminal domain
AU28_RS05050	PF02683	AU28_RS05050
AU28_RS05050	PF11412	Disulphide bond corrector protein DsbC
AU28_RS05050	PF13899	Thioredoxin-like
AU28_RS05055	PF01323	DSBA-like thioredoxin domain
AU28_RS05060	PF08534	Redoxin
AU28_RS05070	PF13993	AU28_RS05070
AU28_RS05075	PF03358	NADPH-dependent FMN reductase
AU28_RS05080	PF10685	AU28_RS05080
AU28_RS05085	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS05085	PF08362	YcdC-like protein, C-terminal region
AU28_RS05090	PF07007	Protein of unknown function (DUF1311)
AU28_RS05095	PF00171	Aldehyde dehydrogenase family
AU28_RS05095	PF01619	Proline dehydrogenase
AU28_RS05095	PF14850	DNA-binding domain of Proline dehydrogenase
AU28_RS05100	PF00474	Sodium:solute symporter family
AU28_RS05110	PF02562	PhoH-like protein
AU28_RS05115	PF01380	SIS domain
AU28_RS05115	PF01418	Helix-turn-helix domain, rpiR family
AU28_RS05120	PF00474	Sodium:solute symporter family
AU28_RS05125	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
AU28_RS05130	PF01344	Kelch motif
AU28_RS05135	PF06178	Oligogalacturonate-specific porin protein (KdgM)
AU28_RS05140	PF07690	Major Facilitator Superfamily
AU28_RS05145	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AU28_RS05145	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
AU28_RS05150	PF03795	YCII-related domain
AU28_RS05165	PF07007	Protein of unknown function (DUF1311)
AU28_RS05180	PF01476	LysM domain
AU28_RS05185	PF05638	Protein of unknown function (DUF796)
AU28_RS05190	PF06812	AU28_RS05190
AU28_RS05190	PF12486	AU28_RS05190
AU28_RS05195	PF06744	AU28_RS05195
AU28_RS05195	PF06761	AU28_RS05195
AU28_RS05195	PF14331	AU28_RS05195
AU28_RS05200	PF14891	Effector protein
AU28_RS05215	PF08238	Sel1 repeat
AU28_RS05220	PF08238	Sel1 repeat
AU28_RS05225	PF01527	Transposase
AU28_RS05250	PF00313	'Cold-shock' DNA-binding domain
AU28_RS05255	PF00267	Gram-negative porin
AU28_RS05265	PF01966	HD domain
AU28_RS05270	PF00145	C-5 cytosine-specific DNA methylase
AU28_RS05275	PF03852	DNA mismatch endonuclease Vsr
AU28_RS05280	PF00892	EamA-like transporter family
AU28_RS05285	PF05661	AU28_RS05285
AU28_RS05290	PF09926	AU28_RS05290
AU28_RS05295	PF00990	GGDEF domain
AU28_RS05295	PF17151	AU28_RS05295
AU28_RS05300	PF08282	haloacid dehalogenase-like hydrolase
AU28_RS05305	PF10733	AU28_RS05305
AU28_RS05310	PF10781	AU28_RS05310
AU28_RS05315	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS05320	PF01311	AU28_RS05320
AU28_RS05325	PF01313	AU28_RS05325
AU28_RS05330	PF00813	AU28_RS05330
AU28_RS05335	PF04347	AU28_RS05335
AU28_RS05340	PF01052	Surface presentation of antigens (SPOA)
AU28_RS05340	PF16973	AU28_RS05340
AU28_RS05345	PF01052	Surface presentation of antigens (SPOA)
AU28_RS05345	PF02154	Flagellar motor switch protein FliM
AU28_RS05350	PF03748	AU28_RS05350
AU28_RS05355	PF02120	Flagellar hook-length control protein FliK
AU28_RS05360	PF02050	Flagellar FliJ protein
AU28_RS05365	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AU28_RS05370	PF02108	AU28_RS05370
AU28_RS05375	PF01706	FliG C-terminal domain
AU28_RS05375	PF14841	FliG middle domain
AU28_RS05375	PF14842	FliG N-terminal domain
AU28_RS05380	PF01514	Secretory protein of YscJ/FliF family
AU28_RS05380	PF08345	AU28_RS05380
AU28_RS05385	PF02049	AU28_RS05385
AU28_RS05395	PF01206	Sulfurtransferase TusA
AU28_RS05400	PF04143	AU28_RS05400
AU28_RS05405	PF13987	YedD-like protein
AU28_RS05410	PF00128	Alpha amylase, catalytic domain
AU28_RS05410	PF02806	Alpha amylase, C-terminal all-beta domain
AU28_RS05415	PF05400	Flagellar protein FliT
AU28_RS05420	PF02561	Flagellar protein FliS
AU28_RS05425	PF02465	AU28_RS05425
AU28_RS05425	PF07195	AU28_RS05425
AU28_RS05425	PF07196	Flagellin hook IN motif
AU28_RS05435	PF00669	Bacterial flagellin N-terminal helical region
AU28_RS05435	PF00700	Bacterial flagellin C-terminal helical region
AU28_RS05445	PF04539	Sigma-70 region 3
AU28_RS05445	PF04542	Sigma-70 region 2
AU28_RS05445	PF04545	Sigma-70, region 4
AU28_RS05450	PF02899	Phage integrase, N-terminal SAM-like domain
AU28_RS05455	PF00497	Bacterial extracellular solute-binding proteins, family 3
AU28_RS05460	PF00291	Pyridoxal-phosphate dependent enzyme
AU28_RS05465	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS05470	PF00005	ABC transporter
AU28_RS05475	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS05475	PF03472	Autoinducer binding domain
AU28_RS05480	PF10769	AU28_RS05480
AU28_RS05490	PF00072	Response regulator receiver domain
AU28_RS05490	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS05495	PF01541	GIY-YIG catalytic domain
AU28_RS05495	PF02151	UvrB/uvrC motif
AU28_RS05495	PF08459	UvrC Helix-hairpin-helix N-terminal
AU28_RS05495	PF14520	Helix-hairpin-helix domain
AU28_RS05500	PF01066	CDP-alcohol phosphatidyltransferase
AU28_RS05525	PF00877	NlpC/P60 family
AU28_RS05525	PF12912	NLPC_P60 stabilising domain, N term
AU28_RS05525	PF12913	SH3 domain of the SH3b1 type
AU28_RS05525	PF12914	SH3 domain of SH3b2 type
AU28_RS05535	PF02810	SEC-C motif
AU28_RS05535	PF03695	Uncharacterised protein family (UPF0149)
AU28_RS05540	PF03222	Tryptophan/tyrosine permease family
AU28_RS05545	PF10678	AU28_RS05545
AU28_RS05550	PF00210	Ferritin-like domain
AU28_RS05555	PF13992	AU28_RS05555
AU28_RS05560	PF02502	Ribose/Galactose Isomerase
AU28_RS05560	PF12408	Ribose-5-phosphate isomerase
AU28_RS05565	PF00210	Ferritin-like domain
AU28_RS05570	PF01965	DJ-1/PfpI family
AU28_RS05580	PF02358	Trehalose-phosphatase
AU28_RS05585	PF00982	Glycosyltransferase family 20
AU28_RS05590	PF00582	Universal stress protein family
AU28_RS05600	PF05247	Flagellar transcriptional activator (FlhD)
AU28_RS05605	PF05280	Flagellar transcriptional activator (FlhC)
AU28_RS05610	PF01618	AU28_RS05610
AU28_RS05615	PF00691	OmpA family
AU28_RS05615	PF13677	AU28_RS05615
AU28_RS05620	PF01584	CheW-like domain
AU28_RS05620	PF01627	Hpt domain
AU28_RS05620	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS05620	PF02895	Signal transducing histidine kinase, homodimeric domain
AU28_RS05620	PF09078	CheY binding
AU28_RS05625	PF01584	CheW-like domain
AU28_RS05630	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AU28_RS05630	PF00672	HAMP domain
AU28_RS05630	PF02203	Tar ligand binding domain homologue
AU28_RS05635	PF01739	CheR methyltransferase, SAM binding domain
AU28_RS05635	PF03705	CheR methyltransferase, all-alpha domain
AU28_RS05640	PF00072	Response regulator receiver domain
AU28_RS05640	PF01339	CheB methylesterase
AU28_RS05645	PF00072	Response regulator receiver domain
AU28_RS05650	PF04344	Chemotaxis phosphatase, CheZ
AU28_RS05655	PF01312	FlhB HrpN YscU SpaS Family
AU28_RS05660	PF00771	FHIPEP family
AU28_RS05665	PF06366	AU28_RS05665
AU28_RS05670	PF07470	Glycosyl Hydrolase Family 88
AU28_RS05675	PF00905	Penicillin binding protein transpeptidase domain
AU28_RS05675	PF03717	Penicillin-binding Protein dimerisation domain
AU28_RS05680	PF00750	tRNA synthetases class I (R)
AU28_RS05680	PF03485	Arginyl tRNA synthetase N terminal domain
AU28_RS05680	PF05746	DALR anticodon binding domain
AU28_RS05685	PF06185	YecM protein
AU28_RS05690	PF03932	CutC family
AU28_RS05695	PF08003	Protein of unknown function (DUF1698)
AU28_RS05700	PF13649	Methyltransferase domain
AU28_RS05705	PF01124	MAPEG family
AU28_RS05710	PF01904	Protein of unknown function DUF72
AU28_RS05715	PF00857	Isochorismatase family
AU28_RS05720	PF00152	tRNA synthetases class II (D, K and N)
AU28_RS05720	PF01336	OB-fold nucleic acid binding domain
AU28_RS05720	PF02938	GAD domain
AU28_RS05725	PF00293	NUDIX domain
AU28_RS05730	PF01709	Transcriptional regulator
AU28_RS05735	PF02075	Crossover junction endodeoxyribonuclease RuvC
AU28_RS05740	PF05708	Orthopoxvirus protein of unknown function (DUF830)
AU28_RS05750	PF01330	RuvA N terminal domain
AU28_RS05750	PF07499	RuvA, C-terminal domain
AU28_RS05750	PF14520	Helix-hairpin-helix domain
AU28_RS05755	PF05491	Holliday junction DNA helicase ruvB C-terminus
AU28_RS05755	PF05496	Holliday junction DNA helicase ruvB N-terminus
AU28_RS05760	PF00950	AU28_RS05760
AU28_RS05765	PF00005	ABC transporter
AU28_RS05770	PF01297	Periplasmic solute binding protein family
AU28_RS05775	PF01551	Peptidase family M23
AU28_RS05775	PF04225	Opacity-associated protein A LysM-like domain
AU28_RS05775	PF08525	AU28_RS05775
AU28_RS05780	PF03279	AU28_RS05780
AU28_RS05785	PF00224	Pyruvate kinase, barrel domain
AU28_RS05785	PF02887	Pyruvate kinase, alpha/beta domain
AU28_RS05790	PF01380	SIS domain
AU28_RS05790	PF01418	Helix-turn-helix domain, rpiR family
AU28_RS05795	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
AU28_RS05795	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
AU28_RS05800	PF00920	Dehydratase family
AU28_RS05805	PF01081	KDPG and KHG aldolase
AU28_RS05810	PF02222	ATP-grasp domain
AU28_RS05815	PF07130	YebG protein
AU28_RS05820	PF13995	YebF-like protein
AU28_RS05825	PF04391	AU28_RS05825
AU28_RS05830	PF00326	Prolyl oligopeptidase family
AU28_RS05830	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AU28_RS05835	PF00929	Exonuclease
AU28_RS05840	PF00795	Carbon-nitrogen hydrolase
AU28_RS05845	PF06440	DNA polymerase III, theta subunit
AU28_RS05850	PF04234	CopC domain
AU28_RS05855	PF05425	AU28_RS05855
AU28_RS05860	PF10709	AU28_RS05860
AU28_RS05870	PF00589	Phage integrase family
AU28_RS05870	PF09003	Bacteriophage lambda integrase, N-terminal domain
AU28_RS05875	PF07825	Excisionase-like protein
AU28_RS05880	PF00753	Metallo-beta-lactamase superfamily
AU28_RS05880	PF14863	Alkyl sulfatase dimerisation
AU28_RS05880	PF14864	Alkyl sulfatase C-terminal
AU28_RS05895	PF07105	AU28_RS05895
AU28_RS05900	PF05766	AU28_RS05900
AU28_RS05905	PF06323	AU28_RS05905
AU28_RS05925	PF07108	AU28_RS05925
AU28_RS05930	PF05106	AU28_RS05930
AU28_RS05935	PF00959	Phage lysozyme
AU28_RS05940	PF03245	AU28_RS05940
AU28_RS05945	PF07278	AU28_RS05945
AU28_RS05950	PF13505	Outer membrane protein beta-barrel domain
AU28_RS05955	PF00080	Copper/zinc superoxide dismutase (SODC)
AU28_RS05960	PF05100	AU28_RS05960
AU28_RS05965	PF14464	Prokaryotic homologs of the JAB domain
AU28_RS05975	PF02413	AU28_RS05975
AU28_RS05980	PF05364	AU28_RS05980
AU28_RS05980	PF07487	SopE GEF domain
AU28_RS05995	PF00589	Phage integrase family
AU28_RS06015	PF10721	AU28_RS06015
AU28_RS06030	PF07278	AU28_RS06030
AU28_RS06040	PF05876	AU28_RS06040
AU28_RS06050	PF01661	Macro domain
AU28_RS06055	PF02413	AU28_RS06055
AU28_RS06060	PF15284	AU28_RS06060
AU28_RS06070	PF02600	Disulfide bond formation protein DsbB
AU28_RS06080	PF00892	EamA-like transporter family
AU28_RS06095	PF00872	AU28_RS06095
AU28_RS06110	PF00583	Acetyltransferase (GNAT) family
AU28_RS06120	PF07166	Protein of unknown function (DUF1398)
AU28_RS06125	PF05364	AU28_RS06125
AU28_RS06125	PF07487	SopE GEF domain
AU28_RS06135	PF00149	Calcineurin-like phosphoesterase
AU28_RS06140	PF07358	AU28_RS06140
AU28_RS06145	PF07351	AU28_RS06145
AU28_RS06150	PF01189	NOL1/NOP2/sun family
AU28_RS06150	PF13636	pre-rRNA processing and ribosome biogenesis
AU28_RS06150	PF17125	AU28_RS06150
AU28_RS06155	PF02470	AU28_RS06155
AU28_RS06160	PF04403	AU28_RS06160
AU28_RS06165	PF13185	GAF domain
AU28_RS06170	PF04352	ProQ/FINO family
AU28_RS06175	PF00595	PDZ domain (Also known as DHR or GLGF)
AU28_RS06175	PF03572	Peptidase family S41
AU28_RS06175	PF11818	AU28_RS06175
AU28_RS06180	PF01435	Peptidase family M48
AU28_RS06185	PF07690	Major Facilitator Superfamily
AU28_RS06190	PF01614	Bacterial transcriptional regulator
AU28_RS06190	PF09339	IclR helix-turn-helix domain
AU28_RS06195	PF13996	AU28_RS06195
AU28_RS06200	PF13998	AU28_RS06200
AU28_RS06205	PF13974	AU28_RS06205
AU28_RS06210	PF10736	AU28_RS06210
AU28_RS06215	PF00313	'Cold-shock' DNA-binding domain
AU28_RS06220	PF00905	Penicillin binding protein transpeptidase domain
AU28_RS06220	PF03717	Penicillin-binding Protein dimerisation domain
AU28_RS06225	PF13847	Methyltransferase domain
AU28_RS06230	PF02659	AU28_RS06230
AU28_RS06235	PF06173	AU28_RS06235
AU28_RS06240	PF03613	AU28_RS06240
AU28_RS06245	PF03609	AU28_RS06245
AU28_RS06250	PF03610	PTS system fructose IIA component
AU28_RS06250	PF03830	PTS system sorbose subfamily IIB component
AU28_RS06260	PF03471	Transporter associated domain
AU28_RS06260	PF03741	AU28_RS06260
AU28_RS06265	PF00563	EAL domain
AU28_RS06265	PF12792	AU28_RS06265
AU28_RS06270	PF03313	AU28_RS06270
AU28_RS06270	PF03315	Serine dehydratase beta chain
AU28_RS06275	PF00293	NUDIX domain
AU28_RS06280	PF00425	chorismate binding enzyme
AU28_RS06280	PF04715	Anthranilate synthase component I, N terminal region
AU28_RS06285	PF03701	AU28_RS06285
AU28_RS06290	PF01042	Endoribonuclease L-PSP
AU28_RS06295	PF04851	Type III restriction enzyme, res subunit
AU28_RS06295	PF13307	Helicase C-terminal domain
AU28_RS06300	PF00814	Glycoprotease family
AU28_RS06305	PF03843	AU28_RS06305
AU28_RS06310	PF00501	AMP-binding enzyme
AU28_RS06310	PF13193	AMP-binding enzyme C-terminal domain
AU28_RS06315	PF00570	HRDC domain
AU28_RS06315	PF01612	3'-5' exonuclease
AU28_RS06320	PF03776	Septum formation topological specificity factor MinE
AU28_RS06325	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AU28_RS06330	PF03775	Septum formation inhibitor MinC, C-terminal domain
AU28_RS06330	PF05209	Septum formation inhibitor MinC, N-terminal domain
AU28_RS06335	PF05166	YcgL domain
AU28_RS06340	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AU28_RS06345	PF03692	AU28_RS06345
AU28_RS06355	PF08178	AU28_RS06355
AU28_RS06360	PF09313	Domain of unknown function (DUF1971)
AU28_RS06365	PF02600	Disulfide bond formation protein DsbB
AU28_RS06370	PF06450	AU28_RS06370
AU28_RS06375	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS06375	PF07840	FadR C-terminal domain
AU28_RS06380	PF04293	AU28_RS06380
AU28_RS06385	PF01266	FAD dependent oxidoreductase
AU28_RS06390	PF00842	Alanine racemase, C-terminal domain
AU28_RS06390	PF01168	Alanine racemase, N-terminal domain
AU28_RS06395	PF00999	Sodium/hydrogen exchanger family
AU28_RS06395	PF02080	TrkA-C domain
AU28_RS06395	PF03471	Transporter associated domain
AU28_RS06400	PF02016	LD-carboxypeptidase
AU28_RS06405	PF01464	Transglycosylase SLT domain
AU28_RS06410	PF07238	PilZ domain
AU28_RS06410	PF07317	Flagellar regulator YcgR
AU28_RS06415	PF04226	AU28_RS06415
AU28_RS06420	PF01204	Trehalase
AU28_RS06425	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AU28_RS06425	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
AU28_RS06430	PF08173	AU28_RS06430
AU28_RS06435	PF02322	AU28_RS06435
AU28_RS06440	PF01654	AU28_RS06440
AU28_RS06445	PF04809	HupH hydrogenase expression protein, C-terminal conserved region
AU28_RS06450	PF07449	Hydrogenase-1 expression protein HyaE
AU28_RS06455	PF01750	Hydrogenase maturation protease
AU28_RS06460	PF01292	Prokaryotic cytochrome b561
AU28_RS06465	PF00374	Nickel-dependent hydrogenase
AU28_RS06470	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
AU28_RS06470	PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal
AU28_RS06485	PF01926	50S ribosome-binding GTPase
AU28_RS06485	PF06071	Protein of unknown function (DUF933)
AU28_RS06490	PF01195	Peptidyl-tRNA hydrolase
AU28_RS06495	PF10762	AU28_RS06495
AU28_RS06500	PF00916	AU28_RS06500
AU28_RS06500	PF01740	STAS domain
AU28_RS06505	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
AU28_RS06505	PF14572	Phosphoribosyl synthetase-associated domain
AU28_RS06510	PF00288	GHMP kinases N terminal domain
AU28_RS06510	PF08544	GHMP kinases C terminal
AU28_RS06515	PF03550	Outer membrane lipoprotein LolB
AU28_RS06520	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
AU28_RS06520	PF01488	Shikimate / quinate 5-dehydrogenase
AU28_RS06520	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
AU28_RS06525	PF00472	RF-1 domain
AU28_RS06525	PF03462	PCRF domain
AU28_RS06530	PF13847	Methyltransferase domain
AU28_RS06535	PF04247	AU28_RS06535
AU28_RS06540	PF13369	AU28_RS06540
AU28_RS06540	PF13371	Tetratricopeptide repeat
AU28_RS06545	PF00793	DAHP synthetase I family
AU28_RS06550	PF01699	Sodium/calcium exchanger protein
AU28_RS06555	PF06150	ChaB
AU28_RS06560	PF02635	DsrE/DsrF-like family
AU28_RS06565	PF11924	Protein of unknown function (DUF3442)
AU28_RS06570	PF00072	Response regulator receiver domain
AU28_RS06570	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS06575	PF00672	HAMP domain
AU28_RS06575	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS06575	PF07730	Histidine kinase
AU28_RS06575	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
AU28_RS06580	PF07690	Major Facilitator Superfamily
AU28_RS06585	PF00384	Molybdopterin oxidoreductase
AU28_RS06585	PF01568	Molydopterin dinucleotide binding domain
AU28_RS06585	PF14710	Respiratory nitrate reductase alpha N-terminal
AU28_RS06590	PF13247	4Fe-4S dicluster domain
AU28_RS06590	PF14711	Respiratory nitrate reductase beta C-terminal
AU28_RS06595	PF02613	Nitrate reductase delta subunit
AU28_RS06600	PF02665	Nitrate reductase gamma subunit
AU28_RS06605	PF08238	Sel1 repeat
AU28_RS06630	PF02810	SEC-C motif
AU28_RS06635	PF01734	Patatin-like phospholipase
AU28_RS06640	PF00072	Response regulator receiver domain
AU28_RS06645	PF00483	Nucleotidyl transferase
AU28_RS06650	PF00816	H-NS histone family
AU28_RS06655	PF00265	Thymidine kinase
AU28_RS06660	PF00171	Aldehyde dehydrogenase family
AU28_RS06660	PF00465	Iron-containing alcohol dehydrogenase
AU28_RS06665	PF01914	AU28_RS06665
AU28_RS06670	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AU28_RS06675	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS06680	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS06680	PF12911	AU28_RS06680
AU28_RS06685	PF00005	ABC transporter
AU28_RS06685	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AU28_RS06690	PF00005	ABC transporter
AU28_RS06690	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AU28_RS06695	PF00520	Ion transport protein
AU28_RS06700	PF04269	Protein of unknown function, DUF440
AU28_RS06705	PF13091	PLD-like domain
AU28_RS06705	PF13396	AU28_RS06705
AU28_RS06710	PF03795	YCII-related domain
AU28_RS06715	PF03544	Gram-negative bacterial TonB protein C-terminal
AU28_RS06715	PF16031	AU28_RS06715
AU28_RS06720	PF03061	Thioesterase superfamily
AU28_RS06725	PF04279	AU28_RS06725
AU28_RS06730	PF06790	AU28_RS06730
AU28_RS06735	PF03692	AU28_RS06735
AU28_RS06740	PF03922	OmpW family
AU28_RS06745	PF05067	Manganese containing catalase
AU28_RS06750	PF05974	Domain of unknown function (DUF892)
AU28_RS06755	PF05974	Domain of unknown function (DUF892)
AU28_RS06760	PF10685	AU28_RS06760
AU28_RS06765	PF00290	Tryptophan synthase alpha chain
AU28_RS06770	PF00291	Pyridoxal-phosphate dependent enzyme
AU28_RS06775	PF00218	Indole-3-glycerol phosphate synthase
AU28_RS06775	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
AU28_RS06780	PF00117	Glutamine amidotransferase class-I
AU28_RS06780	PF00591	Glycosyl transferase family, a/b domain
AU28_RS06780	PF02885	Glycosyl transferase family, helical bundle domain
AU28_RS06785	PF00425	chorismate binding enzyme
AU28_RS06785	PF04715	Anthranilate synthase component I, N terminal region
AU28_RS06790	PF02811	PHP domain
AU28_RS06795	PF01300	Telomere recombination
AU28_RS06800	PF00849	RNA pseudouridylate synthase
AU28_RS06800	PF01479	S4 domain
AU28_RS06805	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
AU28_RS06805	PF12557	Cob(I)alamin adenosyltransferase N terminal
AU28_RS06810	PF00106	short chain dehydrogenase
AU28_RS06815	PF01343	Peptidase family S49
AU28_RS06815	PF08496	AU28_RS06815
AU28_RS06820	PF10692	Protein of unknown function (DUF2498)
AU28_RS06825	PF01131	DNA topoisomerase
AU28_RS06825	PF01396	AU28_RS06825
AU28_RS06825	PF01751	Toprim domain
AU28_RS06825	PF08272	Topoisomerase I zinc-ribbon-like
AU28_RS06830	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS06830	PF03466	LysR substrate binding domain
AU28_RS06840	PF00330	Aconitase family (aconitate hydratase)
AU28_RS06840	PF00694	Aconitase C-terminal domain
AU28_RS06845	PF00925	GTP cyclohydrolase II
AU28_RS06850	PF01569	PAP2 superfamily
AU28_RS06855	PF06305	AU28_RS06855
AU28_RS06860	PF13432	Tetratricopeptide repeat
AU28_RS06860	PF14559	Tetratricopeptide repeat
AU28_RS06865	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AU28_RS06870	PF01253	Translation initiation factor SUI1
AU28_RS06875	PF05433	AU28_RS06875
AU28_RS06880	PF00455	AU28_RS06880
AU28_RS06880	PF08220	DeoR-like helix-turn-helix domain
AU28_RS06890	PF00563	EAL domain
AU28_RS06890	PF00990	GGDEF domain
AU28_RS06890	PF13426	PAS domain
AU28_RS06895	PF00575	S1 RNA binding domain
AU28_RS06895	PF00773	RNB domain
AU28_RS06895	PF08206	Ribonuclease B OB domain
AU28_RS06905	PF13561	Enoyl-(Acyl carrier protein) reductase
AU28_RS06930	PF00005	ABC transporter
AU28_RS06935	PF00005	ABC transporter
AU28_RS06935	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AU28_RS06940	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS06940	PF12911	AU28_RS06940
AU28_RS06945	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS06950	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AU28_RS06955	PF00158	Sigma-54 interaction domain
AU28_RS06960	PF04012	AU28_RS06960
AU28_RS06965	PF06667	AU28_RS06965
AU28_RS06970	PF04024	AU28_RS06970
AU28_RS06975	PF09584	AU28_RS06975
AU28_RS06980	PF00581	Rhodanese-like domain
AU28_RS06985	PF04317	AU28_RS06985
AU28_RS06990	PF05128	AU28_RS06990
AU28_RS06995	PF00158	Sigma-54 interaction domain
AU28_RS07000	PF08534	Redoxin
AU28_RS07005	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AU28_RS07005	PF13378	Enolase C-terminal domain-like
AU28_RS07010	PF00246	Zinc carboxypeptidase
AU28_RS07015	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AU28_RS07020	PF05368	NmrA-like family
AU28_RS07025	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS07025	PF03466	LysR substrate binding domain
AU28_RS07030	PF00248	Aldo/keto reductase family
AU28_RS07035	PF13561	Enoyl-(Acyl carrier protein) reductase
AU28_RS07040	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS07045	PF06004	Bacterial protein of unknown function (DUF903)
AU28_RS07055	PF06445	GyrI-like small molecule binding domain
AU28_RS07055	PF12833	Helix-turn-helix domain
AU28_RS07065	PF11924	Protein of unknown function (DUF3442)
AU28_RS07070	PF16583	AU28_RS07070
AU28_RS07080	PF08534	Redoxin
AU28_RS07090	PF03483	B3/4 domain
AU28_RS07095	PF01381	Helix-turn-helix
AU28_RS07095	PF07883	Cupin domain
AU28_RS07100	PF00924	Mechanosensitive ion channel
AU28_RS07105	PF10749	AU28_RS07105
AU28_RS07110	PF00582	Universal stress protein family
AU28_RS07115	PF00027	Cyclic nucleotide-binding domain
AU28_RS07115	PF13545	Crp-like helix-turn-helix domain
AU28_RS07120	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AU28_RS07120	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
AU28_RS07125	PF01713	Smr domain
AU28_RS07130	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AU28_RS07135	PF01544	CorA-like Mg2+ transporter protein
AU28_RS07140	PF00270	DEAD/DEAH box helicase
AU28_RS07140	PF00271	Helicase conserved C-terminal domain
AU28_RS07140	PF03880	DbpA RNA binding domain
AU28_RS07145	PF01171	PP-loop family
AU28_RS07150	PF00589	Phage integrase family
AU28_RS07155	PF06630	AU28_RS07155
AU28_RS07170	PF14163	AU28_RS07170
AU28_RS07175	PF07151	AU28_RS07175
AU28_RS07180	PF01381	Helix-turn-helix
AU28_RS07185	PF06163	AU28_RS07185
AU28_RS07205	PF01848	AU28_RS07205
AU28_RS07215	PF07105	AU28_RS07215
AU28_RS07220	PF07102	Protein of unknown function (DUF1364)
AU28_RS07225	PF06576	AU28_RS07225
AU28_RS07235	PF05449	AU28_RS07235
AU28_RS07240	PF05838	Glycosyl hydrolase 108
AU28_RS07240	PF09374	Predicted Peptidoglycan domain
AU28_RS07255	PF00893	Small Multidrug Resistance protein
AU28_RS07260	PF00582	Universal stress protein family
AU28_RS07270	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
AU28_RS07270	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
AU28_RS07270	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AU28_RS07270	PF10371	Domain of unknown function
AU28_RS07270	PF13484	AU28_RS07270
AU28_RS07270	PF17147	AU28_RS07270
AU28_RS07280	PF03891	AU28_RS07280
AU28_RS07285	PF03724	META domain
AU28_RS07290	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AU28_RS07290	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AU28_RS07295	PF11739	AU28_RS07295
AU28_RS07300	PF13617	AU28_RS07300
AU28_RS07305	PF07027	AU28_RS07305
AU28_RS07310	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AU28_RS07315	PF02525	Flavodoxin-like fold
AU28_RS07320	PF00271	Helicase conserved C-terminal domain
AU28_RS07320	PF04408	Helicase associated domain (HA2)
AU28_RS07320	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
AU28_RS07320	PF11898	AU28_RS07320
AU28_RS07325	PF02698	DUF218 domain
AU28_RS07330	PF01292	Prokaryotic cytochrome b561
AU28_RS07335	PF13649	Methyltransferase domain
AU28_RS07350	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS07355	PF00005	ABC transporter
AU28_RS07360	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS07365	PF00497	Bacterial extracellular solute-binding proteins, family 3
AU28_RS07370	PF06961	AU28_RS07370
AU28_RS07375	PF00657	GDSL-like Lipase/Acylhydrolase
AU28_RS07375	PF06767	Sif protein
AU28_RS07385	PF02583	Metal-sensitive transcriptional repressor
AU28_RS07390	PF00107	Zinc-binding dehydrogenase
AU28_RS07390	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS07395	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AU28_RS07395	PF00672	HAMP domain
AU28_RS07395	PF02203	Tar ligand binding domain homologue
AU28_RS07400	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS07400	PF03466	LysR substrate binding domain
AU28_RS07405	PF07063	Domain of unknown function (DUF1338)
AU28_RS07410	PF00135	Carboxylesterase family
AU28_RS07415	PF04349	Periplasmic glucan biosynthesis protein, MdoG
AU28_RS07420	PF04264	YceI-like domain
AU28_RS07425	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS07425	PF07729	FCD domain
AU28_RS07430	PF00107	Zinc-binding dehydrogenase
AU28_RS07430	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS07435	PF07690	Major Facilitator Superfamily
AU28_RS07440	PF13561	Enoyl-(Acyl carrier protein) reductase
AU28_RS07445	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AU28_RS07445	PF13378	Enolase C-terminal domain-like
AU28_RS07450	PF00583	Acetyltransferase (GNAT) family
AU28_RS07455	PF00455	AU28_RS07455
AU28_RS07455	PF08220	DeoR-like helix-turn-helix domain
AU28_RS07460	PF00834	Ribulose-phosphate 3 epimerase family
AU28_RS07465	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AU28_RS07470	PF03437	BtpA family
AU28_RS07475	PF03611	AU28_RS07475
AU28_RS07480	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AU28_RS07485	PF05343	M42 glutamyl aminopeptidase
AU28_RS07490	PF13302	Acetyltransferase (GNAT) domain
AU28_RS07500	PF03595	Voltage-dependent anion channel
AU28_RS07505	PF03848	Tellurite resistance protein TehB
AU28_RS07510	PF11769	AU28_RS07510
AU28_RS07515	PF03594	AU28_RS07515
AU28_RS07520	PF01381	Helix-turn-helix
AU28_RS07520	PF07883	Cupin domain
AU28_RS07525	PF01136	AU28_RS07525
AU28_RS07525	PF12392	AU28_RS07525
AU28_RS07530	PF10829	AU28_RS07530
AU28_RS07535	PF06767	Sif protein
AU28_RS07550	PF01427	D-ala-D-ala dipeptidase
AU28_RS07555	PF00155	Aminotransferase class I and II
AU28_RS07555	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS07560	PF00171	Aldehyde dehydrogenase family
AU28_RS07565	PF10753	AU28_RS07565
AU28_RS07570	PF10139	AU28_RS07570
AU28_RS07575	PF07520	AU28_RS07575
AU28_RS07585	PF10735	AU28_RS07585
AU28_RS07590	PF04657	AU28_RS07590
AU28_RS07595	PF13420	Acetyltransferase (GNAT) domain
AU28_RS07600	PF00107	Zinc-binding dehydrogenase
AU28_RS07600	PF16884	AU28_RS07600
AU28_RS07605	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS07605	PF07729	FCD domain
AU28_RS07610	PF00593	TonB dependent receptor
AU28_RS07610	PF07715	TonB-dependent Receptor Plug Domain
AU28_RS07620	PF06004	Bacterial protein of unknown function (DUF903)
AU28_RS07625	PF00324	Amino acid permease
AU28_RS07635	PF00797	N-acetyltransferase
AU28_RS07640	PF02567	Phenazine biosynthesis-like protein
AU28_RS07645	PF02665	Nitrate reductase gamma subunit
AU28_RS07650	PF02613	Nitrate reductase delta subunit
AU28_RS07655	PF13247	4Fe-4S dicluster domain
AU28_RS07655	PF14711	Respiratory nitrate reductase beta C-terminal
AU28_RS07660	PF00384	Molybdopterin oxidoreductase
AU28_RS07660	PF01568	Molydopterin dinucleotide binding domain
AU28_RS07660	PF14710	Respiratory nitrate reductase alpha N-terminal
AU28_RS07665	PF07690	Major Facilitator Superfamily
AU28_RS07670	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS07675	PF07690	Major Facilitator Superfamily
AU28_RS07680	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AU28_RS07685	PF00267	Gram-negative porin
AU28_RS07690	PF00892	EamA-like transporter family
AU28_RS07695	PF00384	Molybdopterin oxidoreductase
AU28_RS07695	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AU28_RS07700	PF00384	Molybdopterin oxidoreductase
AU28_RS07700	PF01568	Molydopterin dinucleotide binding domain
AU28_RS07705	PF09163	Formate dehydrogenase N, transmembrane
AU28_RS07705	PF13247	4Fe-4S dicluster domain
AU28_RS07710	PF01292	Prokaryotic cytochrome b561
AU28_RS07715	PF00107	Zinc-binding dehydrogenase
AU28_RS07715	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS07720	PF00390	Malic enzyme, N-terminal domain
AU28_RS07720	PF03949	Malic enzyme, NAD binding domain
AU28_RS07725	PF08136	AU28_RS07725
AU28_RS07730	PF10684	AU28_RS07730
AU28_RS07735	PF02566	OsmC-like protein
AU28_RS07740	PF06411	HdeA/HdeB family
AU28_RS07745	PF06884	AU28_RS07745
AU28_RS07750	PF00128	Alpha amylase, catalytic domain
AU28_RS07750	PF11941	Domain of unknown function (DUF3459)
AU28_RS07755	PF00128	Alpha amylase, catalytic domain
AU28_RS07760	PF00128	Alpha amylase, catalytic domain
AU28_RS07760	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AU28_RS07765	PF00155	Aminotransferase class I and II
AU28_RS07770	PF03553	AU28_RS07770
AU28_RS07775	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS07775	PF13377	Periplasmic binding protein-like domain
AU28_RS07785	PF07377	Protein of unknown function (DUF1493)
AU28_RS07795	PF01042	Endoribonuclease L-PSP
AU28_RS07800	PF02547	Queuosine biosynthesis protein
AU28_RS07805	PF01047	MarR family
AU28_RS07810	PF01494	FAD binding domain
AU28_RS07815	PF07690	Major Facilitator Superfamily
AU28_RS07820	PF10142	PhoPQ-activated pathogenicity-related protein
AU28_RS07825	PF07690	Major Facilitator Superfamily
AU28_RS07830	PF00107	Zinc-binding dehydrogenase
AU28_RS07830	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS07835	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS07835	PF07729	FCD domain
AU28_RS07840	PF02275	Linear amide C-N hydrolases, choloylglycine hydrolase family
AU28_RS07845	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
AU28_RS07845	PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal
AU28_RS07850	PF00374	Nickel-dependent hydrogenase
AU28_RS07855	PF01292	Prokaryotic cytochrome b561
AU28_RS07860	PF01750	Hydrogenase maturation protease
AU28_RS07865	PF01455	HupF/HypC family
AU28_RS07870	PF07449	Hydrogenase-1 expression protein HyaE
AU28_RS07875	PF00301	Rubredoxin
AU28_RS07875	PF04809	HupH hydrogenase expression protein, C-terminal conserved region
AU28_RS07885	PF01155	Hydrogenase expression/synthesis hypA family
AU28_RS07890	PF00267	Gram-negative porin
AU28_RS07895	PF14534	Domain of unknown function (DUF4440)
AU28_RS07900	PF01062	AU28_RS07900
AU28_RS07905	PF13811	AU28_RS07905
AU28_RS07910	PF04960	Glutaminase
AU28_RS07915	PF00171	Aldehyde dehydrogenase family
AU28_RS07920	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS07920	PF03466	LysR substrate binding domain
AU28_RS07925	PF07690	Major Facilitator Superfamily
AU28_RS07930	PF01914	AU28_RS07930
AU28_RS07935	PF01047	MarR family
AU28_RS07940	PF12833	Helix-turn-helix domain
AU28_RS07945	PF13999	AU28_RS07945
AU28_RS07950	PF00892	EamA-like transporter family
AU28_RS07955	PF07690	Major Facilitator Superfamily
AU28_RS07965	PF04076	Bacterial OB fold (BOF) protein
AU28_RS07970	PF02464	Competence-damaged protein
AU28_RS07975	PF10685	AU28_RS07975
AU28_RS07980	PF01432	Peptidase family M3
AU28_RS07985	PF00106	short chain dehydrogenase
AU28_RS07990	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS07990	PF07729	FCD domain
AU28_RS07995	PF14001	AU28_RS07995
AU28_RS08000	PF01232	Mannitol dehydrogenase Rossmann domain
AU28_RS08000	PF08125	Mannitol dehydrogenase C-terminal domain
AU28_RS08005	PF07690	Major Facilitator Superfamily
AU28_RS08010	PF00107	Zinc-binding dehydrogenase
AU28_RS08010	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS08015	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AU28_RS08015	PF13378	Enolase C-terminal domain-like
AU28_RS08020	PF02694	AU28_RS08020
AU28_RS08025	PF06932	AU28_RS08025
AU28_RS08030	PF13302	Acetyltransferase (GNAT) domain
AU28_RS08035	PF06788	AU28_RS08035
AU28_RS08040	PF06649	AU28_RS08040
AU28_RS08045	PF00384	Molybdopterin oxidoreductase
AU28_RS08045	PF01568	Molydopterin dinucleotide binding domain
AU28_RS08045	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AU28_RS08050	PF00384	Molybdopterin oxidoreductase
AU28_RS08050	PF01568	Molydopterin dinucleotide binding domain
AU28_RS08050	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AU28_RS08055	PF12800	4Fe-4S binding domain
AU28_RS08055	PF13247	4Fe-4S dicluster domain
AU28_RS08060	PF04976	AU28_RS08060
AU28_RS08065	PF02613	Nitrate reductase delta subunit
AU28_RS08070	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS08075	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AU28_RS08080	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS08085	PF00005	ABC transporter
AU28_RS08085	PF00571	CBS domain
AU28_RS08090	PF00654	Voltage gated chloride channel
AU28_RS08095	PF13500	AAA domain
AU28_RS08100	PF00480	ROK family
AU28_RS08105	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS08105	PF03466	LysR substrate binding domain
AU28_RS08110	PF07690	Major Facilitator Superfamily
AU28_RS08115	PF06392	AU28_RS08115
AU28_RS08120	PF00089	Trypsin
AU28_RS08125	PF00893	Small Multidrug Resistance protein
AU28_RS08130	PF00893	Small Multidrug Resistance protein
AU28_RS08135	PF01594	AU28_RS08135
AU28_RS08140	PF02233	NAD(P) transhydrogenase beta subunit
AU28_RS08145	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AU28_RS08145	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AU28_RS08145	PF12769	Domain of unknown function (DUF3814)
AU28_RS08150	PF07338	Protein of unknown function (DUF1471)
AU28_RS08155	PF13520	Amino acid permease
AU28_RS08160	PF06942	AU28_RS08160
AU28_RS08165	PF00072	Response regulator receiver domain
AU28_RS08165	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS08175	PF00267	Gram-negative porin
AU28_RS08180	PF07969	Amidohydrolase family
AU28_RS08185	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS08185	PF00672	HAMP domain
AU28_RS08185	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS08190	PF05472	DNA replication terminus site-binding protein (Ter protein)
AU28_RS08195	PF00206	Lyase
AU28_RS08195	PF10415	Fumarase C C-terminus
AU28_RS08200	PF05681	AU28_RS08200
AU28_RS08200	PF05683	Fumarase C-terminus
AU28_RS08205	PF01238	Phosphomannose isomerase type I
AU28_RS08210	PF06097	AU28_RS08210
AU28_RS08220	PF00962	Adenosine/AMP deaminase
AU28_RS08225	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AU28_RS08225	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
AU28_RS08235	PF05321	Haemolysin expression modulating protein
AU28_RS08240	PF10754	AU28_RS08240
AU28_RS08245	PF02508	AU28_RS08245
AU28_RS08250	PF04060	Putative Fe-S cluster
AU28_RS08250	PF14697	4Fe-4S dicluster domain
AU28_RS08255	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
AU28_RS08255	PF10531	SLBB domain
AU28_RS08255	PF12838	4Fe-4S dicluster domain
AU28_RS08255	PF13375	RnfC Barrel sandwich hybrid domain
AU28_RS08260	PF03116	AU28_RS08260
AU28_RS08265	PF04205	FMN-binding domain
AU28_RS08270	PF02508	AU28_RS08270
AU28_RS08275	PF00633	Helix-hairpin-helix motif
AU28_RS08275	PF00730	HhH-GPD superfamily base excision DNA repair protein
AU28_RS08275	PF10576	Iron-sulfur binding domain of endonuclease III
AU28_RS08280	PF00854	POT family
AU28_RS08285	PF00043	Glutathione S-transferase, C-terminal domain
AU28_RS08285	PF13409	Glutathione S-transferase, N-terminal domain
AU28_RS08290	PF08543	Phosphomethylpyrimidine kinase
AU28_RS08295	PF00579	tRNA synthetases class I (W and Y)
AU28_RS08295	PF01479	S4 domain
AU28_RS08300	PF01243	Pyridoxamine 5'-phosphate oxidase
AU28_RS08300	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
AU28_RS08305	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
AU28_RS08310	PF03702	Uncharacterised protein family (UPF0075)
AU28_RS08315	PF05433	AU28_RS08315
AU28_RS08320	PF01047	MarR family
AU28_RS08325	PF07869	AU28_RS08325
AU28_RS08330	PF16576	AU28_RS08330
AU28_RS08335	PF04632	AU28_RS08335
AU28_RS08340	PF00080	Copper/zinc superoxide dismutase (SODC)
AU28_RS08345	PF00248	Aldo/keto reductase family
AU28_RS08350	PF06945	AU28_RS08350
AU28_RS08355	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS08355	PF16925	AU28_RS08355
AU28_RS08360	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AU28_RS08365	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AU28_RS08370	PF00929	Exonuclease
AU28_RS08375	PF00462	Glutaredoxin
AU28_RS08380	PF00877	NlpC/P60 family
AU28_RS08385	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AU28_RS08385	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AU28_RS08390	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS08390	PF13377	Periplasmic binding protein-like domain
AU28_RS08395	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS08395	PF03466	LysR substrate binding domain
AU28_RS08400	PF07690	Major Facilitator Superfamily
AU28_RS08405	PF02353	Mycolic acid cyclopropane synthetase
AU28_RS08410	PF00677	Lumazine binding domain
AU28_RS08415	PF01554	MatE
AU28_RS08430	PF01312	FlhB HrpN YscU SpaS Family
AU28_RS08435	PF01311	AU28_RS08435
AU28_RS08440	PF01313	AU28_RS08440
AU28_RS08445	PF00813	AU28_RS08445
AU28_RS08450	PF01052	Surface presentation of antigens (SPOA)
AU28_RS08465	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AU28_RS08470	PF00771	FHIPEP family
AU28_RS08480	PF07201	HrpJ-like domain
AU28_RS08490	PF13327	AU28_RS08490
AU28_RS08495	PF01514	Secretory protein of YscJ/FliF family
AU28_RS08505	PF06287	AU28_RS08505
AU28_RS08510	PF09392	Type III secretion needle MxiH like
AU28_RS08530	PF09621	AU28_RS08530
AU28_RS08540	PF04888	AU28_RS08540
AU28_RS08550	PF03433	EspA-like secreted protein
AU28_RS08560	PF08988	Protein of unknown function (DUF1895)
AU28_RS08565	PF16693	AU28_RS08565
AU28_RS08570	PF00263	AU28_RS08570
AU28_RS08570	PF03958	Bacterial type II/III secretion system short domain
AU28_RS08580	PF00072	Response regulator receiver domain
AU28_RS08580	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS08580	PF00672	HAMP domain
AU28_RS08580	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS08585	PF00072	Response regulator receiver domain
AU28_RS08585	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS08590	PF13411	MerR HTH family regulatory protein
AU28_RS08595	PF04463	AU28_RS08595
AU28_RS08595	PF08349	AU28_RS08595
AU28_RS08600	PF10965	AU28_RS08600
AU28_RS08605	PF00072	Response regulator receiver domain
AU28_RS08605	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS08610	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS08610	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS08610	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
AU28_RS08615	PF13247	4Fe-4S dicluster domain
AU28_RS08620	PF03916	AU28_RS08620
AU28_RS08625	PF00384	Molybdopterin oxidoreductase
AU28_RS08625	PF01568	Molydopterin dinucleotide binding domain
AU28_RS08625	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AU28_RS08630	PF00294	pfkB family carbohydrate kinase
AU28_RS08630	PF08220	DeoR-like helix-turn-helix domain
AU28_RS08635	PF07090	Protein of unknown function (DUF1355)
AU28_RS08640	PF12697	Alpha/beta hydrolase family
AU28_RS08645	PF13520	Amino acid permease
AU28_RS08650	PF00224	Pyruvate kinase, barrel domain
AU28_RS08650	PF02887	Pyruvate kinase, alpha/beta domain
AU28_RS08655	PF04728	Lipoprotein leucine-zipper
AU28_RS08660	PF04728	Lipoprotein leucine-zipper
AU28_RS08665	PF01476	LysM domain
AU28_RS08665	PF03734	L,D-transpeptidase catalytic domain
AU28_RS08670	PF02657	Fe-S metabolism associated domain
AU28_RS08675	PF00266	Aminotransferase class-V
AU28_RS08680	PF01458	Uncharacterized protein family (UPF0051)
AU28_RS08685	PF00005	ABC transporter
AU28_RS08690	PF01458	Uncharacterized protein family (UPF0051)
AU28_RS08695	PF01521	Iron-sulphur cluster biosynthesis
AU28_RS08700	PF00375	Sodium:dicarboxylate symporter family
AU28_RS08705	PF15930	AU28_RS08705
AU28_RS08710	PF03061	Thioesterase superfamily
AU28_RS08715	PF01565	FAD binding domain
AU28_RS08715	PF02913	FAD linked oxidases, C-terminal domain
AU28_RS08715	PF13183	4Fe-4S dicluster domain
AU28_RS08720	PF01594	AU28_RS08720
AU28_RS08725	PF08965	Domain of unknown function (DUF1870)
AU28_RS08730	PF07690	Major Facilitator Superfamily
AU28_RS08735	PF07690	Major Facilitator Superfamily
AU28_RS08740	PF08501	Shikimate dehydrogenase substrate binding domain
AU28_RS08745	PF01487	Type I 3-dehydroquinase
AU28_RS08750	PF01144	Coenzyme A transferase
AU28_RS08755	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AU28_RS08755	PF02770	Acyl-CoA dehydrogenase, middle domain
AU28_RS08755	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AU28_RS08760	PF07883	Cupin domain
AU28_RS08760	PF12833	Helix-turn-helix domain
AU28_RS08765	PF01012	Electron transfer flavoprotein domain
AU28_RS08775	PF01494	FAD binding domain
AU28_RS08785	PF00501	AMP-binding enzyme
AU28_RS08785	PF13193	AMP-binding enzyme C-terminal domain
AU28_RS08790	PF00391	PEP-utilising enzyme, mobile domain
AU28_RS08790	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
AU28_RS08790	PF02896	PEP-utilising enzyme, TIM barrel domain
AU28_RS08795	PF03618	AU28_RS08795
AU28_RS08800	PF00793	DAHP synthetase I family
AU28_RS08805	PF10636	Hemin uptake protein hemP
AU28_RS08810	PF02696	AU28_RS08810
AU28_RS08815	PF00563	EAL domain
AU28_RS08820	PF00877	NlpC/P60 family
AU28_RS08825	PF00005	ABC transporter
AU28_RS08830	PF00255	Glutathione peroxidase
AU28_RS08835	PF01032	FecCD transport family
AU28_RS08840	PF00216	Bacterial DNA-binding protein
AU28_RS08845	PF01588	Putative tRNA binding domain
AU28_RS08845	PF03147	Ferredoxin-fold anticodon binding domain
AU28_RS08845	PF03483	B3/4 domain
AU28_RS08845	PF03484	tRNA synthetase B5 domain
AU28_RS08850	PF01409	tRNA synthetases class II core domain (F)
AU28_RS08850	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
AU28_RS08855	PF00453	Ribosomal protein L20
AU28_RS08860	PF01632	Ribosomal protein L35
AU28_RS08865	PF00707	Translation initiation factor IF-3, C-terminal domain
AU28_RS08865	PF05198	Translation initiation factor IF-3, N-terminal domain
AU28_RS08870	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AU28_RS08870	PF02824	TGS domain
AU28_RS08870	PF03129	Anticodon binding domain
AU28_RS08870	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AU28_RS08890	PF01223	DNA/RNA non-specific endonuclease
AU28_RS08900	PF09982	Uncharacterized protein conserved in bacteria (DUF2219)
AU28_RS08905	PF04338	Protein of unknown function, DUF481
AU28_RS08910	PF00294	pfkB family carbohydrate kinase
AU28_RS08915	PF11080	Protein of unknown function (DUF2622)
AU28_RS08920	PF03881	Fructosamine kinase
AU28_RS08925	PF14002	AU28_RS08925
AU28_RS08930	PF13419	Haloacid dehalogenase-like hydrolase
AU28_RS08935	PF04307	AU28_RS08935
AU28_RS08940	PF00375	Sodium:dicarboxylate symporter family
AU28_RS08945	PF10729	Cell division activator CedA
AU28_RS08950	PF00199	Catalase
AU28_RS08950	PF06628	Catalase-related immune-responsive
AU28_RS08955	PF04794	YdjC-like protein
AU28_RS08960	PF02056	Family 4 glycosyl hydrolase
AU28_RS08960	PF11975	Family 4 glycosyl hydrolase C-terminal domain
AU28_RS08965	PF07883	Cupin domain
AU28_RS08965	PF12833	Helix-turn-helix domain
AU28_RS08970	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
AU28_RS08975	PF02378	Phosphotransferase system, EIIC
AU28_RS08980	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AU28_RS08985	PF04355	SmpA / OmlA family
AU28_RS08990	PF02540	NAD synthase
AU28_RS09000	PF07813	LTXXQ motif family protein
AU28_RS09005	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AU28_RS09010	PF04996	Succinylarginine dihydrolase
AU28_RS09015	PF00171	Aldehyde dehydrogenase family
AU28_RS09020	PF04958	Arginine N-succinyltransferase beta subunit
AU28_RS09025	PF00202	Aminotransferase class-III
AU28_RS09030	PF03372	Endonuclease/Exonuclease/phosphatase family
AU28_RS09035	PF00293	NUDIX domain
AU28_RS09040	PF07383	AU28_RS09040
AU28_RS09045	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AU28_RS09045	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
AU28_RS09050	PF01131	DNA topoisomerase
AU28_RS09050	PF01751	Toprim domain
AU28_RS09055	PF00586	AIR synthase related protein, N-terminal domain
AU28_RS09055	PF02769	AIR synthase related protein, C-terminal domain
AU28_RS09060	PF00881	Nitroreductase family
AU28_RS09065	PF01343	Peptidase family S49
AU28_RS09070	PF00710	Asparaginase
AU28_RS09075	PF00857	Isochorismatase family
AU28_RS09080	PF00083	Sugar (and other) transporter
AU28_RS09085	PF00455	AU28_RS09085
AU28_RS09085	PF08220	DeoR-like helix-turn-helix domain
AU28_RS09090	PF00248	Aldo/keto reductase family
AU28_RS09095	PF00294	pfkB family carbohydrate kinase
AU28_RS09100	PF01116	Fructose-bisphosphate aldolase class-II
AU28_RS09105	PF00107	Zinc-binding dehydrogenase
AU28_RS09105	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS09110	PF00083	Sugar (and other) transporter
AU28_RS09115	PF00107	Zinc-binding dehydrogenase
AU28_RS09115	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS09120	PF07023	AU28_RS09120
AU28_RS09125	PF01641	SelR domain
AU28_RS09130	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AU28_RS09130	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AU28_RS09135	PF01263	Aldose 1-epimerase
AU28_RS09140	PF00248	Aldo/keto reductase family
AU28_RS09145	PF04055	Radical SAM superfamily
AU28_RS09145	PF13186	Iron-sulfur cluster-binding domain
AU28_RS09145	PF13353	4Fe-4S single cluster domain
AU28_RS09150	PF06629	AU28_RS09150
AU28_RS09155	PF06798	AU28_RS09155
AU28_RS09155	PF08298	PrkA AAA domain
AU28_RS09160	PF04285	AU28_RS09160
AU28_RS09165	PF00990	GGDEF domain
AU28_RS09165	PF17155	AU28_RS09165
AU28_RS09170	PF04073	Aminoacyl-tRNA editing domain
AU28_RS09180	PF04284	AU28_RS09180
AU28_RS09185	PF02311	AraC-like ligand binding domain
AU28_RS09185	PF12833	Helix-turn-helix domain
AU28_RS09190	PF07690	Major Facilitator Superfamily
AU28_RS09195	PF04343	AU28_RS09195
AU28_RS09205	PF03891	AU28_RS09205
AU28_RS09210	PF04226	AU28_RS09210
AU28_RS09225	PF08956	Domain of unknown function (DUF1869)
AU28_RS09230	PF09313	Domain of unknown function (DUF1971)
AU28_RS09235	PF01810	AU28_RS09235
AU28_RS09240	PF01817	Chorismate mutase type II
AU28_RS09245	PF10798	Biofilm development protein YmgB/AriR
AU28_RS09250	PF13411	MerR HTH family regulatory protein
AU28_RS09255	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS09260	PF01909	Nucleotidyltransferase domain
AU28_RS09260	PF13427	AU28_RS09260
AU28_RS09265	PF09223	YodA lipocalin-like domain
AU28_RS09275	PF03860	Domain of Unknown Function (DUF326)
AU28_RS09280	PF00924	Mechanosensitive ion channel
AU28_RS09285	PF00005	ABC transporter
AU28_RS09290	PF00005	ABC transporter
AU28_RS09295	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS09300	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS09305	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AU28_RS09310	PF13146	AU28_RS09310
AU28_RS09315	PF01292	Prokaryotic cytochrome b561
AU28_RS09320	PF13088	BNR repeat-like domain
AU28_RS09330	PF00011	Hsp20/alpha crystallin family
AU28_RS09355	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
AU28_RS09370	PF06316	Enterobacterial Ail/Lom protein
AU28_RS09390	PF00313	'Cold-shock' DNA-binding domain
AU28_RS09395	PF00652	Ricin-type beta-trefoil lectin domain
AU28_RS09400	PF06183	DinI-like family
AU28_RS09415	PF12294	AU28_RS09415
AU28_RS09420	PF00180	Isocitrate/isopropylmalate dehydrogenase
AU28_RS09425	PF00849	RNA pseudouridylate synthase
AU28_RS09435	PF00293	NUDIX domain
AU28_RS09440	PF03054	tRNA methyl transferase
AU28_RS09445	PF04356	Protein of unknown function (DUF489)
AU28_RS09450	PF00206	Lyase
AU28_RS09450	PF08328	Adenylosuccinate lyase C-terminal
AU28_RS09455	PF00072	Response regulator receiver domain
AU28_RS09455	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS09460	PF00672	HAMP domain
AU28_RS09460	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS09460	PF08918	PhoQ Sensor
AU28_RS09465	PF08007	Cupin superfamily protein
AU28_RS09475	PF01546	Peptidase family M20/M25/M40
AU28_RS09475	PF07687	Peptidase dimerisation domain
AU28_RS09480	PF00005	ABC transporter
AU28_RS09480	PF08402	TOBE domain
AU28_RS09485	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS09490	PF06767	Sif protein
AU28_RS09495	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS09500	PF13416	Bacterial extracellular solute-binding protein
AU28_RS09505	PF02146	Sir2 family
AU28_RS09510	PF00480	ROK family
AU28_RS09515	PF02687	AU28_RS09515
AU28_RS09515	PF12704	MacB-like periplasmic core domain
AU28_RS09520	PF00005	ABC transporter
AU28_RS09525	PF02687	AU28_RS09525
AU28_RS09525	PF12704	MacB-like periplasmic core domain
AU28_RS09530	PF00270	DEAD/DEAH box helicase
AU28_RS09530	PF00271	Helicase conserved C-terminal domain
AU28_RS09530	PF02559	CarD-like/TRCF domain
AU28_RS09530	PF03461	TRCF domain
AU28_RS09535	PF01476	LysM domain
AU28_RS09535	PF03734	L,D-transpeptidase catalytic domain
AU28_RS09540	PF07338	Protein of unknown function (DUF1471)
AU28_RS09545	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS09550	PF05433	AU28_RS09550
AU28_RS09555	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS09560	PF05728	Uncharacterised protein family (UPF0227)
AU28_RS09565	PF00933	Glycosyl hydrolase family 3 N terminal domain
AU28_RS09570	PF01636	Phosphotransferase enzyme family
AU28_RS09575	PF13036	Protein of unknown function (DUF3897)
AU28_RS09580	PF07233	Protein of unknown function (DUF1425)
AU28_RS09585	PF01230	HIT domain
AU28_RS09590	PF00593	TonB dependent receptor
AU28_RS09590	PF07715	TonB-dependent Receptor Plug Domain
AU28_RS09595	PF00367	phosphotransferase system, EIIB
AU28_RS09595	PF02378	Phosphotransferase system, EIIC
AU28_RS09600	PF01026	TatD related DNase
AU28_RS09605	PF09115	DNA polymerase III, delta subunit, C terminal
AU28_RS09605	PF13177	DNA polymerase III, delta subunit
AU28_RS09610	PF02223	Thymidylate kinase
AU28_RS09615	PF02618	YceG-like family
AU28_RS09620	PF01063	Aminotransferase class IV
AU28_RS09625	PF00109	Beta-ketoacyl synthase, N-terminal domain
AU28_RS09625	PF02801	Beta-ketoacyl synthase, C-terminal domain
AU28_RS09630	PF00550	Phosphopantetheine attachment site
AU28_RS09635	PF13561	Enoyl-(Acyl carrier protein) reductase
AU28_RS09640	PF00698	Acyl transferase domain
AU28_RS09645	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AU28_RS09645	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AU28_RS09650	PF02504	Fatty acid synthesis protein
AU28_RS09655	PF01783	Ribosomal L32p protein family
AU28_RS09660	PF02620	AU28_RS09660
AU28_RS09665	PF02545	Maf-like protein
AU28_RS09675	PF11254	AU28_RS09675
AU28_RS09680	PF00849	RNA pseudouridylate synthase
AU28_RS09680	PF01479	S4 domain
AU28_RS09685	PF10848	AU28_RS09685
AU28_RS09690	PF00575	S1 RNA binding domain
AU28_RS09690	PF10150	Ribonuclease E/G family
AU28_RS09690	PF12111	Polyribonucleotide phosphorylase C terminal
AU28_RS09695	PF00669	Bacterial flagellin N-terminal helical region
AU28_RS09700	PF00460	Flagella basal body rod protein
AU28_RS09700	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AU28_RS09705	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AU28_RS09705	PF10135	AU28_RS09705
AU28_RS09710	PF02119	AU28_RS09710
AU28_RS09715	PF02107	AU28_RS09715
AU28_RS09720	PF00460	Flagella basal body rod protein
AU28_RS09720	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AU28_RS09725	PF00460	Flagella basal body rod protein
AU28_RS09725	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AU28_RS09730	PF00460	Flagella basal body rod protein
AU28_RS09730	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AU28_RS09730	PF07559	Flagellar basal body protein FlaE
AU28_RS09735	PF03963	AU28_RS09735
AU28_RS09735	PF13860	FlgD Ig-like domain
AU28_RS09735	PF13861	FlgD Tudor-like domain
AU28_RS09740	PF00460	Flagella basal body rod protein
AU28_RS09740	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AU28_RS09745	PF00460	Flagella basal body rod protein
AU28_RS09750	PF13144	SAF-like
AU28_RS09755	PF04316	Anti-sigma-28 factor, FlgM
AU28_RS09760	PF05130	FlgN protein
AU28_RS09765	PF03023	AU28_RS09765
AU28_RS09770	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AU28_RS09775	PF04337	Protein of unknown function, DUF480
AU28_RS09780	PF13302	Acetyltransferase (GNAT) domain
AU28_RS09785	PF07690	Major Facilitator Superfamily
AU28_RS09790	PF04399	Glutaredoxin 2, C terminal domain
AU28_RS09790	PF13417	Glutathione S-transferase, N-terminal domain
AU28_RS09795	PF07273	Protein of unknown function (DUF1439)
AU28_RS09800	PF01979	Amidohydrolase family
AU28_RS09805	PF06183	DinI-like family
AU28_RS09810	PF13991	AU28_RS09810
AU28_RS09815	PF01266	FAD dependent oxidoreductase
AU28_RS09820	PF10968	AU28_RS09820
AU28_RS09825	PF01292	Prokaryotic cytochrome b561
AU28_RS09830	PF04264	YceI-like domain
AU28_RS09835	PF00581	Rhodanese-like domain
AU28_RS09835	PF12368	AU28_RS09835
AU28_RS09840	PF03279	AU28_RS09840
AU28_RS09845	PF07690	Major Facilitator Superfamily
AU28_RS09850	PF13984	AU28_RS09850
AU28_RS09855	PF07119	AU28_RS09855
AU28_RS09860	PF00535	Glycosyl transferase family 2
AU28_RS09865	PF04349	Periplasmic glucan biosynthesis protein, MdoG
AU28_RS09870	PF01757	AU28_RS09870
AU28_RS09875	PF13091	PLD-like domain
AU28_RS09880	PF01661	Macro domain
AU28_RS09890	PF10610	Thin aggregative fimbriae synthesis protein
AU28_RS09895	PF07012	AU28_RS09895
AU28_RS09900	PF07012	AU28_RS09900
AU28_RS09905	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS09910	PF10627	AU28_RS09910
AU28_RS09915	PF10614	AU28_RS09915
AU28_RS09920	PF03783	Curli production assembly/transport component CsgG
AU28_RS09925	PF06496	AU28_RS09925
AU28_RS09930	PF02613	Nitrate reductase delta subunit
AU28_RS09935	PF02811	PHP domain
AU28_RS09940	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AU28_RS09955	PF01527	Transposase
AU28_RS09960	PF01548	AU28_RS09960
AU28_RS09960	PF02371	AU28_RS09960
AU28_RS09980	PF06167	Glucose-regulated metallo-peptidase M90
AU28_RS09990	PF13356	Domain of unknown function (DUF4102)
AU28_RS10005	PF00589	Phage integrase family
AU28_RS10005	PF13356	Domain of unknown function (DUF4102)
AU28_RS10025	PF13676	TIR domain
AU28_RS10030	PF07484	Phage Tail Collar Domain
AU28_RS10035	PF08805	PilS N terminal
AU28_RS10035	PF13544	AU28_RS10035
AU28_RS10040	PF06412	AU28_RS10040
AU28_RS10045	PF03389	MobA/MobL family
AU28_RS10050	PF11185	AU28_RS10050
AU28_RS10065	PF15947	AU28_RS10065
AU28_RS10095	PF05732	AU28_RS10095
AU28_RS10105	PF15948	AU28_RS10105
AU28_RS10110	PF00816	H-NS histone family
AU28_RS10135	PF05930	Prophage CP4-57 regulatory protein (AlpA)
AU28_RS10150	PF12834	AU28_RS10150
AU28_RS10150	PF12835	Integrase
AU28_RS10155	PF07661	AU28_RS10155
AU28_RS10155	PF08238	Sel1 repeat
AU28_RS10170	PF01048	Phosphorylase superfamily
AU28_RS10170	PF10423	Bacterial AMP nucleoside phosphorylase N-terminus
AU28_RS10180	PF07377	Protein of unknown function (DUF1493)
AU28_RS10200	PF01554	MatE
AU28_RS10215	PF03734	L,D-transpeptidase catalytic domain
AU28_RS10220	PF02277	Phosphoribosyltransferase
AU28_RS10225	PF02654	AU28_RS10225
AU28_RS10230	PF02283	Cobinamide kinase / cobinamide phosphate guanyltransferase
AU28_RS10235	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AU28_RS10235	PF07685	CobB/CobQ-like glutamine amidotransferase domain
AU28_RS10240	PF00005	ABC transporter
AU28_RS10245	PF02361	Cobalt transport protein
AU28_RS10250	PF02553	AU28_RS10250
AU28_RS10255	PF01891	Cobalt uptake substrate-specific transmembrane region
AU28_RS10260	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AU28_RS10265	PF06180	Cobalt chelatase (CbiK)
AU28_RS10270	PF02571	AU28_RS10270
AU28_RS10275	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AU28_RS10280	PF01890	Cobalamin synthesis G C-terminus
AU28_RS10280	PF11760	Cobalamin synthesis G N-terminal
AU28_RS10280	PF11761	AU28_RS10280
AU28_RS10285	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AU28_RS10290	PF05175	Methyltransferase small domain
AU28_RS10295	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AU28_RS10300	PF01888	CbiD
AU28_RS10305	PF02570	Precorrin-8X methylmutase
AU28_RS10310	PF03186	AU28_RS10310
AU28_RS10315	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AU28_RS10315	PF07685	CobB/CobQ-like glutamine amidotransferase domain
AU28_RS10320	PF10114	AU28_RS10320
AU28_RS10320	PF12833	Helix-turn-helix domain
AU28_RS10325	PF00230	Major intrinsic protein
AU28_RS10330	PF00936	BMC domain
AU28_RS10335	PF00936	BMC domain
AU28_RS10340	PF02286	Dehydratase large subunit
AU28_RS10345	PF02288	Dehydratase medium subunit
AU28_RS10350	PF02287	Dehydratase small subunit
AU28_RS10355	PF08841	Diol dehydratase reactivase ATPase-like domain
AU28_RS10360	PF02288	Dehydratase medium subunit
AU28_RS10365	PF00936	BMC domain
AU28_RS10370	PF00936	BMC domain
AU28_RS10375	PF06130	AU28_RS10375
AU28_RS10380	PF15953	AU28_RS10380
AU28_RS10385	PF03319	Ethanolamine utilisation protein EutN/carboxysome
AU28_RS10390	PF01923	Cobalamin adenosyltransferase
AU28_RS10390	PF03928	Domain of unknown function (DUF336)
AU28_RS10395	PF00171	Aldehyde dehydrogenase family
AU28_RS10400	PF00465	Iron-containing alcohol dehydrogenase
AU28_RS10405	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
AU28_RS10405	PF10531	SLBB domain
AU28_RS10405	PF13375	RnfC Barrel sandwich hybrid domain
AU28_RS10405	PF13534	4Fe-4S dicluster domain
AU28_RS10410	PF00936	BMC domain
AU28_RS10415	PF00936	BMC domain
AU28_RS10420	PF10662	Ethanolamine utilisation - propanediol utilisation
AU28_RS10425	PF00871	Acetokinase family
AU28_RS10430	PF00288	GHMP kinases N terminal domain
AU28_RS10435	PF04363	AU28_RS10435
AU28_RS10440	PF04632	AU28_RS10440
AU28_RS10445	PF06445	GyrI-like small molecule binding domain
AU28_RS10450	PF00768	D-alanyl-D-alanine carboxypeptidase
AU28_RS10450	PF07943	Penicillin-binding protein 5, C-terminal domain
AU28_RS10455	PF01292	Prokaryotic cytochrome b561
AU28_RS10460	PF12800	4Fe-4S binding domain
AU28_RS10460	PF13247	4Fe-4S dicluster domain
AU28_RS10465	PF00384	Molybdopterin oxidoreductase
AU28_RS10465	PF01568	Molydopterin dinucleotide binding domain
AU28_RS10465	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AU28_RS10470	PF13599	Pentapeptide repeats (9 copies)
AU28_RS10470	PF13979	SopA-like catalytic domain
AU28_RS10470	PF13981	SopA-like central domain
AU28_RS10475	PF00929	Exonuclease
AU28_RS10475	PF08411	Exonuclease C-terminal
AU28_RS10480	PF13520	Amino acid permease
AU28_RS10485	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS10485	PF03466	LysR substrate binding domain
AU28_RS10490	PF01370	NAD dependent epimerase/dehydratase family
AU28_RS10495	PF01634	ATP phosphoribosyltransferase
AU28_RS10495	PF08029	HisG, C-terminal domain
AU28_RS10500	PF00815	Histidinol dehydrogenase
AU28_RS10505	PF00155	Aminotransferase class I and II
AU28_RS10510	PF00475	Imidazoleglycerol-phosphate dehydratase
AU28_RS10510	PF13242	HAD-hyrolase-like
AU28_RS10515	PF00117	Glutamine amidotransferase class-I
AU28_RS10520	PF00977	Histidine biosynthesis protein
AU28_RS10525	PF00977	Histidine biosynthesis protein
AU28_RS10530	PF01502	Phosphoribosyl-AMP cyclohydrolase
AU28_RS10530	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
AU28_RS10535	PF02706	Chain length determinant protein
AU28_RS10540	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
AU28_RS10540	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AU28_RS10545	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
AU28_RS10545	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AU28_RS10550	PF02397	AU28_RS10550
AU28_RS10550	PF13727	CoA-binding domain
AU28_RS10555	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AU28_RS10555	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AU28_RS10555	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AU28_RS10555	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AU28_RS10560	PF00483	Nucleotidyl transferase
AU28_RS10560	PF01050	Mannose-6-phosphate isomerase
AU28_RS10565	PF00535	Glycosyl transferase family 2
AU28_RS10570	PF00534	Glycosyl transferases group 1
AU28_RS10570	PF13439	Glycosyltransferase Family 4
AU28_RS10575	PF00535	Glycosyl transferase family 2
AU28_RS10585	PF16363	AU28_RS10585
AU28_RS10590	PF01370	NAD dependent epimerase/dehydratase family
AU28_RS10595	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
AU28_RS10600	PF16363	AU28_RS10600
AU28_RS10605	PF00483	Nucleotidyl transferase
AU28_RS10610	PF00111	2Fe-2S iron-sulfur cluster binding domain
AU28_RS10610	PF00175	Oxidoreductase NAD-binding domain
AU28_RS10610	PF00970	Oxidoreductase FAD-binding domain
AU28_RS10615	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
AU28_RS10620	PF00483	Nucleotidyl transferase
AU28_RS10625	PF04321	RmlD substrate binding domain
AU28_RS10630	PF16363	AU28_RS10630
AU28_RS10635	PF00483	Nucleotidyl transferase
AU28_RS10645	PF00534	Glycosyl transferases group 1
AU28_RS10645	PF13439	Glycosyltransferase Family 4
AU28_RS10650	PF04230	AU28_RS10650
AU28_RS10655	PF13440	AU28_RS10655
AU28_RS10660	PF02397	AU28_RS10660
AU28_RS10660	PF13727	CoA-binding domain
AU28_RS10665	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AU28_RS10665	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AU28_RS10665	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AU28_RS10665	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AU28_RS10670	PF00483	Nucleotidyl transferase
AU28_RS10670	PF01050	Mannose-6-phosphate isomerase
AU28_RS10675	PF00534	Glycosyl transferases group 1
AU28_RS10675	PF13579	Glycosyl transferase 4-like domain
AU28_RS10680	PF00293	NUDIX domain
AU28_RS10685	PF01370	NAD dependent epimerase/dehydratase family
AU28_RS10690	PF16363	AU28_RS10690
AU28_RS10695	PF00132	Bacterial transferase hexapeptide (six repeats)
AU28_RS10700	PF00535	Glycosyl transferase family 2
AU28_RS10710	PF13439	Glycosyltransferase Family 4
AU28_RS10715	PF00132	Bacterial transferase hexapeptide (six repeats)
AU28_RS10720	PF00535	Glycosyl transferase family 2
AU28_RS10725	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AU28_RS10725	PF02706	Chain length determinant protein
AU28_RS10725	PF13807	AU28_RS10725
AU28_RS10730	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AU28_RS10735	PF02563	Polysaccharide biosynthesis/export protein
AU28_RS10735	PF10531	SLBB domain
AU28_RS10740	PF00571	CBS domain
AU28_RS10740	PF03471	Transporter associated domain
AU28_RS10740	PF03741	AU28_RS10740
AU28_RS10745	PF05170	AU28_RS10745
AU28_RS10750	PF00692	dUTPase
AU28_RS10755	PF00485	Phosphoribulokinase / Uridine kinase family
AU28_RS10760	PF00563	EAL domain
AU28_RS10760	PF00990	GGDEF domain
AU28_RS10760	PF05231	AU28_RS10760
AU28_RS10760	PF08447	PAS fold
AU28_RS10760	PF08448	PAS fold
AU28_RS10765	PF00730	HhH-GPD superfamily base excision DNA repair protein
AU28_RS10765	PF06029	AlkA N-terminal domain
AU28_RS10770	PF00012	Hsp70 protein
AU28_RS10775	PF13437	HlyD family secretion protein
AU28_RS10775	PF13533	Biotin-lipoyl like
AU28_RS10780	PF00873	AcrB/AcrD/AcrF family
AU28_RS10785	PF00873	AcrB/AcrD/AcrF family
AU28_RS10790	PF07690	Major Facilitator Superfamily
AU28_RS10795	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS10795	PF00672	HAMP domain
AU28_RS10795	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS10800	PF00072	Response regulator receiver domain
AU28_RS10800	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS10810	PF06889	AU28_RS10810
AU28_RS10815	PF13226	AU28_RS10815
AU28_RS10820	PF01136	AU28_RS10820
AU28_RS10820	PF16325	AU28_RS10820
AU28_RS10825	PF05932	Tir chaperone protein (CesT) family
AU28_RS10840	PF00781	Diacylglycerol kinase catalytic domain
AU28_RS10845	PF01791	DeoC/LacD family aldolase
AU28_RS10850	PF03825	AU28_RS10850
AU28_RS10855	PF03747	ADP-ribosylglycohydrolase
AU28_RS10860	PF00294	pfkB family carbohydrate kinase
AU28_RS10865	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS10865	PF07702	UTRA domain
AU28_RS10870	PF08543	Phosphomethylpyrimidine kinase
AU28_RS10875	PF02110	Hydroxyethylthiazole kinase family
AU28_RS10880	PF11776	Domain of unknown function (DUF3315)
AU28_RS10885	PF00419	Fimbrial protein
AU28_RS10890	PF00577	Outer membrane usher protein
AU28_RS10890	PF13953	PapC C-terminal domain
AU28_RS10890	PF13954	PapC N-terminal domain
AU28_RS10895	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS10900	PF00419	Fimbrial protein
AU28_RS10905	PF10836	AU28_RS10905
AU28_RS10910	PF10609	ParA/MinD ATPase like
AU28_RS10915	PF01588	Putative tRNA binding domain
AU28_RS10915	PF09334	tRNA synthetases class I (M)
AU28_RS10920	PF06998	Protein of unknown function (DUF1307)
AU28_RS10925	PF06998	Protein of unknown function (DUF1307)
AU28_RS10930	PF07308	AU28_RS10930
AU28_RS10935	PF00072	Response regulator receiver domain
AU28_RS10935	PF04397	LytTr DNA-binding domain
AU28_RS10940	PF06580	AU28_RS10940
AU28_RS10940	PF07694	5TMR of 5TMR-LYT
AU28_RS10940	PF13185	GAF domain
AU28_RS10945	PF13411	MerR HTH family regulatory protein
AU28_RS10955	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS10960	PF00005	ABC transporter
AU28_RS10965	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS10970	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AU28_RS10975	PF00933	Glycosyl hydrolase family 3 N terminal domain
AU28_RS10975	PF01915	Glycosyl hydrolase family 3 C-terminal domain
AU28_RS10975	PF14310	Fibronectin type III-like domain
AU28_RS10980	PF01565	FAD binding domain
AU28_RS10980	PF09330	D-lactate dehydrogenase, membrane binding
AU28_RS10985	PF00768	D-alanyl-D-alanine carboxypeptidase
AU28_RS10990	PF06930	AU28_RS10990
AU28_RS10995	PF09335	AU28_RS10995
AU28_RS11000	PF13561	Enoyl-(Acyl carrier protein) reductase
AU28_RS11005	PF02321	Outer membrane efflux protein
AU28_RS11010	PF01207	Dihydrouridine synthase (Dus)
AU28_RS11015	PF01494	FAD binding domain
AU28_RS11020	PF13417	Glutathione S-transferase, N-terminal domain
AU28_RS11020	PF14497	Glutathione S-transferase, C-terminal domain
AU28_RS11025	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AU28_RS11030	PF07883	Cupin domain
AU28_RS11035	PF07690	Major Facilitator Superfamily
AU28_RS11040	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS11040	PF03466	LysR substrate binding domain
AU28_RS11045	PF03788	AU28_RS11045
AU28_RS11050	PF04172	AU28_RS11050
AU28_RS11055	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AU28_RS11055	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
AU28_RS11060	PF02698	DUF218 domain
AU28_RS11065	PF10808	AU28_RS11065
AU28_RS11070	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS11070	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AU28_RS11075	PF01180	Dihydroorotate dehydrogenase
AU28_RS11075	PF14697	4Fe-4S dicluster domain
AU28_RS11080	PF02653	AU28_RS11080
AU28_RS11085	PF00005	ABC transporter
AU28_RS11090	PF13407	Periplasmic binding protein domain
AU28_RS11095	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS11095	PF13377	Periplasmic binding protein-like domain
AU28_RS11100	PF04235	AU28_RS11100
AU28_RS11105	PF01227	GTP cyclohydrolase I
AU28_RS11110	PF00756	Putative esterase
AU28_RS11115	PF01381	Helix-turn-helix
AU28_RS11120	PF03313	AU28_RS11120
AU28_RS11120	PF03315	Serine dehydratase beta chain
AU28_RS11125	PF12710	haloacid dehalogenase-like hydrolase
AU28_RS11130	PF07690	Major Facilitator Superfamily
AU28_RS11135	PF00593	TonB dependent receptor
AU28_RS11135	PF07715	TonB-dependent Receptor Plug Domain
AU28_RS11140	PF00324	Amino acid permease
AU28_RS11145	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS11145	PF03466	LysR substrate binding domain
AU28_RS11150	PF03601	AU28_RS11150
AU28_RS11155	PF01261	Xylose isomerase-like TIM barrel
AU28_RS11160	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AU28_RS11160	PF02378	Phosphotransferase system, EIIC
AU28_RS11165	PF00294	pfkB family carbohydrate kinase
AU28_RS11170	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AU28_RS11170	PF00381	PTS HPr component phosphorylation site
AU28_RS11175	PF07690	Major Facilitator Superfamily
AU28_RS11180	PF13807	AU28_RS11180
AU28_RS11190	PF03692	AU28_RS11190
AU28_RS11195	PF01132	Elongation factor P (EF-P) OB domain
AU28_RS11195	PF08207	Elongation factor P (EF-P) KOW-like domain
AU28_RS11195	PF09285	Elongation factor P, C-terminal
AU28_RS11200	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AU28_RS11200	PF07683	Cobalamin synthesis protein cobW C-terminal domain
AU28_RS11205	PF01569	PAP2 superfamily
AU28_RS11210	PF00877	NlpC/P60 family
AU28_RS11215	PF00563	EAL domain
AU28_RS11215	PF12792	AU28_RS11215
AU28_RS11220	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AU28_RS11225	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS11230	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS11230	PF12911	AU28_RS11230
AU28_RS11235	PF00005	ABC transporter
AU28_RS11235	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AU28_RS11240	PF13989	AU28_RS11240
AU28_RS11250	PF07690	Major Facilitator Superfamily
AU28_RS11255	PF00849	RNA pseudouridylate synthase
AU28_RS11255	PF01479	S4 domain
AU28_RS11260	PF00271	Helicase conserved C-terminal domain
AU28_RS11260	PF04851	Type III restriction enzyme, res subunit
AU28_RS11265	PF01386	Ribosomal L25p family
AU28_RS11275	PF04245	AU28_RS11275
AU28_RS11280	PF07208	Protein of unknown function (DUF1414)
AU28_RS11285	PF00884	Sulfatase
AU28_RS11285	PF11893	AU28_RS11285
AU28_RS11295	PF12468	Type III secretion system leucine rich repeat protein
AU28_RS11295	PF14496	C-terminal novel E3 ligase, LRR-interacting
AU28_RS11320	PF09411	Lipid A 3-O-deacylase (PagL)
AU28_RS11325	PF00072	Response regulator receiver domain
AU28_RS11325	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS11330	PF03918	Cytochrome C biogenesis protein
AU28_RS11330	PF14559	Tetratricopeptide repeat
AU28_RS11335	PF08534	Redoxin
AU28_RS11340	PF01578	AU28_RS11340
AU28_RS11340	PF16327	AU28_RS11340
AU28_RS11345	PF03100	CcmE
AU28_RS11350	PF04995	AU28_RS11350
AU28_RS11355	PF01578	AU28_RS11355
AU28_RS11360	PF03379	AU28_RS11360
AU28_RS11365	PF00005	ABC transporter
AU28_RS11370	PF03264	NapC/NirT cytochrome c family, N-terminal region
AU28_RS11375	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
AU28_RS11380	PF12801	AU28_RS11380
AU28_RS11385	PF12800	4Fe-4S binding domain
AU28_RS11385	PF12838	4Fe-4S dicluster domain
AU28_RS11390	PF00384	Molybdopterin oxidoreductase
AU28_RS11390	PF01568	Molydopterin dinucleotide binding domain
AU28_RS11390	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AU28_RS11395	PF03927	NapD protein
AU28_RS11400	PF12838	4Fe-4S dicluster domain
AU28_RS11400	PF13187	4Fe-4S dicluster domain
AU28_RS11405	PF03974	Ecotin
AU28_RS11410	PF00005	ABC transporter
AU28_RS11415	PF13532	2OG-Fe(II) oxygenase superfamily
AU28_RS11420	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AU28_RS11420	PF02805	Metal binding domain of Ada
AU28_RS11420	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
AU28_RS11420	PF12833	Helix-turn-helix domain
AU28_RS11425	PF02424	ApbE family
AU28_RS11430	PF00267	Gram-negative porin
AU28_RS11435	PF01627	Hpt domain
AU28_RS11435	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS11435	PF16359	AU28_RS11435
AU28_RS11440	PF00072	Response regulator receiver domain
AU28_RS11440	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS11445	PF00072	Response regulator receiver domain
AU28_RS11445	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS11445	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS11445	PF09456	RcsC Alpha-Beta-Loop (ABL)
AU28_RS11450	PF00521	DNA gyrase/topoisomerase IV, subunit A
AU28_RS11450	PF03989	DNA gyrase C-terminal domain, beta-propeller
AU28_RS11455	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AU28_RS11455	PF13378	Enolase C-terminal domain-like
AU28_RS11460	PF07690	Major Facilitator Superfamily
AU28_RS11465	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS11465	PF07729	FCD domain
AU28_RS11470	PF13489	Methyltransferase domain
AU28_RS11475	PF00317	Ribonucleotide reductase, all-alpha domain
AU28_RS11475	PF02867	Ribonucleotide reductase, barrel domain
AU28_RS11475	PF03477	ATP cone domain
AU28_RS11480	PF00268	Ribonucleotide reductase, small chain
AU28_RS11485	PF00111	2Fe-2S iron-sulfur cluster binding domain
AU28_RS11490	PF07690	Major Facilitator Superfamily
AU28_RS11495	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS11495	PF03466	LysR substrate binding domain
AU28_RS11500	PF03009	Glycerophosphoryl diester phosphodiesterase family
AU28_RS11505	PF07690	Major Facilitator Superfamily
AU28_RS11510	PF01266	FAD dependent oxidoreductase
AU28_RS11510	PF04324	BFD-like [2Fe-2S] binding domain
AU28_RS11515	PF00890	FAD binding domain
AU28_RS11520	PF02754	AU28_RS11520
AU28_RS11520	PF13183	4Fe-4S dicluster domain
AU28_RS11535	PF03328	HpcH/HpaI aldolase/citrate lyase family
AU28_RS11540	PF07690	Major Facilitator Superfamily
AU28_RS11545	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AU28_RS11545	PF13378	Enolase C-terminal domain-like
AU28_RS11550	PF01614	Bacterial transcriptional regulator
AU28_RS11550	PF09339	IclR helix-turn-helix domain
AU28_RS11555	PF00994	Probable molybdopterin binding domain
AU28_RS11560	PF07437	AU28_RS11560
AU28_RS11565	PF00293	NUDIX domain
AU28_RS11570	PF00300	Histidine phosphatase superfamily (branch 1)
AU28_RS11575	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
AU28_RS11580	PF00535	Glycosyl transferase family 2
AU28_RS11585	PF00551	Formyl transferase
AU28_RS11585	PF01370	NAD dependent epimerase/dehydratase family
AU28_RS11585	PF02911	Formyl transferase, C-terminal domain
AU28_RS11590	PF01522	Polysaccharide deacetylase
AU28_RS11595	PF02366	AU28_RS11595
AU28_RS11600	PF00892	EamA-like transporter family
AU28_RS11610	PF11183	Polymyxin resistance protein PmrD
AU28_RS11615	PF00501	AMP-binding enzyme
AU28_RS11615	PF13193	AMP-binding enzyme C-terminal domain
AU28_RS11620	PF13378	Enolase C-terminal domain-like
AU28_RS11625	PF00378	Enoyl-CoA hydratase/isomerase family
AU28_RS11630	PF12697	Alpha/beta hydrolase family
AU28_RS11635	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AU28_RS11635	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AU28_RS11635	PF16582	AU28_RS11635
AU28_RS11640	PF00425	chorismate binding enzyme
AU28_RS11645	PF05957	AU28_RS11645
AU28_RS11650	PF13673	Acetyltransferase (GNAT) domain
AU28_RS11655	PF12706	Beta-lactamase superfamily domain
AU28_RS11660	PF00072	Response regulator receiver domain
AU28_RS11660	PF01584	CheW-like domain
AU28_RS11665	PF00092	von Willebrand factor type A domain
AU28_RS11665	PF12034	AU28_RS11665
AU28_RS11665	PF12450	AU28_RS11665
AU28_RS11670	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AU28_RS11675	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AU28_RS11680	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AU28_RS11680	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
AU28_RS11685	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
AU28_RS11690	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
AU28_RS11695	PF12838	4Fe-4S dicluster domain
AU28_RS11700	PF00146	NADH dehydrogenase
AU28_RS11705	PF00384	Molybdopterin oxidoreductase
AU28_RS11705	PF01568	Molydopterin dinucleotide binding domain
AU28_RS11705	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AU28_RS11705	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AU28_RS11705	PF13510	2Fe-2S iron-sulfur cluster binding domain
AU28_RS11710	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
AU28_RS11710	PF10531	SLBB domain
AU28_RS11710	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
AU28_RS11715	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
AU28_RS11720	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
AU28_RS11720	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
AU28_RS11725	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
AU28_RS11730	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
AU28_RS11740	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS11740	PF03466	LysR substrate binding domain
AU28_RS11750	PF00155	Aminotransferase class I and II
AU28_RS11755	PF13023	HD domain
AU28_RS11760	PF02080	TrkA-C domain
AU28_RS11760	PF03600	Citrate transporter
AU28_RS11765	PF13419	Haloacid dehalogenase-like hydrolase
AU28_RS11770	PF03887	YfbU domain
AU28_RS11775	PF04217	AU28_RS11775
AU28_RS11780	PF00871	Acetokinase family
AU28_RS11785	PF01515	Phosphate acetyl/butaryl transferase
AU28_RS11785	PF07085	DRTGG domain
AU28_RS11785	PF13500	AAA domain
AU28_RS11790	PF03606	AU28_RS11790
AU28_RS11795	PF02779	Transketolase, pyrimidine binding domain
AU28_RS11795	PF02780	Transketolase, C-terminal domain
AU28_RS11800	PF00456	Transketolase, thiamine diphosphate binding domain
AU28_RS11805	PF03611	AU28_RS11805
AU28_RS11810	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AU28_RS11815	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AU28_RS11825	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS11825	PF13377	Periplasmic binding protein-like domain
AU28_RS11830	PF00293	NUDIX domain
AU28_RS11835	PF12850	Calcineurin-like phosphoesterase superfamily domain
AU28_RS11840	PF13417	Glutathione S-transferase, N-terminal domain
AU28_RS11840	PF14834	Glutathione S-transferase, C-terminal domain
AU28_RS11845	PF00043	Glutathione S-transferase, C-terminal domain
AU28_RS11845	PF13417	Glutathione S-transferase, N-terminal domain
AU28_RS11850	PF01370	NAD dependent epimerase/dehydratase family
AU28_RS11850	PF08338	Domain of unknown function (DUF1731)
AU28_RS11855	PF00005	ABC transporter
AU28_RS11860	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS11865	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS11870	PF00497	Bacterial extracellular solute-binding proteins, family 3
AU28_RS11875	PF00497	Bacterial extracellular solute-binding proteins, family 3
AU28_RS11880	PF02441	Flavoprotein
AU28_RS11885	PF00324	Amino acid permease
AU28_RS11890	PF01168	Alanine racemase, N-terminal domain
AU28_RS11895	PF13520	Amino acid permease
AU28_RS11900	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AU28_RS11900	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AU28_RS11905	PF00158	Sigma-54 interaction domain
AU28_RS11905	PF02954	Bacterial regulatory protein, Fis family
AU28_RS11905	PF08448	PAS fold
AU28_RS11910	PF00156	Phosphoribosyl transferase domain
AU28_RS11910	PF13522	Glutamine amidotransferase domain
AU28_RS11915	PF02674	AU28_RS11915
AU28_RS11920	PF05036	Sporulation related domain
AU28_RS11925	PF02875	Mur ligase family, glutamate ligase domain
AU28_RS11925	PF08245	Mur ligase middle domain
AU28_RS11930	PF01039	Carboxyl transferase domain
AU28_RS11935	PF09335	AU28_RS11935
AU28_RS11940	PF01416	tRNA pseudouridine synthase
AU28_RS11945	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AU28_RS11945	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AU28_RS11950	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AU28_RS11950	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AU28_RS11950	PF11890	Domain of unknown function (DUF3410)
AU28_RS11960	PF07690	Major Facilitator Superfamily
AU28_RS11970	PF13693	Winged helix-turn-helix DNA-binding
AU28_RS11975	PF00877	NlpC/P60 family
AU28_RS11980	PF12883	Protein of unknown function (DUF3828)
AU28_RS11985	PF02517	CAAX protease self-immunity
AU28_RS11990	PF00109	Beta-ketoacyl synthase, N-terminal domain
AU28_RS11990	PF02801	Beta-ketoacyl synthase, C-terminal domain
AU28_RS11995	PF01266	FAD dependent oxidoreductase
AU28_RS11995	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
AU28_RS12000	PF08891	AU28_RS12000
AU28_RS12005	PF04315	AU28_RS12005
AU28_RS12010	PF01925	AU28_RS12010
AU28_RS12015	PF03411	Penicillin-insensitive murein endopeptidase
AU28_RS12020	PF01264	Chorismate synthase
AU28_RS12025	PF05175	Methyltransferase small domain
AU28_RS12030	PF01713	Smr domain
AU28_RS12035	PF00300	Histidine phosphatase superfamily (branch 1)
AU28_RS12040	PF00378	Enoyl-CoA hydratase/isomerase family
AU28_RS12040	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AU28_RS12040	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AU28_RS12045	PF00108	Thiolase, N-terminal domain
AU28_RS12045	PF02803	Thiolase, C-terminal domain
AU28_RS12050	PF04175	Protein of unknown function (DUF406)
AU28_RS12055	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AU28_RS12060	PF04333	AU28_RS12060
AU28_RS12065	PF01226	Formate/nitrite transporter
AU28_RS12075	PF04138	AU28_RS12075
AU28_RS12080	PF00535	Glycosyl transferase family 2
AU28_RS12085	PF01757	AU28_RS12085
AU28_RS12090	PF00872	AU28_RS12090
AU28_RS12095	PF01278	Omptin family
AU28_RS12100	PF00072	Response regulator receiver domain
AU28_RS12100	PF02954	Bacterial regulatory protein, Fis family
AU28_RS12100	PF14532	Sigma-54 interaction domain
AU28_RS12105	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS12105	PF00672	HAMP domain
AU28_RS12105	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS12110	PF13343	Bacterial extracellular solute-binding protein
AU28_RS12115	PF07690	Major Facilitator Superfamily
AU28_RS12120	PF10810	AU28_RS12120
AU28_RS12130	PF03279	AU28_RS12130
AU28_RS12135	PF00155	Aminotransferase class I and II
AU28_RS12140	PF02685	Glucokinase
AU28_RS12145	PF00654	Voltage gated chloride channel
AU28_RS12150	PF00205	Thiamine pyrophosphate enzyme, central domain
AU28_RS12150	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AU28_RS12150	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AU28_RS12155	PF00248	Aldo/keto reductase family
AU28_RS12160	PF10697	AU28_RS12160
AU28_RS12165	PF01566	AU28_RS12165
AU28_RS12170	PF01773	Na+ dependent nucleoside transporter N-terminus
AU28_RS12170	PF07662	Na+ dependent nucleoside transporter C-terminus
AU28_RS12170	PF07670	Nucleoside recognition
AU28_RS12175	PF00563	EAL domain
AU28_RS12175	PF00990	GGDEF domain
AU28_RS12175	PF05231	AU28_RS12175
AU28_RS12190	PF07037	AU28_RS12190
AU28_RS12195	PF07037	AU28_RS12195
AU28_RS12200	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AU28_RS12225	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS12225	PF03466	LysR substrate binding domain
AU28_RS12235	PF03825	AU28_RS12235
AU28_RS12240	PF01048	Phosphorylase superfamily
AU28_RS12245	PF03502	Nucleoside-specific channel-forming protein, Tsx
AU28_RS12250	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS12250	PF03466	LysR substrate binding domain
AU28_RS12255	PF13593	SBF-like CPA transporter family (DUF4137)
AU28_RS12260	PF12843	AU28_RS12260
AU28_RS12265	PF00533	BRCA1 C Terminus (BRCT) domain
AU28_RS12265	PF01653	NAD-dependent DNA ligase adenylation domain
AU28_RS12265	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
AU28_RS12265	PF03120	NAD-dependent DNA ligase OB-fold domain
AU28_RS12265	PF12826	Helix-hairpin-helix motif
AU28_RS12265	PF14520	Helix-hairpin-helix domain
AU28_RS12270	PF04354	ZipA, C-terminal FtsZ-binding domain
AU28_RS12275	PF07264	Etoposide-induced protein 2
AU28_RS12280	PF00291	Pyridoxal-phosphate dependent enzyme
AU28_RS12290	PF00381	PTS HPr component phosphorylation site
AU28_RS12295	PF00391	PEP-utilising enzyme, mobile domain
AU28_RS12295	PF02896	PEP-utilising enzyme, TIM barrel domain
AU28_RS12295	PF05524	PEP-utilising enzyme, N-terminal
AU28_RS12300	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
AU28_RS12310	PF08543	Phosphomethylpyrimidine kinase
AU28_RS12315	PF00155	Aminotransferase class I and II
AU28_RS12315	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS12320	PF00117	Glutamine amidotransferase class-I
AU28_RS12330	PF08238	Sel1 repeat
AU28_RS12335	PF00291	Pyridoxal-phosphate dependent enzyme
AU28_RS12340	PF00005	ABC transporter
AU28_RS12345	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS12350	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS12355	PF13531	Bacterial extracellular solute-binding protein
AU28_RS12360	PF13561	Enoyl-(Acyl carrier protein) reductase
AU28_RS12365	PF04261	Dyp-type peroxidase family
AU28_RS12370	PF06572	Protein of unknown function (DUF1131)
AU28_RS12375	PF11143	AU28_RS12375
AU28_RS12380	PF00583	Acetyltransferase (GNAT) family
AU28_RS12385	PF01520	N-acetylmuramoyl-L-alanine amidase
AU28_RS12390	PF01218	Coproporphyrinogen III oxidase
AU28_RS12400	PF12833	Helix-turn-helix domain
AU28_RS12405	PF00936	BMC domain
AU28_RS12405	PF16365	AU28_RS12405
AU28_RS12410	PF00936	BMC domain
AU28_RS12415	PF05985	Ethanolamine ammonia-lyase light chain (EutC)
AU28_RS12420	PF06751	Ethanolamine ammonia lyase large subunit (EutB)
AU28_RS12425	PF06277	Ethanolamine utilisation protein EutA
AU28_RS12430	PF04346	AU28_RS12430
AU28_RS12435	PF00465	Iron-containing alcohol dehydrogenase
AU28_RS12440	PF14450	Cell division protein FtsA
AU28_RS12445	PF00171	Aldehyde dehydrogenase family
AU28_RS12450	PF03319	Ethanolamine utilisation protein EutN/carboxysome
AU28_RS12455	PF00936	BMC domain
AU28_RS12460	PF01515	Phosphate acetyl/butaryl transferase
AU28_RS12465	PF01923	Cobalamin adenosyltransferase
AU28_RS12470	PF06249	Ethanolamine utilisation protein EutQ
AU28_RS12475	PF10662	Ethanolamine utilisation - propanediol utilisation
AU28_RS12480	PF00936	BMC domain
AU28_RS12485	PF00390	Malic enzyme, N-terminal domain
AU28_RS12485	PF01515	Phosphate acetyl/butaryl transferase
AU28_RS12485	PF03949	Malic enzyme, NAD binding domain
AU28_RS12490	PF00923	Transaldolase
AU28_RS12495	PF00456	Transketolase, thiamine diphosphate binding domain
AU28_RS12495	PF02779	Transketolase, pyrimidine binding domain
AU28_RS12495	PF02780	Transketolase, C-terminal domain
AU28_RS12505	PF06674	AU28_RS12505
AU28_RS12510	PF00293	NUDIX domain
AU28_RS12515	PF00144	Beta-lactamase
AU28_RS12520	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS12520	PF13247	4Fe-4S dicluster domain
AU28_RS12520	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AU28_RS12525	PF00672	HAMP domain
AU28_RS12525	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS12525	PF07730	Histidine kinase
AU28_RS12525	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
AU28_RS12530	PF00873	AcrB/AcrD/AcrF family
AU28_RS12535	PF03960	ArsC family
AU28_RS12540	PF01546	Peptidase family M20/M25/M40
AU28_RS12540	PF07687	Peptidase dimerisation domain
AU28_RS12545	PF13980	AU28_RS12545
AU28_RS12550	PF05127	Helicase
AU28_RS12550	PF08351	Domain of unknown function (DUF1726)
AU28_RS12550	PF13718	GNAT acetyltransferase 2
AU28_RS12550	PF17176	AU28_RS12550
AU28_RS12555	PF04228	AU28_RS12555
AU28_RS12560	PF01259	SAICAR synthetase
AU28_RS12565	PF06804	NlpB/DapX lipoprotein
AU28_RS12570	PF00701	Dihydrodipicolinate synthetase family
AU28_RS12575	PF13740	ACT domain
AU28_RS12580	PF00578	AhpC/TSA family
AU28_RS12585	PF02595	Glycerate kinase family
AU28_RS12590	PF02447	AU28_RS12590
AU28_RS12595	PF05651	AU28_RS12595
AU28_RS12595	PF13556	PucR C-terminal helix-turn-helix domain
AU28_RS12600	PF01594	AU28_RS12600
AU28_RS12605	PF01435	Peptidase family M48
AU28_RS12605	PF14559	Tetratricopeptide repeat
AU28_RS12610	PF03960	ArsC family
AU28_RS12615	PF00308	Bacterial dnaA  protein
AU28_RS12620	PF00860	Permease family
AU28_RS12625	PF14681	Uracil phosphoribosyltransferase
AU28_RS12630	PF00586	AIR synthase related protein, N-terminal domain
AU28_RS12630	PF02769	AIR synthase related protein, C-terminal domain
AU28_RS12635	PF00551	Formyl transferase
AU28_RS12640	PF02503	Polyphosphate kinase middle domain
AU28_RS12640	PF13089	Polyphosphate kinase N-terminal domain
AU28_RS12640	PF13090	Polyphosphate kinase C-terminal domain
AU28_RS12645	PF02541	Ppx/GppA phosphatase family
AU28_RS12650	PF00563	EAL domain
AU28_RS12650	PF05231	AU28_RS12650
AU28_RS12660	PF11119	AU28_RS12660
AU28_RS12670	PF07377	Protein of unknown function (DUF1493)
AU28_RS12675	PF00665	Integrase core domain
AU28_RS12680	PF00117	Glutamine amidotransferase class-I
AU28_RS12680	PF00958	GMP synthase C terminal domain
AU28_RS12680	PF02540	NAD synthase
AU28_RS12685	PF00478	IMP dehydrogenase / GMP reductase domain
AU28_RS12685	PF00571	CBS domain
AU28_RS12690	PF02601	AU28_RS12690
AU28_RS12690	PF13742	AU28_RS12690
AU28_RS12695	PF03797	Autotransporter beta-domain
AU28_RS12695	PF12951	AU28_RS12695
AU28_RS12700	PF05688	AU28_RS12700
AU28_RS12700	PF05689	AU28_RS12700
AU28_RS12705	PF05688	AU28_RS12705
AU28_RS12705	PF05689	AU28_RS12705
AU28_RS12715	PF11924	Protein of unknown function (DUF3442)
AU28_RS12720	PF07191	zinc-ribbons
AU28_RS12725	PF01926	50S ribosome-binding GTPase
AU28_RS12725	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
AU28_RS12730	PF13360	PQQ-like domain
AU28_RS12735	PF09976	Tetratricopeptide repeat
AU28_RS12740	PF03129	Anticodon binding domain
AU28_RS12740	PF13393	Histidyl-tRNA synthetase
AU28_RS12745	PF04551	GcpE protein
AU28_RS12750	PF13413	Helix-turn-helix domain
AU28_RS12750	PF13464	AU28_RS12750
AU28_RS12755	PF04055	Radical SAM superfamily
AU28_RS12760	PF00334	Nucleoside diphosphate kinase
AU28_RS12765	PF00037	4Fe-4S binding domain
AU28_RS12765	PF13187	4Fe-4S dicluster domain
AU28_RS12770	PF04976	AU28_RS12770
AU28_RS12775	PF12800	4Fe-4S binding domain
AU28_RS12775	PF13247	4Fe-4S dicluster domain
AU28_RS12780	PF00384	Molybdopterin oxidoreductase
AU28_RS12780	PF01568	Molydopterin dinucleotide binding domain
AU28_RS12780	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AU28_RS12785	PF00905	Penicillin binding protein transpeptidase domain
AU28_RS12785	PF00912	Transglycosylase
AU28_RS12785	PF06832	AU28_RS12785
AU28_RS12790	PF00207	Alpha-2-macroglobulin family
AU28_RS12790	PF01835	MG2 domain
AU28_RS12790	PF07703	Alpha-2-macroglobulin family N-terminal region
AU28_RS12790	PF10569	Alpha-macro-globulin thiol-ester bond-forming region
AU28_RS12790	PF11974	Alpha-2-macroglobulin MG1 domain
AU28_RS12795	PF00581	Rhodanese-like domain
AU28_RS12800	PF16728	AU28_RS12800
AU28_RS12805	PF07179	AU28_RS12805
AU28_RS12805	PF14581	AU28_RS12805
AU28_RS12810	PF00883	Cytosol aminopeptidase family, catalytic domain
AU28_RS12810	PF12404	AU28_RS12810
AU28_RS12815	PF04384	Iron-sulphur cluster assembly
AU28_RS12820	PF00111	2Fe-2S iron-sulfur cluster binding domain
AU28_RS12825	PF00012	Hsp70 protein
AU28_RS12830	PF07743	HSCB C-terminal oligomerisation domain
AU28_RS12835	PF01521	Iron-sulphur cluster biosynthesis
AU28_RS12840	PF01592	NifU-like N terminal domain
AU28_RS12845	PF00266	Aminotransferase class-V
AU28_RS12850	PF02082	Transcriptional regulator
AU28_RS12855	PF00588	SpoU rRNA Methylase family
AU28_RS12860	PF00459	Inositol monophosphatase family
AU28_RS12865	PF12146	Putative lysophospholipase
AU28_RS12875	PF00175	Oxidoreductase NAD-binding domain
AU28_RS12875	PF10418	Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B
AU28_RS12880	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AU28_RS12880	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AU28_RS12880	PF14697	4Fe-4S dicluster domain
AU28_RS12885	PF03824	AU28_RS12885
AU28_RS12890	PF06226	AU28_RS12890
AU28_RS12895	PF00874	PRD domain
AU28_RS12900	PF12832	MFS_1 like family
AU28_RS12905	PF00464	Serine hydroxymethyltransferase
AU28_RS12910	PF00042	Globin
AU28_RS12910	PF00175	Oxidoreductase NAD-binding domain
AU28_RS12910	PF00970	Oxidoreductase FAD-binding domain
AU28_RS12915	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS12920	PF13520	Amino acid permease
AU28_RS12925	PF01276	Orn/Lys/Arg decarboxylase, major domain
AU28_RS12925	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AU28_RS12925	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AU28_RS12930	PF00854	POT family
AU28_RS12935	PF00543	Nitrogen regulatory protein P-II
AU28_RS12940	PF00072	Response regulator receiver domain
AU28_RS12940	PF00158	Sigma-54 interaction domain
AU28_RS12945	PF13942	AU28_RS12945
AU28_RS12950	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS12950	PF00672	HAMP domain
AU28_RS12950	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS12955	PF02769	AIR synthase related protein, C-terminal domain
AU28_RS12955	PF13507	CobB/CobQ-like glutamine amidotransferase domain
AU28_RS12965	PF00497	Bacterial extracellular solute-binding proteins, family 3
AU28_RS12965	PF01464	Transglycosylase SLT domain
AU28_RS12970	PF14437	AU28_RS12970
AU28_RS12975	PF12710	haloacid dehalogenase-like hydrolase
AU28_RS12980	PF00367	phosphotransferase system, EIIB
AU28_RS12980	PF02378	Phosphotransferase system, EIIC
AU28_RS12985	PF01380	SIS domain
AU28_RS12990	PF01380	SIS domain
AU28_RS12990	PF01418	Helix-turn-helix domain, rpiR family
AU28_RS12995	PF02558	Ketopantoate reductase PanE/ApbA
AU28_RS12995	PF08546	Ketopantoate reductase PanE/ApbA C terminal
AU28_RS13000	PF07690	Major Facilitator Superfamily
AU28_RS13005	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS13005	PF03466	LysR substrate binding domain
AU28_RS13010	PF00037	4Fe-4S binding domain
AU28_RS13015	PF01648	4'-phosphopantetheinyl transferase superfamily
AU28_RS13020	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
AU28_RS13025	PF02565	Recombination protein O C terminal
AU28_RS13025	PF11967	Recombination protein O N terminal
AU28_RS13030	PF01926	50S ribosome-binding GTPase
AU28_RS13030	PF07650	KH domain
AU28_RS13035	PF00035	Double-stranded RNA binding motif
AU28_RS13035	PF14622	Ribonuclease-III-like
AU28_RS13040	PF00717	Peptidase S24-like
AU28_RS13040	PF10502	Signal peptidase, peptidase S26
AU28_RS13045	PF00009	Elongation factor Tu GTP binding domain
AU28_RS13045	PF00679	Elongation factor G C-terminus
AU28_RS13045	PF03144	Elongation factor Tu domain 2
AU28_RS13045	PF06421	GTP-binding protein LepA C-terminus
AU28_RS13050	PF04246	AU28_RS13050
AU28_RS13055	PF03888	MucB/RseB family
AU28_RS13055	PF17188	AU28_RS13055
AU28_RS13060	PF03872	Anti sigma-E protein RseA, N-terminal domain
AU28_RS13060	PF03873	Anti sigma-E protein RseA, C-terminal domain
AU28_RS13065	PF04542	Sigma-70 region 2
AU28_RS13065	PF08281	Sigma-70, region 4
AU28_RS13070	PF00890	FAD binding domain
AU28_RS13070	PF02910	Fumarate reductase flavoprotein C-term
AU28_RS13075	PF05175	Methyltransferase small domain
AU28_RS13080	PF00270	DEAD/DEAH box helicase
AU28_RS13080	PF00271	Helicase conserved C-terminal domain
AU28_RS13085	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS13085	PF03466	LysR substrate binding domain
AU28_RS13090	PF01810	AU28_RS13090
AU28_RS13095	PF01228	Glycine radical
AU28_RS13100	PF03167	Uracil DNA glycosylase superfamily
AU28_RS13105	PF00588	SpoU rRNA Methylase family
AU28_RS13105	PF08032	RNA 2'-O ribose methyltransferase substrate binding
AU28_RS13110	PF00085	Thioredoxin
AU28_RS13115	PF03942	AU28_RS13115
AU28_RS13120	PF00583	Acetyltransferase (GNAT) family
AU28_RS13120	PF13380	CoA binding domain
AU28_RS13120	PF13549	ATP-grasp domain
AU28_RS13120	PF13607	Succinyl-CoA ligase like flavodoxin domain
AU28_RS13125	PF13091	PLD-like domain
AU28_RS13130	PF10043	AU28_RS13130
AU28_RS13135	PF00083	Sugar (and other) transporter
AU28_RS13140	PF14328	AU28_RS13140
AU28_RS13165	PF00004	ATPase family associated with various cellular activities (AAA)
AU28_RS13165	PF02861	Clp amino terminal domain
AU28_RS13165	PF07724	AAA domain (Cdc48 subfamily)
AU28_RS13165	PF10431	C-terminal, D2-small domain, of ClpB protein
AU28_RS13170	PF02578	Multi-copper polyphenol oxidoreductase laccase
AU28_RS13175	PF00849	RNA pseudouridylate synthase
AU28_RS13175	PF01479	S4 domain
AU28_RS13180	PF13525	Outer membrane lipoprotein
AU28_RS13185	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AU28_RS13190	PF00800	Prephenate dehydratase
AU28_RS13190	PF01817	Chorismate mutase type II
AU28_RS13195	PF08450	SMP-30/Gluconolaconase/LRE-like region
AU28_RS13200	PF01817	Chorismate mutase type II
AU28_RS13200	PF02153	Prephenate dehydrogenase
AU28_RS13205	PF00793	DAHP synthetase I family
AU28_RS13210	PF13689	AU28_RS13210
AU28_RS13215	PF00990	GGDEF domain
AU28_RS13215	PF17152	AU28_RS13215
AU28_RS13220	PF01245	Ribosomal protein L19
AU28_RS13225	PF01746	tRNA (Guanine-1)-methyltransferase
AU28_RS13230	PF01782	RimM N-terminal domain
AU28_RS13230	PF05239	PRC-barrel domain
AU28_RS13235	PF00886	Ribosomal protein S16
AU28_RS13240	PF00448	SRP54-type protein, GTPase domain
AU28_RS13240	PF02881	SRP54-type protein, helical bundle domain
AU28_RS13240	PF02978	Signal peptide binding domain
AU28_RS13245	PF01578	AU28_RS13245
AU28_RS13250	PF00571	CBS domain
AU28_RS13250	PF01595	AU28_RS13250
AU28_RS13250	PF03471	Transporter associated domain
AU28_RS13260	PF01025	GrpE
AU28_RS13265	PF01513	ATP-NAD kinase
AU28_RS13270	PF02463	RecF/RecN/SMC N terminal domain
AU28_RS13275	PF04355	SmpA / OmlA family
AU28_RS13280	PF03658	RnfH family Ubiquitin
AU28_RS13285	PF03364	Polyketide cyclase / dehydrase and lipid transport
AU28_RS13290	PF01668	SmpB protein
AU28_RS13295	PF12245	Bacterial Ig-like domain (group 3)
AU28_RS13300	PF02321	Outer membrane efflux protein
AU28_RS13305	PF00005	ABC transporter
AU28_RS13305	PF00664	ABC transporter transmembrane region
AU28_RS13310	PF13437	HlyD family secretion protein
AU28_RS13310	PF13533	Biotin-lipoyl like
AU28_RS13315	PF04606	AU28_RS13315
AU28_RS13320	PF05954	Phage late control gene D protein (GPD)
AU28_RS13325	PF06995	AU28_RS13325
AU28_RS13330	PF10145	AU28_RS13330
AU28_RS13335	PF06528	AU28_RS13335
AU28_RS13340	PF10109	AU28_RS13340
AU28_RS13345	PF04985	AU28_RS13345
AU28_RS13350	PF04984	Phage tail sheath protein
AU28_RS13355	PF02796	Helix-turn-helix domain of resolvase
AU28_RS13365	PF02413	AU28_RS13365
AU28_RS13370	PF07484	Phage Tail Collar Domain
AU28_RS13370	PF12571	AU28_RS13370
AU28_RS13375	PF09684	AU28_RS13375
AU28_RS13380	PF04865	AU28_RS13380
AU28_RS13385	PF04965	Gene 25-like lysozyme
AU28_RS13390	PF04717	Phage-related baseplate assembly protein
AU28_RS13400	PF05069	AU28_RS13400
AU28_RS13405	PF06891	AU28_RS13405
AU28_RS13415	PF00959	Phage lysozyme
AU28_RS13420	PF16080	AU28_RS13420
AU28_RS13425	PF05489	Phage Tail Protein X
AU28_RS13430	PF05926	AU28_RS13430
AU28_RS13435	PF05944	AU28_RS13435
AU28_RS13440	PF05125	AU28_RS13440
AU28_RS13445	PF05929	AU28_RS13445
AU28_RS13450	PF03237	Terminase-like family
AU28_RS13450	PF06056	Putative ATPase subunit of terminase (gpP-like)
AU28_RS13455	PF04860	Phage portal protein
AU28_RS13460	PF10592	AU28_RS13460
AU28_RS13475	PF06183	DinI-like family
AU28_RS13485	PF05840	AU28_RS13485
AU28_RS13490	PF02086	D12 class N6 adenine-specific DNA methyltransferase
AU28_RS13495	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AU28_RS13500	PF10809	AU28_RS13500
AU28_RS13510	PF10893	AU28_RS13510
AU28_RS13515	PF06892	AU28_RS13515
AU28_RS13525	PF07022	Bacteriophage CI repressor helix-turn-helix domain
AU28_RS13525	PF16452	AU28_RS13525
AU28_RS13530	PF00589	Phage integrase family
AU28_RS13545	PF12686	AU28_RS13545
AU28_RS13555	PF13276	AU28_RS13555
AU28_RS13555	PF13683	AU28_RS13555
AU28_RS13560	PF01527	Transposase
AU28_RS13565	PF01797	Transposase IS200 like
AU28_RS13570	PF06722	Protein of unknown function (DUF1205)
AU28_RS13575	PF00005	ABC transporter
AU28_RS13575	PF00664	ABC transporter transmembrane region
AU28_RS13580	PF00756	Putative esterase
AU28_RS13580	PF11806	Domain of unknown function (DUF3327)
AU28_RS13585	PF00756	Putative esterase
AU28_RS13590	PF00593	TonB dependent receptor
AU28_RS13590	PF07715	TonB-dependent Receptor Plug Domain
AU28_RS13600	PF00805	Pentapeptide repeats (8 copies)
AU28_RS13605	PF04393	AU28_RS13605
AU28_RS13610	PF07395	AU28_RS13610
AU28_RS13620	PF03824	AU28_RS13620
AU28_RS13625	PF00672	HAMP domain
AU28_RS13625	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS13625	PF08521	AU28_RS13625
AU28_RS13630	PF00072	Response regulator receiver domain
AU28_RS13630	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS13640	PF03401	Tripartite tricarboxylate transporter family receptor
AU28_RS13645	PF07331	AU28_RS13645
AU28_RS13650	PF01970	AU28_RS13650
AU28_RS13655	PF08943	CsiD
AU28_RS13660	PF01266	FAD dependent oxidoreductase
AU28_RS13665	PF00171	Aldehyde dehydrogenase family
AU28_RS13670	PF00202	Aminotransferase class-III
AU28_RS13675	PF00324	Amino acid permease
AU28_RS13680	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS13680	PF07729	FCD domain
AU28_RS13685	PF01476	LysM domain
AU28_RS13685	PF04972	BON domain
AU28_RS13690	PF01679	AU28_RS13690
AU28_RS13695	PF01022	Bacterial regulatory protein, arsR family
AU28_RS13700	PF00581	Rhodanese-like domain
AU28_RS13700	PF11127	Protein of unknown function (DUF2892)
AU28_RS13710	PF00816	H-NS histone family
AU28_RS13715	PF06610	AU28_RS13715
AU28_RS13720	PF09400	Protein of unknown function (DUF2002)
AU28_RS13725	PF05957	AU28_RS13725
AU28_RS13730	PF00155	Aminotransferase class I and II
AU28_RS13730	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS13735	PF02627	Carboxymuconolactone decarboxylase family
AU28_RS13745	PF00462	Glutaredoxin
AU28_RS13750	PF07972	NrdI Flavodoxin like
AU28_RS13755	PF00317	Ribonucleotide reductase, all-alpha domain
AU28_RS13755	PF02867	Ribonucleotide reductase, barrel domain
AU28_RS13755	PF08343	Ribonucleotide reductase N-terminal
AU28_RS13760	PF00268	Ribonucleotide reductase, small chain
AU28_RS13765	PF00005	ABC transporter
AU28_RS13765	PF00571	CBS domain
AU28_RS13770	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS13775	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AU28_RS13780	PF07690	Major Facilitator Superfamily
AU28_RS13785	PF01047	MarR family
AU28_RS13790	PF00529	HlyD family secretion protein
AU28_RS13790	PF16576	AU28_RS13790
AU28_RS13795	PF07690	Major Facilitator Superfamily
AU28_RS13800	PF11471	AU28_RS13800
AU28_RS13800	PF16966	AU28_RS13800
AU28_RS13805	PF02664	S-Ribosylhomocysteinase (LuxS)
AU28_RS13810	PF04262	Glutamate-cysteine ligase
AU28_RS13815	PF09335	AU28_RS13815
AU28_RS13820	PF13419	Haloacid dehalogenase-like hydrolase
AU28_RS13840	PF02599	Global regulator protein family
AU28_RS13845	PF01411	tRNA synthetases class II (A)
AU28_RS13845	PF02272	DHHA1 domain
AU28_RS13845	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AU28_RS13850	PF02631	RecX family
AU28_RS13855	PF00154	recA bacterial DNA recombination protein
AU28_RS13860	PF02464	Competence-damaged protein
AU28_RS13865	PF13406	Transglycosylase SLT domain
AU28_RS13870	PF03608	AU28_RS13870
AU28_RS13875	PF03612	AU28_RS13875
AU28_RS13875	PF07663	AU28_RS13875
AU28_RS13880	PF03829	PTS system glucitol/sorbitol-specific IIA component
AU28_RS13885	PF00106	short chain dehydrogenase
AU28_RS13890	PF06923	AU28_RS13890
AU28_RS13900	PF00455	AU28_RS13900
AU28_RS13900	PF08220	DeoR-like helix-turn-helix domain
AU28_RS13905	PF00571	CBS domain
AU28_RS13905	PF01380	SIS domain
AU28_RS13910	PF00158	Sigma-54 interaction domain
AU28_RS13910	PF01590	GAF domain
AU28_RS13915	PF00258	Flavodoxin
AU28_RS13915	PF00301	Rubredoxin
AU28_RS13915	PF00753	Metallo-beta-lactamase superfamily
AU28_RS13920	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS13925	PF00708	Acylphosphatase
AU28_RS13925	PF01300	Telomere recombination
AU28_RS13925	PF07503	HypF finger
AU28_RS13930	PF12800	4Fe-4S binding domain
AU28_RS13930	PF13247	4Fe-4S dicluster domain
AU28_RS13940	PF01750	Hydrogenase maturation protease
AU28_RS13945	PF07450	AU28_RS13945
AU28_RS13950	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
AU28_RS13955	PF12838	4Fe-4S dicluster domain
AU28_RS13960	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
AU28_RS13960	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
AU28_RS13960	PF00374	Nickel-dependent hydrogenase
AU28_RS13965	PF00146	NADH dehydrogenase
AU28_RS13970	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AU28_RS13975	PF13247	4Fe-4S dicluster domain
AU28_RS13980	PF11046	AU28_RS13980
AU28_RS13985	PF01155	Hydrogenase expression/synthesis hypA family
AU28_RS13990	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AU28_RS13995	PF01455	HupF/HypC family
AU28_RS14000	PF01924	Hydrogenase formation hypA family
AU28_RS14005	PF00586	AIR synthase related protein, N-terminal domain
AU28_RS14005	PF02769	AIR synthase related protein, C-terminal domain
AU28_RS14010	PF00158	Sigma-54 interaction domain
AU28_RS14010	PF01590	GAF domain
AU28_RS14010	PF02954	Bacterial regulatory protein, Fis family
AU28_RS14015	PF11756	AU28_RS14015
AU28_RS14020	PF01297	Periplasmic solute binding protein family
AU28_RS14025	PF00005	ABC transporter
AU28_RS14030	PF00950	AU28_RS14030
AU28_RS14035	PF00950	AU28_RS14035
AU28_RS14040	PF03421	AU28_RS14040
AU28_RS14050	PF12833	Helix-turn-helix domain
AU28_RS14065	PF09482	AU28_RS14065
AU28_RS14070	PF01514	Secretory protein of YscJ/FliF family
AU28_RS14080	PF09392	Type III secretion needle MxiH like
AU28_RS14085	PF09480	Type III secretion system protein PrgH-EprH (PrgH)
AU28_RS14090	PF12833	Helix-turn-helix domain
AU28_RS14095	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS14100	PF01464	Transglycosylase SLT domain
AU28_RS14105	PF00102	Protein-tyrosine phosphatase
AU28_RS14105	PF03545	Yersinia virulence determinant (YopE)
AU28_RS14105	PF09119	SicP binding
AU28_RS14110	PF05932	Tir chaperone protein (CesT) family
AU28_RS14120	PF00550	Phosphopantetheine attachment site
AU28_RS14125	PF09052	Salmonella invasion protein A
AU28_RS14130	PF06511	Invasion plasmid antigen IpaD
AU28_RS14135	PF09599	AU28_RS14135
AU28_RS14140	PF04888	AU28_RS14140
AU28_RS14140	PF16535	AU28_RS14140
AU28_RS14145	PF07720	Tetratricopeptide repeat
AU28_RS14150	PF01312	FlhB HrpN YscU SpaS Family
AU28_RS14155	PF01311	AU28_RS14155
AU28_RS14160	PF01313	AU28_RS14160
AU28_RS14165	PF00813	AU28_RS14165
AU28_RS14170	PF01052	Surface presentation of antigens (SPOA)
AU28_RS14175	PF02510	AU28_RS14175
AU28_RS14180	PF02090	AU28_RS14180
AU28_RS14185	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AU28_RS14185	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AU28_RS14190	PF03519	Invasion protein B family
AU28_RS14195	PF00771	FHIPEP family
AU28_RS14200	PF07201	HrpJ-like domain
AU28_RS14205	PF00263	AU28_RS14205
AU28_RS14205	PF03958	Bacterial type II/III secretion system short domain
AU28_RS14210	PF12833	Helix-turn-helix domain
AU28_RS14215	PF04741	AU28_RS14215
AU28_RS14220	PF08681	Protein of unknown function (DUF1778)
AU28_RS14225	PF13673	Acetyltransferase (GNAT) domain
AU28_RS14235	PF00149	Calcineurin-like phosphoesterase
AU28_RS14255	PF00488	MutS domain V
AU28_RS14255	PF01624	MutS domain I
AU28_RS14255	PF05188	MutS domain II
AU28_RS14255	PF05190	MutS family domain IV
AU28_RS14255	PF05192	MutS domain III
AU28_RS14260	PF14534	Domain of unknown function (DUF4440)
AU28_RS14265	PF07690	Major Facilitator Superfamily
AU28_RS14270	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS14270	PF03466	LysR substrate binding domain
AU28_RS14275	PF02447	AU28_RS14275
AU28_RS14280	PF01370	NAD dependent epimerase/dehydratase family
AU28_RS14285	PF01261	Xylose isomerase-like TIM barrel
AU28_RS14290	PF00596	Class II Aldolase and Adducin N-terminal domain
AU28_RS14295	PF07005	Protein of unknown function, DUF1537
AU28_RS14295	PF17042	AU28_RS14295
AU28_RS14300	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AU28_RS14300	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AU28_RS14305	PF00455	AU28_RS14305
AU28_RS14305	PF08220	DeoR-like helix-turn-helix domain
AU28_RS14310	PF01047	MarR family
AU28_RS14315	PF02441	Flavoprotein
AU28_RS14320	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
AU28_RS14330	PF00140	Sigma-70 factor, region 1
AU28_RS14330	PF04539	Sigma-70 region 3
AU28_RS14330	PF04542	Sigma-70 region 2
AU28_RS14330	PF04545	Sigma-70, region 4
AU28_RS14335	PF01476	LysM domain
AU28_RS14335	PF01551	Peptidase family M23
AU28_RS14340	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
AU28_RS14345	PF01975	Survival protein SurE
AU28_RS14350	PF01142	tRNA pseudouridine synthase D (TruD)
AU28_RS14355	PF02542	YgbB family
AU28_RS14360	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
AU28_RS14365	PF04977	Septum formation initiator
AU28_RS14370	PF12084	AU28_RS14370
AU28_RS14375	PF01583	Adenylylsulphate kinase
AU28_RS14380	PF00009	Elongation factor Tu GTP binding domain
AU28_RS14385	PF01507	Phosphoadenosine phosphosulfate reductase family
AU28_RS14390	PF04389	Peptidase family M28
AU28_RS14395	PF09707	CRISPR-associated protein (Cas_Cas2CT1978)
AU28_RS14400	PF01867	CRISPR associated protein Cas1
AU28_RS14405	PF08798	CRISPR associated protein
AU28_RS14410	PF09704	CRISPR-associated protein (Cas_Cas5)
AU28_RS14415	PF09344	CT1975-like protein
AU28_RS14420	PF09485	CRISPR-associated protein Cse2 (CRISPR_cse2)
AU28_RS14425	PF09481	CRISPR-associated protein Cse1 (CRISPR_cse1)
AU28_RS14435	PF11047	AU28_RS14435
AU28_RS14440	PF01507	Phosphoadenosine phosphosulfate reductase family
AU28_RS14445	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AU28_RS14445	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AU28_RS14450	PF00175	Oxidoreductase NAD-binding domain
AU28_RS14450	PF00258	Flavodoxin
AU28_RS14450	PF00667	FAD binding domain
AU28_RS14455	PF01242	6-pyruvoyl tetrahydropterin synthase
AU28_RS14460	PF00753	Metallo-beta-lactamase superfamily
AU28_RS14465	PF04055	Radical SAM superfamily
AU28_RS14465	PF13394	4Fe-4S single cluster domain
AU28_RS14470	PF00113	Enolase, C-terminal TIM barrel domain
AU28_RS14470	PF03952	Enolase, N-terminal domain
AU28_RS14475	PF00117	Glutamine amidotransferase class-I
AU28_RS14475	PF06418	CTP synthase N-terminus
AU28_RS14480	PF03819	MazG nucleotide pyrophosphohydrolase domain
AU28_RS14485	PF00419	Fimbrial protein
AU28_RS14490	PF00577	Outer membrane usher protein
AU28_RS14490	PF13953	PapC C-terminal domain
AU28_RS14490	PF13954	PapC N-terminal domain
AU28_RS14495	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS14495	PF02753	Pili assembly chaperone PapD, C-terminal domain
AU28_RS14500	PF00419	Fimbrial protein
AU28_RS14505	PF00419	Fimbrial protein
AU28_RS14510	PF00419	Fimbrial protein
AU28_RS14520	PF02824	TGS domain
AU28_RS14520	PF04607	Region found in RelA / SpoT proteins
AU28_RS14520	PF13291	ACT domain
AU28_RS14520	PF13328	HD domain
AU28_RS14525	PF01938	TRAM domain
AU28_RS14525	PF05958	tRNA (Uracil-5-)-methyltransferase
AU28_RS14530	PF00072	Response regulator receiver domain
AU28_RS14530	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS14530	PF00672	HAMP domain
AU28_RS14530	PF01627	Hpt domain
AU28_RS14530	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS14530	PF09984	AU28_RS14530
AU28_RS14535	PF02595	Glycerate kinase family
AU28_RS14540	PF13378	Enolase C-terminal domain-like
AU28_RS14545	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AU28_RS14545	PF13378	Enolase C-terminal domain-like
AU28_RS14550	PF07690	Major Facilitator Superfamily
AU28_RS14555	PF00258	Flavodoxin
AU28_RS14560	PF00849	RNA pseudouridylate synthase
AU28_RS14565	PF04287	tRNA pseudouridine synthase C
AU28_RS14570	PF07348	Syd protein (SUKH-2)
AU28_RS14575	PF14489	QueF-like protein
AU28_RS14575	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
AU28_RS14580	PF03641	Possible lysine decarboxylase
AU28_RS14580	PF11892	Domain of unknown function (DUF3412)
AU28_RS14580	PF14793	Domain of unknown function (DUF4478)
AU28_RS14590	PF03313	AU28_RS14590
AU28_RS14590	PF03315	Serine dehydratase beta chain
AU28_RS14595	PF01367	5'-3' exonuclease, C-terminal SAM fold
AU28_RS14595	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AU28_RS14600	PF00465	Iron-containing alcohol dehydrogenase
AU28_RS14605	PF00596	Class II Aldolase and Adducin N-terminal domain
AU28_RS14610	PF07690	Major Facilitator Superfamily
AU28_RS14615	PF02952	L-fucose isomerase, C-terminal domain
AU28_RS14615	PF07881	L-fucose isomerase, first N-terminal domain
AU28_RS14615	PF07882	L-fucose isomerase, second N-terminal domain
AU28_RS14620	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AU28_RS14620	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AU28_RS14625	PF05025	RbsD / FucU transport protein family
AU28_RS14630	PF00455	AU28_RS14630
AU28_RS14630	PF08220	DeoR-like helix-turn-helix domain
AU28_RS14635	PF01728	FtsJ-like methyltransferase
AU28_RS14640	PF04241	AU28_RS14640
AU28_RS14645	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS14645	PF03466	LysR substrate binding domain
AU28_RS14650	PF06004	Bacterial protein of unknown function (DUF903)
AU28_RS14655	PF00266	Aminotransferase class-V
AU28_RS14660	PF02657	Fe-S metabolism associated domain
AU28_RS14665	PF00892	EamA-like transporter family
AU28_RS14670	PF00899	ThiF family
AU28_RS14675	PF03562	MltA specific insert domain
AU28_RS14675	PF06725	3D domain
AU28_RS14690	PF01520	N-acetylmuramoyl-L-alanine amidase
AU28_RS14690	PF11741	AMIN domain
AU28_RS14695	PF00583	Acetyltransferase (GNAT) family
AU28_RS14695	PF00696	Amino acid kinase family
AU28_RS14700	PF13538	UvrD-like helicase C-terminal domain
AU28_RS14700	PF13604	AAA domain
AU28_RS14705	PF00580	UvrD/REP helicase N-terminal domain
AU28_RS14705	PF13361	UvrD-like helicase C-terminal domain
AU28_RS14710	PF00675	Insulinase (Peptidase family M16)
AU28_RS14710	PF05193	Peptidase M16 inactive domain
AU28_RS14710	PF16187	AU28_RS14710
AU28_RS14715	PF04257	Exodeoxyribonuclease V, gamma subunit
AU28_RS14720	PF12528	AU28_RS14720
AU28_RS14720	PF13544	AU28_RS14720
AU28_RS14725	PF10713	AU28_RS14725
AU28_RS14730	PF13633	Prokaryotic N-terminal methylation site
AU28_RS14735	PF13544	AU28_RS14735
AU28_RS14745	PF00303	Thymidylate synthase
AU28_RS14750	PF01790	AU28_RS14750
AU28_RS14755	PF00391	PEP-utilising enzyme, mobile domain
AU28_RS14755	PF01590	GAF domain
AU28_RS14755	PF02896	PEP-utilising enzyme, TIM barrel domain
AU28_RS14755	PF05524	PEP-utilising enzyme, N-terminal
AU28_RS14760	PF00293	NUDIX domain
AU28_RS14770	PF02976	DNA mismatch repair enzyme MutH
AU28_RS14775	PF03741	AU28_RS14775
AU28_RS14780	PF06004	Bacterial protein of unknown function (DUF903)
AU28_RS14785	PF00248	Aldo/keto reductase family
AU28_RS14790	PF07690	Major Facilitator Superfamily
AU28_RS14795	PF00501	AMP-binding enzyme
AU28_RS14795	PF01553	Acyltransferase
AU28_RS14800	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS14800	PF13377	Periplasmic binding protein-like domain
AU28_RS14805	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS14805	PF13377	Periplasmic binding protein-like domain
AU28_RS14810	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AU28_RS14810	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AU28_RS14815	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS14815	PF03466	LysR substrate binding domain
AU28_RS14820	PF01177	Asp/Glu/Hydantoin racemase
AU28_RS14825	PF00083	Sugar (and other) transporter
AU28_RS14830	PF00106	short chain dehydrogenase
AU28_RS14835	PF04962	KduI/IolB family
AU28_RS14840	PF00108	Thiolase, N-terminal domain
AU28_RS14840	PF02803	Thiolase, C-terminal domain
AU28_RS14845	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS14845	PF03466	LysR substrate binding domain
AU28_RS14850	PF05232	AU28_RS14850
AU28_RS14855	PF03222	Tryptophan/tyrosine permease family
AU28_RS14860	PF02583	Metal-sensitive transcriptional repressor
AU28_RS14865	PF03824	AU28_RS14865
AU28_RS14875	PF07180	Protein of unknown function (DUF1401)
AU28_RS14880	PF00419	Fimbrial protein
AU28_RS14885	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS14885	PF02753	Pili assembly chaperone PapD, C-terminal domain
AU28_RS14890	PF00577	Outer membrane usher protein
AU28_RS14890	PF13953	PapC C-terminal domain
AU28_RS14890	PF13954	PapC N-terminal domain
AU28_RS14895	PF00419	Fimbrial protein
AU28_RS14900	PF10938	YfdX protein
AU28_RS14905	PF13505	Outer membrane protein beta-barrel domain
AU28_RS14910	PF01850	PIN domain
AU28_RS14925	PF07313	Protein of unknown function (DUF1460)
AU28_RS14935	PF01476	LysM domain
AU28_RS14935	PF01551	Peptidase family M23
AU28_RS14940	PF00293	NUDIX domain
AU28_RS14945	PF00152	tRNA synthetases class II (D, K and N)
AU28_RS14945	PF01336	OB-fold nucleic acid binding domain
AU28_RS14950	PF00472	RF-1 domain
AU28_RS14950	PF03462	PCRF domain
AU28_RS14955	PF01368	DHH family
AU28_RS14955	PF02272	DHHA1 domain
AU28_RS14960	PF10411	Disulfide bond isomerase protein N-terminus
AU28_RS14960	PF13098	Thioredoxin-like domain
AU28_RS14965	PF00589	Phage integrase family
AU28_RS14965	PF02899	Phage integrase, N-terminal SAM-like domain
AU28_RS14970	PF00258	Flavodoxin
AU28_RS14975	PF07254	AU28_RS14975
AU28_RS14980	PF03937	Flavinator of succinate dehydrogenase
AU28_RS14990	PF01571	Aminomethyltransferase folate-binding domain
AU28_RS14995	PF03006	AU28_RS14995
AU28_RS15000	PF04266	ASCH domain
AU28_RS15005	PF00232	Glycosyl hydrolase family 1
AU28_RS15010	PF13557	AU28_RS15010
AU28_RS15015	PF02347	Glycine cleavage system P-protein
AU28_RS15020	PF01597	Glycine cleavage H-protein
AU28_RS15025	PF01571	Aminomethyltransferase folate-binding domain
AU28_RS15025	PF08669	Glycine cleavage T-protein C-terminal barrel domain
AU28_RS15030	PF01494	FAD binding domain
AU28_RS15035	PF01494	FAD binding domain
AU28_RS15040	PF00557	Metallopeptidase family M24
AU28_RS15040	PF05195	Aminopeptidase P, N-terminal domain
AU28_RS15045	PF03695	Uncharacterised protein family (UPF0149)
AU28_RS15050	PF05164	Cell division protein ZapA
AU28_RS15055	PF01812	5-formyltetrahydrofolate cyclo-ligase family
AU28_RS15060	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AU28_RS15060	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AU28_RS15065	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
AU28_RS15070	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS15070	PF03466	LysR substrate binding domain
AU28_RS15075	PF04402	Protein of unknown function (DUF541)
AU28_RS15080	PF01810	AU28_RS15080
AU28_RS15085	PF00924	Mechanosensitive ion channel
AU28_RS15085	PF05552	Conserved TM helix
AU28_RS15090	PF01116	Fructose-bisphosphate aldolase class-II
AU28_RS15095	PF00162	Phosphoglycerate kinase
AU28_RS15100	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AU28_RS15100	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AU28_RS15105	PF03479	Domain of unknown function (DUF296)
AU28_RS15110	PF12822	Protein of unknown function (DUF3816)
AU28_RS15115	PF02361	Cobalt transport protein
AU28_RS15120	PF00005	ABC transporter
AU28_RS15125	PF00005	ABC transporter
AU28_RS15130	PF00456	Transketolase, thiamine diphosphate binding domain
AU28_RS15130	PF02779	Transketolase, pyrimidine binding domain
AU28_RS15130	PF02780	Transketolase, C-terminal domain
AU28_RS15135	PF01435	Peptidase family M48
AU28_RS15140	PF00491	Arginase family
AU28_RS15145	PF12146	Putative lysophospholipase
AU28_RS15150	PF04074	Domain of unknown function (DUF386)
AU28_RS15155	PF02615	Malate/L-lactate dehydrogenase
AU28_RS15160	PF00107	Zinc-binding dehydrogenase
AU28_RS15160	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS15165	PF01232	Mannitol dehydrogenase Rossmann domain
AU28_RS15165	PF08125	Mannitol dehydrogenase C-terminal domain
AU28_RS15170	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AU28_RS15175	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS15175	PF07729	FCD domain
AU28_RS15185	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AU28_RS15185	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AU28_RS15190	PF11036	AU28_RS15190
AU28_RS15195	PF10885	AU28_RS15195
AU28_RS15200	PF00438	S-adenosylmethionine synthetase, N-terminal domain
AU28_RS15200	PF02772	S-adenosylmethionine synthetase, central domain
AU28_RS15200	PF02773	S-adenosylmethionine synthetase, C-terminal domain
AU28_RS15205	PF00083	Sugar (and other) transporter
AU28_RS15210	PF10263	AU28_RS15210
AU28_RS15215	PF04231	Endonuclease I
AU28_RS15220	PF04452	RNA methyltransferase
AU28_RS15225	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
AU28_RS15225	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
AU28_RS15230	PF02622	Uncharacterized ACR, COG1678
AU28_RS15235	PF03652	Uncharacterised protein family (UPF0081)
AU28_RS15245	PF00437	Type II/IV secretion system protein
AU28_RS15250	PF01168	Alanine racemase, N-terminal domain
AU28_RS15255	PF02325	AU28_RS15255
AU28_RS15260	PF02594	Uncharacterised ACR, YggU family COG1872
AU28_RS15265	PF01725	Ham1 family
AU28_RS15270	PF04055	Radical SAM superfamily
AU28_RS15270	PF06969	HemN C-terminal domain
AU28_RS15275	PF06717	AU28_RS15275
AU28_RS15280	PF00710	Asparaginase
AU28_RS15285	PF11101	AU28_RS15285
AU28_RS15290	PF04320	AU28_RS15290
AU28_RS15295	PF02390	Putative methyltransferase
AU28_RS15300	PF00633	Helix-hairpin-helix motif
AU28_RS15300	PF00730	HhH-GPD superfamily base excision DNA repair protein
AU28_RS15300	PF14815	NUDIX domain
AU28_RS15305	PF04362	Bacterial Fe(2+) trafficking
AU28_RS15310	PF01464	Transglycosylase SLT domain
AU28_RS15310	PF11873	Domain of unknown function (DUF3393)
AU28_RS15320	PF01276	Orn/Lys/Arg decarboxylase, major domain
AU28_RS15320	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AU28_RS15320	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AU28_RS15330	PF04474	AU28_RS15330
AU28_RS15340	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AU28_RS15345	PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain
AU28_RS15345	PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain
AU28_RS15350	PF01575	MaoC like domain
AU28_RS15355	PF03328	HpcH/HpaI aldolase/citrate lyase family
AU28_RS15360	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS15360	PF03466	LysR substrate binding domain
AU28_RS15365	PF00884	Sulfatase
AU28_RS15370	PF04055	Radical SAM superfamily
AU28_RS15375	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS15380	PF11354	AU28_RS15380
AU28_RS15385	PF13520	Amino acid permease
AU28_RS15390	PF05899	Protein of unknown function (DUF861)
AU28_RS15395	PF01266	FAD dependent oxidoreductase
AU28_RS15400	PF00171	Aldehyde dehydrogenase family
AU28_RS15405	PF04965	Gene 25-like lysozyme
AU28_RS15410	PF05638	Protein of unknown function (DUF796)
AU28_RS15415	PF01522	Polysaccharide deacetylase
AU28_RS15420	PF00795	Carbon-nitrogen hydrolase
AU28_RS15425	PF07690	Major Facilitator Superfamily
AU28_RS15430	PF03786	D-mannonate dehydratase (UxuA)
AU28_RS15435	PF01232	Mannitol dehydrogenase Rossmann domain
AU28_RS15435	PF08125	Mannitol dehydrogenase C-terminal domain
AU28_RS15440	PF02614	Glucuronate isomerase
AU28_RS15445	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AU28_RS15445	PF13682	Chemoreceptor zinc-binding domain
AU28_RS15450	PF03738	Glutathionylspermidine synthase preATP-grasp
AU28_RS15450	PF05257	CHAP domain
AU28_RS15455	PF02798	Glutathione S-transferase, N-terminal domain
AU28_RS15455	PF13410	Glutathione S-transferase, C-terminal domain
AU28_RS15460	PF13531	Bacterial extracellular solute-binding protein
AU28_RS15465	PF01497	Periplasmic binding protein
AU28_RS15470	PF01455	HupF/HypC family
AU28_RS15475	PF01155	Hydrogenase expression/synthesis hypA family
AU28_RS15480	PF11939	Protein of unknown function (DUF3457)
AU28_RS15485	PF01750	Hydrogenase maturation protease
AU28_RS15490	PF00374	Nickel-dependent hydrogenase
AU28_RS15495	PF03916	AU28_RS15495
AU28_RS15500	PF13247	4Fe-4S dicluster domain
AU28_RS15505	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
AU28_RS15505	PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal
AU28_RS15510	PF11115	AU28_RS15510
AU28_RS15515	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AU28_RS15515	PF00672	HAMP domain
AU28_RS15520	PF03350	AU28_RS15520
AU28_RS15540	PF13561	Enoyl-(Acyl carrier protein) reductase
AU28_RS15545	PF02472	Biopolymer transport protein ExbD/TolR
AU28_RS15550	PF01618	AU28_RS15550
AU28_RS15560	PF01053	Cys/Met metabolism PLP-dependent enzyme
AU28_RS15565	PF09335	AU28_RS15565
AU28_RS15570	PF06719	AU28_RS15570
AU28_RS15570	PF12833	Helix-turn-helix domain
AU28_RS15575	PF00465	Iron-containing alcohol dehydrogenase
AU28_RS15580	PF00248	Aldo/keto reductase family
AU28_RS15585	PF00939	Sodium:sulfate symporter transmembrane region
AU28_RS15590	PF01230	HIT domain
AU28_RS15600	PF04055	Radical SAM superfamily
AU28_RS15600	PF08497	AU28_RS15600
AU28_RS15600	PF11842	AU28_RS15600
AU28_RS15605	PF03480	Bacterial extracellular solute-binding protein, family 7
AU28_RS15610	PF04290	AU28_RS15610
AU28_RS15615	PF06808	AU28_RS15615
AU28_RS15620	PF00394	Multicopper oxidase
AU28_RS15620	PF07731	Multicopper oxidase
AU28_RS15620	PF07732	Multicopper oxidase
AU28_RS15625	PF01553	Acyltransferase
AU28_RS15630	PF00521	DNA gyrase/topoisomerase IV, subunit A
AU28_RS15630	PF03989	DNA gyrase C-terminal domain, beta-propeller
AU28_RS15635	PF06445	GyrI-like small molecule binding domain
AU28_RS15635	PF12833	Helix-turn-helix domain
AU28_RS15640	PF04076	Bacterial OB fold (BOF) protein
AU28_RS15645	PF00072	Response regulator receiver domain
AU28_RS15645	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS15650	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS15650	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS15650	PF08521	AU28_RS15650
AU28_RS15655	PF02525	Flavodoxin-like fold
AU28_RS15660	PF03992	Antibiotic biosynthesis monooxygenase
AU28_RS15665	PF00204	DNA gyrase B
AU28_RS15665	PF00986	DNA gyrase B subunit, carboxyl terminus
AU28_RS15665	PF01751	Toprim domain
AU28_RS15665	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS15670	PF05728	Uncharacterised protein family (UPF0227)
AU28_RS15675	PF00149	Calcineurin-like phosphoesterase
AU28_RS15680	PF06853	AU28_RS15680
AU28_RS15685	PF00293	NUDIX domain
AU28_RS15690	PF02321	Outer membrane efflux protein
AU28_RS15695	PF06693	AU28_RS15695
AU28_RS15700	PF03738	Glutathionylspermidine synthase preATP-grasp
AU28_RS15705	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
AU28_RS15710	PF02535	AU28_RS15710
AU28_RS15715	PF13260	AU28_RS15715
AU28_RS15720	PF05935	Arylsulfotransferase (ASST)
AU28_RS15725	PF01323	DSBA-like thioredoxin domain
AU28_RS15730	PF02600	Disulfide bond formation protein DsbB
AU28_RS15735	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AU28_RS15740	PF04380	AU28_RS15740
AU28_RS15745	PF08971	Glycogen synthesis protein
AU28_RS15750	PF07290	AU28_RS15750
AU28_RS15755	PF01145	SPFH domain / Band 7 family
AU28_RS15755	PF15975	AU28_RS15755
AU28_RS15760	PF00294	pfkB family carbohydrate kinase
AU28_RS15760	PF01467	Cytidylyltransferase
AU28_RS15765	PF03710	Glutamate-ammonia ligase adenylyltransferase
AU28_RS15765	PF08335	GlnD PII-uridylyltransferase
AU28_RS15770	PF01928	CYTH domain
AU28_RS15775	PF08239	Bacterial SH3 domain
AU28_RS15780	PF01743	Poly A polymerase head domain
AU28_RS15780	PF01966	HD domain
AU28_RS15780	PF12627	Probable RNA and SrmB- binding site of polymerase A
AU28_RS15785	PF02673	AU28_RS15785
AU28_RS15790	PF02152	Dihydroneopterin aldolase
AU28_RS15795	PF02660	AU28_RS15795
AU28_RS15805	PF00814	Glycoprotease family
AU28_RS15810	PF01165	Ribosomal protein S21
AU28_RS15815	PF01807	CHC2 zinc finger
AU28_RS15815	PF08275	DNA primase catalytic core, N-terminal domain
AU28_RS15815	PF08278	DNA primase DnaG DnaB-binding
AU28_RS15815	PF10410	DnaB-helicase binding domain of primase
AU28_RS15815	PF13155	Toprim-like
AU28_RS15820	PF00140	Sigma-70 factor, region 1
AU28_RS15820	PF03979	Sigma-70 factor, region 1
AU28_RS15820	PF04539	Sigma-70 region 3
AU28_RS15820	PF04542	Sigma-70 region 2
AU28_RS15820	PF04545	Sigma-70, region 4
AU28_RS15820	PF04546	Sigma-70, non-essential region
AU28_RS15825	PF03167	Uracil DNA glycosylase superfamily
AU28_RS15835	PF04954	Siderophore-interacting protein
AU28_RS15835	PF08021	Siderophore-interacting FAD-binding domain
AU28_RS15840	PF03551	Transcriptional regulator PadR-like family
AU28_RS15845	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AU28_RS15845	PF00672	HAMP domain
AU28_RS15845	PF12729	AU28_RS15845
AU28_RS15850	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AU28_RS15850	PF00672	HAMP domain
AU28_RS15850	PF08447	PAS fold
AU28_RS15855	PF00202	Aminotransferase class-III
AU28_RS15860	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AU28_RS15860	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS15865	PF05175	Methyltransferase small domain
AU28_RS15870	PF01863	Protein of unknown function DUF45
AU28_RS15875	PF02698	DUF218 domain
AU28_RS15880	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AU28_RS15885	PF03741	AU28_RS15885
AU28_RS15890	PF00375	Sodium:dicarboxylate symporter family
AU28_RS15895	PF09335	AU28_RS15895
AU28_RS15900	PF13721	SecD export protein N-terminal TM region
AU28_RS15905	PF06476	AU28_RS15905
AU28_RS15910	PF05957	AU28_RS15910
AU28_RS15915	PF07332	AU28_RS15915
AU28_RS15920	PF13997	AU28_RS15920
AU28_RS15925	PF07681	AU28_RS15925
AU28_RS15930	PF13409	Glutathione S-transferase, N-terminal domain
AU28_RS15930	PF13410	Glutathione S-transferase, C-terminal domain
AU28_RS15935	PF05656	AU28_RS15935
AU28_RS15940	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS15940	PF03466	LysR substrate binding domain
AU28_RS15945	PF02678	Pirin
AU28_RS15955	PF03313	AU28_RS15955
AU28_RS15965	PF03313	AU28_RS15965
AU28_RS15965	PF03315	Serine dehydratase beta chain
AU28_RS15970	PF01228	Glycine radical
AU28_RS15970	PF02901	Pyruvate formate lyase
AU28_RS15975	PF00871	Acetokinase family
AU28_RS15980	PF03222	Tryptophan/tyrosine permease family
AU28_RS15985	PF00291	Pyridoxal-phosphate dependent enzyme
AU28_RS15990	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS15990	PF03466	LysR substrate binding domain
AU28_RS15995	PF02595	Glycerate kinase family
AU28_RS16000	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AU28_RS16000	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AU28_RS16005	PF03328	HpcH/HpaI aldolase/citrate lyase family
AU28_RS16010	PF04295	AU28_RS16010
AU28_RS16010	PF08666	SAF domain
AU28_RS16015	PF01116	Fructose-bisphosphate aldolase class-II
AU28_RS16020	PF08013	Tagatose 6 phosphate kinase
AU28_RS16025	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AU28_RS16030	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AU28_RS16035	PF03611	AU28_RS16035
AU28_RS16040	PF00107	Zinc-binding dehydrogenase
AU28_RS16040	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS16045	PF00455	AU28_RS16045
AU28_RS16045	PF08220	DeoR-like helix-turn-helix domain
AU28_RS16050	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AU28_RS16055	PF04348	LppC putative lipoprotein
AU28_RS16060	PF02021	Uncharacterised protein family UPF0102
AU28_RS16065	PF13580	SIS domain
AU28_RS16070	PF04972	BON domain
AU28_RS16075	PF13460	NADH(P)-binding
AU28_RS16080	PF01965	DJ-1/PfpI family
AU28_RS16090	PF01541	GIY-YIG catalytic domain
AU28_RS16095	PF13508	Acetyltransferase (GNAT) domain
AU28_RS16100	PF02036	SCP-2 sterol transfer family
AU28_RS16105	PF01136	AU28_RS16105
AU28_RS16110	PF01136	AU28_RS16110
AU28_RS16115	PF00296	Luciferase-like monooxygenase
AU28_RS16130	PF03222	Tryptophan/tyrosine permease family
AU28_RS16135	PF00270	DEAD/DEAH box helicase
AU28_RS16135	PF00271	Helicase conserved C-terminal domain
AU28_RS16135	PF03880	DbpA RNA binding domain
AU28_RS16135	PF12343	AU28_RS16135
AU28_RS16140	PF07719	Tetratricopeptide repeat
AU28_RS16140	PF13181	Tetratricopeptide repeat
AU28_RS16145	PF00013	KH domain
AU28_RS16145	PF00575	S1 RNA binding domain
AU28_RS16145	PF01138	3' exoribonuclease family, domain 1
AU28_RS16145	PF03725	3' exoribonuclease family, domain 2
AU28_RS16145	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
AU28_RS16150	PF00312	Ribosomal protein S15
AU28_RS16155	PF01509	TruB family pseudouridylate synthase (N terminal domain)
AU28_RS16155	PF09157	Pseudouridine synthase II TruB, C-terminal
AU28_RS16155	PF16198	AU28_RS16155
AU28_RS16160	PF02033	Ribosome-binding factor A
AU28_RS16165	PF00009	Elongation factor Tu GTP binding domain
AU28_RS16165	PF04760	Translation initiation factor IF-2, N-terminal region
AU28_RS16165	PF08364	AU28_RS16165
AU28_RS16165	PF11987	Translation-initiation factor 2
AU28_RS16170	PF08529	NusA N-terminal domain
AU28_RS16170	PF13184	NusA-like KH domain
AU28_RS16170	PF14520	Helix-hairpin-helix domain
AU28_RS16175	PF02576	Uncharacterised BCR, YhbC family COG0779
AU28_RS16185	PF00764	Arginosuccinate synthase
AU28_RS16200	PF03840	Preprotein translocase SecG subunit
AU28_RS16205	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AU28_RS16205	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AU28_RS16205	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AU28_RS16205	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AU28_RS16210	PF00809	Pterin binding enzyme
AU28_RS16215	PF00004	ATPase family associated with various cellular activities (AAA)
AU28_RS16215	PF01434	Peptidase family M41
AU28_RS16215	PF06480	FtsH Extracellular
AU28_RS16220	PF01728	FtsJ-like methyltransferase
AU28_RS16225	PF01985	CRS1 / YhbY (CRM) domain
AU28_RS16230	PF01272	Transcription elongation factor, GreA/GreB, C-term
AU28_RS16230	PF03449	Transcription elongation factor, N-terminal
AU28_RS16240	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
AU28_RS16245	PF01018	GTP1/OBG
AU28_RS16245	PF01926	50S ribosome-binding GTPase
AU28_RS16250	PF00892	EamA-like transporter family
AU28_RS16255	PF01016	Ribosomal L27 protein
AU28_RS16260	PF00829	Ribosomal prokaryotic L21 protein
AU28_RS16265	PF00348	Polyprenyl synthetase
AU28_RS16270	PF13693	Winged helix-turn-helix DNA-binding
AU28_RS16275	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AU28_RS16280	PF01722	BolA-like protein
AU28_RS16285	PF13466	STAS domain
AU28_RS16290	PF05494	Toluene tolerance, Ttg2
AU28_RS16295	PF02470	AU28_RS16295
AU28_RS16300	PF02405	AU28_RS16300
AU28_RS16305	PF00005	ABC transporter
AU28_RS16310	PF01699	Sodium/calcium exchanger protein
AU28_RS16315	PF00571	CBS domain
AU28_RS16315	PF01380	SIS domain
AU28_RS16320	PF08282	haloacid dehalogenase-like hydrolase
AU28_RS16325	PF06835	Lipopolysaccharide-assembly, LptC-related
AU28_RS16330	PF03968	OstA-like protein
AU28_RS16335	PF00005	ABC transporter
AU28_RS16335	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AU28_RS16340	PF00309	AU28_RS16340
AU28_RS16340	PF04552	Sigma-54, DNA binding domain
AU28_RS16340	PF04963	Sigma-54 factor, core binding domain
AU28_RS16345	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AU28_RS16350	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AU28_RS16355	PF03668	AU28_RS16355
AU28_RS16360	PF00381	PTS HPr component phosphorylation site
AU28_RS16365	PF10707	AU28_RS16365
AU28_RS16370	PF00912	Transglycosylase
AU28_RS16375	PF01965	DJ-1/PfpI family
AU28_RS16380	PF00072	Response regulator receiver domain
AU28_RS16380	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS16380	PF00989	PAS fold
AU28_RS16380	PF01627	Hpt domain
AU28_RS16380	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS16385	PF04055	Radical SAM superfamily
AU28_RS16385	PF16199	AU28_RS16385
AU28_RS16395	PF00310	Glutamine amidotransferases class-II
AU28_RS16395	PF01493	GXGXG motif
AU28_RS16395	PF01645	Conserved region in glutamate synthase
AU28_RS16395	PF04898	Glutamate synthase central domain
AU28_RS16400	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS16400	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AU28_RS16405	PF06250	AU28_RS16405
AU28_RS16410	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
AU28_RS16415	PF07969	Amidohydrolase family
AU28_RS16420	PF04074	Domain of unknown function (DUF386)
AU28_RS16425	PF00480	ROK family
AU28_RS16430	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
AU28_RS16435	PF07690	Major Facilitator Superfamily
AU28_RS16440	PF00701	Dihydrodipicolinate synthetase family
AU28_RS16445	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS16445	PF07729	FCD domain
AU28_RS16450	PF04386	Stringent starvation protein B
AU28_RS16455	PF00043	Glutathione S-transferase, C-terminal domain
AU28_RS16455	PF02798	Glutathione S-transferase, N-terminal domain
AU28_RS16460	PF05117	AU28_RS16460
AU28_RS16460	PF06877	Regulator of ribonuclease activity B
AU28_RS16465	PF00380	Ribosomal protein S9/S16
AU28_RS16470	PF00572	Ribosomal protein L13
AU28_RS16475	PF03969	AFG1-like ATPase
AU28_RS16480	PF06295	AU28_RS16480
AU28_RS16485	PF00595	PDZ domain (Also known as DHR or GLGF)
AU28_RS16485	PF13180	PDZ domain
AU28_RS16485	PF13365	Trypsin-like peptidase domain
AU28_RS16490	PF13180	PDZ domain
AU28_RS16490	PF13365	Trypsin-like peptidase domain
AU28_RS16495	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
AU28_RS16500	PF03977	AU28_RS16500
AU28_RS16505	PF00364	Biotin-requiring enzyme
AU28_RS16505	PF00682	HMGL-like
AU28_RS16505	PF02436	Conserved carboxylase domain
AU28_RS16510	PF04277	AU28_RS16510
AU28_RS16515	PF05683	Fumarase C-terminus
AU28_RS16520	PF05681	AU28_RS16520
AU28_RS16525	PF03600	Citrate transporter
AU28_RS16530	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS16530	PF07729	FCD domain
AU28_RS16535	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS16540	PF00056	lactate/malate dehydrogenase, NAD binding domain
AU28_RS16540	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
AU28_RS16545	PF01316	Arginine repressor, DNA binding domain
AU28_RS16545	PF02863	Arginine repressor, C-terminal domain
AU28_RS16550	PF07338	Protein of unknown function (DUF1471)
AU28_RS16555	PF07338	Protein of unknown function (DUF1471)
AU28_RS16565	PF04632	AU28_RS16565
AU28_RS16570	PF13437	HlyD family secretion protein
AU28_RS16570	PF13533	Biotin-lipoyl like
AU28_RS16575	PF07869	AU28_RS16575
AU28_RS16580	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS16580	PF03466	LysR substrate binding domain
AU28_RS16585	PF01523	Putative modulator of DNA gyrase
AU28_RS16590	PF13116	AU28_RS16590
AU28_RS16590	PF13502	AU28_RS16590
AU28_RS16595	PF00575	S1 RNA binding domain
AU28_RS16595	PF10150	Ribonuclease E/G family
AU28_RS16600	PF02545	Maf-like protein
AU28_RS16605	PF04093	AU28_RS16605
AU28_RS16610	PF04085	rod shape-determining protein MreC
AU28_RS16615	PF06723	MreB/Mbl protein
AU28_RS16625	PF00563	EAL domain
AU28_RS16625	PF00990	GGDEF domain
AU28_RS16625	PF17157	AU28_RS16625
AU28_RS16630	PF00107	Zinc-binding dehydrogenase
AU28_RS16630	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS16635	PF00174	Oxidoreductase molybdopterin binding domain
AU28_RS16640	PF01794	AU28_RS16640
AU28_RS16645	PF00364	Biotin-requiring enzyme
AU28_RS16650	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
AU28_RS16650	PF02785	Biotin carboxylase C-terminal domain
AU28_RS16650	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AU28_RS16655	PF06196	AU28_RS16655
AU28_RS16660	PF00474	Sodium:solute symporter family
AU28_RS16665	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
AU28_RS16670	PF01207	Dihydrouridine synthase (Dus)
AU28_RS16675	PF02954	Bacterial regulatory protein, Fis family
AU28_RS16680	PF01555	DNA methylase
AU28_RS16685	PF10831	AU28_RS16685
AU28_RS16690	PF00563	EAL domain
AU28_RS16690	PF00990	GGDEF domain
AU28_RS16690	PF03707	AU28_RS16690
AU28_RS16695	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS16695	PF08361	MAATS-type transcriptional repressor, C-terminal region
AU28_RS16700	PF00529	HlyD family secretion protein
AU28_RS16700	PF16576	AU28_RS16700
AU28_RS16705	PF00873	AcrB/AcrD/AcrF family
AU28_RS16745	PF00132	Bacterial transferase hexapeptide (six repeats)
AU28_RS16750	PF07369	Protein of unknown function (DUF1488)
AU28_RS16755	PF01488	Shikimate / quinate 5-dehydrogenase
AU28_RS16755	PF08501	Shikimate dehydrogenase substrate binding domain
AU28_RS16760	PF01300	Telomere recombination
AU28_RS16765	PF01396	AU28_RS16765
AU28_RS16770	PF04361	AU28_RS16770
AU28_RS16775	PF02481	DNA recombination-mediator protein A
AU28_RS16780	PF01327	Polypeptide deformylase
AU28_RS16785	PF00551	Formyl transferase
AU28_RS16785	PF02911	Formyl transferase, C-terminal domain
AU28_RS16790	PF01029	NusB family
AU28_RS16790	PF01189	NOL1/NOP2/sun family
AU28_RS16795	PF02080	TrkA-C domain
AU28_RS16795	PF02254	TrkA-N domain
AU28_RS16800	PF01741	Large-conductance mechanosensitive channel, MscL
AU28_RS16805	PF03889	AU28_RS16805
AU28_RS16810	PF13411	MerR HTH family regulatory protein
AU28_RS16815	PF09350	AU28_RS16815
AU28_RS16820	PF01196	Ribosomal protein L17
AU28_RS16825	PF01000	RNA polymerase Rpb3/RpoA insert domain
AU28_RS16825	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
AU28_RS16825	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
AU28_RS16830	PF00163	Ribosomal protein S4/S9 N-terminal domain
AU28_RS16830	PF01479	S4 domain
AU28_RS16835	PF00411	Ribosomal protein S11
AU28_RS16840	PF00416	Ribosomal protein S13/S18
AU28_RS16845	PF00444	Ribosomal protein L36
AU28_RS16850	PF00344	SecY translocase
AU28_RS16855	PF00828	Ribosomal protein L18e/L15
AU28_RS16860	PF00327	Ribosomal protein L30p/L7e
AU28_RS16865	PF00333	Ribosomal protein S5, N-terminal domain
AU28_RS16865	PF03719	Ribosomal protein S5, C-terminal domain
AU28_RS16870	PF00861	Ribosomal L18p/L5e family
AU28_RS16875	PF00347	Ribosomal protein L6
AU28_RS16880	PF00410	Ribosomal protein S8
AU28_RS16885	PF00253	Ribosomal protein S14p/S29e
AU28_RS16890	PF00281	Ribosomal protein L5
AU28_RS16890	PF00673	ribosomal L5P family C-terminus
AU28_RS16895	PF00467	KOW motif
AU28_RS16895	PF17136	AU28_RS16895
AU28_RS16900	PF00238	Ribosomal protein L14p/L23e
AU28_RS16905	PF00366	Ribosomal protein S17
AU28_RS16910	PF00831	Ribosomal L29 protein
AU28_RS16915	PF00252	Ribosomal protein L16p/L10e
AU28_RS16920	PF00189	Ribosomal protein S3, C-terminal domain
AU28_RS16920	PF07650	KH domain
AU28_RS16925	PF00237	Ribosomal protein L22p/L17e
AU28_RS16930	PF00203	Ribosomal protein S19
AU28_RS16935	PF00181	Ribosomal Proteins L2, RNA binding domain
AU28_RS16935	PF03947	Ribosomal Proteins L2, C-terminal domain
AU28_RS16940	PF00276	Ribosomal protein L23
AU28_RS16945	PF00573	Ribosomal protein L4/L1 family
AU28_RS16950	PF00297	Ribosomal protein L3
AU28_RS16955	PF00338	Ribosomal protein S10p/S20e
AU28_RS16960	PF01478	Type IV leader peptidase family
AU28_RS16965	PF00210	Ferritin-like domain
AU28_RS16970	PF04324	BFD-like [2Fe-2S] binding domain
AU28_RS16975	PF00009	Elongation factor Tu GTP binding domain
AU28_RS16975	PF03143	Elongation factor Tu C-terminal domain
AU28_RS16975	PF03144	Elongation factor Tu domain 2
AU28_RS16980	PF00009	Elongation factor Tu GTP binding domain
AU28_RS16980	PF00679	Elongation factor G C-terminus
AU28_RS16980	PF03144	Elongation factor Tu domain 2
AU28_RS16980	PF03764	Elongation factor G, domain IV
AU28_RS16980	PF14492	Elongation Factor G, domain II
AU28_RS16985	PF00177	Ribosomal protein S7p/S5e
AU28_RS16990	PF00164	Ribosomal protein S12/S23
AU28_RS16995	PF04077	DsrH like protein
AU28_RS17000	PF02635	DsrE/DsrF-like family
AU28_RS17005	PF02635	DsrE/DsrF-like family
AU28_RS17010	PF08348	AU28_RS17010
AU28_RS17010	PF13309	AU28_RS17010
AU28_RS17015	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AU28_RS17015	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AU28_RS17020	PF04102	SlyX
AU28_RS17025	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AU28_RS17030	PF09526	AU28_RS17030
AU28_RS17035	PF00999	Sodium/hydrogen exchanger family
AU28_RS17035	PF02254	TrkA-N domain
AU28_RS17040	PF02525	Flavodoxin-like fold
AU28_RS17045	PF00005	ABC transporter
AU28_RS17045	PF12848	ABC transporter
AU28_RS17055	PF08803	Putative mono-oxygenase ydhR
AU28_RS17060	PF00561	alpha/beta hydrolase fold
AU28_RS17065	PF06794	Uncharacterised protein family (UPF0270)
AU28_RS17070	PF00485	Phosphoribulokinase / Uridine kinase family
AU28_RS17075	PF02566	OsmC-like protein
AU28_RS17080	PF00027	Cyclic nucleotide-binding domain
AU28_RS17080	PF00325	Bacterial regulatory proteins, crp family
AU28_RS17085	PF12805	AU28_RS17085
AU28_RS17085	PF13515	AU28_RS17085
AU28_RS17090	PF00202	Aminotransferase class-III
AU28_RS17095	PF00117	Glutamine amidotransferase class-I
AU28_RS17100	PF02661	Fic/DOC family
AU28_RS17105	PF10832	AU28_RS17105
AU28_RS17110	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AU28_RS17115	PF07690	Major Facilitator Superfamily
AU28_RS17120	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AU28_RS17120	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AU28_RS17120	PF04324	BFD-like [2Fe-2S] binding domain
AU28_RS17120	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS17125	PF13806	Rieske-like [2Fe-2S] domain
AU28_RS17130	PF01226	Formate/nitrite transporter
AU28_RS17135	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AU28_RS17135	PF10414	Sirohaem synthase dimerisation region
AU28_RS17135	PF13241	Putative NAD(P)-binding
AU28_RS17135	PF14824	Sirohaem biosynthesis protein central
AU28_RS17140	PF03797	Autotransporter beta-domain
AU28_RS17145	PF13978	AU28_RS17145
AU28_RS17150	PF00579	tRNA synthetases class I (W and Y)
AU28_RS17155	PF13419	Haloacid dehalogenase-like hydrolase
AU28_RS17160	PF00834	Ribulose-phosphate 3 epimerase family
AU28_RS17165	PF02086	D12 class N6 adenine-specific DNA methyltransferase
AU28_RS17170	PF05036	Sporulation related domain
AU28_RS17175	PF01761	3-dehydroquinate synthase
AU28_RS17180	PF01202	Shikimate kinase
AU28_RS17185	PF00263	AU28_RS17185
AU28_RS17185	PF03958	Bacterial type II/III secretion system short domain
AU28_RS17190	PF10748	AU28_RS17190
AU28_RS17200	PF05137	AU28_RS17200
AU28_RS17210	PF00905	Penicillin binding protein transpeptidase domain
AU28_RS17210	PF00912	Transglycosylase
AU28_RS17210	PF17092	AU28_RS17210
AU28_RS17215	PF00293	NUDIX domain
AU28_RS17220	PF07095	Intracellular growth attenuator protein IgaA
AU28_RS17225	PF13419	Haloacid dehalogenase-like hydrolase
AU28_RS17230	PF01479	S4 domain
AU28_RS17235	PF01430	Hsp33 protein
AU28_RS17240	PF13687	AU28_RS17240
AU28_RS17245	PF01293	Phosphoenolpyruvate carboxykinase
AU28_RS17250	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS17250	PF00672	HAMP domain
AU28_RS17250	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS17255	PF00072	Response regulator receiver domain
AU28_RS17255	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS17260	PF01272	Transcription elongation factor, GreA/GreB, C-term
AU28_RS17260	PF03449	Transcription elongation factor, N-terminal
AU28_RS17265	PF00575	S1 RNA binding domain
AU28_RS17265	PF09371	Tex-like protein N-terminal domain
AU28_RS17265	PF12836	Helix-hairpin-helix motif
AU28_RS17265	PF16921	AU28_RS17265
AU28_RS17270	PF04023	FeoA domain
AU28_RS17275	PF02421	Ferrous iron transport protein B
AU28_RS17275	PF07664	AU28_RS17275
AU28_RS17275	PF07670	Nucleoside recognition
AU28_RS17280	PF09012	FeoC like transcriptional regulator
AU28_RS17285	PF04754	AU28_RS17285
AU28_RS17290	PF00561	alpha/beta hydrolase fold
AU28_RS17295	PF00156	Phosphoribosyl transferase domain
AU28_RS17300	PF01106	NifU-like domain
AU28_RS17300	PF01521	Iron-sulphur cluster biosynthesis
AU28_RS17305	PF02447	AU28_RS17305
AU28_RS17310	PF02446	4-alpha-glucanotransferase
AU28_RS17315	PF00343	Carbohydrate phosphorylase
AU28_RS17320	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS17325	PF15738	AU28_RS17325
AU28_RS17330	PF04221	RelB antitoxin
AU28_RS17335	PF01137	RNA 3'-terminal phosphate cyclase
AU28_RS17335	PF05189	RNA 3'-terminal phosphate cyclase (RTC), insert domain
AU28_RS17340	PF01139	tRNA-splicing ligase RtcB
AU28_RS17345	PF05731	TROVE domain
AU28_RS17350	PF00158	Sigma-54 interaction domain
AU28_RS17350	PF06956	AU28_RS17350
AU28_RS17355	PF00455	AU28_RS17355
AU28_RS17355	PF08220	DeoR-like helix-turn-helix domain
AU28_RS17360	PF01694	Rhomboid family
AU28_RS17360	PF12122	Protein of unknown function (DUF3582)
AU28_RS17365	PF00581	Rhodanese-like domain
AU28_RS17370	PF01266	FAD dependent oxidoreductase
AU28_RS17370	PF16901	AU28_RS17370
AU28_RS17380	PF12849	PBP superfamily domain
AU28_RS17385	PF00465	Iron-containing alcohol dehydrogenase
AU28_RS17390	PF07690	Major Facilitator Superfamily
AU28_RS17395	PF00920	Dehydratase family
AU28_RS17400	PF00701	Dihydrodipicolinate synthetase family
AU28_RS17405	PF01614	Bacterial transcriptional regulator
AU28_RS17405	PF09339	IclR helix-turn-helix domain
AU28_RS17410	PF00343	Carbohydrate phosphorylase
AU28_RS17415	PF00534	Glycosyl transferases group 1
AU28_RS17415	PF08323	Starch synthase catalytic domain
AU28_RS17420	PF00483	Nucleotidyl transferase
AU28_RS17425	PF00128	Alpha amylase, catalytic domain
AU28_RS17425	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AU28_RS17430	PF00128	Alpha amylase, catalytic domain
AU28_RS17430	PF02806	Alpha amylase, C-terminal all-beta domain
AU28_RS17430	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AU28_RS17435	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AU28_RS17435	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AU28_RS17440	PF02447	AU28_RS17440
AU28_RS17445	PF01202	Shikimate kinase
AU28_RS17450	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS17450	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AU28_RS17455	PF02678	Pirin
AU28_RS17460	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AU28_RS17460	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
AU28_RS17465	PF00583	Acetyltransferase (GNAT) family
AU28_RS17470	PF00294	pfkB family carbohydrate kinase
AU28_RS17470	PF08220	DeoR-like helix-turn-helix domain
AU28_RS17475	PF07090	Protein of unknown function (DUF1355)
AU28_RS17480	PF04657	AU28_RS17480
AU28_RS17485	PF02126	Phosphotriesterase family
AU28_RS17490	PF01019	Gamma-glutamyltranspeptidase
AU28_RS17495	PF10956	AU28_RS17495
AU28_RS17500	PF03009	Glycerophosphoryl diester phosphodiesterase family
AU28_RS17505	PF00005	ABC transporter
AU28_RS17505	PF08402	TOBE domain
AU28_RS17510	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS17515	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS17520	PF13416	Bacterial extracellular solute-binding protein
AU28_RS17525	PF02661	Fic/DOC family
AU28_RS17530	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AU28_RS17535	PF00005	ABC transporter
AU28_RS17540	PF00005	ABC transporter
AU28_RS17540	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AU28_RS17545	PF02653	AU28_RS17545
AU28_RS17545	PF11862	AU28_RS17545
AU28_RS17550	PF02653	AU28_RS17550
AU28_RS17555	PF13458	Periplasmic binding protein
AU28_RS17560	PF12568	Acetyltransferase (GNAT) domain
AU28_RS17570	PF13458	Periplasmic binding protein
AU28_RS17575	PF04542	Sigma-70 region 2
AU28_RS17575	PF04545	Sigma-70, region 4
AU28_RS17580	PF02687	AU28_RS17580
AU28_RS17585	PF00005	ABC transporter
AU28_RS17590	PF00448	SRP54-type protein, GTPase domain
AU28_RS17590	PF02881	SRP54-type protein, helical bundle domain
AU28_RS17595	PF03602	Conserved hypothetical protein 95
AU28_RS17600	PF06611	AU28_RS17600
AU28_RS17605	PF10694	Protein of unknown function (DUF2500)
AU28_RS17610	PF07947	AU28_RS17610
AU28_RS17615	PF00122	E1-E2 ATPase
AU28_RS17615	PF00403	Heavy-metal-associated domain
AU28_RS17615	PF00702	haloacid dehalogenase-like hydrolase
AU28_RS17620	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AU28_RS17620	PF00672	HAMP domain
AU28_RS17620	PF02203	Tar ligand binding domain homologue
AU28_RS17625	PF01206	Sulfurtransferase TusA
AU28_RS17630	PF02592	AU28_RS17630
AU28_RS17635	PF08786	Domain of unknown function (DUF1795)
AU28_RS17640	PF07690	Major Facilitator Superfamily
AU28_RS17645	PF01594	AU28_RS17645
AU28_RS17650	PF01648	4'-phosphopantetheinyl transferase superfamily
AU28_RS17655	PF01402	Ribbon-helix-helix protein, copG family
AU28_RS17655	PF08753	NikR C terminal nickel binding domain
AU28_RS17660	PF12698	ABC-2 family transporter protein
AU28_RS17665	PF00005	ABC transporter
AU28_RS17665	PF12698	ABC-2 family transporter protein
AU28_RS17670	PF13437	HlyD family secretion protein
AU28_RS17670	PF13533	Biotin-lipoyl like
AU28_RS17675	PF03486	HI0933-like protein
AU28_RS17680	PF01384	AU28_RS17680
AU28_RS17685	PF10625	AU28_RS17685
AU28_RS17690	PF00582	Universal stress protein family
AU28_RS17695	PF00854	POT family
AU28_RS17700	PF04445	Putative SAM-dependent methyltransferase
AU28_RS17705	PF01432	Peptidase family M3
AU28_RS17710	PF01569	PAP2 superfamily
AU28_RS17715	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
AU28_RS17720	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AU28_RS17720	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS17725	PF00710	Asparaginase
AU28_RS17730	PF03605	AU28_RS17730
AU28_RS17735	PF00294	pfkB family carbohydrate kinase
AU28_RS17740	PF01380	SIS domain
AU28_RS17745	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS17745	PF07702	UTRA domain
AU28_RS17750	PF01204	Trehalase
AU28_RS17765	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS17770	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS17770	PF03466	LysR substrate binding domain
AU28_RS17775	PF03631	AU28_RS17775
AU28_RS17780	PF00083	Sugar (and other) transporter
AU28_RS17780	PF07690	Major Facilitator Superfamily
AU28_RS17785	PF05170	AU28_RS17785
AU28_RS17790	PF00563	EAL domain
AU28_RS17795	PF00294	pfkB family carbohydrate kinase
AU28_RS17800	PF00675	Insulinase (Peptidase family M16)
AU28_RS17800	PF05193	Peptidase M16 inactive domain
AU28_RS17805	PF00375	Sodium:dicarboxylate symporter family
AU28_RS17810	PF00563	EAL domain
AU28_RS17810	PF00672	HAMP domain
AU28_RS17810	PF00990	GGDEF domain
AU28_RS17810	PF17154	AU28_RS17810
AU28_RS17815	PF05420	AU28_RS17815
AU28_RS17815	PF13176	Tetratricopeptide repeat
AU28_RS17815	PF13432	Tetratricopeptide repeat
AU28_RS17815	PF14559	Tetratricopeptide repeat
AU28_RS17820	PF01270	Glycosyl hydrolases family 8
AU28_RS17825	PF03170	Bacterial cellulose synthase subunit
AU28_RS17830	PF00535	Glycosyl transferase family 2
AU28_RS17830	PF03552	Cellulose synthase
AU28_RS17830	PF07238	PilZ domain
AU28_RS17835	PF06564	YhjQ protein
AU28_RS17840	PF10945	AU28_RS17840
AU28_RS17845	PF10995	AU28_RS17845
AU28_RS17850	PF11120	AU28_RS17850
AU28_RS17855	PF11658	AU28_RS17855
AU28_RS17860	PF13940	AU28_RS17860
AU28_RS17865	PF01053	Cys/Met metabolism PLP-dependent enzyme
AU28_RS17870	PF03222	Tryptophan/tyrosine permease family
AU28_RS17875	PF00005	ABC transporter
AU28_RS17875	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AU28_RS17880	PF00005	ABC transporter
AU28_RS17880	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AU28_RS17885	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS17885	PF12911	AU28_RS17885
AU28_RS17890	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS17895	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AU28_RS17900	PF00860	Permease family
AU28_RS17905	PF14269	AU28_RS17905
AU28_RS17910	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS17910	PF13377	Periplasmic binding protein-like domain
AU28_RS17930	PF00884	Sulfatase
AU28_RS17930	PF08019	AU28_RS17930
AU28_RS17935	PF00419	Fimbrial protein
AU28_RS17940	PF00419	Fimbrial protein
AU28_RS17945	PF00577	Outer membrane usher protein
AU28_RS17945	PF13953	PapC C-terminal domain
AU28_RS17945	PF13954	PapC N-terminal domain
AU28_RS17950	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS17950	PF02753	Pili assembly chaperone PapD, C-terminal domain
AU28_RS17955	PF00419	Fimbrial protein
AU28_RS17960	PF03797	Autotransporter beta-domain
AU28_RS17965	PF03352	Methyladenine glycosylase
AU28_RS17970	PF13673	Acetyltransferase (GNAT) domain
AU28_RS17975	PF00384	Molybdopterin oxidoreductase
AU28_RS17975	PF01568	Molydopterin dinucleotide binding domain
AU28_RS17980	PF00691	OmpA family
AU28_RS17980	PF13488	AU28_RS17980
AU28_RS17985	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AU28_RS17985	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AU28_RS17990	PF11254	AU28_RS17990
AU28_RS18000	PF00313	'Cold-shock' DNA-binding domain
AU28_RS18010	PF13673	Acetyltransferase (GNAT) domain
AU28_RS18015	PF08681	Protein of unknown function (DUF1778)
AU28_RS18020	PF13673	Acetyltransferase (GNAT) domain
AU28_RS18030	PF02092	AU28_RS18030
AU28_RS18030	PF05746	DALR anticodon binding domain
AU28_RS18035	PF02091	Glycyl-tRNA synthetase alpha subunit
AU28_RS18040	PF13983	AU28_RS18040
AU28_RS18045	PF01757	AU28_RS18045
AU28_RS18050	PF05360	AU28_RS18050
AU28_RS18055	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AU28_RS18055	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AU28_RS18065	PF12833	Helix-turn-helix domain
AU28_RS18065	PF13377	Periplasmic binding protein-like domain
AU28_RS18070	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AU28_RS18080	PF00128	Alpha amylase, catalytic domain
AU28_RS18085	PF00155	Aminotransferase class I and II
AU28_RS18090	PF13247	4Fe-4S dicluster domain
AU28_RS18095	PF01614	Bacterial transcriptional regulator
AU28_RS18095	PF09339	IclR helix-turn-helix domain
AU28_RS18100	PF02615	Malate/L-lactate dehydrogenase
AU28_RS18105	PF04074	Domain of unknown function (DUF386)
AU28_RS18110	PF16154	AU28_RS18110
AU28_RS18115	PF04290	AU28_RS18115
AU28_RS18120	PF06808	AU28_RS18120
AU28_RS18125	PF03480	Bacterial extracellular solute-binding protein, family 7
AU28_RS18130	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AU28_RS18130	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AU28_RS18135	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AU28_RS18140	PF01261	Xylose isomerase-like TIM barrel
AU28_RS18145	PF00596	Class II Aldolase and Adducin N-terminal domain
AU28_RS18150	PF02311	AraC-like ligand binding domain
AU28_RS18150	PF12833	Helix-turn-helix domain
AU28_RS18155	PF07944	Putative glycosyl hydrolase of unknown function (DUF1680)
AU28_RS18160	PF00171	Aldehyde dehydrogenase family
AU28_RS18165	PF00480	ROK family
AU28_RS18170	PF00009	Elongation factor Tu GTP binding domain
AU28_RS18170	PF03144	Elongation factor Tu domain 2
AU28_RS18170	PF09106	Elongation factor SelB, winged helix
AU28_RS18170	PF09107	Elongation factor SelB, winged helix
AU28_RS18175	PF03841	L-seryl-tRNA selenium transferase
AU28_RS18175	PF12390	AU28_RS18175
AU28_RS18180	PF00043	Glutathione S-transferase, C-terminal domain
AU28_RS18180	PF13417	Glutathione S-transferase, N-terminal domain
AU28_RS18185	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AU28_RS18185	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AU28_RS18185	PF02378	Phosphotransferase system, EIIC
AU28_RS18190	PF01232	Mannitol dehydrogenase Rossmann domain
AU28_RS18190	PF08125	Mannitol dehydrogenase C-terminal domain
AU28_RS18195	PF05068	Mannitol repressor
AU28_RS18205	PF10928	Protein of unknown function (DUF2810)
AU28_RS18210	PF11622	Protein of unknown function (DUF3251)
AU28_RS18215	PF03895	YadA-like C-terminal region
AU28_RS18215	PF05658	Head domain of trimeric autotransporter adhesin
AU28_RS18215	PF05662	Coiled stalk of trimeric autotransporter adhesin
AU28_RS18215	PF13018	AU28_RS18215
AU28_RS18220	PF02652	AU28_RS18220
AU28_RS18225	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS18225	PF07729	FCD domain
AU28_RS18230	PF01070	FMN-dependent dehydrogenase
AU28_RS18235	PF00588	SpoU rRNA Methylase family
AU28_RS18240	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS18240	PF13377	Periplasmic binding protein-like domain
AU28_RS18245	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AU28_RS18245	PF13378	Enolase C-terminal domain-like
AU28_RS18250	PF07690	Major Facilitator Superfamily
AU28_RS18255	PF00132	Bacterial transferase hexapeptide (six repeats)
AU28_RS18255	PF06426	Serine acetyltransferase, N-terminal
AU28_RS18260	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
AU28_RS18260	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
AU28_RS18265	PF02556	Preprotein translocase subunit SecB
AU28_RS18270	PF00462	Glutaredoxin
AU28_RS18275	PF00581	Rhodanese-like domain
AU28_RS18280	PF01676	Metalloenzyme superfamily
AU28_RS18280	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
AU28_RS18285	PF01551	Peptidase family M23
AU28_RS18290	PF04748	Divergent polysaccharide deacetylase
AU28_RS18295	PF00535	Glycosyl transferase family 2
AU28_RS18300	PF00107	Zinc-binding dehydrogenase
AU28_RS18300	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS18305	PF00155	Aminotransferase class I and II
AU28_RS18310	PF01370	NAD dependent epimerase/dehydratase family
AU28_RS18315	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AU28_RS18320	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AU28_RS18325	PF04932	AU28_RS18325
AU28_RS18330	PF00534	Glycosyl transferases group 1
AU28_RS18340	PF06176	Lipopolysaccharide core biosynthesis protein (WaaY)
AU28_RS18345	PF01501	Glycosyl transferase family 8
AU28_RS18345	PF08437	AU28_RS18345
AU28_RS18350	PF01501	Glycosyl transferase family 8
AU28_RS18350	PF08437	AU28_RS18350
AU28_RS18355	PF00534	Glycosyl transferases group 1
AU28_RS18365	PF06293	Lipopolysaccharide kinase (Kdo/WaaP) family
AU28_RS18370	PF00534	Glycosyl transferases group 1
AU28_RS18370	PF13439	Glycosyltransferase Family 4
AU28_RS18375	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AU28_RS18380	PF00534	Glycosyl transferases group 1
AU28_RS18380	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
AU28_RS18385	PF01467	Cytidylyltransferase
AU28_RS18390	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
AU28_RS18390	PF06827	Zinc finger found in FPG and IleRS
AU28_RS18390	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
AU28_RS18395	PF00471	Ribosomal protein L33
AU28_RS18400	PF00830	Ribosomal L28 family
AU28_RS18405	PF04002	RadC-like JAB domain
AU28_RS18410	PF02441	Flavoprotein
AU28_RS18410	PF04127	DNA / pantothenate metabolism flavoprotein
AU28_RS18415	PF00692	dUTPase
AU28_RS18420	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS18425	PF00156	Phosphoribosyl transferase domain
AU28_RS18430	PF01138	3' exoribonuclease family, domain 1
AU28_RS18430	PF03725	3' exoribonuclease family, domain 2
AU28_RS18435	PF03755	AU28_RS18435
AU28_RS18435	PF08340	AU28_RS18435
AU28_RS18440	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS18440	PF03466	LysR substrate binding domain
AU28_RS18445	PF00753	Metallo-beta-lactamase superfamily
AU28_RS18450	PF03458	AU28_RS18450
AU28_RS18455	PF01653	NAD-dependent DNA ligase adenylation domain
AU28_RS18455	PF03120	NAD-dependent DNA ligase OB-fold domain
AU28_RS18460	PF00625	Guanylate kinase
AU28_RS18465	PF01192	RNA polymerase Rpb6
AU28_RS18470	PF02824	TGS domain
AU28_RS18470	PF04607	Region found in RelA / SpoT proteins
AU28_RS18470	PF13291	ACT domain
AU28_RS18470	PF13328	HD domain
AU28_RS18475	PF00588	SpoU rRNA Methylase family
AU28_RS18475	PF12105	SpoU, rRNA methylase, C-terminal
AU28_RS18480	PF00270	DEAD/DEAH box helicase
AU28_RS18480	PF00271	Helicase conserved C-terminal domain
AU28_RS18480	PF17191	AU28_RS18480
AU28_RS18485	PF03616	AU28_RS18485
AU28_RS18490	PF00860	Permease family
AU28_RS18495	PF05170	AU28_RS18495
AU28_RS18500	PF01055	Glycosyl hydrolases family 31
AU28_RS18500	PF13802	Galactose mutarotase-like
AU28_RS18505	PF13347	MFS/sugar transport protein
AU28_RS18530	PF13310	AU28_RS18530
AU28_RS18540	PF03212	Pertactin
AU28_RS18540	PF03797	Autotransporter beta-domain
AU28_RS18550	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS18555	PF00857	Isochorismatase family
AU28_RS18565	PF00122	E1-E2 ATPase
AU28_RS18565	PF00689	Cation transporting ATPase, C-terminus
AU28_RS18565	PF00690	Cation transporter/ATPase, N-terminus
AU28_RS18565	PF00702	haloacid dehalogenase-like hydrolase
AU28_RS18570	PF02308	AU28_RS18570
AU28_RS18575	PF00892	EamA-like transporter family
AU28_RS18580	PF04754	AU28_RS18580
AU28_RS18585	PF07071	Protein of unknown function (DUF1341)
AU28_RS18590	PF03841	L-seryl-tRNA selenium transferase
AU28_RS18595	PF03613	AU28_RS18595
AU28_RS18600	PF03609	AU28_RS18600
AU28_RS18605	PF03830	PTS system sorbose subfamily IIB component
AU28_RS18610	PF03610	PTS system fructose IIA component
AU28_RS18615	PF00158	Sigma-54 interaction domain
AU28_RS18615	PF00874	PRD domain
AU28_RS18625	PF00232	Glycosyl hydrolase family 1
AU28_RS18630	PF07690	Major Facilitator Superfamily
AU28_RS18635	PF06296	AU28_RS18635
AU28_RS18640	PF01381	Helix-turn-helix
AU28_RS18645	PF06711	AU28_RS18645
AU28_RS18650	PF07690	Major Facilitator Superfamily
AU28_RS18655	PF07690	Major Facilitator Superfamily
AU28_RS18660	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS18660	PF05231	AU28_RS18660
AU28_RS18660	PF07730	Histidine kinase
AU28_RS18665	PF00072	Response regulator receiver domain
AU28_RS18665	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS18670	PF14486	Domain of unknown function (DUF4432)
AU28_RS18675	PF07690	Major Facilitator Superfamily
AU28_RS18680	PF00294	pfkB family carbohydrate kinase
AU28_RS18685	PF00455	AU28_RS18685
AU28_RS18685	PF08220	DeoR-like helix-turn-helix domain
AU28_RS18690	PF13710	ACT domain
AU28_RS18695	PF00205	Thiamine pyrophosphate enzyme, central domain
AU28_RS18695	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AU28_RS18695	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AU28_RS18700	PF08049	AU28_RS18700
AU28_RS18705	PF13939	AU28_RS18705
AU28_RS18710	PF00892	EamA-like transporter family
AU28_RS18715	PF07690	Major Facilitator Superfamily
AU28_RS18720	PF00150	Cellulase (glycosyl hydrolase family 5)
AU28_RS18725	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS18725	PF03466	LysR substrate binding domain
AU28_RS18730	PF02447	AU28_RS18730
AU28_RS18735	PF00291	Pyridoxal-phosphate dependent enzyme
AU28_RS18745	PF02656	AU28_RS18745
AU28_RS18750	PF02656	AU28_RS18750
AU28_RS18755	PF02080	TrkA-C domain
AU28_RS18755	PF06826	AU28_RS18755
AU28_RS18760	PF00011	Hsp20/alpha crystallin family
AU28_RS18765	PF00011	Hsp20/alpha crystallin family
AU28_RS18770	PF07119	AU28_RS18770
AU28_RS18775	PF12566	AU28_RS18775
AU28_RS18780	PF03918	Cytochrome C biogenesis protein
AU28_RS18780	PF14559	Tetratricopeptide repeat
AU28_RS18785	PF08534	Redoxin
AU28_RS18790	PF01578	AU28_RS18790
AU28_RS18790	PF16327	AU28_RS18790
AU28_RS18795	PF03100	CcmE
AU28_RS18800	PF04995	AU28_RS18800
AU28_RS18805	PF01578	AU28_RS18805
AU28_RS18810	PF03379	AU28_RS18810
AU28_RS18815	PF00005	ABC transporter
AU28_RS18820	PF00034	Cytochrome c
AU28_RS18820	PF03150	Di-haem cytochrome c peroxidase
AU28_RS18820	PF14376	AU28_RS18820
AU28_RS18825	PF02613	Nitrate reductase delta subunit
AU28_RS18830	PF00384	Molybdopterin oxidoreductase
AU28_RS18830	PF01568	Molydopterin dinucleotide binding domain
AU28_RS18835	PF03264	NapC/NirT cytochrome c family, N-terminal region
AU28_RS18840	PF00072	Response regulator receiver domain
AU28_RS18840	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS18845	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AU28_RS18850	PF00072	Response regulator receiver domain
AU28_RS18850	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS18850	PF00672	HAMP domain
AU28_RS18850	PF01627	Hpt domain
AU28_RS18850	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS18855	PF07690	Major Facilitator Superfamily
AU28_RS18860	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AU28_RS18860	PF13378	Enolase C-terminal domain-like
AU28_RS18865	PF01081	KDPG and KHG aldolase
AU28_RS18870	PF05035	2-keto-3-deoxy-galactonokinase
AU28_RS18875	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS18875	PF07729	FCD domain
AU28_RS18880	PF08282	haloacid dehalogenase-like hydrolase
AU28_RS18885	PF07690	Major Facilitator Superfamily
AU28_RS18890	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AU28_RS18890	PF13378	Enolase C-terminal domain-like
AU28_RS18895	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS18895	PF03466	LysR substrate binding domain
AU28_RS18900	PF00204	DNA gyrase B
AU28_RS18900	PF00986	DNA gyrase B subunit, carboxyl terminus
AU28_RS18900	PF01751	Toprim domain
AU28_RS18900	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS18905	PF02463	RecF/RecN/SMC N terminal domain
AU28_RS18910	PF00712	DNA polymerase III beta subunit, N-terminal domain
AU28_RS18910	PF02767	DNA polymerase III beta subunit, central domain
AU28_RS18910	PF02768	DNA polymerase III beta subunit, C-terminal domain
AU28_RS18915	PF00308	Bacterial dnaA  protein
AU28_RS18915	PF08299	Bacterial dnaA protein helix-turn-helix
AU28_RS18915	PF11638	DnaA N-terminal domain
AU28_RS18920	PF00468	Ribosomal protein L34
AU28_RS18925	PF00825	Ribonuclease P
AU28_RS18930	PF01809	AU28_RS18930
AU28_RS18935	PF02096	60Kd inner membrane protein
AU28_RS18935	PF14849	YidC periplasmic domain
AU28_RS18940	PF01926	50S ribosome-binding GTPase
AU28_RS18940	PF10396	GTP-binding protein TrmE N-terminus
AU28_RS18940	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
AU28_RS18945	PF07690	Major Facilitator Superfamily
AU28_RS18950	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS18950	PF03466	LysR substrate binding domain
AU28_RS18960	PF03358	NADPH-dependent FMN reductase
AU28_RS18965	PF00860	Permease family
AU28_RS18970	PF13419	Haloacid dehalogenase-like hydrolase
AU28_RS18975	PF01895	PhoU domain
AU28_RS18980	PF00005	ABC transporter
AU28_RS18985	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS18990	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS18995	PF12849	PBP superfamily domain
AU28_RS19000	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AU28_RS19000	PF02378	Phosphotransferase system, EIIC
AU28_RS19005	PF08501	Shikimate dehydrogenase substrate binding domain
AU28_RS19010	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AU28_RS19010	PF12793	AU28_RS19010
AU28_RS19015	PF01380	SIS domain
AU28_RS19015	PF13522	Glutamine amidotransferase domain
AU28_RS19020	PF00132	Bacterial transferase hexapeptide (six repeats)
AU28_RS19020	PF12804	MobA-like NTP transferase domain
AU28_RS19025	PF01027	Inhibitor of apoptosis-promoting Bax1
AU28_RS19030	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
AU28_RS19030	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
AU28_RS19035	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AU28_RS19035	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AU28_RS19040	PF00231	ATP synthase
AU28_RS19045	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AU28_RS19045	PF00306	ATP synthase alpha/beta chain, C terminal domain
AU28_RS19045	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AU28_RS19050	PF00213	ATP synthase delta (OSCP) subunit
AU28_RS19055	PF00430	ATP synthase B/B' CF(0)
AU28_RS19060	PF00137	ATP synthase subunit C
AU28_RS19065	PF00119	ATP synthase A chain
AU28_RS19070	PF03899	AU28_RS19070
AU28_RS19075	PF02527	rRNA small subunit methyltransferase G
AU28_RS19080	PF01134	Glucose inhibited division protein A
AU28_RS19080	PF13932	GidA associated domain 3
AU28_RS19085	PF00258	Flavodoxin
AU28_RS19090	PF01037	AsnC family
AU28_RS19090	PF13412	Winged helix-turn-helix DNA-binding
AU28_RS19095	PF03590	Aspartate-ammonia ligase
AU28_RS19100	PF05762	VWA domain containing CoxE-like protein
AU28_RS19105	PF07728	AAA domain (dynein-related subfamily)
AU28_RS19105	PF12592	Protein of unknown function (DUF3763)
AU28_RS19110	PF02705	AU28_RS19110
AU28_RS19115	PF05025	RbsD / FucU transport protein family
AU28_RS19120	PF00005	ABC transporter
AU28_RS19125	PF02653	AU28_RS19125
AU28_RS19130	PF13407	Periplasmic binding protein domain
AU28_RS19135	PF00294	pfkB family carbohydrate kinase
AU28_RS19140	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS19140	PF13377	Periplasmic binding protein-like domain
AU28_RS19150	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS19150	PF07729	FCD domain
AU28_RS19185	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS19185	PF03466	LysR substrate binding domain
AU28_RS19190	PF04219	AU28_RS19190
AU28_RS19195	PF01078	Magnesium chelatase, subunit ChlI
AU28_RS19195	PF13335	AU28_RS19195
AU28_RS19195	PF13541	Subunit ChlI of Mg-chelatase
AU28_RS19200	PF08046	AU28_RS19200
AU28_RS19205	PF00205	Thiamine pyrophosphate enzyme, central domain
AU28_RS19205	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AU28_RS19205	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AU28_RS19210	PF13710	ACT domain
AU28_RS19215	PF01063	Aminotransferase class IV
AU28_RS19220	PF00920	Dehydratase family
AU28_RS19225	PF00291	Pyridoxal-phosphate dependent enzyme
AU28_RS19225	PF00585	C-terminal regulatory domain of Threonine dehydratase
AU28_RS19230	PF05973	AU28_RS19230
AU28_RS19235	PF13744	Helix-turn-helix domain
AU28_RS19240	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS19240	PF03466	LysR substrate binding domain
AU28_RS19245	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
AU28_RS19245	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
AU28_RS19250	PF13616	PPIC-type PPIASE domain
AU28_RS19260	PF00580	UvrD/REP helicase N-terminal domain
AU28_RS19260	PF13361	UvrD-like helicase C-terminal domain
AU28_RS19265	PF02541	Ppx/GppA phosphatase family
AU28_RS19270	PF00270	DEAD/DEAH box helicase
AU28_RS19270	PF00271	Helicase conserved C-terminal domain
AU28_RS19275	PF00085	Thioredoxin
AU28_RS19280	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AU28_RS19280	PF07497	Rho termination factor, RNA-binding domain
AU28_RS19280	PF07498	Rho termination factor, N-terminal domain
AU28_RS19285	PF00953	Glycosyl transferase family 4
AU28_RS19290	PF02706	Chain length determinant protein
AU28_RS19295	PF02350	UDP-N-acetylglucosamine 2-epimerase
AU28_RS19300	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
AU28_RS19300	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
AU28_RS19300	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AU28_RS19305	PF16363	AU28_RS19305
AU28_RS19310	PF00483	Nucleotidyl transferase
AU28_RS19320	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
AU28_RS19325	PF01943	AU28_RS19325
AU28_RS19330	PF07429	AU28_RS19330
AU28_RS19335	PF06899	AU28_RS19335
AU28_RS19340	PF03808	AU28_RS19340
AU28_RS19345	PF00324	Amino acid permease
AU28_RS19370	PF07219	AU28_RS19370
AU28_RS19370	PF07719	Tetratricopeptide repeat
AU28_RS19375	PF04375	AU28_RS19375
AU28_RS19380	PF02602	Uroporphyrinogen-III synthase HemD
AU28_RS19385	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
AU28_RS19385	PF03900	Porphobilinogen deaminase, C-terminal domain
AU28_RS19390	PF01295	AU28_RS19390
AU28_RS19390	PF12633	AU28_RS19390
AU28_RS19395	PF01491	Frataxin-like domain
AU28_RS19400	PF11457	AU28_RS19400
AU28_RS19410	PF13627	AU28_RS19410
AU28_RS19415	PF01678	Diaminopimelate epimerase
AU28_RS19420	PF04340	Protein of unknown function, DUF484
AU28_RS19425	PF00589	Phage integrase family
AU28_RS19425	PF02899	Phage integrase, N-terminal SAM-like domain
AU28_RS19430	PF13419	Haloacid dehalogenase-like hydrolase
AU28_RS19435	PF00580	UvrD/REP helicase N-terminal domain
AU28_RS19435	PF13361	UvrD-like helicase C-terminal domain
AU28_RS19440	PF01544	CorA-like Mg2+ transporter protein
AU28_RS19455	PF00892	EamA-like transporter family
AU28_RS19460	PF03061	Thioesterase superfamily
AU28_RS19465	PF02253	Phospholipase A1
AU28_RS19470	PF00270	DEAD/DEAH box helicase
AU28_RS19470	PF00271	Helicase conserved C-terminal domain
AU28_RS19470	PF00570	HRDC domain
AU28_RS19470	PF09382	RQC domain
AU28_RS19470	PF16124	AU28_RS19470
AU28_RS19475	PF01810	AU28_RS19475
AU28_RS19480	PF01810	AU28_RS19480
AU28_RS19485	PF12146	Putative lysophospholipase
AU28_RS19490	PF08282	haloacid dehalogenase-like hydrolase
AU28_RS19495	PF00892	EamA-like transporter family
AU28_RS19500	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS19500	PF03466	LysR substrate binding domain
AU28_RS19505	PF01717	Cobalamin-independent synthase, Catalytic domain
AU28_RS19505	PF08267	Cobalamin-independent synthase, N-terminal domain
AU28_RS19510	PF02810	SEC-C motif
AU28_RS19510	PF04055	Radical SAM superfamily
AU28_RS19510	PF13186	Iron-sulfur cluster-binding domain
AU28_RS19515	PF01738	Dienelactone hydrolase family
AU28_RS19520	PF01048	Phosphorylase superfamily
AU28_RS19525	PF02646	AU28_RS19525
AU28_RS19530	PF01209	ubiE/COQ5 methyltransferase family
AU28_RS19535	PF02036	SCP-2 sterol transfer family
AU28_RS19540	PF03109	AU28_RS19540
AU28_RS19545	PF02416	mttA/Hcf106 family
AU28_RS19555	PF00902	Sec-independent protein translocase protein (TatC)
AU28_RS19560	PF01026	TatD related DNase
AU28_RS19565	PF02357	Transcription termination factor nusG
AU28_RS19570	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
AU28_RS19575	PF00175	Oxidoreductase NAD-binding domain
AU28_RS19575	PF00970	Oxidoreductase FAD-binding domain
AU28_RS19580	PF05935	Arylsulfotransferase (ASST)
AU28_RS19585	PF00108	Thiolase, N-terminal domain
AU28_RS19585	PF02803	Thiolase, C-terminal domain
AU28_RS19590	PF00378	Enoyl-CoA hydratase/isomerase family
AU28_RS19590	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AU28_RS19590	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AU28_RS19595	PF00557	Metallopeptidase family M24
AU28_RS19600	PF01205	Uncharacterized protein family UPF0029
AU28_RS19600	PF09186	Domain of unknown function (DUF1949)
AU28_RS19605	PF02386	Cation transport protein
AU28_RS19610	PF12724	Flavodoxin domain
AU28_RS19640	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
AU28_RS19645	PF12804	MobA-like NTP transferase domain
AU28_RS19650	PF06288	Protein of unknown function (DUF1040)
AU28_RS19655	PF01636	Phosphotransferase enzyme family
AU28_RS19660	PF01323	DSBA-like thioredoxin domain
AU28_RS19665	PF01553	Acyltransferase
AU28_RS19675	PF00476	DNA polymerase family A
AU28_RS19675	PF01367	5'-3' exonuclease, C-terminal SAM fold
AU28_RS19675	PF01612	3'-5' exonuclease
AU28_RS19675	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AU28_RS19680	PF01926	50S ribosome-binding GTPase
AU28_RS19690	PF04220	AU28_RS19690
AU28_RS19695	PF04055	Radical SAM superfamily
AU28_RS19695	PF06969	HemN C-terminal domain
AU28_RS19700	PF00072	Response regulator receiver domain
AU28_RS19700	PF00158	Sigma-54 interaction domain
AU28_RS19700	PF02954	Bacterial regulatory protein, Fis family
AU28_RS19705	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS19705	PF00989	PAS fold
AU28_RS19705	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS19710	PF00120	Glutamine synthetase, catalytic domain
AU28_RS19710	PF03951	Glutamine synthetase, beta-Grasp domain
AU28_RS19715	PF00009	Elongation factor Tu GTP binding domain
AU28_RS19715	PF00679	Elongation factor G C-terminus
AU28_RS19715	PF03144	Elongation factor Tu domain 2
AU28_RS19720	PF08282	haloacid dehalogenase-like hydrolase
AU28_RS19730	PF04055	Radical SAM superfamily
AU28_RS19730	PF06969	HemN C-terminal domain
AU28_RS19735	PF00884	Sulfatase
AU28_RS19750	PF06178	Oligogalacturonate-specific porin protein (KdgM)
AU28_RS19760	PF13347	MFS/sugar transport protein
AU28_RS19765	PF01055	Glycosyl hydrolases family 31
AU28_RS19770	PF01263	Aldose 1-epimerase
AU28_RS19775	PF07221	N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
AU28_RS19780	PF01791	DeoC/LacD family aldolase
AU28_RS19785	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AU28_RS19785	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AU28_RS19790	PF00294	pfkB family carbohydrate kinase
AU28_RS19795	PF00455	AU28_RS19795
AU28_RS19795	PF08220	DeoR-like helix-turn-helix domain
AU28_RS19800	PF13419	Haloacid dehalogenase-like hydrolase
AU28_RS19805	PF03631	AU28_RS19805
AU28_RS19810	PF02580	D-Tyr-tRNA(Tyr) deacylase
AU28_RS19815	PF00583	Acetyltransferase (GNAT) family
AU28_RS19815	PF09500	Putative thioesterase (yiiD_Cterm)
AU28_RS19820	PF01381	Helix-turn-helix
AU28_RS19825	PF09907	AU28_RS19825
AU28_RS19830	PF07859	alpha/beta hydrolase fold
AU28_RS19840	PF13560	Helix-turn-helix domain
AU28_RS19845	PF04216	Protein involved in formate dehydrogenase formation
AU28_RS19850	PF01292	Prokaryotic cytochrome b561
AU28_RS19855	PF09163	Formate dehydrogenase N, transmembrane
AU28_RS19855	PF13247	4Fe-4S dicluster domain
AU28_RS19860	PF00384	Molybdopterin oxidoreductase
AU28_RS19860	PF01568	Molydopterin dinucleotide binding domain
AU28_RS19865	PF00384	Molybdopterin oxidoreductase
AU28_RS19865	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AU28_RS19870	PF02634	FdhD/NarQ family
AU28_RS19875	PF12889	Protein of unknown function (DUF3829)
AU28_RS19880	PF12889	Protein of unknown function (DUF3829)
AU28_RS19885	PF12889	Protein of unknown function (DUF3829)
AU28_RS19890	PF05437	AU28_RS19890
AU28_RS19895	PF03591	AU28_RS19895
AU28_RS19900	PF01381	Helix-turn-helix
AU28_RS19905	PF05336	Domain of unknown function (DUF718)
AU28_RS19910	PF00465	Iron-containing alcohol dehydrogenase
AU28_RS19915	PF00596	Class II Aldolase and Adducin N-terminal domain
AU28_RS19920	PF06134	L-rhamnose isomerase (RhaA)
AU28_RS19925	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AU28_RS19925	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AU28_RS19930	PF02311	AraC-like ligand binding domain
AU28_RS19930	PF12833	Helix-turn-helix domain
AU28_RS19935	PF02311	AraC-like ligand binding domain
AU28_RS19935	PF12833	Helix-turn-helix domain
AU28_RS19940	PF06379	AU28_RS19940
AU28_RS19950	PF06178	Oligogalacturonate-specific porin protein (KdgM)
AU28_RS19955	PF06808	AU28_RS19955
AU28_RS19960	PF03480	Bacterial extracellular solute-binding protein, family 7
AU28_RS19965	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AU28_RS19965	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AU28_RS19970	PF03473	MOSC domain
AU28_RS19970	PF03475	3-alpha domain
AU28_RS19975	PF12680	SnoaL-like domain
AU28_RS19985	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS19985	PF00672	HAMP domain
AU28_RS19985	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS19985	PF16527	AU28_RS19985
AU28_RS19990	PF00072	Response regulator receiver domain
AU28_RS19990	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS19995	PF07813	LTXXQ motif family protein
AU28_RS20000	PF01545	Cation efflux family
AU28_RS20000	PF16916	AU28_RS20000
AU28_RS20005	PF00365	Phosphofructokinase
AU28_RS20010	PF13531	Bacterial extracellular solute-binding protein
AU28_RS20015	PF02611	CDP-diacylglycerol pyrophosphatase
AU28_RS20020	PF13347	MFS/sugar transport protein
AU28_RS20025	PF00294	pfkB family carbohydrate kinase
AU28_RS20030	PF03747	ADP-ribosylglycohydrolase
AU28_RS20035	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS20035	PF07702	UTRA domain
AU28_RS20045	PF07883	Cupin domain
AU28_RS20050	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AU28_RS20050	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AU28_RS20055	PF04198	Putative sugar-binding domain
AU28_RS20060	PF00005	ABC transporter
AU28_RS20065	PF02653	AU28_RS20065
AU28_RS20070	PF02653	AU28_RS20070
AU28_RS20075	PF13407	Periplasmic binding protein domain
AU28_RS20080	PF01791	DeoC/LacD family aldolase
AU28_RS20085	PF03992	Antibiotic biosynthesis monooxygenase
AU28_RS20090	PF00834	Ribulose-phosphate 3 epimerase family
AU28_RS20095	PF00121	Triosephosphate isomerase
AU28_RS20100	PF07305	AU28_RS20100
AU28_RS20105	PF05656	AU28_RS20105
AU28_RS20110	PF00175	Oxidoreductase NAD-binding domain
AU28_RS20110	PF00970	Oxidoreductase FAD-binding domain
AU28_RS20115	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
AU28_RS20120	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AU28_RS20120	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AU28_RS20125	PF00230	Major intrinsic protein
AU28_RS20130	PF06005	Protein of unknown function (DUF904)
AU28_RS20135	PF03737	Demethylmenaquinone methyltransferase
AU28_RS20140	PF01040	UbiA prenyltransferase family
AU28_RS20145	PF00004	ATPase family associated with various cellular activities (AAA)
AU28_RS20145	PF07724	AAA domain (Cdc48 subfamily)
AU28_RS20145	PF10431	C-terminal, D2-small domain, of ClpB protein
AU28_RS20150	PF00227	Proteasome subunit
AU28_RS20155	PF05036	Sporulation related domain
AU28_RS20160	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS20160	PF13377	Periplasmic binding protein-like domain
AU28_RS20165	PF00270	DEAD/DEAH box helicase
AU28_RS20165	PF00271	Helicase conserved C-terminal domain
AU28_RS20170	PF01197	Ribosomal protein L31
AU28_RS20175	PF09601	AU28_RS20175
AU28_RS20180	PF05935	Arylsulfotransferase (ASST)
AU28_RS20185	PF01340	Met Apo-repressor, MetJ
AU28_RS20190	PF01053	Cys/Met metabolism PLP-dependent enzyme
AU28_RS20195	PF00696	Amino acid kinase family
AU28_RS20195	PF00742	Homoserine dehydrogenase
AU28_RS20195	PF03447	Homoserine dehydrogenase, NAD binding domain
AU28_RS20200	PF00924	Mechanosensitive ion channel
AU28_RS20200	PF05552	Conserved TM helix
AU28_RS20215	PF00149	Calcineurin-like phosphoesterase
AU28_RS20215	PF02872	5'-nucleotidase, C-terminal domain
AU28_RS20220	PF00464	Serine hydroxymethyltransferase
AU28_RS20225	PF00842	Alanine racemase, C-terminal domain
AU28_RS20225	PF01168	Alanine racemase, N-terminal domain
AU28_RS20230	PF00155	Aminotransferase class I and II
AU28_RS20230	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS20240	PF02219	Methylenetetrahydrofolate reductase
AU28_RS20245	PF00141	Peroxidase
AU28_RS20250	PF06940	AU28_RS20250
AU28_RS20255	PF00465	Iron-containing alcohol dehydrogenase
AU28_RS20260	PF00923	Transaldolase
AU28_RS20265	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AU28_RS20265	PF00381	PTS HPr component phosphorylation site
AU28_RS20265	PF00391	PEP-utilising enzyme, mobile domain
AU28_RS20265	PF02896	PEP-utilising enzyme, TIM barrel domain
AU28_RS20265	PF05524	PEP-utilising enzyme, N-terminal
AU28_RS20275	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AU28_RS20280	PF01228	Glycine radical
AU28_RS20280	PF02901	Pyruvate formate lyase
AU28_RS20285	PF04055	Radical SAM superfamily
AU28_RS20285	PF13353	4Fe-4S single cluster domain
AU28_RS20290	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AU28_RS20295	PF12833	Helix-turn-helix domain
AU28_RS20300	PF00884	Sulfatase
AU28_RS20305	PF00311	Phosphoenolpyruvate carboxylase
AU28_RS20310	PF01546	Peptidase family M20/M25/M40
AU28_RS20310	PF07687	Peptidase dimerisation domain
AU28_RS20315	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AU28_RS20315	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AU28_RS20320	PF00696	Amino acid kinase family
AU28_RS20325	PF00206	Lyase
AU28_RS20325	PF14698	Argininosuccinate lyase C-terminal
AU28_RS20330	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS20330	PF03466	LysR substrate binding domain
AU28_RS20335	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AU28_RS20335	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AU28_RS20340	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS20345	PF07226	AU28_RS20345
AU28_RS20350	PF05958	tRNA (Uracil-5-)-methyltransferase
AU28_RS20355	PF00593	TonB dependent receptor
AU28_RS20355	PF07715	TonB-dependent Receptor Plug Domain
AU28_RS20360	PF01177	Asp/Glu/Hydantoin racemase
AU28_RS20390	PF01565	FAD binding domain
AU28_RS20390	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
AU28_RS20395	PF02237	Biotin protein ligase C terminal domain
AU28_RS20395	PF03099	Biotin/lipoate A/B protein ligase family
AU28_RS20395	PF08279	HTH domain
AU28_RS20400	PF00485	Phosphoribulokinase / Uridine kinase family
AU28_RS20430	PF00009	Elongation factor Tu GTP binding domain
AU28_RS20430	PF03143	Elongation factor Tu C-terminal domain
AU28_RS20430	PF03144	Elongation factor Tu domain 2
AU28_RS20435	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
AU28_RS20440	PF00467	KOW motif
AU28_RS20440	PF02357	Transcription termination factor nusG
AU28_RS20445	PF00298	Ribosomal protein L11, RNA binding domain
AU28_RS20445	PF03946	Ribosomal protein L11, N-terminal domain
AU28_RS20450	PF00687	Ribosomal protein L1p/L10e family
AU28_RS20455	PF00466	Ribosomal protein L10
AU28_RS20460	PF00542	Ribosomal protein L7/L12 C-terminal domain
AU28_RS20460	PF16320	AU28_RS20460
AU28_RS20465	PF00562	RNA polymerase Rpb2, domain 6
AU28_RS20465	PF04560	RNA polymerase Rpb2, domain 7
AU28_RS20465	PF04561	RNA polymerase Rpb2, domain 2
AU28_RS20465	PF04563	RNA polymerase beta subunit
AU28_RS20465	PF04565	RNA polymerase Rpb2, domain 3
AU28_RS20465	PF10385	RNA polymerase beta subunit external 1 domain
AU28_RS20470	PF00623	RNA polymerase Rpb1, domain 2
AU28_RS20470	PF04983	RNA polymerase Rpb1, domain 3
AU28_RS20470	PF04997	RNA polymerase Rpb1, domain 1
AU28_RS20470	PF04998	RNA polymerase Rpb1, domain 5
AU28_RS20470	PF05000	RNA polymerase Rpb1, domain 4
AU28_RS20495	PF04055	Radical SAM superfamily
AU28_RS20495	PF06968	Biotin and Thiamin Synthesis associated domain
AU28_RS20500	PF05690	Thiazole biosynthesis protein ThiG
AU28_RS20505	PF02597	ThiS family
AU28_RS20510	PF00899	ThiF family
AU28_RS20515	PF02581	Thiamine monophosphate synthase/TENI
AU28_RS20520	PF01964	ThiC family
AU28_RS20520	PF13667	ThiC-associated domain
AU28_RS20525	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
AU28_RS20530	PF00293	NUDIX domain
AU28_RS20530	PF09297	NADH pyrophosphatase zinc ribbon domain
AU28_RS20535	PF01208	Uroporphyrinogen decarboxylase (URO-D)
AU28_RS20540	PF04493	Endonuclease V
AU28_RS20545	PF04222	Protein of unknown function (DUF416)
AU28_RS20550	PF00216	Bacterial DNA-binding protein
AU28_RS20555	PF07356	AU28_RS20555
AU28_RS20560	PF13801	Heavy-metal resistance
AU28_RS20565	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS20565	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS20570	PF00072	Response regulator receiver domain
AU28_RS20570	PF00158	Sigma-54 interaction domain
AU28_RS20570	PF02954	Bacterial regulatory protein, Fis family
AU28_RS20575	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
AU28_RS20575	PF02843	Phosphoribosylglycinamide synthetase, C domain
AU28_RS20575	PF02844	Phosphoribosylglycinamide synthetase, N domain
AU28_RS20580	PF01808	AICARFT/IMPCHase bienzyme
AU28_RS20580	PF02142	MGS-like domain
AU28_RS20605	PF13673	Acetyltransferase (GNAT) domain
AU28_RS20610	PF04204	Homoserine O-succinyltransferase
AU28_RS20615	PF01274	Malate synthase
AU28_RS20620	PF00463	Isocitrate lyase family
AU28_RS20625	PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
AU28_RS20630	PF04266	ASCH domain
AU28_RS20635	PF01614	Bacterial transcriptional regulator
AU28_RS20635	PF09339	IclR helix-turn-helix domain
AU28_RS20640	PF00809	Pterin binding enzyme
AU28_RS20640	PF02310	B12 binding domain
AU28_RS20640	PF02574	Homocysteine S-methyltransferase
AU28_RS20640	PF02607	B12 binding domain
AU28_RS20640	PF02965	Vitamin B12 dependent methionine synthase, activation domain
AU28_RS20645	PF02690	AU28_RS20645
AU28_RS20650	PF03575	Peptidase family S51
AU28_RS20660	PF09831	AU28_RS20660
AU28_RS20665	PF00849	RNA pseudouridylate synthase
AU28_RS20665	PF01479	S4 domain
AU28_RS20670	PF11656	AU28_RS20670
AU28_RS20675	PF00455	AU28_RS20675
AU28_RS20675	PF08220	DeoR-like helix-turn-helix domain
AU28_RS20680	PF08282	haloacid dehalogenase-like hydrolase
AU28_RS20700	PF14602	Hexapeptide repeat of succinyl-transferase
AU28_RS20710	PF08765	Mor transcription activator family
AU28_RS20715	PF00696	Amino acid kinase family
AU28_RS20715	PF01842	ACT domain
AU28_RS20720	PF00342	Phosphoglucose isomerase
AU28_RS20725	PF11106	AU28_RS20725
AU28_RS20730	PF11102	Group 4 capsule polysaccharide formation lipoprotein gfcB
AU28_RS20735	PF06251	Capsule biosynthesis GfcC
AU28_RS20740	PF06082	AU28_RS20740
AU28_RS20745	PF06146	AU28_RS20745
AU28_RS20750	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS20755	PF00528	Binding-protein-dependent transport system inner membrane component
AU28_RS20755	PF14785	Maltose transport system permease protein MalF P2 domain
AU28_RS20760	PF13416	Bacterial extracellular solute-binding protein
AU28_RS20765	PF00005	ABC transporter
AU28_RS20765	PF08402	TOBE domain
AU28_RS20770	PF02264	LamB porin
AU28_RS20775	PF07148	AU28_RS20775
AU28_RS20780	PF04345	Chorismate lyase
AU28_RS20785	PF01040	UbiA prenyltransferase family
AU28_RS20790	PF01553	Acyltransferase
AU28_RS20795	PF01219	Prokaryotic diacylglycerol kinase
AU28_RS20800	PF00717	Peptidase S24-like
AU28_RS20800	PF01726	LexA DNA binding domain
AU28_RS20805	PF01554	MatE
AU28_RS20815	PF05532	CsbD-like
AU28_RS20820	PF01475	Ferric uptake regulator family
AU28_RS20825	PF13729	AU28_RS20825
AU28_RS20830	PF01207	Dihydrouridine synthase (Dus)
AU28_RS20835	PF09583	AU28_RS20835
AU28_RS20840	PF00107	Zinc-binding dehydrogenase
AU28_RS20840	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS20845	PF00772	DnaB-like helicase N terminal domain
AU28_RS20845	PF03796	DnaB-like helicase C terminal domain
AU28_RS20850	PF00842	Alanine racemase, C-terminal domain
AU28_RS20850	PF01168	Alanine racemase, N-terminal domain
AU28_RS20855	PF00155	Aminotransferase class I and II
AU28_RS20860	PF03767	HAD superfamily, subfamily IIIB (Acid phosphatase)
AU28_RS20865	PF01894	Uncharacterised protein family UPF0047
AU28_RS20870	PF04237	YjbR
AU28_RS20885	PF00005	ABC transporter
AU28_RS20895	PF00436	Single-strand binding protein family
AU28_RS20905	PF01618	AU28_RS20905
AU28_RS20910	PF02321	Outer membrane efflux protein
AU28_RS20915	PF13437	HlyD family secretion protein
AU28_RS20920	PF12245	Bacterial Ig-like domain (group 3)
AU28_RS20920	PF13750	AU28_RS20920
AU28_RS20925	PF00005	ABC transporter
AU28_RS20925	PF00664	ABC transporter transmembrane region
AU28_RS20930	PF15940	AU28_RS20930
AU28_RS20935	PF00563	EAL domain
AU28_RS20935	PF12792	AU28_RS20935
AU28_RS20940	PF12833	Helix-turn-helix domain
AU28_RS20945	PF00376	MerR family regulatory protein
AU28_RS20945	PF09278	MerR, DNA binding
AU28_RS20950	PF00043	Glutathione S-transferase, C-terminal domain
AU28_RS20950	PF02798	Glutathione S-transferase, N-terminal domain
AU28_RS20955	PF00860	Permease family
AU28_RS20960	PF00999	Sodium/hydrogen exchanger family
AU28_RS20965	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS20965	PF03466	LysR substrate binding domain
AU28_RS20970	PF03788	AU28_RS20970
AU28_RS20975	PF04172	AU28_RS20975
AU28_RS20980	PF00474	Sodium:solute symporter family
AU28_RS20985	PF04341	AU28_RS20985
AU28_RS20990	PF00501	AMP-binding enzyme
AU28_RS20990	PF13193	AMP-binding enzyme C-terminal domain
AU28_RS20990	PF16177	AU28_RS20990
AU28_RS21000	PF02335	Cytochrome c552
AU28_RS21005	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)
AU28_RS21010	PF00037	4Fe-4S binding domain
AU28_RS21010	PF13247	4Fe-4S dicluster domain
AU28_RS21015	PF03916	AU28_RS21015
AU28_RS21020	PF01578	AU28_RS21020
AU28_RS21020	PF16327	AU28_RS21020
AU28_RS21025	PF03918	Cytochrome C biogenesis protein
AU28_RS21025	PF15954	AU28_RS21025
AU28_RS21035	PF00375	Sodium:dicarboxylate symporter family
AU28_RS21040	PF08238	Sel1 repeat
AU28_RS21045	PF00384	Molybdopterin oxidoreductase
AU28_RS21045	PF01568	Molydopterin dinucleotide binding domain
AU28_RS21050	PF00384	Molybdopterin oxidoreductase
AU28_RS21050	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AU28_RS21055	PF05118	Aspartyl/Asparaginyl beta-hydroxylase
AU28_RS21060	PF00583	Acetyltransferase (GNAT) family
AU28_RS21065	PF06983	3-demethylubiquinone-9 3-methyltransferase
AU28_RS21070	PF03831	PhnA protein
AU28_RS21070	PF08274	PhnA Zinc-Ribbon
AU28_RS21075	PF00083	Sugar (and other) transporter
AU28_RS21075	PF08946	Osmosensory transporter coiled coil
AU28_RS21085	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS21085	PF00672	HAMP domain
AU28_RS21085	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS21090	PF00072	Response regulator receiver domain
AU28_RS21090	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS21095	PF00884	Sulfatase
AU28_RS21095	PF08019	AU28_RS21095
AU28_RS21100	PF13520	Amino acid permease
AU28_RS21105	PF12833	Helix-turn-helix domain
AU28_RS21115	PF01276	Orn/Lys/Arg decarboxylase, major domain
AU28_RS21115	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AU28_RS21115	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AU28_RS21120	PF12833	Helix-turn-helix domain
AU28_RS21125	PF02056	Family 4 glycosyl hydrolase
AU28_RS21125	PF11975	Family 4 glycosyl hydrolase C-terminal domain
AU28_RS21130	PF13347	MFS/sugar transport protein
AU28_RS21135	PF05681	AU28_RS21135
AU28_RS21135	PF05683	Fumarase C-terminus
AU28_RS21140	PF03605	AU28_RS21140
AU28_RS21150	PF00072	Response regulator receiver domain
AU28_RS21155	PF00989	PAS fold
AU28_RS21155	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS21155	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AU28_RS21155	PF17203	AU28_RS21155
AU28_RS21160	PF00384	Molybdopterin oxidoreductase
AU28_RS21160	PF01568	Molydopterin dinucleotide binding domain
AU28_RS21165	PF13247	4Fe-4S dicluster domain
AU28_RS21170	PF04976	AU28_RS21170
AU28_RS21175	PF02613	Nitrate reductase delta subunit
AU28_RS21180	PF09362	AU28_RS21180
AU28_RS21185	PF06977	SdiA-regulated
AU28_RS21195	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS21200	PF12833	Helix-turn-helix domain
AU28_RS21210	PF08681	Protein of unknown function (DUF1778)
AU28_RS21215	PF13508	Acetyltransferase (GNAT) domain
AU28_RS21220	PF01569	PAP2 superfamily
AU28_RS21235	PF00440	Bacterial regulatory proteins, tetR family
AU28_RS21240	PF02683	AU28_RS21240
AU28_RS21240	PF11412	Disulphide bond corrector protein DsbC
AU28_RS21240	PF13899	Thioredoxin-like
AU28_RS21245	PF03091	CutA1 divalent ion tolerance protein
AU28_RS21250	PF03605	AU28_RS21250
AU28_RS21255	PF00206	Lyase
AU28_RS21255	PF10415	Fumarase C C-terminus
AU28_RS21265	PF04186	AU28_RS21265
AU28_RS21270	PF13520	Amino acid permease
AU28_RS21275	PF00166	Chaperonin 10 Kd subunit
AU28_RS21280	PF00118	TCP-1/cpn60 chaperonin family
AU28_RS21285	PF13698	AU28_RS21285
AU28_RS21290	PF15922	AU28_RS21290
AU28_RS21295	PF04055	Radical SAM superfamily
AU28_RS21295	PF13353	4Fe-4S single cluster domain
AU28_RS21300	PF01132	Elongation factor P (EF-P) OB domain
AU28_RS21300	PF08207	Elongation factor P (EF-P) KOW-like domain
AU28_RS21300	PF09285	Elongation factor P, C-terminal
AU28_RS21305	PF08085	AU28_RS21305
AU28_RS21310	PF08085	AU28_RS21310
AU28_RS21315	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS21320	PF00893	Small Multidrug Resistance protein
AU28_RS21325	PF08212	Lipocalin-like domain
AU28_RS21330	PF02313	Fumarate reductase subunit D
AU28_RS21335	PF02300	Fumarate reductase subunit C
AU28_RS21340	PF13085	2Fe-2S iron-sulfur cluster binding domain
AU28_RS21340	PF13183	4Fe-4S dicluster domain
AU28_RS21345	PF00890	FAD binding domain
AU28_RS21345	PF02910	Fumarate reductase flavoprotein C-term
AU28_RS21350	PF00152	tRNA synthetases class II (D, K and N)
AU28_RS21355	PF13520	Amino acid permease
AU28_RS21360	PF10840	AU28_RS21360
AU28_RS21365	PF00924	Mechanosensitive ion channel
AU28_RS21365	PF12794	AU28_RS21365
AU28_RS21365	PF12795	AU28_RS21365
AU28_RS21370	PF02666	AU28_RS21370
AU28_RS21375	PF03193	Protein of unknown function, DUF258
AU28_RS21380	PF00929	Exonuclease
AU28_RS21385	PF00497	Bacterial extracellular solute-binding proteins, family 3
AU28_RS21405	PF08331	AU28_RS21405
AU28_RS21405	PF13484	AU28_RS21405
AU28_RS21410	PF01256	Carbohydrate kinase
AU28_RS21410	PF03853	YjeF-related protein N-terminus
AU28_RS21415	PF02367	Uncharacterised P-loop hydrolase UPF0079
AU28_RS21420	PF01520	N-acetylmuramoyl-L-alanine amidase
AU28_RS21425	PF01119	DNA mismatch repair protein, C-terminal domain
AU28_RS21425	PF08676	MutL C terminal dimerisation domain
AU28_RS21425	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS21430	PF01715	IPP transferase
AU28_RS21440	PF01926	50S ribosome-binding GTPase
AU28_RS21440	PF13167	AU28_RS21440
AU28_RS21440	PF16360	AU28_RS21440
AU28_RS21445	PF01145	SPFH domain / Band 7 family
AU28_RS21445	PF12221	AU28_RS21445
AU28_RS21450	PF01145	SPFH domain / Band 7 family
AU28_RS21455	PF09838	AU28_RS21455
AU28_RS21460	PF00709	Adenylosuccinate synthetase
AU28_RS21465	PF02082	Transcriptional regulator
AU28_RS21470	PF00575	S1 RNA binding domain
AU28_RS21470	PF00773	RNB domain
AU28_RS21470	PF08206	Ribonuclease B OB domain
AU28_RS21470	PF08461	Ribonuclease R winged-helix domain
AU28_RS21475	PF00588	SpoU rRNA Methylase family
AU28_RS21475	PF08032	RNA 2'-O ribose methyltransferase substrate binding
AU28_RS21480	PF09938	AU28_RS21480
AU28_RS21485	PF04012	AU28_RS21485
AU28_RS21490	PF07885	Ion channel
AU28_RS21495	PF10679	AU28_RS21495
AU28_RS21500	PF03994	AU28_RS21500
AU28_RS21505	PF06693	AU28_RS21505
AU28_RS21510	PF03738	Glutathionylspermidine synthase preATP-grasp
AU28_RS21515	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AU28_RS21515	PF02770	Acyl-CoA dehydrogenase, middle domain
AU28_RS21520	PF07338	Protein of unknown function (DUF1471)
AU28_RS21525	PF07338	Protein of unknown function (DUF1471)
AU28_RS21530	PF00326	Prolyl oligopeptidase family
AU28_RS21535	PF00455	AU28_RS21535
AU28_RS21535	PF08220	DeoR-like helix-turn-helix domain
AU28_RS21540	PF13483	Beta-lactamase superfamily domain
AU28_RS21545	PF03611	AU28_RS21545
AU28_RS21550	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AU28_RS21555	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AU28_RS21560	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AU28_RS21565	PF01261	Xylose isomerase-like TIM barrel
AU28_RS21570	PF00596	Class II Aldolase and Adducin N-terminal domain
AU28_RS21575	PF07338	Protein of unknown function (DUF1471)
AU28_RS21585	PF01250	Ribosomal protein S6
AU28_RS21590	PF00436	Single-strand binding protein family
AU28_RS21595	PF01084	Ribosomal protein S18
AU28_RS21600	PF01281	Ribosomal protein L9, N-terminal domain
AU28_RS21600	PF03948	Ribosomal protein L9, C-terminal domain
AU28_RS21605	PF00892	EamA-like transporter family
AU28_RS21610	PF04225	Opacity-associated protein A LysM-like domain
AU28_RS21610	PF08525	AU28_RS21610
AU28_RS21615	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AU28_RS21615	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AU28_RS21620	PF00324	Amino acid permease
AU28_RS21625	PF13644	AU28_RS21625
AU28_RS21635	PF01814	Hemerythrin HHE cation binding domain
AU28_RS21635	PF04405	AU28_RS21635
AU28_RS21640	PF00892	EamA-like transporter family
AU28_RS21645	PF05368	NmrA-like family
AU28_RS21650	PF01638	HxlR-like helix-turn-helix
AU28_RS21655	PF00149	Calcineurin-like phosphoesterase
AU28_RS21655	PF02872	5'-nucleotidase, C-terminal domain
AU28_RS21660	PF00459	Inositol monophosphatase family
AU28_RS21665	PF09695	AU28_RS21665
AU28_RS21670	PF06526	Protein of unknown function (DUF1107)
AU28_RS21675	PF00571	CBS domain
AU28_RS21675	PF01595	AU28_RS21675
AU28_RS21675	PF03471	Transporter associated domain
AU28_RS21680	PF01625	Peptide methionine sulfoxide reductase
AU28_RS21685	PF01103	Surface antigen
AU28_RS21685	PF07244	Surface antigen variable number repeat
AU28_RS21690	PF04357	AU28_RS21690
AU28_RS21695	PF06094	AIG2-like family
AU28_RS21700	PF07690	Major Facilitator Superfamily
AU28_RS21705	PF01979	Amidohydrolase family
AU28_RS21710	PF00719	Inorganic pyrophosphatase
AU28_RS21715	PF00316	Fructose-1-6-bisphosphatase
AU28_RS21720	PF01225	Mur ligase family, catalytic domain
AU28_RS21720	PF02875	Mur ligase family, glutamate ligase domain
AU28_RS21720	PF08245	Mur ligase middle domain
AU28_RS21725	PF04751	Protein of unknown function (DUF615)
AU28_RS21730	PF01523	Putative modulator of DNA gyrase
AU28_RS21735	PF07361	Cytochrome b562
AU28_RS21745	PF14272	AU28_RS21745
AU28_RS21750	PF14189	AU28_RS21750
AU28_RS21755	PF14188	AU28_RS21755
AU28_RS21760	PF14187	AU28_RS21760
AU28_RS21765	PF01979	Amidohydrolase family
AU28_RS21770	PF03841	L-seryl-tRNA selenium transferase
AU28_RS21775	PF07071	Protein of unknown function (DUF1341)
AU28_RS21780	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AU28_RS21780	PF00874	PRD domain
AU28_RS21780	PF05043	Mga helix-turn-helix domain
AU28_RS21780	PF08279	HTH domain
AU28_RS21785	PF04221	RelB antitoxin
AU28_RS21790	PF05016	Plasmid stabilisation system protein
AU28_RS21795	PF13353	4Fe-4S single cluster domain
AU28_RS21800	PF03477	ATP cone domain
AU28_RS21800	PF13597	Anaerobic ribonucleoside-triphosphate reductase
AU28_RS21810	PF00128	Alpha amylase, catalytic domain
AU28_RS21810	PF11941	Domain of unknown function (DUF3459)
AU28_RS21815	PF00367	phosphotransferase system, EIIB
AU28_RS21815	PF02378	Phosphotransferase system, EIIC
AU28_RS21820	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS21820	PF13377	Periplasmic binding protein-like domain
AU28_RS21825	PF00122	E1-E2 ATPase
AU28_RS21825	PF00689	Cation transporting ATPase, C-terminus
AU28_RS21825	PF00690	Cation transporter/ATPase, N-terminus
AU28_RS21825	PF00702	haloacid dehalogenase-like hydrolase
AU28_RS21830	PF01527	Transposase
AU28_RS21835	PF01042	Endoribonuclease L-PSP
AU28_RS21840	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
AU28_RS21840	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
AU28_RS21845	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AU28_RS21845	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AU28_RS21850	PF08052	AU28_RS21850
AU28_RS21855	PF01316	Arginine repressor, DNA binding domain
AU28_RS21855	PF02863	Arginine repressor, C-terminal domain
AU28_RS21860	PF03606	AU28_RS21860
AU28_RS21865	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AU28_RS21865	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AU28_RS21870	PF00696	Amino acid kinase family
AU28_RS21875	PF02274	Amidinotransferase
AU28_RS21880	PF04074	Domain of unknown function (DUF386)
AU28_RS21885	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AU28_RS21885	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AU28_RS21890	PF06877	Regulator of ribonuclease activity B
AU28_RS21895	PF06175	tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
AU28_RS21900	PF12276	AU28_RS21900
AU28_RS21905	PF12276	AU28_RS21905
AU28_RS21910	PF00583	Acetyltransferase (GNAT) family
AU28_RS21915	PF05987	AU28_RS21915
AU28_RS21920	PF00133	tRNA synthetases class I (I, L, M and V)
AU28_RS21920	PF08264	Anticodon-binding domain of tRNA
AU28_RS21920	PF10458	Valyl tRNA synthetase tRNA binding arm
AU28_RS21925	PF04364	DNA polymerase III chi subunit, HolC
AU28_RS21930	PF00883	Cytosol aminopeptidase family, catalytic domain
AU28_RS21930	PF02789	Cytosol aminopeptidase family, N-terminal domain
AU28_RS21940	PF03739	AU28_RS21940
AU28_RS21945	PF03739	AU28_RS21945
AU28_RS21950	PF00356	Bacterial regulatory proteins, lacI family
AU28_RS21950	PF13377	Periplasmic binding protein-like domain
AU28_RS21955	PF02447	AU28_RS21955
AU28_RS21960	PF00106	short chain dehydrogenase
AU28_RS21965	PF00107	Zinc-binding dehydrogenase
AU28_RS21965	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS21970	PF01202	Shikimate kinase
AU28_RS21975	PF00107	Zinc-binding dehydrogenase
AU28_RS21975	PF08240	Alcohol dehydrogenase GroES-like domain
AU28_RS21985	PF13565	AU28_RS21985
AU28_RS21985	PF13708	AU28_RS21985
AU28_RS21990	PF01402	Ribbon-helix-helix protein, copG family
AU28_RS21995	PF07362	Post-segregation antitoxin CcdA
AU28_RS22000	PF01845	CcdB protein
AU28_RS22005	PF13333	AU28_RS22005
AU28_RS22010	PF13276	AU28_RS22010
AU28_RS22015	PF06443	AU28_RS22015
AU28_RS22020	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS22025	PF00577	Outer membrane usher protein
AU28_RS22025	PF13953	PapC C-terminal domain
AU28_RS22025	PF13954	PapC N-terminal domain
AU28_RS22030	PF05775	Enterobacteria AfaD invasin protein
AU28_RS22035	PF12833	Helix-turn-helix domain
AU28_RS22040	PF04703	FaeA-like protein
AU28_RS22045	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS22055	PF01323	DSBA-like thioredoxin domain
AU28_RS22060	PF06977	SdiA-regulated
AU28_RS22065	PF01527	Transposase
AU28_RS22075	PF00665	Integrase core domain
AU28_RS22085	PF01709	Transcriptional regulator
AU28_RS22090	PF13649	Methyltransferase domain
AU28_RS22090	PF13847	Methyltransferase domain
AU28_RS22095	PF09857	AU28_RS22095
AU28_RS22105	PF06353	AU28_RS22105
AU28_RS22115	PF03625	Domain of unknown function DUF302
AU28_RS22120	PF01738	Dienelactone hydrolase family
AU28_RS22125	PF00392	Bacterial regulatory proteins, gntR family
AU28_RS22125	PF07729	FCD domain
AU28_RS22130	PF00579	tRNA synthetases class I (W and Y)
AU28_RS22140	PF05638	Protein of unknown function (DUF796)
AU28_RS22145	PF01177	Asp/Glu/Hydantoin racemase
AU28_RS22150	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AU28_RS22150	PF03466	LysR substrate binding domain
AU28_RS22155	PF01979	Amidohydrolase family
AU28_RS22155	PF07969	Amidohydrolase family
AU28_RS22160	PF07670	Nucleoside recognition
AU28_RS22165	PF07670	Nucleoside recognition
AU28_RS22175	PF06779	AU28_RS22175
AU28_RS22180	PF04286	AU28_RS22180
AU28_RS22185	PF07690	Major Facilitator Superfamily
AU28_RS22190	PF04754	AU28_RS22190
AU28_RS22195	PF00171	Aldehyde dehydrogenase family
AU28_RS22205	PF06568	AU28_RS22205
AU28_RS22210	PF01939	Protein of unknown function DUF91
AU28_RS22215	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
AU28_RS22215	PF04851	Type III restriction enzyme, res subunit
AU28_RS22215	PF11867	AU28_RS22215
AU28_RS22220	PF01420	Type I restriction modification DNA specificity domain
AU28_RS22225	PF02384	N-6 DNA Methylase
AU28_RS22225	PF12161	HsdM N-terminal domain
AU28_RS22230	PF04471	Restriction endonuclease
AU28_RS22235	PF04471	Restriction endonuclease
AU28_RS22245	PF02384	N-6 DNA Methylase
AU28_RS22250	PF01420	Type I restriction modification DNA specificity domain
AU28_RS22260	PF08378	AU28_RS22260
AU28_RS22260	PF13245	Part of AAA domain
AU28_RS22260	PF13361	UvrD-like helicase C-terminal domain
AU28_RS22265	PF04365	Protein of unknown function (DUF497)
AU28_RS22270	PF14384	AU28_RS22270
AU28_RS22275	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AU28_RS22275	PF07683	Cobalamin synthesis protein cobW C-terminal domain
AU28_RS22280	PF04328	AU28_RS22280
AU28_RS22285	PF02554	AU28_RS22285
AU28_RS22285	PF13722	AU28_RS22285
AU28_RS22290	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AU28_RS22290	PF00672	HAMP domain
AU28_RS22290	PF02203	Tar ligand binding domain homologue
AU28_RS22295	PF00158	Sigma-54 interaction domain
AU28_RS22295	PF00874	PRD domain
AU28_RS22295	PF03610	PTS system fructose IIA component
AU28_RS22300	PF03610	PTS system fructose IIA component
AU28_RS22305	PF03830	PTS system sorbose subfamily IIB component
AU28_RS22310	PF03609	AU28_RS22310
AU28_RS22315	PF03613	AU28_RS22315
AU28_RS22320	PF01380	SIS domain
AU28_RS22325	PF01380	SIS domain
AU28_RS22330	PF00884	Sulfatase
AU28_RS22335	PF10696	AU28_RS22335
AU28_RS22340	PF01695	IstB-like ATP binding protein
AU28_RS22350	PF12821	AU28_RS22350
AU28_RS22355	PF06738	AU28_RS22355
AU28_RS22360	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS22365	PF00196	Bacterial regulatory proteins, luxR family
AU28_RS22370	PF04073	Aminoacyl-tRNA editing domain
AU28_RS22375	PF06276	Ferric iron reductase FhuF-like transporter
AU28_RS22375	PF11575	AU28_RS22375
AU28_RS22380	PF00990	GGDEF domain
AU28_RS22385	PF07256	AU28_RS22385
AU28_RS22405	PF05175	Methyltransferase small domain
AU28_RS22405	PF08468	Methyltransferase small domain N-terminal
AU28_RS22410	PF03603	DNA polymerase III psi subunit
AU28_RS22415	PF00583	Acetyltransferase (GNAT) family
AU28_RS22420	PF13419	Haloacid dehalogenase-like hydrolase
AU28_RS22425	PF00009	Elongation factor Tu GTP binding domain
AU28_RS22425	PF03144	Elongation factor Tu domain 2
AU28_RS22425	PF16658	AU28_RS22425
AU28_RS22430	PF04972	BON domain
AU28_RS22435	PF07043	AU28_RS22435
AU28_RS22440	PF01734	Patatin-like phospholipase
AU28_RS22445	PF01026	TatD related DNase
AU28_RS22450	PF04055	Radical SAM superfamily
AU28_RS22450	PF13353	4Fe-4S single cluster domain
AU28_RS22455	PF11230	AU28_RS22455
AU28_RS22460	PF01791	DeoC/LacD family aldolase
AU28_RS22465	PF00591	Glycosyl transferase family, a/b domain
AU28_RS22465	PF02885	Glycosyl transferase family, helical bundle domain
AU28_RS22465	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
AU28_RS22470	PF01676	Metalloenzyme superfamily
AU28_RS22475	PF01048	Phosphorylase superfamily
AU28_RS22480	PF07804	HipA-like C-terminal domain
AU28_RS22480	PF07805	HipA-like N-terminal domain
AU28_RS22485	PF03099	Biotin/lipoate A/B protein ligase family
AU28_RS22485	PF10437	Bacterial lipoate protein ligase C-terminus
AU28_RS22490	PF10144	AU28_RS22490
AU28_RS22495	PF12710	haloacid dehalogenase-like hydrolase
AU28_RS22500	PF13481	AAA domain
AU28_RS22500	PF13541	Subunit ChlI of Mg-chelatase
AU28_RS22505	PF01381	Helix-turn-helix
AU28_RS22505	PF13521	AAA domain
AU28_RS22510	PF00005	ABC transporter
AU28_RS22510	PF12848	ABC transporter
AU28_RS22515	PF01464	Transglycosylase SLT domain
AU28_RS22515	PF14718	Soluble lytic murein transglycosylase L domain
AU28_RS22520	PF01371	Trp repressor protein
AU28_RS22525	PF01931	Protein of unknown function DUF84
AU28_RS22530	PF00300	Histidine phosphatase superfamily (branch 1)
AU28_RS22535	PF06445	GyrI-like small molecule binding domain
AU28_RS22535	PF12833	Helix-turn-helix domain
AU28_RS22540	PF05981	AU28_RS22540
AU28_RS22545	PF00072	Response regulator receiver domain
AU28_RS22545	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS22550	PF00512	His Kinase A (phospho-acceptor) domain
AU28_RS22550	PF00672	HAMP domain
AU28_RS22550	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AU28_RS22550	PF17203	AU28_RS22550
AU28_RS22555	PF06123	AU28_RS22555
AU28_RS22560	PF00419	Fimbrial protein
AU28_RS22565	PF00419	Fimbrial protein
AU28_RS22570	PF00577	Outer membrane usher protein
AU28_RS22570	PF13953	PapC C-terminal domain
AU28_RS22570	PF13954	PapC N-terminal domain
AU28_RS22575	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AU28_RS22575	PF02753	Pili assembly chaperone PapD, C-terminal domain
AU28_RS22580	PF00419	Fimbrial protein
AU28_RS22585	PF15977	AU28_RS22585
AU28_RS22595	PF00072	Response regulator receiver domain
AU28_RS22595	PF00486	Transcriptional regulatory protein, C terminal
AU28_RS22605	PF00588	SpoU rRNA Methylase family
AU28_RS22610	PF08254	AU28_RS22610
AU28_RS22615	PF00696	Amino acid kinase family
AU28_RS22615	PF00742	Homoserine dehydrogenase
AU28_RS22615	PF03447	Homoserine dehydrogenase, NAD binding domain
AU28_RS22615	PF13840	ACT domain
AU28_RS22620	PF00288	GHMP kinases N terminal domain
AU28_RS22620	PF08544	GHMP kinases C terminal