locus-tag class description CJD41_RS00005 PF11638 DnaA N-terminal domain CJD41_RS00005 PF00308 Bacterial dnaA protein CJD41_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CJD41_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CJD41_RS00010 PF02767 DNA polymerase III beta subunit, central domain CJD41_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CJD41_RS00015 PF02463 RecF/RecN/SMC N terminal domain CJD41_RS00020 PF18053 DNA gyrase B subunit insert domain CJD41_RS00020 PF01751 Toprim domain CJD41_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus CJD41_RS00020 PF00204 DNA gyrase B CJD41_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS00025 PF03466 LysR substrate binding domain CJD41_RS00025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS00030 PF13378 Enolase C-terminal domain-like CJD41_RS00030 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJD41_RS00045 PF07729 FCD domain CJD41_RS00045 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS00050 PF05035 2-keto-3-deoxy-galactonokinase CJD41_RS00055 PF01081 KDPG and KHG aldolase CJD41_RS00060 PF13378 Enolase C-terminal domain-like CJD41_RS00060 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJD41_RS00065 PF07690 Major Facilitator Superfamily CJD41_RS00075 PF01568 Molydopterin dinucleotide binding domain CJD41_RS00075 PF18364 Molybdopterin oxidoreductase N-terminal domain CJD41_RS00075 PF00384 Molybdopterin oxidoreductase CJD41_RS00080 PF02613 Nitrate reductase delta subunit CJD41_RS00085 PF03150 Di-haem cytochrome c peroxidase CJD41_RS00085 PF00034 Cytochrome c CJD41_RS00085 PF14376 Haem-binding domain CJD41_RS00090 PF00005 ABC transporter CJD41_RS00095 PF03379 CcmB protein CJD41_RS00100 PF01578 Cytochrome C assembly protein CJD41_RS00105 PF04995 Heme exporter protein D (CcmD) CJD41_RS00110 PF03100 CcmE CJD41_RS00115 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CJD41_RS00115 PF01578 Cytochrome C assembly protein CJD41_RS00120 PF08534 Redoxin CJD41_RS00125 PF03918 Cytochrome C biogenesis protein CJD41_RS00130 PF07676 WD40-like Beta Propeller Repeat CJD41_RS00130 PF12566 Protein of unknown function (DUF3748) CJD41_RS00135 PF07119 Protein of unknown function (DUF1375) CJD41_RS00140 PF00011 Hsp20/alpha crystallin family CJD41_RS00145 PF00011 Hsp20/alpha crystallin family CJD41_RS00150 PF06826 Predicted Permease Membrane Region CJD41_RS00150 PF02080 TrkA-C domain CJD41_RS00155 PF02656 Domain of unknown function (DUF202) CJD41_RS00160 PF02656 Domain of unknown function (DUF202) CJD41_RS00170 PF00291 Pyridoxal-phosphate dependent enzyme CJD41_RS00175 PF02447 GntP family permease CJD41_RS00180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS00180 PF03466 LysR substrate binding domain CJD41_RS00190 PF07690 Major Facilitator Superfamily CJD41_RS00200 PF13939 Toxin TisB, type I toxin-antitoxin system CJD41_RS00215 PF08049 IlvB leader peptide CJD41_RS00220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJD41_RS00220 PF00205 Thiamine pyrophosphate enzyme, central domain CJD41_RS00220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJD41_RS00225 PF01842 ACT domain CJD41_RS00230 PF08220 DeoR-like helix-turn-helix domain CJD41_RS00230 PF00455 DeoR C terminal sensor domain CJD41_RS00235 PF00294 pfkB family carbohydrate kinase CJD41_RS00240 PF07690 Major Facilitator Superfamily CJD41_RS00250 PF00072 Response regulator receiver domain CJD41_RS00250 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS00255 PF05231 MASE1 CJD41_RS00255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS00255 PF07730 Histidine kinase CJD41_RS00260 PF07690 Major Facilitator Superfamily CJD41_RS00265 PF07690 Major Facilitator Superfamily CJD41_RS00270 PF06711 Protein of unknown function (DUF1198) CJD41_RS00285 PF07690 Major Facilitator Superfamily CJD41_RS00290 PF00232 Glycosyl hydrolase family 1 CJD41_RS00300 PF00158 Sigma-54 interaction domain CJD41_RS00300 PF00874 PRD domain CJD41_RS00310 PF03610 PTS system fructose IIA component CJD41_RS00310 PF03830 PTS system sorbose subfamily IIB component CJD41_RS00315 PF03609 PTS system sorbose-specific iic component CJD41_RS00320 PF03613 PTS system mannose/fructose/sorbose family IID component CJD41_RS00325 PF03841 L-seryl-tRNA selenium transferase CJD41_RS00330 PF07071 KDGP aldolase CJD41_RS00335 PF04754 Putative transposase, YhgA-like CJD41_RS00340 PF00892 EamA-like transporter family CJD41_RS00345 PF02308 MgtC family CJD41_RS00350 PF00689 Cation transporting ATPase, C-terminus CJD41_RS00350 PF00690 Cation transporter/ATPase, N-terminus CJD41_RS00365 PF00857 Isochorismatase family CJD41_RS00375 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS00385 PF03797 Autotransporter beta-domain CJD41_RS00390 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS00440 PF13802 Galactose mutarotase-like CJD41_RS00440 PF01055 Glycosyl hydrolases family 31 CJD41_RS00445 PF05170 AsmA family CJD41_RS00450 PF00860 Permease family CJD41_RS00455 PF03616 Sodium/glutamate symporter CJD41_RS00460 PF00270 DEAD/DEAH box helicase CJD41_RS00460 PF00271 Helicase conserved C-terminal domain CJD41_RS00460 PF17191 RecG wedge domain CJD41_RS00465 PF00588 SpoU rRNA Methylase family CJD41_RS00465 PF12105 SpoU, rRNA methylase, C-terminal CJD41_RS00470 PF13291 ACT domain CJD41_RS00470 PF04607 Region found in RelA / SpoT proteins CJD41_RS00470 PF02824 TGS domain CJD41_RS00475 PF01192 RNA polymerase Rpb6 CJD41_RS00480 PF00625 Guanylate kinase CJD41_RS00485 PF03120 NAD-dependent DNA ligase OB-fold domain CJD41_RS00485 PF01653 NAD-dependent DNA ligase adenylation domain CJD41_RS00490 PF03458 UPF0126 domain CJD41_RS00505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS00505 PF03466 LysR substrate binding domain CJD41_RS00510 PF03755 YicC-like family, N-terminal region CJD41_RS00510 PF08340 Domain of unknown function (DUF1732) CJD41_RS00515 PF03725 3' exoribonuclease family, domain 2 CJD41_RS00515 PF01138 3' exoribonuclease family, domain 1 CJD41_RS00520 PF00156 Phosphoribosyl transferase domain CJD41_RS00525 PF00440 Bacterial regulatory proteins, tetR family CJD41_RS00530 PF00692 dUTPase CJD41_RS00535 PF04127 DNA / pantothenate metabolism flavoprotein CJD41_RS00535 PF02441 Flavoprotein CJD41_RS00540 PF04002 RadC-like JAB domain CJD41_RS00545 PF00830 Ribosomal L28 family CJD41_RS00550 PF00471 Ribosomal protein L33 CJD41_RS00555 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CJD41_RS00555 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CJD41_RS00555 PF06827 Zinc finger found in FPG and IleRS CJD41_RS00560 PF01467 Cytidylyltransferase-like CJD41_RS00565 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CJD41_RS00570 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJD41_RS00575 PF00534 Glycosyl transferases group 1 CJD41_RS00575 PF13439 Glycosyltransferase Family 4 CJD41_RS00595 PF00534 Glycosyl transferases group 1 CJD41_RS00595 PF13439 Glycosyltransferase Family 4 CJD41_RS00600 PF01501 Glycosyl transferase family 8 CJD41_RS00600 PF08437 Glycosyl transferase family 8 C-terminal CJD41_RS00605 PF08437 Glycosyl transferase family 8 C-terminal CJD41_RS00605 PF01501 Glycosyl transferase family 8 CJD41_RS00610 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) CJD41_RS00620 PF00534 Glycosyl transferases group 1 CJD41_RS00625 PF04932 O-Antigen ligase CJD41_RS00630 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJD41_RS00635 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJD41_RS00640 PF01370 NAD dependent epimerase/dehydratase family CJD41_RS00645 PF00155 Aminotransferase class I and II CJD41_RS00650 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS00650 PF00107 Zinc-binding dehydrogenase CJD41_RS00655 PF00535 Glycosyl transferase family 2 CJD41_RS00660 PF04748 Divergent polysaccharide deacetylase CJD41_RS00665 PF01551 Peptidase family M23 CJD41_RS00670 PF01676 Metalloenzyme superfamily CJD41_RS00670 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CJD41_RS00675 PF00581 Rhodanese-like domain CJD41_RS00680 PF00462 Glutaredoxin CJD41_RS00685 PF02556 Preprotein translocase subunit SecB CJD41_RS00690 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CJD41_RS00690 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CJD41_RS00695 PF00132 Bacterial transferase hexapeptide (six repeats) CJD41_RS00695 PF06426 Serine acetyltransferase, N-terminal CJD41_RS00705 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJD41_RS00705 PF13378 Enolase C-terminal domain-like CJD41_RS00715 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS00720 PF00588 SpoU rRNA Methylase family CJD41_RS00725 PF01070 FMN-dependent dehydrogenase CJD41_RS00730 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS00730 PF07729 FCD domain CJD41_RS00735 PF02652 L-lactate permease CJD41_RS00745 PF11622 Protein of unknown function (DUF3251) CJD41_RS00755 PF10928 Protein of unknown function (DUF2810) CJD41_RS00765 PF05068 Mannitol repressor CJD41_RS00770 PF08125 Mannitol dehydrogenase C-terminal domain CJD41_RS00770 PF01232 Mannitol dehydrogenase Rossmann domain CJD41_RS00780 PF02378 Phosphotransferase system, EIIC CJD41_RS00780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJD41_RS00780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJD41_RS00785 PF00043 Glutathione S-transferase, C-terminal domain CJD41_RS00785 PF13417 Glutathione S-transferase, N-terminal domain CJD41_RS00790 PF03841 L-seryl-tRNA selenium transferase CJD41_RS00790 PF12390 Selenocysteine synthase N terminal CJD41_RS00795 PF03144 Elongation factor Tu domain 2 CJD41_RS00795 PF00009 Elongation factor Tu GTP binding domain CJD41_RS00795 PF09107 Elongation factor SelB, winged helix CJD41_RS00795 PF09106 Elongation factor SelB, winged helix CJD41_RS00800 PF00480 ROK family CJD41_RS00805 PF00171 Aldehyde dehydrogenase family CJD41_RS00810 PF07944 Beta-L-arabinofuranosidase, GH127 CJD41_RS00820 PF00596 Class II Aldolase and Adducin N-terminal domain CJD41_RS00825 PF01261 Xylose isomerase-like TIM barrel CJD41_RS00830 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CJD41_RS00835 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJD41_RS00835 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJD41_RS00840 PF03480 Bacterial extracellular solute-binding protein, family 7 CJD41_RS00845 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJD41_RS00850 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CJD41_RS00855 PF16154 Domain of unknown function (DUF4862) CJD41_RS00860 PF04074 YhcH/YjgK/YiaL CJD41_RS00865 PF02615 Malate/L-lactate dehydrogenase CJD41_RS00870 PF01614 Bacterial transcriptional regulator CJD41_RS00870 PF09339 IclR helix-turn-helix domain CJD41_RS00875 PF13247 4Fe-4S dicluster domain CJD41_RS00880 PF00155 Aminotransferase class I and II CJD41_RS00885 PF00128 Alpha amylase, catalytic domain CJD41_RS00890 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CJD41_RS00895 PF12833 Helix-turn-helix domain CJD41_RS00910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJD41_RS00910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJD41_RS00915 PF05360 yiaA/B two helix domain CJD41_RS00920 PF01757 Acyltransferase family CJD41_RS00930 PF13983 YsaB-like lipoprotein CJD41_RS00935 PF02091 Glycyl-tRNA synthetase alpha subunit CJD41_RS00940 PF02092 Glycyl-tRNA synthetase beta subunit CJD41_RS00940 PF05746 DALR anticodon binding domain CJD41_RS00945 PF13276 HTH-like domain CJD41_RS00945 PF00665 Integrase core domain CJD41_RS00945 PF13333 Integrase core domain CJD41_RS00950 PF13333 Integrase core domain CJD41_RS00950 PF13276 HTH-like domain CJD41_RS00950 PF00665 Integrase core domain CJD41_RS00975 PF00313 'Cold-shock' DNA-binding domain CJD41_RS00980 PF01381 Helix-turn-helix CJD41_RS00985 PF11254 Protein of unknown function (DUF3053) CJD41_RS00990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJD41_RS00990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJD41_RS00995 PF13488 Glycine zipper CJD41_RS00995 PF00691 OmpA family CJD41_RS01000 PF18364 Molybdopterin oxidoreductase N-terminal domain CJD41_RS01000 PF00384 Molybdopterin oxidoreductase CJD41_RS01000 PF01568 Molydopterin dinucleotide binding domain CJD41_RS01005 PF00583 Acetyltransferase (GNAT) family CJD41_RS01010 PF03352 Methyladenine glycosylase CJD41_RS01015 PF03797 Autotransporter beta-domain CJD41_RS01020 PF00419 Fimbrial protein CJD41_RS01025 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CJD41_RS01025 PF02753 Pili assembly chaperone PapD, C-terminal domain CJD41_RS01030 PF00577 Outer membrane usher protein CJD41_RS01030 PF13954 PapC N-terminal domain CJD41_RS01030 PF13953 PapC C-terminal domain CJD41_RS01035 PF00577 Outer membrane usher protein CJD41_RS01035 PF13954 PapC N-terminal domain CJD41_RS01035 PF13953 PapC C-terminal domain CJD41_RS01040 PF00419 Fimbrial protein CJD41_RS01050 PF00884 Sulfatase CJD41_RS01050 PF08019 Phosphoethanolamine transferase EptA/EptB CJD41_RS01065 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS01075 PF00860 Permease family CJD41_RS01080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD41_RS01090 PF12911 N-terminal TM domain of oligopeptide transport permease C CJD41_RS01090 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS01095 PF00005 ABC transporter CJD41_RS01095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJD41_RS01100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJD41_RS01100 PF00005 ABC transporter CJD41_RS01105 PF03222 Tryptophan/tyrosine permease family CJD41_RS01115 PF13940 Toxin Ldr, type I toxin-antitoxin system CJD41_RS01125 PF11120 Cellulose biosynthesis protein BcsF CJD41_RS01130 PF10995 Cellulose biosynthesis GIL CJD41_RS01135 PF10945 Cellulose biosynthesis protein BcsR CJD41_RS01140 PF06564 Cellulose biosynthesis protein BcsQ CJD41_RS01145 PF00535 Glycosyl transferase family 2 CJD41_RS01145 PF07238 PilZ domain CJD41_RS01150 PF03170 Bacterial cellulose synthase subunit CJD41_RS01155 PF01270 Glycosyl hydrolases family 8 CJD41_RS01160 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CJD41_RS01160 PF13176 Tetratricopeptide repeat CJD41_RS01170 PF00672 HAMP domain CJD41_RS01170 PF00990 Diguanylate cyclase, GGDEF domain CJD41_RS01170 PF17154 Gammaproteobacterial periplasmic sensor domain CJD41_RS01170 PF00563 EAL domain CJD41_RS01175 PF00375 Sodium:dicarboxylate symporter family CJD41_RS01180 PF00675 Insulinase (Peptidase family M16) CJD41_RS01180 PF05193 Peptidase M16 inactive domain CJD41_RS01185 PF00294 pfkB family carbohydrate kinase CJD41_RS01195 PF05170 AsmA family CJD41_RS01200 PF00083 Sugar (and other) transporter CJD41_RS01200 PF07690 Major Facilitator Superfamily CJD41_RS01205 PF03631 Virulence factor BrkB CJD41_RS01210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS01210 PF03466 LysR substrate binding domain CJD41_RS01215 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS01230 PF01204 Trehalase CJD41_RS01235 PF07702 UTRA domain CJD41_RS01235 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS01240 PF01380 SIS domain CJD41_RS01245 PF00294 pfkB family carbohydrate kinase CJD41_RS01250 PF03605 Anaerobic c4-dicarboxylate membrane transporter CJD41_RS01255 PF00710 Asparaginase, N-terminal CJD41_RS01255 PF17763 Glutaminase/Asparaginase C-terminal domain CJD41_RS01260 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS01260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJD41_RS01265 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CJD41_RS01270 PF01569 PAP2 superfamily CJD41_RS01275 PF01432 Peptidase family M3 CJD41_RS01280 PF04445 Putative SAM-dependent methyltransferase CJD41_RS01285 PF00854 POT family CJD41_RS01290 PF00582 Universal stress protein family CJD41_RS01295 PF10625 Universal stress protein B (UspB) CJD41_RS01300 PF01384 Phosphate transporter family CJD41_RS01310 PF13533 Biotin-lipoyl like CJD41_RS01325 PF01402 Ribbon-helix-helix protein, copG family CJD41_RS01325 PF08753 NikR C terminal nickel binding domain CJD41_RS01330 PF01648 4'-phosphopantetheinyl transferase superfamily CJD41_RS01335 PF01594 AI-2E family transporter CJD41_RS01340 PF07690 Major Facilitator Superfamily CJD41_RS01345 PF08786 DcrB CJD41_RS01350 PF02592 Putative vitamin uptake transporter CJD41_RS01355 PF01206 Sulfurtransferase TusA CJD41_RS01360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJD41_RS01360 PF02203 Tar ligand binding domain homologue CJD41_RS01360 PF00672 HAMP domain CJD41_RS01365 PF00403 Heavy-metal-associated domain CJD41_RS01370 PF07947 YhhN family CJD41_RS01375 PF10694 Protein of unknown function (DUF2500) CJD41_RS01380 PF06611 Protein of unknown function (DUF1145) CJD41_RS01390 PF00448 SRP54-type protein, GTPase domain CJD41_RS01390 PF02881 SRP54-type protein, helical bundle domain CJD41_RS01395 PF00005 ABC transporter CJD41_RS01400 PF02687 FtsX-like permease family CJD41_RS01400 PF18075 FtsX extracellular domain CJD41_RS01405 PF04542 Sigma-70 region 2 CJD41_RS01405 PF04545 Sigma-70, region 4 CJD41_RS01410 PF13458 Periplasmic binding protein CJD41_RS01420 PF12568 Acetyltransferase (GNAT) domain, PanZ CJD41_RS01425 PF13458 Periplasmic binding protein CJD41_RS01430 PF02653 Branched-chain amino acid transport system / permease component CJD41_RS01435 PF02653 Branched-chain amino acid transport system / permease component CJD41_RS01435 PF11862 Domain of unknown function (DUF3382) CJD41_RS01440 PF00005 ABC transporter CJD41_RS01440 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJD41_RS01445 PF00005 ABC transporter CJD41_RS01450 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CJD41_RS01460 PF13416 Bacterial extracellular solute-binding protein CJD41_RS01465 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS01470 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS01475 PF00005 ABC transporter CJD41_RS01475 PF17912 MalK OB fold domain CJD41_RS01480 PF03009 Glycerophosphoryl diester phosphodiesterase family CJD41_RS01485 PF10956 Protein of unknown function (DUF2756) CJD41_RS01495 PF02126 Phosphotriesterase family CJD41_RS01510 PF00294 pfkB family carbohydrate kinase CJD41_RS01515 PF00583 Acetyltransferase (GNAT) family CJD41_RS01525 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJD41_RS01525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJD41_RS01530 PF17954 Quercetinase C-terminal cupin domain CJD41_RS01530 PF02678 Pirin CJD41_RS01535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CJD41_RS01535 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS01540 PF01202 Shikimate kinase CJD41_RS01545 PF02447 GntP family permease CJD41_RS01555 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJD41_RS01555 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJD41_RS01570 PF00483 Nucleotidyl transferase CJD41_RS01575 PF08323 Starch synthase catalytic domain CJD41_RS01575 PF00534 Glycosyl transferases group 1 CJD41_RS01580 PF00343 Carbohydrate phosphorylase CJD41_RS01585 PF09339 IclR helix-turn-helix domain CJD41_RS01585 PF01614 Bacterial transcriptional regulator CJD41_RS01590 PF00701 Dihydrodipicolinate synthetase family CJD41_RS01595 PF00920 Dehydratase family CJD41_RS01600 PF07690 Major Facilitator Superfamily CJD41_RS01605 PF00465 Iron-containing alcohol dehydrogenase CJD41_RS01620 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CJD41_RS01620 PF01266 FAD dependent oxidoreductase CJD41_RS01625 PF00581 Rhodanese-like domain CJD41_RS01630 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CJD41_RS01630 PF01694 Rhomboid family CJD41_RS01635 PF00455 DeoR C terminal sensor domain CJD41_RS01635 PF08220 DeoR-like helix-turn-helix domain CJD41_RS01650 PF01139 tRNA-splicing ligase RtcB CJD41_RS01655 PF01137 RNA 3'-terminal phosphate cyclase CJD41_RS01655 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain CJD41_RS01660 PF04221 RelB antitoxin CJD41_RS01665 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ CJD41_RS01670 PF17874 MalT-like TPR region CJD41_RS01670 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS01675 PF00343 Carbohydrate phosphorylase CJD41_RS01680 PF02446 4-alpha-glucanotransferase CJD41_RS01685 PF02447 GntP family permease CJD41_RS01690 PF01521 Iron-sulphur cluster biosynthesis CJD41_RS01690 PF01106 NifU-like domain CJD41_RS01695 PF00156 Phosphoribosyl transferase domain CJD41_RS01700 PF00561 alpha/beta hydrolase fold CJD41_RS01705 PF04754 Putative transposase, YhgA-like CJD41_RS01710 PF09012 FeoC like transcriptional regulator CJD41_RS01715 PF07670 Nucleoside recognition CJD41_RS01715 PF17910 FeoB cytosolic helical domain CJD41_RS01715 PF07664 Ferrous iron transport protein B C terminus CJD41_RS01715 PF02421 Ferrous iron transport protein B CJD41_RS01720 PF04023 FeoA domain CJD41_RS01730 PF09371 Tex-like protein N-terminal domain CJD41_RS01730 PF17674 HHH domain CJD41_RS01730 PF00575 S1 RNA binding domain CJD41_RS01730 PF16921 Tex protein YqgF-like domain CJD41_RS01735 PF01272 Transcription elongation factor, GreA/GreB, C-term CJD41_RS01735 PF03449 Transcription elongation factor, N-terminal CJD41_RS01740 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS01740 PF00072 Response regulator receiver domain CJD41_RS01745 PF00672 HAMP domain CJD41_RS01745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS01745 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS01750 PF01293 Phosphoenolpyruvate carboxykinase CJD41_RS01755 PF13687 Domain of unknown function (DUF4153) CJD41_RS01760 PF01430 Hsp33 protein CJD41_RS01765 PF01479 S4 domain CJD41_RS01770 PF13419 Haloacid dehalogenase-like hydrolase CJD41_RS01775 PF07095 Intracellular growth attenuator protein IgaA CJD41_RS01780 PF00293 NUDIX domain CJD41_RS01785 PF00912 Transglycosylase CJD41_RS01785 PF00905 Penicillin binding protein transpeptidase domain CJD41_RS01785 PF17092 Penicillin-binding protein OB-like domain CJD41_RS01795 PF05137 Fimbrial assembly protein (PilN) CJD41_RS01805 PF10748 DNA utilization proteins HofP CJD41_RS01810 PF03958 Bacterial type II/III secretion system short domain CJD41_RS01810 PF00263 Bacterial type II and III secretion system protein CJD41_RS01820 PF01202 Shikimate kinase CJD41_RS01825 PF01761 3-dehydroquinate synthase CJD41_RS01830 PF05036 Sporulation related domain CJD41_RS01840 PF02086 D12 class N6 adenine-specific DNA methyltransferase CJD41_RS01845 PF00834 Ribulose-phosphate 3 epimerase family CJD41_RS01850 PF13419 Haloacid dehalogenase-like hydrolase CJD41_RS01855 PF00579 tRNA synthetases class I (W and Y) CJD41_RS01860 PF13978 Protein of unknown function (DUF4223) CJD41_RS01870 PF10414 Sirohaem synthase dimerisation region CJD41_RS01870 PF14824 Sirohaem biosynthesis protein central CJD41_RS01870 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJD41_RS01875 PF01226 Formate/nitrite transporter CJD41_RS01880 PF13806 Rieske-like [2Fe-2S] domain CJD41_RS01885 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJD41_RS01885 PF04324 BFD-like [2Fe-2S] binding domain CJD41_RS01885 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJD41_RS01885 PF18267 Rubredoxin NAD+ reductase C-terminal domain CJD41_RS01885 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS01890 PF07690 Major Facilitator Superfamily CJD41_RS01895 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJD41_RS01900 PF10832 Protein of unknown function (DUF2559) CJD41_RS01905 PF02661 Fic/DOC family CJD41_RS01910 PF00117 Glutamine amidotransferase class-I CJD41_RS01915 PF00202 Aminotransferase class-III CJD41_RS01920 PF12805 FUSC-like inner membrane protein yccS CJD41_RS01925 PF13545 Crp-like helix-turn-helix domain CJD41_RS01925 PF00027 Cyclic nucleotide-binding domain CJD41_RS01930 PF02566 OsmC-like protein CJD41_RS01935 PF00485 Phosphoribulokinase / Uridine kinase family CJD41_RS01940 PF06794 Uncharacterised protein family (UPF0270) CJD41_RS01945 PF00561 alpha/beta hydrolase fold CJD41_RS01950 PF08803 Putative mono-oxygenase ydhR CJD41_RS01955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS01955 PF03466 LysR substrate binding domain CJD41_RS01960 PF00005 ABC transporter CJD41_RS01960 PF12848 ABC transporter CJD41_RS01965 PF02525 Flavodoxin-like fold CJD41_RS01975 PF09526 Probable metal-binding protein (DUF2387) CJD41_RS01980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJD41_RS01990 PF04102 SlyX CJD41_RS01995 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CJD41_RS01995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJD41_RS02000 PF13309 HTH domain CJD41_RS02000 PF08348 YheO-like PAS domain CJD41_RS02005 PF02635 DsrE/DsrF-like family CJD41_RS02010 PF02635 DsrE/DsrF-like family CJD41_RS02015 PF04077 DsrH like protein CJD41_RS02020 PF00164 Ribosomal protein S12/S23 CJD41_RS02025 PF00177 Ribosomal protein S7p/S5e CJD41_RS02030 PF03764 Elongation factor G, domain IV CJD41_RS02030 PF14492 Elongation Factor G, domain II CJD41_RS02030 PF00009 Elongation factor Tu GTP binding domain CJD41_RS02030 PF03144 Elongation factor Tu domain 2 CJD41_RS02030 PF00679 Elongation factor G C-terminus CJD41_RS02035 PF03144 Elongation factor Tu domain 2 CJD41_RS02035 PF03143 Elongation factor Tu C-terminal domain CJD41_RS02035 PF00009 Elongation factor Tu GTP binding domain CJD41_RS02045 PF04324 BFD-like [2Fe-2S] binding domain CJD41_RS02050 PF00210 Ferritin-like domain CJD41_RS02055 PF01478 Type IV leader peptidase family CJD41_RS02065 PF00338 Ribosomal protein S10p/S20e CJD41_RS02070 PF00297 Ribosomal protein L3 CJD41_RS02075 PF00573 Ribosomal protein L4/L1 family CJD41_RS02080 PF00276 Ribosomal protein L23 CJD41_RS02085 PF00181 Ribosomal Proteins L2, RNA binding domain CJD41_RS02085 PF03947 Ribosomal Proteins L2, C-terminal domain CJD41_RS02090 PF00203 Ribosomal protein S19 CJD41_RS02095 PF00237 Ribosomal protein L22p/L17e CJD41_RS02100 PF00189 Ribosomal protein S3, C-terminal domain CJD41_RS02100 PF07650 KH domain CJD41_RS02105 PF00252 Ribosomal protein L16p/L10e CJD41_RS02110 PF00831 Ribosomal L29 protein CJD41_RS02115 PF00366 Ribosomal protein S17 CJD41_RS02120 PF00238 Ribosomal protein L14p/L23e CJD41_RS02125 PF00467 KOW motif CJD41_RS02125 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CJD41_RS02130 PF00673 ribosomal L5P family C-terminus CJD41_RS02130 PF00281 Ribosomal protein L5 CJD41_RS02135 PF00253 Ribosomal protein S14p/S29e CJD41_RS02140 PF00410 Ribosomal protein S8 CJD41_RS02145 PF00347 Ribosomal protein L6 CJD41_RS02150 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CJD41_RS02155 PF03719 Ribosomal protein S5, C-terminal domain CJD41_RS02155 PF00333 Ribosomal protein S5, N-terminal domain CJD41_RS02160 PF00327 Ribosomal protein L30p/L7e CJD41_RS02165 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CJD41_RS02170 PF00344 SecY translocase CJD41_RS02175 PF00444 Ribosomal protein L36 CJD41_RS02180 PF00416 Ribosomal protein S13/S18 CJD41_RS02185 PF00411 Ribosomal protein S11 CJD41_RS02190 PF01479 S4 domain CJD41_RS02190 PF00163 Ribosomal protein S4/S9 N-terminal domain CJD41_RS02195 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CJD41_RS02195 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CJD41_RS02195 PF01000 RNA polymerase Rpb3/RpoA insert domain CJD41_RS02200 PF01196 Ribosomal protein L17 CJD41_RS02205 PF09350 Domain of unknown function (DUF1992) CJD41_RS02215 PF03889 Alternative ribosome-rescue factor A CJD41_RS02220 PF01741 Large-conductance mechanosensitive channel, MscL CJD41_RS02225 PF02254 TrkA-N domain CJD41_RS02225 PF02080 TrkA-C domain CJD41_RS02230 PF01029 NusB family CJD41_RS02230 PF01189 16S rRNA methyltransferase RsmB/F CJD41_RS02235 PF00551 Formyl transferase CJD41_RS02235 PF02911 Formyl transferase, C-terminal domain CJD41_RS02240 PF01327 Polypeptide deformylase CJD41_RS02250 PF04361 Protein of unknown function (DUF494) CJD41_RS02255 PF01396 Topoisomerase DNA binding C4 zinc finger CJD41_RS02260 PF01300 Telomere recombination CJD41_RS02265 PF01488 Shikimate / quinate 5-dehydrogenase CJD41_RS02265 PF08501 Shikimate dehydrogenase substrate binding domain CJD41_RS02265 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CJD41_RS02270 PF07369 Protein of unknown function (DUF1488) CJD41_RS02275 PF00132 Bacterial transferase hexapeptide (six repeats) CJD41_RS02300 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CJD41_RS02305 PF12804 MobA-like NTP transferase domain CJD41_RS02310 PF06288 Protein of unknown function (DUF1040) CJD41_RS02315 PF01636 Phosphotransferase enzyme family CJD41_RS02320 PF01323 DSBA-like thioredoxin domain CJD41_RS02325 PF01553 Acyltransferase CJD41_RS02335 PF01367 5'-3' exonuclease, C-terminal SAM fold CJD41_RS02335 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CJD41_RS02335 PF00476 DNA polymerase family A CJD41_RS02335 PF01612 3'-5' exonuclease CJD41_RS02340 PF01926 50S ribosome-binding GTPase CJD41_RS02355 PF04055 Radical SAM superfamily CJD41_RS02355 PF06969 HemN C-terminal domain CJD41_RS02365 PF00158 Sigma-54 interaction domain CJD41_RS02365 PF02954 Bacterial regulatory protein, Fis family CJD41_RS02365 PF00072 Response regulator receiver domain CJD41_RS02370 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS02370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS02370 PF00989 PAS fold CJD41_RS02380 PF00120 Glutamine synthetase, catalytic domain CJD41_RS02380 PF03951 Glutamine synthetase, beta-Grasp domain CJD41_RS02390 PF00679 Elongation factor G C-terminus CJD41_RS02390 PF03144 Elongation factor Tu domain 2 CJD41_RS02390 PF00009 Elongation factor Tu GTP binding domain CJD41_RS02405 PF04055 Radical SAM superfamily CJD41_RS02430 PF06178 Oligogalacturonate-specific porin protein (KdgM) CJD41_RS02445 PF01055 Glycosyl hydrolases family 31 CJD41_RS02450 PF01263 Aldose 1-epimerase CJD41_RS02465 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJD41_RS02465 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJD41_RS02470 PF00294 pfkB family carbohydrate kinase CJD41_RS02475 PF08220 DeoR-like helix-turn-helix domain CJD41_RS02475 PF00455 DeoR C terminal sensor domain CJD41_RS02480 PF13419 Haloacid dehalogenase-like hydrolase CJD41_RS02485 PF03631 Virulence factor BrkB CJD41_RS02490 PF02580 D-Tyr-tRNA(Tyr) deacylase CJD41_RS02495 PF00583 Acetyltransferase (GNAT) family CJD41_RS02495 PF09500 Putative thioesterase (yiiD_Cterm) CJD41_RS02500 PF01381 Helix-turn-helix CJD41_RS02505 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system CJD41_RS02510 PF07859 alpha/beta hydrolase fold CJD41_RS02515 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system CJD41_RS02525 PF04216 Protein involved in formate dehydrogenase formation CJD41_RS02530 PF01292 Prokaryotic cytochrome b561 CJD41_RS02535 PF09163 Formate dehydrogenase N, transmembrane CJD41_RS02535 PF13247 4Fe-4S dicluster domain CJD41_RS02545 PF02634 FdhD/NarQ family CJD41_RS02555 PF12889 Protein of unknown function (DUF3829) CJD41_RS02565 PF03591 AzlC protein CJD41_RS02575 PF05336 L-rhamnose mutarotase CJD41_RS02580 PF00465 Iron-containing alcohol dehydrogenase CJD41_RS02585 PF00596 Class II Aldolase and Adducin N-terminal domain CJD41_RS02590 PF06134 L-rhamnose isomerase (RhaA) CJD41_RS02595 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJD41_RS02595 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJD41_RS02600 PF02311 AraC-like ligand binding domain CJD41_RS02600 PF12833 Helix-turn-helix domain CJD41_RS02610 PF02311 AraC-like ligand binding domain CJD41_RS02610 PF12833 Helix-turn-helix domain CJD41_RS02615 PF06379 L-rhamnose-proton symport protein (RhaT) CJD41_RS02620 PF06178 Oligogalacturonate-specific porin protein (KdgM) CJD41_RS02625 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJD41_RS02630 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CJD41_RS02635 PF03480 Bacterial extracellular solute-binding protein, family 7 CJD41_RS02640 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CJD41_RS02640 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CJD41_RS02645 PF03475 3-alpha domain CJD41_RS02645 PF03473 MOSC domain CJD41_RS02660 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS02660 PF00672 HAMP domain CJD41_RS02660 PF16527 Two-component sensor protein CpxA, periplasmic domain CJD41_RS02660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS02665 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS02665 PF00072 Response regulator receiver domain CJD41_RS02670 PF07813 LTXXQ motif family protein CJD41_RS02675 PF02899 Phage integrase, N-terminal SAM-like domain CJD41_RS02675 PF00589 Phage integrase family CJD41_RS02715 PF05840 Bacteriophage replication gene A protein (GPA) CJD41_RS02830 PF02796 Helix-turn-helix domain of resolvase CJD41_RS02830 PF00239 Resolvase, N terminal domain CJD41_RS02870 PF04606 Ogr/Delta-like zinc finger CJD41_RS02880 PF16916 Dimerisation domain of Zinc Transporter CJD41_RS02880 PF01545 Cation efflux family CJD41_RS02885 PF00365 Phosphofructokinase CJD41_RS02895 PF02611 CDP-diacylglycerol pyrophosphatase CJD41_RS02905 PF00294 pfkB family carbohydrate kinase CJD41_RS02915 PF00155 Aminotransferase class I and II CJD41_RS02915 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS02925 PF02611 CDP-diacylglycerol pyrophosphatase CJD41_RS02935 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJD41_RS02935 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJD41_RS02940 PF04198 Putative sugar-binding domain CJD41_RS02945 PF00005 ABC transporter CJD41_RS02950 PF02653 Branched-chain amino acid transport system / permease component CJD41_RS02955 PF02653 Branched-chain amino acid transport system / permease component CJD41_RS02960 PF13407 Periplasmic binding protein domain CJD41_RS02965 PF01791 DeoC/LacD family aldolase CJD41_RS02970 PF03992 Antibiotic biosynthesis monooxygenase CJD41_RS02975 PF00834 Ribulose-phosphate 3 epimerase family CJD41_RS02980 PF00121 Triosephosphate isomerase CJD41_RS02985 PF07305 Protein of unknown function (DUF1454) CJD41_RS02990 PF05656 Protein of unknown function (DUF805) CJD41_RS02995 PF00970 Oxidoreductase FAD-binding domain CJD41_RS02995 PF00175 Oxidoreductase NAD-binding domain CJD41_RS03000 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CJD41_RS03005 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJD41_RS03005 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJD41_RS03010 PF00230 Major intrinsic protein CJD41_RS03015 PF06005 Cell division protein ZapB CJD41_RS03020 PF03737 Aldolase/RraA CJD41_RS03025 PF01040 UbiA prenyltransferase family CJD41_RS03030 PF07724 AAA domain (Cdc48 subfamily) CJD41_RS03030 PF00004 ATPase family associated with various cellular activities (AAA) CJD41_RS03030 PF10431 C-terminal, D2-small domain, of ClpB protein CJD41_RS03035 PF00227 Proteasome subunit CJD41_RS03040 PF05036 Sporulation related domain CJD41_RS03045 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS03050 PF17764 3′ DNA-binding domain (3′BD) CJD41_RS03050 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CJD41_RS03050 PF00270 DEAD/DEAH box helicase CJD41_RS03050 PF18074 Primosomal protein N C-terminal domain CJD41_RS03050 PF00271 Helicase conserved C-terminal domain CJD41_RS03055 PF01197 Ribosomal protein L31 CJD41_RS03065 PF05935 Arylsulfotransferase (ASST) CJD41_RS03065 PF17425 Arylsulfotransferase Ig-like domain CJD41_RS03070 PF01340 Met Apo-repressor, MetJ CJD41_RS03075 PF01053 Cys/Met metabolism PLP-dependent enzyme CJD41_RS03080 PF03447 Homoserine dehydrogenase, NAD binding domain CJD41_RS03080 PF00742 Homoserine dehydrogenase CJD41_RS03080 PF00696 Amino acid kinase family CJD41_RS03085 PF00924 Mechanosensitive ion channel CJD41_RS03085 PF05552 Conserved TM helix CJD41_RS03100 PF17936 Bacterial Ig domain CJD41_RS03100 PF02872 5'-nucleotidase, C-terminal domain CJD41_RS03100 PF00149 Calcineurin-like phosphoesterase CJD41_RS03105 PF00464 Serine hydroxymethyltransferase CJD41_RS03110 PF00842 Alanine racemase, C-terminal domain CJD41_RS03110 PF01168 Alanine racemase, N-terminal domain CJD41_RS03115 PF00155 Aminotransferase class I and II CJD41_RS03115 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS03125 PF02219 Methylenetetrahydrofolate reductase CJD41_RS03130 PF00141 Peroxidase CJD41_RS03135 PF06940 Domain of unknown function (DUF1287) CJD41_RS03140 PF00465 Iron-containing alcohol dehydrogenase CJD41_RS03145 PF00923 Transaldolase/Fructose-6-phosphate aldolase CJD41_RS03150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJD41_RS03150 PF00381 PTS HPr component phosphorylation site CJD41_RS03150 PF05524 PEP-utilising enzyme, N-terminal CJD41_RS03150 PF00391 PEP-utilising enzyme, mobile domain CJD41_RS03150 PF02896 PEP-utilising enzyme, TIM barrel domain CJD41_RS03160 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJD41_RS03165 PF02901 Pyruvate formate lyase-like CJD41_RS03165 PF01228 Glycine radical CJD41_RS03170 PF04055 Radical SAM superfamily CJD41_RS03175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJD41_RS03180 PF12833 Helix-turn-helix domain CJD41_RS03190 PF00311 Phosphoenolpyruvate carboxylase CJD41_RS03200 PF07687 Peptidase dimerisation domain CJD41_RS03200 PF01546 Peptidase family M20/M25/M40 CJD41_RS03205 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJD41_RS03205 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJD41_RS03210 PF00696 Amino acid kinase family CJD41_RS03215 PF00206 Lyase CJD41_RS03215 PF14698 Argininosuccinate lyase C-terminal CJD41_RS03225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS03225 PF03466 LysR substrate binding domain CJD41_RS03230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJD41_RS03230 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS03240 PF00440 Bacterial regulatory proteins, tetR family CJD41_RS03245 PF07226 Protein of unknown function (DUF1422) CJD41_RS03250 PF05958 tRNA (Uracil-5-)-methyltransferase CJD41_RS03255 PF00593 TonB dependent receptor CJD41_RS03255 PF07715 TonB-dependent Receptor Plug Domain CJD41_RS03260 PF01177 Asp/Glu/Hydantoin racemase CJD41_RS03295 PF13673 Acetyltransferase (GNAT) domain CJD41_RS03300 PF04204 Homoserine O-succinyltransferase CJD41_RS03305 PF01274 Malate synthase CJD41_RS03310 PF00463 Isocitrate lyase family CJD41_RS03315 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CJD41_RS03325 PF09339 IclR helix-turn-helix domain CJD41_RS03325 PF01614 Bacterial transcriptional regulator CJD41_RS03330 PF02574 Homocysteine S-methyltransferase CJD41_RS03330 PF00809 Pterin binding enzyme CJD41_RS03330 PF02607 B12 binding domain CJD41_RS03330 PF02965 Vitamin B12 dependent methionine synthase, activation domain CJD41_RS03330 PF02310 B12 binding domain CJD41_RS03335 PF02690 Na+/Pi-cotransporter CJD41_RS03340 PF03575 Peptidase family S51 CJD41_RS03350 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CJD41_RS03355 PF00849 RNA pseudouridylate synthase CJD41_RS03355 PF01479 S4 domain CJD41_RS03360 PF11656 YjbD family (DUF3811) CJD41_RS03365 PF08220 DeoR-like helix-turn-helix domain CJD41_RS03365 PF00455 DeoR C terminal sensor domain CJD41_RS03395 PF08765 Mor transcription activator family CJD41_RS03400 PF01842 ACT domain CJD41_RS03400 PF00696 Amino acid kinase family CJD41_RS03405 PF00342 Phosphoglucose isomerase CJD41_RS03415 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF CJD41_RS03420 PF06251 Capsule biosynthesis GfcC CJD41_RS03425 PF06082 Exopolysaccharide biosynthesis protein YbjH CJD41_RS03430 PF06146 Phosphate-starvation-inducible E CJD41_RS03435 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS03440 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS03440 PF14785 Maltose transport system permease protein MalF P2 domain CJD41_RS03445 PF01547 Bacterial extracellular solute-binding protein CJD41_RS03450 PF17912 MalK OB fold domain CJD41_RS03450 PF00005 ABC transporter CJD41_RS03455 PF02264 LamB porin CJD41_RS03460 PF07148 Maltose operon periplasmic protein precursor (MalM) CJD41_RS03465 PF04345 Chorismate lyase CJD41_RS03470 PF01040 UbiA prenyltransferase family CJD41_RS03475 PF01553 Acyltransferase CJD41_RS03480 PF01219 Prokaryotic diacylglycerol kinase CJD41_RS03485 PF01726 LexA DNA binding domain CJD41_RS03485 PF00717 Peptidase S24-like CJD41_RS03490 PF01554 MatE CJD41_RS03500 PF05532 CsbD-like CJD41_RS03505 PF01475 Ferric uptake regulator family CJD41_RS03515 PF01207 Dihydrouridine synthase (Dus) CJD41_RS03520 PF09583 Phage shock protein G (Phageshock_PspG) CJD41_RS03525 PF00107 Zinc-binding dehydrogenase CJD41_RS03525 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS03530 PF03796 DnaB-like helicase C terminal domain CJD41_RS03530 PF00772 DnaB-like helicase N terminal domain CJD41_RS03535 PF01168 Alanine racemase, N-terminal domain CJD41_RS03535 PF00842 Alanine racemase, C-terminal domain CJD41_RS03540 PF00155 Aminotransferase class I and II CJD41_RS03550 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CJD41_RS03555 PF01894 Uncharacterised protein family UPF0047 CJD41_RS03560 PF04237 YjbR CJD41_RS03575 PF17755 UvrA DNA-binding domain CJD41_RS03575 PF17760 UvrA interaction domain CJD41_RS03575 PF00005 ABC transporter CJD41_RS03585 PF00436 Single-strand binding protein family CJD41_RS03620 PF00664 ABC transporter transmembrane region CJD41_RS03620 PF00005 ABC transporter CJD41_RS03625 PF15940 Family of unknown function CJD41_RS03630 PF12792 CSS motif domain associated with EAL CJD41_RS03630 PF00563 EAL domain CJD41_RS03635 PF12833 Helix-turn-helix domain CJD41_RS03640 PF09278 MerR, DNA binding CJD41_RS03640 PF00376 MerR family regulatory protein CJD41_RS03650 PF00860 Permease family CJD41_RS03660 PF00999 Sodium/hydrogen exchanger family CJD41_RS03665 PF03466 LysR substrate binding domain CJD41_RS03665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS03670 PF03788 LrgA family CJD41_RS03675 PF04172 LrgB-like family CJD41_RS03680 PF00474 Sodium:solute symporter family CJD41_RS03685 PF04341 Protein of unknown function, DUF485 CJD41_RS03695 PF16177 Acetyl-coenzyme A synthetase N-terminus CJD41_RS03695 PF00501 AMP-binding enzyme CJD41_RS03695 PF13193 AMP-binding enzyme C-terminal domain CJD41_RS03700 PF02335 Cytochrome c552 CJD41_RS03705 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CJD41_RS03705 PF13435 Cytochrome c554 and c-prime CJD41_RS03710 PF13247 4Fe-4S dicluster domain CJD41_RS03710 PF00037 4Fe-4S binding domain CJD41_RS03715 PF03916 Polysulphide reductase, NrfD CJD41_RS03720 PF01578 Cytochrome C assembly protein CJD41_RS03720 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CJD41_RS03730 PF00375 Sodium:dicarboxylate symporter family CJD41_RS03735 PF08238 Sel1 repeat CJD41_RS03750 PF00583 Acetyltransferase (GNAT) family CJD41_RS03755 PF06983 3-demethylubiquinone-9 3-methyltransferase CJD41_RS03760 PF03831 PhnA domain CJD41_RS03760 PF08274 PhnA Zinc-Ribbon CJD41_RS03765 PF00083 Sugar (and other) transporter CJD41_RS03765 PF08946 Osmosensory transporter coiled coil CJD41_RS03775 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS03775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS03780 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS03780 PF00072 Response regulator receiver domain CJD41_RS03785 PF00884 Sulfatase CJD41_RS03785 PF08019 Phosphoethanolamine transferase EptA/EptB CJD41_RS03790 PF13520 Amino acid permease CJD41_RS03795 PF12833 Helix-turn-helix domain CJD41_RS03800 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CJD41_RS03800 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CJD41_RS03800 PF01276 Orn/Lys/Arg decarboxylase, major domain CJD41_RS03805 PF12833 Helix-turn-helix domain CJD41_RS03810 PF02056 Family 4 glycosyl hydrolase CJD41_RS03810 PF11975 Family 4 glycosyl hydrolase C-terminal domain CJD41_RS03820 PF05683 Fumarase C-terminus CJD41_RS03820 PF05681 Fumarate hydratase (Fumerase) CJD41_RS03825 PF03605 Anaerobic c4-dicarboxylate membrane transporter CJD41_RS03835 PF00072 Response regulator receiver domain CJD41_RS03840 PF00989 PAS fold CJD41_RS03840 PF17203 Single cache domain 3 CJD41_RS03840 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CJD41_RS03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS03850 PF12800 4Fe-4S binding domain CJD41_RS03850 PF13247 4Fe-4S dicluster domain CJD41_RS03855 PF04976 DMSO reductase anchor subunit (DmsC) CJD41_RS03860 PF02613 Nitrate reductase delta subunit CJD41_RS03870 PF06977 SdiA-regulated CJD41_RS03880 PF00005 ABC transporter CJD41_RS03885 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS03885 PF00072 Response regulator receiver domain CJD41_RS03890 PF12833 Helix-turn-helix domain CJD41_RS03910 PF01569 PAP2 superfamily CJD41_RS03930 PF11412 Disulphide bond corrector protein DsbC CJD41_RS03930 PF02683 Cytochrome C biogenesis protein transmembrane region CJD41_RS03935 PF03091 CutA1 divalent ion tolerance protein CJD41_RS03940 PF03605 Anaerobic c4-dicarboxylate membrane transporter CJD41_RS03945 PF00206 Lyase CJD41_RS03945 PF10415 Fumarase C C-terminus CJD41_RS03950 PF04186 FxsA cytoplasmic membrane protein CJD41_RS03960 PF00166 Chaperonin 10 Kd subunit CJD41_RS03965 PF00118 TCP-1/cpn60 chaperonin family CJD41_RS03970 PF13698 Domain of unknown function (DUF4156) CJD41_RS03975 PF15922 YjeJ-like CJD41_RS03980 PF04055 Radical SAM superfamily CJD41_RS03985 PF08207 Elongation factor P (EF-P) KOW-like domain CJD41_RS03985 PF01132 Elongation factor P (EF-P) OB domain CJD41_RS03985 PF09285 Elongation factor P, C-terminal CJD41_RS03990 PF08085 Entericidin EcnA/B family CJD41_RS04000 PF08085 Entericidin EcnA/B family CJD41_RS04005 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS04010 PF00893 Small Multidrug Resistance protein CJD41_RS04015 PF08212 Lipocalin-like domain CJD41_RS04020 PF02313 Fumarate reductase subunit D CJD41_RS04025 PF02300 Fumarate reductase subunit C CJD41_RS04030 PF13183 4Fe-4S dicluster domain CJD41_RS04030 PF13085 2Fe-2S iron-sulfur cluster binding domain CJD41_RS04035 PF00890 FAD binding domain CJD41_RS04035 PF02910 Fumarate reductase flavoprotein C-term CJD41_RS04040 PF00152 tRNA synthetases class II (D, K and N) CJD41_RS04045 PF13520 Amino acid permease CJD41_RS04050 PF10840 Protein of unknown function (DUF2645) CJD41_RS04060 PF02666 Phosphatidylserine decarboxylase CJD41_RS04065 PF03193 RsgA GTPase CJD41_RS04070 PF00929 Exonuclease CJD41_RS04075 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJD41_RS04095 PF08331 Domain of unknown function (DUF1730) CJD41_RS04100 PF03853 YjeF-related protein N-terminus CJD41_RS04100 PF01256 Carbohydrate kinase CJD41_RS04105 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CJD41_RS04110 PF01520 N-acetylmuramoyl-L-alanine amidase CJD41_RS04115 PF01119 DNA mismatch repair protein, C-terminal domain CJD41_RS04115 PF08676 MutL C terminal dimerisation domain CJD41_RS04125 PF17209 Hfq protein CJD41_RS04130 PF01926 50S ribosome-binding GTPase CJD41_RS04130 PF13167 GTP-binding GTPase N-terminal CJD41_RS04130 PF16360 GTP-binding GTPase Middle Region CJD41_RS04135 PF12221 Bacterial membrane protein N terminal CJD41_RS04135 PF01145 SPFH domain / Band 7 family CJD41_RS04140 PF01145 SPFH domain / Band 7 family CJD41_RS04145 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CJD41_RS04150 PF00709 Adenylosuccinate synthetase CJD41_RS04155 PF02082 Transcriptional regulator CJD41_RS04160 PF00575 S1 RNA binding domain CJD41_RS04160 PF00773 RNB domain CJD41_RS04160 PF08461 Ribonuclease R winged-helix domain CJD41_RS04160 PF17876 Cold shock domain CJD41_RS04160 PF08206 Ribonuclease B OB domain CJD41_RS04165 PF00588 SpoU rRNA Methylase family CJD41_RS04165 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJD41_RS04170 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) CJD41_RS04175 PF04012 PspA/IM30 family CJD41_RS04185 PF10679 Protein of unknown function (DUF2491) CJD41_RS04190 PF03994 Domain of Unknown Function (DUF350) CJD41_RS04195 PF06693 Protein of unknown function (DUF1190) CJD41_RS04200 PF03738 Glutathionylspermidine synthase preATP-grasp CJD41_RS04205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJD41_RS04205 PF02770 Acyl-CoA dehydrogenase, middle domain CJD41_RS04205 PF18158 Adaptive response protein AidB N-terminal domain CJD41_RS04210 PF07338 Protein of unknown function (DUF1471) CJD41_RS04215 PF07338 Protein of unknown function (DUF1471) CJD41_RS04220 PF00326 Prolyl oligopeptidase family CJD41_RS04225 PF08220 DeoR-like helix-turn-helix domain CJD41_RS04225 PF00455 DeoR C terminal sensor domain CJD41_RS04235 PF03611 PTS system sugar-specific permease component CJD41_RS04240 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJD41_RS04245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJD41_RS04250 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CJD41_RS04255 PF01261 Xylose isomerase-like TIM barrel CJD41_RS04260 PF00596 Class II Aldolase and Adducin N-terminal domain CJD41_RS04265 PF07338 Protein of unknown function (DUF1471) CJD41_RS04280 PF01250 Ribosomal protein S6 CJD41_RS04285 PF00436 Single-strand binding protein family CJD41_RS04290 PF01084 Ribosomal protein S18 CJD41_RS04295 PF03948 Ribosomal protein L9, C-terminal domain CJD41_RS04295 PF01281 Ribosomal protein L9, N-terminal domain CJD41_RS04305 PF08525 Opacity-associated protein A N-terminal motif CJD41_RS04305 PF04225 Opacity-associated protein A LysM-like domain CJD41_RS04310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJD41_RS04310 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CJD41_RS04315 PF00324 Amino acid permease CJD41_RS04330 PF04405 Domain of Unknown function (DUF542) CJD41_RS04330 PF01814 Hemerythrin HHE cation binding domain CJD41_RS04335 PF00892 EamA-like transporter family CJD41_RS04345 PF01638 HxlR-like helix-turn-helix CJD41_RS04350 PF00149 Calcineurin-like phosphoesterase CJD41_RS04350 PF02872 5'-nucleotidase, C-terminal domain CJD41_RS04360 PF00459 Inositol monophosphatase family CJD41_RS04365 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CJD41_RS04375 PF06526 Protein of unknown function (DUF1107) CJD41_RS04380 PF01595 Cyclin M transmembrane N-terminal domain CJD41_RS04380 PF00571 CBS domain CJD41_RS04380 PF03471 Transporter associated domain CJD41_RS04385 PF01625 Peptide methionine sulfoxide reductase CJD41_RS04390 PF01103 Surface antigen CJD41_RS04390 PF07244 Surface antigen variable number repeat CJD41_RS04390 PF17243 POTRA domain TamA domain 1 CJD41_RS04395 PF04357 TamB, inner membrane protein subunit of TAM complex CJD41_RS04400 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CJD41_RS04405 PF07690 Major Facilitator Superfamily CJD41_RS04410 PF01979 Amidohydrolase family CJD41_RS04415 PF00719 Inorganic pyrophosphatase CJD41_RS04420 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CJD41_RS04425 PF08245 Mur ligase middle domain CJD41_RS04425 PF02875 Mur ligase family, glutamate ligase domain CJD41_RS04425 PF01225 Mur ligase family, catalytic domain CJD41_RS04430 PF04751 Protein of unknown function (DUF615) CJD41_RS04435 PF01523 Putative modulator of DNA gyrase CJD41_RS04440 PF07361 Cytochrome b562 CJD41_RS04470 PF01979 Amidohydrolase family CJD41_RS04475 PF03841 L-seryl-tRNA selenium transferase CJD41_RS04480 PF07071 KDGP aldolase CJD41_RS04485 PF05043 Mga helix-turn-helix domain CJD41_RS04485 PF00874 PRD domain CJD41_RS04485 PF08279 HTH domain CJD41_RS04485 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJD41_RS04490 PF04221 RelB antitoxin CJD41_RS04495 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CJD41_RS04505 PF13597 Anaerobic ribonucleoside-triphosphate reductase CJD41_RS04505 PF03477 ATP cone domain CJD41_RS04515 PF00367 phosphotransferase system, EIIB CJD41_RS04515 PF02378 Phosphotransferase system, EIIC CJD41_RS04525 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS04530 PF17059 MgtA leader peptide CJD41_RS04545 PF01042 Endoribonuclease L-PSP CJD41_RS04550 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CJD41_RS04550 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CJD41_RS04555 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJD41_RS04555 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJD41_RS04560 PF08052 PyrBI operon leader peptide CJD41_RS04570 PF01316 Arginine repressor, DNA binding domain CJD41_RS04570 PF02863 Arginine repressor, C-terminal domain CJD41_RS04575 PF03606 C4-dicarboxylate anaerobic carrier CJD41_RS04580 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJD41_RS04580 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJD41_RS04585 PF00696 Amino acid kinase family CJD41_RS04595 PF04074 YhcH/YjgK/YiaL CJD41_RS04600 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJD41_RS04600 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJD41_RS04605 PF06877 Regulator of ribonuclease activity B CJD41_RS04610 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CJD41_RS04615 PF12276 Protein of unknown function (DUF3617) CJD41_RS04620 PF00583 Acetyltransferase (GNAT) family CJD41_RS04625 PF05987 Bacterial protein of unknown function (DUF898) CJD41_RS04630 PF08264 Anticodon-binding domain of tRNA CJD41_RS04630 PF00133 tRNA synthetases class I (I, L, M and V) CJD41_RS04630 PF10458 Valyl tRNA synthetase tRNA binding arm CJD41_RS04635 PF04364 DNA polymerase III chi subunit, HolC CJD41_RS04640 PF02789 Cytosol aminopeptidase family, N-terminal domain CJD41_RS04640 PF00883 Cytosol aminopeptidase family, catalytic domain CJD41_RS04650 PF03739 Lipopolysaccharide export system permease LptF/LptG CJD41_RS04655 PF03739 Lipopolysaccharide export system permease LptF/LptG CJD41_RS04660 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS04665 PF00106 short chain dehydrogenase CJD41_RS04670 PF00107 Zinc-binding dehydrogenase CJD41_RS04670 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS04675 PF01202 Shikimate kinase CJD41_RS04680 PF00107 Zinc-binding dehydrogenase CJD41_RS04680 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS04725 PF06443 SEF14-like adhesin CJD41_RS04730 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CJD41_RS04730 PF02753 Pili assembly chaperone PapD, C-terminal domain CJD41_RS04740 PF12833 Helix-turn-helix domain CJD41_RS04760 PF06977 SdiA-regulated CJD41_RS04780 PF01709 Transcriptional regulator CJD41_RS04785 PF13847 Methyltransferase domain CJD41_RS04790 PF09857 Putative toxin of bacterial toxin-antitoxin pair CJD41_RS04815 PF03625 Domain of unknown function DUF302 CJD41_RS04815 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CJD41_RS04820 PF01738 Dienelactone hydrolase family CJD41_RS04830 PF07729 FCD domain CJD41_RS04830 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS04835 PF00579 tRNA synthetases class I (W and Y) CJD41_RS04845 PF01177 Asp/Glu/Hydantoin racemase CJD41_RS04855 PF01979 Amidohydrolase family CJD41_RS04860 PF07670 Nucleoside recognition CJD41_RS04865 PF07670 Nucleoside recognition CJD41_RS04875 PF06779 Uncharacterised MFS-type transporter YbfB CJD41_RS04880 PF04286 Protein of unknown function (DUF445) CJD41_RS04885 PF07690 Major Facilitator Superfamily CJD41_RS04890 PF04754 Putative transposase, YhgA-like CJD41_RS04905 PF01420 Type I restriction modification DNA specificity domain CJD41_RS04910 PF02384 N-6 DNA Methylase CJD41_RS04920 PF12161 HsdM N-terminal domain CJD41_RS04920 PF02384 N-6 DNA Methylase CJD41_RS04950 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJD41_RS04950 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJD41_RS04955 PF04328 Selenoprotein, putative CJD41_RS04965 PF02203 Tar ligand binding domain homologue CJD41_RS04965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJD41_RS04965 PF00672 HAMP domain CJD41_RS04970 PF00158 Sigma-54 interaction domain CJD41_RS04970 PF00874 PRD domain CJD41_RS04980 PF03830 PTS system sorbose subfamily IIB component CJD41_RS04985 PF03609 PTS system sorbose-specific iic component CJD41_RS04990 PF03613 PTS system mannose/fructose/sorbose family IID component CJD41_RS04995 PF01380 SIS domain CJD41_RS05005 PF00884 Sulfatase CJD41_RS05010 PF10696 Protein of unknown function (DUF2501) CJD41_RS05015 PF01695 IstB-like ATP binding protein CJD41_RS05020 PF17948 DnaT DNA-binding domain CJD41_RS05025 PF12821 Threonine/Serine exporter, ThrE CJD41_RS05030 PF06738 Putative threonine/serine exporter CJD41_RS05035 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS05040 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS05045 PF04073 Aminoacyl-tRNA editing domain CJD41_RS05050 PF11575 FhuF 2Fe-2S C-terminal domain CJD41_RS05050 PF06276 Ferric iron reductase FhuF-like transporter CJD41_RS05055 PF05230 MASE2 domain CJD41_RS05055 PF00990 Diguanylate cyclase, GGDEF domain CJD41_RS05060 PF07256 Protein of unknown function (DUF1435) CJD41_RS05075 PF05175 Methyltransferase small domain CJD41_RS05075 PF08468 Methyltransferase small domain N-terminal CJD41_RS05080 PF03603 DNA polymerase III psi subunit CJD41_RS05085 PF00583 Acetyltransferase (GNAT) family CJD41_RS05090 PF13419 Haloacid dehalogenase-like hydrolase CJD41_RS05095 PF00009 Elongation factor Tu GTP binding domain CJD41_RS05095 PF03144 Elongation factor Tu domain 2 CJD41_RS05095 PF16658 Class II release factor RF3, C-terminal domain CJD41_RS05100 PF04972 BON domain CJD41_RS05105 PF07043 Protein of unknown function (DUF1328) CJD41_RS05110 PF01734 Patatin-like phospholipase CJD41_RS05115 PF01026 TatD related DNase CJD41_RS05120 PF04055 Radical SAM superfamily CJD41_RS05130 PF01791 DeoC/LacD family aldolase CJD41_RS05140 PF01676 Metalloenzyme superfamily CJD41_RS05145 PF01048 Phosphorylase superfamily CJD41_RS05150 PF07804 HipA-like C-terminal domain CJD41_RS05155 PF03099 Biotin/lipoate A/B protein ligase family CJD41_RS05155 PF10437 Bacterial lipoate protein ligase C-terminus CJD41_RS05160 PF10144 Bacterial virulence factor haemolysin CJD41_RS05170 PF18429 Domain of unknown function (DUF5609) CJD41_RS05175 PF18073 Rubredoxin metal binding domain CJD41_RS05180 PF13521 AAA domain CJD41_RS05180 PF01381 Helix-turn-helix CJD41_RS05185 PF00005 ABC transporter CJD41_RS05185 PF12848 ABC transporter CJD41_RS05190 PF14718 Soluble lytic murein transglycosylase L domain CJD41_RS05190 PF01464 Transglycosylase SLT domain CJD41_RS05195 PF01371 Trp repressor protein CJD41_RS05200 PF01931 Protein of unknown function DUF84 CJD41_RS05210 PF06445 GyrI-like small molecule binding domain CJD41_RS05210 PF12833 Helix-turn-helix domain CJD41_RS05215 PF05981 CreA protein CJD41_RS05220 PF00072 Response regulator receiver domain CJD41_RS05220 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS05225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS05225 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS05225 PF00672 HAMP domain CJD41_RS05230 PF06123 Inner membrane protein CreD CJD41_RS05245 PF13953 PapC C-terminal domain CJD41_RS05245 PF13954 PapC N-terminal domain CJD41_RS05245 PF00577 Outer membrane usher protein CJD41_RS05260 PF15977 Winged helix-turn-helix DNA binding CJD41_RS05270 PF00072 Response regulator receiver domain CJD41_RS05270 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS05280 PF00588 SpoU rRNA Methylase family CJD41_RS05290 PF00696 Amino acid kinase family CJD41_RS05290 PF01842 ACT domain CJD41_RS05290 PF13840 ACT domain CJD41_RS05290 PF00742 Homoserine dehydrogenase CJD41_RS05290 PF03447 Homoserine dehydrogenase, NAD binding domain CJD41_RS05295 PF00288 GHMP kinases N terminal domain CJD41_RS05295 PF08544 GHMP kinases C terminal CJD41_RS05300 PF14821 Threonine synthase N terminus CJD41_RS05300 PF00291 Pyridoxal-phosphate dependent enzyme CJD41_RS05305 PF03883 Peroxide stress protein YaaA CJD41_RS05310 PF01235 Sodium:alanine symporter family CJD41_RS05315 PF00923 Transaldolase/Fructose-6-phosphate aldolase CJD41_RS05320 PF00994 Probable molybdopterin binding domain CJD41_RS05325 PF01184 GPR1/FUN34/yaaH family CJD41_RS05330 PF13099 Domain of unknown function (DUF3944) CJD41_RS05330 PF03981 Ubiquinol-cytochrome C chaperone CJD41_RS05335 PF10807 Protein of unknown function (DUF2541) CJD41_RS05340 PF00012 Hsp70 protein CJD41_RS05345 PF00226 DnaJ domain CJD41_RS05345 PF01556 DnaJ C terminal domain CJD41_RS05345 PF00684 DnaJ central domain CJD41_RS05350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS05350 PF03466 LysR substrate binding domain CJD41_RS05370 PF00704 Glycosyl hydrolases family 18 CJD41_RS05385 PF00419 Fimbrial protein CJD41_RS05390 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CJD41_RS05390 PF02753 Pili assembly chaperone PapD, C-terminal domain CJD41_RS05395 PF00577 Outer membrane usher protein CJD41_RS05395 PF13954 PapC N-terminal domain CJD41_RS05395 PF13953 PapC C-terminal domain CJD41_RS05400 PF00419 Fimbrial protein CJD41_RS05405 PF00419 Fimbrial protein CJD41_RS05410 PF16970 Type-1 fimbrial protein, A CJD41_RS05415 PF02753 Pili assembly chaperone PapD, C-terminal domain CJD41_RS05415 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CJD41_RS05435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS05435 PF03466 LysR substrate binding domain CJD41_RS05450 PF02872 5'-nucleotidase, C-terminal domain CJD41_RS05450 PF00149 Calcineurin-like phosphoesterase CJD41_RS05460 PF16385 Domain of unknown function CJD41_RS05460 PF00884 Sulfatase CJD41_RS05465 PF13186 Iron-sulfur cluster-binding domain CJD41_RS05465 PF04055 Radical SAM superfamily CJD41_RS05480 PF06965 Na+/H+ antiporter 1 CJD41_RS05485 PF03466 LysR substrate binding domain CJD41_RS05485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS05500 PF01649 Ribosomal protein S20 CJD41_RS05505 PF10837 Protein of unknown function (DUF2575) CJD41_RS05510 PF06574 FAD synthetase CJD41_RS05510 PF01687 Riboflavin kinase CJD41_RS05515 PF06827 Zinc finger found in FPG and IleRS CJD41_RS05515 PF00133 tRNA synthetases class I (I, L, M and V) CJD41_RS05515 PF08264 Anticodon-binding domain of tRNA CJD41_RS05520 PF01252 Signal peptidase (SPase) II CJD41_RS05525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJD41_RS05530 PF02401 LytB protein CJD41_RS05540 PF01156 Inosine-uridine preferring nucleoside hydrolase CJD41_RS05545 PF12431 Transcriptional regulator CJD41_RS05545 PF00072 Response regulator receiver domain CJD41_RS05550 PF17203 Single cache domain 3 CJD41_RS05550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS05560 PF02436 Conserved carboxylase domain CJD41_RS05560 PF00682 HMGL-like CJD41_RS05560 PF00364 Biotin-requiring enzyme CJD41_RS05565 PF04277 Oxaloacetate decarboxylase, gamma chain CJD41_RS05570 PF03390 2-hydroxycarboxylate transporter family CJD41_RS05575 PF08218 Citrate lyase ligase C-terminal domain CJD41_RS05575 PF00583 Acetyltransferase (GNAT) family CJD41_RS05580 PF06857 Malonate decarboxylase delta subunit (MdcD) CJD41_RS05590 PF04223 Citrate lyase, alpha subunit (CitF) CJD41_RS05595 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CJD41_RS05600 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CJD41_RS05605 PF01113 Dihydrodipicolinate reductase, N-terminus CJD41_RS05605 PF05173 Dihydrodipicolinate reductase, C-terminus CJD41_RS05615 PF00117 Glutamine amidotransferase class-I CJD41_RS05615 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CJD41_RS05620 PF02142 MGS-like domain CJD41_RS05620 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CJD41_RS05620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJD41_RS05625 PF07180 CaiF/GrlA transcriptional regulator CJD41_RS05630 PF00132 Bacterial transferase hexapeptide (six repeats) CJD41_RS05635 PF00378 Enoyl-CoA hydratase/isomerase CJD41_RS05640 PF13193 AMP-binding enzyme C-terminal domain CJD41_RS05640 PF00501 AMP-binding enzyme CJD41_RS05645 PF02515 CoA-transferase family III CJD41_RS05650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJD41_RS05650 PF02770 Acyl-CoA dehydrogenase, middle domain CJD41_RS05650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJD41_RS05655 PF02028 BCCT, betaine/carnitine/choline family transporter CJD41_RS05660 PF01012 Electron transfer flavoprotein domain CJD41_RS05665 PF01012 Electron transfer flavoprotein domain CJD41_RS05665 PF00766 Electron transfer flavoprotein FAD-binding domain CJD41_RS05670 PF01494 FAD binding domain CJD41_RS05680 PF00083 Sugar (and other) transporter CJD41_RS05685 PF06004 Bacterial protein of unknown function (DUF903) CJD41_RS05715 PF02525 Flavodoxin-like fold CJD41_RS05720 PF00999 Sodium/hydrogen exchanger family CJD41_RS05720 PF02254 TrkA-N domain CJD41_RS05730 PF00186 Dihydrofolate reductase CJD41_RS05735 PF00149 Calcineurin-like phosphoesterase CJD41_RS05740 PF04379 ApaG domain CJD41_RS05745 PF00398 Ribosomal RNA adenine dimethylase CJD41_RS05750 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CJD41_RS05755 PF00639 PPIC-type PPIASE domain CJD41_RS05755 PF09312 SurA N-terminal domain CJD41_RS05760 PF03968 OstA-like protein CJD41_RS05760 PF04453 LPS transport system D CJD41_RS05765 PF05099 Tellurite resistance protein TerB CJD41_RS05765 PF00226 DnaJ domain CJD41_RS05770 PF00849 RNA pseudouridylate synthase CJD41_RS05775 PF12137 RNA polymerase recycling family C-terminal CJD41_RS05775 PF18337 RapA N-terminal Tudor like domain CJD41_RS05775 PF18339 RapA N-terminal Tudor like domain 1 CJD41_RS05775 PF00271 Helicase conserved C-terminal domain CJD41_RS05775 PF00176 SNF2 family N-terminal domain CJD41_RS05785 PF00136 DNA polymerase family B CJD41_RS05785 PF03104 DNA polymerase family B, exonuclease domain CJD41_RS05805 PF00596 Class II Aldolase and Adducin N-terminal domain CJD41_RS05810 PF11762 L-arabinose isomerase C-terminal domain CJD41_RS05810 PF02610 L-arabinose isomerase CJD41_RS05815 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJD41_RS05820 PF12833 Helix-turn-helix domain CJD41_RS05820 PF02311 AraC-like ligand binding domain CJD41_RS05825 PF09335 SNARE associated Golgi protein CJD41_RS05830 PF00005 ABC transporter CJD41_RS05835 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS05845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD41_RS05845 PF12793 Sugar transport-related sRNA regulator N-term CJD41_RS05860 PF00694 Aconitase C-terminal domain CJD41_RS05865 PF00330 Aconitase family (aconitate hydratase) CJD41_RS05870 PF00180 Isocitrate/isopropylmalate dehydrogenase CJD41_RS05880 PF08054 Leucine operon leader peptide CJD41_RS05885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS05885 PF03466 LysR substrate binding domain CJD41_RS05895 PF10369 Small subunit of acetolactate synthase CJD41_RS05900 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CJD41_RS05900 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS05905 PF02381 MraZ protein, putative antitoxin-like CJD41_RS05910 PF01795 MraW methylase family CJD41_RS05915 PF04999 Cell division protein FtsL CJD41_RS05920 PF00905 Penicillin binding protein transpeptidase domain CJD41_RS05920 PF03717 Penicillin-binding Protein dimerisation domain CJD41_RS05925 PF01225 Mur ligase family, catalytic domain CJD41_RS05925 PF02875 Mur ligase family, glutamate ligase domain CJD41_RS05925 PF08245 Mur ligase middle domain CJD41_RS05930 PF01225 Mur ligase family, catalytic domain CJD41_RS05930 PF08245 Mur ligase middle domain CJD41_RS05930 PF02875 Mur ligase family, glutamate ligase domain CJD41_RS05935 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CJD41_RS05935 PF00953 Glycosyl transferase family 4 CJD41_RS05940 PF08245 Mur ligase middle domain CJD41_RS05940 PF02875 Mur ligase family, glutamate ligase domain CJD41_RS05945 PF01098 Cell cycle protein CJD41_RS05950 PF03033 Glycosyltransferase family 28 N-terminal domain CJD41_RS05950 PF04101 Glycosyltransferase family 28 C-terminal domain CJD41_RS05955 PF02875 Mur ligase family, glutamate ligase domain CJD41_RS05955 PF01225 Mur ligase family, catalytic domain CJD41_RS05955 PF08245 Mur ligase middle domain CJD41_RS05965 PF08478 POTRA domain, FtsQ-type CJD41_RS05965 PF03799 Cell division protein FtsQ CJD41_RS05970 PF02491 SHS2 domain inserted in FTSA CJD41_RS05975 PF12327 FtsZ family, C-terminal domain CJD41_RS05975 PF00091 Tubulin/FtsZ family, GTPase domain CJD41_RS05980 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CJD41_RS05985 PF06558 Secretion monitor precursor protein (SecM) CJD41_RS05990 PF07517 SecA DEAD-like domain CJD41_RS05990 PF02810 SEC-C motif CJD41_RS05990 PF01043 SecA preprotein cross-linking domain CJD41_RS05990 PF07516 SecA Wing and Scaffold domain CJD41_RS05995 PF00293 NUDIX domain CJD41_RS06000 PF00248 Aldo/keto reductase family CJD41_RS06005 PF03466 LysR substrate binding domain CJD41_RS06005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS06010 PF03884 DNA gyrase inhibitor YacG CJD41_RS06015 PF07072 Cell division protein CJD41_RS06020 PF01121 Dephospho-CoA kinase CJD41_RS06025 PF00478 IMP dehydrogenase / GMP reductase domain CJD41_RS06030 PF00482 Type II secretion system (T2SS), protein F CJD41_RS06035 PF00437 Type II/IV secretion system protein CJD41_RS06035 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CJD41_RS06040 PF07963 Prokaryotic N-terminal methylation motif CJD41_RS06050 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CJD41_RS06050 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CJD41_RS06055 PF01510 N-acetylmuramoyl-L-alanine amidase CJD41_RS06060 PF17113 Regulatory signalling modulator protein AmpE CJD41_RS06065 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain CJD41_RS06065 PF04616 Glycosyl hydrolases family 43 CJD41_RS06075 PF00324 Amino acid permease CJD41_RS06080 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS06080 PF07729 FCD domain CJD41_RS06085 PF00456 Transketolase, thiamine diphosphate binding domain CJD41_RS06085 PF17831 Pyruvate dehydrogenase E1 component middle domain CJD41_RS06090 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJD41_RS06090 PF00364 Biotin-requiring enzyme CJD41_RS06090 PF02817 e3 binding domain CJD41_RS06095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJD41_RS06095 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS06115 PF00330 Aconitase family (aconitate hydratase) CJD41_RS06115 PF06434 Aconitate hydratase 2 N-terminus CJD41_RS06115 PF11791 Aconitate B N-terminal domain CJD41_RS06130 PF06062 Uncharacterised protein family (UPF0231) CJD41_RS06135 PF03812 2-keto-3-deoxygluconate permease CJD41_RS06140 PF07005 Sugar-binding N-terminal domain CJD41_RS06140 PF17042 Nucleotide-binding C-terminal domain CJD41_RS06145 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CJD41_RS06150 PF08220 DeoR-like helix-turn-helix domain CJD41_RS06150 PF00455 DeoR C terminal sensor domain CJD41_RS06155 PF02675 S-adenosylmethionine decarboxylase CJD41_RS06160 PF17284 Spermidine synthase tetramerisation domain CJD41_RS06165 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CJD41_RS06170 PF07732 Multicopper oxidase CJD41_RS06170 PF07731 Multicopper oxidase CJD41_RS06170 PF00394 Multicopper oxidase CJD41_RS06175 PF01011 PQQ enzyme repeat CJD41_RS06180 PF00156 Phosphoribosyl transferase domain CJD41_RS06185 PF00484 Carbonic anhydrase CJD41_RS06190 PF00005 ABC transporter CJD41_RS06195 PF01061 ABC-2 type transporter CJD41_RS06200 PF00419 Fimbrial protein CJD41_RS06210 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CJD41_RS06210 PF02753 Pili assembly chaperone PapD, C-terminal domain CJD41_RS06220 PF03610 PTS system fructose IIA component CJD41_RS06225 PF01522 Polysaccharide deacetylase CJD41_RS06230 PF02261 Aspartate decarboxylase CJD41_RS06235 PF02569 Pantoate-beta-alanine ligase CJD41_RS06240 PF02548 Ketopantoate hydroxymethyltransferase CJD41_RS06245 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CJD41_RS06250 PF01743 Poly A polymerase head domain CJD41_RS06250 PF12626 Polymerase A arginine-rich C-terminus CJD41_RS06250 PF12627 Probable RNA and SrmB- binding site of polymerase A CJD41_RS06255 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJD41_RS06260 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJD41_RS06265 PF03749 Sugar fermentation stimulation protein RE domain CJD41_RS06265 PF17746 SfsA N-terminal OB domain CJD41_RS06270 PF02834 LigT like Phosphoesterase CJD41_RS06275 PF00270 DEAD/DEAH box helicase CJD41_RS06275 PF04408 Helicase associated domain (HA2) CJD41_RS06275 PF00271 Helicase conserved C-terminal domain CJD41_RS06275 PF08482 ATP-dependent helicase C-terminal CJD41_RS06280 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CJD41_RS06280 PF00905 Penicillin binding protein transpeptidase domain CJD41_RS06280 PF14814 Bifunctional transglycosylase second domain CJD41_RS06280 PF00912 Transglycosylase CJD41_RS06285 PF00593 TonB dependent receptor CJD41_RS06285 PF07715 TonB-dependent Receptor Plug Domain CJD41_RS06290 PF00005 ABC transporter CJD41_RS06295 PF01497 Periplasmic binding protein CJD41_RS06300 PF01032 FecCD transport family CJD41_RS06325 PF00419 Fimbrial protein CJD41_RS06335 PF00419 Fimbrial protein CJD41_RS06340 PF11245 Protein of unknown function (DUF2544) CJD41_RS06345 PF00202 Aminotransferase class-III CJD41_RS06350 PF00654 Voltage gated chloride channel CJD41_RS06355 PF01521 Iron-sulphur cluster biosynthesis CJD41_RS06360 PF03458 UPF0126 domain CJD41_RS06365 PF01497 Periplasmic binding protein CJD41_RS06370 PF01048 Phosphorylase superfamily CJD41_RS06375 PF01966 HD domain CJD41_RS06375 PF13286 Phosphohydrolase-associated domain CJD41_RS06380 PF00595 PDZ domain CJD41_RS06385 PF05651 Putative sugar diacid recognition CJD41_RS06385 PF17853 GGDEF-like domain CJD41_RS06385 PF13556 PucR C-terminal helix-turn-helix domain CJD41_RS06390 PF11944 Protein of unknown function (DUF3461) CJD41_RS06395 PF00083 Sugar (and other) transporter CJD41_RS06395 PF07690 Major Facilitator Superfamily CJD41_RS06400 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CJD41_RS06400 PF14602 Hexapeptide repeat of succinyl-transferase CJD41_RS06400 PF00132 Bacterial transferase hexapeptide (six repeats) CJD41_RS06405 PF01842 ACT domain CJD41_RS06405 PF01909 Nucleotidyltransferase domain CJD41_RS06405 PF01966 HD domain CJD41_RS06405 PF08335 GlnD PII-uridylyltransferase CJD41_RS06415 PF00557 Metallopeptidase family M24 CJD41_RS06420 PF00318 Ribosomal protein S2 CJD41_RS06425 PF00889 Elongation factor TS CJD41_RS06430 PF00696 Amino acid kinase family CJD41_RS06435 PF01765 Ribosome recycling factor CJD41_RS06440 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CJD41_RS06440 PF13288 DXP reductoisomerase C-terminal domain CJD41_RS06440 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CJD41_RS06450 PF01255 Putative undecaprenyl diphosphate synthase CJD41_RS06460 PF17820 PDZ domain CJD41_RS06460 PF02163 Peptidase family M50 CJD41_RS06465 PF01103 Surface antigen CJD41_RS06465 PF07244 Surface antigen variable number repeat CJD41_RS06470 PF03938 Outer membrane protein (OmpH-like) CJD41_RS06475 PF00132 Bacterial transferase hexapeptide (six repeats) CJD41_RS06475 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CJD41_RS06480 PF07977 FabA-like domain CJD41_RS06485 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CJD41_RS06485 PF00132 Bacterial transferase hexapeptide (six repeats) CJD41_RS06490 PF02684 Lipid-A-disaccharide synthetase CJD41_RS06495 PF01351 Ribonuclease HII CJD41_RS06500 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJD41_RS06500 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJD41_RS06500 PF01336 OB-fold nucleic acid binding domain CJD41_RS06500 PF14579 Helix-hairpin-helix motif CJD41_RS06500 PF02811 PHP domain CJD41_RS06505 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CJD41_RS06510 PF18416 N-acetylglucosamine binding protein domain 2 CJD41_RS06510 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CJD41_RS06515 PF01276 Orn/Lys/Arg decarboxylase, major domain CJD41_RS06515 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CJD41_RS06515 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CJD41_RS06520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJD41_RS06525 PF01171 PP-loop family CJD41_RS06525 PF09179 TilS substrate binding domain CJD41_RS06525 PF11734 TilS substrate C-terminal domain CJD41_RS06530 PF07073 Modulator of Rho-dependent transcription termination (ROF) CJD41_RS06535 PF06786 Uncharacterised protein family (UPF0253) CJD41_RS06540 PF07152 YaeQ protein CJD41_RS06545 PF00472 RF-1 domain CJD41_RS06550 PF17185 NlpE C-terminal OB domain CJD41_RS06550 PF04170 NlpE N-terminal domain CJD41_RS06555 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJD41_RS06555 PF03129 Anticodon binding domain CJD41_RS06555 PF04073 Aminoacyl-tRNA editing domain CJD41_RS06560 PF18389 TrmO C-terminal domain CJD41_RS06560 PF01980 tRNA-methyltransferase O CJD41_RS06565 PF16358 RcsF lipoprotein CJD41_RS06570 PF03180 NLPA lipoprotein CJD41_RS06575 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS06580 PF00005 ABC transporter CJD41_RS06580 PF09383 NIL domain CJD41_RS06615 PF00083 Sugar (and other) transporter CJD41_RS06620 PF10043 Predicted periplasmic lipoprotein (DUF2279) CJD41_RS06625 PF13091 PLD-like domain CJD41_RS06630 PF13380 CoA binding domain CJD41_RS06630 PF13607 Succinyl-CoA ligase like flavodoxin domain CJD41_RS06630 PF00583 Acetyltransferase (GNAT) family CJD41_RS06635 PF03942 DTW domain CJD41_RS06645 PF00588 SpoU rRNA Methylase family CJD41_RS06645 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJD41_RS06650 PF03167 Uracil DNA glycosylase superfamily CJD41_RS06655 PF01228 Glycine radical CJD41_RS06665 PF03466 LysR substrate binding domain CJD41_RS06665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS06670 PF00271 Helicase conserved C-terminal domain CJD41_RS06670 PF00270 DEAD/DEAH box helicase CJD41_RS06675 PF05175 Methyltransferase small domain CJD41_RS06680 PF00890 FAD binding domain CJD41_RS06680 PF02910 Fumarate reductase flavoprotein C-term CJD41_RS06695 PF03873 Anti sigma-E protein RseA, C-terminal domain CJD41_RS06695 PF03872 Anti sigma-E protein RseA, N-terminal domain CJD41_RS06700 PF03888 MucB/RseB N-terminal domain CJD41_RS06700 PF17188 MucB/RseB C-terminal domain CJD41_RS06715 PF00009 Elongation factor Tu GTP binding domain CJD41_RS06715 PF03144 Elongation factor Tu domain 2 CJD41_RS06715 PF00679 Elongation factor G C-terminus CJD41_RS06715 PF06421 GTP-binding protein LepA C-terminus CJD41_RS06720 PF10502 Signal peptidase, peptidase S26 CJD41_RS06725 PF00035 Double-stranded RNA binding motif CJD41_RS06725 PF14622 Ribonuclease-III-like CJD41_RS06730 PF07650 KH domain CJD41_RS06730 PF01926 50S ribosome-binding GTPase CJD41_RS06735 PF11967 Recombination protein O N terminal CJD41_RS06735 PF02565 Recombination protein O C terminal CJD41_RS06740 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CJD41_RS06745 PF01648 4'-phosphopantetheinyl transferase superfamily CJD41_RS06750 PF12838 4Fe-4S dicluster domain CJD41_RS06755 PF03466 LysR substrate binding domain CJD41_RS06755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS06760 PF07690 Major Facilitator Superfamily CJD41_RS06765 PF02558 Ketopantoate reductase PanE/ApbA CJD41_RS06765 PF08546 Ketopantoate reductase PanE/ApbA C terminal CJD41_RS06770 PF01380 SIS domain CJD41_RS06770 PF01418 Helix-turn-helix domain, rpiR family CJD41_RS06775 PF01380 SIS domain CJD41_RS06780 PF00367 phosphotransferase system, EIIB CJD41_RS06780 PF02378 Phosphotransferase system, EIIC CJD41_RS06790 PF14437 MafB19-like deaminase CJD41_RS06795 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJD41_RS06795 PF01464 Transglycosylase SLT domain CJD41_RS06805 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CJD41_RS06805 PF02769 AIR synthase related protein, C-terminal domain CJD41_RS06805 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CJD41_RS06815 PF13942 YfhG lipoprotein CJD41_RS06820 PF00158 Sigma-54 interaction domain CJD41_RS06820 PF00072 Response regulator receiver domain CJD41_RS06825 PF00543 Nitrogen regulatory protein P-II CJD41_RS06830 PF00854 POT family CJD41_RS06835 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CJD41_RS06835 PF01276 Orn/Lys/Arg decarboxylase, major domain CJD41_RS06835 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CJD41_RS06840 PF13520 Amino acid permease CJD41_RS06845 PF18500 CadC C-terminal domain 1 CJD41_RS06845 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS06850 PF00175 Oxidoreductase NAD-binding domain CJD41_RS06850 PF00042 Globin CJD41_RS06850 PF00970 Oxidoreductase FAD-binding domain CJD41_RS06855 PF00464 Serine hydroxymethyltransferase CJD41_RS06860 PF12832 MFS_1 like family CJD41_RS06865 PF00874 PRD domain CJD41_RS06875 PF03824 High-affinity nickel-transport protein CJD41_RS06880 PF13187 4Fe-4S dicluster domain CJD41_RS06880 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJD41_RS06880 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJD41_RS06895 PF12146 Serine aminopeptidase, S33 CJD41_RS06900 PF00459 Inositol monophosphatase family CJD41_RS06905 PF00588 SpoU rRNA Methylase family CJD41_RS06910 PF02082 Transcriptional regulator CJD41_RS06915 PF00266 Aminotransferase class-V CJD41_RS06920 PF01592 NifU-like N terminal domain CJD41_RS06925 PF01521 Iron-sulphur cluster biosynthesis CJD41_RS06930 PF07743 HSCB C-terminal oligomerisation domain CJD41_RS06935 PF00012 Hsp70 protein CJD41_RS06940 PF00111 2Fe-2S iron-sulfur cluster binding domain CJD41_RS06945 PF04384 Iron-sulphur cluster assembly CJD41_RS06950 PF12404 Peptidase CJD41_RS06950 PF00883 Cytosol aminopeptidase family, catalytic domain CJD41_RS06955 PF07179 SseB protein N-terminal domain CJD41_RS06955 PF14581 SseB protein C-terminal domain CJD41_RS06975 PF00581 Rhodanese-like domain CJD41_RS06980 PF07678 A-macroglobulin TED domain CJD41_RS06980 PF01835 MG2 domain CJD41_RS06980 PF17962 Bacterial macroglobulin domain 6 CJD41_RS06980 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CJD41_RS06980 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CJD41_RS06980 PF00207 Alpha-2-macroglobulin family CJD41_RS06980 PF07703 Alpha-2-macroglobulin bait region domain CJD41_RS06980 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CJD41_RS06980 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CJD41_RS06985 PF06832 Penicillin-Binding Protein C-terminus Family CJD41_RS06985 PF00912 Transglycosylase CJD41_RS06985 PF00905 Penicillin binding protein transpeptidase domain CJD41_RS06990 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJD41_RS06990 PF01568 Molydopterin dinucleotide binding domain CJD41_RS06990 PF00384 Molybdopterin oxidoreductase CJD41_RS06995 PF13247 4Fe-4S dicluster domain CJD41_RS06995 PF12800 4Fe-4S binding domain CJD41_RS07010 PF00334 Nucleoside diphosphate kinase CJD41_RS07015 PF04055 Radical SAM superfamily CJD41_RS07020 PF13464 Domain of unknown function (DUF4115) CJD41_RS07025 PF04551 GcpE protein CJD41_RS07030 PF03129 Anticodon binding domain CJD41_RS07030 PF13393 Histidyl-tRNA synthetase CJD41_RS07035 PF09976 Tetratricopeptide repeat-like domain CJD41_RS07040 PF13360 PQQ-like domain CJD41_RS07045 PF01926 50S ribosome-binding GTPase CJD41_RS07045 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CJD41_RS07050 PF07191 zinc-ribbons CJD41_RS07055 PF11924 Inverse autotransporter, beta-domain CJD41_RS07055 PF02369 Bacterial Ig-like domain (group 1) CJD41_RS07055 PF02368 Bacterial Ig-like domain (group 2) CJD41_RS07055 PF07979 Intimin C-type lectin domain CJD41_RS07055 PF01476 LysM domain CJD41_RS07085 PF03797 Autotransporter beta-domain CJD41_RS07090 PF13742 OB-fold nucleic acid binding domain CJD41_RS07090 PF02601 Exonuclease VII, large subunit CJD41_RS07095 PF00571 CBS domain CJD41_RS07095 PF00478 IMP dehydrogenase / GMP reductase domain CJD41_RS07100 PF02540 NAD synthase CJD41_RS07100 PF00958 GMP synthase C terminal domain CJD41_RS07100 PF00117 Glutamine amidotransferase class-I CJD41_RS07120 PF11119 Protein of unknown function (DUF2633) CJD41_RS07135 PF02541 Ppx/GppA phosphatase family CJD41_RS07140 PF13090 Polyphosphate kinase C-terminal domain 2 CJD41_RS07140 PF02503 Polyphosphate kinase middle domain CJD41_RS07140 PF17941 Polyphosphate kinase C-terminal domain 1 CJD41_RS07140 PF13089 Polyphosphate kinase N-terminal domain CJD41_RS07145 PF00551 Formyl transferase CJD41_RS07150 PF02769 AIR synthase related protein, C-terminal domain CJD41_RS07150 PF00586 AIR synthase related protein, N-terminal domain CJD41_RS07165 PF00860 Permease family CJD41_RS07170 PF00308 Bacterial dnaA protein CJD41_RS07175 PF03960 ArsC family CJD41_RS07180 PF01435 Peptidase family M48 CJD41_RS07185 PF01594 AI-2E family transporter CJD41_RS07190 PF17853 GGDEF-like domain CJD41_RS07190 PF05651 Putative sugar diacid recognition CJD41_RS07190 PF13556 PucR C-terminal helix-turn-helix domain CJD41_RS07195 PF02447 GntP family permease CJD41_RS07200 PF02595 Glycerate kinase family CJD41_RS07205 PF00578 AhpC/TSA family CJD41_RS07210 PF01842 ACT domain CJD41_RS07215 PF00701 Dihydrodipicolinate synthetase family CJD41_RS07220 PF06804 NlpB/DapX lipoprotein CJD41_RS07225 PF01259 SAICAR synthetase CJD41_RS07230 PF04228 Putative neutral zinc metallopeptidase CJD41_RS07235 PF17176 tRNA-binding domain CJD41_RS07235 PF08351 Domain of unknown function (DUF1726) CJD41_RS07235 PF13718 GNAT acetyltransferase 2 CJD41_RS07235 PF05127 Helicase CJD41_RS07240 PF13980 Uncharacterised protein family (UPF0370) CJD41_RS07245 PF07687 Peptidase dimerisation domain CJD41_RS07245 PF01546 Peptidase family M20/M25/M40 CJD41_RS07250 PF03960 ArsC family CJD41_RS07265 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CJD41_RS07265 PF07730 Histidine kinase CJD41_RS07265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS07265 PF00672 HAMP domain CJD41_RS07275 PF13247 4Fe-4S dicluster domain CJD41_RS07275 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJD41_RS07275 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS07285 PF00293 NUDIX domain CJD41_RS07290 PF06674 Protein of unknown function (DUF1176) CJD41_RS07300 PF02779 Transketolase, pyrimidine binding domain CJD41_RS07300 PF02780 Transketolase, C-terminal domain CJD41_RS07300 PF00456 Transketolase, thiamine diphosphate binding domain CJD41_RS07315 PF03949 Malic enzyme, NAD binding domain CJD41_RS07315 PF00390 Malic enzyme, N-terminal domain CJD41_RS07315 PF01515 Phosphate acetyl/butaryl transferase CJD41_RS07320 PF00936 BMC domain CJD41_RS07325 PF10662 Ethanolamine utilisation - propanediol utilisation CJD41_RS07330 PF06249 Ethanolamine utilisation protein EutQ CJD41_RS07335 PF01923 Cobalamin adenosyltransferase CJD41_RS07340 PF01515 Phosphate acetyl/butaryl transferase CJD41_RS07345 PF00936 BMC domain CJD41_RS07350 PF03319 Ethanolamine utilisation protein EutN/carboxysome CJD41_RS07355 PF00171 Aldehyde dehydrogenase family CJD41_RS07365 PF00465 Iron-containing alcohol dehydrogenase CJD41_RS07370 PF04346 Ethanolamine utilisation protein, EutH CJD41_RS07375 PF06277 Ethanolamine utilisation protein EutA CJD41_RS07380 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CJD41_RS07385 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CJD41_RS07390 PF00936 BMC domain CJD41_RS07395 PF16365 Ethanolamine utilization protein EutK C-terminus CJD41_RS07395 PF00936 BMC domain CJD41_RS07400 PF12833 Helix-turn-helix domain CJD41_RS07420 PF01520 N-acetylmuramoyl-L-alanine amidase CJD41_RS07425 PF00583 Acetyltransferase (GNAT) family CJD41_RS07430 PF11143 Protein of unknown function (DUF2919) CJD41_RS07440 PF04261 Dyp-type peroxidase family CJD41_RS07460 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS07465 PF00005 ABC transporter CJD41_RS07470 PF00291 Pyridoxal-phosphate dependent enzyme CJD41_RS07480 PF17263 Family of unknown function (DUF5329) CJD41_RS07485 PF00117 Glutamine amidotransferase class-I CJD41_RS07490 PF00155 Aminotransferase class I and II CJD41_RS07490 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS07495 PF08543 Phosphomethylpyrimidine kinase CJD41_RS07505 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CJD41_RS07510 PF05524 PEP-utilising enzyme, N-terminal CJD41_RS07510 PF02896 PEP-utilising enzyme, TIM barrel domain CJD41_RS07510 PF00391 PEP-utilising enzyme, mobile domain CJD41_RS07515 PF00381 PTS HPr component phosphorylation site CJD41_RS07520 PF00291 Pyridoxal-phosphate dependent enzyme CJD41_RS07530 PF04354 ZipA, C-terminal FtsZ-binding domain CJD41_RS07535 PF01653 NAD-dependent DNA ligase adenylation domain CJD41_RS07535 PF03120 NAD-dependent DNA ligase OB-fold domain CJD41_RS07535 PF00533 BRCA1 C Terminus (BRCT) domain CJD41_RS07535 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CJD41_RS07535 PF12826 Helix-hairpin-helix motif CJD41_RS07540 PF12843 Putative quorum-sensing-regulated virulence factor CJD41_RS07545 PF13593 SBF-like CPA transporter family (DUF4137) CJD41_RS07555 PF03502 Nucleoside-specific channel-forming protein, Tsx CJD41_RS07560 PF01048 Phosphorylase superfamily CJD41_RS07565 PF03825 Nucleoside H+ symporter CJD41_RS07575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS07575 PF03466 LysR substrate binding domain CJD41_RS07595 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJD41_RS07600 PF07037 Putative transcription regulator (DUF1323) CJD41_RS07605 PF07037 Putative transcription regulator (DUF1323) CJD41_RS07625 PF05231 MASE1 CJD41_RS07625 PF00563 EAL domain CJD41_RS07630 PF07670 Nucleoside recognition CJD41_RS07630 PF07662 Na+ dependent nucleoside transporter C-terminus CJD41_RS07630 PF01773 Na+ dependent nucleoside transporter N-terminus CJD41_RS07640 PF10697 Protein of unknown function (DUF2502) CJD41_RS07645 PF00248 Aldo/keto reductase family CJD41_RS07650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJD41_RS07650 PF00205 Thiamine pyrophosphate enzyme, central domain CJD41_RS07650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJD41_RS07655 PF00654 Voltage gated chloride channel CJD41_RS07660 PF02685 Glucokinase CJD41_RS07665 PF00155 Aminotransferase class I and II CJD41_RS07675 PF03279 Bacterial lipid A biosynthesis acyltransferase CJD41_RS07680 PF10810 Protein of unknown function (DUF2545) CJD41_RS07685 PF07690 Major Facilitator Superfamily CJD41_RS07700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS07700 PF00672 HAMP domain CJD41_RS07700 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS07705 PF02954 Bacterial regulatory protein, Fis family CJD41_RS07705 PF00072 Response regulator receiver domain CJD41_RS07705 PF14532 Sigma-54 interaction domain CJD41_RS07710 PF01278 Omptin family CJD41_RS07735 PF00535 Glycosyl transferase family 2 CJD41_RS07740 PF04138 GtrA-like protein CJD41_RS07760 PF01226 Formate/nitrite transporter CJD41_RS07765 PF04333 MlaA lipoprotein CJD41_RS07770 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CJD41_RS07775 PF04175 Protein of unknown function (DUF406) CJD41_RS07780 PF00108 Thiolase, N-terminal domain CJD41_RS07780 PF02803 Thiolase, C-terminal domain CJD41_RS07785 PF00378 Enoyl-CoA hydratase/isomerase CJD41_RS07785 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJD41_RS07785 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJD41_RS07790 PF00300 Histidine phosphatase superfamily (branch 1) CJD41_RS07795 PF01713 Smr domain CJD41_RS07800 PF05175 Methyltransferase small domain CJD41_RS07805 PF01264 Chorismate synthase CJD41_RS07810 PF03411 Penicillin-insensitive murein endopeptidase CJD41_RS07815 PF01925 Sulfite exporter TauE/SafE CJD41_RS07820 PF04315 Elongation factor P hydroxylase CJD41_RS07825 PF08891 YfcL protein CJD41_RS07830 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CJD41_RS07830 PF01266 FAD dependent oxidoreductase CJD41_RS07835 PF00109 Beta-ketoacyl synthase, N-terminal domain CJD41_RS07835 PF02801 Beta-ketoacyl synthase, C-terminal domain CJD41_RS07840 PF02517 CPBP intramembrane metalloprotease CJD41_RS07855 PF13693 Winged helix-turn-helix DNA-binding CJD41_RS07865 PF07690 Major Facilitator Superfamily CJD41_RS07875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJD41_RS07875 PF11890 Domain of unknown function (DUF3410) CJD41_RS07875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJD41_RS07880 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJD41_RS07880 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJD41_RS07885 PF01416 tRNA pseudouridine synthase CJD41_RS07890 PF09335 SNARE associated Golgi protein CJD41_RS07895 PF17848 Acetyl-coA carboxylase zinc finger domain CJD41_RS07895 PF01039 Carboxyl transferase domain CJD41_RS07900 PF08245 Mur ligase middle domain CJD41_RS07900 PF02875 Mur ligase family, glutamate ligase domain CJD41_RS07905 PF05036 Sporulation related domain CJD41_RS07910 PF02674 Colicin V production protein CJD41_RS07915 PF00156 Phosphoribosyl transferase domain CJD41_RS07925 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJD41_RS07925 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJD41_RS07935 PF01168 Alanine racemase, N-terminal domain CJD41_RS07940 PF00324 Amino acid permease CJD41_RS07945 PF02441 Flavoprotein CJD41_RS07955 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJD41_RS07965 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS07970 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS07975 PF00005 ABC transporter CJD41_RS07980 PF08338 Domain of unknown function (DUF1731) CJD41_RS07980 PF01370 NAD dependent epimerase/dehydratase family CJD41_RS07985 PF00043 Glutathione S-transferase, C-terminal domain CJD41_RS07985 PF02798 Glutathione S-transferase, N-terminal domain CJD41_RS07990 PF02798 Glutathione S-transferase, N-terminal domain CJD41_RS07990 PF14834 Glutathione S-transferase, C-terminal domain CJD41_RS07995 PF12850 Calcineurin-like phosphoesterase superfamily domain CJD41_RS08000 PF00293 NUDIX domain CJD41_RS08005 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS08015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJD41_RS08025 PF03611 PTS system sugar-specific permease component CJD41_RS08030 PF00456 Transketolase, thiamine diphosphate binding domain CJD41_RS08035 PF02780 Transketolase, C-terminal domain CJD41_RS08035 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CJD41_RS08035 PF02779 Transketolase, pyrimidine binding domain CJD41_RS08040 PF03606 C4-dicarboxylate anaerobic carrier CJD41_RS08045 PF07085 DRTGG domain CJD41_RS08045 PF01515 Phosphate acetyl/butaryl transferase CJD41_RS08050 PF00871 Acetokinase family CJD41_RS08055 PF04217 Protein of unknown function, DUF412 CJD41_RS08060 PF03887 YfbU domain CJD41_RS08065 PF13419 Haloacid dehalogenase-like hydrolase CJD41_RS08070 PF03600 Citrate transporter CJD41_RS08070 PF02080 TrkA-C domain CJD41_RS08080 PF00155 Aminotransferase class I and II CJD41_RS08090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS08090 PF03466 LysR substrate binding domain CJD41_RS08100 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CJD41_RS08105 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJD41_RS08110 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CJD41_RS08110 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CJD41_RS08120 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CJD41_RS08120 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CJD41_RS08120 PF10531 SLBB domain CJD41_RS08125 PF01568 Molydopterin dinucleotide binding domain CJD41_RS08125 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJD41_RS08125 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJD41_RS08125 PF00384 Molybdopterin oxidoreductase CJD41_RS08130 PF00146 NADH dehydrogenase CJD41_RS08135 PF12838 4Fe-4S dicluster domain CJD41_RS08140 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CJD41_RS08145 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CJD41_RS08150 PF00361 Proton-conducting membrane transporter CJD41_RS08150 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CJD41_RS08160 PF00361 Proton-conducting membrane transporter CJD41_RS08165 PF00361 Proton-conducting membrane transporter CJD41_RS08175 PF12450 von Willebrand factor CJD41_RS08175 PF00092 von Willebrand factor type A domain CJD41_RS08175 PF12034 Domain of unknown function (DUF3520) CJD41_RS08180 PF00072 Response regulator receiver domain CJD41_RS08180 PF01584 CheW-like domain CJD41_RS08190 PF13673 Acetyltransferase (GNAT) domain CJD41_RS08195 PF05957 Bacterial protein of unknown function (DUF883) CJD41_RS08200 PF00425 chorismate binding enzyme CJD41_RS08205 PF16582 Middle domain of thiamine pyrophosphate CJD41_RS08205 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJD41_RS08205 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJD41_RS08210 PF12697 Alpha/beta hydrolase family CJD41_RS08215 PF00378 Enoyl-CoA hydratase/isomerase CJD41_RS08220 PF13378 Enolase C-terminal domain-like CJD41_RS08225 PF00501 AMP-binding enzyme CJD41_RS08225 PF13193 AMP-binding enzyme C-terminal domain CJD41_RS08240 PF00892 EamA-like transporter family CJD41_RS08245 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CJD41_RS08250 PF01522 Polysaccharide deacetylase CJD41_RS08255 PF02911 Formyl transferase, C-terminal domain CJD41_RS08255 PF01370 NAD dependent epimerase/dehydratase family CJD41_RS08255 PF00551 Formyl transferase CJD41_RS08260 PF00535 Glycosyl transferase family 2 CJD41_RS08265 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJD41_RS08270 PF00300 Histidine phosphatase superfamily (branch 1) CJD41_RS08275 PF00293 NUDIX domain CJD41_RS08280 PF07437 YfaZ precursor CJD41_RS08285 PF00994 Probable molybdopterin binding domain CJD41_RS08290 PF01614 Bacterial transcriptional regulator CJD41_RS08290 PF09339 IclR helix-turn-helix domain CJD41_RS08295 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJD41_RS08295 PF13378 Enolase C-terminal domain-like CJD41_RS08300 PF07690 Major Facilitator Superfamily CJD41_RS08305 PF03328 HpcH/HpaI aldolase/citrate lyase family CJD41_RS08310 PF00994 Probable molybdopterin binding domain CJD41_RS08325 PF02754 Cysteine-rich domain CJD41_RS08325 PF13183 4Fe-4S dicluster domain CJD41_RS08330 PF00890 FAD binding domain CJD41_RS08335 PF01266 FAD dependent oxidoreductase CJD41_RS08335 PF04324 BFD-like [2Fe-2S] binding domain CJD41_RS08340 PF07690 Major Facilitator Superfamily CJD41_RS08345 PF03009 Glycerophosphoryl diester phosphodiesterase family CJD41_RS08350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS08350 PF03466 LysR substrate binding domain CJD41_RS08360 PF00111 2Fe-2S iron-sulfur cluster binding domain CJD41_RS08365 PF00268 Ribonucleotide reductase, small chain CJD41_RS08370 PF00317 Ribonucleotide reductase, all-alpha domain CJD41_RS08370 PF02867 Ribonucleotide reductase, barrel domain CJD41_RS08370 PF03477 ATP cone domain CJD41_RS08390 PF13378 Enolase C-terminal domain-like CJD41_RS08390 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJD41_RS08395 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJD41_RS08395 PF13378 Enolase C-terminal domain-like CJD41_RS08405 PF03989 DNA gyrase C-terminal domain, beta-propeller CJD41_RS08405 PF00521 DNA gyrase/topoisomerase IV, subunit A CJD41_RS08415 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS08415 PF00072 Response regulator receiver domain CJD41_RS08420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS08420 PF16359 RcsD-ABL domain CJD41_RS08420 PF01627 Hpt domain CJD41_RS08425 PF00267 Gram-negative porin CJD41_RS08430 PF02424 ApbE family CJD41_RS08435 PF02805 Metal binding domain of Ada CJD41_RS08435 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJD41_RS08435 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJD41_RS08435 PF12833 Helix-turn-helix domain CJD41_RS08440 PF13532 2OG-Fe(II) oxygenase superfamily CJD41_RS08445 PF00005 ABC transporter CJD41_RS08450 PF03974 Ecotin CJD41_RS08455 PF00037 4Fe-4S binding domain CJD41_RS08455 PF12800 4Fe-4S binding domain CJD41_RS08455 PF13187 4Fe-4S dicluster domain CJD41_RS08460 PF03927 NapD protein CJD41_RS08465 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJD41_RS08465 PF01568 Molydopterin dinucleotide binding domain CJD41_RS08465 PF00384 Molybdopterin oxidoreductase CJD41_RS08470 PF12800 4Fe-4S binding domain CJD41_RS08470 PF12838 4Fe-4S dicluster domain CJD41_RS08475 PF13237 4Fe-4S dicluster domain CJD41_RS08475 PF12801 4Fe-4S binding domain CJD41_RS08480 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CJD41_RS08485 PF03264 NapC/NirT cytochrome c family, N-terminal region CJD41_RS08490 PF00005 ABC transporter CJD41_RS08495 PF03379 CcmB protein CJD41_RS08500 PF01578 Cytochrome C assembly protein CJD41_RS08505 PF04995 Heme exporter protein D (CcmD) CJD41_RS08510 PF03100 CcmE CJD41_RS08515 PF01578 Cytochrome C assembly protein CJD41_RS08515 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CJD41_RS08520 PF08534 Redoxin CJD41_RS08525 PF03918 Cytochrome C biogenesis protein CJD41_RS08530 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS08530 PF00072 Response regulator receiver domain CJD41_RS08575 PF00884 Sulfatase CJD41_RS08575 PF11893 Domain of unknown function (DUF3413) CJD41_RS08580 PF07208 Protein of unknown function (DUF1414) CJD41_RS08585 PF04245 37-kD nucleoid-associated bacterial protein CJD41_RS08595 PF01386 Ribosomal L25p family CJD41_RS08600 PF04851 Type III restriction enzyme, res subunit CJD41_RS08600 PF00271 Helicase conserved C-terminal domain CJD41_RS08605 PF01479 S4 domain CJD41_RS08605 PF00849 RNA pseudouridylate synthase CJD41_RS08610 PF07690 Major Facilitator Superfamily CJD41_RS08615 PF13989 YejG-like protein CJD41_RS08620 PF00005 ABC transporter CJD41_RS08620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJD41_RS08625 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS08625 PF12911 N-terminal TM domain of oligopeptide transport permease C CJD41_RS08630 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS08635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD41_RS08640 PF12792 CSS motif domain associated with EAL CJD41_RS08640 PF00563 EAL domain CJD41_RS08650 PF00877 NlpC/P60 family CJD41_RS08665 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJD41_RS08665 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJD41_RS08670 PF08207 Elongation factor P (EF-P) KOW-like domain CJD41_RS08670 PF01132 Elongation factor P (EF-P) OB domain CJD41_RS08670 PF09285 Elongation factor P, C-terminal CJD41_RS08680 PF03692 Putative zinc- or iron-chelating domain CJD41_RS08695 PF07690 Major Facilitator Superfamily CJD41_RS08700 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJD41_RS08700 PF00381 PTS HPr component phosphorylation site CJD41_RS08705 PF00294 pfkB family carbohydrate kinase CJD41_RS08710 PF02378 Phosphotransferase system, EIIC CJD41_RS08710 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJD41_RS08715 PF01261 Xylose isomerase-like TIM barrel CJD41_RS08720 PF03601 Conserved hypothetical protein 698 CJD41_RS08725 PF03466 LysR substrate binding domain CJD41_RS08725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS08730 PF00324 Amino acid permease CJD41_RS08740 PF07715 TonB-dependent Receptor Plug Domain CJD41_RS08740 PF00593 TonB dependent receptor CJD41_RS08745 PF07690 Major Facilitator Superfamily CJD41_RS08750 PF18429 Domain of unknown function (DUF5609) CJD41_RS08755 PF03315 Serine dehydratase beta chain CJD41_RS08755 PF03313 Serine dehydratase alpha chain CJD41_RS08765 PF00756 Putative esterase CJD41_RS08775 PF01227 GTP cyclohydrolase I CJD41_RS08780 PF04235 Protein of unknown function (DUF418) CJD41_RS08785 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS08790 PF13407 Periplasmic binding protein domain CJD41_RS08795 PF00005 ABC transporter CJD41_RS08800 PF02653 Branched-chain amino acid transport system / permease component CJD41_RS08805 PF01180 Dihydroorotate dehydrogenase CJD41_RS08810 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJD41_RS08810 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS08815 PF10808 Protein of unknown function (DUF2542) CJD41_RS08820 PF02698 DUF218 domain CJD41_RS08825 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CJD41_RS08825 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CJD41_RS08830 PF04172 LrgB-like family CJD41_RS08835 PF03788 LrgA family CJD41_RS08840 PF03466 LysR substrate binding domain CJD41_RS08840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS08845 PF07690 Major Facilitator Superfamily CJD41_RS08850 PF07883 Cupin domain CJD41_RS08855 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJD41_RS08860 PF14497 Glutathione S-transferase, C-terminal domain CJD41_RS08860 PF02798 Glutathione S-transferase, N-terminal domain CJD41_RS08865 PF01494 FAD binding domain CJD41_RS08870 PF01207 Dihydrouridine synthase (Dus) CJD41_RS08880 PF02321 Outer membrane efflux protein CJD41_RS08890 PF09335 SNARE associated Golgi protein CJD41_RS08895 PF04893 Yip1 domain CJD41_RS08905 PF00768 D-alanyl-D-alanine carboxypeptidase CJD41_RS08910 PF09330 D-lactate dehydrogenase, membrane binding CJD41_RS08910 PF01565 FAD binding domain CJD41_RS08915 PF00933 Glycosyl hydrolase family 3 N terminal domain CJD41_RS08915 PF01915 Glycosyl hydrolase family 3 C-terminal domain CJD41_RS08915 PF14310 Fibronectin type III-like domain CJD41_RS08920 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CJD41_RS08925 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS08930 PF00005 ABC transporter CJD41_RS08935 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS08945 PF13411 MerR HTH family regulatory protein CJD41_RS08950 PF07694 5TMR of 5TMR-LYT CJD41_RS08950 PF06580 Histidine kinase CJD41_RS08955 PF00072 Response regulator receiver domain CJD41_RS08955 PF04397 LytTr DNA-binding domain CJD41_RS08960 PF07308 Protein of unknown function (DUF1456) CJD41_RS08970 PF06998 Protein of unknown function (DUF1307) CJD41_RS08975 PF01588 Putative tRNA binding domain CJD41_RS08975 PF09334 tRNA synthetases class I (M) CJD41_RS08980 PF10609 NUBPL iron-transfer P-loop NTPase CJD41_RS09010 PF11776 Nickel/cobalt transporter regulator CJD41_RS09015 PF02110 Hydroxyethylthiazole kinase family CJD41_RS09020 PF08543 Phosphomethylpyrimidine kinase CJD41_RS09025 PF07702 UTRA domain CJD41_RS09025 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS09030 PF00294 pfkB family carbohydrate kinase CJD41_RS09035 PF03747 ADP-ribosylglycohydrolase CJD41_RS09040 PF03825 Nucleoside H+ symporter CJD41_RS09045 PF01791 DeoC/LacD family aldolase CJD41_RS09050 PF00781 Diacylglycerol kinase catalytic domain CJD41_RS09060 PF05932 Tir chaperone protein (CesT) family CJD41_RS09070 PF01136 Peptidase family U32 CJD41_RS09070 PF16325 Peptidase family U32 C-terminal domain CJD41_RS09095 PF00072 Response regulator receiver domain CJD41_RS09095 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS09100 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS09100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS09100 PF00672 HAMP domain CJD41_RS09110 PF00873 AcrB/AcrD/AcrF family CJD41_RS09115 PF00873 AcrB/AcrD/AcrF family CJD41_RS09120 PF13533 Biotin-lipoyl like CJD41_RS09130 PF00012 Hsp70 protein CJD41_RS09140 PF06029 AlkA N-terminal domain CJD41_RS09140 PF00730 HhH-GPD superfamily base excision DNA repair protein CJD41_RS09145 PF08447 PAS fold CJD41_RS09145 PF05231 MASE1 CJD41_RS09145 PF00990 Diguanylate cyclase, GGDEF domain CJD41_RS09145 PF08448 PAS fold CJD41_RS09145 PF00563 EAL domain CJD41_RS09145 PF13426 PAS domain CJD41_RS09150 PF00485 Phosphoribulokinase / Uridine kinase family CJD41_RS09155 PF00692 dUTPase CJD41_RS09160 PF05170 AsmA family CJD41_RS09165 PF00571 CBS domain CJD41_RS09165 PF03471 Transporter associated domain CJD41_RS09165 PF03741 Integral membrane protein TerC family CJD41_RS09180 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJD41_RS09185 PF02706 Chain length determinant protein CJD41_RS09185 PF13807 G-rich domain on putative tyrosine kinase CJD41_RS09185 PF13614 AAA domain CJD41_RS09190 PF00535 Glycosyl transferase family 2 CJD41_RS09195 PF00132 Bacterial transferase hexapeptide (six repeats) CJD41_RS09200 PF00534 Glycosyl transferases group 1 CJD41_RS09200 PF13439 Glycosyltransferase Family 4 CJD41_RS09210 PF00535 Glycosyl transferase family 2 CJD41_RS09215 PF00132 Bacterial transferase hexapeptide (six repeats) CJD41_RS09220 PF16363 GDP-mannose 4,6 dehydratase CJD41_RS09225 PF01370 NAD dependent epimerase/dehydratase family CJD41_RS09230 PF00293 NUDIX domain CJD41_RS09235 PF00534 Glycosyl transferases group 1 CJD41_RS09235 PF13579 Glycosyl transferase 4-like domain CJD41_RS09240 PF00483 Nucleotidyl transferase CJD41_RS09240 PF01050 Mannose-6-phosphate isomerase CJD41_RS09245 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJD41_RS09245 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJD41_RS09245 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJD41_RS09245 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJD41_RS09250 PF02397 Bacterial sugar transferase CJD41_RS09260 PF04230 Polysaccharide pyruvyl transferase CJD41_RS09275 PF00483 Nucleotidyl transferase CJD41_RS09280 PF16363 GDP-mannose 4,6 dehydratase CJD41_RS09285 PF04321 RmlD substrate binding domain CJD41_RS09290 PF00483 Nucleotidyl transferase CJD41_RS09295 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CJD41_RS09300 PF00175 Oxidoreductase NAD-binding domain CJD41_RS09300 PF00111 2Fe-2S iron-sulfur cluster binding domain CJD41_RS09300 PF00970 Oxidoreductase FAD-binding domain CJD41_RS09305 PF00483 Nucleotidyl transferase CJD41_RS09310 PF16363 GDP-mannose 4,6 dehydratase CJD41_RS09315 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJD41_RS09320 PF01370 NAD dependent epimerase/dehydratase family CJD41_RS09325 PF16363 GDP-mannose 4,6 dehydratase CJD41_RS09335 PF00535 Glycosyl transferase family 2 CJD41_RS09340 PF00534 Glycosyl transferases group 1 CJD41_RS09340 PF13439 Glycosyltransferase Family 4 CJD41_RS09345 PF00535 Glycosyl transferase family 2 CJD41_RS09350 PF00483 Nucleotidyl transferase CJD41_RS09350 PF01050 Mannose-6-phosphate isomerase CJD41_RS09355 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJD41_RS09355 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJD41_RS09355 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJD41_RS09355 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJD41_RS09360 PF02397 Bacterial sugar transferase CJD41_RS09365 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJD41_RS09365 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CJD41_RS09375 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CJD41_RS09375 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CJD41_RS09380 PF02706 Chain length determinant protein CJD41_RS09385 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CJD41_RS09385 PF01502 Phosphoribosyl-AMP cyclohydrolase CJD41_RS09390 PF00977 Histidine biosynthesis protein CJD41_RS09395 PF00977 Histidine biosynthesis protein CJD41_RS09400 PF00117 Glutamine amidotransferase class-I CJD41_RS09405 PF00475 Imidazoleglycerol-phosphate dehydratase CJD41_RS09410 PF00155 Aminotransferase class I and II CJD41_RS09415 PF00815 Histidinol dehydrogenase CJD41_RS09420 PF01634 ATP phosphoribosyltransferase CJD41_RS09420 PF08029 HisG, C-terminal domain CJD41_RS09430 PF01370 NAD dependent epimerase/dehydratase family CJD41_RS09435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS09435 PF03466 LysR substrate binding domain CJD41_RS09445 PF13520 Amino acid permease CJD41_RS09450 PF08411 Exonuclease C-terminal CJD41_RS09450 PF00929 Exonuclease CJD41_RS09460 PF01906 Putative heavy-metal-binding CJD41_RS09465 PF00384 Molybdopterin oxidoreductase CJD41_RS09465 PF01568 Molydopterin dinucleotide binding domain CJD41_RS09465 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJD41_RS09475 PF01292 Prokaryotic cytochrome b561 CJD41_RS09480 PF07943 Penicillin-binding protein 5, C-terminal domain CJD41_RS09480 PF00768 D-alanyl-D-alanine carboxypeptidase CJD41_RS09485 PF06445 GyrI-like small molecule binding domain CJD41_RS09490 PF04632 Fusaric acid resistance protein family CJD41_RS09495 PF04363 Protein of unknown function (DUF496) CJD41_RS09500 PF00288 GHMP kinases N terminal domain CJD41_RS09505 PF00871 Acetokinase family CJD41_RS09510 PF10662 Ethanolamine utilisation - propanediol utilisation CJD41_RS09515 PF00936 BMC domain CJD41_RS09525 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CJD41_RS09525 PF13237 4Fe-4S dicluster domain CJD41_RS09525 PF10531 SLBB domain CJD41_RS09525 PF13375 RnfC Barrel sandwich hybrid domain CJD41_RS09530 PF00171 Aldehyde dehydrogenase family CJD41_RS09530 PF00465 Iron-containing alcohol dehydrogenase CJD41_RS09535 PF00171 Aldehyde dehydrogenase family CJD41_RS09540 PF01923 Cobalamin adenosyltransferase CJD41_RS09545 PF03319 Ethanolamine utilisation protein EutN/carboxysome CJD41_RS09555 PF06130 Phosphate propanoyltransferase CJD41_RS09560 PF00936 BMC domain CJD41_RS09565 PF00936 BMC domain CJD41_RS09575 PF18427 DD-reactivating factor swiveling domain CJD41_RS09575 PF08841 Diol dehydratase reactivase ATPase-like domain CJD41_RS09580 PF02287 Dehydratase small subunit CJD41_RS09585 PF02288 Dehydratase medium subunit CJD41_RS09590 PF02286 Dehydratase large subunit CJD41_RS09595 PF00936 BMC domain CJD41_RS09600 PF00936 BMC domain CJD41_RS09605 PF00230 Major intrinsic protein CJD41_RS09615 PF07685 CobB/CobQ-like glutamine amidotransferase domain CJD41_RS09615 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJD41_RS09620 PF03186 CobD/Cbib protein CJD41_RS09625 PF02570 Precorrin-8X methylmutase CJD41_RS09630 PF01888 CbiD CJD41_RS09635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJD41_RS09640 PF05175 Methyltransferase small domain CJD41_RS09650 PF11760 Cobalamin synthesis G N-terminal CJD41_RS09650 PF11761 Cobalamin biosynthesis central region CJD41_RS09650 PF01890 Cobalamin synthesis G C-terminus CJD41_RS09655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJD41_RS09660 PF02571 Precorrin-6x reductase CbiJ/CobK CJD41_RS09665 PF06180 Cobalt chelatase (CbiK) CJD41_RS09670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJD41_RS09675 PF01891 Cobalt uptake substrate-specific transmembrane region CJD41_RS09680 PF02553 Cobalt transport protein component CbiN CJD41_RS09685 PF02361 Cobalt transport protein CJD41_RS09690 PF00005 ABC transporter CJD41_RS09695 PF07685 CobB/CobQ-like glutamine amidotransferase domain CJD41_RS09700 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CJD41_RS09705 PF02654 Cobalamin-5-phosphate synthase CJD41_RS09710 PF02277 Phosphoribosyltransferase CJD41_RS09715 PF17969 L,D-transpeptidase C-terminal domain CJD41_RS09715 PF03734 L,D-transpeptidase catalytic domain CJD41_RS09755 PF01048 Phosphorylase superfamily CJD41_RS09755 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CJD41_RS09825 PF00816 H-NS histone family CJD41_RS09905 PF07484 Phage Tail Collar Domain CJD41_RS09915 PF13676 TIR domain CJD41_RS09955 PF00589 Phage integrase family CJD41_RS09955 PF13356 Arm DNA-binding domain CJD41_RS09965 PF06167 Glucose-regulated metallo-peptidase M90 CJD41_RS09995 PF02371 Transposase IS116/IS110/IS902 family CJD41_RS09995 PF01548 Transposase CJD41_RS10020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJD41_RS10025 PF02811 PHP domain CJD41_RS10030 PF02613 Nitrate reductase delta subunit CJD41_RS10035 PF06496 Protein of unknown function (DUF1097) CJD41_RS10040 PF03783 Curli production assembly/transport component CsgG CJD41_RS10045 PF10614 Type VIII secretion system (T8SS), CsgF protein CJD41_RS10050 PF10627 Curli assembly protein CsgE CJD41_RS10055 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS10060 PF07012 Curlin associated repeat CJD41_RS10065 PF07012 Curlin associated repeat CJD41_RS10070 PF10610 Thin aggregative fimbriae synthesis protein CJD41_RS10080 PF01661 Macro domain CJD41_RS10085 PF13091 PLD-like domain CJD41_RS10090 PF01757 Acyltransferase family CJD41_RS10100 PF04349 Periplasmic glucan biosynthesis protein, MdoG CJD41_RS10105 PF00535 Glycosyl transferase family 2 CJD41_RS10110 PF07119 Protein of unknown function (DUF1375) CJD41_RS10120 PF07690 Major Facilitator Superfamily CJD41_RS10130 PF03279 Bacterial lipid A biosynthesis acyltransferase CJD41_RS10135 PF17773 UPF0176 acylphosphatase like domain CJD41_RS10135 PF12368 Rhodanase C-terminal CJD41_RS10135 PF00581 Rhodanese-like domain CJD41_RS10140 PF04264 YceI-like domain CJD41_RS10145 PF01292 Prokaryotic cytochrome b561 CJD41_RS10150 PF10968 Protein of unknown function (DUF2770) CJD41_RS10155 PF01266 FAD dependent oxidoreductase CJD41_RS10160 PF13991 BssS protein family CJD41_RS10165 PF01979 Amidohydrolase family CJD41_RS10170 PF07273 Protein of unknown function (DUF1439) CJD41_RS10175 PF04399 Glutaredoxin 2, C terminal domain CJD41_RS10175 PF13417 Glutathione S-transferase, N-terminal domain CJD41_RS10180 PF07690 Major Facilitator Superfamily CJD41_RS10185 PF13302 Acetyltransferase (GNAT) domain CJD41_RS10190 PF04337 Protein of unknown function, DUF480 CJD41_RS10195 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJD41_RS10205 PF03023 Lipid II flippase MurJ CJD41_RS10210 PF05130 FlgN protein CJD41_RS10215 PF04316 Anti-sigma-28 factor, FlgM CJD41_RS10220 PF13144 Chaperone for flagella basal body P-ring formation CJD41_RS10230 PF00460 Flagella basal body rod protein CJD41_RS10235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJD41_RS10235 PF00460 Flagella basal body rod protein CJD41_RS10240 PF13860 FlgD Ig-like domain CJD41_RS10240 PF13861 FlgD Tudor-like domain CJD41_RS10240 PF03963 Flagellar hook capping protein - N-terminal region CJD41_RS10245 PF07559 Flagellar basal body protein FlaE CJD41_RS10245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJD41_RS10245 PF00460 Flagella basal body rod protein CJD41_RS10250 PF00460 Flagella basal body rod protein CJD41_RS10250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJD41_RS10255 PF00460 Flagella basal body rod protein CJD41_RS10255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJD41_RS10260 PF02107 Flagellar L-ring protein CJD41_RS10265 PF02119 Flagellar P-ring protein CJD41_RS10270 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CJD41_RS10270 PF10135 Rod binding protein CJD41_RS10280 PF00669 Bacterial flagellin N-terminal helical region CJD41_RS10290 PF12111 Polyribonucleotide phosphorylase C terminal CJD41_RS10290 PF10150 Ribonuclease E/G family CJD41_RS10290 PF00575 S1 RNA binding domain CJD41_RS10300 PF01479 S4 domain CJD41_RS10300 PF00849 RNA pseudouridylate synthase CJD41_RS10315 PF02545 Maf-like protein CJD41_RS10320 PF02620 Large ribosomal RNA subunit accumulation protein YceD CJD41_RS10325 PF01783 Ribosomal L32p protein family CJD41_RS10330 PF02504 Fatty acid synthesis protein CJD41_RS10335 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJD41_RS10335 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJD41_RS10340 PF00698 Acyl transferase domain CJD41_RS10350 PF00550 Phosphopantetheine attachment site CJD41_RS10355 PF00109 Beta-ketoacyl synthase, N-terminal domain CJD41_RS10355 PF02801 Beta-ketoacyl synthase, C-terminal domain CJD41_RS10360 PF01063 Amino-transferase class IV CJD41_RS10365 PF02618 YceG-like family CJD41_RS10370 PF02223 Thymidylate kinase CJD41_RS10375 PF09115 DNA polymerase III, delta subunit, C terminal CJD41_RS10380 PF01026 TatD related DNase CJD41_RS10385 PF00367 phosphotransferase system, EIIB CJD41_RS10385 PF02378 Phosphotransferase system, EIIC CJD41_RS10395 PF01230 HIT domain CJD41_RS10400 PF07233 Protein of unknown function (DUF1425) CJD41_RS10405 PF13036 Peptidoglycan-synthase activator LpoB CJD41_RS10410 PF01636 Phosphotransferase enzyme family CJD41_RS10415 PF00933 Glycosyl hydrolase family 3 N terminal domain CJD41_RS10420 PF05728 Uncharacterised protein family (UPF0227) CJD41_RS10425 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS10430 PF05433 Glycine zipper 2TM domain CJD41_RS10435 PF00440 Bacterial regulatory proteins, tetR family CJD41_RS10440 PF07338 Protein of unknown function (DUF1471) CJD41_RS10445 PF03734 L,D-transpeptidase catalytic domain CJD41_RS10445 PF01476 LysM domain CJD41_RS10445 PF17969 L,D-transpeptidase C-terminal domain CJD41_RS10450 PF00270 DEAD/DEAH box helicase CJD41_RS10450 PF02559 CarD-like/TRCF domain CJD41_RS10450 PF00271 Helicase conserved C-terminal domain CJD41_RS10450 PF03461 TRCF domain CJD41_RS10450 PF17757 UvrB interaction domain CJD41_RS10455 PF12704 MacB-like periplasmic core domain CJD41_RS10455 PF02687 FtsX-like permease family CJD41_RS10460 PF00005 ABC transporter CJD41_RS10465 PF12704 MacB-like periplasmic core domain CJD41_RS10465 PF02687 FtsX-like permease family CJD41_RS10470 PF00480 ROK family CJD41_RS10475 PF02146 Sir2 family CJD41_RS10480 PF13416 Bacterial extracellular solute-binding protein CJD41_RS10485 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS10490 PF06767 Sif protein CJD41_RS10495 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS10500 PF08402 TOBE domain CJD41_RS10500 PF00005 ABC transporter CJD41_RS10515 PF08007 Cupin superfamily protein CJD41_RS10520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS10520 PF08918 PhoQ Sensor CJD41_RS10525 PF00072 Response regulator receiver domain CJD41_RS10525 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS10530 PF00206 Lyase CJD41_RS10530 PF08328 Adenylosuccinate lyase C-terminal CJD41_RS10535 PF04356 Protein of unknown function (DUF489) CJD41_RS10545 PF00293 NUDIX domain CJD41_RS10555 PF00849 RNA pseudouridylate synthase CJD41_RS10565 PF00180 Isocitrate/isopropylmalate dehydrogenase CJD41_RS10590 PF06183 DinI-like family CJD41_RS10595 PF00652 Ricin-type beta-trefoil lectin domain CJD41_RS10600 PF00313 'Cold-shock' DNA-binding domain CJD41_RS10615 PF06316 Enterobacterial Ail/Lom protein CJD41_RS10645 PF00011 Hsp20/alpha crystallin family CJD41_RS10665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD41_RS10670 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS10675 PF12911 N-terminal TM domain of oligopeptide transport permease C CJD41_RS10675 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS10680 PF00005 ABC transporter CJD41_RS10685 PF00005 ABC transporter CJD41_RS10690 PF00924 Mechanosensitive ion channel CJD41_RS10705 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CJD41_RS10710 PF13427 Domain of unknown function (DUF4111) CJD41_RS10710 PF01909 Nucleotidyltransferase domain CJD41_RS10720 PF00376 MerR family regulatory protein CJD41_RS10720 PF09278 MerR, DNA binding CJD41_RS10735 PF01817 Chorismate mutase type II CJD41_RS10740 PF01810 LysE type translocator CJD41_RS10750 PF09313 Domain of unknown function (DUF1971) CJD41_RS10755 PF08956 Domain of unknown function (DUF1869) CJD41_RS10770 PF04226 Transglycosylase associated protein CJD41_RS10780 PF03891 Domain of unknown function (DUF333) CJD41_RS10790 PF04343 Protein of unknown function, DUF488 CJD41_RS10795 PF07690 Major Facilitator Superfamily CJD41_RS10800 PF02311 AraC-like ligand binding domain CJD41_RS10800 PF12833 Helix-turn-helix domain CJD41_RS10805 PF04284 Protein of unknown function (DUF441) CJD41_RS10815 PF04073 Aminoacyl-tRNA editing domain CJD41_RS10820 PF00990 Diguanylate cyclase, GGDEF domain CJD41_RS10820 PF17155 Gammaproteobacterial periplasmic sensor domain CJD41_RS10830 PF04285 Protein of unknown function (DUF444) CJD41_RS10840 PF06629 MltA-interacting protein MipA CJD41_RS10850 PF00248 Aldo/keto reductase family CJD41_RS10855 PF01263 Aldose 1-epimerase CJD41_RS10865 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJD41_RS10865 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CJD41_RS10870 PF01641 SelR domain CJD41_RS10875 PF07023 Protein of unknown function (DUF1315) CJD41_RS10880 PF00107 Zinc-binding dehydrogenase CJD41_RS10880 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS10885 PF00083 Sugar (and other) transporter CJD41_RS10895 PF01116 Fructose-bisphosphate aldolase class-II CJD41_RS10900 PF00294 pfkB family carbohydrate kinase CJD41_RS10905 PF00248 Aldo/keto reductase family CJD41_RS10910 PF00455 DeoR C terminal sensor domain CJD41_RS10910 PF08220 DeoR-like helix-turn-helix domain CJD41_RS10920 PF00857 Isochorismatase family CJD41_RS10925 PF00710 Asparaginase, N-terminal CJD41_RS10925 PF17763 Glutaminase/Asparaginase C-terminal domain CJD41_RS10930 PF01343 Peptidase family S49 CJD41_RS10935 PF00881 Nitroreductase family CJD41_RS10940 PF02769 AIR synthase related protein, C-terminal domain CJD41_RS10940 PF00586 AIR synthase related protein, N-terminal domain CJD41_RS10945 PF01131 DNA topoisomerase CJD41_RS10945 PF01751 Toprim domain CJD41_RS10950 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CJD41_RS10950 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CJD41_RS10960 PF00293 NUDIX domain CJD41_RS10965 PF03372 Endonuclease/Exonuclease/phosphatase family CJD41_RS10980 PF00171 Aldehyde dehydrogenase family CJD41_RS10985 PF04996 Succinylarginine dihydrolase CJD41_RS10990 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CJD41_RS11000 PF07813 LTXXQ motif family protein CJD41_RS11010 PF02540 NAD synthase CJD41_RS11015 PF04355 SmpA / OmlA family CJD41_RS11025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJD41_RS11030 PF02378 Phosphotransferase system, EIIC CJD41_RS11035 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CJD41_RS11040 PF07883 Cupin domain CJD41_RS11040 PF12833 Helix-turn-helix domain CJD41_RS11045 PF02056 Family 4 glycosyl hydrolase CJD41_RS11045 PF11975 Family 4 glycosyl hydrolase C-terminal domain CJD41_RS11050 PF04794 YdjC-like protein CJD41_RS11055 PF06628 Catalase-related immune-responsive CJD41_RS11055 PF18011 C-terminal domain found in long catalases CJD41_RS11055 PF00199 Catalase CJD41_RS11060 PF10729 Cell division activator CedA CJD41_RS11065 PF00375 Sodium:dicarboxylate symporter family CJD41_RS11070 PF04307 LexA-binding, inner membrane-associated putative hydrolase CJD41_RS11075 PF13419 Haloacid dehalogenase-like hydrolase CJD41_RS11085 PF03881 Fructosamine kinase CJD41_RS11090 PF11080 Endoribonuclease GhoS CJD41_RS11095 PF00294 pfkB family carbohydrate kinase CJD41_RS11100 PF04338 Protein of unknown function, DUF481 CJD41_RS11115 PF01223 DNA/RNA non-specific endonuclease CJD41_RS11120 PF03129 Anticodon binding domain CJD41_RS11120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJD41_RS11120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJD41_RS11120 PF02824 TGS domain CJD41_RS11125 PF00707 Translation initiation factor IF-3, C-terminal domain CJD41_RS11125 PF05198 Translation initiation factor IF-3, N-terminal domain CJD41_RS11130 PF01632 Ribosomal protein L35 CJD41_RS11135 PF00453 Ribosomal protein L20 CJD41_RS11145 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CJD41_RS11145 PF01409 tRNA synthetases class II core domain (F) CJD41_RS11190 PF10636 Hemin uptake protein hemP CJD41_RS11195 PF00793 DAHP synthetase I family CJD41_RS11200 PF03618 Kinase/pyrophosphorylase CJD41_RS11225 PF01012 Electron transfer flavoprotein domain CJD41_RS11225 PF00766 Electron transfer flavoprotein FAD-binding domain CJD41_RS11235 PF12833 Helix-turn-helix domain CJD41_RS11235 PF02311 AraC-like ligand binding domain CJD41_RS11240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJD41_RS11240 PF02770 Acyl-CoA dehydrogenase, middle domain CJD41_RS11240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJD41_RS11245 PF01144 Coenzyme A transferase CJD41_RS11250 PF01487 Type I 3-dehydroquinase CJD41_RS11255 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CJD41_RS11255 PF08501 Shikimate dehydrogenase substrate binding domain CJD41_RS11260 PF07690 Major Facilitator Superfamily CJD41_RS11265 PF07690 Major Facilitator Superfamily CJD41_RS11270 PF08965 Domain of unknown function (DUF1870) CJD41_RS11280 PF01594 AI-2E family transporter CJD41_RS11285 PF13183 4Fe-4S dicluster domain CJD41_RS11285 PF02913 FAD linked oxidases, C-terminal domain CJD41_RS11285 PF01565 FAD binding domain CJD41_RS11290 PF03061 Thioesterase superfamily CJD41_RS11295 PF15930 Domain of unknown function CJD41_RS11300 PF00375 Sodium:dicarboxylate symporter family CJD41_RS11305 PF01521 Iron-sulphur cluster biosynthesis CJD41_RS11310 PF01458 Uncharacterized protein family (UPF0051) CJD41_RS11315 PF00005 ABC transporter CJD41_RS11320 PF01458 Uncharacterized protein family (UPF0051) CJD41_RS11325 PF00266 Aminotransferase class-V CJD41_RS11330 PF02657 Fe-S metabolism associated domain CJD41_RS11335 PF17969 L,D-transpeptidase C-terminal domain CJD41_RS11335 PF03734 L,D-transpeptidase catalytic domain CJD41_RS11335 PF01476 LysM domain CJD41_RS11340 PF04728 Lipoprotein leucine-zipper CJD41_RS11345 PF04728 Lipoprotein leucine-zipper CJD41_RS11350 PF00224 Pyruvate kinase, barrel domain CJD41_RS11350 PF02887 Pyruvate kinase, alpha/beta domain CJD41_RS11360 PF00324 Amino acid permease CJD41_RS11375 PF00294 pfkB family carbohydrate kinase CJD41_RS11380 PF00384 Molybdopterin oxidoreductase CJD41_RS11380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJD41_RS11380 PF01568 Molydopterin dinucleotide binding domain CJD41_RS11385 PF03916 Polysulphide reductase, NrfD CJD41_RS11395 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS11395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS11400 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS11400 PF00072 Response regulator receiver domain CJD41_RS11405 PF10965 Protein of unknown function (DUF2767) CJD41_RS11410 PF08349 Protein of unknown function (DUF1722) CJD41_RS11415 PF13411 MerR HTH family regulatory protein CJD41_RS11420 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS11420 PF00072 Response regulator receiver domain CJD41_RS11425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS11425 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS11425 PF00672 HAMP domain CJD41_RS11425 PF00072 Response regulator receiver domain CJD41_RS11425 PF01627 Hpt domain CJD41_RS11425 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CJD41_RS11435 PF00263 Bacterial type II and III secretion system protein CJD41_RS11435 PF03958 Bacterial type II/III secretion system short domain CJD41_RS11455 PF03433 EspA-like secreted protein CJD41_RS11465 PF04888 Secretion system effector C (SseC) like family CJD41_RS11470 PF05802 Enterobacterial EspB protein CJD41_RS11510 PF01514 Secretory protein of YscJ/FliF family CJD41_RS11525 PF07201 HrpJ-like domain CJD41_RS11535 PF00771 FHIPEP family CJD41_RS11540 PF18269 T3SS EscN ATPase C-terminal domain CJD41_RS11540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJD41_RS11555 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJD41_RS11560 PF00813 FliP family CJD41_RS11565 PF01313 Bacterial export proteins, family 3 CJD41_RS11570 PF01311 Bacterial export proteins, family 1 CJD41_RS11575 PF01312 FlhB HrpN YscU SpaS Family CJD41_RS11590 PF01554 MatE CJD41_RS11595 PF00677 Lumazine binding domain CJD41_RS11605 PF07690 Major Facilitator Superfamily CJD41_RS11610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS11610 PF03466 LysR substrate binding domain CJD41_RS11615 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS11625 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CJD41_RS11625 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CJD41_RS11630 PF00877 NlpC/P60 family CJD41_RS11635 PF00462 Glutaredoxin CJD41_RS11640 PF00929 Exonuclease CJD41_RS11645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJD41_RS11650 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJD41_RS11655 PF00440 Bacterial regulatory proteins, tetR family CJD41_RS11655 PF16925 Tetracyclin repressor-like, C-terminal domain CJD41_RS11660 PF06945 Protein of unknown function (DUF1289) CJD41_RS11665 PF00248 Aldo/keto reductase family CJD41_RS11670 PF00080 Copper/zinc superoxide dismutase (SODC) CJD41_RS11680 PF00529 HlyD membrane-fusion protein of T1SS CJD41_RS11680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJD41_RS11685 PF07869 Protein of unknown function (DUF1656) CJD41_RS11690 PF01047 MarR family CJD41_RS11695 PF05433 Glycine zipper 2TM domain CJD41_RS11700 PF03702 Anhydro-N-acetylmuramic acid kinase CJD41_RS11705 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CJD41_RS11710 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CJD41_RS11710 PF01243 Pyridoxamine 5'-phosphate oxidase CJD41_RS11715 PF01479 S4 domain CJD41_RS11715 PF00579 tRNA synthetases class I (W and Y) CJD41_RS11720 PF08543 Phosphomethylpyrimidine kinase CJD41_RS11725 PF00043 Glutathione S-transferase, C-terminal domain CJD41_RS11725 PF02798 Glutathione S-transferase, N-terminal domain CJD41_RS11730 PF00854 POT family CJD41_RS11735 PF10576 Iron-sulfur binding domain of endonuclease III CJD41_RS11735 PF00730 HhH-GPD superfamily base excision DNA repair protein CJD41_RS11735 PF00633 Helix-hairpin-helix motif CJD41_RS11740 PF02508 Rnf-Nqr subunit, membrane protein CJD41_RS11745 PF04205 FMN-binding domain CJD41_RS11750 PF03116 NQR2, RnfD, RnfE family CJD41_RS11755 PF13375 RnfC Barrel sandwich hybrid domain CJD41_RS11755 PF10531 SLBB domain CJD41_RS11755 PF12838 4Fe-4S dicluster domain CJD41_RS11755 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CJD41_RS11760 PF04060 Putative Fe-S cluster CJD41_RS11765 PF02508 Rnf-Nqr subunit, membrane protein CJD41_RS11770 PF10754 Protein of unknown function (DUF2569) CJD41_RS11775 PF05321 Haemolysin expression modulating protein CJD41_RS11785 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJD41_RS11785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJD41_RS11790 PF00962 Adenosine/AMP deaminase CJD41_RS11800 PF02378 Phosphotransferase system, EIIC CJD41_RS11800 PF00367 phosphotransferase system, EIIB CJD41_RS11805 PF06097 Bacterial protein of unknown function (DUF945) CJD41_RS11810 PF01238 Phosphomannose isomerase type I CJD41_RS11815 PF05683 Fumarase C-terminus CJD41_RS11815 PF05681 Fumarate hydratase (Fumerase) CJD41_RS11820 PF00206 Lyase CJD41_RS11820 PF10415 Fumarase C C-terminus CJD41_RS11825 PF05472 DNA replication terminus site-binding protein (Ter protein) CJD41_RS11830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS11830 PF00672 HAMP domain CJD41_RS11830 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS11835 PF01979 Amidohydrolase family CJD41_RS11835 PF13382 Adenine deaminase C-terminal domain CJD41_RS11840 PF00267 Gram-negative porin CJD41_RS11850 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS11850 PF00072 Response regulator receiver domain CJD41_RS11855 PF06942 GlpM protein CJD41_RS11860 PF13520 Amino acid permease CJD41_RS11865 PF07338 Protein of unknown function (DUF1471) CJD41_RS11870 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CJD41_RS11870 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CJD41_RS11870 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CJD41_RS11875 PF02233 NAD(P) transhydrogenase beta subunit CJD41_RS11880 PF01594 AI-2E family transporter CJD41_RS11890 PF00893 Small Multidrug Resistance protein CJD41_RS11895 PF00893 Small Multidrug Resistance protein CJD41_RS11910 PF07690 Major Facilitator Superfamily CJD41_RS11915 PF03466 LysR substrate binding domain CJD41_RS11915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS11925 PF00480 ROK family CJD41_RS11935 PF00654 Voltage gated chloride channel CJD41_RS11940 PF00005 ABC transporter CJD41_RS11940 PF00571 CBS domain CJD41_RS11945 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS11950 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CJD41_RS11955 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS11965 PF04976 DMSO reductase anchor subunit (DmsC) CJD41_RS11970 PF13247 4Fe-4S dicluster domain CJD41_RS11970 PF12800 4Fe-4S binding domain CJD41_RS11975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJD41_RS11975 PF00384 Molybdopterin oxidoreductase CJD41_RS11975 PF01568 Molydopterin dinucleotide binding domain CJD41_RS11980 PF01568 Molydopterin dinucleotide binding domain CJD41_RS11980 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJD41_RS11980 PF00384 Molybdopterin oxidoreductase CJD41_RS11985 PF06649 Protein of unknown function (DUF1161) CJD41_RS11990 PF06788 Uncharacterised protein family (UPF0257) CJD41_RS11995 PF13302 Acetyltransferase (GNAT) domain CJD41_RS12000 PF06932 Protein of unknown function (DUF1283) CJD41_RS12005 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CJD41_RS12010 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJD41_RS12010 PF13378 Enolase C-terminal domain-like CJD41_RS12015 PF00107 Zinc-binding dehydrogenase CJD41_RS12015 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS12020 PF07690 Major Facilitator Superfamily CJD41_RS12020 PF00083 Sugar (and other) transporter CJD41_RS12025 PF08125 Mannitol dehydrogenase C-terminal domain CJD41_RS12025 PF01232 Mannitol dehydrogenase Rossmann domain CJD41_RS12030 PF14001 YdfZ protein CJD41_RS12035 PF07729 FCD domain CJD41_RS12035 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS12045 PF01432 Peptidase family M3 CJD41_RS12055 PF10685 Stress-induced bacterial acidophilic repeat motif CJD41_RS12060 PF02464 Competence-damaged protein CJD41_RS12065 PF04076 Bacterial OB fold (BOF) protein CJD41_RS12075 PF07690 Major Facilitator Superfamily CJD41_RS12080 PF00892 EamA-like transporter family CJD41_RS12085 PF13999 MarB protein CJD41_RS12090 PF12833 Helix-turn-helix domain CJD41_RS12095 PF01047 MarR family CJD41_RS12100 PF01914 MarC family integral membrane protein CJD41_RS12105 PF07690 Major Facilitator Superfamily CJD41_RS12110 PF03466 LysR substrate binding domain CJD41_RS12110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS12115 PF00171 Aldehyde dehydrogenase family CJD41_RS12120 PF04960 Glutaminase CJD41_RS12125 PF13811 Domain of unknown function (DUF4186) CJD41_RS12140 PF00267 Gram-negative porin CJD41_RS12145 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CJD41_RS12155 PF04809 HupH hydrogenase expression protein, C-terminal conserved region CJD41_RS12165 PF01455 HupF/HypC family CJD41_RS12170 PF01750 Hydrogenase maturation protease CJD41_RS12175 PF01292 Prokaryotic cytochrome b561 CJD41_RS12180 PF00374 Nickel-dependent hydrogenase CJD41_RS12185 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJD41_RS12185 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CJD41_RS12195 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS12195 PF07729 FCD domain CJD41_RS12200 PF00107 Zinc-binding dehydrogenase CJD41_RS12200 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS12205 PF07690 Major Facilitator Superfamily CJD41_RS12215 PF07690 Major Facilitator Superfamily CJD41_RS12255 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS12265 PF00128 Alpha amylase, catalytic domain CJD41_RS12280 PF06411 HdeA/HdeB family CJD41_RS12285 PF02566 OsmC-like protein CJD41_RS12290 PF10684 Putative biofilm-dependent modulation protein CJD41_RS12295 PF08136 30S ribosomal protein subunit S22 family CJD41_RS12300 PF00390 Malic enzyme, N-terminal domain CJD41_RS12300 PF03949 Malic enzyme, NAD binding domain CJD41_RS12305 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS12305 PF00107 Zinc-binding dehydrogenase CJD41_RS12310 PF01292 Prokaryotic cytochrome b561 CJD41_RS12315 PF09163 Formate dehydrogenase N, transmembrane CJD41_RS12315 PF12800 4Fe-4S binding domain CJD41_RS12315 PF13247 4Fe-4S dicluster domain CJD41_RS12325 PF00892 EamA-like transporter family CJD41_RS12335 PF00267 Gram-negative porin CJD41_RS12345 PF07690 Major Facilitator Superfamily CJD41_RS12355 PF07690 Major Facilitator Superfamily CJD41_RS12360 PF14710 Respiratory nitrate reductase alpha N-terminal CJD41_RS12360 PF00384 Molybdopterin oxidoreductase CJD41_RS12360 PF01568 Molydopterin dinucleotide binding domain CJD41_RS12365 PF13247 4Fe-4S dicluster domain CJD41_RS12365 PF14711 Respiratory nitrate reductase beta C-terminal CJD41_RS12370 PF02613 Nitrate reductase delta subunit CJD41_RS12375 PF02665 Nitrate reductase gamma subunit CJD41_RS12385 PF00797 N-acetyltransferase CJD41_RS12400 PF00324 Amino acid permease CJD41_RS12405 PF06004 Bacterial protein of unknown function (DUF903) CJD41_RS12420 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS12420 PF07729 FCD domain CJD41_RS12425 PF00107 Zinc-binding dehydrogenase CJD41_RS12425 PF16884 N-terminal domain of oxidoreductase CJD41_RS12435 PF04657 Putative inner membrane exporter, YdcZ CJD41_RS12440 PF10735 Protein of unknown function (DUF2526) CJD41_RS12460 PF10753 Toxin GhoT_OrtT CJD41_RS12470 PF00171 Aldehyde dehydrogenase family CJD41_RS12475 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS12475 PF00155 Aminotransferase class I and II CJD41_RS12480 PF01427 D-ala-D-ala dipeptidase CJD41_RS12500 PF10829 Protein of unknown function (DUF2554) CJD41_RS12505 PF01136 Peptidase family U32 CJD41_RS12505 PF12392 Collagenase CJD41_RS12510 PF07883 Cupin domain CJD41_RS12510 PF01381 Helix-turn-helix CJD41_RS12520 PF11769 Protein of unknown function (DUF3313) CJD41_RS12525 PF03848 Tellurite resistance protein TehB CJD41_RS12530 PF03595 Voltage-dependent anion channel CJD41_RS12535 PF18836 Beta solenoid repeat from YDCK CJD41_RS12540 PF13302 Acetyltransferase (GNAT) domain CJD41_RS12545 PF05343 M42 glutamyl aminopeptidase CJD41_RS12550 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJD41_RS12555 PF03611 PTS system sugar-specific permease component CJD41_RS12560 PF03437 BtpA family CJD41_RS12565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJD41_RS12570 PF00834 Ribulose-phosphate 3 epimerase family CJD41_RS12575 PF00455 DeoR C terminal sensor domain CJD41_RS12575 PF08220 DeoR-like helix-turn-helix domain CJD41_RS12580 PF00583 Acetyltransferase (GNAT) family CJD41_RS12585 PF13378 Enolase C-terminal domain-like CJD41_RS12585 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJD41_RS12590 PF00106 short chain dehydrogenase CJD41_RS12600 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS12600 PF00107 Zinc-binding dehydrogenase CJD41_RS12605 PF07729 FCD domain CJD41_RS12605 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS12610 PF04264 YceI-like domain CJD41_RS12615 PF04349 Periplasmic glucan biosynthesis protein, MdoG CJD41_RS12620 PF00135 Carboxylesterase family CJD41_RS12625 PF07063 Domain of unknown function (DUF1338) CJD41_RS12630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS12630 PF03466 LysR substrate binding domain CJD41_RS12635 PF02203 Tar ligand binding domain homologue CJD41_RS12635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJD41_RS12635 PF00672 HAMP domain CJD41_RS12645 PF00107 Zinc-binding dehydrogenase CJD41_RS12645 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS12650 PF02583 Metal-sensitive transcriptional repressor CJD41_RS12665 PF00657 GDSL-like Lipase/Acylhydrolase CJD41_RS12665 PF06767 Sif protein CJD41_RS12675 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJD41_RS12680 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS12685 PF00005 ABC transporter CJD41_RS12690 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS12700 PF08242 Methyltransferase domain CJD41_RS12705 PF01292 Prokaryotic cytochrome b561 CJD41_RS12710 PF02698 DUF218 domain CJD41_RS12715 PF00271 Helicase conserved C-terminal domain CJD41_RS12715 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CJD41_RS12715 PF11898 Domain of unknown function (DUF3418) CJD41_RS12715 PF00270 DEAD/DEAH box helicase CJD41_RS12715 PF04408 Helicase associated domain (HA2) CJD41_RS12720 PF02525 Flavodoxin-like fold CJD41_RS12730 PF07027 Protein of unknown function (DUF1318) CJD41_RS12735 PF13617 YnbE-like lipoprotein CJD41_RS12740 PF11739 Dicarboxylate transport CJD41_RS12745 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJD41_RS12745 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJD41_RS12750 PF03724 META domain CJD41_RS12755 PF03891 Domain of unknown function (DUF333) CJD41_RS12765 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CJD41_RS12765 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CJD41_RS12765 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CJD41_RS12765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJD41_RS12765 PF10371 Domain of unknown function CJD41_RS12770 PF00582 Universal stress protein family CJD41_RS12775 PF00893 Small Multidrug Resistance protein CJD41_RS12790 PF01171 PP-loop family CJD41_RS12795 PF00271 Helicase conserved C-terminal domain CJD41_RS12795 PF00270 DEAD/DEAH box helicase CJD41_RS12795 PF03880 DbpA RNA binding domain CJD41_RS12805 PF00672 HAMP domain CJD41_RS12805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJD41_RS12805 PF02203 Tar ligand binding domain homologue CJD41_RS12815 PF01713 Smr domain CJD41_RS12820 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJD41_RS12820 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJD41_RS12825 PF13545 Crp-like helix-turn-helix domain CJD41_RS12825 PF00027 Cyclic nucleotide-binding domain CJD41_RS12830 PF00582 Universal stress protein family CJD41_RS12835 PF10749 Protein of unknown function (DUF2534) CJD41_RS12840 PF00924 Mechanosensitive ion channel CJD41_RS12845 PF00248 Aldo/keto reductase family CJD41_RS12850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS12850 PF03466 LysR substrate binding domain CJD41_RS12860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD41_RS12865 PF00246 Zinc carboxypeptidase CJD41_RS12870 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJD41_RS12870 PF13378 Enolase C-terminal domain-like CJD41_RS12875 PF08534 Redoxin CJD41_RS12880 PF18024 Helix-turn-helix domain CJD41_RS12880 PF00158 Sigma-54 interaction domain CJD41_RS12885 PF05128 Domain of unknown function (DUF697) CJD41_RS12890 PF04317 YcjX-like family, DUF463 CJD41_RS12895 PF00581 Rhodanese-like domain CJD41_RS12900 PF09584 Phage shock protein PspD (Phageshock_PspD) CJD41_RS12905 PF04024 PspC domain CJD41_RS12910 PF06667 Phage shock protein B CJD41_RS12915 PF04012 PspA/IM30 family CJD41_RS12920 PF02954 Bacterial regulatory protein, Fis family CJD41_RS12920 PF00158 Sigma-54 interaction domain CJD41_RS12925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD41_RS12930 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS12935 PF12911 N-terminal TM domain of oligopeptide transport permease C CJD41_RS12935 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS12940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJD41_RS12940 PF00005 ABC transporter CJD41_RS12945 PF00005 ABC transporter CJD41_RS12985 PF00575 S1 RNA binding domain CJD41_RS12985 PF00773 RNB domain CJD41_RS12985 PF08206 Ribonuclease B OB domain CJD41_RS12985 PF17876 Cold shock domain CJD41_RS12995 PF00563 EAL domain CJD41_RS12995 PF13426 PAS domain CJD41_RS12995 PF00990 Diguanylate cyclase, GGDEF domain CJD41_RS13005 PF00455 DeoR C terminal sensor domain CJD41_RS13005 PF08220 DeoR-like helix-turn-helix domain CJD41_RS13010 PF05433 Glycine zipper 2TM domain CJD41_RS13015 PF01253 Translation initiation factor SUI1 CJD41_RS13020 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CJD41_RS13025 PF18073 Rubredoxin metal binding domain CJD41_RS13030 PF06305 Lipopolysaccharide assembly protein A domain CJD41_RS13035 PF01569 PAP2 superfamily CJD41_RS13040 PF00925 GTP cyclohydrolase II CJD41_RS13045 PF00330 Aconitase family (aconitate hydratase) CJD41_RS13045 PF00694 Aconitase C-terminal domain CJD41_RS13060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS13060 PF03466 LysR substrate binding domain CJD41_RS13065 PF01131 DNA topoisomerase CJD41_RS13065 PF08272 Topoisomerase I zinc-ribbon-like CJD41_RS13065 PF01751 Toprim domain CJD41_RS13065 PF01396 Topoisomerase DNA binding C4 zinc finger CJD41_RS13070 PF10692 Protein of unknown function (DUF2498) CJD41_RS13075 PF01343 Peptidase family S49 CJD41_RS13075 PF08496 Peptidase family S49 N-terminal CJD41_RS13080 PF00106 short chain dehydrogenase CJD41_RS13085 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CJD41_RS13090 PF01479 S4 domain CJD41_RS13090 PF00849 RNA pseudouridylate synthase CJD41_RS13095 PF01300 Telomere recombination CJD41_RS13100 PF02811 PHP domain CJD41_RS13105 PF08255 Trp-operon Leader Peptide CJD41_RS13110 PF04715 Anthranilate synthase component I, N terminal region CJD41_RS13110 PF00425 chorismate binding enzyme CJD41_RS13115 PF00117 Glutamine amidotransferase class-I CJD41_RS13115 PF00591 Glycosyl transferase family, a/b domain CJD41_RS13115 PF02885 Glycosyl transferase family, helical bundle domain CJD41_RS13120 PF00218 Indole-3-glycerol phosphate synthase CJD41_RS13120 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CJD41_RS13125 PF00291 Pyridoxal-phosphate dependent enzyme CJD41_RS13130 PF00290 Tryptophan synthase alpha chain CJD41_RS13135 PF10685 Stress-induced bacterial acidophilic repeat motif CJD41_RS13140 PF05974 Domain of unknown function (DUF892) CJD41_RS13145 PF05974 Domain of unknown function (DUF892) CJD41_RS13150 PF05067 Manganese containing catalase CJD41_RS13155 PF03922 OmpW family CJD41_RS13160 PF03692 Putative zinc- or iron-chelating domain CJD41_RS13170 PF04279 Intracellular septation protein A CJD41_RS13175 PF03061 Thioesterase superfamily CJD41_RS13180 PF03544 Gram-negative bacterial TonB protein C-terminal CJD41_RS13185 PF03795 YCII-related domain CJD41_RS13190 PF13396 Phospholipase_D-nuclease N-terminal CJD41_RS13190 PF13091 PLD-like domain CJD41_RS13195 PF04269 Protein of unknown function, DUF440 CJD41_RS13200 PF00027 Cyclic nucleotide-binding domain CJD41_RS13200 PF00520 Ion transport protein CJD41_RS13205 PF00005 ABC transporter CJD41_RS13205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJD41_RS13210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJD41_RS13210 PF00005 ABC transporter CJD41_RS13215 PF12911 N-terminal TM domain of oligopeptide transport permease C CJD41_RS13215 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS13220 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS13225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD41_RS13235 PF01914 MarC family integral membrane protein CJD41_RS13240 PF00171 Aldehyde dehydrogenase family CJD41_RS13240 PF00465 Iron-containing alcohol dehydrogenase CJD41_RS13245 PF00265 Thymidine kinase CJD41_RS13250 PF00816 H-NS histone family CJD41_RS13255 PF00483 Nucleotidyl transferase CJD41_RS13260 PF00072 Response regulator receiver domain CJD41_RS13270 PF02810 SEC-C motif CJD41_RS13275 PF01842 ACT domain CJD41_RS13275 PF00551 Formyl transferase CJD41_RS13310 PF02665 Nitrate reductase gamma subunit CJD41_RS13315 PF02613 Nitrate reductase delta subunit CJD41_RS13320 PF13247 4Fe-4S dicluster domain CJD41_RS13320 PF14711 Respiratory nitrate reductase beta C-terminal CJD41_RS13325 PF01568 Molydopterin dinucleotide binding domain CJD41_RS13325 PF00384 Molybdopterin oxidoreductase CJD41_RS13325 PF14710 Respiratory nitrate reductase alpha N-terminal CJD41_RS13330 PF07690 Major Facilitator Superfamily CJD41_RS13345 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS13345 PF00072 Response regulator receiver domain CJD41_RS13350 PF11924 Inverse autotransporter, beta-domain CJD41_RS13355 PF02635 DsrE/DsrF-like family CJD41_RS13360 PF06150 ChaB CJD41_RS13370 PF00793 DAHP synthetase I family CJD41_RS13375 PF13369 Transglutaminase-like superfamily CJD41_RS13380 PF04247 Invasion gene expression up-regulator, SirB CJD41_RS13385 PF13847 Methyltransferase domain CJD41_RS13385 PF17827 PrmC N-terminal domain CJD41_RS13390 PF03462 PCRF domain CJD41_RS13390 PF00472 RF-1 domain CJD41_RS13395 PF01488 Shikimate / quinate 5-dehydrogenase CJD41_RS13395 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CJD41_RS13395 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CJD41_RS13400 PF03550 Outer membrane lipoprotein LolB CJD41_RS13405 PF08544 GHMP kinases C terminal CJD41_RS13405 PF00288 GHMP kinases N terminal domain CJD41_RS13410 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CJD41_RS13410 PF14572 Phosphoribosyl synthetase-associated domain CJD41_RS13415 PF00916 Sulfate permease family CJD41_RS13415 PF01740 STAS domain CJD41_RS13420 PF10762 Protein of unknown function (DUF2583) CJD41_RS13425 PF01195 Peptidyl-tRNA hydrolase CJD41_RS13430 PF01926 50S ribosome-binding GTPase CJD41_RS13430 PF06071 Protein of unknown function (DUF933) CJD41_RS13450 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CJD41_RS13450 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJD41_RS13455 PF00374 Nickel-dependent hydrogenase CJD41_RS13460 PF01292 Prokaryotic cytochrome b561 CJD41_RS13465 PF01750 Hydrogenase maturation protease CJD41_RS13470 PF07449 Hydrogenase-1 expression protein HyaE CJD41_RS13475 PF04809 HupH hydrogenase expression protein, C-terminal conserved region CJD41_RS13480 PF01654 Cytochrome bd terminal oxidase subunit I CJD41_RS13485 PF02322 Cytochrome bd terminal oxidase subunit II CJD41_RS13490 PF08173 Membrane bound YbgT-like protein CJD41_RS13495 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CJD41_RS13495 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CJD41_RS13500 PF01204 Trehalase CJD41_RS13505 PF04226 Transglycosylase associated protein CJD41_RS13510 PF07238 PilZ domain CJD41_RS13510 PF07317 Flagellar regulator YcgR CJD41_RS13515 PF01464 Transglycosylase SLT domain CJD41_RS13520 PF17676 LD-carboxypeptidase C-terminal domain CJD41_RS13520 PF02016 LD-carboxypeptidase N-terminal domain CJD41_RS13525 PF02080 TrkA-C domain CJD41_RS13525 PF03471 Transporter associated domain CJD41_RS13525 PF00999 Sodium/hydrogen exchanger family CJD41_RS13530 PF01266 FAD dependent oxidoreductase CJD41_RS13535 PF04293 SpoVR like protein CJD41_RS13540 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS13540 PF07840 FadR C-terminal domain CJD41_RS13545 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CJD41_RS13550 PF02600 Disulfide bond formation protein DsbB CJD41_RS13560 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system CJD41_RS13570 PF03692 Putative zinc- or iron-chelating domain CJD41_RS13575 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJD41_RS13580 PF05166 YcgL domain CJD41_RS13585 PF03775 Septum formation inhibitor MinC, C-terminal domain CJD41_RS13585 PF05209 Septum formation inhibitor MinC, N-terminal domain CJD41_RS13590 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJD41_RS13595 PF03776 Septum formation topological specificity factor MinE CJD41_RS13600 PF01612 3'-5' exonuclease CJD41_RS13600 PF00570 HRDC domain CJD41_RS13605 PF13193 AMP-binding enzyme C-terminal domain CJD41_RS13605 PF00501 AMP-binding enzyme CJD41_RS13615 PF03843 Outer membrane lipoprotein Slp family CJD41_RS13620 PF00814 Glycoprotease family CJD41_RS13625 PF04851 Type III restriction enzyme, res subunit CJD41_RS13625 PF13307 Helicase C-terminal domain CJD41_RS13630 PF01042 Endoribonuclease L-PSP CJD41_RS13635 PF03701 Uncharacterised protein family (UPF0181) CJD41_RS13640 PF00425 chorismate binding enzyme CJD41_RS13640 PF04715 Anthranilate synthase component I, N terminal region CJD41_RS13645 PF00293 NUDIX domain CJD41_RS13650 PF03315 Serine dehydratase beta chain CJD41_RS13650 PF03313 Serine dehydratase alpha chain CJD41_RS13655 PF00563 EAL domain CJD41_RS13655 PF12792 CSS motif domain associated with EAL CJD41_RS13660 PF03741 Integral membrane protein TerC family CJD41_RS13660 PF03471 Transporter associated domain CJD41_RS13670 PF03830 PTS system sorbose subfamily IIB component CJD41_RS13670 PF03610 PTS system fructose IIA component CJD41_RS13675 PF03609 PTS system sorbose-specific iic component CJD41_RS13680 PF03613 PTS system mannose/fructose/sorbose family IID component CJD41_RS13695 PF02659 Putative manganese efflux pump CJD41_RS13700 PF13847 Methyltransferase domain CJD41_RS13705 PF03717 Penicillin-binding Protein dimerisation domain CJD41_RS13705 PF00905 Penicillin binding protein transpeptidase domain CJD41_RS13710 PF00313 'Cold-shock' DNA-binding domain CJD41_RS13715 PF10736 Protein of unknown function (DUF2627) CJD41_RS13720 PF13974 YebO-like protein CJD41_RS13725 PF13998 MgrB protein CJD41_RS13730 PF13996 YobH-like protein CJD41_RS13735 PF09339 IclR helix-turn-helix domain CJD41_RS13735 PF01614 Bacterial transcriptional regulator CJD41_RS13740 PF07690 Major Facilitator Superfamily CJD41_RS13745 PF01435 Peptidase family M48 CJD41_RS13750 PF17804 Tail specific protease N-terminal domain CJD41_RS13750 PF11818 C-terminal domain of tail specific protease (DUF3340) CJD41_RS13750 PF00595 PDZ domain CJD41_RS13750 PF03572 Peptidase family S41 CJD41_RS13755 PF04352 ProQ/FINO family CJD41_RS13755 PF17516 ProQ C-terminal domain CJD41_RS13760 PF13185 GAF domain CJD41_RS13765 PF04403 Paraquat-inducible protein A CJD41_RS13770 PF02470 MlaD protein CJD41_RS13775 PF01189 16S rRNA methyltransferase RsmB/F CJD41_RS13775 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CJD41_RS13775 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CJD41_RS13780 PF07351 Protein of unknown function (DUF1480) CJD41_RS13785 PF07358 Protein of unknown function (DUF1482) CJD41_RS13790 PF00149 Calcineurin-like phosphoesterase CJD41_RS13800 PF05364 Salmonella type III secretion SopE effector N-terminus CJD41_RS13800 PF07487 SopE GEF domain CJD41_RS13805 PF07166 Protein of unknown function (DUF1398) CJD41_RS13815 PF00583 Acetyltransferase (GNAT) family CJD41_RS13850 PF00892 EamA-like transporter family CJD41_RS13875 PF02040 Arsenical pump membrane protein CJD41_RS13925 PF12684 PDDEXK-like domain of unknown function (DUF3799) CJD41_RS13925 PF06630 Enterobacterial exodeoxyribonuclease VIII CJD41_RS13950 PF05364 Salmonella type III secretion SopE effector N-terminus CJD41_RS13950 PF07487 SopE GEF domain CJD41_RS13955 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CJD41_RS13995 PF00080 Copper/zinc superoxide dismutase (SODC) CJD41_RS14000 PF13505 Outer membrane protein beta-barrel domain CJD41_RS14050 PF00574 Clp protease CJD41_RS14075 PF03245 Bacteriophage Rz lysis protein CJD41_RS14135 PF00753 Metallo-beta-lactamase superfamily CJD41_RS14135 PF14863 Alkyl sulfatase dimerisation CJD41_RS14135 PF14864 Alkyl sulfatase C-terminal CJD41_RS14140 PF01590 GAF domain CJD41_RS14140 PF00990 Diguanylate cyclase, GGDEF domain CJD41_RS14140 PF00360 Phytochrome region CJD41_RS14140 PF00563 EAL domain CJD41_RS14155 PF07120 Protein of unknown function (DUF1376) CJD41_RS14195 PF12684 PDDEXK-like domain of unknown function (DUF3799) CJD41_RS14195 PF06630 Enterobacterial exodeoxyribonuclease VIII CJD41_RS14200 PF03837 RecT family CJD41_RS14230 PF10709 Protein of unknown function (DUF2511) CJD41_RS14235 PF05425 Copper resistance protein D CJD41_RS14240 PF04234 CopC domain CJD41_RS14245 PF06440 DNA polymerase III, theta subunit CJD41_RS14250 PF00795 Carbon-nitrogen hydrolase CJD41_RS14255 PF00929 Exonuclease CJD41_RS14260 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CJD41_RS14260 PF00326 Prolyl oligopeptidase family CJD41_RS14265 PF04391 Protein of unknown function (DUF533) CJD41_RS14270 PF13995 YebF-like protein CJD41_RS14275 PF07130 YebG protein CJD41_RS14280 PF02222 ATP-grasp domain CJD41_RS14285 PF01081 KDPG and KHG aldolase CJD41_RS14290 PF00920 Dehydratase family CJD41_RS14295 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CJD41_RS14295 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CJD41_RS14305 PF01380 SIS domain CJD41_RS14305 PF01418 Helix-turn-helix domain, rpiR family CJD41_RS14310 PF00224 Pyruvate kinase, barrel domain CJD41_RS14310 PF02887 Pyruvate kinase, alpha/beta domain CJD41_RS14315 PF03279 Bacterial lipid A biosynthesis acyltransferase CJD41_RS14325 PF01551 Peptidase family M23 CJD41_RS14325 PF08525 Opacity-associated protein A N-terminal motif CJD41_RS14325 PF01476 LysM domain CJD41_RS14330 PF01297 Zinc-uptake complex component A periplasmic CJD41_RS14335 PF00005 ABC transporter CJD41_RS14340 PF00950 ABC 3 transport family CJD41_RS14345 PF17864 RuvB AAA lid domain CJD41_RS14345 PF05491 RuvB C-terminal winged helix domain CJD41_RS14345 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJD41_RS14350 PF01330 RuvA N terminal domain CJD41_RS14350 PF07499 RuvA, C-terminal domain CJD41_RS14360 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CJD41_RS14365 PF02075 Crossover junction endodeoxyribonuclease RuvC CJD41_RS14370 PF01709 Transcriptional regulator CJD41_RS14375 PF00293 NUDIX domain CJD41_RS14380 PF02938 GAD domain CJD41_RS14380 PF01336 OB-fold nucleic acid binding domain CJD41_RS14380 PF00152 tRNA synthetases class II (D, K and N) CJD41_RS14390 PF01904 Protein of unknown function DUF72 CJD41_RS14395 PF01124 MAPEG family CJD41_RS14400 PF13649 Methyltransferase domain CJD41_RS14405 PF08003 Protein of unknown function (DUF1698) CJD41_RS14415 PF03932 CutC family CJD41_RS14420 PF06185 YecM protein CJD41_RS14425 PF00750 tRNA synthetases class I (R) CJD41_RS14425 PF05746 DALR anticodon binding domain CJD41_RS14425 PF03485 Arginyl tRNA synthetase N terminal domain CJD41_RS14430 PF00905 Penicillin binding protein transpeptidase domain CJD41_RS14430 PF03717 Penicillin-binding Protein dimerisation domain CJD41_RS14435 PF07470 Glycosyl Hydrolase Family 88 CJD41_RS14440 PF06366 Flagellar protein FlhE CJD41_RS14445 PF00771 FHIPEP family CJD41_RS14455 PF04344 Chemotaxis phosphatase, CheZ CJD41_RS14460 PF00072 Response regulator receiver domain CJD41_RS14465 PF01339 CheB methylesterase CJD41_RS14465 PF00072 Response regulator receiver domain CJD41_RS14470 PF03705 CheR methyltransferase, all-alpha domain CJD41_RS14470 PF01739 CheR methyltransferase, SAM binding domain CJD41_RS14475 PF02203 Tar ligand binding domain homologue CJD41_RS14475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJD41_RS14475 PF00672 HAMP domain CJD41_RS14480 PF01584 CheW-like domain CJD41_RS14485 PF09078 CheY binding CJD41_RS14485 PF02895 Signal transducing histidine kinase, homodimeric domain CJD41_RS14485 PF01627 Hpt domain CJD41_RS14485 PF01584 CheW-like domain CJD41_RS14485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS14490 PF00691 OmpA family CJD41_RS14490 PF13677 Membrane MotB of proton-channel complex MotA/MotB CJD41_RS14495 PF01618 MotA/TolQ/ExbB proton channel family CJD41_RS14500 PF05280 Flagellar transcriptional activator (FlhC) CJD41_RS14505 PF05247 Flagellar transcriptional activator (FlhD) CJD41_RS14515 PF00582 Universal stress protein family CJD41_RS14520 PF00982 Glycosyltransferase family 20 CJD41_RS14525 PF02358 Trehalose-phosphatase CJD41_RS14530 PF02653 Branched-chain amino acid transport system / permease component CJD41_RS14540 PF00210 Ferritin-like domain CJD41_RS14550 PF13992 YecR-like lipoprotein CJD41_RS14555 PF00210 Ferritin-like domain CJD41_RS14560 PF10678 Protein of unknown function (DUF2492) CJD41_RS14565 PF03222 Tryptophan/tyrosine permease family CJD41_RS14605 PF01066 CDP-alcohol phosphatidyltransferase CJD41_RS14610 PF02151 UvrB/uvrC motif CJD41_RS14610 PF01541 GIY-YIG catalytic domain CJD41_RS14610 PF08459 UvrC Helix-hairpin-helix N-terminal CJD41_RS14615 PF00072 Response regulator receiver domain CJD41_RS14615 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS14625 PF10769 Protein of unknown function (DUF2594) CJD41_RS14630 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS14630 PF03472 Autoinducer binding domain CJD41_RS14635 PF00005 ABC transporter CJD41_RS14640 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS14645 PF00291 Pyridoxal-phosphate dependent enzyme CJD41_RS14650 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJD41_RS14655 PF02899 Phage integrase, N-terminal SAM-like domain CJD41_RS14660 PF04539 Sigma-70 region 3 CJD41_RS14660 PF04545 Sigma-70, region 4 CJD41_RS14660 PF04542 Sigma-70 region 2 CJD41_RS14670 PF00700 Bacterial flagellin C-terminal helical region CJD41_RS14670 PF00669 Bacterial flagellin N-terminal helical region CJD41_RS14680 PF07196 Flagellin hook IN motif CJD41_RS14680 PF07195 Flagellar hook-associated protein 2 C-terminus CJD41_RS14680 PF02465 Flagellar hook-associated protein 2 N-terminus CJD41_RS14685 PF02561 Flagellar protein FliS CJD41_RS14690 PF05400 Flagellar protein FliT CJD41_RS14695 PF00128 Alpha amylase, catalytic domain CJD41_RS14695 PF02806 Alpha amylase, C-terminal all-beta domain CJD41_RS14700 PF13987 YedD-like protein CJD41_RS14705 PF04143 Sulphur transport CJD41_RS14710 PF01206 Sulfurtransferase TusA CJD41_RS14720 PF02049 Flagellar hook-basal body complex protein FliE CJD41_RS14725 PF08345 Flagellar M-ring protein C-terminal CJD41_RS14725 PF01514 Secretory protein of YscJ/FliF family CJD41_RS14730 PF14841 FliG middle domain CJD41_RS14730 PF01706 FliG C-terminal domain CJD41_RS14730 PF14842 FliG N-terminal domain CJD41_RS14735 PF02108 Flagellar assembly protein FliH CJD41_RS14740 PF18269 T3SS EscN ATPase C-terminal domain CJD41_RS14740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJD41_RS14745 PF02050 Flagellar FliJ protein CJD41_RS14750 PF02120 Flagellar hook-length control protein FliK CJD41_RS14755 PF03748 Flagellar basal body-associated protein FliL CJD41_RS14760 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJD41_RS14760 PF02154 Flagellar motor switch protein FliM CJD41_RS14765 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJD41_RS14765 PF16973 Flagellar motor switch protein FliN N-terminal CJD41_RS14770 PF04347 Flagellar biosynthesis protein, FliO CJD41_RS14775 PF00813 FliP family CJD41_RS14780 PF01313 Bacterial export proteins, family 3 CJD41_RS14785 PF01311 Bacterial export proteins, family 1 CJD41_RS14790 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS14795 PF10781 Dextransucrase DSRB CJD41_RS14800 PF10733 Protein of unknown function (DUF2525) CJD41_RS14810 PF17151 Periplasmic sensor domain CJD41_RS14810 PF00990 Diguanylate cyclase, GGDEF domain CJD41_RS14815 PF09926 Uncharacterized small protein (DUF2158) CJD41_RS14820 PF05661 Protein of unknown function (DUF808) CJD41_RS14825 PF00892 EamA-like transporter family CJD41_RS14830 PF03852 DNA mismatch endonuclease Vsr CJD41_RS14835 PF00145 C-5 cytosine-specific DNA methylase CJD41_RS14835 PF18284 DNA methylase N-terminal domain CJD41_RS14840 PF01966 HD domain CJD41_RS14855 PF00267 Gram-negative porin CJD41_RS14865 PF00313 'Cold-shock' DNA-binding domain CJD41_RS14895 PF03527 RHS protein CJD41_RS14895 PF05593 RHS Repeat CJD41_RS14905 PF03527 RHS protein CJD41_RS14905 PF05593 RHS Repeat CJD41_RS14920 PF04717 Type VI secretion system, phage-baseplate injector CJD41_RS14925 PF05638 Type VI secretion system effector, Hcp CJD41_RS14940 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CJD41_RS14950 PF05947 Type VI secretion system, TssF CJD41_RS14970 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CJD41_RS14980 PF10431 C-terminal, D2-small domain, of ClpB protein CJD41_RS14980 PF17871 AAA lid domain CJD41_RS14980 PF00004 ATPase family associated with various cellular activities (AAA) CJD41_RS14980 PF07724 AAA domain (Cdc48 subfamily) CJD41_RS14995 PF06761 Intracellular multiplication and human macrophage-killing CJD41_RS14995 PF14331 ImcF-related N-terminal domain CJD41_RS14995 PF06744 Type VI secretion protein IcmF C-terminal CJD41_RS15005 PF05638 Type VI secretion system effector, Hcp CJD41_RS15045 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJD41_RS15045 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJD41_RS15050 PF07690 Major Facilitator Superfamily CJD41_RS15055 PF06178 Oligogalacturonate-specific porin protein (KdgM) CJD41_RS15060 PF01344 Kelch motif CJD41_RS15065 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CJD41_RS15075 PF00474 Sodium:solute symporter family CJD41_RS15080 PF01418 Helix-turn-helix domain, rpiR family CJD41_RS15080 PF01380 SIS domain CJD41_RS15085 PF02562 PhoH-like protein CJD41_RS15095 PF00474 Sodium:solute symporter family CJD41_RS15105 PF00171 Aldehyde dehydrogenase family CJD41_RS15105 PF01619 Proline dehydrogenase CJD41_RS15105 PF14850 DNA-binding domain of Proline dehydrogenase CJD41_RS15105 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CJD41_RS15115 PF00440 Bacterial regulatory proteins, tetR family CJD41_RS15115 PF08362 YcdC-like protein, C-terminal region CJD41_RS15120 PF10685 Stress-induced bacterial acidophilic repeat motif CJD41_RS15130 PF03358 NADPH-dependent FMN reductase CJD41_RS15135 PF13993 YccJ-like protein CJD41_RS15140 PF00328 Histidine phosphatase superfamily (branch 2) CJD41_RS15145 PF00578 AhpC/TSA family CJD41_RS15150 PF06965 Na+/H+ antiporter 1 CJD41_RS15150 PF13462 Thioredoxin CJD41_RS15155 PF11412 Disulphide bond corrector protein DsbC CJD41_RS15155 PF02683 Cytochrome C biogenesis protein transmembrane region CJD41_RS15155 PF13098 Thioredoxin-like domain CJD41_RS15170 PF00226 DnaJ domain CJD41_RS15170 PF01556 DnaJ C terminal domain CJD41_RS15190 PF12706 Beta-lactamase superfamily domain CJD41_RS15200 PF07690 Major Facilitator Superfamily CJD41_RS15210 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJD41_RS15215 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CJD41_RS15220 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CJD41_RS15225 PF00171 Aldehyde dehydrogenase family CJD41_RS15235 PF01047 MarR family CJD41_RS15240 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CJD41_RS15240 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CJD41_RS15245 PF01613 Flavin reductase like domain CJD41_RS15255 PF00576 HIUase/Transthyretin family CJD41_RS15260 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS15260 PF00072 Response regulator receiver domain CJD41_RS15265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS15265 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS15270 PF03577 Peptidase family C69 CJD41_RS15280 PF13132 Domain of unknown function (DUF3950) CJD41_RS15285 PF05925 Enterobacterial virulence protein IpgD CJD41_RS15290 PF07824 Type III secretion chaperone domain CJD41_RS15300 PF00805 Pentapeptide repeats (8 copies) CJD41_RS15315 PF01027 Inhibitor of apoptosis-promoting Bax1 CJD41_RS15320 PF04358 DsrC like protein CJD41_RS15325 PF00708 Acylphosphatase CJD41_RS15330 PF12833 Helix-turn-helix domain CJD41_RS15335 PF01161 Phosphatidylethanolamine-binding protein CJD41_RS15340 PF17785 PUA-like domain CJD41_RS15340 PF10672 S-adenosylmethionine-dependent methyltransferase CJD41_RS15345 PF08755 Hemimethylated DNA-binding protein YccV like CJD41_RS15350 PF13380 CoA binding domain CJD41_RS15355 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CJD41_RS15360 PF02142 MGS-like domain CJD41_RS15365 PF00580 UvrD/REP helicase N-terminal domain CJD41_RS15365 PF12462 DNA helicase IV / RNA helicase N terminal CJD41_RS15365 PF13361 UvrD-like helicase C-terminal domain CJD41_RS15370 PF03733 Inner membrane component domain CJD41_RS15375 PF12805 FUSC-like inner membrane protein yccS CJD41_RS15380 PF04994 TfoX C-terminal domain CJD41_RS15380 PF04993 TfoX N-terminal domain CJD41_RS15385 PF03846 Cell division inhibitor SulA CJD41_RS15390 PF01389 OmpA-like transmembrane domain CJD41_RS15390 PF00691 OmpA family CJD41_RS15395 PF17414 MatP C-terminal ribbon-helix-helix domain CJD41_RS15395 PF06303 MatP N-terminal domain CJD41_RS15400 PF13654 AAA domain CJD41_RS15400 PF05362 Lon protease (S16) C-terminal proteolytic domain CJD41_RS15405 PF07977 FabA-like domain CJD41_RS15410 PF04957 Ribosome modulation factor CJD41_RS15415 PF03886 ABC-type transport auxiliary lipoprotein component CJD41_RS15420 PF02470 MlaD protein CJD41_RS15425 PF04403 Paraquat-inducible protein A CJD41_RS15430 PF16326 ABC transporter C-terminal domain CJD41_RS15430 PF00005 ABC transporter CJD41_RS15430 PF12848 ABC transporter CJD41_RS15435 PF10672 S-adenosylmethionine-dependent methyltransferase CJD41_RS15435 PF02926 THUMP domain CJD41_RS15435 PF01170 Putative RNA methylase family UPF0020 CJD41_RS15440 PF00111 2Fe-2S iron-sulfur cluster binding domain CJD41_RS15440 PF03476 MOSC N-terminal beta barrel domain CJD41_RS15440 PF03473 MOSC domain CJD41_RS15445 PF07126 Cell-division protein ZapC CJD41_RS15450 PF01180 Dihydroorotate dehydrogenase CJD41_RS15455 PF01433 Peptidase family M1 domain CJD41_RS15455 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CJD41_RS15455 PF11940 Domain of unknown function (DUF3458) Ig-like fold CJD41_RS15460 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CJD41_RS15460 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CJD41_RS15465 PF01235 Sodium:alanine symporter family CJD41_RS15470 PF00291 Pyridoxal-phosphate dependent enzyme CJD41_RS15480 PF01037 Lrp/AsnC ligand binding domain CJD41_RS15480 PF13404 AsnC-type helix-turn-helix domain CJD41_RS15485 PF01336 OB-fold nucleic acid binding domain CJD41_RS15485 PF00152 tRNA synthetases class II (D, K and N) CJD41_RS15490 PF00267 Gram-negative porin CJD41_RS15495 PF00155 Aminotransferase class I and II CJD41_RS15500 PF00753 Metallo-beta-lactamase superfamily CJD41_RS15505 PF05951 Bacterial protein of unknown function (DUF882) CJD41_RS15515 PF03734 L,D-transpeptidase catalytic domain CJD41_RS15515 PF01471 Putative peptidoglycan binding domain CJD41_RS15520 PF04310 MukB N-terminal CJD41_RS15520 PF16330 MukB hinge domain CJD41_RS15525 PF04288 MukE-like family CJD41_RS15530 PF17193 MukF C-terminal domain CJD41_RS15530 PF17192 MukF middle domain CJD41_RS15530 PF03882 MukF winged-helix domain CJD41_RS15535 PF13847 Methyltransferase domain CJD41_RS15540 PF02698 DUF218 domain CJD41_RS15545 PF01636 Phosphotransferase enzyme family CJD41_RS15550 PF02348 Cytidylyltransferase CJD41_RS15555 PF03966 Trm112p-like protein CJD41_RS15565 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CJD41_RS15570 PF00005 ABC transporter CJD41_RS15570 PF00664 ABC transporter transmembrane region CJD41_RS15575 PF00753 Metallo-beta-lactamase superfamily CJD41_RS15575 PF03772 Competence protein CJD41_RS15580 PF00216 Bacterial DNA-binding protein CJD41_RS15585 PF00575 S1 RNA binding domain CJD41_RS15590 PF02224 Cytidylate kinase CJD41_RS15595 PF01435 Peptidase family M48 CJD41_RS15600 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJD41_RS15605 PF00266 Aminotransferase class-V CJD41_RS15610 PF04239 Protein of unknown function (DUF421) CJD41_RS15615 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CJD41_RS15615 PF18381 YcaO cyclodehydratase C-terminal domain CJD41_RS15620 PF01226 Formate/nitrite transporter CJD41_RS15625 PF01228 Glycine radical CJD41_RS15625 PF02901 Pyruvate formate lyase-like CJD41_RS15630 PF11047 Salmonella outer protein D CJD41_RS15640 PF04055 Radical SAM superfamily CJD41_RS15645 PF13520 Amino acid permease CJD41_RS15650 PF07690 Major Facilitator Superfamily CJD41_RS15655 PF04976 DMSO reductase anchor subunit (DmsC) CJD41_RS15660 PF13247 4Fe-4S dicluster domain CJD41_RS15660 PF12800 4Fe-4S binding domain CJD41_RS15670 PF02403 Seryl-tRNA synthetase N-terminal domain CJD41_RS15670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJD41_RS15675 PF12002 MgsA AAA+ ATPase C terminal CJD41_RS15675 PF00004 ATPase family associated with various cellular activities (AAA) CJD41_RS15675 PF16193 AAA C-terminal domain CJD41_RS15680 PF03548 Outer membrane lipoprotein carrier protein LolA CJD41_RS15685 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CJD41_RS15685 PF01580 FtsK/SpoIIIE family CJD41_RS15685 PF17854 FtsK alpha domain CJD41_RS15685 PF09397 Ftsk gamma domain CJD41_RS15690 PF01037 Lrp/AsnC ligand binding domain CJD41_RS15695 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS15700 PF00664 ABC transporter transmembrane region CJD41_RS15700 PF00005 ABC transporter CJD41_RS15705 PF00005 ABC transporter CJD41_RS15705 PF00664 ABC transporter transmembrane region CJD41_RS15710 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CJD41_RS15720 PF01176 Translation initiation factor 1A / IF-1 CJD41_RS15725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS15725 PF03466 LysR substrate binding domain CJD41_RS15735 PF00857 Isochorismatase family CJD41_RS15760 PF07724 AAA domain (Cdc48 subfamily) CJD41_RS15760 PF17871 AAA lid domain CJD41_RS15760 PF02861 Clp amino terminal domain, pathogenicity island component CJD41_RS15760 PF10431 C-terminal, D2-small domain, of ClpB protein CJD41_RS15760 PF00004 ATPase family associated with various cellular activities (AAA) CJD41_RS15765 PF02617 ATP-dependent Clp protease adaptor protein ClpS CJD41_RS15770 PF00313 'Cold-shock' DNA-binding domain CJD41_RS15780 PF12704 MacB-like periplasmic core domain CJD41_RS15780 PF02687 FtsX-like permease family CJD41_RS15780 PF00005 ABC transporter CJD41_RS15785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJD41_RS15790 PF04393 Protein of unknown function (DUF535) CJD41_RS15795 PF11398 Protein of unknown function (DUF2813) CJD41_RS15805 PF03956 Lysine exporter LysO CJD41_RS15810 PF03063 Prismane/CO dehydrogenase family CJD41_RS15815 PF00175 Oxidoreductase NAD-binding domain CJD41_RS15815 PF00970 Oxidoreductase FAD-binding domain CJD41_RS15815 PF00111 2Fe-2S iron-sulfur cluster binding domain CJD41_RS15820 PF00205 Thiamine pyrophosphate enzyme, central domain CJD41_RS15820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJD41_RS15820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJD41_RS15825 PF01212 Beta-eliminating lyase CJD41_RS15830 PF13460 NAD(P)H-binding CJD41_RS15830 PF11066 Protein of unknown function (DUF2867) CJD41_RS15835 PF01370 NAD dependent epimerase/dehydratase family CJD41_RS15850 PF12883 Protein of unknown function (DUF3828) CJD41_RS15855 PF00005 ABC transporter CJD41_RS15860 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJD41_RS15865 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS15870 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS15875 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJD41_RS15895 PF03611 PTS system sugar-specific permease component CJD41_RS15900 PF05958 tRNA (Uracil-5-)-methyltransferase CJD41_RS15905 PF10767 Protein of unknown function (DUF2593) CJD41_RS15910 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS15915 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS15920 PF00005 ABC transporter CJD41_RS15920 PF08402 TOBE domain CJD41_RS15925 PF13416 Bacterial extracellular solute-binding protein CJD41_RS15930 PF10722 Putative bacterial sensory transduction regulator CJD41_RS15935 PF18030 RimK PreATP-grasp domain CJD41_RS15935 PF08443 RimK-like ATP-grasp domain CJD41_RS15940 PF00881 Nitroreductase family CJD41_RS15945 PF07214 Protein of unknown function (DUF1418) CJD41_RS15950 PF00462 Glutaredoxin CJD41_RS15955 PF11045 Putative inner membrane protein of Enterobacteriaceae CJD41_RS15960 PF06826 Predicted Permease Membrane Region CJD41_RS15960 PF02080 TrkA-C domain CJD41_RS15970 PF00440 Bacterial regulatory proteins, tetR family CJD41_RS15975 PF07690 Major Facilitator Superfamily CJD41_RS15985 PF07690 Major Facilitator Superfamily CJD41_RS15990 PF01569 PAP2 superfamily CJD41_RS15995 PF00455 DeoR C terminal sensor domain CJD41_RS15995 PF08220 DeoR-like helix-turn-helix domain CJD41_RS16000 PF07943 Penicillin-binding protein 5, C-terminal domain CJD41_RS16000 PF00768 D-alanyl-D-alanine carboxypeptidase CJD41_RS16005 PF13417 Glutathione S-transferase, N-terminal domain CJD41_RS16005 PF00043 Glutathione S-transferase, C-terminal domain CJD41_RS16025 PF03466 LysR substrate binding domain CJD41_RS16025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS16040 PF02770 Acyl-CoA dehydrogenase, middle domain CJD41_RS16040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJD41_RS16040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJD41_RS16050 PF01012 Electron transfer flavoprotein domain CJD41_RS16050 PF00766 Electron transfer flavoprotein FAD-binding domain CJD41_RS16055 PF01012 Electron transfer flavoprotein domain CJD41_RS16060 PF03328 HpcH/HpaI aldolase/citrate lyase family CJD41_RS16065 PF10799 Biofilm formation protein (YliH/bssR) CJD41_RS16070 PF00919 Uncharacterized protein family UPF0004 CJD41_RS16070 PF04055 Radical SAM superfamily CJD41_RS16070 PF18693 TRAM domain CJD41_RS16075 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS16075 PF12911 N-terminal TM domain of oligopeptide transport permease C CJD41_RS16080 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS16085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD41_RS16090 PF00005 ABC transporter CJD41_RS16090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJD41_RS16095 PF01112 Asparaginase CJD41_RS16100 PF00994 Probable molybdopterin binding domain CJD41_RS16100 PF03453 MoeA N-terminal region (domain I and II) CJD41_RS16100 PF03454 MoeA C-terminal region (domain IV) CJD41_RS16105 PF00899 ThiF family CJD41_RS16110 PF04055 Radical SAM superfamily CJD41_RS16115 PF01228 Glycine radical CJD41_RS16115 PF02901 Pyruvate formate lyase-like CJD41_RS16125 PF07350 Protein of unknown function (DUF1479) CJD41_RS16130 PF12848 ABC transporter CJD41_RS16130 PF00005 ABC transporter CJD41_RS16135 PF17969 L,D-transpeptidase C-terminal domain CJD41_RS16135 PF03734 L,D-transpeptidase catalytic domain CJD41_RS16140 PF03600 Citrate transporter CJD41_RS16145 PF02742 Iron dependent repressor, metal binding and dimerisation domain CJD41_RS16145 PF01325 Iron dependent repressor, N-terminal DNA binding domain CJD41_RS16155 PF00884 Sulfatase CJD41_RS16160 PF13505 Outer membrane protein beta-barrel domain CJD41_RS16165 PF00892 EamA-like transporter family CJD41_RS16170 PF00210 Ferritin-like domain CJD41_RS16175 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJD41_RS16180 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS16185 PF00005 ABC transporter CJD41_RS16190 PF00924 Mechanosensitive ion channel CJD41_RS16195 PF05971 RNA methyltransferase CJD41_RS16200 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJD41_RS16205 PF07338 Protein of unknown function (DUF1471) CJD41_RS16210 PF02885 Glycosyl transferase family, helical bundle domain CJD41_RS16215 PF13307 Helicase C-terminal domain CJD41_RS16215 PF06733 DEAD_2 CJD41_RS16220 PF00271 Helicase conserved C-terminal domain CJD41_RS16220 PF00270 DEAD/DEAH box helicase CJD41_RS16225 PF00440 Bacterial regulatory proteins, tetR family CJD41_RS16225 PF09209 Tetracyclin repressor-like, C-terminal domain CJD41_RS16235 PF00005 ABC transporter CJD41_RS16250 PF11076 Putative inner membrane protein YbhQ CJD41_RS16255 PF03372 Endonuclease/Exonuclease/phosphatase family CJD41_RS16260 PF13091 PLD-like domain CJD41_RS16265 PF03706 Lysylphosphatidylglycerol synthase TM region CJD41_RS16290 PF01027 Inhibitor of apoptosis-promoting Bax1 CJD41_RS16295 PF02391 MoaE protein CJD41_RS16300 PF02597 ThiS family CJD41_RS16305 PF01967 MoaC family CJD41_RS16310 PF00994 Probable molybdopterin binding domain CJD41_RS16315 PF04055 Radical SAM superfamily CJD41_RS16315 PF06463 Molybdenum Cofactor Synthesis C CJD41_RS16320 PF01933 Uncharacterised protein family UPF0052 CJD41_RS16335 PF02151 UvrB/uvrC motif CJD41_RS16335 PF04851 Type III restriction enzyme, res subunit CJD41_RS16335 PF12344 Ultra-violet resistance protein B CJD41_RS16335 PF00271 Helicase conserved C-terminal domain CJD41_RS16335 PF17757 UvrB interaction domain CJD41_RS16350 PF08241 Methyltransferase domain CJD41_RS16355 PF00155 Aminotransferase class I and II CJD41_RS16360 PF06968 Biotin and Thiamin Synthesis associated domain CJD41_RS16360 PF04055 Radical SAM superfamily CJD41_RS16365 PF00202 Aminotransferase class-III CJD41_RS16370 PF01161 Phosphatidylethanolamine-binding protein CJD41_RS16375 PF00221 Aromatic amino acid lyase CJD41_RS16380 PF17392 Urocanase C-terminal domain CJD41_RS16380 PF01175 Urocanase Rossmann-like domain CJD41_RS16380 PF17391 Urocanase N-terminal domain CJD41_RS16385 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS16385 PF07702 UTRA domain CJD41_RS16390 PF00491 Arginase family CJD41_RS16395 PF01979 Amidohydrolase family CJD41_RS16400 PF01095 Pectinesterase CJD41_RS16405 PF10282 Lactonase, 7-bladed beta-propeller CJD41_RS16415 PF03459 TOBE domain CJD41_RS16415 PF00005 ABC transporter CJD41_RS16420 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS16430 PF10766 Multidrug efflux pump-associated protein AcrZ CJD41_RS16435 PF03459 TOBE domain CJD41_RS16435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS16440 PF00005 ABC transporter CJD41_RS16450 PF16363 GDP-mannose 4,6 dehydratase CJD41_RS16455 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CJD41_RS16455 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CJD41_RS16460 PF00288 GHMP kinases N terminal domain CJD41_RS16460 PF10509 Galactokinase galactose-binding signature CJD41_RS16460 PF08544 GHMP kinases C terminal CJD41_RS16465 PF01263 Aldose 1-epimerase CJD41_RS16475 PF00300 Histidine phosphatase superfamily (branch 1) CJD41_RS16480 PF00005 ABC transporter CJD41_RS16485 PF01032 FecCD transport family CJD41_RS16490 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CJD41_RS16500 PF00682 HMGL-like CJD41_RS16500 PF02436 Conserved carboxylase domain CJD41_RS16500 PF00364 Biotin-requiring enzyme CJD41_RS16505 PF04277 Oxaloacetate decarboxylase, gamma chain CJD41_RS16510 PF03600 Citrate transporter CJD41_RS16510 PF02080 TrkA-C domain CJD41_RS16515 PF03466 LysR substrate binding domain CJD41_RS16515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS16520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS16520 PF03466 LysR substrate binding domain CJD41_RS16525 PF05681 Fumarate hydratase (Fumerase) CJD41_RS16530 PF05683 Fumarase C-terminus CJD41_RS16530 PF05681 Fumarate hydratase (Fumerase) CJD41_RS16535 PF00793 DAHP synthetase I family CJD41_RS16540 PF13985 YbgS-like protein CJD41_RS16545 PF01545 Cation efflux family CJD41_RS16550 PF04973 Nicotinamide mononucleotide transporter CJD41_RS16555 PF02445 Quinolinate synthetase A protein CJD41_RS16580 PF16331 TolA binding protein trimerisation CJD41_RS16580 PF13174 Tetratricopeptide repeat CJD41_RS16585 PF00691 OmpA family CJD41_RS16590 PF04052 TolB amino-terminal domain CJD41_RS16590 PF07676 WD40-like Beta Propeller Repeat CJD41_RS16595 PF06519 TolA C-terminal CJD41_RS16600 PF02472 Biopolymer transport protein ExbD/TolR CJD41_RS16605 PF01618 MotA/TolQ/ExbB proton channel family CJD41_RS16610 PF03061 Thioesterase superfamily CJD41_RS16615 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CJD41_RS16620 PF08173 Membrane bound YbgT-like protein CJD41_RS16625 PF02322 Cytochrome bd terminal oxidase subunit II CJD41_RS16630 PF01654 Cytochrome bd terminal oxidase subunit I CJD41_RS16635 PF02629 CoA binding domain CJD41_RS16635 PF00549 CoA-ligase CJD41_RS16640 PF08442 ATP-grasp domain CJD41_RS16640 PF00549 CoA-ligase CJD41_RS16645 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJD41_RS16645 PF00364 Biotin-requiring enzyme CJD41_RS16645 PF02817 e3 binding domain CJD41_RS16650 PF16078 2-oxoglutarate dehydrogenase N-terminus CJD41_RS16650 PF00676 Dehydrogenase E1 component CJD41_RS16650 PF16870 2-oxoglutarate dehydrogenase C-terminal CJD41_RS16650 PF02779 Transketolase, pyrimidine binding domain CJD41_RS16655 PF13085 2Fe-2S iron-sulfur cluster binding domain CJD41_RS16660 PF02910 Fumarate reductase flavoprotein C-term CJD41_RS16660 PF00890 FAD binding domain CJD41_RS16665 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CJD41_RS16670 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CJD41_RS16675 PF00285 Citrate synthase, C-terminal domain CJD41_RS16680 PF05145 Transition state regulatory protein AbrB CJD41_RS16685 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CJD41_RS16685 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CJD41_RS16685 PF06827 Zinc finger found in FPG and IleRS CJD41_RS16690 PF03746 LamB/YcsF family CJD41_RS16695 PF02626 Carboxyltransferase domain, subdomain A and B CJD41_RS16700 PF02682 Carboxyltransferase domain, subdomain C and D CJD41_RS16705 PF01784 NIF3 (NGG1p interacting factor 3) CJD41_RS16720 PF03441 FAD binding domain of DNA photolyase CJD41_RS16720 PF00875 DNA photolyase CJD41_RS16725 PF10725 Protein of unknown function (DUF2517) CJD41_RS16730 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) CJD41_RS16735 PF03814 Potassium-transporting ATPase A subunit CJD41_RS16745 PF02669 K+-transporting ATPase, c chain CJD41_RS16750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS16750 PF13492 GAF domain CJD41_RS16750 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS16750 PF02702 Osmosensitive K+ channel His kinase sensor domain CJD41_RS16750 PF13493 Domain of unknown function (DUF4118) CJD41_RS16755 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS16755 PF00072 Response regulator receiver domain CJD41_RS16760 PF10940 Protein of unknown function (DUF2618) CJD41_RS16765 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CJD41_RS16765 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CJD41_RS16765 PF01276 Orn/Lys/Arg decarboxylase, major domain CJD41_RS16770 PF13520 Amino acid permease CJD41_RS16780 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJD41_RS16780 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJD41_RS16780 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJD41_RS16780 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJD41_RS16785 PF03925 SeqA protein C-terminal domain CJD41_RS16785 PF17206 SeqA protein N-terminal domain CJD41_RS16790 PF12697 Alpha/beta hydrolase family CJD41_RS16795 PF01402 Ribbon-helix-helix protein, copG family CJD41_RS16800 PF00258 Flavodoxin CJD41_RS16805 PF01475 Ferric uptake regulator family CJD41_RS16810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS16810 PF03466 LysR substrate binding domain CJD41_RS16815 PF14537 Cytochrome c3 CJD41_RS16815 PF00890 FAD binding domain CJD41_RS16825 PF07690 Major Facilitator Superfamily CJD41_RS16830 PF13982 YbfN-like lipoprotein CJD41_RS16835 PF03573 outer membrane porin, OprD family CJD41_RS16840 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CJD41_RS16840 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJD41_RS16845 PF00367 phosphotransferase system, EIIB CJD41_RS16845 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CJD41_RS16845 PF02378 Phosphotransferase system, EIIC CJD41_RS16850 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CJD41_RS16855 PF01979 Amidohydrolase family CJD41_RS16860 PF00480 ROK family CJD41_RS16860 PF01047 MarR family CJD41_RS16865 PF13344 Haloacid dehalogenase-like hydrolase CJD41_RS16870 PF13537 Glutamine amidotransferase domain CJD41_RS16870 PF00733 Asparagine synthase CJD41_RS16905 PF01494 FAD binding domain CJD41_RS16910 PF00919 Uncharacterized protein family UPF0004 CJD41_RS16910 PF04055 Radical SAM superfamily CJD41_RS16910 PF01938 TRAM domain CJD41_RS16915 PF02562 PhoH-like protein CJD41_RS16920 PF02130 Uncharacterized protein family UPF0054 CJD41_RS16925 PF03471 Transporter associated domain CJD41_RS16925 PF00571 CBS domain CJD41_RS16930 PF00795 Carbon-nitrogen hydrolase CJD41_RS16935 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJD41_RS16940 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS16945 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS16950 PF00005 ABC transporter CJD41_RS16955 PF01156 Inosine-uridine preferring nucleoside hydrolase CJD41_RS16965 PF00012 Hsp70 protein CJD41_RS16975 PF06889 Protein of unknown function (DUF1266) CJD41_RS16985 PF06889 Protein of unknown function (DUF1266) CJD41_RS16995 PF07295 Zinc-ribbon containing domain CJD41_RS17000 PF00158 Sigma-54 interaction domain CJD41_RS17000 PF02954 Bacterial regulatory protein, Fis family CJD41_RS17000 PF00989 PAS fold CJD41_RS17005 PF03812 2-keto-3-deoxygluconate permease CJD41_RS17010 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CJD41_RS17020 PF00133 tRNA synthetases class I (I, L, M and V) CJD41_RS17020 PF08264 Anticodon-binding domain of tRNA CJD41_RS17020 PF13603 Leucyl-tRNA synthetase, Domain 2 CJD41_RS17025 PF04390 Lipopolysaccharide-assembly CJD41_RS17030 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CJD41_RS17030 PF06144 DNA polymerase III, delta subunit CJD41_RS17035 PF01467 Cytidylyltransferase-like CJD41_RS17040 PF00155 Aminotransferase class I and II CJD41_RS17045 PF00300 Histidine phosphatase superfamily (branch 1) CJD41_RS17055 PF02590 Predicted SPOUT methyltransferase CJD41_RS17060 PF00905 Penicillin binding protein transpeptidase domain CJD41_RS17060 PF03717 Penicillin-binding Protein dimerisation domain CJD41_RS17065 PF01098 Cell cycle protein CJD41_RS17070 PF03330 Lytic transglycolase CJD41_RS17070 PF05036 Sporulation related domain CJD41_RS17075 PF07943 Penicillin-binding protein 5, C-terminal domain CJD41_RS17075 PF00768 D-alanyl-D-alanine carboxypeptidase CJD41_RS17080 PF04359 Protein of unknown function (DUF493) CJD41_RS17085 PF03099 Biotin/lipoate A/B protein ligase family CJD41_RS17090 PF03466 LysR substrate binding domain CJD41_RS17090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS17095 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CJD41_RS17095 PF04055 Radical SAM superfamily CJD41_RS17100 PF02416 mttA/Hcf106 family CJD41_RS17105 PF00795 Carbon-nitrogen hydrolase CJD41_RS17110 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CJD41_RS17115 PF00313 'Cold-shock' DNA-binding domain CJD41_RS17120 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CJD41_RS17135 PF12431 Transcriptional regulator CJD41_RS17135 PF00072 Response regulator receiver domain CJD41_RS17140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS17140 PF00989 PAS fold CJD41_RS17140 PF17203 Single cache domain 3 CJD41_RS17140 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CJD41_RS17145 PF08218 Citrate lyase ligase C-terminal domain CJD41_RS17150 PF06857 Malonate decarboxylase delta subunit (MdcD) CJD41_RS17155 PF03328 HpcH/HpaI aldolase/citrate lyase family CJD41_RS17160 PF04223 Citrate lyase, alpha subunit (CitF) CJD41_RS17165 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CJD41_RS17175 PF00939 Sodium:sulfate symporter transmembrane region CJD41_RS17180 PF00445 Ribonuclease T2 family CJD41_RS17185 PF14760 Rnk N-terminus CJD41_RS17185 PF01272 Transcription elongation factor, GreA/GreB, C-term CJD41_RS17190 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS17190 PF00107 Zinc-binding dehydrogenase CJD41_RS17190 PF13823 Alcohol dehydrogenase GroES-associated CJD41_RS17200 PF00582 Universal stress protein family CJD41_RS17210 PF13247 4Fe-4S dicluster domain CJD41_RS17215 PF01568 Molydopterin dinucleotide binding domain CJD41_RS17215 PF00384 Molybdopterin oxidoreductase CJD41_RS17215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJD41_RS17225 PF13192 Thioredoxin domain CJD41_RS17225 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS17230 PF00578 AhpC/TSA family CJD41_RS17230 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJD41_RS17235 PF13098 Thioredoxin-like domain CJD41_RS17245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS17245 PF03466 LysR substrate binding domain CJD41_RS17255 PF02195 ParB-like nuclease domain CJD41_RS17260 PF00155 Aminotransferase class I and II CJD41_RS17265 PF00465 Iron-containing alcohol dehydrogenase CJD41_RS17270 PF04328 Selenoprotein, putative CJD41_RS17275 PF02554 Carbon starvation protein CstA CJD41_RS17275 PF13722 5TM C-terminal transporter carbon starvation CstA CJD41_RS17280 PF03061 Thioesterase superfamily CJD41_RS17290 PF00857 Isochorismatase family CJD41_RS17290 PF00550 Phosphopantetheine attachment site CJD41_RS17295 PF13193 AMP-binding enzyme C-terminal domain CJD41_RS17295 PF00501 AMP-binding enzyme CJD41_RS17300 PF00425 chorismate binding enzyme CJD41_RS17305 PF01497 Periplasmic binding protein CJD41_RS17315 PF01032 FecCD transport family CJD41_RS17320 PF01032 FecCD transport family CJD41_RS17325 PF00005 ABC transporter CJD41_RS17330 PF02706 Chain length determinant protein CJD41_RS17335 PF13193 AMP-binding enzyme C-terminal domain CJD41_RS17335 PF00668 Condensation domain CJD41_RS17335 PF00501 AMP-binding enzyme CJD41_RS17335 PF00975 Thioesterase domain CJD41_RS17335 PF00550 Phosphopantetheine attachment site CJD41_RS17340 PF03621 MbtH-like protein CJD41_RS17345 PF11806 Domain of unknown function (DUF3327) CJD41_RS17345 PF00756 Putative esterase CJD41_RS17350 PF07715 TonB-dependent Receptor Plug Domain CJD41_RS17350 PF00593 TonB dependent receptor CJD41_RS17355 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CJD41_RS17355 PF01648 4'-phosphopantetheinyl transferase superfamily CJD41_RS17360 PF04107 Glutamate-cysteine ligase family 2(GCS2) CJD41_RS17365 PF06643 Protein of unknown function (DUF1158) CJD41_RS17370 PF12833 Helix-turn-helix domain CJD41_RS17375 PF16295 Tetracyclin repressor-like, C-terminal domain CJD41_RS17375 PF00440 Bacterial regulatory proteins, tetR family CJD41_RS17380 PF04237 YjbR CJD41_RS17385 PF00881 Nitroreductase family CJD41_RS17390 PF00657 GDSL-like Lipase/Acylhydrolase CJD41_RS17390 PF03797 Autotransporter beta-domain CJD41_RS17400 PF00924 Mechanosensitive ion channel CJD41_RS17405 PF00324 Amino acid permease CJD41_RS17415 PF04224 Protein of unknown function, DUF417 CJD41_RS17420 PF07338 Protein of unknown function (DUF1471) CJD41_RS17425 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS17425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJD41_RS17430 PF12852 Cupin CJD41_RS17430 PF12833 Helix-turn-helix domain CJD41_RS17435 PF00873 AcrB/AcrD/AcrF family CJD41_RS17440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS17440 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS17440 PF00672 HAMP domain CJD41_RS17450 PF04138 GtrA-like protein CJD41_RS17455 PF00535 Glycosyl transferase family 2 CJD41_RS17480 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS17495 PF00196 Bacterial regulatory proteins, luxR family CJD41_RS17495 PF00072 Response regulator receiver domain CJD41_RS17500 PF00419 Fimbrial protein CJD41_RS17505 PF00419 Fimbrial protein CJD41_RS17510 PF00577 Outer membrane usher protein CJD41_RS17510 PF13954 PapC N-terminal domain CJD41_RS17510 PF13953 PapC C-terminal domain CJD41_RS17525 PF00419 Fimbrial protein CJD41_RS17535 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CJD41_RS17535 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CJD41_RS17545 PF04307 LexA-binding, inner membrane-associated putative hydrolase CJD41_RS17560 PF09190 DALR domain CJD41_RS17560 PF01406 tRNA synthetases class I (C) catalytic domain CJD41_RS17565 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJD41_RS17570 PF12850 Calcineurin-like phosphoesterase superfamily domain CJD41_RS17575 PF00731 AIR carboxylase CJD41_RS17580 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CJD41_RS17580 PF02222 ATP-grasp domain CJD41_RS17585 PF00696 Amino acid kinase family CJD41_RS17590 PF11392 Protein of unknown function (DUF2877) CJD41_RS17595 PF06545 Protein of unknown function (DUF1116) CJD41_RS17600 PF00549 CoA-ligase CJD41_RS17600 PF02629 CoA binding domain CJD41_RS17610 PF01546 Peptidase family M20/M25/M40 CJD41_RS17615 PF07883 Cupin domain CJD41_RS17615 PF05899 Protein of unknown function (DUF861) CJD41_RS17620 PF02595 Glycerate kinase family CJD41_RS17630 PF01979 Amidohydrolase family CJD41_RS17635 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CJD41_RS17645 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJD41_RS17645 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJD41_RS17650 PF01261 Xylose isomerase-like TIM barrel CJD41_RS17655 PF00205 Thiamine pyrophosphate enzyme, central domain CJD41_RS17655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJD41_RS17655 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJD41_RS17660 PF09339 IclR helix-turn-helix domain CJD41_RS17660 PF01614 Bacterial transcriptional regulator CJD41_RS17665 PF04115 Ureidoglycolate lyase CJD41_RS17670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS17670 PF03466 LysR substrate binding domain CJD41_RS17680 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS17685 PF00005 ABC transporter CJD41_RS17685 PF09383 NIL domain CJD41_RS17690 PF03180 NLPA lipoprotein CJD41_RS17705 PF00005 ABC transporter CJD41_RS17710 PF13472 GDSL-like Lipase/Acylhydrolase family CJD41_RS17715 PF00106 short chain dehydrogenase CJD41_RS17725 PF03649 Uncharacterised protein family (UPF0014) CJD41_RS17730 PF00005 ABC transporter CJD41_RS17735 PF01145 SPFH domain / Band 7 family CJD41_RS17735 PF16200 C-terminal region of band_7 CJD41_RS17740 PF01957 NfeD-like C-terminal, partner-binding CJD41_RS17745 PF13411 MerR HTH family regulatory protein CJD41_RS17750 PF00403 Heavy-metal-associated domain CJD41_RS17760 PF01963 TraB family CJD41_RS17765 PF04073 Aminoacyl-tRNA editing domain CJD41_RS17770 PF00149 Calcineurin-like phosphoesterase CJD41_RS17770 PF02872 5'-nucleotidase, C-terminal domain CJD41_RS17775 PF07690 Major Facilitator Superfamily CJD41_RS17780 PF02254 TrkA-N domain CJD41_RS17780 PF00999 Sodium/hydrogen exchanger family CJD41_RS17785 PF00294 pfkB family carbohydrate kinase CJD41_RS17795 PF00762 Ferrochelatase CJD41_RS17800 PF05191 Adenylate kinase, active site lid CJD41_RS17810 PF00183 Hsp90 protein CJD41_RS17810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS17815 PF13662 Toprim domain CJD41_RS17815 PF02132 RecR protein CJD41_RS17820 PF02575 YbaB/EbfC DNA-binding family CJD41_RS17825 PF12169 DNA polymerase III subunits gamma and tau domain III CJD41_RS17825 PF12170 DNA polymerase III tau subunit V interacting with alpha CJD41_RS17825 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CJD41_RS17830 PF00156 Phosphoribosyl transferase domain CJD41_RS17835 PF04304 Protein of unknown function (DUF454) CJD41_RS17840 PF07445 Primosomal replication protein priC CJD41_RS17845 PF10689 Protein of unknown function (DUF2496) CJD41_RS17850 PF04754 Putative transposase, YhgA-like CJD41_RS17855 PF12795 Mechanosensitive ion channel porin domain CJD41_RS17855 PF00924 Mechanosensitive ion channel CJD41_RS17855 PF12794 Mechanosensitive ion channel inner membrane domain 1 CJD41_RS17860 PF00440 Bacterial regulatory proteins, tetR family CJD41_RS17860 PF08361 MAATS-type transcriptional repressor, C-terminal region CJD41_RS17865 PF00529 HlyD membrane-fusion protein of T1SS CJD41_RS17865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJD41_RS17870 PF00873 AcrB/AcrD/AcrF family CJD41_RS17875 PF10757 Biofilm formation regulator YbaJ CJD41_RS17880 PF05321 Haemolysin expression modulating protein CJD41_RS17885 PF14602 Hexapeptide repeat of succinyl-transferase CJD41_RS17885 PF12464 Maltose acetyltransferase CJD41_RS17890 PF10777 Inner membrane protein YlaC CJD41_RS17895 PF00444 Ribosomal protein L36 CJD41_RS17900 PF01197 Ribosomal protein L31 CJD41_RS17905 PF00563 EAL domain CJD41_RS17905 PF12792 CSS motif domain associated with EAL CJD41_RS17915 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJD41_RS17920 PF09619 Type III secretion system lipoprotein chaperone (YscW) CJD41_RS17930 PF00909 Ammonium Transporter Family CJD41_RS17935 PF00543 Nitrogen regulatory protein P-II CJD41_RS17940 PF00005 ABC transporter CJD41_RS17940 PF00664 ABC transporter transmembrane region CJD41_RS17945 PF00005 ABC transporter CJD41_RS17945 PF00664 ABC transporter transmembrane region CJD41_RS17950 PF01037 Lrp/AsnC ligand binding domain CJD41_RS17950 PF13404 AsnC-type helix-turn-helix domain CJD41_RS17965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD41_RS17965 PF12793 Sugar transport-related sRNA regulator N-term CJD41_RS17970 PF06508 Queuosine biosynthesis protein QueC CJD41_RS17985 PF13145 PPIC-type PPIASE domain CJD41_RS17990 PF00216 Bacterial DNA-binding protein CJD41_RS17995 PF00004 ATPase family associated with various cellular activities (AAA) CJD41_RS17995 PF05362 Lon protease (S16) C-terminal proteolytic domain CJD41_RS17995 PF02190 ATP-dependent protease La (LON) substrate-binding domain CJD41_RS18000 PF10431 C-terminal, D2-small domain, of ClpB protein CJD41_RS18000 PF06689 ClpX C4-type zinc finger CJD41_RS18000 PF07724 AAA domain (Cdc48 subfamily) CJD41_RS18005 PF00574 Clp protease CJD41_RS18010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJD41_RS18010 PF05697 Bacterial trigger factor protein (TF) CJD41_RS18010 PF05698 Bacterial trigger factor protein (TF) C-terminus CJD41_RS18025 PF01722 BolA-like protein CJD41_RS18035 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CJD41_RS18035 PF03923 Uncharacterized lipoprotein CJD41_RS18040 PF07690 Major Facilitator Superfamily CJD41_RS18045 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CJD41_RS18045 PF06481 COX Aromatic Rich Motif CJD41_RS18050 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJD41_RS18055 PF00510 Cytochrome c oxidase subunit III CJD41_RS18060 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CJD41_RS18065 PF01040 UbiA prenyltransferase family CJD41_RS18080 PF07690 Major Facilitator Superfamily CJD41_RS18085 PF04461 Protein of unknown function (DUF520) CJD41_RS18090 PF02558 Ketopantoate reductase PanE/ApbA CJD41_RS18090 PF08546 Ketopantoate reductase PanE/ApbA C terminal CJD41_RS18095 PF01965 DJ-1/PfpI family CJD41_RS18105 PF00266 Aminotransferase class-V CJD41_RS18110 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS18110 PF07702 UTRA domain CJD41_RS18115 PF01547 Bacterial extracellular solute-binding protein CJD41_RS18120 PF00005 ABC transporter CJD41_RS18120 PF08402 TOBE domain CJD41_RS18125 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS18130 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS18135 PF02926 THUMP domain CJD41_RS18135 PF02568 Thiamine biosynthesis protein (ThiI) CJD41_RS18140 PF02609 Exonuclease VII small subunit CJD41_RS18145 PF00348 Polyprenyl synthetase CJD41_RS18150 PF02780 Transketolase, C-terminal domain CJD41_RS18150 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CJD41_RS18150 PF02779 Transketolase, pyrimidine binding domain CJD41_RS18155 PF00248 Aldo/keto reductase family CJD41_RS18160 PF04608 Phosphatidylglycerophosphatase A CJD41_RS18165 PF02769 AIR synthase related protein, C-terminal domain CJD41_RS18165 PF00586 AIR synthase related protein, N-terminal domain CJD41_RS18170 PF01029 NusB family CJD41_RS18175 PF00885 6,7-dimethyl-8-ribityllumazine synthase CJD41_RS18180 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CJD41_RS18180 PF01872 RibD C-terminal domain CJD41_RS18185 PF03477 ATP cone domain CJD41_RS18190 PF11622 Protein of unknown function (DUF3251) CJD41_RS18195 PF03502 Nucleoside-specific channel-forming protein, Tsx CJD41_RS18210 PF01844 HNH endonuclease CJD41_RS18225 PF02355 Protein export membrane protein CJD41_RS18225 PF07549 SecD/SecF GG Motif CJD41_RS18230 PF07549 SecD/SecF GG Motif CJD41_RS18230 PF13721 SecD export protein N-terminal TM region CJD41_RS18230 PF02355 Protein export membrane protein CJD41_RS18235 PF02699 Preprotein translocase subunit CJD41_RS18240 PF01702 Queuine tRNA-ribosyltransferase CJD41_RS18245 PF02547 Queuosine biosynthesis protein CJD41_RS18250 PF04336 Acyl carrier protein phosphodiesterase CJD41_RS18255 PF00578 AhpC/TSA family CJD41_RS18255 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJD41_RS18260 PF00128 Alpha amylase, catalytic domain CJD41_RS18260 PF02903 Alpha amylase, N-terminal ig-like domain CJD41_RS18265 PF00324 Amino acid permease CJD41_RS18270 PF05525 Branched-chain amino acid transport protein CJD41_RS18275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS18275 PF11808 Phosphate regulon sensor protein PhoR CJD41_RS18275 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS18275 PF00989 PAS fold CJD41_RS18280 PF00072 Response regulator receiver domain CJD41_RS18280 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS18285 PF00149 Calcineurin-like phosphoesterase CJD41_RS18285 PF12320 Type 5 capsule protein repressor C-terminal domain CJD41_RS18290 PF13476 AAA domain CJD41_RS18295 PF07690 Major Facilitator Superfamily CJD41_RS18300 PF00480 ROK family CJD41_RS18305 PF04381 Putative exonuclease, RdgC CJD41_RS18310 PF06865 Pyrimidine/purine nucleoside phosphorylase CJD41_RS18315 PF07302 AroM protein CJD41_RS18320 PF16362 YaiA protein CJD41_RS18325 PF01202 Shikimate kinase CJD41_RS18330 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CJD41_RS18335 PF14748 Pyrroline-5-carboxylate reductase dimerisation CJD41_RS18335 PF03807 NADP oxidoreductase coenzyme F420-dependent CJD41_RS18345 PF07769 psiF repeat CJD41_RS18350 PF10796 Sigma-S stabilisation anti-adaptor protein CJD41_RS18365 PF07478 D-ala D-ala ligase C-terminus CJD41_RS18365 PF01820 D-ala D-ala ligase N-terminus CJD41_RS18370 PF10953 Protein of unknown function (DUF2754) CJD41_RS18375 PF10954 Protein of unknown function (DUF2755) CJD41_RS18380 PF07759 Protein of unknown function (DUF1615) CJD41_RS18385 PF05992 SbmA/BacA-like family CJD41_RS18395 PF00144 Beta-lactamase CJD41_RS18400 PF15977 Winged helix-turn-helix DNA binding CJD41_RS18405 PF03797 Autotransporter beta-domain CJD41_RS18410 PF00490 Delta-aminolevulinic acid dehydratase CJD41_RS18415 PF00501 AMP-binding enzyme CJD41_RS18415 PF16177 Acetyl-coenzyme A synthetase N-terminus CJD41_RS18415 PF13193 AMP-binding enzyme C-terminal domain CJD41_RS18420 PF03972 MmgE/PrpD family CJD41_RS18425 PF00285 Citrate synthase, C-terminal domain CJD41_RS18435 PF00158 Sigma-54 interaction domain CJD41_RS18435 PF02954 Bacterial regulatory protein, Fis family CJD41_RS18435 PF06506 Propionate catabolism activator CJD41_RS18440 PF07338 Protein of unknown function (DUF1471) CJD41_RS18445 PF01810 LysE type translocator CJD41_RS18450 PF00593 TonB dependent receptor CJD41_RS18450 PF07715 TonB-dependent Receptor Plug Domain CJD41_RS18465 PF02322 Cytochrome bd terminal oxidase subunit II CJD41_RS18470 PF01654 Cytochrome bd terminal oxidase subunit I CJD41_RS18485 PF01555 DNA methylase CJD41_RS18485 PF18273 Type III R-M EcoP15I C-terminal domain CJD41_RS18490 PF07690 Major Facilitator Superfamily CJD41_RS18500 PF09278 MerR, DNA binding CJD41_RS18500 PF00376 MerR family regulatory protein CJD41_RS18505 PF00403 Heavy-metal-associated domain CJD41_RS18510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJD41_RS18510 PF00529 HlyD membrane-fusion protein of T1SS CJD41_RS18515 PF00873 AcrB/AcrD/AcrF family CJD41_RS18540 PF13505 Outer membrane protein beta-barrel domain CJD41_RS18555 PF00563 EAL domain CJD41_RS18555 PF12792 CSS motif domain associated with EAL CJD41_RS18580 PF16970 Type-1 fimbrial protein, A CJD41_RS18585 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CJD41_RS18585 PF02753 Pili assembly chaperone PapD, C-terminal domain CJD41_RS18600 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CJD41_RS18600 PF02753 Pili assembly chaperone PapD, C-terminal domain CJD41_RS18615 PF03466 LysR substrate binding domain CJD41_RS18615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS18620 PF00561 alpha/beta hydrolase fold CJD41_RS18625 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJD41_RS18635 PF00330 Aconitase family (aconitate hydratase) CJD41_RS18640 PF07690 Major Facilitator Superfamily CJD41_RS18645 PF08986 Domain of unknown function (DUF1889) CJD41_RS18650 PF08841 Diol dehydratase reactivase ATPase-like domain CJD41_RS18650 PF18427 DD-reactivating factor swiveling domain CJD41_RS18655 PF18427 DD-reactivating factor swiveling domain CJD41_RS18655 PF08841 Diol dehydratase reactivase ATPase-like domain CJD41_RS18665 PF13356 Arm DNA-binding domain CJD41_RS18665 PF00589 Phage integrase family CJD41_RS18675 PF04138 GtrA-like protein CJD41_RS18680 PF00535 Glycosyl transferase family 2 CJD41_RS18795 PF03245 Bacteriophage Rz lysis protein CJD41_RS18800 PF00959 Phage lysozyme CJD41_RS18815 PF03589 Antitermination protein CJD41_RS18860 PF05772 NinB protein CJD41_RS18870 PF03796 DnaB-like helicase C terminal domain CJD41_RS18870 PF00772 DnaB-like helicase N terminal domain CJD41_RS18890 PF00717 Peptidase S24-like CJD41_RS18890 PF01381 Helix-turn-helix CJD41_RS18945 PF04098 Rad52/22 family double-strand break repair protein CJD41_RS18995 PF00589 Phage integrase family CJD41_RS19005 PF00171 Aldehyde dehydrogenase family CJD41_RS19010 PF01472 PUA domain CJD41_RS19010 PF00696 Amino acid kinase family CJD41_RS19020 PF07417 Sigma factor-binding transcriptional regulator Crl CJD41_RS19025 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) CJD41_RS19030 PF00156 Phosphoribosyl transferase domain CJD41_RS19035 PF07687 Peptidase dimerisation domain CJD41_RS19035 PF01546 Peptidase family M20/M25/M40 CJD41_RS19040 PF00472 RF-1 domain CJD41_RS19050 PF11798 IMS family HHH motif CJD41_RS19050 PF00817 impB/mucB/samB family CJD41_RS19050 PF11799 impB/mucB/samB family C-terminal domain CJD41_RS19055 PF03734 L,D-transpeptidase catalytic domain CJD41_RS19060 PF13230 Glutamine amidotransferases class-II CJD41_RS19065 PF13580 SIS domain CJD41_RS19070 PF02770 Acyl-CoA dehydrogenase, middle domain CJD41_RS19070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJD41_RS19070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJD41_RS19070 PF09317 Domain of unknown function (DUF1974) CJD41_RS19075 PF00795 Carbon-nitrogen hydrolase CJD41_RS19085 PF13505 Outer membrane protein beta-barrel domain CJD41_RS19095 PF03466 LysR substrate binding domain CJD41_RS19095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS19115 PF13954 PapC N-terminal domain CJD41_RS19115 PF13953 PapC C-terminal domain CJD41_RS19115 PF00577 Outer membrane usher protein CJD41_RS19120 PF02753 Pili assembly chaperone PapD, C-terminal domain CJD41_RS19120 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CJD41_RS19185 PF07724 AAA domain (Cdc48 subfamily) CJD41_RS19185 PF10431 C-terminal, D2-small domain, of ClpB protein CJD41_RS19185 PF00004 ATPase family associated with various cellular activities (AAA) CJD41_RS19185 PF17871 AAA lid domain CJD41_RS19190 PF17871 AAA lid domain CJD41_RS19190 PF07724 AAA domain (Cdc48 subfamily) CJD41_RS19190 PF10431 C-terminal, D2-small domain, of ClpB protein CJD41_RS19190 PF00004 ATPase family associated with various cellular activities (AAA) CJD41_RS19240 PF01926 50S ribosome-binding GTPase CJD41_RS19250 PF08220 DeoR-like helix-turn-helix domain CJD41_RS19250 PF13280 WYL domain CJD41_RS19280 PF06006 Bacterial protein of unknown function (DUF905) CJD41_RS19285 PF06067 Domain of unknown function (DUF932) CJD41_RS19300 PF03230 Antirestriction protein CJD41_RS19305 PF04002 RadC-like JAB domain CJD41_RS19315 PF06174 Protein of unknown function (DUF987) CJD41_RS19325 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CJD41_RS19335 PF06755 CbtA_toxin of type IV toxin-antitoxin system CJD41_RS19360 PF00929 Exonuclease CJD41_RS19365 PF00075 RNase H CJD41_RS19370 PF08241 Methyltransferase domain CJD41_RS19375 PF00753 Metallo-beta-lactamase superfamily CJD41_RS19375 PF16123 Hydroxyacylglutathione hydrolase C-terminus CJD41_RS19380 PF01464 Transglycosylase SLT domain CJD41_RS19380 PF01476 LysM domain CJD41_RS19385 PF08241 Methyltransferase domain CJD41_RS19390 PF03372 Endonuclease/Exonuclease/phosphatase family CJD41_RS19395 PF07690 Major Facilitator Superfamily CJD41_RS19400 PF03466 LysR substrate binding domain CJD41_RS19400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS19405 PF00248 Aldo/keto reductase family CJD41_RS19435 PF17871 AAA lid domain CJD41_RS19435 PF10431 C-terminal, D2-small domain, of ClpB protein CJD41_RS19435 PF00004 ATPase family associated with various cellular activities (AAA) CJD41_RS19435 PF07724 AAA domain (Cdc48 subfamily) CJD41_RS19435 PF02861 Clp amino terminal domain, pathogenicity island component CJD41_RS19440 PF02578 Multi-copper polyphenol oxidoreductase laccase CJD41_RS19445 PF00849 RNA pseudouridylate synthase CJD41_RS19445 PF01479 S4 domain CJD41_RS19450 PF13525 Outer membrane lipoprotein CJD41_RS19455 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CJD41_RS19465 PF01817 Chorismate mutase type II CJD41_RS19465 PF00800 Prephenate dehydratase CJD41_RS19470 PF08450 SMP-30/Gluconolactonase/LRE-like region CJD41_RS19475 PF02153 Prephenate dehydrogenase CJD41_RS19475 PF01817 Chorismate mutase type II CJD41_RS19480 PF00793 DAHP synthetase I family CJD41_RS19485 PF13689 YfiR/HmsC-like CJD41_RS19490 PF17152 Periplasmic sensor domain CJD41_RS19490 PF00990 Diguanylate cyclase, GGDEF domain CJD41_RS19495 PF01245 Ribosomal protein L19 CJD41_RS19500 PF01746 tRNA (Guanine-1)-methyltransferase CJD41_RS19505 PF05239 PRC-barrel domain CJD41_RS19505 PF01782 RimM N-terminal domain CJD41_RS19510 PF00886 Ribosomal protein S16 CJD41_RS19515 PF02881 SRP54-type protein, helical bundle domain CJD41_RS19515 PF02978 Signal peptide binding domain CJD41_RS19515 PF00448 SRP54-type protein, GTPase domain CJD41_RS19525 PF01578 Cytochrome C assembly protein CJD41_RS19530 PF01595 Cyclin M transmembrane N-terminal domain CJD41_RS19530 PF03471 Transporter associated domain CJD41_RS19530 PF00571 CBS domain CJD41_RS19540 PF01025 GrpE CJD41_RS19550 PF01513 ATP-NAD kinase CJD41_RS19555 PF02463 RecF/RecN/SMC N terminal domain CJD41_RS19560 PF04355 SmpA / OmlA family CJD41_RS19565 PF03658 RnfH family Ubiquitin CJD41_RS19570 PF03364 Polyketide cyclase / dehydrase and lipid transport CJD41_RS19575 PF01668 SmpB protein CJD41_RS19595 PF00529 HlyD membrane-fusion protein of T1SS CJD41_RS19595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJD41_RS19650 PF06722 Protein of unknown function (DUF1205) CJD41_RS19655 PF00664 ABC transporter transmembrane region CJD41_RS19655 PF00005 ABC transporter CJD41_RS19665 PF00756 Putative esterase CJD41_RS19670 PF00593 TonB dependent receptor CJD41_RS19670 PF07715 TonB-dependent Receptor Plug Domain CJD41_RS19685 PF00805 Pentapeptide repeats (8 copies) CJD41_RS19695 PF04393 Protein of unknown function (DUF535) CJD41_RS19710 PF03824 High-affinity nickel-transport protein CJD41_RS19715 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS19715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS19720 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS19720 PF00072 Response regulator receiver domain CJD41_RS19735 PF01970 Tripartite tricarboxylate transporter TctA family CJD41_RS19740 PF08943 CsiD CJD41_RS19750 PF00171 Aldehyde dehydrogenase family CJD41_RS19760 PF00324 Amino acid permease CJD41_RS19765 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS19765 PF07729 FCD domain CJD41_RS19770 PF01476 LysM domain CJD41_RS19770 PF04972 BON domain CJD41_RS19780 PF01679 Proteolipid membrane potential modulator CJD41_RS19785 PF01022 Bacterial regulatory protein, arsR family CJD41_RS19790 PF11127 Protein of unknown function (DUF2892) CJD41_RS19790 PF00581 Rhodanese-like domain CJD41_RS19810 PF06610 L-alanine exporter CJD41_RS19815 PF09400 Protein of unknown function (DUF2002) CJD41_RS19830 PF02627 Carboxymuconolactone decarboxylase family CJD41_RS19840 PF00462 Glutaredoxin CJD41_RS19845 PF07972 NrdI Flavodoxin like CJD41_RS19850 PF02867 Ribonucleotide reductase, barrel domain CJD41_RS19850 PF08343 Ribonucleotide reductase N-terminal CJD41_RS19850 PF00317 Ribonucleotide reductase, all-alpha domain CJD41_RS19855 PF00268 Ribonucleotide reductase, small chain CJD41_RS19865 PF00005 ABC transporter CJD41_RS19865 PF00571 CBS domain CJD41_RS19875 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CJD41_RS19880 PF07690 Major Facilitator Superfamily CJD41_RS19885 PF01047 MarR family CJD41_RS19890 PF00529 HlyD membrane-fusion protein of T1SS CJD41_RS19890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJD41_RS19905 PF02664 S-Ribosylhomocysteinase (LuxS) CJD41_RS19910 PF04262 Glutamate-cysteine ligase CJD41_RS19915 PF09335 SNARE associated Golgi protein CJD41_RS19920 PF13419 Haloacid dehalogenase-like hydrolase CJD41_RS19945 PF02599 Global regulator protein family CJD41_RS19950 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJD41_RS19950 PF01411 tRNA synthetases class II (A) CJD41_RS19950 PF02272 DHHA1 domain CJD41_RS19960 PF02631 RecX family CJD41_RS19965 PF00154 recA bacterial DNA recombination protein CJD41_RS19970 PF02464 Competence-damaged protein CJD41_RS19980 PF13406 Transglycosylase SLT domain CJD41_RS19985 PF03608 PTS system enzyme II sorbitol-specific factor CJD41_RS19990 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CJD41_RS19990 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CJD41_RS19995 PF03829 PTS system glucitol/sorbitol-specific IIA component CJD41_RS20000 PF00106 short chain dehydrogenase CJD41_RS20005 PF06923 Glucitol operon activator protein (GutM) CJD41_RS20010 PF08220 DeoR-like helix-turn-helix domain CJD41_RS20010 PF00455 DeoR C terminal sensor domain CJD41_RS20015 PF01380 SIS domain CJD41_RS20015 PF00571 CBS domain CJD41_RS20020 PF00158 Sigma-54 interaction domain CJD41_RS20020 PF01590 GAF domain CJD41_RS20025 PF00258 Flavodoxin CJD41_RS20025 PF00301 Rubredoxin CJD41_RS20025 PF00753 Metallo-beta-lactamase superfamily CJD41_RS20030 PF18113 Rubredoxin binding C-terminal domain CJD41_RS20030 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS20035 PF17788 HypF Kae1-like domain CJD41_RS20035 PF00708 Acylphosphatase CJD41_RS20035 PF07503 HypF finger CJD41_RS20035 PF01300 Telomere recombination CJD41_RS20040 PF13247 4Fe-4S dicluster domain CJD41_RS20040 PF12800 4Fe-4S binding domain CJD41_RS20050 PF01750 Hydrogenase maturation protease CJD41_RS20055 PF07450 Formate hydrogenlyase maturation protein HycH CJD41_RS20060 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJD41_RS20065 PF12838 4Fe-4S dicluster domain CJD41_RS20070 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CJD41_RS20070 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CJD41_RS20070 PF00374 Nickel-dependent hydrogenase CJD41_RS20075 PF00146 NADH dehydrogenase CJD41_RS20080 PF00361 Proton-conducting membrane transporter CJD41_RS20085 PF13247 4Fe-4S dicluster domain CJD41_RS20090 PF11046 Transcriptional repressor of hyc and hyp operons CJD41_RS20100 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CJD41_RS20105 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJD41_RS20110 PF01455 HupF/HypC family CJD41_RS20115 PF01924 Hydrogenase formation hypA family CJD41_RS20120 PF00586 AIR synthase related protein, N-terminal domain CJD41_RS20120 PF02769 AIR synthase related protein, C-terminal domain CJD41_RS20125 PF01590 GAF domain CJD41_RS20125 PF02954 Bacterial regulatory protein, Fis family CJD41_RS20125 PF00158 Sigma-54 interaction domain CJD41_RS20130 PF11756 Nitrous oxide-stimulated promoter CJD41_RS20135 PF01297 Zinc-uptake complex component A periplasmic CJD41_RS20140 PF00005 ABC transporter CJD41_RS20145 PF00950 ABC 3 transport family CJD41_RS20150 PF00950 ABC 3 transport family CJD41_RS20155 PF03421 YopJ Serine/Threonine acetyltransferase CJD41_RS20165 PF12833 Helix-turn-helix domain CJD41_RS20180 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) CJD41_RS20185 PF01514 Secretory protein of YscJ/FliF family CJD41_RS20195 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CJD41_RS20200 PF09480 Type III secretion system protein PrgH-EprH (PrgH) CJD41_RS20205 PF12833 Helix-turn-helix domain CJD41_RS20210 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS20215 PF01464 Transglycosylase SLT domain CJD41_RS20225 PF05932 Tir chaperone protein (CesT) family CJD41_RS20235 PF00550 Phosphopantetheine attachment site CJD41_RS20240 PF09052 SipA N-terminal domain CJD41_RS20245 PF06511 Type III secretion systems tip complex components CJD41_RS20250 PF09599 Salmonella-Shigella invasin protein C (IpaC_SipC) CJD41_RS20255 PF16535 Type III cell invasion protein SipB CJD41_RS20255 PF04888 Secretion system effector C (SseC) like family CJD41_RS20260 PF07720 Tetratricopeptide repeat CJD41_RS20265 PF01312 FlhB HrpN YscU SpaS Family CJD41_RS20270 PF01311 Bacterial export proteins, family 1 CJD41_RS20275 PF01313 Bacterial export proteins, family 3 CJD41_RS20280 PF00813 FliP family CJD41_RS20285 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJD41_RS20290 PF02510 Surface presentation of antigens protein CJD41_RS20295 PF02090 Salmonella surface presentation of antigen gene type M protein CJD41_RS20300 PF18269 T3SS EscN ATPase C-terminal domain CJD41_RS20300 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJD41_RS20300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJD41_RS20305 PF03519 Invasion protein B family CJD41_RS20310 PF00771 FHIPEP family CJD41_RS20315 PF07201 HrpJ-like domain CJD41_RS20320 PF03958 Bacterial type II/III secretion system short domain CJD41_RS20320 PF00263 Bacterial type II and III secretion system protein CJD41_RS20325 PF12833 Helix-turn-helix domain CJD41_RS20330 PF04741 InvH outer membrane lipoprotein CJD41_RS20355 PF00149 Calcineurin-like phosphoesterase CJD41_RS20380 PF01624 MutS domain I CJD41_RS20380 PF05188 MutS domain II CJD41_RS20380 PF05192 MutS domain III CJD41_RS20380 PF05190 MutS family domain IV CJD41_RS20380 PF00488 MutS domain V CJD41_RS20390 PF07690 Major Facilitator Superfamily CJD41_RS20395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS20395 PF03466 LysR substrate binding domain CJD41_RS20400 PF02447 GntP family permease CJD41_RS20405 PF01370 NAD dependent epimerase/dehydratase family CJD41_RS20410 PF01261 Xylose isomerase-like TIM barrel CJD41_RS20415 PF00596 Class II Aldolase and Adducin N-terminal domain CJD41_RS20420 PF17042 Nucleotide-binding C-terminal domain CJD41_RS20420 PF07005 Sugar-binding N-terminal domain CJD41_RS20425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJD41_RS20425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJD41_RS20430 PF00455 DeoR C terminal sensor domain CJD41_RS20430 PF08220 DeoR-like helix-turn-helix domain CJD41_RS20435 PF01047 MarR family CJD41_RS20440 PF02441 Flavoprotein CJD41_RS20445 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CJD41_RS20455 PF04542 Sigma-70 region 2 CJD41_RS20455 PF04545 Sigma-70, region 4 CJD41_RS20455 PF00140 Sigma-70 factor, region 1.2 CJD41_RS20455 PF04539 Sigma-70 region 3 CJD41_RS20460 PF01551 Peptidase family M23 CJD41_RS20460 PF01476 LysM domain CJD41_RS20470 PF01975 Survival protein SurE CJD41_RS20475 PF01142 tRNA pseudouridine synthase D (TruD) CJD41_RS20480 PF02542 YgbB family CJD41_RS20485 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CJD41_RS20490 PF04977 Septum formation initiator CJD41_RS20495 PF12084 Protein of unknown function (DUF3561) CJD41_RS20505 PF00009 Elongation factor Tu GTP binding domain CJD41_RS20510 PF01507 Phosphoadenosine phosphosulfate reductase family CJD41_RS20515 PF04389 Peptidase family M28 CJD41_RS20520 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) CJD41_RS20525 PF01867 CRISPR associated protein Cas1 CJD41_RS20535 PF09704 CRISPR-associated protein (Cas_Cas5) CJD41_RS20540 PF09344 CT1975-like protein CJD41_RS20550 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) CJD41_RS20555 PF00270 DEAD/DEAH box helicase CJD41_RS20555 PF18019 HD domain CJD41_RS20555 PF00271 Helicase conserved C-terminal domain CJD41_RS20570 PF01507 Phosphoadenosine phosphosulfate reductase family CJD41_RS20580 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJD41_RS20580 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJD41_RS20585 PF00175 Oxidoreductase NAD-binding domain CJD41_RS20585 PF00258 Flavodoxin CJD41_RS20585 PF00667 FAD binding domain CJD41_RS20595 PF01242 6-pyruvoyl tetrahydropterin synthase CJD41_RS20600 PF12706 Beta-lactamase superfamily domain CJD41_RS20600 PF03099 Biotin/lipoate A/B protein ligase family CJD41_RS20605 PF04055 Radical SAM superfamily CJD41_RS20610 PF03952 Enolase, N-terminal domain CJD41_RS20610 PF00113 Enolase, C-terminal TIM barrel domain CJD41_RS20615 PF00117 Glutamine amidotransferase class-I CJD41_RS20615 PF06418 CTP synthase N-terminus CJD41_RS20620 PF03819 MazG nucleotide pyrophosphohydrolase domain CJD41_RS20625 PF00419 Fimbrial protein CJD41_RS20635 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CJD41_RS20635 PF02753 Pili assembly chaperone PapD, C-terminal domain CJD41_RS20640 PF00419 Fimbrial protein CJD41_RS20650 PF00419 Fimbrial protein CJD41_RS20660 PF02824 TGS domain CJD41_RS20660 PF04607 Region found in RelA / SpoT proteins CJD41_RS20660 PF13291 ACT domain CJD41_RS20665 PF05958 tRNA (Uracil-5-)-methyltransferase CJD41_RS20665 PF01938 TRAM domain CJD41_RS20670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CJD41_RS20670 PF00672 HAMP domain CJD41_RS20670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS20670 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS20670 PF01627 Hpt domain CJD41_RS20670 PF00072 Response regulator receiver domain CJD41_RS20675 PF02595 Glycerate kinase family CJD41_RS20680 PF13378 Enolase C-terminal domain-like CJD41_RS20690 PF07690 Major Facilitator Superfamily CJD41_RS20700 PF00258 Flavodoxin CJD41_RS20705 PF00849 RNA pseudouridylate synthase CJD41_RS20710 PF04287 tRNA pseudouridine synthase C CJD41_RS20720 PF07348 Syd protein (SUKH-2) CJD41_RS20725 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CJD41_RS20725 PF14489 QueF-like protein CJD41_RS20730 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CJD41_RS20730 PF03641 Possible lysine decarboxylase CJD41_RS20730 PF11892 Domain of unknown function (DUF3412) CJD41_RS20740 PF03315 Serine dehydratase beta chain CJD41_RS20740 PF03313 Serine dehydratase alpha chain CJD41_RS20750 PF01367 5'-3' exonuclease, C-terminal SAM fold CJD41_RS20750 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CJD41_RS20755 PF00465 Iron-containing alcohol dehydrogenase CJD41_RS20760 PF00596 Class II Aldolase and Adducin N-terminal domain CJD41_RS20765 PF07690 Major Facilitator Superfamily CJD41_RS20770 PF07882 L-fucose isomerase, second N-terminal domain CJD41_RS20770 PF07881 L-fucose isomerase, first N-terminal domain CJD41_RS20770 PF02952 L-fucose isomerase, C-terminal domain CJD41_RS20775 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJD41_RS20775 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJD41_RS20780 PF05025 RbsD / FucU transport protein family CJD41_RS20785 PF00455 DeoR C terminal sensor domain CJD41_RS20785 PF08220 DeoR-like helix-turn-helix domain CJD41_RS20790 PF01728 FtsJ-like methyltransferase CJD41_RS20790 PF18125 RlmM ferredoxin-like domain CJD41_RS20795 PF04241 Protein of unknown function (DUF423) CJD41_RS20800 PF03466 LysR substrate binding domain CJD41_RS20800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS20805 PF06004 Bacterial protein of unknown function (DUF903) CJD41_RS20810 PF00266 Aminotransferase class-V CJD41_RS20815 PF02657 Fe-S metabolism associated domain CJD41_RS20820 PF00892 EamA-like transporter family CJD41_RS20825 PF00899 ThiF family CJD41_RS20830 PF06725 3D domain CJD41_RS20830 PF03562 MltA specific insert domain CJD41_RS20845 PF11741 AMIN domain CJD41_RS20845 PF01520 N-acetylmuramoyl-L-alanine amidase CJD41_RS20850 PF00696 Amino acid kinase family CJD41_RS20850 PF00583 Acetyltransferase (GNAT) family CJD41_RS20855 PF13538 UvrD-like helicase C-terminal domain CJD41_RS20860 PF12705 PD-(D/E)XK nuclease superfamily CJD41_RS20860 PF00580 UvrD/REP helicase N-terminal domain CJD41_RS20860 PF13361 UvrD-like helicase C-terminal domain CJD41_RS20865 PF00675 Insulinase (Peptidase family M16) CJD41_RS20865 PF05193 Peptidase M16 inactive domain CJD41_RS20865 PF16187 Middle or third domain of peptidase_M16 CJD41_RS20870 PF17946 RecC C-terminal domain CJD41_RS20875 PF12528 Type II secretion prepilin peptidase dependent protein C CJD41_RS20875 PF07963 Prokaryotic N-terminal methylation motif CJD41_RS20880 PF10713 Protein of unknown function (DUF2509) CJD41_RS20885 PF07963 Prokaryotic N-terminal methylation motif CJD41_RS20890 PF07963 Prokaryotic N-terminal methylation motif CJD41_RS20900 PF00303 Thymidylate synthase CJD41_RS20905 PF01790 Prolipoprotein diacylglyceryl transferase CJD41_RS20915 PF00293 NUDIX domain CJD41_RS20920 PF02976 DNA mismatch repair enzyme MutH CJD41_RS20925 PF03741 Integral membrane protein TerC family CJD41_RS20930 PF06004 Bacterial protein of unknown function (DUF903) CJD41_RS20935 PF00248 Aldo/keto reductase family CJD41_RS20940 PF07690 Major Facilitator Superfamily CJD41_RS20945 PF01553 Acyltransferase CJD41_RS20945 PF00501 AMP-binding enzyme CJD41_RS20960 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS20965 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS20970 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJD41_RS20970 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJD41_RS20975 PF03466 LysR substrate binding domain CJD41_RS20975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS20980 PF01177 Asp/Glu/Hydantoin racemase CJD41_RS20985 PF00083 Sugar (and other) transporter CJD41_RS21005 PF00108 Thiolase, N-terminal domain CJD41_RS21005 PF02803 Thiolase, C-terminal domain CJD41_RS21010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS21010 PF03466 LysR substrate binding domain CJD41_RS21020 PF03222 Tryptophan/tyrosine permease family CJD41_RS21025 PF02583 Metal-sensitive transcriptional repressor CJD41_RS21030 PF03824 High-affinity nickel-transport protein CJD41_RS21050 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CJD41_RS21050 PF02753 Pili assembly chaperone PapD, C-terminal domain CJD41_RS21055 PF00577 Outer membrane usher protein CJD41_RS21055 PF13954 PapC N-terminal domain CJD41_RS21055 PF13953 PapC C-terminal domain CJD41_RS21060 PF00419 Fimbrial protein CJD41_RS21070 PF13505 Outer membrane protein beta-barrel domain CJD41_RS21080 PF01850 PIN domain CJD41_RS21105 PF01476 LysM domain CJD41_RS21105 PF01551 Peptidase family M23 CJD41_RS21115 PF00293 NUDIX domain CJD41_RS21120 PF00152 tRNA synthetases class II (D, K and N) CJD41_RS21120 PF01336 OB-fold nucleic acid binding domain CJD41_RS21130 PF01368 DHH family CJD41_RS21130 PF02272 DHHA1 domain CJD41_RS21130 PF17768 RecJ OB domain CJD41_RS21135 PF13098 Thioredoxin-like domain CJD41_RS21135 PF10411 Disulfide bond isomerase protein N-terminus CJD41_RS21140 PF00589 Phage integrase family CJD41_RS21140 PF02899 Phage integrase, N-terminal SAM-like domain CJD41_RS21145 PF00258 Flavodoxin CJD41_RS21150 PF07254 Membrane-bound toxin component of toxin-antitoxin system CJD41_RS21155 PF03937 Flavinator of succinate dehydrogenase CJD41_RS21165 PF01571 Aminomethyltransferase folate-binding domain CJD41_RS21175 PF03006 Haemolysin-III related CJD41_RS21180 PF04266 ASCH domain CJD41_RS21185 PF00232 Glycosyl hydrolase family 1 CJD41_RS21200 PF02347 Glycine cleavage system P-protein CJD41_RS21205 PF01597 Glycine cleavage H-protein CJD41_RS21210 PF01571 Aminomethyltransferase folate-binding domain CJD41_RS21210 PF08669 Glycine cleavage T-protein C-terminal barrel domain CJD41_RS21215 PF01494 FAD binding domain CJD41_RS21220 PF01494 FAD binding domain CJD41_RS21225 PF00557 Metallopeptidase family M24 CJD41_RS21225 PF05195 Aminopeptidase P, N-terminal domain CJD41_RS21230 PF03695 Uncharacterised protein family (UPF0149) CJD41_RS21235 PF05164 Cell division protein ZapA CJD41_RS21245 PF01812 5-formyltetrahydrofolate cyclo-ligase family CJD41_RS21250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJD41_RS21250 PF01842 ACT domain CJD41_RS21250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJD41_RS21255 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CJD41_RS21260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS21260 PF03466 LysR substrate binding domain CJD41_RS21270 PF04402 Protein of unknown function (DUF541) CJD41_RS21275 PF01810 LysE type translocator CJD41_RS21280 PF05552 Conserved TM helix CJD41_RS21280 PF00924 Mechanosensitive ion channel CJD41_RS21285 PF01116 Fructose-bisphosphate aldolase class-II CJD41_RS21290 PF00162 Phosphoglycerate kinase CJD41_RS21295 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJD41_RS21295 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CJD41_RS21320 PF00005 ABC transporter CJD41_RS21325 PF00005 ABC transporter CJD41_RS21330 PF00456 Transketolase, thiamine diphosphate binding domain CJD41_RS21330 PF02780 Transketolase, C-terminal domain CJD41_RS21330 PF02779 Transketolase, pyrimidine binding domain CJD41_RS21335 PF01435 Peptidase family M48 CJD41_RS21340 PF00491 Arginase family CJD41_RS21345 PF12697 Alpha/beta hydrolase family CJD41_RS21350 PF04074 YhcH/YjgK/YiaL CJD41_RS21355 PF02615 Malate/L-lactate dehydrogenase CJD41_RS21360 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS21360 PF00107 Zinc-binding dehydrogenase CJD41_RS21365 PF01232 Mannitol dehydrogenase Rossmann domain CJD41_RS21365 PF08125 Mannitol dehydrogenase C-terminal domain CJD41_RS21375 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS21375 PF07729 FCD domain CJD41_RS21385 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJD41_RS21385 PF17810 Arginine decarboxylase helical bundle domain CJD41_RS21385 PF17944 Arginine decarboxylase C-terminal helical extension CJD41_RS21405 PF00438 S-adenosylmethionine synthetase, N-terminal domain CJD41_RS21405 PF02772 S-adenosylmethionine synthetase, central domain CJD41_RS21405 PF02773 S-adenosylmethionine synthetase, C-terminal domain CJD41_RS21410 PF00083 Sugar (and other) transporter CJD41_RS21415 PF17283 SprT-like zinc ribbon domain CJD41_RS21415 PF10263 SprT-like family CJD41_RS21420 PF04231 Endonuclease I CJD41_RS21425 PF04452 RNA methyltransferase CJD41_RS21430 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CJD41_RS21430 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CJD41_RS21435 PF02622 Uncharacterized ACR, COG1678 CJD41_RS21440 PF03652 Holliday junction resolvase CJD41_RS21450 PF00437 Type II/IV secretion system protein CJD41_RS21455 PF01168 Alanine racemase, N-terminal domain CJD41_RS21460 PF02325 YGGT family CJD41_RS21465 PF02594 Uncharacterised ACR, YggU family COG1872 CJD41_RS21470 PF01725 Ham1 family CJD41_RS21475 PF04055 Radical SAM superfamily CJD41_RS21475 PF06969 HemN C-terminal domain CJD41_RS21480 PF06717 Protein of unknown function (DUF1202) CJD41_RS21485 PF17763 Glutaminase/Asparaginase C-terminal domain CJD41_RS21485 PF00710 Asparaginase, N-terminal CJD41_RS21490 PF11101 Protein of unknown function (DUF2884) CJD41_RS21495 PF04320 Protein with unknown function (DUF469) CJD41_RS21500 PF02390 Putative methyltransferase CJD41_RS21505 PF00730 HhH-GPD superfamily base excision DNA repair protein CJD41_RS21505 PF14815 NUDIX domain CJD41_RS21505 PF00633 Helix-hairpin-helix motif CJD41_RS21510 PF04362 Bacterial Fe(2+) trafficking CJD41_RS21515 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CJD41_RS21515 PF01464 Transglycosylase SLT domain CJD41_RS21520 PF03825 Nucleoside H+ symporter CJD41_RS21530 PF04474 Protein of unknown function (DUF554) CJD41_RS21540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJD41_RS21545 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CJD41_RS21545 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CJD41_RS21550 PF01575 MaoC like domain CJD41_RS21555 PF03328 HpcH/HpaI aldolase/citrate lyase family CJD41_RS21560 PF03466 LysR substrate binding domain CJD41_RS21560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS21570 PF04055 Radical SAM superfamily CJD41_RS21585 PF13520 Amino acid permease CJD41_RS21595 PF01266 FAD dependent oxidoreductase CJD41_RS21600 PF00171 Aldehyde dehydrogenase family CJD41_RS21605 PF04965 Gene 25-like lysozyme CJD41_RS21615 PF01522 Polysaccharide deacetylase CJD41_RS21625 PF07690 Major Facilitator Superfamily CJD41_RS21630 PF03786 D-mannonate dehydratase (UxuA) CJD41_RS21635 PF01232 Mannitol dehydrogenase Rossmann domain CJD41_RS21635 PF08125 Mannitol dehydrogenase C-terminal domain CJD41_RS21640 PF02614 Glucuronate isomerase CJD41_RS21655 PF05257 CHAP domain CJD41_RS21655 PF03738 Glutathionylspermidine synthase preATP-grasp CJD41_RS21670 PF01497 Periplasmic binding protein CJD41_RS21675 PF01455 HupF/HypC family CJD41_RS21680 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CJD41_RS21685 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CJD41_RS21690 PF01750 Hydrogenase maturation protease CJD41_RS21695 PF00374 Nickel-dependent hydrogenase CJD41_RS21700 PF03916 Polysulphide reductase, NrfD CJD41_RS21705 PF13247 4Fe-4S dicluster domain CJD41_RS21710 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJD41_RS21710 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CJD41_RS21720 PF11115 Protein of unknown function (DUF2623) CJD41_RS21725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJD41_RS21725 PF02203 Tar ligand binding domain homologue CJD41_RS21725 PF00672 HAMP domain CJD41_RS21730 PF03350 Uncharacterized protein family, UPF0114 CJD41_RS21755 PF02472 Biopolymer transport protein ExbD/TolR CJD41_RS21760 PF01618 MotA/TolQ/ExbB proton channel family CJD41_RS21770 PF01053 Cys/Met metabolism PLP-dependent enzyme CJD41_RS21775 PF09335 SNARE associated Golgi protein CJD41_RS21780 PF12833 Helix-turn-helix domain CJD41_RS21780 PF06719 AraC-type transcriptional regulator N-terminus CJD41_RS21785 PF00465 Iron-containing alcohol dehydrogenase CJD41_RS21790 PF00248 Aldo/keto reductase family CJD41_RS21810 PF04055 Radical SAM superfamily CJD41_RS21810 PF08497 Radical SAM N-terminal CJD41_RS21810 PF11842 Domain of unknown function (DUF3362) CJD41_RS21815 PF03480 Bacterial extracellular solute-binding protein, family 7 CJD41_RS21825 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJD41_RS21830 PF07731 Multicopper oxidase CJD41_RS21830 PF00394 Multicopper oxidase CJD41_RS21830 PF07732 Multicopper oxidase CJD41_RS21835 PF01553 Acyltransferase CJD41_RS21840 PF00521 DNA gyrase/topoisomerase IV, subunit A CJD41_RS21840 PF03989 DNA gyrase C-terminal domain, beta-propeller CJD41_RS21845 PF06445 GyrI-like small molecule binding domain CJD41_RS21850 PF04076 Bacterial OB fold (BOF) protein CJD41_RS21855 PF00072 Response regulator receiver domain CJD41_RS21855 PF00486 Transcriptional regulatory protein, C terminal CJD41_RS21860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS21860 PF08521 Two-component sensor kinase N-terminal CJD41_RS21860 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS21865 PF02525 Flavodoxin-like fold CJD41_RS21870 PF03992 Antibiotic biosynthesis monooxygenase CJD41_RS21875 PF00204 DNA gyrase B CJD41_RS21875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS21875 PF01751 Toprim domain CJD41_RS21875 PF00986 DNA gyrase B subunit, carboxyl terminus CJD41_RS21880 PF05728 Uncharacterised protein family (UPF0227) CJD41_RS21885 PF00149 Calcineurin-like phosphoesterase CJD41_RS21890 PF06853 Protein of unknown function (DUF1249) CJD41_RS21895 PF00293 NUDIX domain CJD41_RS21900 PF02321 Outer membrane efflux protein CJD41_RS21910 PF06693 Protein of unknown function (DUF1190) CJD41_RS21915 PF03738 Glutathionylspermidine synthase preATP-grasp CJD41_RS21920 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CJD41_RS21925 PF02535 ZIP Zinc transporter CJD41_RS21935 PF05935 Arylsulfotransferase (ASST) CJD41_RS21935 PF17425 Arylsulfotransferase Ig-like domain CJD41_RS21940 PF01323 DSBA-like thioredoxin domain CJD41_RS21945 PF02600 Disulfide bond formation protein DsbB CJD41_RS21950 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CJD41_RS21955 PF04380 Membrane fusogenic activity CJD41_RS21960 PF08971 Glycogen synthesis protein CJD41_RS21965 PF07290 Protein of unknown function (DUF1449) CJD41_RS21970 PF01145 SPFH domain / Band 7 family CJD41_RS21970 PF15975 Flotillin CJD41_RS21980 PF00294 pfkB family carbohydrate kinase CJD41_RS21980 PF01467 Cytidylyltransferase-like CJD41_RS21985 PF08335 GlnD PII-uridylyltransferase CJD41_RS21985 PF03710 Glutamate-ammonia ligase adenylyltransferase CJD41_RS21990 PF01928 CYTH domain CJD41_RS22000 PF08239 Bacterial SH3 domain CJD41_RS22005 PF01743 Poly A polymerase head domain CJD41_RS22005 PF12627 Probable RNA and SrmB- binding site of polymerase A CJD41_RS22005 PF01966 HD domain CJD41_RS22010 PF02673 Bacitracin resistance protein BacA CJD41_RS22015 PF02152 Dihydroneopterin aldolase CJD41_RS22020 PF02660 Glycerol-3-phosphate acyltransferase CJD41_RS22025 PF05681 Fumarate hydratase (Fumerase) CJD41_RS22030 PF00814 Glycoprotease family CJD41_RS22035 PF01165 Ribosomal protein S21 CJD41_RS22040 PF01807 CHC2 zinc finger CJD41_RS22040 PF08275 DNA primase catalytic core, N-terminal domain CJD41_RS22040 PF08278 DNA primase DnaG DnaB-binding CJD41_RS22040 PF10410 DnaB-helicase binding domain of primase CJD41_RS22045 PF04539 Sigma-70 region 3 CJD41_RS22045 PF03979 Sigma-70 factor, region 1.1 CJD41_RS22045 PF04542 Sigma-70 region 2 CJD41_RS22045 PF04546 Sigma-70, non-essential region CJD41_RS22045 PF04545 Sigma-70, region 4 CJD41_RS22045 PF00140 Sigma-70 factor, region 1.2 CJD41_RS22050 PF03167 Uracil DNA glycosylase superfamily CJD41_RS22060 PF04954 Siderophore-interacting protein CJD41_RS22060 PF08021 Siderophore-interacting FAD-binding domain CJD41_RS22065 PF03551 Transcriptional regulator PadR-like family CJD41_RS22070 PF02203 Tar ligand binding domain homologue CJD41_RS22070 PF00672 HAMP domain CJD41_RS22070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJD41_RS22075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJD41_RS22075 PF08447 PAS fold CJD41_RS22080 PF00202 Aminotransferase class-III CJD41_RS22085 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS22085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJD41_RS22090 PF05175 Methyltransferase small domain CJD41_RS22095 PF01863 Protein of unknown function DUF45 CJD41_RS22100 PF02698 DUF218 domain CJD41_RS22110 PF03741 Integral membrane protein TerC family CJD41_RS22115 PF00375 Sodium:dicarboxylate symporter family CJD41_RS22125 PF09335 SNARE associated Golgi protein CJD41_RS22130 PF13721 SecD export protein N-terminal TM region CJD41_RS22135 PF06476 Protein of unknown function (DUF1090) CJD41_RS22140 PF05957 Bacterial protein of unknown function (DUF883) CJD41_RS22145 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CJD41_RS22150 PF13997 YqjK-like protein CJD41_RS22160 PF13409 Glutathione S-transferase, N-terminal domain CJD41_RS22165 PF05656 Protein of unknown function (DUF805) CJD41_RS22170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS22170 PF03466 LysR substrate binding domain CJD41_RS22175 PF02678 Pirin CJD41_RS22175 PF17954 Quercetinase C-terminal cupin domain CJD41_RS22185 PF03313 Serine dehydratase alpha chain CJD41_RS22200 PF02901 Pyruvate formate lyase-like CJD41_RS22200 PF01228 Glycine radical CJD41_RS22205 PF00871 Acetokinase family CJD41_RS22210 PF03222 Tryptophan/tyrosine permease family CJD41_RS22215 PF00291 Pyridoxal-phosphate dependent enzyme CJD41_RS22220 PF03466 LysR substrate binding domain CJD41_RS22220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS22240 PF02595 Glycerate kinase family CJD41_RS22245 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJD41_RS22245 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJD41_RS22250 PF03328 HpcH/HpaI aldolase/citrate lyase family CJD41_RS22255 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CJD41_RS22255 PF08666 SAF domain CJD41_RS22260 PF01116 Fructose-bisphosphate aldolase class-II CJD41_RS22265 PF08013 Tagatose 6 phosphate kinase CJD41_RS22270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJD41_RS22275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJD41_RS22280 PF03611 PTS system sugar-specific permease component CJD41_RS22285 PF00107 Zinc-binding dehydrogenase CJD41_RS22285 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS22290 PF08220 DeoR-like helix-turn-helix domain CJD41_RS22295 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJD41_RS22300 PF04348 LppC putative lipoprotein CJD41_RS22305 PF02021 Uncharacterised protein family UPF0102 CJD41_RS22310 PF13580 SIS domain CJD41_RS22315 PF04972 BON domain CJD41_RS22320 PF13460 NAD(P)H-binding CJD41_RS22325 PF01965 DJ-1/PfpI family CJD41_RS22335 PF01541 GIY-YIG catalytic domain CJD41_RS22340 PF13508 Acetyltransferase (GNAT) domain CJD41_RS22345 PF02036 SCP-2 sterol transfer family CJD41_RS22350 PF01136 Peptidase family U32 CJD41_RS22355 PF01136 Peptidase family U32 CJD41_RS22360 PF00296 Luciferase-like monooxygenase CJD41_RS22365 PF03734 L,D-transpeptidase catalytic domain CJD41_RS22375 PF03222 Tryptophan/tyrosine permease family CJD41_RS22380 PF03880 DbpA RNA binding domain CJD41_RS22380 PF00270 DEAD/DEAH box helicase CJD41_RS22380 PF12343 Cold shock protein DEAD box A CJD41_RS22380 PF00271 Helicase conserved C-terminal domain CJD41_RS22385 PF07719 Tetratricopeptide repeat CJD41_RS22385 PF13181 Tetratricopeptide repeat CJD41_RS22390 PF01138 3' exoribonuclease family, domain 1 CJD41_RS22390 PF03725 3' exoribonuclease family, domain 2 CJD41_RS22390 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CJD41_RS22390 PF00013 KH domain CJD41_RS22390 PF00575 S1 RNA binding domain CJD41_RS22395 PF00312 Ribosomal protein S15 CJD41_RS22400 PF09157 Pseudouridine synthase II TruB, C-terminal CJD41_RS22400 PF01509 TruB family pseudouridylate synthase (N terminal domain) CJD41_RS22400 PF16198 tRNA pseudouridylate synthase B C-terminal domain CJD41_RS22405 PF02033 Ribosome-binding factor A CJD41_RS22410 PF00009 Elongation factor Tu GTP binding domain CJD41_RS22410 PF11987 Translation-initiation factor 2 CJD41_RS22410 PF08364 Bacterial translation initiation factor IF-2 associated region CJD41_RS22410 PF04760 Translation initiation factor IF-2, N-terminal region CJD41_RS22415 PF08529 NusA N-terminal domain CJD41_RS22415 PF13184 NusA-like KH domain CJD41_RS22420 PF17384 RimP C-terminal SH3 domain CJD41_RS22420 PF02576 RimP N-terminal domain CJD41_RS22430 PF00764 Arginosuccinate synthase CJD41_RS22445 PF03840 Preprotein translocase SecG subunit CJD41_RS22450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJD41_RS22450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJD41_RS22450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJD41_RS22450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJD41_RS22455 PF00809 Pterin binding enzyme CJD41_RS22460 PF17862 AAA+ lid domain CJD41_RS22460 PF06480 FtsH Extracellular CJD41_RS22460 PF01434 Peptidase family M41 CJD41_RS22460 PF00004 ATPase family associated with various cellular activities (AAA) CJD41_RS22470 PF01728 FtsJ-like methyltransferase CJD41_RS22475 PF01985 CRS1 / YhbY (CRM) domain CJD41_RS22480 PF01272 Transcription elongation factor, GreA/GreB, C-term CJD41_RS22480 PF03449 Transcription elongation factor, N-terminal CJD41_RS22485 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CJD41_RS22490 PF01926 50S ribosome-binding GTPase CJD41_RS22490 PF01018 GTP1/OBG CJD41_RS22495 PF00892 EamA-like transporter family CJD41_RS22500 PF01016 Ribosomal L27 protein CJD41_RS22505 PF00829 Ribosomal prokaryotic L21 protein CJD41_RS22510 PF00348 Polyprenyl synthetase CJD41_RS22515 PF13693 Winged helix-turn-helix DNA-binding CJD41_RS22520 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJD41_RS22525 PF01722 BolA-like protein CJD41_RS22530 PF13466 STAS domain CJD41_RS22535 PF05494 MlaC protein CJD41_RS22540 PF02470 MlaD protein CJD41_RS22545 PF02405 Permease MlaE CJD41_RS22550 PF00005 ABC transporter CJD41_RS22555 PF01699 Sodium/calcium exchanger protein CJD41_RS22560 PF01380 SIS domain CJD41_RS22560 PF00571 CBS domain CJD41_RS22570 PF06835 Lipopolysaccharide-assembly, LptC-related CJD41_RS22575 PF03968 OstA-like protein CJD41_RS22580 PF00005 ABC transporter CJD41_RS22580 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJD41_RS22585 PF04552 Sigma-54, DNA binding domain CJD41_RS22585 PF04963 Sigma-54 factor, core binding domain CJD41_RS22585 PF00309 Sigma-54 factor, Activator interacting domain (AID) CJD41_RS22590 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CJD41_RS22595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJD41_RS22600 PF03668 P-loop ATPase protein family CJD41_RS22605 PF00381 PTS HPr component phosphorylation site CJD41_RS22615 PF10707 PhoP regulatory network protein YrbL CJD41_RS22620 PF00912 Transglycosylase CJD41_RS22630 PF01627 Hpt domain CJD41_RS22630 PF00989 PAS fold CJD41_RS22630 PF00072 Response regulator receiver domain CJD41_RS22630 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS22630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS22630 PF18415 Histidine kinase receptor ArcB trans-membrane domain CJD41_RS22635 PF04055 Radical SAM superfamily CJD41_RS22635 PF16199 Radical_SAM C-terminal domain CJD41_RS22640 PF00310 Glutamine amidotransferases class-II CJD41_RS22640 PF04898 Glutamate synthase central domain CJD41_RS22640 PF01493 GXGXG motif CJD41_RS22640 PF01645 Conserved region in glutamate synthase CJD41_RS22645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJD41_RS22645 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJD41_RS22655 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CJD41_RS22660 PF07969 Amidohydrolase family CJD41_RS22665 PF04074 YhcH/YjgK/YiaL CJD41_RS22670 PF00480 ROK family CJD41_RS22675 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CJD41_RS22680 PF07690 Major Facilitator Superfamily CJD41_RS22685 PF00701 Dihydrodipicolinate synthetase family CJD41_RS22690 PF07729 FCD domain CJD41_RS22690 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS22695 PF04386 Stringent starvation protein B CJD41_RS22700 PF00043 Glutathione S-transferase, C-terminal domain CJD41_RS22700 PF02798 Glutathione S-transferase, N-terminal domain CJD41_RS22715 PF00380 Ribosomal protein S9/S16 CJD41_RS22720 PF00572 Ribosomal protein L13 CJD41_RS22725 PF03969 AFG1-like ATPase CJD41_RS22730 PF06295 Protein of unknown function (DUF1043) CJD41_RS22735 PF13180 PDZ domain CJD41_RS22735 PF00595 PDZ domain CJD41_RS22740 PF13180 PDZ domain CJD41_RS22745 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CJD41_RS22750 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CJD41_RS22755 PF02436 Conserved carboxylase domain CJD41_RS22755 PF00682 HMGL-like CJD41_RS22755 PF00364 Biotin-requiring enzyme CJD41_RS22760 PF04277 Oxaloacetate decarboxylase, gamma chain CJD41_RS22765 PF05683 Fumarase C-terminus CJD41_RS22770 PF05681 Fumarate hydratase (Fumerase) CJD41_RS22775 PF00939 Sodium:sulfate symporter transmembrane region CJD41_RS22785 PF07702 UTRA domain CJD41_RS22785 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS22790 PF00056 lactate/malate dehydrogenase, NAD binding domain CJD41_RS22790 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJD41_RS22795 PF01316 Arginine repressor, DNA binding domain CJD41_RS22795 PF02863 Arginine repressor, C-terminal domain CJD41_RS22800 PF07338 Protein of unknown function (DUF1471) CJD41_RS22805 PF07338 Protein of unknown function (DUF1471) CJD41_RS22810 PF01337 Barstar (barnase inhibitor) CJD41_RS22815 PF04632 Fusaric acid resistance protein family CJD41_RS22820 PF13533 Biotin-lipoyl like CJD41_RS22825 PF07869 Protein of unknown function (DUF1656) CJD41_RS22830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS22830 PF03466 LysR substrate binding domain CJD41_RS22835 PF01523 Putative modulator of DNA gyrase CJD41_RS22840 PF13502 AsmA-like C-terminal region CJD41_RS22840 PF13116 Protein of unknown function CJD41_RS22845 PF00575 S1 RNA binding domain CJD41_RS22845 PF10150 Ribonuclease E/G family CJD41_RS22850 PF02545 Maf-like protein CJD41_RS22855 PF04093 rod shape-determining protein MreD CJD41_RS22860 PF04085 rod shape-determining protein MreC CJD41_RS22875 PF00563 EAL domain CJD41_RS22875 PF17157 Gammaproteobacterial periplasmic sensor domain CJD41_RS22875 PF00990 Diguanylate cyclase, GGDEF domain CJD41_RS22880 PF08240 Alcohol dehydrogenase GroES-like domain CJD41_RS22880 PF00107 Zinc-binding dehydrogenase CJD41_RS22885 PF00174 Oxidoreductase molybdopterin binding domain CJD41_RS22890 PF01794 Ferric reductase like transmembrane component CJD41_RS22895 PF00364 Biotin-requiring enzyme CJD41_RS22900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJD41_RS22900 PF02785 Biotin carboxylase C-terminal domain CJD41_RS22900 PF00289 Biotin carboxylase, N-terminal domain CJD41_RS22905 PF06196 Protein of unknown function (DUF997) CJD41_RS22910 PF00474 Sodium:solute symporter family CJD41_RS22920 PF01207 Dihydrouridine synthase (Dus) CJD41_RS22925 PF02954 Bacterial regulatory protein, Fis family CJD41_RS22930 PF01555 DNA methylase CJD41_RS22935 PF10831 Protein of unknown function (DUF2556) CJD41_RS22940 PF00563 EAL domain CJD41_RS22940 PF00990 Diguanylate cyclase, GGDEF domain CJD41_RS22940 PF03707 Bacterial signalling protein N terminal repeat CJD41_RS22945 PF00440 Bacterial regulatory proteins, tetR family CJD41_RS22945 PF08361 MAATS-type transcriptional repressor, C-terminal region CJD41_RS22950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJD41_RS22950 PF00529 HlyD membrane-fusion protein of T1SS CJD41_RS22955 PF00873 AcrB/AcrD/AcrF family CJD41_RS22995 PF01808 AICARFT/IMPCHase bienzyme CJD41_RS22995 PF02142 MGS-like domain CJD41_RS23000 PF02843 Phosphoribosylglycinamide synthetase, C domain CJD41_RS23000 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CJD41_RS23000 PF02844 Phosphoribosylglycinamide synthetase, N domain CJD41_RS23005 PF00158 Sigma-54 interaction domain CJD41_RS23005 PF00072 Response regulator receiver domain CJD41_RS23005 PF02954 Bacterial regulatory protein, Fis family CJD41_RS23010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJD41_RS23010 PF00512 His Kinase A (phospho-acceptor) domain CJD41_RS23015 PF13801 Heavy-metal resistance CJD41_RS23020 PF07356 Protein of unknown function (DUF1481) CJD41_RS23025 PF00216 Bacterial DNA-binding protein CJD41_RS23030 PF04222 Protein of unknown function (DUF416) CJD41_RS23035 PF04493 Endonuclease V CJD41_RS23040 PF01208 Uroporphyrinogen decarboxylase (URO-D) CJD41_RS23045 PF00293 NUDIX domain CJD41_RS23045 PF09297 NADH pyrophosphatase zinc ribbon domain CJD41_RS23050 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CJD41_RS23055 PF13667 ThiC-associated domain CJD41_RS23055 PF01964 Radical SAM ThiC family CJD41_RS23060 PF02581 Thiamine monophosphate synthase CJD41_RS23065 PF00899 ThiF family CJD41_RS23070 PF02597 ThiS family CJD41_RS23075 PF05690 Thiazole biosynthesis protein ThiG CJD41_RS23080 PF04055 Radical SAM superfamily CJD41_RS23080 PF06968 Biotin and Thiamin Synthesis associated domain CJD41_RS23115 PF04983 RNA polymerase Rpb1, domain 3 CJD41_RS23115 PF05000 RNA polymerase Rpb1, domain 4 CJD41_RS23115 PF00623 RNA polymerase Rpb1, domain 2 CJD41_RS23115 PF04998 RNA polymerase Rpb1, domain 5 CJD41_RS23115 PF04997 RNA polymerase Rpb1, domain 1 CJD41_RS23120 PF04561 RNA polymerase Rpb2, domain 2 CJD41_RS23120 PF04563 RNA polymerase beta subunit CJD41_RS23120 PF04565 RNA polymerase Rpb2, domain 3 CJD41_RS23120 PF10385 RNA polymerase beta subunit external 1 domain CJD41_RS23120 PF00562 RNA polymerase Rpb2, domain 6 CJD41_RS23120 PF04560 RNA polymerase Rpb2, domain 7 CJD41_RS23125 PF16320 Ribosomal protein L7/L12 dimerisation domain CJD41_RS23125 PF00542 Ribosomal protein L7/L12 C-terminal domain CJD41_RS23130 PF00466 Ribosomal protein L10 CJD41_RS23140 PF00687 Ribosomal protein L1p/L10e family CJD41_RS23145 PF03946 Ribosomal protein L11, N-terminal domain CJD41_RS23145 PF00298 Ribosomal protein L11, RNA binding domain CJD41_RS23150 PF02357 Transcription termination factor nusG CJD41_RS23150 PF00467 KOW motif CJD41_RS23155 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CJD41_RS23160 PF03144 Elongation factor Tu domain 2 CJD41_RS23160 PF03143 Elongation factor Tu C-terminal domain CJD41_RS23160 PF00009 Elongation factor Tu GTP binding domain CJD41_RS23190 PF00485 Phosphoribulokinase / Uridine kinase family CJD41_RS23195 PF03099 Biotin/lipoate A/B protein ligase family CJD41_RS23195 PF08279 HTH domain CJD41_RS23195 PF02237 Biotin protein ligase C terminal domain CJD41_RS23200 PF01565 FAD binding domain CJD41_RS23200 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CJD41_RS23230 PF12724 Flavodoxin domain CJD41_RS23235 PF02386 Cation transport protein CJD41_RS23240 PF09186 Domain of unknown function (DUF1949) CJD41_RS23240 PF01205 Uncharacterized protein family UPF0029 CJD41_RS23245 PF00557 Metallopeptidase family M24 CJD41_RS23250 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJD41_RS23250 PF00378 Enoyl-CoA hydratase/isomerase CJD41_RS23250 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJD41_RS23255 PF02803 Thiolase, C-terminal domain CJD41_RS23255 PF00108 Thiolase, N-terminal domain CJD41_RS23265 PF00175 Oxidoreductase NAD-binding domain CJD41_RS23265 PF00970 Oxidoreductase FAD-binding domain CJD41_RS23270 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CJD41_RS23275 PF02357 Transcription termination factor nusG CJD41_RS23280 PF01026 TatD related DNase CJD41_RS23285 PF00902 Sec-independent protein translocase protein (TatC) CJD41_RS23295 PF02416 mttA/Hcf106 family CJD41_RS23305 PF02036 SCP-2 sterol transfer family CJD41_RS23310 PF01209 ubiE/COQ5 methyltransferase family CJD41_RS23315 PF02646 RmuC family CJD41_RS23320 PF01048 Phosphorylase superfamily CJD41_RS23325 PF01738 Dienelactone hydrolase family CJD41_RS23330 PF13186 Iron-sulfur cluster-binding domain CJD41_RS23330 PF04055 Radical SAM superfamily CJD41_RS23335 PF01717 Cobalamin-independent synthase, Catalytic domain CJD41_RS23335 PF08267 Cobalamin-independent synthase, N-terminal domain CJD41_RS23340 PF03466 LysR substrate binding domain CJD41_RS23340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS23345 PF00892 EamA-like transporter family CJD41_RS23355 PF12146 Serine aminopeptidase, S33 CJD41_RS23360 PF01810 LysE type translocator CJD41_RS23365 PF01810 LysE type translocator CJD41_RS23370 PF00270 DEAD/DEAH box helicase CJD41_RS23370 PF00271 Helicase conserved C-terminal domain CJD41_RS23370 PF00570 HRDC domain CJD41_RS23370 PF16124 RecQ zinc-binding CJD41_RS23370 PF09382 RQC domain CJD41_RS23375 PF02253 Phospholipase A1 CJD41_RS23380 PF03061 Thioesterase superfamily CJD41_RS23385 PF00892 EamA-like transporter family CJD41_RS23400 PF01544 CorA-like Mg2+ transporter protein CJD41_RS23410 PF13361 UvrD-like helicase C-terminal domain CJD41_RS23410 PF00580 UvrD/REP helicase N-terminal domain CJD41_RS23415 PF13419 Haloacid dehalogenase-like hydrolase CJD41_RS23420 PF02899 Phage integrase, N-terminal SAM-like domain CJD41_RS23420 PF00589 Phage integrase family CJD41_RS23425 PF04340 Protein of unknown function, DUF484 CJD41_RS23430 PF01678 Diaminopimelate epimerase CJD41_RS23435 PF13627 Prokaryotic lipoprotein-attachment site CJD41_RS23455 PF01491 Frataxin-like domain CJD41_RS23460 PF01295 Adenylate cyclase, class-I CJD41_RS23460 PF12633 Adenylate cyclase NT domain CJD41_RS23465 PF03900 Porphobilinogen deaminase, C-terminal domain CJD41_RS23465 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CJD41_RS23470 PF02602 Uroporphyrinogen-III synthase HemD CJD41_RS23475 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CJD41_RS23480 PF07219 HemY protein N-terminus CJD41_RS23480 PF07719 Tetratricopeptide repeat CJD41_RS23505 PF00324 Amino acid permease CJD41_RS23510 PF03808 Glycosyl transferase WecB/TagA/CpsF family CJD41_RS23515 PF06899 WzyE protein, O-antigen assembly polymerase CJD41_RS23520 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CJD41_RS23525 PF01943 Polysaccharide biosynthesis protein CJD41_RS23530 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJD41_RS23540 PF00483 Nucleotidyl transferase CJD41_RS23540 PF00483 Nucleotidyl transferase CJD41_RS23545 PF16363 GDP-mannose 4,6 dehydratase CJD41_RS23550 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CJD41_RS23550 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CJD41_RS23550 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CJD41_RS23555 PF02350 UDP-N-acetylglucosamine 2-epimerase CJD41_RS23560 PF02706 Chain length determinant protein CJD41_RS23565 PF00953 Glycosyl transferase family 4 CJD41_RS23570 PF07498 Rho termination factor, N-terminal domain CJD41_RS23570 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJD41_RS23570 PF07497 Rho termination factor, RNA-binding domain CJD41_RS23580 PF00085 Thioredoxin CJD41_RS23585 PF00270 DEAD/DEAH box helicase CJD41_RS23585 PF00271 Helicase conserved C-terminal domain CJD41_RS23590 PF02541 Ppx/GppA phosphatase family CJD41_RS23595 PF13361 UvrD-like helicase C-terminal domain CJD41_RS23595 PF00580 UvrD/REP helicase N-terminal domain CJD41_RS23600 PF04973 Nicotinamide mononucleotide transporter CJD41_RS23615 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CJD41_RS23615 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CJD41_RS23620 PF03466 LysR substrate binding domain CJD41_RS23620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS23635 PF00291 Pyridoxal-phosphate dependent enzyme CJD41_RS23635 PF00585 C-terminal regulatory domain of Threonine dehydratase CJD41_RS23640 PF00920 Dehydratase family CJD41_RS23645 PF01063 Amino-transferase class IV CJD41_RS23655 PF00205 Thiamine pyrophosphate enzyme, central domain CJD41_RS23655 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJD41_RS23655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJD41_RS23660 PF08046 IlvGEDA operon leader peptide CJD41_RS23665 PF13335 Magnesium chelatase, subunit ChlI C-terminal CJD41_RS23665 PF01078 Magnesium chelatase, subunit ChlI CJD41_RS23670 PF04219 Protein of unknown function, DUF CJD41_RS23675 PF03466 LysR substrate binding domain CJD41_RS23675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS23715 PF07729 FCD domain CJD41_RS23715 PF00392 Bacterial regulatory proteins, gntR family CJD41_RS23720 PF07690 Major Facilitator Superfamily CJD41_RS23730 PF00356 Bacterial regulatory proteins, lacI family CJD41_RS23735 PF00294 pfkB family carbohydrate kinase CJD41_RS23740 PF13407 Periplasmic binding protein domain CJD41_RS23745 PF02653 Branched-chain amino acid transport system / permease component CJD41_RS23750 PF00005 ABC transporter CJD41_RS23755 PF05025 RbsD / FucU transport protein family CJD41_RS23760 PF02705 K+ potassium transporter CJD41_RS23765 PF07728 AAA domain (dynein-related subfamily) CJD41_RS23765 PF17868 AAA lid domain CJD41_RS23765 PF12592 Protein of unknown function (DUF3763) CJD41_RS23770 PF05762 VWA domain containing CoxE-like protein CJD41_RS23775 PF03590 Aspartate-ammonia ligase CJD41_RS23780 PF01037 Lrp/AsnC ligand binding domain CJD41_RS23785 PF00258 Flavodoxin CJD41_RS23795 PF13932 GidA associated domain CJD41_RS23795 PF01134 Glucose inhibited division protein A CJD41_RS23800 PF02527 rRNA small subunit methyltransferase G CJD41_RS23810 PF00119 ATP synthase A chain CJD41_RS23815 PF00137 ATP synthase subunit C CJD41_RS23820 PF00430 ATP synthase B/B' CF(0) CJD41_RS23825 PF00213 ATP synthase delta (OSCP) subunit CJD41_RS23830 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJD41_RS23830 PF00306 ATP synthase alpha/beta chain, C terminal domain CJD41_RS23830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJD41_RS23835 PF00231 ATP synthase CJD41_RS23840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJD41_RS23840 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJD41_RS23845 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CJD41_RS23845 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CJD41_RS23860 PF00132 Bacterial transferase hexapeptide (six repeats) CJD41_RS23860 PF12804 MobA-like NTP transferase domain CJD41_RS23865 PF01380 SIS domain CJD41_RS23870 PF12793 Sugar transport-related sRNA regulator N-term CJD41_RS23870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJD41_RS23875 PF08501 Shikimate dehydrogenase substrate binding domain CJD41_RS23880 PF02378 Phosphotransferase system, EIIC CJD41_RS23880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJD41_RS23885 PF12849 PBP superfamily domain CJD41_RS23890 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS23895 PF00528 Binding-protein-dependent transport system inner membrane component CJD41_RS23900 PF00005 ABC transporter CJD41_RS23905 PF01895 PhoU domain CJD41_RS23910 PF13419 Haloacid dehalogenase-like hydrolase CJD41_RS23920 PF03358 NADPH-dependent FMN reductase CJD41_RS23930 PF03466 LysR substrate binding domain CJD41_RS23930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJD41_RS23935 PF07690 Major Facilitator Superfamily CJD41_RS23940 PF01926 50S ribosome-binding GTPase CJD41_RS23940 PF12631 MnmE helical domain CJD41_RS23940 PF10396 GTP-binding protein TrmE N-terminus CJD41_RS23945 PF14849 YidC periplasmic domain CJD41_RS23945 PF02096 60Kd inner membrane protein CJD41_RS23950 PF01809 Putative membrane protein insertion efficiency factor CJD41_RS23955 PF00825 Ribonuclease P CJD41_RS23960 PF00468 Ribosomal protein L34 CJD41_RS23975 PF12759 InsA C-terminal domain CJD41_RS23975 PF03811 InsA N-terminal domain CJD41_RS23985 PF02374 Anion-transporting ATPase CJD41_RS24000 PF03358 NADPH-dependent FMN reductase CJD41_RS24020 PF01526 Tn3 transposase DDE domain CJD41_RS24020 PF13700 Domain of unknown function (DUF4158) CJD41_RS24025 PF02796 Helix-turn-helix domain of resolvase CJD41_RS24025 PF00239 Resolvase, N terminal domain CJD41_RS24030 PF13614 AAA domain CJD41_RS24045 PF00665 Integrase core domain CJD41_RS24045 PF02796 Helix-turn-helix domain of resolvase CJD41_RS24060 PF01758 Sodium Bile acid symporter family CJD41_RS24070 PF03358 NADPH-dependent FMN reductase CJD41_RS24080 PF00239 Resolvase, N terminal domain CJD41_RS24080 PF02796 Helix-turn-helix domain of resolvase CJD41_RS24100 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJD41_RS24100 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJD41_RS24100 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJD41_RS24100 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJD41_RS24105 PF00809 Pterin binding enzyme CJD41_RS24135 PF01051 Initiator Replication protein CJD41_RS24140 PF01051 Initiator Replication protein CJD41_RS24150 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CJD41_RS24205 PF02357 Transcription termination factor nusG CJD41_RS24255 PF03743 Bacterial conjugation TrbI-like protein CJD41_RS24260 PF00437 Type II/IV secretion system protein CJD41_RS24290 PF00565 Staphylococcal nuclease homologue CJD41_RS24305 PF01131 DNA topoisomerase CJD41_RS24305 PF01751 Toprim domain CJD41_RS24310 PF05321 Haemolysin expression modulating protein CJD41_RS24315 PF00816 H-NS histone family CJD41_RS24355 PF00239 Resolvase, N terminal domain CJD41_RS24355 PF02796 Helix-turn-helix domain of resolvase CJD41_RS24365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJD41_RS24365 PF08447 PAS fold CJD41_RS24370 PF00239 Resolvase, N terminal domain CJD41_RS24370 PF02796 Helix-turn-helix domain of resolvase CJD41_RS24430 PF03538 Salmonella virulence plasmid 28.1kDa A protein CJD41_RS24435 PF03496 ADP-ribosyltransferase exoenzyme CJD41_RS24435 PF03534 Salmonella virulence plasmid 65kDa B protein CJD41_RS24440 PF03536 Salmonella virulence-associated 28kDa protein CJD41_RS24445 PF05563 Salmonella plasmid virulence protein SpvD CJD41_RS24455 PF12323 Helix-turn-helix domain CJD41_RS24460 PF09134 Invasin, domain 3 CJD41_RS24460 PF11924 Inverse autotransporter, beta-domain CJD41_RS24460 PF02369 Bacterial Ig-like domain (group 1) CJD41_RS24485 PF00589 Phage integrase family CJD41_RS24500 PF01845 CcdB protein CJD41_RS24505 PF07362 Post-segregation antitoxin CcdA CJD41_RS24510 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CJD41_RS24515 PF01850 PIN domain CJD41_RS24530 PF06977 SdiA-regulated CJD41_RS24565 PF02432 Fimbrial, major and minor subunit CJD41_RS24605 PF02387 IncFII RepA protein family CJD41_RS24620 PF10723 Replication regulatory protein RepB CJD41_RS24640 PF04352 ProQ/FINO family CJD41_RS24640 PF12602 Fertility inhibition protein N terminal CJD41_RS24645 PF05857 TraX protein CJD41_RS24650 PF18272 single-stranded DNA binding TraI N-terminal subdomain CJD41_RS24650 PF07057 DNA helicase TraI CJD41_RS24650 PF18340 DNA relaxase TraI 2B/2B-like domain CJD41_RS24650 PF08751 TrwC relaxase CJD41_RS24655 PF12615 F sex factor protein N terminal CJD41_RS24655 PF10412 Type IV secretion-system coupling protein DNA-binding domain CJD41_RS24665 PF05818 Enterobacterial TraT complement resistance protein CJD41_RS24675 PF06122 Conjugative relaxosome accessory transposon protein CJD41_RS24680 PF13728 F plasmid transfer operon protein CJD41_RS24685 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) CJD41_RS24690 PF13728 F plasmid transfer operon protein CJD41_RS24705 PF06986 Type-1V conjugative transfer system mating pair stabilisation CJD41_RS24715 PF09673 Type-F conjugative transfer system pilin assembly protein CJD41_RS24725 PF06834 TraU protein CJD41_RS24730 PF12477 Sex factor F TraW protein N terminal CJD41_RS24735 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) CJD41_RS24755 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJD41_RS24760 PF09676 Type IV conjugative transfer system lipoprotein (TraV) CJD41_RS24770 PF07296 TraP protein CJD41_RS24775 PF03743 Bacterial conjugation TrbI-like protein CJD41_RS24780 PF06586 TraK protein CJD41_RS24785 PF05309 TraE protein CJD41_RS24790 PF07178 TraL protein CJD41_RS24795 PF05513 TraA CJD41_RS24800 PF05509 TraY domain CJD41_RS24810 PF05261 TraM protein, DNA-binding CJD41_RS24815 PF01464 Transglycosylase SLT domain CJD41_RS24840 PF06006 Bacterial protein of unknown function (DUF905) CJD41_RS24865 PF06440 DNA polymerase III, theta subunit CJD41_RS24875 PF03230 Antirestriction protein CJD41_RS24900 PF01555 DNA methylase CJD41_RS24920 PF00717 Peptidase S24-like CJD41_RS24925 PF13438 Domain of unknown function (DUF4113) CJD41_RS24925 PF00817 impB/mucB/samB family CJD41_RS24925 PF11799 impB/mucB/samB family C-terminal domain CJD41_RS24930 PF02195 ParB-like nuclease domain CJD41_RS24930 PF08775 ParB family CJD41_RS24935 PF13614 AAA domain CJD41_RS24935 PF18607 ParA helix turn helix domain CJD41_RS24940 PF04754 Putative transposase, YhgA-like