locus-tag	class	description
CJD41_RS00030	COG4948	Mandelate Racemase Muconate Lactonizing
CJD41_RS00040	COG0561	phosphatase activity
CJD41_RS00045	COG2186	Transcriptional regulator
CJD41_RS00050	COG3734	2-keto-3-deoxy-galactonokinase
CJD41_RS00055	COG0800	Aldolase
CJD41_RS00065	COG2271	Major facilitator Superfamily
CJD41_RS00085	COG1858	cytochrome C peroxidase
CJD41_RS00090	COG4133	protoheme IX ABC transporter activity
CJD41_RS00095	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJD41_RS00100	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJD41_RS00105	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJD41_RS00115	COG1138	Cytochrome C-type biogenesis protein
CJD41_RS00125	COG3088	subunit of a heme lyase
CJD41_RS00125	COG4235	cytochrome complex assembly
CJD41_RS00130	COG0823	Involved in the tonB-independent uptake of proteins
CJD41_RS00135	COG5645	(Lipo)protein
CJD41_RS00155	COG2149	membrane
CJD41_RS00165	COG0641	radical SAM
CJD41_RS00175	COG2610	gluconate transmembrane transporter activity
CJD41_RS00180	COG0583	DNA-binding transcription factor activity
CJD41_RS00190	COG2814	Major facilitator Superfamily
CJD41_RS00220	COG0028	Belongs to the TPP enzyme family
CJD41_RS00225	COG0440	acetolactate synthase activity
CJD41_RS00230	COG1349	DNA-binding transcription factor activity
CJD41_RS00240	COG0738	Major facilitator superfamily
CJD41_RS00290	COG2723	6-phospho-beta-galactosidase activity
CJD41_RS00310	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CJD41_RS00310	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS00315	COG3715	PTS system
CJD41_RS00320	COG3716	PTS system mannose fructose sorbose family IID component
CJD41_RS00335	COG5464	transposase or invertase
CJD41_RS00365	COG1335	isochorismatase
CJD41_RS00375	COG3710	Transcriptional regulator
CJD41_RS00390	COG2771	luxR family
CJD41_RS00440	COG1501	Belongs to the glycosyl hydrolase 31 family
CJD41_RS00445	COG2982	Protein involved in outer membrane biogenesis
CJD41_RS00450	COG2233	PERMEase
CJD41_RS00455	COG0786	glutamate:sodium symporter activity
CJD41_RS00460	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CJD41_RS00465	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CJD41_RS00470	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CJD41_RS00490	COG2860	membrane
CJD41_RS00505	COG0583	DNA-binding transcription factor activity
CJD41_RS00510	COG1561	YicC-like family, N-terminal region
CJD41_RS00535	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CJD41_RS00565	COG1519	Transferase
CJD41_RS00570	COG0859	PFAM glycosyl transferase family 9
CJD41_RS00575	COG0438	transferase activity, transferring glycosyl groups
CJD41_RS00655	COG1216	Glycosyl transferase, family 2
CJD41_RS00660	COG2861	carbohydrate metabolic process
CJD41_RS00665	COG4942	peptidase
CJD41_RS00675	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CJD41_RS00680	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CJD41_RS00715	COG1609	Transcriptional regulator
CJD41_RS00720	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CJD41_RS00730	COG2186	Transcriptional regulator
CJD41_RS00765	COG3722	fumarate hydratase activity
CJD41_RS00780	COG2213	PTS system mannitol-specific
CJD41_RS00780	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS00785	COG0625	glutathione transferase activity
CJD41_RS00795	COG3276	selenocysteine insertion sequence binding
CJD41_RS00800	COG1940	carbohydrate kinase activity
CJD41_RS00805	COG1012	belongs to the aldehyde dehydrogenase family
CJD41_RS00820	COG0235	Class ii aldolase
CJD41_RS00825	COG3623	hexulose-6-phosphate isomerase
CJD41_RS00830	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
CJD41_RS00835	COG1070	Carbohydrate kinase
CJD41_RS00840	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CJD41_RS00845	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
CJD41_RS00850	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CJD41_RS00860	COG2731	YhcH YjgK YiaL family protein
CJD41_RS00870	COG1414	Transcriptional regulator
CJD41_RS00875	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJD41_RS00880	COG3977	Valine--pyruvate aminotransferase
CJD41_RS00885	COG0366	Alpha amylase catalytic
CJD41_RS00890	COG2992	FlgJ-related protein
CJD41_RS00895	COG2207	Transcriptional regulator
CJD41_RS00895	COG1609	Transcriptional regulator
CJD41_RS00910	COG1070	Carbohydrate kinase
CJD41_RS00915	COG4682	membrane
CJD41_RS00920	COG3274	enterobacterial common antigen metabolic process
CJD41_RS00945	COG2801	Transposase and inactivated derivatives
CJD41_RS00950	COG2801	Transposase and inactivated derivatives
CJD41_RS00975	COG1278	Cold shock
CJD41_RS00980	COG2944	sequence-specific DNA binding
CJD41_RS00995	COG2885	chlorophyll binding
CJD41_RS01000	COG0243	molybdopterin cofactor binding
CJD41_RS01005	COG0456	acetyltransferase
CJD41_RS01010	COG2818	Glycosylase
CJD41_RS01015	COG5571	outer membrane autotransporter
CJD41_RS01065	COG1609	Transcriptional regulator
CJD41_RS01080	COG0747	negative chemotaxis
CJD41_RS01090	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CJD41_RS01095	COG0444	Belongs to the ABC transporter superfamily
CJD41_RS01100	COG4608	Belongs to the ABC transporter superfamily
CJD41_RS01105	COG0814	amino acid
CJD41_RS01155	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
CJD41_RS01170	COG2199	diguanylate cyclase activity
CJD41_RS01170	COG2200	EAL domain
CJD41_RS01185	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJD41_RS01195	COG2982	Protein involved in outer membrane biogenesis
CJD41_RS01200	COG0477	Major facilitator Superfamily
CJD41_RS01205	COG1295	ribonuclease BN
CJD41_RS01210	COG0583	DNA-binding transcription factor activity
CJD41_RS01215	COG2197	response regulator
CJD41_RS01235	COG2188	Transcriptional regulator
CJD41_RS01240	COG2222	sugar isomerase
CJD41_RS01245	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJD41_RS01250	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CJD41_RS01260	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CJD41_RS01265	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CJD41_RS01270	COG0671	phosphoesterase, PA-phosphatase related
CJD41_RS01300	COG0306	phosphate transporter
CJD41_RS01310	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJD41_RS01320	COG0842	Transport permease protein
CJD41_RS01330	COG2091	lysine biosynthetic process via aminoadipic acid
CJD41_RS01335	COG0628	permease
CJD41_RS01350	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CJD41_RS01370	COG3714	YhhN family
CJD41_RS01380	COG3776	membrane
CJD41_RS01385	COG0742	ribosomal rna small subunit methyltransferase
CJD41_RS01390	COG0552	protein localization to endoplasmic reticulum
CJD41_RS01395	COG2884	Cell division ATP-binding protein ftsE
CJD41_RS01400	COG2177	Part of the ABC transporter FtsEX involved in
CJD41_RS01480	COG0584	glycerophosphoryl diester phosphodiesterase
CJD41_RS01490	COG0405	Gamma-glutamyltransferase
CJD41_RS01495	COG1735	metal-dependent hydrolase with the TIM-barrel fold
CJD41_RS01510	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJD41_RS01515	COG1247	-acetyltransferase
CJD41_RS01525	COG0673	inositol 2-dehydrogenase activity
CJD41_RS01530	COG1741	Belongs to the pirin family
CJD41_RS01535	COG1609	Transcriptional regulator
CJD41_RS01540	COG3265	gluconokinase activity
CJD41_RS01545	COG2610	gluconate transmembrane transporter activity
CJD41_RS01580	COG0058	SHG alpha-glucan phosphorylase activity
CJD41_RS01585	COG1414	Transcriptional regulator
CJD41_RS01590	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJD41_RS01595	COG0129	dihydroxy-acid dehydratase activity
CJD41_RS01605	COG0371	Dehydrogenase
CJD41_RS01620	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CJD41_RS01635	COG1349	DNA-binding transcription factor activity
CJD41_RS01650	COG1690	Belongs to the RtcB family
CJD41_RS01660	COG3077	Addiction module antitoxin, RelB DinJ family
CJD41_RS01665	COG3041	Addiction module toxin RelE StbE family
CJD41_RS01675	COG0058	SHG alpha-glucan phosphorylase activity
CJD41_RS01680	COG1640	4-alpha-glucanotransferase
CJD41_RS01685	COG2610	gluconate transmembrane transporter activity
CJD41_RS01705	COG5464	transposase or invertase
CJD41_RS01720	COG1918	ferrous iron import across plasma membrane
CJD41_RS01730	COG2183	response to ionizing radiation
CJD41_RS01735	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CJD41_RS01755	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
CJD41_RS01765	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CJD41_RS01770	COG1011	Hydrolase
CJD41_RS01780	COG0494	nUDIX hydrolase
CJD41_RS01785	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CJD41_RS01790	COG4972	Pilus assembly protein
CJD41_RS01795	COG3166	PFAM Fimbrial assembly family protein
CJD41_RS01810	COG4796	Type ii and iii secretion system protein
CJD41_RS01830	COG3266	domain, Protein
CJD41_RS01840	COG0338	D12 class N6 adenine-specific DNA methyltransferase
CJD41_RS01845	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CJD41_RS01885	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CJD41_RS01920	COG1289	transmembrane transporter activity
CJD41_RS01930	COG1765	OsmC-like protein
CJD41_RS01935	COG3954	Phosphoribulokinase
CJD41_RS01945	COG0429	hydrolase of the alpha beta-hydrolase fold
CJD41_RS01960	COG0488	(ABC) transporter
CJD41_RS01975	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
CJD41_RS01980	COG1047	Peptidyl-prolyl cis-trans
CJD41_RS01995	COG0545	Peptidyl-prolyl cis-trans isomerase
CJD41_RS02000	COG2964	Protein conserved in bacteria
CJD41_RS02065	COG0051	transcription antitermination factor activity, RNA binding
CJD41_RS02090	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CJD41_RS02170	COG0201	protein transport
CJD41_RS02215	COG3036	rescue of stalled ribosome
CJD41_RS02255	COG0551	DNA topoisomerase type I activity
CJD41_RS02275	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CJD41_RS02300	COG1763	Mo-molybdopterin cofactor biosynthetic process
CJD41_RS02310	COG3084	Protein conserved in bacteria
CJD41_RS02325	COG0204	Acyl-transferase
CJD41_RS02395	COG0561	phosphatase activity
CJD41_RS02445	COG1501	Belongs to the glycosyl hydrolase 31 family
CJD41_RS02450	COG2017	converts alpha-aldose to the beta-anomer
CJD41_RS02470	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJD41_RS02475	COG1349	DNA-binding transcription factor activity
CJD41_RS02480	COG1011	Hydrolase
CJD41_RS02495	COG0456	acetyltransferase
CJD41_RS02500	COG5499	transcription regulator containing HTH domain
CJD41_RS02505	COG4680	protein conserved in bacteria
CJD41_RS02515	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
CJD41_RS02530	COG2864	formate dehydrogenase
CJD41_RS02535	COG0437	4 iron, 4 sulfur cluster binding
CJD41_RS02565	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CJD41_RS02580	COG1454	alcohol dehydrogenase
CJD41_RS02630	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CJD41_RS02640	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CJD41_RS02645	COG2258	MOSC domain
CJD41_RS02660	COG2205	protein histidine kinase activity
CJD41_RS02665	COG0745	RESPONSE REGULATOR receiver
CJD41_RS02670	COG3678	ATP-independent chaperone mediated protein folding
CJD41_RS02675	COG4974	Belongs to the 'phage' integrase family
CJD41_RS02720	COG4695	Portal protein
CJD41_RS02830	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CJD41_RS02900	COG2211	Major facilitator Superfamily
CJD41_RS02905	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJD41_RS02915	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJD41_RS02925	COG2134	cdp-diacylglycerol pyrophosphatase
CJD41_RS02935	COG1070	Carbohydrate kinase
CJD41_RS02960	COG1879	ABC-type sugar transport system periplasmic component
CJD41_RS02990	COG3152	Membrane
CJD41_RS03000	COG1494	fructose-1,6-bisphosphatase
CJD41_RS03010	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CJD41_RS03025	COG1575	Belongs to the MenA family. Type 1 subfamily
CJD41_RS03040	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CJD41_RS03045	COG1609	Transcriptional regulator
CJD41_RS03050	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CJD41_RS03075	COG0626	cystathionine gamma-synthase activity
CJD41_RS03080	COG0460	homoserine dehydrogenase
CJD41_RS03080	COG0527	aspartate kinase activity
CJD41_RS03085	COG0668	transmembrane transport
CJD41_RS03100	COG0737	Belongs to the 5'-nucleotidase family
CJD41_RS03105	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CJD41_RS03110	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CJD41_RS03135	COG3738	Protein conserved in bacteria
CJD41_RS03140	COG0371	Dehydrogenase
CJD41_RS03150	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CJD41_RS03150	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS03150	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS03155	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CJD41_RS03160	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CJD41_RS03165	COG1882	Formate acetyltransferase
CJD41_RS03170	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CJD41_RS03175	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CJD41_RS03180	COG2207	Transcriptional regulator
CJD41_RS03225	COG0583	DNA-binding transcription factor activity
CJD41_RS03305	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CJD41_RS03350	COG3122	Protein conserved in bacteria
CJD41_RS03365	COG1349	DNA-binding transcription factor activity
CJD41_RS03370	COG0561	phosphatase activity
CJD41_RS03400	COG0527	aspartate kinase activity
CJD41_RS03425	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CJD41_RS03480	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CJD41_RS03490	COG0534	Mate efflux family protein
CJD41_RS03505	COG0735	belongs to the Fur family
CJD41_RS03560	COG2315	Protein conserved in bacteria
CJD41_RS03630	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CJD41_RS03650	COG2252	PERMEase
CJD41_RS03660	COG0025	NhaP-type Na H and K H
CJD41_RS03665	COG0583	DNA-binding transcription factor activity
CJD41_RS03670	COG1380	Effector of murein hydrolase LrgA
CJD41_RS03675	COG1346	cytolysis
CJD41_RS03685	COG3162	membrane
CJD41_RS03695	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJD41_RS03705	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
CJD41_RS03710	COG0437	4 iron, 4 sulfur cluster binding
CJD41_RS03715	COG3301	Polysulphide reductase, NrfD
CJD41_RS03720	COG1138	Cytochrome C-type biogenesis protein
CJD41_RS03725	COG4235	cytochrome complex assembly
CJD41_RS03730	COG1301	dicarboxylic acid transport
CJD41_RS03735	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CJD41_RS03755	COG2764	glyoxalase bleomycin resistance protein dioxygenase
CJD41_RS03760	COG2824	Alkylphosphonate utilization operon protein PhnA
CJD41_RS03790	COG0531	amino acid
CJD41_RS03795	COG2207	Transcriptional regulator
CJD41_RS03800	COG1982	Orn Lys Arg decarboxylase major
CJD41_RS03805	COG2169	Transcriptional regulator
CJD41_RS03820	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CJD41_RS03820	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CJD41_RS03825	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CJD41_RS03835	COG4565	transcriptional regulatory protein
CJD41_RS03840	COG3290	protein histidine kinase activity
CJD41_RS03850	COG0437	4 iron, 4 sulfur cluster binding
CJD41_RS03855	COG3302	dmso reductase anchor subunit
CJD41_RS03860	COG3381	protein complex oligomerization
CJD41_RS03880	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
CJD41_RS03885	COG2197	response regulator
CJD41_RS03925	COG1309	transcriptional regulator
CJD41_RS03940	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CJD41_RS03945	COG1027	Aspartate ammonia-lyase
CJD41_RS03950	COG3030	protein affecting phage T7 exclusion by the F plasmid
CJD41_RS04000	COG5510	response to toxic substance
CJD41_RS04030	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CJD41_RS04035	COG1053	succinate dehydrogenase
CJD41_RS04075	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJD41_RS04100	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CJD41_RS04100	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CJD41_RS04105	COG0802	atpase or kinase
CJD41_RS04130	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CJD41_RS04135	COG0330	HflC and HflK could
CJD41_RS04140	COG0330	HflC and HflK could
CJD41_RS04145	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
CJD41_RS04160	COG0557	exoribonuclease II activity
CJD41_RS04170	COG3789	protein conserved in bacteria
CJD41_RS04175	COG1842	Phage shock protein A
CJD41_RS04190	COG3766	membrane
CJD41_RS04195	COG5463	Belongs to the UPF0441 family
CJD41_RS04200	COG0754	glutathionylspermidine amidase activity
CJD41_RS04205	COG1960	acyl-CoA dehydrogenase activity
CJD41_RS04215	COG3650	response to hydrogen peroxide
CJD41_RS04220	COG1073	alpha beta
CJD41_RS04240	COG3414	Phosphotransferase system galactitol-specific IIB component
CJD41_RS04290	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CJD41_RS04305	COG3061	Opacity-associated protein A
CJD41_RS04310	COG0545	Peptidyl-prolyl cis-trans isomerase
CJD41_RS04315	COG1113	amino acid transport
CJD41_RS04335	COG0697	spore germination
CJD41_RS04345	COG1733	regulation of RNA biosynthetic process
CJD41_RS04365	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
CJD41_RS04380	COG1253	flavin adenine dinucleotide binding
CJD41_RS04400	COG2105	PFAM AIG2 family protein
CJD41_RS04405	COG2271	Major facilitator Superfamily
CJD41_RS04410	COG3964	amidohydrolase
CJD41_RS04425	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CJD41_RS04435	COG0312	modulator of DNA gyrase
CJD41_RS04470	COG3964	amidohydrolase
CJD41_RS04485	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS04485	COG3711	transcriptional antiterminator
CJD41_RS04490	COG3077	Addiction module antitoxin, RelB DinJ family
CJD41_RS04495	COG2026	Addiction module toxin, RelE StbE family
CJD41_RS04515	COG1263	PTS System
CJD41_RS04515	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CJD41_RS04570	COG1438	arginine binding
CJD41_RS04575	COG1288	antiporter activity
CJD41_RS04595	COG2731	YhcH YjgK YiaL family protein
CJD41_RS04635	COG2927	DNA polymerase III (CHI subunit)
CJD41_RS04650	COG0795	lipopolysaccharide-transporting ATPase activity
CJD41_RS04655	COG0795	lipopolysaccharide-transporting ATPase activity
CJD41_RS04660	COG1609	Transcriptional regulator
CJD41_RS04665	COG1028	Short-chain dehydrogenase reductase Sdr
CJD41_RS04670	COG1063	alcohol dehydrogenase
CJD41_RS04675	COG3265	gluconokinase activity
CJD41_RS04680	COG1064	alcohol dehydrogenase
CJD41_RS04760	COG3204	pilus organization
CJD41_RS04785	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
CJD41_RS04820	COG0412	Dienelactone hydrolase
CJD41_RS04830	COG2186	Transcriptional regulator
CJD41_RS04855	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CJD41_RS04860	COG0700	Nucleoside recognition
CJD41_RS04865	COG3366	ferrous iron transmembrane transporter activity
CJD41_RS04875	COG0477	Major facilitator Superfamily
CJD41_RS04880	COG2733	membrane
CJD41_RS04890	COG5464	transposase or invertase
CJD41_RS04905	COG0732	type I restriction modification DNA specificity domain
CJD41_RS04910	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CJD41_RS04950	COG0523	cobalamin synthesis protein
CJD41_RS04955	COG2879	small protein
CJD41_RS04965	COG0840	transmembrane signaling receptor activity
CJD41_RS04980	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CJD41_RS04985	COG3715	PTS system
CJD41_RS04990	COG3716	PTS system mannose fructose sorbose family IID component
CJD41_RS04995	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CJD41_RS05015	COG1484	DNA-dependent DNA replication
CJD41_RS05030	COG2966	Psort location CytoplasmicMembrane, score
CJD41_RS05035	COG2197	response regulator
CJD41_RS05040	COG2197	response regulator
CJD41_RS05045	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CJD41_RS05050	COG4114	ferric iron reductase
CJD41_RS05055	COG3706	GGDEF domain
CJD41_RS05080	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
CJD41_RS05090	COG1011	Hydrolase
CJD41_RS05100	COG2823	Periplasmic or secreted lipoprotein
CJD41_RS05110	COG4667	esterase of the alpha-beta hydrolase superfamily
CJD41_RS05115	COG0084	hydrolase, TatD family'
CJD41_RS05120	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CJD41_RS05150	COG3550	peptidyl-serine autophosphorylation
CJD41_RS05160	COG3726	membrane protein affecting hemolysin expression
CJD41_RS05170	COG0560	Phosphoserine phosphatase
CJD41_RS05185	COG0488	(ABC) transporter
CJD41_RS05210	COG3708	Transcriptional regulator
CJD41_RS05210	COG2207	Transcriptional regulator
CJD41_RS05215	COG3045	CreA protein
CJD41_RS05220	COG0745	RESPONSE REGULATOR receiver
CJD41_RS05225	COG2205	protein histidine kinase activity
CJD41_RS05230	COG4452	Inner membrane protein CreD
CJD41_RS05270	COG0745	RESPONSE REGULATOR receiver
CJD41_RS05280	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
CJD41_RS05290	COG0460	homoserine dehydrogenase
CJD41_RS05290	COG0527	aspartate kinase activity
CJD41_RS05300	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CJD41_RS05310	COG1115	amino acid carrier protein
CJD41_RS05320	COG0521	Mo-molybdopterin cofactor biosynthetic process
CJD41_RS05325	COG1584	GPR1 FUN34 yaaH family protein
CJD41_RS05330	COG4735	regulation of single-species biofilm formation
CJD41_RS05395	COG3188	usher protein
CJD41_RS05410	COG3539	Fimbrial protein
CJD41_RS05415	COG3121	Chaperone
CJD41_RS05435	COG0583	DNA-binding transcription factor activity
CJD41_RS05450	COG0737	Belongs to the 5'-nucleotidase family
CJD41_RS05460	COG3119	arylsulfatase activity
CJD41_RS05465	COG0641	radical SAM
CJD41_RS05485	COG0583	DNA-binding transcription factor activity
CJD41_RS05510	COG0196	riboflavin kinase activity
CJD41_RS05525	COG1047	Peptidyl-prolyl cis-trans
CJD41_RS05670	COG0644	oxidoreductase
CJD41_RS05680	COG2271	Major facilitator Superfamily
CJD41_RS05750	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CJD41_RS05785	COG0417	DNA replication proofreading
CJD41_RS05825	COG0586	Pfam SNARE associated Golgi protein
CJD41_RS05920	COG0768	penicillin binding
CJD41_RS05930	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CJD41_RS05945	COG0772	Belongs to the SEDS family
CJD41_RS05970	COG0849	cell division
CJD41_RS05975	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CJD41_RS05995	COG0494	nUDIX hydrolase
CJD41_RS06000	COG0667	Aldo Keto reductase
CJD41_RS06005	COG0583	DNA-binding transcription factor activity
CJD41_RS06030	COG1459	type II secretion system
CJD41_RS06035	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CJD41_RS06040	COG4969	Belongs to the N-Me-Phe pilin family
CJD41_RS06060	COG3725	Membrane protein required for beta-lactamase induction
CJD41_RS06065	COG3940	Belongs to the glycosyl hydrolase 43 family
CJD41_RS06070	COG2211	Major facilitator Superfamily
CJD41_RS06085	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
CJD41_RS06090	COG0508	dehydrogenase complex catalyzes the overall conversion of
CJD41_RS06095	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CJD41_RS06150	COG1349	DNA-binding transcription factor activity
CJD41_RS06175	COG4993	Dehydrogenase
CJD41_RS06185	COG0288	reversible hydration of carbon dioxide
CJD41_RS06190	COG1131	(ABC) transporter
CJD41_RS06195	COG0842	Transport permease protein
CJD41_RS06200	COG3539	Fimbrial protein
CJD41_RS06220	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS06225	COG0726	polysaccharide deacetylase
CJD41_RS06245	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CJD41_RS06270	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
CJD41_RS06275	COG1643	Atp-dependent helicase
CJD41_RS06280	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CJD41_RS06285	COG4774	siderophore transport
CJD41_RS06290	COG1120	ATPase activity
CJD41_RS06295	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CJD41_RS06325	COG3539	Fimbrial protein
CJD41_RS06360	COG2860	membrane
CJD41_RS06385	COG3835	regulator
CJD41_RS06395	COG0477	Major facilitator Superfamily
CJD41_RS06440	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CJD41_RS06455	COG0575	Belongs to the CDS family
CJD41_RS06515	COG1982	Orn Lys Arg decarboxylase major
CJD41_RS06520	COG0346	lactoylglutathione lyase activity
CJD41_RS06530	COG4568	rho-dependent transcription termination
CJD41_RS06545	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CJD41_RS06550	COG3015	lipoprotein NlpE involved in copper resistance
CJD41_RS06560	COG1720	tRNA m6t6A37 methyltransferase activity
CJD41_RS06585	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CJD41_RS06615	COG0477	Major facilitator Superfamily
CJD41_RS06620	COG5544	Lipoprotein
CJD41_RS06625	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CJD41_RS06635	COG3148	PFAM DTW domain containing protein
CJD41_RS06645	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CJD41_RS06665	COG0583	DNA-binding transcription factor activity
CJD41_RS06670	COG0513	Belongs to the DEAD box helicase family
CJD41_RS06680	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CJD41_RS06705	COG3086	response to oxidative stress
CJD41_RS06750	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJD41_RS06755	COG0583	DNA-binding transcription factor activity
CJD41_RS06760	COG2223	nitrite transmembrane transporter activity
CJD41_RS06765	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CJD41_RS06770	COG1737	Transcriptional regulator
CJD41_RS06780	COG1263	PTS System
CJD41_RS06780	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CJD41_RS06785	COG0560	Phosphoserine phosphatase
CJD41_RS06815	COG3170	Tfp pilus assembly protein FimV
CJD41_RS06820	COG2204	response regulator
CJD41_RS06825	COG0347	Belongs to the P(II) protein family
CJD41_RS06830	COG3104	oligopeptide transport
CJD41_RS06840	COG0531	amino acid
CJD41_RS06845	COG3710	Transcriptional regulator
CJD41_RS06850	COG1017	nitric oxide dioxygenase activity
CJD41_RS06850	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CJD41_RS06860	COG2814	Major facilitator Superfamily
CJD41_RS06865	COG3711	transcriptional antiterminator
CJD41_RS06875	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
CJD41_RS06920	COG0822	iron-sulfur transferase activity
CJD41_RS06940	COG0633	Ferredoxin
CJD41_RS06945	COG2975	iron-sulfur cluster assembly
CJD41_RS06975	COG2897	thiosulfate sulfurtransferase activity
CJD41_RS06980	COG2373	Large extracellular alpha-helical protein
CJD41_RS06985	COG4953	penicillin-binding protein 1C
CJD41_RS06990	COG0243	molybdopterin cofactor binding
CJD41_RS06995	COG0437	4 iron, 4 sulfur cluster binding
CJD41_RS07035	COG2976	Protein conserved in bacteria
CJD41_RS07050	COG1645	bacterial-type flagellum-dependent swarming motility
CJD41_RS07095	COG0516	GMP reductase activity
CJD41_RS07095	COG0517	IMP dehydrogenase activity
CJD41_RS07145	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CJD41_RS07165	COG2233	PERMEase
CJD41_RS07175	COG1393	Belongs to the ArsC family
CJD41_RS07185	COG0628	permease
CJD41_RS07190	COG3835	regulator
CJD41_RS07195	COG2610	gluconate transmembrane transporter activity
CJD41_RS07200	COG1929	Belongs to the glycerate kinase type-1 family
CJD41_RS07205	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CJD41_RS07210	COG2716	regulation of RNA biosynthetic process
CJD41_RS07215	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJD41_RS07220	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CJD41_RS07230	COG2321	neutral zinc metallopeptidase
CJD41_RS07250	COG1393	Belongs to the ArsC family
CJD41_RS07265	COG3850	Histidine kinase
CJD41_RS07275	COG0493	'glutamate synthase
CJD41_RS07275	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJD41_RS07290	COG5342	invasion associated locus B
CJD41_RS07300	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CJD41_RS07440	COG2837	iron assimilation
CJD41_RS07460	COG4208	sulfate ABC transporter
CJD41_RS07515	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS07540	COG3530	Putative quorum-sensing-regulated virulence factor
CJD41_RS07545	COG0385	Bile acid
CJD41_RS07560	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
CJD41_RS07565	COG2211	Major facilitator Superfamily
CJD41_RS07575	COG0583	DNA-binding transcription factor activity
CJD41_RS07600	COG3415	Transposase
CJD41_RS07605	COG3415	Transposase
CJD41_RS07625	COG2199	diguanylate cyclase activity
CJD41_RS07625	COG2200	EAL domain
CJD41_RS07630	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CJD41_RS07645	COG0667	Aldo Keto reductase
CJD41_RS07650	COG3961	Belongs to the TPP enzyme family
CJD41_RS07665	COG0436	Aminotransferase
CJD41_RS07675	COG1560	Kdo2-lipid A biosynthetic process
CJD41_RS07735	COG0463	Glycosyl transferase, family 2
CJD41_RS07740	COG2246	polysaccharide biosynthetic process
CJD41_RS07760	COG2116	formate transmembrane transporter activity
CJD41_RS07775	COG3691	Protein conserved in bacteria
CJD41_RS07790	COG2062	phosphohistidine phosphatase, SixA
CJD41_RS07815	COG0730	response to heat
CJD41_RS07820	COG3101	peptidyl-lysine hydroxylation
CJD41_RS07835	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CJD41_RS07855	COG3423	Transcriptional regulator
CJD41_RS07880	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CJD41_RS07890	COG0586	Pfam SNARE associated Golgi protein
CJD41_RS07900	COG0285	dihydrofolate synthase activity
CJD41_RS07905	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
CJD41_RS07910	COG1286	toxin biosynthetic process
CJD41_RS07915	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CJD41_RS07935	COG3457	Alanine racemase
CJD41_RS07940	COG0833	amino acid
CJD41_RS07980	COG1090	epimerase
CJD41_RS07985	COG0625	glutathione transferase activity
CJD41_RS07990	COG0625	glutathione transferase activity
CJD41_RS07995	COG0622	Phosphoesterase
CJD41_RS08005	COG1609	Transcriptional regulator
CJD41_RS08015	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS08025	COG3037	sugar-specific permease SgaT UlaA
CJD41_RS08030	COG3959	Transketolase, thiamine diphosphate binding domain
CJD41_RS08035	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CJD41_RS08040	COG1288	antiporter activity
CJD41_RS08065	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CJD41_RS08070	COG0490	domain, Protein
CJD41_RS08070	COG0471	metal ion transport
CJD41_RS08080	COG0436	Aminotransferase
CJD41_RS08090	COG0583	DNA-binding transcription factor activity
CJD41_RS08140	COG0839	Belongs to the complex I subunit 6 family
CJD41_RS08150	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CJD41_RS08160	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJD41_RS08175	COG2304	oxidoreductase activity
CJD41_RS08180	COG0835	chemotaxis
CJD41_RS08180	COG0784	Response regulator, receiver
CJD41_RS08190	COG2153	protein acetylation
CJD41_RS08195	COG4575	ribosome binding
CJD41_RS08200	COG1169	isochorismate synthase
CJD41_RS08290	COG1414	Transcriptional regulator
CJD41_RS08300	COG2271	Major facilitator Superfamily
CJD41_RS08325	COG0247	lactate metabolic process
CJD41_RS08335	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CJD41_RS08340	COG2271	Major facilitator Superfamily
CJD41_RS08345	COG0584	glycerophosphoryl diester phosphodiesterase
CJD41_RS08350	COG0583	DNA-binding transcription factor activity
CJD41_RS08360	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CJD41_RS08390	COG4948	Mandelate Racemase Muconate Lactonizing
CJD41_RS08395	COG4948	Mandelate Racemase Muconate Lactonizing
CJD41_RS08420	COG2198	Histidine kinase
CJD41_RS08420	COG0642	Histidine kinase
CJD41_RS08445	COG4615	Cyclic peptide transporter
CJD41_RS08455	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJD41_RS08455	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJD41_RS08460	COG3062	negative regulation of establishment of protein localization
CJD41_RS08470	COG0437	4 iron, 4 sulfur cluster binding
CJD41_RS08475	COG0348	domain, Protein
CJD41_RS08480	COG3043	anaerobic respiration
CJD41_RS08485	COG3005	denitrification pathway
CJD41_RS08490	COG4133	protoheme IX ABC transporter activity
CJD41_RS08495	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJD41_RS08500	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJD41_RS08505	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJD41_RS08515	COG1138	Cytochrome C-type biogenesis protein
CJD41_RS08525	COG3088	subunit of a heme lyase
CJD41_RS08525	COG4235	cytochrome complex assembly
CJD41_RS08530	COG2197	response regulator
CJD41_RS08600	COG1061	Type III restriction enzyme res subunit
CJD41_RS08610	COG2814	Major facilitator Superfamily
CJD41_RS08620	COG4172	Belongs to the ABC transporter superfamily
CJD41_RS08625	COG4239	(ABC) transporter, permease
CJD41_RS08630	COG4174	ABC transporter (Permease)
CJD41_RS08635	COG4166	transmembrane transport
CJD41_RS08640	COG2200	EAL domain
CJD41_RS08650	COG0791	NLP P60 protein
CJD41_RS08665	COG0523	cobalamin synthesis protein
CJD41_RS08705	COG1105	Belongs to the carbohydrate kinase PfkB family
CJD41_RS08710	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CJD41_RS08710	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CJD41_RS08710	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CJD41_RS08720	COG2855	membrane
CJD41_RS08725	COG0583	DNA-binding transcription factor activity
CJD41_RS08730	COG0833	amino acid
CJD41_RS08740	COG4771	TonB-dependent receptor
CJD41_RS08750	COG0560	Phosphoserine phosphatase
CJD41_RS08755	COG1760	l-serine dehydratase
CJD41_RS08780	COG2311	Membrane
CJD41_RS08810	COG0493	'glutamate synthase
CJD41_RS08820	COG2949	membrane
CJD41_RS08830	COG1346	cytolysis
CJD41_RS08845	COG2271	Major facilitator Superfamily
CJD41_RS08860	COG0625	glutathione transferase activity
CJD41_RS08865	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CJD41_RS08880	COG1538	Outer membrane efflux protein
CJD41_RS08885	COG1028	Short-chain dehydrogenase reductase Sdr
CJD41_RS08890	COG0586	Pfam SNARE associated Golgi protein
CJD41_RS08905	COG1686	Belongs to the peptidase S11 family
CJD41_RS08910	COG0277	FAD linked oxidase domain protein
CJD41_RS08920	COG1732	Glycine betaine
CJD41_RS08925	COG1174	glycine betaine transport
CJD41_RS08930	COG1125	glycine betaine transport
CJD41_RS08935	COG1174	glycine betaine transport
CJD41_RS08950	COG3275	phosphorelay sensor kinase activity
CJD41_RS08960	COG4807	Protein conserved in bacteria
CJD41_RS08970	COG4808	Protein conserved in bacteria
CJD41_RS09010	COG5455	response to cobalt ion
CJD41_RS09025	COG2188	Transcriptional regulator
CJD41_RS09030	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJD41_RS09035	COG1397	ADP-ribosylglycohydrolase
CJD41_RS09040	COG2211	Major facilitator Superfamily
CJD41_RS09045	COG1830	Aldolase
CJD41_RS09070	COG0826	peptidase U32
CJD41_RS09095	COG0745	RESPONSE REGULATOR receiver
CJD41_RS09100	COG2205	protein histidine kinase activity
CJD41_RS09130	COG0443	Heat shock 70 kDa protein
CJD41_RS09140	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CJD41_RS09145	COG5002	protein histidine kinase activity
CJD41_RS09145	COG3447	MASE1 domain protein
CJD41_RS09145	COG5001	Diguanylate cyclase
CJD41_RS09160	COG2982	Protein involved in outer membrane biogenesis
CJD41_RS09165	COG1253	flavin adenine dinucleotide binding
CJD41_RS09190	COG0463	Glycosyl transferase, family 2
CJD41_RS09195	COG1045	serine acetyltransferase
CJD41_RS09200	COG0438	transferase activity, transferring glycosyl groups
CJD41_RS09210	COG1216	Glycosyl transferase, family 2
CJD41_RS09215	COG0110	maltose O-acetyltransferase activity
CJD41_RS09220	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
CJD41_RS09225	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJD41_RS09235	COG0297	glycogen (starch) synthase activity
CJD41_RS09250	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CJD41_RS09255	COG2244	polysaccharide biosynthetic process
CJD41_RS09260	COG2327	Polysaccharide pyruvyl transferase
CJD41_RS09305	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CJD41_RS09320	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJD41_RS09325	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJD41_RS09330	COG2244	polysaccharide biosynthetic process
CJD41_RS09430	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJD41_RS09435	COG0583	DNA-binding transcription factor activity
CJD41_RS09445	COG0531	amino acid
CJD41_RS09450	COG2925	Exonuclease
CJD41_RS09490	COG1289	transmembrane transporter activity
CJD41_RS09525	COG4656	Part of a membrane complex involved in electron transport
CJD41_RS09530	COG1012	belongs to the aldehyde dehydrogenase family
CJD41_RS09530	COG1454	alcohol dehydrogenase
CJD41_RS09545	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
CJD41_RS09560	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
CJD41_RS09690	COG1122	ATPase activity
CJD41_RS09755	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CJD41_RS09955	COG0582	viral genome integration into host DNA
CJD41_RS09995	COG3547	Transposase (IS116 IS110 IS902 family)
CJD41_RS10030	COG3381	protein complex oligomerization
CJD41_RS10085	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CJD41_RS10110	COG5645	(Lipo)protein
CJD41_RS10130	COG1560	Kdo2-lipid A biosynthetic process
CJD41_RS10145	COG3038	cytochrome b561
CJD41_RS10175	COG2999	glutathione oxidoreductase activity
CJD41_RS10185	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CJD41_RS10290	COG1530	ribonuclease E activity
CJD41_RS10355	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CJD41_RS10360	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CJD41_RS10365	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CJD41_RS10375	COG0470	DNA polymerase III
CJD41_RS10380	COG0084	hydrolase, TatD family'
CJD41_RS10395	COG0537	adenosine 5'-monophosphoramidase activity
CJD41_RS10400	COG5633	Lipoprotein
CJD41_RS10425	COG1252	NADH dehydrogenase
CJD41_RS10430	COG3134	Outer membrane lipoprotein
CJD41_RS10435	COG1309	transcriptional regulator
CJD41_RS10445	COG1388	LysM domain
CJD41_RS10445	COG1376	ErfK ybiS ycfS ynhG family protein
CJD41_RS10450	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CJD41_RS10455	COG4591	ABC-type transport system involved in lipoprotein release permease component
CJD41_RS10460	COG1136	(ABC) transporter
CJD41_RS10465	COG4591	ABC-type transport system involved in lipoprotein release permease component
CJD41_RS10485	COG1177	transmembrane transport
CJD41_RS10515	COG2850	peptidyl-arginine hydroxylation
CJD41_RS10530	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CJD41_RS10565	COG0538	isocitrate dehydrogenase activity
CJD41_RS10645	COG0071	Belongs to the small heat shock protein (HSP20) family
CJD41_RS10685	COG1124	(ABC) transporter
CJD41_RS10690	COG0668	transmembrane transport
CJD41_RS10705	COG3443	Belongs to the bacterial solute-binding protein 9 family
CJD41_RS10720	COG0789	Transcriptional regulator
CJD41_RS10735	COG1605	Chorismate mutase
CJD41_RS10750	COG3615	Tellurite resistance protein tehB
CJD41_RS10770	COG2261	transglycosylase associated protein
CJD41_RS10780	COG3042	response to heat
CJD41_RS10790	COG3189	MarR family transcriptional regulator
CJD41_RS10795	COG2807	transmembrane transport
CJD41_RS10800	COG2207	Transcriptional regulator
CJD41_RS10815	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CJD41_RS10820	COG2199	diguanylate cyclase activity
CJD41_RS10840	COG3713	MltA-interacting MipA family protein
CJD41_RS10850	COG0656	L-ascorbic acid biosynthetic process
CJD41_RS10875	COG3139	Protein of unknown function (DUF1315)
CJD41_RS10880	COG1063	alcohol dehydrogenase
CJD41_RS10885	COG2271	Major facilitator Superfamily
CJD41_RS10895	COG0191	fructose-bisphosphate aldolase activity
CJD41_RS10900	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJD41_RS10905	COG0667	Aldo Keto reductase
CJD41_RS10910	COG1349	DNA-binding transcription factor activity
CJD41_RS10920	COG1335	isochorismatase
CJD41_RS10925	COG0252	asparaginase activity
CJD41_RS10930	COG0616	signal peptide processing
CJD41_RS10935	COG0778	Nitroreductase
CJD41_RS10945	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CJD41_RS10960	COG0494	nUDIX hydrolase
CJD41_RS11000	COG3678	ATP-independent chaperone mediated protein folding
CJD41_RS11005	COG0322	excinuclease ABC activity
CJD41_RS11015	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CJD41_RS11025	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CJD41_RS11030	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CJD41_RS11035	COG1447	Phosphotransferase system cellobiose-specific component IIA
CJD41_RS11040	COG2169	Transcriptional regulator
CJD41_RS11040	COG1917	Cupin 2, conserved barrel domain protein
CJD41_RS11045	COG1486	melibiose metabolic process
CJD41_RS11055	COG0753	catalase activity
CJD41_RS11065	COG1823	symporter activity
CJD41_RS11070	COG1988	membrane-bound metal-dependent
CJD41_RS11075	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CJD41_RS11085	COG3001	Fructosamine kinase
CJD41_RS11095	COG1105	Belongs to the carbohydrate kinase PfkB family
CJD41_RS11100	COG3137	Salt-induced outer membrane protein
CJD41_RS11190	COG4256	Hemin uptake protein
CJD41_RS11215	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
CJD41_RS11225	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CJD41_RS11235	COG1917	Cupin 2, conserved barrel domain protein
CJD41_RS11235	COG2207	Transcriptional regulator
CJD41_RS11240	COG1960	acyl-CoA dehydrogenase activity
CJD41_RS11245	COG4670	ketone body catabolic process
CJD41_RS11260	COG2271	Major facilitator Superfamily
CJD41_RS11265	COG0738	Major facilitator superfamily
CJD41_RS11280	COG0628	permease
CJD41_RS11285	COG0277	FAD linked oxidase domain protein
CJD41_RS11285	COG0247	lactate metabolic process
CJD41_RS11290	COG2050	protein possibly involved in aromatic compounds catabolism
CJD41_RS11300	COG1823	symporter activity
CJD41_RS11305	COG0316	Belongs to the HesB IscA family
CJD41_RS11310	COG0719	Fe-S assembly protein
CJD41_RS11315	COG0396	ATPase activity
CJD41_RS11320	COG0719	Fe-S assembly protein
CJD41_RS11335	COG1376	ErfK ybiS ycfS ynhG family protein
CJD41_RS11360	COG0531	amino acid
CJD41_RS11375	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJD41_RS11410	COG3272	Protein of unknown function (DUF1722)
CJD41_RS11415	COG0789	Transcriptional regulator
CJD41_RS11595	COG0307	riboflavin synthase, alpha
CJD41_RS11600	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CJD41_RS11605	COG2814	Major facilitator Superfamily
CJD41_RS11610	COG0583	DNA-binding transcription factor activity
CJD41_RS11630	COG0791	NLP P60 protein
CJD41_RS11635	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CJD41_RS11650	COG1902	pentaerythritol trinitrate reductase activity
CJD41_RS11655	COG1309	transcriptional regulator
CJD41_RS11660	COG3313	Fe-S protein
CJD41_RS11665	COG4989	oxidoreductase activity
CJD41_RS11680	COG1566	PFAM secretion protein HlyD family protein
CJD41_RS11705	COG3895	Periplasmic Protein
CJD41_RS11725	COG0625	glutathione transferase activity
CJD41_RS11735	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CJD41_RS11785	COG0673	inositol 2-dehydrogenase activity
CJD41_RS11800	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CJD41_RS11800	COG1263	PTS System
CJD41_RS11805	COG5339	Protein conserved in bacteria
CJD41_RS11830	COG2205	protein histidine kinase activity
CJD41_RS11835	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
CJD41_RS11840	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJD41_RS11850	COG0745	RESPONSE REGULATOR receiver
CJD41_RS11855	COG3136	membrane protein required for alginate biosynthesis
CJD41_RS11860	COG0531	amino acid
CJD41_RS11870	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CJD41_RS11875	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CJD41_RS11880	COG0628	permease
CJD41_RS11910	COG2814	Major facilitator Superfamily
CJD41_RS11915	COG0583	DNA-binding transcription factor activity
CJD41_RS11925	COG1940	carbohydrate kinase activity
CJD41_RS11965	COG3302	dmso reductase anchor subunit
CJD41_RS11970	COG0437	4 iron, 4 sulfur cluster binding
CJD41_RS11975	COG0243	molybdopterin cofactor binding
CJD41_RS11980	COG0243	molybdopterin cofactor binding
CJD41_RS11995	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CJD41_RS12015	COG1063	alcohol dehydrogenase
CJD41_RS12020	COG0477	Major facilitator Superfamily
CJD41_RS12025	COG0246	Mannitol dehydrogenase
CJD41_RS12035	COG1802	Transcriptional regulator
CJD41_RS12055	COG3729	General stress protein
CJD41_RS12060	COG1546	Belongs to the CinA family
CJD41_RS12065	COG3111	PFAM Bacterial OB fold (BOF) protein
CJD41_RS12075	COG2814	Major facilitator Superfamily
CJD41_RS12110	COG0583	DNA-binding transcription factor activity
CJD41_RS12115	COG1012	belongs to the aldehyde dehydrogenase family
CJD41_RS12155	COG1773	rubredoxin
CJD41_RS12180	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CJD41_RS12185	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CJD41_RS12195	COG2186	Transcriptional regulator
CJD41_RS12200	COG1063	alcohol dehydrogenase
CJD41_RS12205	COG2271	Major facilitator Superfamily
CJD41_RS12255	COG1609	Transcriptional regulator
CJD41_RS12285	COG1764	response to oxidative stress
CJD41_RS12305	COG1064	alcohol dehydrogenase
CJD41_RS12310	COG2864	formate dehydrogenase
CJD41_RS12315	COG0437	4 iron, 4 sulfur cluster binding
CJD41_RS12360	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CJD41_RS12365	COG1140	nitrate reductase beta subunit
CJD41_RS12370	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CJD41_RS12375	COG2181	nitrate reductase activity
CJD41_RS12420	COG1802	Transcriptional regulator
CJD41_RS12425	COG2130	NADP-dependent
CJD41_RS12435	COG3238	Protein conserved in bacteria
CJD41_RS12475	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJD41_RS12480	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
CJD41_RS12505	COG0826	peptidase U32
CJD41_RS12510	COG1396	sequence-specific DNA binding
CJD41_RS12525	COG0500	methyltransferase
CJD41_RS12530	COG1275	C4-dicarboxylate transporter malic acid transport protein
CJD41_RS12535	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CJD41_RS12540	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CJD41_RS12550	COG3414	Phosphotransferase system galactitol-specific IIB component
CJD41_RS12555	COG3775	system Galactitol-specific IIC component
CJD41_RS12560	COG0434	BtpA family
CJD41_RS12565	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS12570	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CJD41_RS12575	COG1349	DNA-binding transcription factor activity
CJD41_RS12590	COG1028	Short-chain dehydrogenase reductase Sdr
CJD41_RS12600	COG1063	alcohol dehydrogenase
CJD41_RS12610	COG2353	YceI-like domain
CJD41_RS12620	COG2272	Belongs to the type-B carboxylesterase lipase family
CJD41_RS12625	COG5383	Protein conserved in bacteria
CJD41_RS12630	COG0583	DNA-binding transcription factor activity
CJD41_RS12635	COG0840	transmembrane signaling receptor activity
CJD41_RS12675	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJD41_RS12680	COG0765	amino acid transport
CJD41_RS12690	COG0765	amino acid transport
CJD41_RS12700	COG0500	methyltransferase
CJD41_RS12705	COG3038	cytochrome b561
CJD41_RS12710	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CJD41_RS12715	COG1643	Atp-dependent helicase
CJD41_RS12730	COG3784	Protein of unknown function (DUF1318)
CJD41_RS12740	COG2911	Protein conserved in bacteria
CJD41_RS12745	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CJD41_RS12750	COG3187	Heat shock protein
CJD41_RS12755	COG3042	response to heat
CJD41_RS12765	COG0674	pyruvate-flavodoxin oxidoreductase activity
CJD41_RS12765	COG1013	pyruvate-flavodoxin oxidoreductase activity
CJD41_RS12765	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CJD41_RS12765	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJD41_RS12775	COG2076	Multidrug Resistance protein
CJD41_RS12795	COG0513	Belongs to the DEAD box helicase family
CJD41_RS12805	COG0840	transmembrane signaling receptor activity
CJD41_RS12815	COG2840	Smr protein MutS2
CJD41_RS12835	COG3182	Iron-regulated membrane protein
CJD41_RS12840	COG0668	transmembrane transport
CJD41_RS12845	COG0656	L-ascorbic acid biosynthetic process
CJD41_RS12850	COG0583	DNA-binding transcription factor activity
CJD41_RS12860	COG4166	transmembrane transport
CJD41_RS12865	COG2866	Carboxypeptidase
CJD41_RS12870	COG4948	Mandelate Racemase Muconate Lactonizing
CJD41_RS12890	COG3106	COG3106 Predicted ATPase
CJD41_RS12895	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CJD41_RS12905	COG1983	PspC domain protein
CJD41_RS12915	COG1842	Phage shock protein A
CJD41_RS12920	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CJD41_RS12995	COG5001	Diguanylate cyclase
CJD41_RS13005	COG1349	DNA-binding transcription factor activity
CJD41_RS13025	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CJD41_RS13030	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
CJD41_RS13035	COG0671	phosphoesterase, PA-phosphatase related
CJD41_RS13075	COG0616	signal peptide processing
CJD41_RS13080	COG1028	Short-chain dehydrogenase reductase Sdr
CJD41_RS13095	COG0009	L-threonylcarbamoyladenylate synthase
CJD41_RS13120	COG0134	indole-3-glycerol-phosphate synthase activity
CJD41_RS13120	COG0135	phosphoribosylanthranilate isomerase activity
CJD41_RS13135	COG3729	General stress protein
CJD41_RS13140	COG3685	Protein conserved in bacteria
CJD41_RS13145	COG3685	Protein conserved in bacteria
CJD41_RS13150	COG3546	catalase activity
CJD41_RS13160	COG0727	PFAM Uncharacterised protein family (UPF0153)
CJD41_RS13185	COG2350	Protein conserved in bacteria
CJD41_RS13200	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CJD41_RS13235	COG2095	MarC family integral membrane protein
CJD41_RS13240	COG1454	alcohol dehydrogenase
CJD41_RS13240	COG1012	belongs to the aldehyde dehydrogenase family
CJD41_RS13255	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CJD41_RS13260	COG0745	RESPONSE REGULATOR receiver
CJD41_RS13275	COG0788	formyltetrahydrofolate deformylase activity
CJD41_RS13310	COG2181	nitrate reductase activity
CJD41_RS13315	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CJD41_RS13320	COG1140	nitrate reductase beta subunit
CJD41_RS13325	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CJD41_RS13330	COG2223	nitrite transmembrane transporter activity
CJD41_RS13345	COG2197	response regulator
CJD41_RS13350	COG4932	domain protein
CJD41_RS13355	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
CJD41_RS13360	COG4572	Cation transport regulator
CJD41_RS13415	COG0659	secondary active sulfate transmembrane transporter activity
CJD41_RS13430	COG0012	GTP binding
CJD41_RS13450	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CJD41_RS13460	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
CJD41_RS13465	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CJD41_RS13470	COG1999	signal sequence binding
CJD41_RS13475	COG1773	rubredoxin
CJD41_RS13480	COG1271	oxidase subunit
CJD41_RS13485	COG1294	oxidase, subunit
CJD41_RS13495	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CJD41_RS13520	COG1619	proteins homologs of microcin C7 resistance protein MccF
CJD41_RS13535	COG2719	SpoVR family
CJD41_RS13575	COG0179	Fumarylacetoacetate (FAA) hydrolase
CJD41_RS13590	COG2894	cell division
CJD41_RS13600	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
CJD41_RS13615	COG3065	identical protein binding
CJD41_RS13625	COG1199	ATP-dependent helicase activity
CJD41_RS13630	COG0251	oxidation-reduction process
CJD41_RS13650	COG1760	l-serine dehydratase
CJD41_RS13655	COG2200	EAL domain
CJD41_RS13660	COG1253	flavin adenine dinucleotide binding
CJD41_RS13670	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CJD41_RS13670	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS13675	COG3715	PTS system
CJD41_RS13680	COG3716	PTS system mannose fructose sorbose family IID component
CJD41_RS13700	COG2226	methyltransferase
CJD41_RS13705	COG0768	penicillin binding
CJD41_RS13735	COG1414	Transcriptional regulator
CJD41_RS13740	COG2814	Major facilitator Superfamily
CJD41_RS13760	COG1956	GAF domain-containing protein
CJD41_RS13765	COG2995	paraquat-inducible protein a
CJD41_RS13770	COG3008	intermembrane lipid transfer
CJD41_RS13805	COG5562	phage envelope protein
CJD41_RS13815	COG0454	-acetyltransferase
CJD41_RS13925	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CJD41_RS14135	COG2015	COG2015, Alkyl sulfatase and related hydrolases
CJD41_RS14140	COG4251	negative regulation of phosphorylation
CJD41_RS14140	COG3706	GGDEF domain
CJD41_RS14140	COG5001	Diguanylate cyclase
CJD41_RS14140	COG2203	Gaf domain
CJD41_RS14155	COG3756	Protein conserved in bacteria
CJD41_RS14195	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CJD41_RS14200	COG3723	Recombinational DNA repair protein, rece pathway
CJD41_RS14235	COG1276	copper resistance
CJD41_RS14240	COG2372	response to copper ion
CJD41_RS14250	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CJD41_RS14255	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CJD41_RS14260	COG1770	oligopeptidase
CJD41_RS14265	COG2979	Protein of unknown function (DUF533)
CJD41_RS14275	COG3141	response to X-ray
CJD41_RS14285	COG0800	Aldolase
CJD41_RS14290	COG0129	dihydroxy-acid dehydratase activity
CJD41_RS14295	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CJD41_RS14305	COG1737	Transcriptional regulator
CJD41_RS14315	COG1560	Kdo2-lipid A biosynthetic process
CJD41_RS14325	COG0739	heme binding
CJD41_RS14330	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
CJD41_RS14340	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CJD41_RS14375	COG0494	nUDIX hydrolase
CJD41_RS14390	COG1801	Protein of unknown function DUF72
CJD41_RS14395	COG3788	relative of glutathione S-transferase, MAPEG superfamily
CJD41_RS14420	COG3102	Protein conserved in bacteria
CJD41_RS14435	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
CJD41_RS14530	COG1172	Belongs to the binding-protein-dependent transport system permease family
CJD41_RS14540	COG1528	Iron-storage protein
CJD41_RS14555	COG1528	Iron-storage protein
CJD41_RS14565	COG0814	amino acid
CJD41_RS14615	COG2197	response regulator
CJD41_RS14630	COG2197	response regulator
CJD41_RS14635	COG1126	abc transporter atp-binding protein
CJD41_RS14640	COG0765	amino acid transport
CJD41_RS14650	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJD41_RS14710	COG0425	Belongs to the sulfur carrier protein TusA family
CJD41_RS14815	COG5475	Uncharacterized small protein (DUF2158)
CJD41_RS14820	COG2354	Protein conserved in bacteria
CJD41_RS14825	COG0697	spore germination
CJD41_RS14830	COG3727	T/G mismatch-specific endonuclease activity
CJD41_RS14835	COG0270	DNA (cytosine-5-)-methyltransferase activity
CJD41_RS14840	COG1418	mRNA catabolic process
CJD41_RS14855	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJD41_RS14895	COG3209	COG3209 Rhs family protein
CJD41_RS14905	COG3209	COG3209 Rhs family protein
CJD41_RS15005	COG3157	Type VI secretion system effector, Hcp
CJD41_RS15045	COG0673	inositol 2-dehydrogenase activity
CJD41_RS15050	COG2814	Major facilitator Superfamily
CJD41_RS15075	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CJD41_RS15080	COG1737	Transcriptional regulator
CJD41_RS15085	COG1702	phosphate starvation-inducible protein PhoH
CJD41_RS15115	COG1309	transcriptional regulator
CJD41_RS15120	COG3729	General stress protein
CJD41_RS15145	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CJD41_RS15150	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CJD41_RS15150	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CJD41_RS15155	COG4232	protein-disulfide reductase activity
CJD41_RS15210	COG3971	2-oxopent-4-enoate hydratase activity
CJD41_RS15220	COG3384	dioxygenase
CJD41_RS15225	COG1012	belongs to the aldehyde dehydrogenase family
CJD41_RS15235	COG1846	Transcriptional regulator
CJD41_RS15240	COG2368	4-hydroxyphenylacetate
CJD41_RS15260	COG0745	RESPONSE REGULATOR receiver
CJD41_RS15265	COG2205	protein histidine kinase activity
CJD41_RS15315	COG0670	Belongs to the BI1 family
CJD41_RS15335	COG1881	PFAM PEBP family protein
CJD41_RS15350	COG1832	CoA-binding protein
CJD41_RS15365	COG0210	DNA helicase
CJD41_RS15370	COG3304	Inner membrane component domain
CJD41_RS15375	COG1289	transmembrane transporter activity
CJD41_RS15380	COG3070	regulator of competence-specific genes
CJD41_RS15400	COG1067	ATP-dependent peptidase activity
CJD41_RS15410	COG3130	regulation of translation
CJD41_RS15415	COG3009	Protein conserved in bacteria
CJD41_RS15420	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CJD41_RS15420	COG3008	intermembrane lipid transfer
CJD41_RS15425	COG2995	paraquat-inducible protein a
CJD41_RS15430	COG0488	(ABC) transporter
CJD41_RS15440	COG3217	Mosc domain protein beta barrel domain protein
CJD41_RS15440	COG0633	Ferredoxin
CJD41_RS15455	COG0308	aminopeptidase N
CJD41_RS15465	COG1115	amino acid carrier protein
CJD41_RS15480	COG1522	sequence-specific DNA binding
CJD41_RS15485	COG0017	Asparaginyl-tRNA synthetase
CJD41_RS15490	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJD41_RS15500	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJD41_RS15505	COG3108	Peptidase M15
CJD41_RS15515	COG2989	Protein conserved in bacteria
CJD41_RS15525	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
CJD41_RS15535	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CJD41_RS15540	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CJD41_RS15545	COG3173	Aminoglycoside phosphotransferase
CJD41_RS15575	COG2333	competence protein COMEC
CJD41_RS15575	COG0658	competence protein
CJD41_RS15585	COG0539	negative regulation of cytoplasmic translation
CJD41_RS15595	COG0501	Belongs to the peptidase M48B family
CJD41_RS15610	COG2323	membrane
CJD41_RS15615	COG1944	ATP diphosphatase activity
CJD41_RS15620	COG2116	formate transmembrane transporter activity
CJD41_RS15625	COG1882	Formate acetyltransferase
CJD41_RS15640	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CJD41_RS15645	COG0531	amino acid
CJD41_RS15655	COG3302	dmso reductase anchor subunit
CJD41_RS15660	COG0437	4 iron, 4 sulfur cluster binding
CJD41_RS15675	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CJD41_RS15695	COG0492	ferredoxin-NADP+ reductase activity
CJD41_RS15700	COG4988	ABC transporter
CJD41_RS15705	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CJD41_RS15725	COG0583	DNA-binding transcription factor activity
CJD41_RS15735	COG1335	isochorismatase
CJD41_RS15760	COG0542	response to heat
CJD41_RS15770	COG1278	Cold shock
CJD41_RS15780	COG0577	efflux transmembrane transporter activity
CJD41_RS15780	COG1136	(ABC) transporter
CJD41_RS15785	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJD41_RS15790	COG2990	Protein conserved in bacteria
CJD41_RS15795	COG3593	DNA synthesis involved in DNA repair
CJD41_RS15805	COG2431	L-lysine efflux transmembrane transporter activity
CJD41_RS15815	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CJD41_RS15820	COG0028	Belongs to the TPP enzyme family
CJD41_RS15825	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
CJD41_RS15830	COG0702	epimerase
CJD41_RS15835	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJD41_RS15855	COG1126	abc transporter atp-binding protein
CJD41_RS15860	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJD41_RS15865	COG4215	(ABC) transporter
CJD41_RS15870	COG4160	amino acid transport
CJD41_RS15875	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJD41_RS15910	COG1177	transmembrane transport
CJD41_RS15915	COG1176	ABC-type spermidine putrescine transport system, permease component I
CJD41_RS15920	COG3842	ATPase activity
CJD41_RS15925	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CJD41_RS15970	COG3226	Transcriptional regulator
CJD41_RS15975	COG0738	Major facilitator superfamily
CJD41_RS15980	COG0561	phosphatase activity
CJD41_RS15985	COG2814	Major facilitator Superfamily
CJD41_RS15990	COG0671	phosphoesterase, PA-phosphatase related
CJD41_RS15995	COG1349	DNA-binding transcription factor activity
CJD41_RS16000	COG1686	Belongs to the peptidase S11 family
CJD41_RS16005	COG0625	glutathione transferase activity
CJD41_RS16020	COG2610	gluconate transmembrane transporter activity
CJD41_RS16025	COG0583	DNA-binding transcription factor activity
CJD41_RS16040	COG1960	acyl-CoA dehydrogenase activity
CJD41_RS16045	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
CJD41_RS16060	COG2301	Belongs to the HpcH HpaI aldolase family
CJD41_RS16085	COG0747	negative chemotaxis
CJD41_RS16110	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CJD41_RS16115	COG1882	Formate acetyltransferase
CJD41_RS16120	COG0561	phosphatase activity
CJD41_RS16130	COG0488	(ABC) transporter
CJD41_RS16135	COG1376	ErfK ybiS ycfS ynhG family protein
CJD41_RS16140	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CJD41_RS16155	COG2194	sulfuric ester hydrolase activity
CJD41_RS16160	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CJD41_RS16175	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJD41_RS16180	COG0765	amino acid transport
CJD41_RS16185	COG1126	abc transporter atp-binding protein
CJD41_RS16190	COG0668	transmembrane transport
CJD41_RS16200	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CJD41_RS16210	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJD41_RS16220	COG0513	Belongs to the DEAD box helicase family
CJD41_RS16225	COG1309	transcriptional regulator
CJD41_RS16235	COG1131	(ABC) transporter
CJD41_RS16240	COG0842	Transport permease protein
CJD41_RS16245	COG0842	Transport permease protein
CJD41_RS16255	COG3568	Endonuclease Exonuclease Phosphatase
CJD41_RS16260	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CJD41_RS16265	COG0392	lysyltransferase activity
CJD41_RS16290	COG0670	Belongs to the BI1 family
CJD41_RS16300	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CJD41_RS16310	COG0521	Mo-molybdopterin cofactor biosynthetic process
CJD41_RS16345	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CJD41_RS16370	COG1881	PFAM PEBP family protein
CJD41_RS16400	COG4677	pectinesterase activity
CJD41_RS16410	COG0561	phosphatase activity
CJD41_RS16420	COG4149	molybdate abc transporter
CJD41_RS16425	COG0725	ABC transporter, periplasmic molybdate-binding protein
CJD41_RS16435	COG3585	molybdate ion transport
CJD41_RS16435	COG2005	Transcriptional regulator
CJD41_RS16440	COG1119	ATPase activity
CJD41_RS16465	COG2017	converts alpha-aldose to the beta-anomer
CJD41_RS16480	COG1120	ATPase activity
CJD41_RS16485	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CJD41_RS16510	COG0490	domain, Protein
CJD41_RS16510	COG0471	metal ion transport
CJD41_RS16515	COG0583	DNA-binding transcription factor activity
CJD41_RS16520	COG0583	DNA-binding transcription factor activity
CJD41_RS16525	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CJD41_RS16530	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CJD41_RS16530	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CJD41_RS16535	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CJD41_RS16545	COG1230	cation diffusion facilitator family transporter
CJD41_RS16580	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
CJD41_RS16585	COG2885	chlorophyll binding
CJD41_RS16595	COG3064	Membrane
CJD41_RS16600	COG0848	biopolymer transport protein
CJD41_RS16605	COG0811	peptide transport
CJD41_RS16610	COG0824	Thioesterase
CJD41_RS16615	COG3790	cyd operon protein YbgE
CJD41_RS16620	COG4890	Cyd operon protein YbgT
CJD41_RS16625	COG1294	oxidase, subunit
CJD41_RS16630	COG1271	oxidase subunit
CJD41_RS16635	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CJD41_RS16645	COG0508	dehydrogenase complex catalyzes the overall conversion of
CJD41_RS16650	COG0567	Dehydrogenase, E1 component
CJD41_RS16665	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CJD41_RS16680	COG3180	Ammonia monooxygenase
CJD41_RS16695	COG1984	allophanate hydrolase subunit 2
CJD41_RS16700	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CJD41_RS16750	COG2205	protein histidine kinase activity
CJD41_RS16755	COG0745	RESPONSE REGULATOR receiver
CJD41_RS16765	COG1982	Orn Lys Arg decarboxylase major
CJD41_RS16770	COG0531	amino acid
CJD41_RS16780	COG0033	Phosphoglucomutase
CJD41_RS16790	COG0596	Alpha beta hydrolase
CJD41_RS16805	COG0735	belongs to the Fur family
CJD41_RS16810	COG0583	DNA-binding transcription factor activity
CJD41_RS16815	COG1053	succinate dehydrogenase
CJD41_RS16855	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CJD41_RS16860	COG1940	carbohydrate kinase activity
CJD41_RS16860	COG1846	Transcriptional regulator
CJD41_RS16865	COG0647	UMP catabolic process
CJD41_RS16870	COG0367	asparagine synthase
CJD41_RS16905	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CJD41_RS16915	COG1702	phosphate starvation-inducible protein PhoH
CJD41_RS16940	COG0765	amino acid transport
CJD41_RS16945	COG0765	amino acid transport
CJD41_RS16950	COG1126	abc transporter atp-binding protein
CJD41_RS16965	COG0443	Heat shock 70 kDa protein
CJD41_RS16970	COG2214	Heat shock protein DnaJ domain protein
CJD41_RS16980	COG2214	Heat shock protein DnaJ domain protein
CJD41_RS16995	COG2888	peptidyl-tyrosine sulfation
CJD41_RS17000	COG3290	protein histidine kinase activity
CJD41_RS17000	COG3829	transcription factor binding
CJD41_RS17030	COG1466	dna polymerase III delta subunit
CJD41_RS17050	COG0799	negative regulation of ribosome biogenesis
CJD41_RS17060	COG0768	penicillin binding
CJD41_RS17065	COG0772	Belongs to the SEDS family
CJD41_RS17075	COG1686	Belongs to the peptidase S11 family
CJD41_RS17090	COG0583	DNA-binding transcription factor activity
CJD41_RS17105	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CJD41_RS17135	COG4565	transcriptional regulatory protein
CJD41_RS17140	COG3290	protein histidine kinase activity
CJD41_RS17145	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
CJD41_RS17155	COG2301	Belongs to the HpcH HpaI aldolase family
CJD41_RS17160	COG3051	citrate lyase alpha subunit
CJD41_RS17175	COG0471	metal ion transport
CJD41_RS17180	COG3719	Belongs to the RNase T2 family
CJD41_RS17185	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CJD41_RS17190	COG1063	alcohol dehydrogenase
CJD41_RS17215	COG0243	molybdopterin cofactor binding
CJD41_RS17235	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CJD41_RS17245	COG0583	DNA-binding transcription factor activity
CJD41_RS17255	COG1475	DNA binding
CJD41_RS17260	COG0436	Aminotransferase
CJD41_RS17265	COG0371	Dehydrogenase
CJD41_RS17270	COG2879	small protein
CJD41_RS17275	COG1966	Carbon starvation protein
CJD41_RS17285	COG1028	Short-chain dehydrogenase reductase Sdr
CJD41_RS17290	COG1535	isochorismatase
CJD41_RS17290	COG3433	isochorismatase activity
CJD41_RS17295	COG1021	2,3-dihydroxybenzoate-AMP ligase
CJD41_RS17300	COG1169	isochorismate synthase
CJD41_RS17305	COG4592	Periplasmic binding protein
CJD41_RS17315	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CJD41_RS17320	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CJD41_RS17325	COG1120	ATPase activity
CJD41_RS17330	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
CJD41_RS17335	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
CJD41_RS17335	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CJD41_RS17340	COG3251	PFAM MbtH domain protein
CJD41_RS17345	COG2382	esterase
CJD41_RS17350	COG4771	TonB-dependent receptor
CJD41_RS17380	COG2315	Protein conserved in bacteria
CJD41_RS17400	COG0668	transmembrane transport
CJD41_RS17405	COG1113	amino acid transport
CJD41_RS17415	COG3059	membrane
CJD41_RS17425	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CJD41_RS17430	COG2207	Transcriptional regulator
CJD41_RS17435	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CJD41_RS17440	COG5002	protein histidine kinase activity
CJD41_RS17450	COG2246	polysaccharide biosynthetic process
CJD41_RS17455	COG0463	Glycosyl transferase, family 2
CJD41_RS17540	COG2501	S4 domain
CJD41_RS17545	COG1988	membrane-bound metal-dependent
CJD41_RS17565	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CJD41_RS17575	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CJD41_RS17580	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CJD41_RS17585	COG0549	Belongs to the carbamate kinase family
CJD41_RS17595	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CJD41_RS17600	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CJD41_RS17610	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJD41_RS17615	COG3257	ureidoglycine aminohydrolase activity
CJD41_RS17620	COG1929	Belongs to the glycerate kinase type-1 family
CJD41_RS17635	COG1953	Uracil, thiamine, allantoin
CJD41_RS17645	COG2084	Dehydrogenase
CJD41_RS17650	COG3622	Belongs to the hyi family
CJD41_RS17655	COG3960	tartronate-semialdehyde synthase activity
CJD41_RS17690	COG1464	Belongs to the NlpA lipoprotein family
CJD41_RS17700	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CJD41_RS17705	COG4181	ATPase activity
CJD41_RS17710	COG2755	lipolytic protein G-D-S-L family
CJD41_RS17715	COG0300	oxidoreductase activity
CJD41_RS17725	COG0390	transport system, permease component
CJD41_RS17730	COG4619	ABC transporter
CJD41_RS17735	COG0330	HflC and HflK could
CJD41_RS17740	COG1585	Membrane protein implicated in regulation of membrane protease activity
CJD41_RS17750	COG2217	Heavy metal translocating P-type atpase
CJD41_RS17760	COG3735	TraB family
CJD41_RS17775	COG2223	nitrite transmembrane transporter activity
CJD41_RS17780	COG4651	solute:proton antiporter activity
CJD41_RS17780	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CJD41_RS17785	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJD41_RS17835	COG2832	Protein of unknown function (DUF454)
CJD41_RS17840	COG3923	Primosomal replication protein n
CJD41_RS17850	COG5464	transposase or invertase
CJD41_RS17855	COG1196	nuclear chromosome segregation
CJD41_RS17855	COG3264	Mechanosensitive ion channel
CJD41_RS17860	COG1309	transcriptional regulator
CJD41_RS17865	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJD41_RS17870	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CJD41_RS17885	COG0110	maltose O-acetyltransferase activity
CJD41_RS17905	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CJD41_RS17915	COG3695	enzyme binding
CJD41_RS17920	COG3126	Type III secretion system lipoprotein chaperone (YscW)
CJD41_RS17925	COG1946	Acyl-CoA thioesterase
CJD41_RS17930	COG0004	ammonium transporteR
CJD41_RS17935	COG0347	Belongs to the P(II) protein family
CJD41_RS17940	COG1132	(ABC) transporter
CJD41_RS17945	COG1132	(ABC) transporter
CJD41_RS17950	COG1522	sequence-specific DNA binding
CJD41_RS17965	COG4533	DNA binding
CJD41_RS17975	COG0824	Thioesterase
CJD41_RS17980	COG1555	photosystem II stabilization
CJD41_RS17985	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJD41_RS17995	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CJD41_RS18025	COG0271	Belongs to the BolA IbaG family
CJD41_RS18035	COG3056	Lipoprotein
CJD41_RS18040	COG2223	nitrite transmembrane transporter activity
CJD41_RS18045	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CJD41_RS18050	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CJD41_RS18055	COG1845	cytochrome c oxidase, subunit III
CJD41_RS18060	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CJD41_RS18080	COG2814	Major facilitator Superfamily
CJD41_RS18110	COG2188	Transcriptional regulator
CJD41_RS18145	COG0142	geranyltranstransferase activity
CJD41_RS18155	COG0667	Aldo Keto reductase
CJD41_RS18160	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CJD41_RS18165	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CJD41_RS18180	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJD41_RS18180	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJD41_RS18190	COG4238	major outer membrane lipoprotein
CJD41_RS18225	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CJD41_RS18235	COG1862	Preprotein translocase
CJD41_RS18255	COG0450	alkyl hydroperoxide reductase
CJD41_RS18260	COG0366	Alpha amylase catalytic
CJD41_RS18275	COG5002	protein histidine kinase activity
CJD41_RS18285	COG0420	3'-5' exonuclease activity
CJD41_RS18290	COG0419	ATPase involved in DNA repair
CJD41_RS18295	COG2814	Major facilitator Superfamily
CJD41_RS18300	COG1940	carbohydrate kinase activity
CJD41_RS18315	COG4126	flavin adenine dinucleotide binding
CJD41_RS18335	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CJD41_RS18385	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CJD41_RS18395	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CJD41_RS18410	COG0113	porphobilinogen synthase activity
CJD41_RS18420	COG2079	MmgE PrpD family protein
CJD41_RS18445	COG1280	lysine exporter protein (LysE YggA)
CJD41_RS18465	COG1294	oxidase, subunit
CJD41_RS18470	COG1271	oxidase subunit
CJD41_RS18490	COG2814	Major facilitator Superfamily
CJD41_RS18500	COG0789	Transcriptional regulator
CJD41_RS18505	COG2217	Heavy metal translocating P-type atpase
CJD41_RS18510	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJD41_RS18555	COG2200	EAL domain
CJD41_RS18580	COG3539	Fimbrial protein
CJD41_RS18585	COG3121	Chaperone
CJD41_RS18625	COG0179	Fumarylacetoacetate (FAA) hydrolase
CJD41_RS18640	COG2814	Major facilitator Superfamily
CJD41_RS18665	COG0582	viral genome integration into host DNA
CJD41_RS18675	COG2246	polysaccharide biosynthetic process
CJD41_RS18680	COG0463	Glycosyl transferase, family 2
CJD41_RS18800	COG3772	lysozyme
CJD41_RS18815	COG0484	heat shock protein binding
CJD41_RS18870	COG0305	Participates in initiation and elongation during chromosome replication
CJD41_RS18945	COG4712	double-strand break repair protein
CJD41_RS18995	COG0582	viral genome integration into host DNA
CJD41_RS19035	COG2195	Cleaves the N-terminal amino acid of tripeptides
CJD41_RS19040	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CJD41_RS19045	COG1690	Belongs to the RtcB family
CJD41_RS19055	COG3034	peptidoglycan biosynthetic process
CJD41_RS19060	COG0121	glutamine amidotransferase
CJD41_RS19075	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CJD41_RS19240	COG3596	GTP binding
CJD41_RS19250	COG2378	regulation of single-species biofilm formation
CJD41_RS19260	COG2378	regulation of single-species biofilm formation
CJD41_RS19305	COG2003	Belongs to the UPF0758 family
CJD41_RS19370	COG2226	methyltransferase
CJD41_RS19380	COG1388	LysM domain
CJD41_RS19380	COG0741	lytic transglycosylase activity
CJD41_RS19385	COG2226	methyltransferase
CJD41_RS19395	COG2814	Major facilitator Superfamily
CJD41_RS19400	COG0583	DNA-binding transcription factor activity
CJD41_RS19435	COG0542	response to heat
CJD41_RS19450	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CJD41_RS19455	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CJD41_RS19465	COG0077	Prephenate dehydratase
CJD41_RS19465	COG1605	Chorismate mutase
CJD41_RS19475	COG1605	Chorismate mutase
CJD41_RS19475	COG0287	Prephenate dehydrogenase
CJD41_RS19490	COG2199	diguanylate cyclase activity
CJD41_RS19515	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CJD41_RS19525	COG4137	Cytochrome C assembly protein
CJD41_RS19530	COG4536	flavin adenine dinucleotide binding
CJD41_RS19555	COG0497	DNA recombination
CJD41_RS19570	COG2867	negative regulation of translational initiation
CJD41_RS19595	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJD41_RS19665	COG2819	hydrolase of the alpha beta superfamily
CJD41_RS19695	COG2990	Protein conserved in bacteria
CJD41_RS19710	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
CJD41_RS19750	COG1012	belongs to the aldehyde dehydrogenase family
CJD41_RS19760	COG1113	amino acid transport
CJD41_RS19765	COG1802	Transcriptional regulator
CJD41_RS19770	COG1652	LysM domain
CJD41_RS19780	COG0401	homolog of Blt101
CJD41_RS19785	COG0640	Transcriptional regulator
CJD41_RS19790	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CJD41_RS19830	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CJD41_RS19880	COG2814	Major facilitator Superfamily
CJD41_RS19885	COG1846	Transcriptional regulator
CJD41_RS19890	COG1566	PFAM secretion protein HlyD family protein
CJD41_RS19915	COG1238	metal cluster binding
CJD41_RS19920	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CJD41_RS19945	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CJD41_RS19970	COG1546	Belongs to the CinA family
CJD41_RS19980	COG2951	lytic endotransglycosylase activity
CJD41_RS19985	COG3730	PTS system glucitol sorbitol-specific
CJD41_RS19990	COG3732	PTS system glucitol sorbitol-specific
CJD41_RS20000	COG1028	Short-chain dehydrogenase reductase Sdr
CJD41_RS20005	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS20010	COG1349	DNA-binding transcription factor activity
CJD41_RS20015	COG0517	IMP dehydrogenase activity
CJD41_RS20015	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CJD41_RS20035	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CJD41_RS20040	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJD41_RS20050	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CJD41_RS20060	COG3260	NADH ubiquinone oxidoreductase 20
CJD41_RS20065	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJD41_RS20070	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
CJD41_RS20070	COG3261	NADH dehydrogenase
CJD41_RS20075	COG0650	Formate hydrogenlyase subunit 4
CJD41_RS20080	COG0651	ATP synthesis coupled electron transport
CJD41_RS20085	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJD41_RS20105	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CJD41_RS20110	COG0298	carbon dioxide binding
CJD41_RS20115	COG0409	Hydrogenase expression formation protein
CJD41_RS20120	COG0309	Hydrogenase expression formation protein (HypE)
CJD41_RS20140	COG1121	(ABC) transporter
CJD41_RS20145	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CJD41_RS20150	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CJD41_RS20235	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CJD41_RS20325	COG2207	Transcriptional regulator
CJD41_RS20390	COG0477	Major facilitator Superfamily
CJD41_RS20400	COG2610	gluconate transmembrane transporter activity
CJD41_RS20405	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJD41_RS20410	COG3622	Belongs to the hyi family
CJD41_RS20415	COG0235	Class ii aldolase
CJD41_RS20425	COG2084	Dehydrogenase
CJD41_RS20430	COG1349	DNA-binding transcription factor activity
CJD41_RS20440	COG0163	prenyltransferase activity
CJD41_RS20445	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CJD41_RS20515	COG2234	aminopeptidase activity
CJD41_RS20520	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CJD41_RS20525	COG1518	maintenance of DNA repeat elements
CJD41_RS20540	COG1857	crispr-associated protein
CJD41_RS20555	COG1203	CRISPR-associated helicase, Cas3
CJD41_RS20595	COG0720	synthase
CJD41_RS20600	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CJD41_RS20600	COG0321	lipoyl(octanoyl) transferase activity
CJD41_RS20605	COG0602	queuosine metabolic process
CJD41_RS20620	COG3956	TIGRFAM MazG family protein
CJD41_RS20625	COG3539	Fimbrial protein
CJD41_RS20635	COG3121	Chaperone
CJD41_RS20640	COG3539	Fimbrial protein
CJD41_RS20660	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CJD41_RS20670	COG3437	response regulator, receiver
CJD41_RS20670	COG2205	protein histidine kinase activity
CJD41_RS20670	COG3850	Histidine kinase
CJD41_RS20670	COG4999	Histidine kinase
CJD41_RS20675	COG1929	Belongs to the glycerate kinase type-1 family
CJD41_RS20680	COG4948	Mandelate Racemase Muconate Lactonizing
CJD41_RS20690	COG2271	Major facilitator Superfamily
CJD41_RS20700	COG0716	FMN binding
CJD41_RS20710	COG3098	single-species biofilm formation
CJD41_RS20730	COG1611	Belongs to the LOG family
CJD41_RS20735	COG0814	amino acid
CJD41_RS20740	COG1760	l-serine dehydratase
CJD41_RS20755	COG1454	alcohol dehydrogenase
CJD41_RS20760	COG0235	Class ii aldolase
CJD41_RS20765	COG0738	Major facilitator superfamily
CJD41_RS20785	COG1349	DNA-binding transcription factor activity
CJD41_RS20795	COG2363	Small membrane protein
CJD41_RS20800	COG0583	DNA-binding transcription factor activity
CJD41_RS20810	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CJD41_RS20815	COG2166	iron-sulfur cluster assembly
CJD41_RS20820	COG2962	Rard protein
CJD41_RS20825	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CJD41_RS20830	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
CJD41_RS20845	COG0860	N-Acetylmuramoyl-L-alanine amidase
CJD41_RS20855	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CJD41_RS20860	COG1074	ATP-dependent DNA helicase activity
CJD41_RS20865	COG1025	Belongs to the peptidase M16 family
CJD41_RS20870	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
CJD41_RS20875	COG4967	type IV pilus modification protein PilV
CJD41_RS20885	COG4795	General secretion pathway protein
CJD41_RS20890	COG2165	general secretion pathway protein
CJD41_RS20925	COG0861	Integral membrane protein TerC family
CJD41_RS20935	COG0667	Aldo Keto reductase
CJD41_RS20965	COG1609	Transcriptional regulator
CJD41_RS20975	COG0583	DNA-binding transcription factor activity
CJD41_RS20980	COG1794	racemase activity, acting on amino acids and derivatives
CJD41_RS20985	COG2814	Major facilitator Superfamily
CJD41_RS20990	COG1028	Short-chain dehydrogenase reductase Sdr
CJD41_RS21005	COG0183	Belongs to the thiolase family
CJD41_RS21020	COG0814	amino acid
CJD41_RS21055	COG3188	usher protein
CJD41_RS21105	COG4942	peptidase
CJD41_RS21175	COG1272	protein, Hemolysin III
CJD41_RS21185	COG2723	6-phospho-beta-galactosidase activity
CJD41_RS21215	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CJD41_RS21220	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CJD41_RS21225	COG0006	proline dipeptidase activity
CJD41_RS21245	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CJD41_RS21250	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CJD41_RS21270	COG2968	Membrane
CJD41_RS21280	COG0668	transmembrane transport
CJD41_RS21285	COG0191	fructose-bisphosphate aldolase activity
CJD41_RS21320	COG1122	ATPase activity
CJD41_RS21325	COG1122	ATPase activity
CJD41_RS21330	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CJD41_RS21335	COG0501	Belongs to the peptidase M48B family
CJD41_RS21345	COG2267	carboxylic ester hydrolase activity
CJD41_RS21350	COG2731	YhcH YjgK YiaL family protein
CJD41_RS21355	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
CJD41_RS21360	COG1063	alcohol dehydrogenase
CJD41_RS21365	COG0246	Mannitol dehydrogenase
CJD41_RS21375	COG2186	Transcriptional regulator
CJD41_RS21385	COG1166	arginine decarboxylase activity
CJD41_RS21410	COG2814	Major facilitator Superfamily
CJD41_RS21420	COG2356	endonuclease I
CJD41_RS21425	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CJD41_RS21450	COG2805	Type II/IV secretion system protein
CJD41_RS21455	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CJD41_RS21460	COG0762	integral membrane protein
CJD41_RS21475	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJD41_RS21485	COG0252	asparaginase activity
CJD41_RS21495	COG3171	Protein conserved in bacteria
CJD41_RS21520	COG2211	Major facilitator Superfamily
CJD41_RS21530	COG1811	Na channel or pump
CJD41_RS21545	COG0427	acetyl-CoA hydrolase
CJD41_RS21550	COG2030	dehydratase
CJD41_RS21555	COG2301	Belongs to the HpcH HpaI aldolase family
CJD41_RS21585	COG0531	amino acid
CJD41_RS21595	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJD41_RS21600	COG1012	belongs to the aldehyde dehydrogenase family
CJD41_RS21625	COG2271	Major facilitator Superfamily
CJD41_RS21635	COG0246	Mannitol dehydrogenase
CJD41_RS21655	COG0754	glutathionylspermidine amidase activity
CJD41_RS21670	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CJD41_RS21675	COG0298	carbon dioxide binding
CJD41_RS21685	COG1773	rubredoxin
CJD41_RS21690	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CJD41_RS21695	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CJD41_RS21700	COG5557	Pfam Polysulphide reductase, NrfD
CJD41_RS21705	COG0437	4 iron, 4 sulfur cluster binding
CJD41_RS21710	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CJD41_RS21725	COG0840	transmembrane signaling receptor activity
CJD41_RS21750	COG1028	Short-chain dehydrogenase reductase Sdr
CJD41_RS21755	COG0848	biopolymer transport protein
CJD41_RS21780	COG2207	Transcriptional regulator
CJD41_RS21785	COG1979	alcohol dehydrogenase
CJD41_RS21845	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
CJD41_RS21850	COG3111	PFAM Bacterial OB fold (BOF) protein
CJD41_RS21865	COG2249	NAD(P)H dehydrogenase (quinone) activity
CJD41_RS21870	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CJD41_RS21880	COG3150	esterase
CJD41_RS21885	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CJD41_RS21890	COG3151	Protein conserved in bacteria
CJD41_RS21895	COG0494	nUDIX hydrolase
CJD41_RS21915	COG0754	glutathionylspermidine amidase activity
CJD41_RS21920	COG3384	dioxygenase
CJD41_RS21965	COG1585	Membrane protein implicated in regulation of membrane protease activity
CJD41_RS21970	COG2268	Band 7 protein
CJD41_RS21990	COG3025	triphosphatase activity
CJD41_RS22000	COG4991	sh3 domain protein
CJD41_RS22015	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CJD41_RS22025	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CJD41_RS22035	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CJD41_RS22060	COG2375	cellular response to nickel ion
CJD41_RS22065	COG1695	Transcriptional regulator
CJD41_RS22070	COG0840	transmembrane signaling receptor activity
CJD41_RS22075	COG0840	transmembrane signaling receptor activity
CJD41_RS22085	COG1902	pentaerythritol trinitrate reductase activity
CJD41_RS22085	COG0446	pyridine nucleotide-disulphide oxidoreductase
CJD41_RS22095	COG1451	nucleotide metabolic process
CJD41_RS22100	COG2949	membrane
CJD41_RS22125	COG0586	Pfam SNARE associated Golgi protein
CJD41_RS22135	COG1422	Protein of unknown function (DUF1090)
CJD41_RS22140	COG4575	ribosome binding
CJD41_RS22145	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
CJD41_RS22160	COG0435	Glutathione S-transferase
CJD41_RS22165	COG3152	Membrane
CJD41_RS22170	COG0583	DNA-binding transcription factor activity
CJD41_RS22175	COG1741	Belongs to the pirin family
CJD41_RS22200	COG1882	Formate acetyltransferase
CJD41_RS22220	COG0583	DNA-binding transcription factor activity
CJD41_RS22240	COG1929	Belongs to the glycerate kinase type-1 family
CJD41_RS22245	COG2084	Dehydrogenase
CJD41_RS22255	COG2721	sulfolactate sulfo-lyase activity
CJD41_RS22270	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS22275	COG3414	Phosphotransferase system galactitol-specific IIB component
CJD41_RS22280	COG3775	system Galactitol-specific IIC component
CJD41_RS22285	COG1063	alcohol dehydrogenase
CJD41_RS22295	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CJD41_RS22300	COG3107	peptidoglycan biosynthetic process
CJD41_RS22315	COG2823	Periplasmic or secreted lipoprotein
CJD41_RS22320	COG0702	epimerase
CJD41_RS22325	COG0693	protein deglycase activity
CJD41_RS22340	COG3153	acetyltransferase
CJD41_RS22345	COG3154	lipid carrier protein
CJD41_RS22350	COG0826	peptidase U32
CJD41_RS22355	COG0826	peptidase U32
CJD41_RS22360	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CJD41_RS22365	COG3034	peptidoglycan biosynthetic process
CJD41_RS22375	COG0814	amino acid
CJD41_RS22380	COG0513	Belongs to the DEAD box helicase family
CJD41_RS22445	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CJD41_RS22455	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CJD41_RS22475	COG1534	Rna-binding protein
CJD41_RS22485	COG2027	D-alanyl-D-alanine carboxypeptidase
CJD41_RS22495	COG0697	spore germination
CJD41_RS22510	COG0142	geranyltranstransferase activity
CJD41_RS22515	COG3423	Transcriptional regulator
CJD41_RS22525	COG5007	Belongs to the BolA IbaG family
CJD41_RS22530	COG3113	response to antibiotic
CJD41_RS22535	COG2854	intermembrane phospholipid transfer
CJD41_RS22540	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CJD41_RS22545	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CJD41_RS22550	COG1127	ABC transporter
CJD41_RS22555	COG0530	calcium, potassium:sodium antiporter activity
CJD41_RS22565	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CJD41_RS22570	COG3117	lipopolysaccharide transmembrane transporter activity
CJD41_RS22575	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CJD41_RS22580	COG1137	ATPase activity
CJD41_RS22605	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJD41_RS22615	COG0515	serine threonine protein kinase
CJD41_RS22625	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
CJD41_RS22630	COG0784	Response regulator, receiver
CJD41_RS22630	COG2198	Histidine kinase
CJD41_RS22630	COG5002	protein histidine kinase activity
CJD41_RS22635	COG1242	4 iron, 4 sulfur cluster binding
CJD41_RS22640	COG0070	glutamate synthase
CJD41_RS22640	COG0067	glutamate synthase
CJD41_RS22640	COG0069	glutamate synthase activity
CJD41_RS22645	COG0493	'glutamate synthase
CJD41_RS22655	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CJD41_RS22660	COG0402	S-adenosylhomocysteine deaminase activity
CJD41_RS22665	COG2731	YhcH YjgK YiaL family protein
CJD41_RS22695	COG2969	positive regulation of protein catabolic process
CJD41_RS22700	COG0625	glutathione transferase activity
CJD41_RS22725	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CJD41_RS22730	COG3105	Protein conserved in bacteria
CJD41_RS22735	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJD41_RS22750	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
CJD41_RS22765	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CJD41_RS22770	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CJD41_RS22775	COG0471	metal ion transport
CJD41_RS22785	COG2188	Transcriptional regulator
CJD41_RS22810	COG2732	(Barnase) inhibitor
CJD41_RS22830	COG0583	DNA-binding transcription factor activity
CJD41_RS22835	COG0312	modulator of DNA gyrase
CJD41_RS22840	COG3164	Protein of unknown function
CJD41_RS22855	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CJD41_RS22860	COG1792	Involved in formation and maintenance of cell shape
CJD41_RS22865	COG1077	Cell shape determining protein MreB Mrl
CJD41_RS22875	COG2200	EAL domain
CJD41_RS22875	COG2199	diguanylate cyclase activity
CJD41_RS22880	COG0604	alcohol dehydrogenase
CJD41_RS22895	COG0511	ligase activity, forming carbon-carbon bonds
CJD41_RS22900	COG0439	Biotin carboxylase
CJD41_RS22905	COG3924	membrane
CJD41_RS22910	COG4145	pantothenate transmembrane transporter activity
CJD41_RS22930	COG2189	Belongs to the N(4) N(6)-methyltransferase family
CJD41_RS22945	COG1309	transcriptional regulator
CJD41_RS22950	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJD41_RS22955	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CJD41_RS23065	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CJD41_RS23070	COG2104	thiamine diphosphate biosynthetic process
CJD41_RS23150	COG0250	Participates in transcription elongation, termination and antitermination
CJD41_RS23240	COG1739	Uncharacterized protein family UPF0029
CJD41_RS23270	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CJD41_RS23285	COG0805	protein transport
CJD41_RS23330	COG0641	radical SAM
CJD41_RS23350	COG0561	phosphatase activity
CJD41_RS23355	COG2267	carboxylic ester hydrolase activity
CJD41_RS23415	COG1011	Hydrolase
CJD41_RS23475	COG2959	enzyme of heme biosynthesis
CJD41_RS23480	COG3071	HemY protein
CJD41_RS23525	COG2244	polysaccharide biosynthetic process
CJD41_RS23530	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJD41_RS23535	COG0456	acetyltransferase
CJD41_RS23540	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CJD41_RS23540	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CJD41_RS23545	COG1088	dTDP-glucose 4,6-dehydratase activity
CJD41_RS23550	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CJD41_RS23580	COG3118	belongs to the thioredoxin family
CJD41_RS23600	COG3201	nicotinamide mononucleotide transporter
CJD41_RS23650	COG3978	acetolactate synthase activity
CJD41_RS23715	COG2186	Transcriptional regulator
CJD41_RS23720	COG0477	Major facilitator Superfamily
CJD41_RS23730	COG1609	Transcriptional regulator
CJD41_RS23735	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJD41_RS23745	COG1172	Belongs to the binding-protein-dependent transport system permease family
CJD41_RS23780	COG1522	sequence-specific DNA binding
CJD41_RS23785	COG0716	FMN binding
CJD41_RS23870	COG4533	DNA binding
CJD41_RS23875	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CJD41_RS23880	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CJD41_RS23880	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CJD41_RS23880	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CJD41_RS23885	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CJD41_RS23890	COG0573	inorganic phosphate transmembrane transporter activity
CJD41_RS23895	COG0581	inorganic phosphate transmembrane transporter activity
CJD41_RS23905	COG0704	Plays a role in the regulation of phosphate uptake
CJD41_RS23910	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CJD41_RS23920	COG0431	NADPH-dependent FMN reductase
CJD41_RS23925	COG2091	lysine biosynthetic process via aminoadipic acid
CJD41_RS24000	COG0431	NADPH-dependent FMN reductase
CJD41_RS24030	COG1192	Involved in chromosome partitioning
CJD41_RS24060	COG0798	PFAM Bile acid sodium symporter
CJD41_RS24100	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CJD41_RS24150	COG2026	Addiction module toxin, RelE StbE family
CJD41_RS24205	COG0250	Participates in transcription elongation, termination and antitermination
CJD41_RS24255	COG2948	multi-organism process
CJD41_RS24305	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CJD41_RS24365	COG0840	transmembrane signaling receptor activity
CJD41_RS24460	COG1388	LysM domain
CJD41_RS24460	COG2373	Large extracellular alpha-helical protein
CJD41_RS24460	COG4932	domain protein
CJD41_RS24640	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities