        recF NONE
        gyrB    6178 ..    6213 + -12.6  -2.80074   ATATTTAACCTGCCT    TAAT-CCCCGGCCTACC GCT GGTTGGCCGGGGCATCA    TGATGTTCTCCGACA  82 33
        yidA   10858 ..   10874 +  -9.4  -5.82281   ATACGCGCTTAACGA              CCCGCA CTTGC TGCGGG              TTTTTTTATGTCTTT 100 62
        dgoR NONE
CCO40_RS00050 NONE
CCO40_RS00055 NONE
        dgoD   14427 ..   14437 +  -2.4  -2.82327   ACAAACGTCGCCCTC                 CGGG CAA CCCA                 ATTTAAATATAAAAA  40 60
CCO40_RS00065   15956 ..   15988 +  -6.1  -5.04601   CCCGACAGGCTTCGG      TTGCCTGCGTCATCC CCA GGCTGGCGCAGCCGC      TTTTTAATTTATGCG  84 167
        torT   19900 ..   19923 +  -3.9  -3.18681   GTAAGCTTAATGGCT          TCAC-CGTTG TGCTC CAGCGTGTGA          TTCATCACGTTCAGG  47 230
        torC NONE
        torA NONE
        torD   24937 ..   24947 +  -3.2  -4.39414   TGATACCAATCAATA                 TCCA TGA TGGG                 TTTGTATTTAGTATT  62 121
CCO40_RS00100 NONE
        ccmA   27030 ..   27049 +  -6.3  -2.86177   CCGCCGCCTGGCGCT            GACCGGC GGGGGG GCCGGGC             TGTGATGTGGCGTGT  55 1
        ccmB   27703 ..   27729 +  -2.9  -4.61566   CGCTGCGCCTCAGCG        TG-CAGTAGCGC CCCG GCGCGACGGACA         TTTTATGGTTTCAGG  65 18
CCO40_RS00115   28492 ..   28504 +  -6.2  -2.50493   ACTGAAAAGGGGGCA                CCGG TGAGT CCGG                CATTTTCATCGTGGA  53 19
        ccmD NONE
        ccmE NONE
CCO40_RS00130 NONE
        dsbE NONE
CCO40_RS00140   32797 ..   32809 +  -7.7  -3.21593   CGTGTGCAGTATGAT                GACGA GCA TCGTC                TCTTATCAGGACATC  64 117
CCO40_RS00145   34120 ..   34132 +  -3.3  -3.02829   TCTCCTCCTCGCTTT                TCTCG ACG CGCGA                TCTTACCGAACTGTC  43 92
        ibpA   35119 ..   35135 + -11.5  -2.80113   TAACTGATTCCGTCG              GGTCGCG TTG CGCGGCC              TGTCATCCCATGCTC  77 34
        ibpB   35664 ..   35685 + -17.3  -5.24129   TGAGCTCCTTGCCTT           GCCCCGCCA GAGA TGGCGGGGC            TTTTTTGTGCCACGA 100 41
CCO40_RS00165   37498 ..   37511 +  -9.5  -2.66274   TTGGGGAATGGGTTA               GCGCC TGAT GGCGC                GTTGCTTATCCGGCC  68 25
CCO40_RS00170 NONE
CCO40_RS00175 NONE
CCO40_RS00180   39213 ..   39227 +  -5.6  -3.35046   CAGGCGATGGCGTGC               CGGATG GAG CAGCCG               TCTTTCCGGCACTGA  56 70
        dsdC NONE
CCO40_RS00200   44715 ..   44732 +  -5.5  -4.42386   GGTAACAGTTAAATG             CGCCGTT GCCA AACAGCG              TTTTATAGCTGGCGA  70 515
        ivbL   47340 ..   47364 + -10.7  -5.63517   CACACGATTCCAAAA         CCCCGC-CGG CGCAAA CCGGGCGGGG          TTTTTTGTTTAAGAC 100 52
        ilvB NONE
        ilvN   49645 ..   49675 +  -5.4  -2.73159   CAGCTCACGCCAAAA       TGTTCATGTACGCC GCT GGCGGAAATAAACA       CTTTGCGCGGATTGA  47 268
        rbsK NONE
        fucP NONE
CCO40_RS00255   53818 ..   53842 + -12.2  -5.96219   AGGCTTGAACAGCCG          CGCGCTTATC GTTAA GGTAAGCGCG          TTTTTTTTATCCATC 100 48
        uhpA NONE
        uhpB   55940 ..   55952 +  -5.5  -3.27525   CGCGGGTGAGCGTCT                CGTTG CCC CAGCG                TTACGTTTAAGGAAG  54 3
CCO40_RS00270   57355 ..   57376 +  -5.1  -2.52138   AAATTTTCCCGGTTT           TGCCTG-GAC GCT GTCGCAGGCC           CCTTTTCCTGTGGAT  48 80
        uhpT   58858 ..   58876 + -13.1  -5.31456   ATTTGGTAACGTTTT             GCCCGGC TTAAC GCCGGGC             TTTTTTATGCCTTGC 100 49
CCO40_RS00280   59680 ..   59707 + -12.9  -2.94356   AGACTTATAGCTCAT        CATTTCCGTGA CATATA TCACGGAAATG         TGATCTTGTTTTGAA  86 226
CCO40_RS00285 NONE
CCO40_RS00290 NONE
CCO40_RS00295   61337 ..   61349 +  -3.3   -2.8552   TAGTTTCAATCCTTA                AAGGC CAA GCCTG                ATTTCATAAATAAAA  44 12
CCO40_RS00300 NONE
CCO40_RS00305 NONE
CCO40_RS00310 NONE
CCO40_RS00315   65839 ..   65859 +  -9.1  -4.35327   CGCGCTATGAATCGC            TTCAAAGGC AGG GCTTTTGAA            TTTAGTTTTTGCTGA  84 401
        nepI   67717 ..   67735 +    -3  -5.42259   TTATGCTCTGCGGTG             GCGGCAAA CCA TTCTCCGC             TTTTTTTCACCGTGC  84 113
        dagR   72473 ..   72499 + -11.5   -2.5638   ATAGTTAATCCTTTT         ACTGGCGGGGC TTCGC GCCTCGCCAGA         CCTTTCTTCTTCCTC  77 33
CCO40_RS00350 NONE
CCO40_RS00355 NONE
CCO40_RS00360 NONE
CCO40_RS00365 NONE
        dgaE NONE
CCO40_RS00375   77337 ..   77360 +  -8.8  -2.78049   CAGCCGTCAGTGATT          CCCTTTCGAG CCTC CTCGCAGGGG           TAAATTTTCCTGAAT  64 162
CCO40_RS00380   78687 ..   78697 +  -6.8  -3.62054   CAGGCTGCCGCTCAC                 CGCA AAG TGCG                 TTCCTTCTTTAGCGT  62 335
CCO40_RS00390 NONE
        mgtA NONE
        mgtR NONE
        mgtU   83740 ..   83752 +  -5.5  -4.33274   TAGTTGTTCTTTTTA                TGGCG GGG CGCTA                TTTTCATGGTATCCC  70 80
        cigR   84452 ..   84472 + -14.1  -3.66803   AAATGGCAAGTAAAA            TAGCCCCAT TAA ATGGGGCTA            TTTAGCCTCTTCAGG 100 211
CCO40_RS00420 NONE
CCO40_RS00425   87351 ..   87369 + -14.6  -3.27902   CGTTTCCGGGTAAAA             GCCGCTGA AGA TCAGCGGC             TCTGTTGTTACCTGA 100 85
CCO40_RS00465   96435 ..   96469 +    -5  -3.39862   CCGGAGACGACGATC    TTC-CGCGCCTCGAT TGCTAC ATGGAGGCGCGCGCA     TTATAGCTACTTCCT  53 433
CCO40_RS00475 NONE
        yicI  100456 ..  100471 +    -6  -3.30124   CTGAATCGCCGGATG              GCGCCG TGAG CTGCGC               TTATCCGGCCTACAA  59 43
        gltS NONE
CCO40_RS00500  106315 ..  106336 +  -5.8  -3.85698   CCTGTAAACGCTTCT           GCGCCGTT TTCGAC AACGGCGA            TTTATAGAGCAGCAC  63 291
        ligB  114137 ..  114151 +  -5.6  -2.87211   GATAATTGGCCCTTC               GCCCAT ATC AAGGGC               TATCTGAGCGCCAAT  49 304
CCO40_RS00545  116770 ..  116788 +  -2.4  -5.45652   GCATCATGAAGTCCA            GACGGCG ACCTAC CGCC-TC             TTTTTTCTTCAGAAT  85 215
         rph  118342 ..  118359 + -11.3  -5.96219   GAAAATTGATTTTAA             GGCGACT GAAA AGTCGCC              TTTTTTTTGTCCGTA 100 32
        pyrE  119454 ..  119481 +    -4  -5.69023   ACCCAGAATCAGCAA        CACAATCAGGCG CAAA CGCGTGCTGGTG         TTTTTTTCATCTTTT  91 424
        radC  122347 ..  122360 +  -6.7   -4.2074   TAAGATTCTTTGCGC               GATCC ATCG GGATC                TTTGTCTGTTCGGGA  72 38
        rpmB NONE
        rpmG  123000 ..  123015 +  -8.2  -5.86976   TTGATGTAACAAAAA              CCTCGC TTCG GCGGGG               TTTTTTGTTTTCTGG 100 49
        mutM  124235 ..  124261 +  -3.6   -4.2461   TTTTTGCGCCAGCGC         CACACGTTCGTC CAG GGTGAACATGGG         TTTCTTGCTGGGGCT  64 377
        rfaQ NONE
CCO40_RS00615 NONE
        rfaP  129076 ..  129094 +  -2.4  -3.91897   CTGTAATTATAATAA             TTATGCAC TCA GTGAGTAA             TTTATGAGTGAGACA  53 35
CCO40_RS00625  129369 ..  129381 +  -2.7  -4.23758   TTTAATATCTAAAGT                CTTTA GAT TAAGG                TTTTAACTCTGGGGT  58 63
        waaB NONE
        waaO NONE
        rfaJ NONE
        rfaY  133344 ..  133358 +  -2.9  -3.34369   TGAGATGTAATATTA               GTTAT TGAAT ATAAC               ATTTATTTATAGGTT  46 121
        waaZ  134307 ..  134325 +  -4.7  -3.95424   CTGGATTATAGCTAT             TATGATT AAAAA AATCATA             TTTACTGTTACTCCT  59 125
CCO40_RS00655  135475 ..  135504 + -13.7  -5.82281   CCTGATGATGGAAAA       CGCGCTGATAC CGTAATAA GTATCAGCGCG        TTTTTTTATCTATTT 100 47
         kbl NONE
         tdh  142388 ..  142408 +    -9   -5.4505   CGTTTCATCGTAAAA            GGTTGGTG TCATT CGCCAACC            TTTTTTGTTAGGGAA 100 281
CCO40_RS00690  143781 ..  143793 +  -3.3  -5.09426   AGCGCGTAGCGTAGA                CCGGT TGC AGCGG                TTTTTTCGGCTTGCA  76 146
CCO40_RS00710  148118 ..  148136 +  -3.9  -3.13772   AATCTGCCTCTGGTG            CGCGGTAA GTGA TTACC-CG             TCGTTTTCATGACGT  48 14
        grxC NONE
        secB NONE
        gpsA  150020 ..  150049 + -10.1  -4.39426   AACTGTTTGCATAAA       CGACCCAACCCG CACAGAA CGGGTTGG-TCG       TTTTCTGCCCGTCTG  87 49
        cysE  151353 ..  151376 +    -3   -3.6502   AACAGGCAGTTTCCG          CGCGACGGTA AGGC TATAGCCGCG           TTTGAGTAGCCAGTC  51 483
CCO40_RS00745  155167 ..  155180 +  -5.9  -3.96148   AGCTTACGGCGCTAT               GGGCG GGCG TGCCC                TTTGTCGTCAACGCA  65 311
CCO40_RS00785  166246 ..  166256 +  -4.6  -3.34398   CCACAGCGTATTTCA                 CGGC ATA GTCG                 TCTTTGCGAAACACC  51 409
CCO40_RS00805 NONE
CCO40_RS00810  171835 ..  171862 + -12.7   -5.4505   CCTGAGCCATACTAA        GCGGTGCCCCA CTATCA TTGGGCACCGC         TTTTTTGTTGGCAAA 100 69
CCO40_RS00815 NONE
        selA NONE
        selB  175861 ..  175881 +  -4.7  -5.69262   TAAATAACAAATGAA            GCAATACAA TTA TTGCGTTGC            TTTTTATTTTTCTGG 100 52
        aldB  179143 ..  179157 +  -4.2  -4.00526   ACAACGCCTGATGCT               GCGC ATCTGGG GCGC               TTTGCTTCTCGCCTT  60 498
CCO40_RS00845  182089 ..  182100 +  -2.2  -4.00868   GGTTGCAAACTGAAT                GC-CC GAT GGCGC                TTTGCTTATCGGTCC  55 68
        yiaJ  192273 ..  192294 +  -4.5  -4.02534   AGACAGCTCGCCAGG           TTTTATCAG GCAT CTGACAAAA            TTTGTCCGTTTGCGT  61 40
CCO40_RS00905  192915 ..  192925 +    -4  -4.56775   GGCGCGTTCAATCTC                 TTCT GCC AGAA                 TTTTTACGCCCGCCT  69 92
CCO40_RS00920  197789 ..  197806 +  -5.5  -3.76492   TGAAATCCCAACCGC             GTCCAGC ACCT GCTCGAC              TTTAATGCCCTTACA  58 338
        xylA  200449 ..  200476 +  -9.8  -2.78679   CCTGTAGTCGTGATT        AGCCCGGTAAGCG TAG CGCT-GCCGGGCG        CTTTCAGTAAAGGAA  69 74
        xylB  201962 ..  201987 + -12.7  -3.61922   TGTCATAAGTCAGAA         TGCCTTTCAGT TTTG GCTGAAAGGCA          TTTCCCGTAAATATT  95 33
CCO40_RS00940  202480 ..  202497 +  -9.9  -3.61609   TACAGTGATGATGAA             TGATGGC CGGA GCCATCA              TTGTCGTTTAGCTAA  77 23
CCO40_RS00950  203992 ..  204008 +  -5.1  -3.10597   CCTGGTGAGGTGTGA              TGCCG CGAAATC CGGCA              ATTTTCGCTAAACAA  51 49
        glyQ NONE
        glyS  207121 ..  207136 +  -6.8    -5.626   TTAAATAAACAAAAA              CCTGCT CTCG GGCAGG               TTTTTTTATAACATA 100 49
CCO40_RS00970  208184 ..  208230 +  -2.4  -3.65522   GATGAGGAAATGTTT GGCGAAATAATAGT-CAGCCT GCAGAA AGGCAGCATTGTTCTTTTGCC TTGTTGAACTCAGTA  49 16
CCO40_RS00975 NONE
CCO40_RS00980  209469 ..  209497 +  -8.9  -5.44721   TGTTGGCGTTTTATA        GGCCCGATAAC CCATTAT GTTATCGGGCA        TTTTTTTAACGTAAT 100 363
CCO40_RS01000  212469 ..  212498 +  -6.4   -3.9941   ATCGACCACCGGGCC       GCGTCCGGCATT AATAAA AATGGCGGACGA        TTTCATTCTGGCAAA  65 339
CCO40_RS01015  216752 ..  216775 +  -2.5  -3.81741   CGCCCCGACAAAACG         GGCTTC--CAG TACG CTGACGAAGCC          TTTCAGTTGTCCATT  52 231
CCO40_RS01030  218555 ..  218573 +  -3.7  -6.23545   AATACCAGGCGTACA             GCGCGCC CATTT GGTGCTC             TTTTTTTTATTTAGC 100 206
        lpfA  219447 ..  219469 + -13.5  -5.00616   TACAGACAATCATAA           TGGCAACGG AAATC CCGTTGCCA           TTTTTTCCAGCGGAG 100 56
        lpfB  220188 ..  220203 +  -3.2  -4.12599   GACATGTTGACACAG              CGCGTT AACT AACACG               TTTTAAAGGATTATT  57 14
        lpfC NONE
        lpfD NONE
        lpfE  224388 ..  224405 + -12.7  -4.49644   ACGAATAATCACTGA             GGGCCAG TTCG CTGGCCC              TTTTCCATTTTTAGT 100 33
        eptB NONE
CCO40_RS01065  226467 ..  226485 + -14.6   -5.4251   GACCAAATTCAGAAA             CCCTGCTC AAC GAGCAGGG             TTTTTTGTATCTGAA 100 36
CCO40_RS01070  226635 ..  226653 + -14.6  -5.71712   GACCAAATTCAGAAA             CCCTGCTC AAT GAGCAGGG             TTTTTTTGTATCGGA 100 36
CCO40_RS01075  227076 ..  227096 +  -4.7   -4.1196   GCCTGTAATAGCTGC           TGCGCGGC CTGGTA GCCG-GCA            TTTTCACCCTCGCTT  62 323
CCO40_RS01085  229054 ..  229079 + -11.1  -5.69023   TGGTTGAAATAATAC         AGACCGCCAGC CCGC GCTGGCGGTTA          TTTTTTTGATGTTTT 100 29
CCO40_RS01090  230448 ..  230468 + -12.6  -4.00411   GTTTTTGTGATCGCG            GTAGGCCG CACGA CGGCCTAC            TTATTTACAATTTTG 100 40
CCO40_RS01095  232638 ..  232661 +  -2.2  -3.86897   GTGTAGGCCGGATAA          GCGCAGCGCC ATCC GGCGTAATGC           TTTATCCGCGATGCA  53 67
        dppB NONE
        dppC NONE
        dppD NONE
        dppF  236707 ..  236718 +  -7.2  -3.30124   CGTTTTATGCCGGAT                GGCG GCTG CGCC                 TTATCAAGCCTACAC  63 44
CCO40_RS01130  238878 ..  238917 + -18.6  -3.73775   AATGGCAACATGCGC  CCGAACCAGGCCGCAGGG GAAA CCTTGCGGCCTTTTTCGG   TTTACTGCGGGTAAG 100 66
        bcsR  242795 ..  242808 +  -2.3  -2.58544   CACATTCATTAAGGA               AGCCA TGAA TGGCG                ATTCTGGGACTGCAG  39 18
        bcsQ  243533 ..  243575 +  -5.3  -2.57463   ATGCGGGCGACAAAA CGTCCGCCGGGAGCCTGCG ATGAG CGCCCTTTCCCGGTGGCTG CTTATCCCGCCGGTT  48 3
        bcsA NONE
        bcsB NONE
        bcsZ NONE
        bcsC  253176 ..  253189 +  -3.7  -2.91199   GGCCTGAGAAGCGCA               GCGCC ATCA GACGC                TATCATTAACCGTTA  46 77
        hmsP NONE
        dctA  256763 ..  256788 + -12.6  -3.37259   ATCTCGCCACTTATG         CCCGTAGTCC CTTCCA GGACTGCGGG          TGTTTGCGCATAATT  90 40
CCO40_RS01190  258660 ..  258673 +  -3.1  -4.32857   GAGTCGCCTGCGGCA               GTGGT GTCT ATCAC                TTTCTCTTTCGGCAG  62 230
        pdeH  260436 ..  260481 +  -2.5  -3.30658   TTCTGACCCTGTAAC GCCAGACTGTTCC-CGTAATAC GTG GTATTACGAGGCGCGGTCATCC TCCTTTTTCGTCTGG  46 27
CCO40_RS01205  262614 ..  262641 + -11.2  -3.02144   CAGTAACGTGAAACG        TAGCGCCGGATG ACGC CATCCGGCGCCC         TATTACAACGCCTGA  79 35
CCO40_RS01225  267841 ..  267861 +  -5.3  -3.72695   ATCGCGATACTTTTC            CAGCGACAG ACC CTGCCACTG            TTTAATAAACGCGAT  58 316
CCO40_RS01235  269970 ..  269994 +  -7.1  -2.79183   ACCGTTTTTAACCAG          TTATGGGCGAT TTC ATCGCCCAGCA          TATCGTCGCCATACC  52 213
CCO40_RS01245  272523 ..  272547 + -11.5  -6.02546   GAAGAGCAGGCTGAA          TCGGGATCC AGATCGC GGATCCCGA          TTTTTTTTGGTTTCC 100 59
        fraB NONE
        fraD NONE
CCO40_RS01260 NONE
        fraE  277035 ..  277070 + -13.3  -3.03441   GTATTAATCATGCAG    GCTTGTGCGCCCACC CTTGAA GATGGGCGCACAAGA     TATTAACGCATGGTC  86 34
CCO40_RS01280  280860 ..  280891 + -10.3  -3.01712   AACGCGCTGACGTTG      TCA-CCCGGCTTAT AAAAC GTAAGCCGGGATGA      TGTTAAAGGGGCGGC  73 31
        prlC  283074 ..  283096 +    -2  -3.18264   ATTACGGGATTAAAG           GCTGATTT TACGTGC AAATCTGC           TTAATGGATGAAACG  44 21
        rsmJ  283844 ..  283880 +  -4.4   -2.6924   CCTCTGACGGAGTAA   CGGATTGCCCGATG-GCG TTG CGCTTATCGGGCC-TACG   ATTCTCAATTATTTG  47 26
        uspB  286899 ..  286920 + -11.5  -3.68988   CACTGAATGAAAAAA           GCGGGCCAG TTTC CTGACCCGC            TTGTGTTAGATAAGC  87 35
CCO40_RS01315  290188 ..  290211 +  -5.8  -4.37092   TCCCGGATGGAAACC          CCCGCTGAGC GCAC GCCCGGCGGA           TTTTGTGACACGCAT  70 260
CCO40_RS01320 NONE
        rbbA NONE
CCO40_RS01330  295267 ..  295290 + -10.2  -3.50555   GCCGGGCAAGCGAAG          CGCCCCCG-GC AAG GCGCTGGGGCG          TTAGTCTTCTTTCGG  77 104
CCO40_RS01350  299273 ..  299295 +  -8.3   -4.6391   GAGGCCTGGCTTTCC           GCGGCGGCG CTTTC TGCCGACGC           TTTTGTATCGTTGTT  87 486
        tusA  300623 ..  300637 +  -7.1   -3.5511   AACGGCGTCGGCGAC               GCCTC CCGAC GAGGC               TGTTTCTGGATGCGG  60 122
CCO40_RS01385  306190 ..  306203 +  -3.7   -4.1196   TCCAGTTCGCCGGAA               CGGGC GGCA GACCG                TTTTCCACCTCGCTT  60 404
        ftsY NONE
        ftsE NONE
        ftsX  310052 ..  310068 +    -8  -3.68024   ATGGGCTTCCGTTCG              CAGGGA AAGAG TCCCTG              TTGTCTCTTCCCCGC  69 69
        rpoH  311130 ..  311151 + -10.9  -5.49579   CGAATTGCCAATGAA           CCCTCGAAT GTGA ATTCGGGGG            TTTTGTTTTTTGTAG 100 47
        livJ  312696 ..  312722 +  -8.7  -4.66535   TCTCCCGGCATGTAG        GCCGGATAAGCG TCAG CGCC-ATCCGGC         TTTCTTTTAGCGCTT  89 188
        livK  314666 ..  314684 + -13.1  -2.73159   AGATAAGTTATCCCA             CCGCCCG CACGC CGGGCGG             GTTTAAAAAGGTTAC  85 48
        livH NONE
        livM  316897 ..  316910 +  -3.1  -2.78867   GGCGAAAGGAGAGCA               GGCATG AGT CA-GCC               ATTATTAGCGGTTAA  43 19
        livG NONE
        livF  318446 ..  318459 +  -8.1  -5.65177   TAAAATTTTTCAAAA               GAGCC TGAT GGCTC                TTTTTTTGTACATGT 100 89
CCO40_RS01460 NONE
CCO40_RS01465  319244 ..  319270 +  -2.4  -5.04175   TCTCTGTCGCCTTAC         TATCTTTTTTTT GTA ATAAAAAAGTTA         TTTTTCTGTCATTCG  71 170
        ugpB  320701 ..  320737 + -13.1  -2.71011   GCCTGATGGCGCTGC    GCTTATCAGGCCTACAG CGT TTGTAGGCCGGATAAGG    TGCTTGCACCGCCAT  85 51
        ugpA NONE
        ugpE NONE
CCO40_RS01485 NONE
        ugpQ  324351 ..  324377 +  -9.4  -2.82516   GGCTGATGGTTTTCA         GCGGGATGTC AGGCTGC GGCGTCCCGC         TGTCCTGCTGCAACA  69 58
         ggt  326629 ..  326649 + -16.9  -3.39028   GATTTTTAATTCCAG            GCCCGGTGT CAG ACACCGGGC            TATTTGCAGATTATG 100 39
CCO40_RS01530 NONE
CCO40_RS01535  333806 ..  333838 +  -4.8  -4.40993   TGTAACCTTTTGTAG     GCCGGAT-AAGACGC GAAA GCGTTGCCATCCGGC      TTTTCATCGTTTGTC  68 46
        gntR  335036 ..  335047 +  -3.6  -3.53444   TTTGCAACTTGTAGA                GTGG GGGC CCGC                 TTTGAGCACGACTAA  50 151
        gntK NONE
        gntU  336984 ..  337009 +  -6.2  -5.80364   TATCGACACCGTAAG        CCGGGTAAGGCG TAAT CGC-T-ACCCGG         TTTTTTTATTGAGGT 100 90
         asd  338547 ..  338562 +  -6.1  -5.48825   TTTGTGTTAAACCAG              GGGTG CATCGT CACCC               TTTTTTTGCGTAATA 100 123
        glgB NONE
        glgX NONE
        glgC NONE
        glgA NONE
        glgP  348184 ..  348201 + -14.1  -5.32882   TTTAACGCTTGAGAA             CGGGGCC AAAC GGCCCCG              TTTTTTATCGTGGTA 100 44
CCO40_RS01590  349113 ..  349129 + -10.8  -3.80461   AAATAAAAAGACATA              GCGGGC AAGAA GCCCGC              TTTCGTCATCGCTTA  85 40
CCO40_RS01610  354605 ..  354638 +  -5.9  -2.84103   GCCTGTAAATAAAAA     ACGGCAGCCGGAACT TTCA ACTTCTGTCTGCCGC      TATCGTGAATGTTTT  51 46
CCO40_RS01620  356822 ..  356832 +  -2.4  -4.63218   AAAAGGGCGGTATAA                 ACCG CCC CGGA                 TTTTATTACGACGCC  64 56
        glpE NONE
        glpG  359782 ..  359803 +  -5.9  -4.56597   AACGAACGTGAGGCG           TATC-CGGCC TGT GGTCGAGATA           TTTTTCCAGGCCGGG  72 30
CCO40_RS01640  361023 ..  361033 +  -8.2   -3.1855   GCGAAGCTCAGCCAG                 GCGC GGC GCGC                 TTCGGTATTAAAACG  62 419
CCO40_RS01650  364133 ..  364143 +  -6.8  -3.25072   CTCAACGGTAGAGCG                 GGTG ATT CACC                 TTAACTTGTCGTGCC  59 206
        rtcB NONE
        rtcA  366587 ..  366606 +  -6.4  -2.78934   GGCCCGGTTTGTATG            TGTGTCTC AGTT GAGCCACA             ATTTGAACTGTATAG  53 75
CCO40_RS01665 NONE
CCO40_RS01670  367251 ..  367264 +  -3.8  -4.18018   AACAAATTTACACAC               CAGG ACGTTG CCTG                TTTTGCCTCAAACCC  62 92
        malP NONE
        malQ  375058 ..  375075 + -14.1  -3.99324   AGAAGAAGTAATAAA             GCCGGGG ATTT CCCCGGC              TTTATGATGGTGAGA 100 30
        bioH  379265 ..  379294 +  -7.1  -2.90075   GGCGGATAAACGTAT       TGAAGCGCGC-GGC GTC GCCAGTGTGCATCA       TGTAATTAAACAAAC  53 300
        ompR  387267 ..  387314 +  -4.8  -3.18023   CCGGACGGTTCTAAA GCATGAG-GCGAATGCGCTTCTC GCC GCGAAGTTCATTTGCCCGCACGC TGTTGCTCATCGTCA  52 20
        envZ  388622 ..  388647 + -13.4  -3.28791   ACAAAAGAGGCATAA         GAAAGGGAGG TATTAC CCTCCCTTTC          TTCTCAACGCCGGAT  95 26
CCO40_RS01755  392422 ..  392433 +  -5.8  -3.30124   TTTTTGCCGGATGGC                GGCA TAAA TGCC                 TTATCCGGCCTACGG  56 43
        nudE  397655 ..  397668 +  -9.5  -5.14563   AAACACAATAAAAAA               GGCGC CGGA GCGCC                TTTTTTGATCAGAAC  93 99
CCO40_RS01790 NONE
CCO40_RS01795  401648 ..  401661 +  -3.7  -3.53419   TTAACGAGGAGCGCC               GCCCG TGAA CGCGC                TCTTTGATATCTGGT  52 5
CCO40_RS01800 NONE
CCO40_RS01805 NONE
        hofQ  403783 ..  403798 +  -7.6  -2.84878   GCTTTTCGTTGCTTA              CGCATT GATT AATGCG               CTTTGCCTTGCCGAA  59 139
        aroK NONE
        aroB  405816 ..  405840 +  -5.8  -4.28432   CAACAAGAAAGGTCA          GACTGATATT GCGTA GATGTCAGTC          TTTTAGCTTCAGGTT  67 41
        damX  407316 ..  407337 +  -6.6  -2.97613   AGGATGCTGTCGGAG           CTTTCTCC ACAGCC GGAGAAGG            TGTAATTAGTTAGTC  56 166
         dam NONE
         rpe NONE
         gph NONE
        trpS  410737 ..  410751 + -11.4  -5.76633   AGACCTGTAAAAAAA               CCGGGA AAA TCCCGG               TTTTTTTGTATCTGC 100 127
        ppiA  424968 ..  424988 + -11.8  -4.46155   CATAAAACATGCCTG            CGCGGGTG CGAGC CGCCCGCG            TTTTCTCCCTGTCTC 100 36
CCO40_RS01890 NONE
CCO40_RS01895 NONE
        pabA  426447 ..  426465 +  -3.2  -2.94888   CATTGAGTGATTTTT             TATTCATA TTT TGTGAGTA             TAATTTCACTGAATT  44 52
CCO40_RS01905  427727 ..  427763 + -11.5  -3.16437   GTGGTGGCCTGATGG    CGGATTGCCGGATAAGC GTA GCGCATCCGGCAGTCGG    TCTTAACCTTTTGTA  81 29
CCO40_RS01920  431304 ..  431329 +  -9.7  -2.72461   GTTTTTATCTCGTAG         GCCCGATAAGCG TAG CGCC-ATCGGGC         ATTTCACCGCGGTTA  69 83
CCO40_RS01940  434086 ..  434104 +    -3  -3.85698   TTCTGTTCCGGTGCT             GCTGACCG CAA CGGTAATC             TTTATACCGGGGCGA  54 57
        kefG NONE
        kefB NONE
CCO40_RS01965 NONE
        slyD  440025 ..  440039 +  -8.5  -5.90981   ATCGGGCACAAAAAA               GCGGG TTATC CCCGC               TTTTTTTTCGTCTCA 100 186
        fkpA  441319 ..  441340 +   -13   -5.7946   AATAAAAACTGAGAG           CCGCCGCT TGTAAT AGCGGCGG            TTTTTTTATTCAGGC 100 36
CCO40_RS01985 NONE
        tusD  442686 ..  442698 +  -2.7  -2.53748   CGATCGGGTGGTGCA                GTTTT AAT GAAAC                GTATTGCATTTGTCT  40 19
        tusC NONE
        tusB  443399 ..  443421 + -10.6   -4.7268   CGCCCTAAAATTCGG           CGTCCTCATA TTG TGTGAGGGCG           TTTTATTACGTGTTT  95 81
        rpsL NONE
        rpsG  444435 ..  444458 +  -8.9  -4.21275   GTCATAGTCACCAGG          CGGGCG-CTT CAGGT AAGTCGCCCG          TTTTGGATAACTTAA  82 51
        fusA  446647 ..  446672 + -13.3  -2.78935   AAAAACCAAAATCCC         GTGCTCTCTCC TGAA GGGGAGAGCGC          TATAGTAAGGAATAT  85 52
         tuf  447906 ..  447921 + -11.8  -5.11063   GTTTTGAATTGAAGA              GGGCGC TTCG GCGCCC               TTTTTGTTGCCTGCT 100 55
         bfd  448254 ..  448264 +  -5.4  -5.78622   TTAAAGAGATCGCCT                 GAGT CAC ACTC                 TTTTTTTTGACATCC 100 24
         bfr  448807 ..  448829 +  -5.7  -2.52623   GGTTACCGATTAACC          GTCTGGAAAG AAAA CTTTCCA-AC           CTGTTATGAAACCCG  49 28
        rpsJ NONE
        rplC NONE
        rplD NONE
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ  454627 ..  454652 + -12.7    -5.252   CGCATTCTCAACGAA         TAAACGGCTCA GCGA TGGGCCGTTTA          TTTTTTCTACCCATA 100 48
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN NONE
        rpsH NONE
        rplF NONE
        rplR  457657 ..  457667 +  -3.2  -3.32963   ATGCTGCCCGTGAAG                 CTGG CCT TCAG                 TTCTAAGGTAGAGGT  48 9
        rpsE NONE
        rpmD NONE
        rplO NONE
        secY NONE
        rpmJ  460329 ..  460358 + -12.3   -4.6645   TTTCTTGCAAAGTTG       GGTTGAGCTGGCTA GAT TAGCCAGC-CAATC       TTTTGTATGTCTGTA 100 55
        rpsM NONE
        rpsK  461197 ..  461215 +  -4.4  -4.15508   CGTCCGCCGAAAAAA             CGTCGCGT ATA ACGCTTCG             TTTTCCAGGTTAGTT  64 14
        rpsD  461847 ..  461865 + -10.4  -3.14132   ACACCTGATCGTCGA             GCTTTACT CCA AGTAAAGC             TTAGTACCAAAGAGA  74 10
        rpoA NONE
        rplQ  463314 ..  463343 + -16.7  -2.82516   TAATCTGTAGTAACG       TAAAAAAACCCGC TTCG GCGGGTTTTTTTA        TATCCTCCTGAACCC 100 38
CCO40_RS02180 NONE
        zntR  464224 ..  464245 +  -5.8  -3.61244   GTTGATTTATTGAAC           CGGCG-GGG CTACA CTCGCGCCG           TTAATTTATACAATC  59 36
CCO40_RS02190  464537 ..  464571 +  -2.1  -5.09426   AATAACACTTCCTCT    TTAGAAGGCGCTGGCG GAGC TGCCGGC-TCTTCTGC     TTTTTTACGGTTGAG  74 22
        dprA NONE
         smg NONE
CCO40_RS02230 NONE
        tsaC NONE
        aroE NONE
CCO40_RS02245  473214 ..  473252 +    -8  -4.08767   ATTGGCGGAGTACTG   CAGGCCCGATCTCTCAGC ATC GCTCAGGGGGCGGATCTG   TTTTACCGGACTGCC  77 73
CCO40_RS02255  473944 ..  473958 +  -6.4  -3.12351   GGTTGAAGAGAAAAA               TCCTGA AAT TCAGGG               TTGACTCTGAAAGAG  56 7
CCO40_RS02260 NONE
CCO40_RS02265  475909 ..  475944 +  -9.2  -4.00532   AGGCGTTGCCATCAG    TATCTCAAAACTGACT TACG AGTCACGTTTGAGATA     TTTGCTCTTTAAAAA  79 61
CCO40_RS02270  479051 ..  479062 +  -4.4  -2.78679   AGAACGTAAAAACGG                TCTG ATAA CAGA                 ATTTGCCTGGCGGCA  47 102
         rrf NONE
CCO40_RS02280 NONE
         rrf  479440 ..  479471 + -18.2  -5.05601   AGACATCAAATAAAA      CAAAAGGCTCAGTC GAAA GACTGGGCCTTTTG       TTTTTGTCTGTAGTC 100 37
        envR  486194 ..  486211 +  -4.1  -3.63968   TCATTTTCTACCCCT             TCTGCCA CAAT TTGCAGA              TTTAACGCTTTCGCC  53 194
        csrD  501344 ..  501371 +  -5.6  -3.85698   GATTGCTGCTGATTT        TTTCAGCCCTGAG GGA CTCAG-GCCGAGA        TTTGTAACAAAGGAA  61 172
        mreB  502531 ..  502545 +  -2.8  -2.75064   ATGCACGGCGGCGAC               CTGTTC AGC GAAGAG               TAGTTGGATACGGGC  41 8
        mreC NONE
        mreD NONE
CCO40_RS02400 NONE
         rng NONE
        yhdP NONE
        tldD  511933 ..  511946 +  -5.3  -3.96999   TCACTACCTGCACTT               TAAGC GGCA GCTTA                TCTTTTTCGGTGTAC  63 240
        aaeX NONE
        aaeA NONE
        aaeB  516079 ..  516097 +  -8.1  -5.65177   GCTAACCCACAAGAA             CCGATGC CAAAA GCGTCGG             TTTTTTTATGACTAT 100 36
CCO40_RS02440  516730 ..  516746 +  -4.3  -3.06261   AAATGGTGCCCATCG              GTTGCAG ATT CTGCGCC              TGTTCCGCGTTGACC  47 243
         mdh  519409 ..  519428 + -12.8  -3.98913   CTGTTCCTGCCCGAT            GCCGGGGC TTTT GCTCCGGC             TTCTTTGACTGTAAA 100 42
CCO40_RS02465 NONE
CCO40_RS02470 NONE
CCO40_RS02475  522264 ..  522282 +  -4.5   -2.5474   ATCCTTTTCCCTTTT             CATCCGT AATTA ACGGAAG             CTGTTCTGACTAAGG  46 17
        ttdA  523183 ..  523196 +  -2.4  -2.98447   TTACACCATTACGTC               TCAC AGCGGA GTGA                ATTTCTGATGACTAA  41 4
        ttdB  523955 ..  523971 +  -3.6  -3.82519   TAGCCCCATTATCGT              GCCTCC TGCCT GAAGGC              TATTTTATGACTAAT  53 159
CCO40_RS02490 NONE
        oadA NONE
CCO40_RS02500 NONE
CCO40_RS02505  528095 ..  528117 + -11.3   -4.4078   TGACTAGCCGTCGAA          CGACGCAGGC AAAA GCC-GCGTCG           TTTTAGTTCGACGCC  93 34
        zapE  532543 ..  532555 +  -3.3  -3.39896   ACAAGCGCAGCGCCC                CGGCA TTA TGCGG                TATTATATCTGTGCA  48 46
        rplM NONE
        rpsI  533699 ..  533712 +  -9.5  -5.60993   CTGTTAGCGAAAAAA               CCCGC TTCG GCGGG                TTTTTTTATGGGCAA 100 64
        sspA NONE
        sspB  535124 ..  535141 + -12.7  -4.88918   TAGTAAAATAATCAA             CAGGCCC TGAA GGGCCTG              TTTTGTTTGGCCTCC 100 30
        nanR  536051 ..  536073 +  -4.8  -3.60925   CCCGGTTTAGTGAAG           CAGATCGC ACTATAA GCGTTCTG           TATTATTTGCTGCTT  57 57
        nanA NONE
        nanT  538659 ..  538681 + -16.4  -3.52113   GAAAAGTTAATCCGC           TTGCCCGGTT TTC AACCGGGCAA           TATTTGTAAGGGAGT 100 31
CCO40_RS02570 NONE
        nanK NONE
        nanQ  541092 ..  541111 +  -6.4  -3.61356   AAACGTGTAACCCCA            TATGCAGC ACCT GCAGCATA             TTTGCCGTGCCTAAT  57 392
CCO40_RS02610  552238 ..  552263 +  -8.3  -2.60813   TGGATACCACCTGTA         GCGTAGCGT GATGAGGG GCGCTACGC          ATATTTCGCACAATA  63 20
        arcB  554721 ..  554737 +  -2.1  -3.86266   CCAACACCAGGGAAA              TCGTGGC TGC GCCGTGC              TTATTATGATGATGT  53 73
        elbB NONE
        mtgA  556293 ..  556304 +  -7.2  -3.30124   ATTTTGTCGAATGGC                GGCG CGAA CGCC                 TTATCCGGCCTGCGA  63 40
        mlaF NONE
        mlaE NONE
        mlaD NONE
        mlaC NONE
        mlaB  568607 ..  568622 +    -9   -2.9911   CCGGCACTTTTACCG              CGCTGA TTTA TCAGCG               TAATCTTTTGCTTAT  68 117
        ibaG NONE
        murA  570290 ..  570313 + -11.7  -4.17048   CTGTACGCTGAATAA          CCCCCGCGA ACGCGA TTGCGGGGG           TTGTTTTACAGACAC  95 45
        rplU NONE
        rpmA  572694 ..  572714 +   -14  -4.75174   CGGTAACGGATGAAA            GCCCCGCA CCTGT TGCGGGGC            TTTTTACATTCGATG 100 54
CCO40_RS02745 NONE
        cgtA  574996 ..  575015 + -16.4  -4.91285   GCCTACAAAAGCCAA            CGGGCCGC ATTT GCGGCCCG             TTTTATTATGTTCGT 100 73
        greA  577285 ..  577299 + -12.8  -4.36914   TAAAGAAAGGAAAAA               GGCCGC ATA GCGGCC               TTTTATCAACGGAGA 100 74
        rlmE  578497 ..  578511 +  -2.8  -3.40899   TAGAGTATCCTGACG               CTGTTT TTA ACACAG               TTGTAATAAGAGGTT  46 84
        ftsH  580516 ..  580535 + -12.8  -5.86609   TAGCGCTCACCGAAA            CCCTGGGG CTTG CCCCGGGG             TTTTTCTTTTTTTAA 100 65
        folP NONE
        glmM  582866 ..  582880 +  -5.7  -4.00469   GCTTAAATTGCCCTT               GCGAA GGTCA TTCGC               TTTGGTTAGTATTCA  63 132
        secG NONE
CCO40_RS02795  583430 ..  583445 +    -9  -5.92337   ATATTCCGAAAGAAA              GACGCT GAAA AGCGTC               TTTTTTTTCGTCTGT 100 41
CCO40_RS02800  584863 ..  584878 + -11.8  -3.08679   GATATTCACAAAAAA              GGCCGC TTTC GCGGCC               TGTTGCATCAACGAC  81 74
CCO40_RS02810  586790 ..  586805 + -10.4  -5.60689   TTCAGTTATCTAAAG              CCCCGA TTTA TCGGGG               TTTTTTGTTATCTGA 100 152
        rimP  587298 ..  587316 +    -3  -3.07487   TGAGTAATATCCAGA             AGGCGAAC CTG GTTCCCCA             CTTTTAACAGTCTGG  43 0
        nusA NONE
        infB  591733 ..  591747 +  -9.2  -5.61913   CAAGAAATTTAAAAA               GGGGCT TAT GGCCCC               TTTTTTGTCTTTATT 100 202
        rbfA NONE
        truB  593172 ..  593186 +  -2.8  -3.95071   GTAGAATACCGCCGC               TTAACG TCG CGTAAA               TTATTTAACAGTTTA  54 75
        rpsO  593565 ..  593581 + -10.8  -5.00884   GAGTTTCAGAAAGAG              GGGGCC TTCAT GGCCCC              TTTTTTCCAGCAGAT 100 48
         pnp  595931 ..  595951 + -18.3  -3.57792   GTAAGGTAGCCTTTT            GCCCTCCGC AGT GCGGAGGGC            TTTAGACCTGGCTGG 100 37
        nlpI  596947 ..  596972 +  -7.5  -4.04023   CGTAATCTTTTTGAT         TGCCATCACCT TCGC GGGTGAGGGCG          TTGTTGTTCGTTAAT  72 59
        yrbN NONE
        deaD  599025 ..  599047 + -13.4  -6.11392   AAAGTAAAATATACA           GCCCCGATCG TCA CAATCGGGGC           TTTTTTTATTTCTTT 100 69
         mtr  600573 ..  600607 +  -8.4  -3.89215   ATTTCATCCGCCTGG     GTCTCCCGCAGGATGG ATT CCAGCCCGTGGCGGAC     TTTCGCTTTATCACC  71 219
CCO40_RS02885 NONE
CCO40_RS02890  604824 ..  604860 +  -5.9  -3.75169   CAAACGCTTCGCGTT   CCG-TCACAAGGCGCT CTTTCT GGCGCTTTGTGAGCTG    TTTGATGCGATACTC  60 74
CCO40_RS02900  605900 ..  605917 +  -3.3  -5.72207   AATAGCCTTATCAAT             GGTGACG CTGG CCTCGCC              TTTTTTTCCTTTCAC  89 365
CCO40_RS02910  606879 ..  606890 +  -7.2  -3.43338   CATTTTTATCGCCAC                CCGG CACA CCGG                 TTACTTAATATACGT  65 80
        rsmI  611777 ..  611787 +  -3.2  -3.89822   AACCTTCGTTAAACG                 TGGT AAT ACCG                 TTTGTCGCATCAATG  54 392
CCO40_RS02990 NONE
CCO40_RS02995  623526 ..  623543 +    -7  -4.08064   TCAAACATATGAAAA             CATGGC CCTTAA GCCATG              TTTTGCGAGGCGCTT  70 221
        garL NONE
        garR  627366 ..  627394 + -10.2  -2.64803   TCGCTAACGACGTTG        TGCCCGGATGGC GTGTA GCGATCCGGGCC        TGAATTTCAGGCTGG  70 34
        garK NONE
        rnpB  629018 ..  629031 +  -9.5   -5.0925   CACTTCTTCATAAAA               CCCGC TTCG GCGGG                TTTTTGCTTTTACAG  93 36
        tdcA NONE
        tdcB NONE
        tdcC NONE
        tdcD NONE
        pflB  637362 ..  637401 +  -2.7  -3.08798   TTACTCAGGCGATGT  AACGTGAACGGGGCGATC GTGTG GATCGCCCCGCG-ACGGA  TCTTCGCTGAACGGT  43 24
        tdcG  638858 ..  638877 +   -15  -5.58179   CAGAAGTTGAGAAAA            GGGCGCAC CAAA GTGCGCCC             TTTTTTGTTGTGATA 100 86
CCO40_RS03055 NONE
CCO40_RS03060  641853 ..  641890 + -11.4  -3.57144   CGGGTCTACCCGTTA  TCA-GCCGGATCG-GGCG CTTG CGCCGCCATCCGGCATGA   TTTCAGGCTGCGGCC  87 98
        yhaJ  643787 ..  643797 +  -8.2  -3.53012   GCCGGAAAATAAATA                 GCGC GCG GCGC                 TTTAAAAGCGGCGCC  67 29
        rlmG  655915 ..  655931 +  -9.4  -2.66733   TTCCTGGCGCAGACC              GCCTGC CTGTT GCAGGC              TGGTATCAATTCCCC  59 499
CCO40_RS03165  661067 ..  661107 + -17.1  -2.78384   GGTTGCAACGGTAAT G-ACATCCGCCCGGT-AGC AACAA GCTTACCGGGCGGATGTGC TCTGATAGAAGGCGG 100 52
CCO40_RS03170  663226 ..  663240 +  -7.8  -5.40072   GCCATTGCGCGCCGT               TCGCGG TAA TCGCGA               TTTTTTTCCGCCCGC 100 258
CCO40_RS03180  664670 ..  664687 + -11.3   -3.5275   GTCAGAAACAAAAAG             GCCACTC TTTA GAGTGGC              TTAATTATATGATTT  85 59
         mug  665510 ..  665527 + -14.1  -3.95073   GGCCTGATAAAAAAA             CGCCGCC TTGC GGCGGCG              TTTATACGTGTGCGG 100 112
        tsaD  671184 ..  671210 +  -5.8  -3.01712   CCGGTCAACCCTTGT        GGGCCG-ATCC CCAGAC GGTTGCGGCCC         TCTTCCAGACGCAGC  52 228
        folB  672353 ..  672371 +  -3.1  -3.40051   AAACGGTTATATATG             GGGTCTT AACGC GAGATCC             ATTTTTGCAGTGTTT  48 69
        bacA  673300 ..  673331 + -11.6  -3.64822   GTCTGATAAGCGCAG      CGCCATCAGGCA ATTTATCG TGCCGGATGGCG       TTTAGCTGGCGGGGT  87 97
CCO40_RS03250  676859 ..  676888 +  -8.5  -2.94708   TATGCGGACTTGTAG       GCCGGAT-CAGGCG AAA CGCCGCCATCCGGC       ATTATTTAAAGGATA  65 90
        glnE  679738 ..  679750 +  -5.5  -3.82484   GCAAGCTGGCGGAAG                TGGCT GGT AGCCG                TTTGAATTATGCTAT  61 8
        hldE  681317 ..  681330 +  -2.3  -5.76949   TTCGACGCGTATCTC               GCGGT TGAC GCTGC                TTTTTTTTCGACCTA  91 106
        glgS  684523 ..  684550 +  -9.8  -4.90906   ATTATTCAGATCTTA        TATGAGCGGGCC GTCA GGCCCGTTCACG         TTTTTACTCTTGTGG  93 68
        ribB  685964 ..  685983 + -12.2  -5.50925   ATCATGGTTGAAAAA            GCCGATGA GATG TCATCGGC             TTTTTTGTATTCCTT 100 49
        ygiD  692057 ..  692075 +  -2.4  -4.08064   AACAGCGGCAACAAC             GCTTTATT GGA GATAATGC             TTTTCCAGGCCGGTT  56 448
        nudF NONE
CCO40_RS03340 NONE
        cpdA NONE
        yqiA NONE
        parE  699823 ..  699842 +  -8.6  -2.94633   TCTCGCGGATCTCGA            CGTGTAAC GGTT GTTGCACG             CTTTATCCGGTCTGT  65 19
CCO40_RS03380 NONE
CCO40_RS03385  704487 ..  704523 + -13.8  -2.58822   TTAACTTCCTCGTCA    CCTGGCTCACGGTTTG TGACT CAGACCGTGAGATAGG    GTATTATCTGCGGCA  86 37
        parC  706899 ..  706942 + -13.3  -3.61103   CCATCCGGCGCTCTG CCGT-TGCCGGATGACGACGC AGTA GCGTC-TTATCCGGCCTACGG TTTCAGATCGGATTA 100 80
        plsC  707874 ..  707894 +  -3.9  -4.18762   TAGAAATCATTTTTT            CAGGCACAA CTC TTTAGCCTG            TTTTACATGGAGCTT  62 61
        ftsP  709330 ..  709365 +  -5.4  -4.07568   AGCGTCGTAAAGCGT    CCGAGTACGGGTCTG AATAGCG CAGACCCGT-CAGGG    TTTTCAGGAAGGAGC  65 31
CCO40_RS03420  715054 ..  715065 +    -3  -3.98981   CCAGAGGAGGGGATA                TCAT GGGT ATGA                 TTATTATTCCCTGTT  54 226
CCO40_RS03425  715424 ..  715443 +   -15  -4.77036   TATGCCTCACGAATT            CTGGCCGC CAGC GCGGCCAG             TTTTTCATCATCAGC 100 199
CCO40_RS03450  720784 ..  720798 +  -5.6  -2.61912   CAACGAAGCGTAACC               GGGCCA TCC TGGCCG               ATTATGGATACGTCA  50 62
        exbB NONE
        exbD  724236 ..  724263 +  -9.9   -5.4833   CTGCTGATGCTGTAG       GCCGGGTAAGGCG AAGT CGCC--ACCCGGC        TTTTTTATTGCCTAA 100 46
CCO40_RS03490  726864 ..  726888 + -14.4  -4.59109   GCGTAGCGAGTCAAA          CCTCACGTAC TACGT GTACGTGAGG          TTTTTGCGCGCTGTC 100 145
CCO40_RS03495  727778 ..  727793 +  -7.6  -2.81055   CGATAACGAGAGTGC              GTCATC GTCT GATGAC               TAATCTCTTATATTC  58 286
CCO40_RS03500 NONE
CCO40_RS03505 NONE
        hybO NONE
        hybA NONE
        hybB NONE
        hybC NONE
CCO40_RS03530 NONE
        hybE NONE
        hypA NONE
        hybG  736623 ..  736648 +  -4.1  -3.28712   TATATCGCTCTATAA         TCGTTGTATAA TTAT TTATATATCGA          TTATGGGGCGAAACC  50 59
CCO40_RS03550 NONE
CCO40_RS03555  738455 ..  738487 +  -4.8  -3.63283   CATCAGGGAATACCA      TGCCGGATGACG ACATTACTA CCCCATCCGGCA      TTATGGTTTAACTTT  57 53
         gss  741457 ..  741493 + -13.8  -3.81488   TAACGGGGTCATTCT   C-GTCGGGATATCGGCG TGGG TGCCGATATCCCGCCTG    TTGTGTTTACCAGCG 100 38
CCO40_RS03570  743301 ..  743334 + -16.9  -3.14344   TGGCTGTGTTTGTTT     ACCCGAATCACTTAC CTTA GTAAGTGATTCGGGA      TTAATCAGCAACATC 100 154
CCO40_RS03590  749423 ..  749442 +   -15  -3.25539   GCTACCGGGTTCTAA            CGGCCACC TTCG GGTGGCCG             TCTTCATTACCCTTA  95 76
CCO40_RS03595 NONE
CCO40_RS03600  751782 ..  751793 +    -3  -5.46698   GAATAGTTTGTTTTT                TGAT TTAA ATCA                 TTTTTTAGTTTTCAC  79 199
CCO40_RS03605 NONE
        iraD  753215 ..  753228 +  -5.2  -3.69354   TAATGCAGGAAGGAA               CGCC GGGCCG GGCG                TTTAACATTATCCCA  57 41
CCO40_RS03620 NONE
CCO40_RS03625  756665 ..  756675 +  -3.2  -4.09805   TGAAAGCCATAAGCA                 GGGT TGA ATCC                 TTTAATTGTTCGTCA  57 19
CCO40_RS03630 NONE
CCO40_RS03635  759052 ..  759068 +  -6.6  -3.09234   TGTACCGAAGACATT              CTGGTT CGGGA AACCAG              TTCCGTGCGATTTAT  54 163
CCO40_RS03645 NONE
CCO40_RS03650  763598 ..  763611 +  -3.8  -3.85698   AATCTGTTTACACGC               CGCA GCAGGA TGCG                TTTCTGCCAGCACAA  56 418
        ripC  765049 ..  765064 +  -5.4   -3.3761   GATTACTCGCCCGGG              CAGGGA TCTT TTCCTG               ATTTTATTAACAGAG  56 9
        ripB NONE
        ripA NONE
CCO40_RS03675  767603 ..  767619 + -10.9  -2.62616   TCGAACCAAGGACAC              GGGGATT TTC AATCCCC              TGCTCTACCGACTGA  66 217
CCO40_RS03690  771202 ..  771212 +  -4.6  -4.24948   ACACGGTCTGCCAGT                 CGGT AAT GCCG                 TTTTGAGTGTAATAC  66 209
        trmB NONE
CCO40_RS03720  776314 ..  776335 +  -9.3  -3.11024   GGGACTAATAAGTAC           AGGGTCGGC AAAT GCCGGCCCG            CTTTGTCTTGAGGGA  68 33
CCO40_RS03725  777095 ..  777115 + -15.5  -5.35365   TCCTTTTTAAACAAT            GGCGCAGAT CGT ATCTGCGCC            TTTTTATTCTGTTTT 100 45
        ansB  778317 ..  778340 + -11.6  -2.60615   CAGTATTAAAGATAA          TGCCCCGGTC GGAA GGCCGGGGCC           ATCTTTGGAAGACCT  77 32
CCO40_RS03735  779486 ..  779537 + -12.5   -3.9461   TAACCGCCACAGGTC GG-TAAG-C-GTCGCGCCATCAGGTA TTT TACCCGTTGGCGCGACAGGCTTATCC TTGTTATTCCGCGAG 100 61
CCO40_RS03765  783929 ..  783945 +  -2.1  -3.08812   TGTATCCTGGCGAAC              CGGCGTT AAA ATCGCAG              CTTTGTTAAAACCAC  42 109
CCO40_RS03770  785075 ..  785087 +  -3.3  -4.83169   ATGCGTTGTCCTATT                GCAAC GCC GATGC                TTTTTGTGCCGAAGT  70 436
CCO40_RS03815  792675 ..  792692 +  -6.3  -4.52703   GACTGAACAAGGGCG             CTCTTGT TAAC GCAAGAG              TTTTCTCGTGGTTTC  76 244
        yqgB NONE
        speA  794887 ..  794914 + -15.8  -4.94487   GAGTATTCCGCTTGT        GGGTCGATTTAA TTAT TTAAATCGACCC         TTTTATATTTTATAA 100 45
CCO40_RS03835  795821 ..  795832 +  -2.2  -2.52464   GGAAGGACTGTGTGA                CGCGC ATA GC-CG                TAGGTTGCGGGAAAG  39 104
CCO40_RS03840  797192 ..  797214 +  -2.7  -3.93288   CCTGACAGTACCGGG          GC-AAGATCG TGAT CGATCATCGC           TTTAATTGCATACCC  54 521
CCO40_RS03850 NONE
CCO40_RS03855 NONE
CCO40_RS03860 NONE
CCO40_RS03865  802065 ..  802097 + -11.3  -4.79756   TTTTCTGACTTCAGA      GCCTTTTCGCGTTGA GGC TAATCGCGGAAAGGC      TTTTTACGTTCTGTA 100 116
        speB  804285 ..  804308 +  -4.6  -4.57073   TTCGGACTCCTGACG          CTGCGAGAACT GCG AGTTCAC-CAG          TTTTTCGCCAAGATC  71 327
         tkt  807129 ..  807148 +   -15  -5.56673   TAATACGGCATAAAA            CGGGTCGC TTCG GCGACCCG             TTTTTTATTCTCCCT 100 45
         epd NONE
         pgk  812817 ..  812836 +   -15   -3.6053   AAGAAGTAATCGTTA            CGGGCAGG GATT CCTGCCCG             TTGATTTATCGCCGA 100 32
        fbaA  814011 ..  814030 + -12.2  -5.73339   GTCTGCTGATTGAAA            TGGCTTCC CTCG GGAAGCCA             TTTTTTTATCGTTAT 100 45
CCO40_RS03930  815143 ..  815165 +  -4.1  -3.73302   TCTCTGGTTATTGAG          CGGATAAGCG TAGC CGCC-ATCCG           TTATTCAGTCTCTTC  55 90
        argO  815901 ..  815917 +  -3.7  -3.54475   TCGCGCATATGCACG              CGCTT TTCAACT AAGCG              TTGTCTGATGGACAA  52 12
CCO40_RS03940  816760 ..  816785 + -12.5  -4.39828   CACGCAGTAATCTTG         CCCGGCCTGGG CGCT TCCAGGCCGCG          TTTTCTCCCGGTGTT 100 31
        rpiA  818779 ..  818792 +  -2.4  -2.92924   GTCAGGGCAAATTTG               GTGA CATGTA TCAC                GTTTAATCGTTTGCC  41 78
        serA  820237 ..  820258 + -11.6  -3.16682   CTAATTTCCGCTAAA           TGGGCAGG AGATGA CCTGCCCA            TCCTTTCTTCTGGTT  81 37
CCO40_RS03975 NONE
        pepP NONE
        ubiH  825108 ..  825119 +  -7.2  -3.30124   GTAAAAATACCGGAT                GGCG GCTT CGCC                 TTATCCGGCCTACGG  63 93
        ubiI  826414 ..  826440 +  -5.8   -3.8901   AACCCGTCACACTTT        GCTTTCCCGGC TATCGC GCCGGG-GGGC         TTTCCTCGTTTGAAA  63 71
        gcvT  827894 ..  827914 +  -8.9  -2.84946   AAACCTGTTTTTGTG            CGTAACGGC AAA GCCGTCGCG            TGATTCATCCTTTTT  67 2
        gcvH  828379 ..  828394 +  -5.4  -3.41359   GCCTACTCACTGCAA              CGCGAA TTAT TTTGCG               TATTCGTTTTCGCAC  56 72
        gcvP  831394 ..  831407 +  -9.5  -4.24123   CGACTGTTTTCTAAA               GGCGC TTCG GCGCC                TTTTCAGCTTGTTAA  84 51
CCO40_RS04010  833029 ..  833040 +  -4.4  -3.94823   GCGATAGTCGTCGTT                GATG CTGC CATC                 TTCTTCTACTTTGTC  60 337
        yqfB  834803 ..  834813 +  -5.4  -3.86897   AGAGGCGCAGTTCAT                 CGTT ATG AACG                 TTTCTCCGGAGTAAG  63 161
CCO40_RS04025  835554 ..  835592 +  -6.1  -4.16279   CTACGAGAGCAGCAC  GT-GCG-AGCCTGATGGCG TTG CGCTATCAGGCTATCCGAC  TTTTAACGTGATATC  70 89
        sdhE NONE
CCO40_RS04040  837559 ..  837580 +  -2.2  -4.15044   AGGTTTCAGGCGTAG           TGTTCGGC CATTTC GCCGAGAA            TTTGTTCACACCAGG  55 88
        xerD NONE
        dsbC NONE
        recJ  841592 ..  841617 +  -9.1  -3.30903   TTCGCTGTAATTAAG         GGGCGAAAT CCGCTAAT ATTTCGCCC          TTATAACCGCATTTT  71 62
        prfB NONE
        lysS  844295 ..  844325 + -15.5  -3.18366   AAATAAGATGTAAAT      TGCCGGGTGG-GGC ATTA GCCGCCATCCGGCA       TCTCTTCGTTCAGGC 100 35
        actS NONE
CCO40_RS04085 NONE
CCO40_RS04090  847468 ..  847480 +  -3.4   -3.0438   GTTTTTGATGTCTTC                CCTT TTTCC AAGG                TCATTATTGTTCATG  45 62
CCO40_RS04095 NONE
CCO40_RS04100  850559 ..  850588 + -19.5  -4.45484   GATTCCTTTAGTTAA       TAGCGAACGCACA AGTT TGTGCGTTCGCTA        TTTATTCTATATATT 100 39
        arsR  851407 ..  851422 +  -3.3  -4.28656   AGGTATCTGATGAGC              GAGTA AAAGTG TACTC               TTTTGAGTATTGCAT  60 405
CCO40_RS04115  852437 ..  852465 + -11.1  -4.72729   TCACTGACTTTGATA        CGGCTATTAAACT GCT GGATTAATAGCCG        TTTTCATTTTCATTG  95 3
CCO40_RS04140  856468 ..  856486 +  -9.6  -3.30243   TTCTAAATTCAATAA             CGGTACAT CTC ATGTGCCG             TTGTCCCGCATAAAT  74 41
        gatA NONE
CCO40_RS04150 NONE
CCO40_RS04155 NONE
         rpe  859584 ..  859600 +  -9.4  -3.98236   ACCAATTACCTGAAA              GGGGAG TTGTC CTCCCC              TTTGTCATGAGATTT  81 100
CCO40_RS04165  860366 ..  860376 +  -5.4  -2.52464   CATTCTGATGGATGG                 TGGT CGT ACCA                 TCGCTTAAAGGGAGG  49 7
CCO40_RS04170  860966 ..  860992 + -19.6  -5.68438   CTTGAGTAATCGCCC         GGAAACGTCCCT TAA AGGGACGTTTCC         TTTTTTGTTTCCTGG 100 32
CCO40_RS04175 NONE
CCO40_RS04180  863275 ..  863291 +  -5.1   -5.4593   TTACGATCATAATCA              TCGATCG TAT CGATCTA              TTTTTATTGTTTTAA  87 516
CCO40_RS04185  864114 ..  864139 +  -4.7  -4.60797   TAACGACAGGGAGAA         GCCGTCC ACGGAGGGGTTC GGACGGC          TTTTATATCTGACCA  71 55
        stdB NONE
        stdC NONE
CCO40_RS04200 NONE
CCO40_RS04205 NONE
CCO40_RS04210  870053 ..  870070 +  -4.9  -2.93747   GAGTAAAATACAGAA             TTCAGGCG GGA CGC-TGAA             TGTATGGCCTTTCAT  50 126
        rcnR  871444 ..  871467 + -12.5  -3.88396   GATTCTTATATAAAA          TAGCCGGGA GTTATA TCCCGGCTA           TCTTTTACTTTAGCC 100 23
CCO40_RS04235  874305 ..  874318 +  -2.4  -5.41143   AGCGTCATTTCCTTT               GTGA TAAAAC TCAC                TTTTTTTAAACAATC  77 60
CCO40_RS04240  875790 ..  875826 + -14.5  -4.08216   AACCGCATACAGCAT    CTGGCGCACATGTCTGA AAA TCAGACAAGTGCGTAAG    TTTTAGCGCCGATCG 100 244
        kduI NONE
        kduD  877718 ..  877735 +    -7  -5.69473   AAAAAACTGATAAAG             CCCTGT CCTCGT ACAGGG              TTTTTTTATGATCTC 100 87
        araE NONE
CCO40_RS04260  880671 ..  880681 +  -4.6  -3.71848   ATTTAGCGTTAGTAA                 CTCG GTA CGGG                 TTGTTCCTGCCGGGG  55 447
        lysA  882785 ..  882820 +  -9.7  -2.86164   GCGGGATGCGTAATC   CGGC-CTG-GCGCAGCG CTTT TGCCGCGCCCAGCGCCG    TGTCATCATTACAGG  65 274
         aas NONE
        lplT  888855 ..  888865 +  -2.4  -4.62302   GCGATATCGACGTAG                 GCGG CAA CGGC                 TTTTTGCGCCTGTTC  65 326
        rppH NONE
        ptsP  895464 ..  895488 +  -9.2  -3.37354   TTATTCGCACCTTTG          GAGCGTCTGC AACGC GCAGGCGCGC          TTATCAATCGCTATC  71 167
         lgt NONE
        thyA  897236 ..  897255 +  -7.1  -5.81032   ACGATCCTGCCATAA            CCGACGT CATCGC GCGTCGG             TTTTTTTTACCCTTC 100 47
CCO40_RS04335  897853 ..  897880 +    -4  -3.37796   GCGAGCGTAATGAGG        CCGCCACGTG TCAATAAC CACGCGGGGG         TTCTCGCTACTGGAA  50 9
CCO40_RS04340 NONE
CCO40_RS04345 NONE
CCO40_RS04350 NONE
        recC NONE
        ptrA NONE
        recB NONE
        recD  911020 ..  911053 + -10.3   -3.8512   ATGATGCTTTCGAGC     GTAGGCCTGATAAGCG CAG CGCC-ATCAGGCCTCC     TTGTTATCCTAAATC  80 90
        amiC  913960 ..  913973 +  -8.1  -3.41636   ACAGATACAAAAAAA               CACCC GTAA GGGTG                TTCATTAAGTTGGTT  65 111
        mltA  915436 ..  915454 + -10.3  -5.88565   AAAATAGTGAGCAGG             GGTGAGG AATAA CCTCACC             TTTTTTTATTCTGAG 100 96
        tcdA  916713 ..  916735 +  -2.9   -2.9348   ATAATGTTTCAATCG          TTATCGATGT CATC ACATC-ATAA           TGTATAAACTTTCGC  42 457
CCO40_RS04415  919610 ..  919629 + -10.7  -2.57423   GTTATACAAAAAAAA            GCACCGC AATATG GCGGTGC             TACATTAATCACTAT  74 47
        gcvA NONE
CCO40_RS04425 NONE
        rlmM  922364 ..  922396 +  -5.6  -3.30771   ACGAGCGATAAAAAC     GCGCTGCCGTCATCAG CGC CGGATGGCG-CA-CGC     TTATCCGGCCTATGA  56 30
        fucA NONE
        fucO  930777 ..  930789 +  -4.9  -3.95073   CAATATCGCGGCAAA                GAAAT GCC ATTTC                TTTATGCGTCTCAAG  60 194
         syd  937977 ..  937988 +    -3  -2.95093   AATGTTTTTGCGCAC                TTTC ATAT GAAA                 ATTTACTTAAGGTAT  42 157
CCO40_RS04500 NONE
        truC NONE
CCO40_RS04510  940351 ..  940363 +  -3.3  -5.01535   TGTTGCACGGTGAGT                GTGTG TGG CGCGC                TTTTTATACTTCTCC  76 340
        gudP  941854 ..  941865 +  -4.4  -2.64099   TATTGAACTGAAACC                TGTC GCAG GACA                 ATTATCATGACAACG  46 4
CCO40_RS04525 NONE
        gudD  944578 ..  944603 + -15.5  -3.54436   TGGTGCGTTAAGTCA         GAGCCGGTTCC GTAA GGAACCGGTTC          TTCTCTGGGTGTATG 100 30
CCO40_RS04535  946202 ..  946238 +    -5  -3.85698   TAAATTCAGCTGGTT   CC-GGCGCCATCAGGCGC GCT GCTAC-GTTGGCGCCAGG   TTTATAGCGCAGCAA  61 434
        rlmD  949953 ..  949979 + -10.9  -2.52464   CGCATGTAATGATTA        CC-GGCTTACCG ACTT CGGTAGGCCTGG         TCCCTTAAGGAGAGG  74 32
        relA  952289 ..  952319 +  -5.5  -4.63184   GCAAAGCCGCATTAG       CAAACCCCATA AGCATGAGA TATGGGGTATG       TTTTTGACGTACATT  74 82
CCO40_RS04555 NONE
CCO40_RS04560  953202 ..  953215 +  -2.5  -3.60597   GGTAAAAATAGGTCA               TAATA AAAA TATTA                TATTTCTACATTTCT  50 292
        mazG  954578 ..  954588 +  -4.6  -2.88788   CGTCAAAAACATTTA                 CCTC AAA GGGG                 CTATTTTCTCCCTCC  48 100
        pyrG  956383 ..  956406 + -13.9  -4.08164   AAAAAGTTAGAACGG          CGGTGCACC CTCAGC GGTGCACCG           TTTGTCTGAAGTTTT 100 40
         eno  957777 ..  957790 +  -9.5  -5.77988   CTCTTAACGTATAAA               CCCGC TTCG GCGGG                TTTTTTTGTATCTGT 100 53
        queE  958752 ..  958765 +  -3.8  -4.06533   TTTTTGCATCAAAAT               CAGC AAATTA GCTG                TTCTTTAATAATTTA  59 221
CCO40_RS04585  961419 ..  961434 +  -5.4  -3.36492   CATAAACGAGTGTCC              GTGCAGG CGG CC-GCAC              TTATGCCCTTCAGGC  53 386
        cysJ NONE
        cysI  965451 ..  965462 +  -3.6  -2.99471   GGGAATAACCTGAAT                TGCC GGAT GGCG                 TCTGTGTAGGCCTGA  45 33
        cysH  966295 ..  966311 +  -9.4  -4.32804   TGCTGCTATGAAAAA              TCCGGC AGGCA GCCGGA              TTTTAAATTGGTTAT  86 67
CCO40_RS04615 NONE
        casA NONE
        casB NONE
       cas7e NONE
       cas5e NONE
       cas6e NONE
       cas1e NONE
       cas2e  976357 ..  976369 +  -4.1  -4.41114   TAAGGAATTGTTATC                TTACC GTT GGTAG                TTTGTTATGTAGTAA  64 60
        cysD NONE
        cysN NONE
        cysC  982528 ..  982545 +  -9.8  -2.79831   GATCCTGAGACACCA             CCGGGC TTGTAT GCCCGG              TATGGTCAAGGTTAC  69 33
CCO40_RS04675  982979 ..  983005 + -13.8  -2.57344   CGGGTATACGTAACA         TCCGGCAAATGT GGT ACATTTGCCGGC         GTTGTCGCGGCAATC  86 110
        ftsB NONE
        ispD NONE
        ispF NONE
        truD NONE
        surE NONE
CCO40_RS04705  987103 ..  987126 +  -6.8  -3.21912   TGGGTTAAGCGTATC          GTGAACAC ATTTTCCC GTGTTCAC           TTAATGCGTTGCACG  59 116
        nlpD  988369 ..  988381 +  -3.3  -3.35996   CGTCAAGGGATCACG                GGTAG GAG CCACC                TTATGAGTCAGAATA  48 73
        rpoS  989383 ..  989426 + -14.8  -4.27117   CGCGAGTAAGTACCC TTGTCAAAAAAAGGCCAGTC TGTC GACTGGCCTTTTTTTTACCG TTTGTCTTCTGCCAG 100 32
CCO40_RS04735  992264 ..  992277 +  -9.5   -3.2661   AAGATGATGACGTAA               GCGGC TTGC GCCGC                TTCGCTATTGTTTGG  72 26
CCO40_RS04745  994144 ..  994157 +  -2.3  -2.74999   CTCTGCCTGGCGTCA               CGCCT GAGG AGCCG                TCATGTTAAAAATTG  40 3
CCO40_RS04750 NONE
CCO40_RS04755 NONE
CCO40_RS04760 NONE
CCO40_RS04765 NONE
CCO40_RS04770  999606 ..  999626 +  -3.9  -4.04174   CAGCGAGCGCGCGCT            GTCGACAGA AAT TTTGCCGGC            TTTGCTTATCTCCAG  58 310
CCO40_RS04780 NONE
CCO40_RS04785 1001983 .. 1002022 + -21.6   -3.5394   AAAAGCCTGTTCCGG  CGCG-CAGACCCGATAGCG CGG CGCTATCGGGTCTGACACG  TTTACACCAGACTTT 100 40
CCO40_RS04795 1005280 .. 1005292 +  -2.6  -4.03885   CGAGTAACTACCTGC                GTCG GATTA CGGC                TTCGTTTTTTTGGCC  56 34
CCO40_RS04825 1008860 .. 1008875 +  -6.2  -3.63569   CCAGCTTTCGCTGAT              TCAGAA AACA TTCTGA               TTGTTAAAGGCTTAC  60 332
        invF NONE
        invG NONE
        invE NONE
        invA NONE
        spaK 1016896 .. 1016911 +  -3.2  -2.85078   TAGTCGGTCGCTAAT              GAGATG AAAA CACCTC               GTTTACTGCAATATC  44 19
        invC NONE
        spaM NONE
        spaN 1019616 .. 1019630 +  -2.1  -3.12351   ATCTGGCGAGGAGGA               TGACG CCTGA TGTCA               TTGCGTGTGAGACAG  42 16
        spaO NONE
        spaP NONE
        spaQ 1021481 .. 1021500 +  -3.6  -2.76037   CTGGCGTTGGCTAAG            GGGTAAAA AATG TTTTACGC             GTTGTACTTTGAAAT  43 20
        spaR NONE
        spaS 1023394 .. 1023404 +  -2.4    -3.767   TGAATGTTCACTAAC                 CACC GTC GGGG                 TTTAATAACTGCATC  51 81
        sicA NONE
        sipB NONE
        sipC 1027024 .. 1027080 +  -7.9  -3.34806   GCTTAATCTGAAAGG TCATCTATACGCCATCATGGGTGTGAT TTA ATCGCGCTCCTGATGGCGAACTGGGGA TATTATGCTTAATAT  65 35
        sipD NONE
        sipA 1030173 .. 1030187 +  -2.1  -2.60075   TTACTACCGTTGATG              GCTTGC ACAT GCA-GC               GTTAATTAACCGGGA  39 6
CCO40_RS04935 NONE
CCO40_RS04940 1030756 .. 1030767 +    -3  -2.90075   AATTTGAAGAAGCAA                TCTT ATAA AAGA                 TATAATTCAAGAGGA  42 18
        sicP 1031554 .. 1031565 +  -4.4  -3.61398   AAGCTGCTGACTAAG                GGTT TATA AACC                 TTATTAAGAGCAAGG  55 397
        prgH NONE
        prgI NONE
        prgJ NONE
        prgK NONE
        orgA NONE
        orgB NONE
CCO40_RS05000 1041527 .. 1041539 +  -3.3  -3.17982   AAAGAGGCAATTGAC                TGGTG AAC CCCCA                TTGCTGGCGATTTGT  46 20
        hilC 1042751 .. 1042763 +  -6.3  -2.96307   TTAGCTTTATGCGTA                CAATG AAC CATTG                ATTTGTGAAATTATT  55 12
        sprB 1044007 .. 1044025 +    -6  -3.90048   AGGTGGTTGGTAGCC             TGGCTCAA TCA TTGAGGCA             TATTTTTGCAGGCAA  66 128
        avrA 1045404 .. 1045415 +  -2.2  -2.77043   GCAGTAGCGTGATAT                TCAG CCCG CTGG                 CTTTCGCCTGGTGCG  39 456
CCO40_RS05040 1049167 .. 1049177 +  -2.4  -4.25104   TTAAGCCCCAGACGC                 TGCG CCG CGCC                 TTTTGGTCCAGCCAC  60 163
        hycA 1055771 .. 1055801 +    -9  -3.65542   CGTTGCCCGCTTTGA       TTCGCGATGTGGCG TTG CGCCATGTCATGAA       TGTTTTGGGGATGGG  75 49
        hycB NONE
        hycC NONE
CCO40_RS05090 1059232 .. 1059250 +  -3.7  -2.90992   TGCGTTTTTAGCCTT             CGTCTCC TTGCT GGCGGCG             TGATTTAAGAGAGTT  46 4
        hycE NONE
        hycF NONE
        hycG NONE
CCO40_RS05110 NONE
        hycI 1063163 .. 1063178 +    -4  -2.60615   GCTGGAAGCGCCGGA              G-GCGTA AAA TACGCAC              ATATTTAGGGAGAAT  44 19
CCO40_RS05120 1064071 .. 1064083 +  -7.7  -3.31144   CACTGGCGACATTAC                GTGTC ATC GACAC                TTGTGACGATGACAC  65 91
        hydN 1064799 .. 1064810 +  -5.8  -3.34962   GCATTGCCGGATGGC                GGCA TCAA TGCC                 TTATCCGGTCTACGG  56 73
        hypF 1067620 .. 1067646 +   -10  -3.54424   CGCCGCGGTTGACGG         CTACTCCGGCGC GGC GCGCCAGAGCGG         TTTCCGGGCGTAAGC  71 508
        norR 1071550 .. 1071563 +  -2.3  -4.25104   GCAGGTTAATGGCGC               CGGTG AGTT TGCCG                TTTTCATCGACCACC  60 66
        mltB 1077909 .. 1077933 + -10.8  -3.88601   GCGCTAATTTACGCT         TAG-GGAGGGG AGCC CCCCTCCGCTA          TTATTATGGCTTTTG  86 34
        pncC 1078876 .. 1078895 +    -8  -2.84098   CTACAAAACACTTGA            TACTGTAT GAGC ATACAGTA             TAATTGCTTCAACAG  61 26
        recA 1080088 .. 1080107 + -11.4  -4.26189   TTAAATTACCATCAA            GGGCTGCA TTTA TGCGGCCC             TTTTGGCATTTCTCC  93 92
        recX 1080693 .. 1080739 +  -2.9  -3.25652   CTTATTCCCACTTTT TCCGTC-TGGACGCGGGTTGCT TAAC GGCGAACAGCGTCTGCGACGAA TATTCCTTAAATACA  45 80
        alaS 1083522 .. 1083543 + -17.3   -3.6502   ATAAGCGTTCGTTGG           CGCCGCAGC CCAT GCTGCGGCG            TTTACGTCAACGCTA 100 43
        csrA 1083950 .. 1083964 +  -4.2  -3.35679   TCTCACTTTTCGGGT               GAGACG CAG CCTCTC               TTCTCGCTCGCCCGC  50 51
CCO40_RS05215 NONE
CCO40_RS05220 1084392 .. 1084402 +  -5.4  -3.27029   GTTCGAATCCTCCCG                 GATG CAC CATC                 TCTTACTTGATACGG  54 17
CCO40_RS05225 1084530 .. 1084540 +  -5.4  -3.27029   GTTCGAATCCTCCCG                 GATG CAC CATC                 TCTTACTTGATACGG  54 17
CCO40_RS05230 1084803 .. 1084813 +  -5.4  -4.04806   CGAGTAATCCTCCCG                 GATG CAC CATC                 TTATTTAGTGTGGCA  65 151
CCO40_RS05235 NONE
        yqaB NONE
CCO40_RS05245 1086324 .. 1086341 +  -3.5  -2.76171   ATTGTAGGTTTGGCA             TGT-ATGG CCG CCATTACA             GTTATGCTTATTAAA  43 43
        gshA 1088040 .. 1088056 +  -2.2  -4.85782   TACTCAGACTCGCCC              CGGAAC AAAGA GTTCAG              TTTATTTTTAAAAAA  66 126
        luxS 1088639 .. 1088657 + -10.2   -5.5604   CAGTATTTAAATTAA             CCCCGGTT TAT GGCCGGGG             TTTTTTATTGCTTAA 100 60
CCO40_RS05260 1090340 .. 1090355 +    -9  -4.41206   TGGTTTACTAAAAAA              GGGATC CGCA GATCCC               TTTTATCAGATAGTT  85 45
CCO40_RS05325 1105268 .. 1105279 +  -7.2  -3.16564   CGATAAAAATCCCCA                CCGC TGCG GCGG                 TTCCTACGCTACACC  59 150
CCO40_RS05335 1106067 .. 1106094 +   -12   -3.2496   AAAAAAGCGACTAAA        AG-CGCGACTGGC AAT GCCAGTCGCGACG        TTAACTTATGCCTTA  83 27
        stpA 1107791 .. 1107801 +    -4  -4.59109   GTGACATCTGCCGCT                 TTGA GGA TCAA                 TTTTTCGCCCGTCTC  69 167
CCO40_RS05365 1109188 .. 1109205 + -14.1  -3.31263   AATTACCGGCCACCG             GCGGCGC ATAA GCGCCGC              TTATCAGGATAACCT 100 39
        lysM 1109786 .. 1109805 + -13.6  -2.62192   GAATAATGGGAATCG            GCGTCAGC AAAT GCTGACGC             ATTAATTCGCTGGCG  78 88
        tctD NONE
CCO40_RS05425 1122556 .. 1122577 +  -2.9   -4.2717   AGCACGTTTACAAAA           AGTCGCATC TTGA GGTGTGACG            TTTTAATCAAATGAT  58 65
CCO40_RS05430 1123684 .. 1123714 +  -9.8  -2.59876   TCTTTAAAAATAACA       TTTCGGCAGTGGTG TCA TATCATTGCCGAAG       CATTTTATCTCCTGA  68 47
       pipB2 NONE
CCO40_RS05450 1128594 .. 1128630 + -17.5  -4.07687   TGATGGTTTTCAGTC    TGCAAAGCGCCTGATAA ATA TTACCAGGCGCTTTGTA    TTTTGGCGCCAACAT 100 38
CCO40_RS05455 1131293 .. 1131315 + -17.8  -3.29043   CTCGTTTTGATGGGT           TATGCCCGCC GCT GGCGGGCATA           TTCTGGCGACGGGTT 100 31
CCO40_RS05485 1141660 .. 1141677 +  -9.8  -4.99134   ATTTCGTTTTATTCA             GCCCCG TGAATT CGGGGC              TTTTTCATTTAGCAT  93 44
        fljA 1142492 .. 1142505 +  -3.1  -3.42548   GCAGTTACACTATTG               TCGTC TGGT GATGA                TTACTCTTCATTCAT  50 269
CCO40_RS05500 NONE
CCO40_RS05505 1147094 .. 1147109 + -11.8  -2.80016   TGACCTGATTCACAA              GCGCCC TGTT GGGCGC               TCATTAGTAATGGGA  79 33
CCO40_RS05520 1151454 .. 1151473 +  -8.6  -3.43071   GAAAGCATCGTTATG            GCCCATAT ATTC GTATGGGC             TTGGTTGATGTGCAA  71 222
        ptsG NONE
CCO40_RS05545 NONE
        hxlB NONE
        hxlA 1161193 .. 1161214 + -13.7  -2.93783   CATCACTGAGGTGAA           GGCGCAGGG GGAA CTCTGCGCC            TGATTTCACACTTTT  87 32
CCO40_RS05590 1166588 .. 1166627 +  -5.8   -4.5536   AGGTGGTTTTTTTCT  GAAAAATACACCATTTCG GTAT TGAAACGGTGTATTTCGC   TATTTTTTTTGAATG  72 115
CCO40_RS05615 1173265 .. 1173283 +    -6  -3.41602   GTTGCTGTATCTTAT             CTCTGC AAGCGCA GCAGAG             TTATAATCAACTGAA  56 393
CCO40_RS05665 1195304 .. 1195323 +  -5.8  -3.51825   GTTCGCGCCAAAGAG            GTTTA-CCG TGC CGGATAAAC            TTGTGGTTGAAGTGG  57 8
CCO40_RS05670 1195773 .. 1195783 +  -2.4   -3.1997   ATCACAAAATTACTT                 CGTC AAC GCCG                 GTTTGTTATCAATAT  44 197
        grpE 1199601 .. 1199621 +    -9  -5.53288   GAAGTAAAAGTCTGA            TGGCCGAT GTAAA GTCGGCCA            TTTTTTTAGCTTAAA 100 34
         ffh 1204237 .. 1204264 + -13.4  -4.43307   GCTTTTAATATGACG        CCGGGCTCCGTT CCTC GATGGGGCCCGG         TTGTTTTATTCACAC 100 285
        rpsP NONE
        rimM 1205088 .. 1205098 +  -2.4  -3.33744   TACTATCGAAGTAGA                 CTGG GAT CCTG                 GTTTTTAAACCACCG  45 7
        trmD NONE
        rplS 1206347 .. 1206369 + -10.5  -5.27923   GCTTGTAGAAAAGAA           GGGGCTGGC ATTAC GCTGGCCCC           TTTTTTATGGGGTTG 100 66
        aroF 1209700 .. 1209716 +  -2.3  -2.52933   TGGCGGTGCGCGTCG              CATAAGA GGT TGTTATG              GTTGCTGAATTGACC  39 21
        tyrA 1210856 .. 1210870 + -11.4  -5.37593   ACATCTATACTAAAA               GCCAGC TTT GCTGGC               TTTTTTCGTTTAAGG 100 46
CCO40_RS05755 1212176 .. 1212202 +  -4.3  -4.67353   GCTGCCGAGCGCCGC         GACGCGCGG AGAGTTTGC CTGCGCGAC         TTTTTCCATCGCTGC  71 400
        rluD NONE
        yfiH 1216433 .. 1216447 +  -5.7  -3.83998   TTCACCTTGAATAAT               TGAGG GATGA CCTCA               TTTAATCTCCAGTAG  61 98
        clpB 1219083 .. 1219100 + -10.5  -5.27335   CAAATTTGAATAAAA             CGGGCCC TGAC GGGCTCG              TTTTTGTTTAAAAAC 100 45
CCO40_RS05795 NONE
CCO40_RS05800 1221255 .. 1221290 +  -9.2  -4.00532   AGTCACCTGCCTTAA    TATCTCAAAACTGACT TACG AGTCACGTTTGAGATA     TTTGCTCTTTAAAAA  79 61
CCO40_RS05805 1224598 .. 1224611 +  -5.3  -3.64703   GTGTAAAAGATTCGT               TTCTG GCAA CAGAA                TTTGCCTGGCGGCAC  57 205
         rrf 1224743 .. 1224774 + -17.4   -5.1634   AGGCATCAAATAAAA      CGAAGGGCCCTGTC GGAA GACAGGGCCTTTTG       TTTTTGTCTGTTTCT 100 37
CCO40_RS05815 NONE
CCO40_RS05820 1226940 .. 1226966 +  -6.6  -3.19463   TCAAAGAAAACATCA        GCCCT-ATCGC TGCGCT GCGGTCAGGGC         TTACTCCCTGGTGAC  56 165
CCO40_RS05855 1233769 .. 1233798 + -13.5  -2.76361   AAAGCGTAAGGGCTG       CAGCCCGGTGACGC AAC GCG-CGCCGGGCCG       ATTATGTACTTCCTA  86 32
        grcA 1235290 .. 1235314 + -16.5  -5.34857   ATCCGGTAATAACAA          GCGGAAGAGGC CGG GCCTTTTCCGC          TTTTGTTTTATTTGG 100 46
CCO40_RS05875 1236910 .. 1236931 + -14.5  -3.44206   TGGAAGATAAAAAAA           TGCCGGGTT AACG AACCCGGCA            TTATCATCACTCTTC 100 15
        trmN 1239209 .. 1239221 +  -3.3  -3.36991   ATCCAGCGTAAAGTG                CAGCC CCC GGCTC                TCTTTACGCATCATC  47 94
        rseD NONE
        rpoE NONE
        rseA NONE
        rseB NONE
        rseC 1243925 .. 1243935 +  -4.6  -3.63744   AAACATGCGCTTTTC                 CTGC GTT GCGG                 TGTTTTACAGGAAAA  55 88
        lepA 1245928 .. 1245940 +  -3.4  -3.64609   TCCCTAAGGAGTTGG                CATG GCGAA CATG                TTTGCCCTGATTCTG  51 41
        lepB 1246921 .. 1246953 + -17.2    -4.015   GTGACGAAATGATCG     TTCACGCTGCCGTCT TTTT AG-CGGCAGCGTGAA      TTATTTCCTGGATAA 100 43
         rnc NONE
         era NONE
        recO NONE
        pdxJ NONE
        acpS 1251051 .. 1251076 +  -3.3  -4.39329   ACGCCTATTTTCTGC         TCGG-GCCAG CTCTTTT CTGGCGCTGA         TTTGTTATCTACAGT  62 454
CCO40_RS05965 NONE
CCO40_RS05970 1254216 .. 1254244 +  -9.6   -4.0896   GCGCAATAAACTTGA        TAGCTCTTCTGC ATGAG GCGGAAGAGCCA        TTTTCAAACCAGTTT  81 32
        murQ NONE
CCO40_RS05985 NONE
        yfhb 1258120 .. 1258132 +  -3.3  -3.02471   CAGCTCGAATAGTGA                AACGC ATA GCGTC                TGTGTATAATGCCGC  45 29
        tadA 1259014 .. 1259024 +  -3.2  -4.74103   CCGTAGGTTAGCTTA                 CTGT AAT ACGG                 TTTTTGGCTTAACAG  70 347
        purL 1264450 .. 1264468 + -11.7  -5.24129   CCCGATAGCCATTAA             GCCCCTC TTCAC GAGGGGC             TTTTTTGTAGACGGC 100 45
        qseE NONE
        qseG NONE
        glrR NONE
        glnB 1269525 .. 1269536 +  -5.8  -3.36991   CAGACGCGCAGCACC                GAGC GGGC GCTC                 TCTTTCGGGCTGCTC  56 525
CCO40_RS06060 1279068 .. 1279106 + -12.5  -3.69621   ACTTATGCGCCATAA  CG-TGACGCCGCCGGA AGTCATTA TCCGGCGGCGTTGCCG   TTTGAACTTCTCCCT  95 90
CCO40_RS06065 1280461 .. 1280473 +  -4.7  -4.57073   TCAGCGCTACGCCGC                GCGGG CAT CCCTC                TTTTTGAAACGCCTG  71 148
CCO40_RS06075 NONE
CCO40_RS06080 1283616 .. 1283628 +  -9.1  -4.77438   GAGGAAGAGCTTGCC                GACGC GCG GCGTC                TTTTTACTGGTGCGT  93 290
        trmJ 1289139 .. 1289152 +  -3.9  -2.71681   TAAATACCTGACTAA               TTTAC TCAA GTAAA                TAGTTGACCAAATTA  45 65
        iscR 1289899 .. 1289922 +  -2.4  -2.72144   AGCCGGTTGCCTGAT          TCCTTGCATT GAGT GATGTACGGA           GTTTAAGAGCAATGA  40 171
        iscS NONE
        iscU NONE
        iscA 1292052 .. 1292078 +  -8.7  -4.30719   AGTAAGAAGGTATAA        CCCCAC-CGTGG TCGC CTGCGTGTGGGG         TTTGTTCTGACAGGC  84 163
        hscB NONE
        hscA NONE
         fdx NONE
        iscX 1295240 .. 1295261 + -15.1  -3.78775   TAGCAAAAGATCTAA           CGGGCTGCC CTAC GGCGGCCCG            TTTGCTAATAAGGAA 100 228
        pepB 1296583 .. 1296608 + -11.1  -3.12395   ACGGTGTTTTTGTAG         GCCGGGTAAGCG AAG CGCC-ACCCGGC         ATTTTGCCTGATGGC  76 41
        sseB 1297915 .. 1297930 + -10.4    -5.626   ACCAGCACAAAAAAA              CCGCTC AATT GAGCGG               TTTTTTTGTGGCCTG 100 478
CCO40_RS06170 1299174 .. 1299186 +  -9.1  -3.53012   CTCATACACCAGTTC                CGTCC ACG GGACG                TTTAGCGCGCCAGGA  68 233
CCO40_RS06180 NONE
        pbpC 1307289 .. 1307305 +  -3.1  -4.60255   TCATTTAATTTAAAG              TTAATGA GAA TTATTAA              TTTTTCCGGAATTAT  66 67
CCO40_RS06190 NONE
        dmsB NONE
CCO40_RS06200 NONE
CCO40_RS06205 1312097 .. 1312107 +  -2.6  -3.09878   CTAATGCTCATTTTA                 TTTT AAA AAAA                 TGTTACCTGCATCCA  43 50
         ndk 1312741 .. 1312773 +  -4.1  -5.04249   ATTTGTACAATGCAG     CGCCCCCGGACGAGC AGTAA GCTTA-CC-GGGGCG     TTTCTTTTTTCAACC  76 142
CCO40_RS06215 1314170 .. 1314180 +  -6.8  -3.50045   GTTTTGTCATCTGCG                 GCCT GAC AGGC                 TTATACTGTCTGACT  62 198
        rodZ NONE
        ispG 1316447 .. 1316467 + -13.3  -3.00298   AAAATAAGAACGTGA            TGGGAAGCG GCG CGCTTCCCG            TGTATGATTGAACCC  86 34
        hisS NONE
CCO40_RS06235 NONE
        bamB 1319673 .. 1319693 + -11.1  -4.60746   GTGCGTTTTAAAAAA            CGGCTCCTG GTG TAGGGGCCG            TTTTCCTGTTTTTAA  95 52
         der 1321257 .. 1321284 + -10.6  -3.60296   TTCAGTAATATTCCA        GGCCTGACAAGCG CTA CGCTA-TCAGGCC        TTTCAAGTAAAAGTG  83 47
CCO40_RS06250 1321646 .. 1321656 +  -4.6  -4.59946   TATCAGCATAGTATC                 CTGC CCG GCGG                 TTATTTTATTCTTTT  71 126
        sinH 1324086 .. 1324116 +  -6.9  -2.71712   TAGCCAGAAATAGCG      TCAGCGTTATGGCT GACC AGCCA-GCCGCTGA       ATTTGGAGAAAAAGG  55 28
CCO40_RS06260 1325126 .. 1325149 + -15.4   -4.0896   AAGTTGTCCTCAACA          TACCACTCCC CGCG GGGAGTGGTA           TTTTCCGCGCACTTT 100 39
        ratA 1330859 .. 1330899 +  -5.3  -2.53263   GGGGCCGGGAGCGCA  TTTGAATGTTGGGTGACGC TTT GCGTCGCCCAACCTGGGTA  TCCCTTGCGGCTGGC  48 46
CCO40_RS06270 1331236 .. 1331249 +  -8.1   -4.0641   TTAGGCTGGCCGACG               CAGGG CTAT CCCTG                TTTATCTAAATCAAC  74 37
        shdA 1338044 .. 1338066 + -12.7  -4.12188   AAGTGAGCGACAAAA          CCGGGC-GGG TATT CCCAGCCCGG           TTTTGAGGCTAATGA 100 39
        guaB 1341177 .. 1341200 + -13.9  -4.56113   GGCTCCTGATTTTCT          TCGCCCGAC CTTCGC GTCGGGCGA           TTTATTTAATCTGTT 100 32
        guaA 1342866 .. 1342885 +   -10  -5.42975   TAAAAGTGAATTTAA            CCCTCTGT TTTT GCAGAGGG             TTTTTATTTATGTGC 100 74
CCO40_RS06315 1344876 .. 1344887 +  -4.4  -2.90797   TTTAATAATTACAAT                CGAT GACT ATCG                 TGTGATGTATATCGC  48 20
CCO40_RS06320 1347291 .. 1347301 +  -3.2  -4.41633   CCAGTTACCGCTTCC                 CAGT ACT GCTG                 TTCTTTTTCCAGATC  64 125
         upp 1353762 .. 1353780 +   -11  -5.81412   AATAAATAATTAAAA             GCCGACTT TAA GAGTCGGC             TTTTTTTTGAATAAA 100 44
        uraA 1355128 .. 1355148 + -18.3  -3.58726   ATCAGTAACGGGTTG            CCGGGCAGC GAT GCTGCCCGG            TTCTATCTCAAGGGA 100 33
CCO40_RS06355 1356032 .. 1356060 +  -8.1  -3.09327   GCTCCATCAGTTTAG        GGTGTTCAACCAG CGC CTGGATTAACGCC        TCTTCACTCAGCTGG  60 141
CCO40_RS06370 1359189 .. 1359208 +  -9.3  -5.18726   CGCTCTTTTTTTTAA            TGCCGCA CCGTGT TGCGGCA             TTTTTATTGTCGGAA 100 134
        dapA NONE
        bamC 1362792 .. 1362811 + -11.4  -5.31275   ACAAGTAATTTAACA            GGGCTGGA GCAA TCCGGCCC             TTTTTTCTGATAAGA 100 33
CCO40_RS06400 1363685 .. 1363706 + -11.5  -2.90054   TAATTCCGCTTCTGA           CCGGGGGGC AACC GCTCTCCGG            TATCATCCTTTCCTC  78 38
CCO40_RS06405 1364675 .. 1364686 +  -2.2  -2.64735   CTTTTGATAAACCGG                GGCA GGGA TGTC                 TGATATCGATGCGCT  39 34
        tmcA 1366689 .. 1366718 + -14.4   -3.3858   CCCGGCGGTGGGGAC       CATGCCGGATAG CGATAC CTGTCCGGCATG        TTATCCGGTTACTTT 100 14
        ypfM 1368955 .. 1368975 +  -8.3  -5.24129   TAGGGGATAAGAAAA            GGCGACT CAACGAA AGTCGCC            TTTTTTGTGCCCGAC  95 51
        aegA 1376288 .. 1376300 +  -9.1   -3.5393   CGATAAACATTTTCC                CGTCG GGT CGACG                TTTAACAGGCCTGAT  73 152
        nudK 1378682 .. 1378693 +    -3  -3.53012   TGGACTGAAAAAAAA                GAAA TATA TTTC                 TTTACACAAAAAAGA  48 33
CCO40_RS06460 1379823 .. 1379838 +  -5.4  -3.11955   CGGATGCCTGGCCTA              CGCTGTG GAT CAC-GCG              TTGAATCCTGGTTGT  52 6
CCO40_RS06465 1380282 .. 1380292 +  -2.4  -4.87273   CCTTTGATGTTTAGC                 ACCC GGC GGGC                 TTTTTCTACAATATT  66 107
        maeB 1385807 .. 1385824 + -12.7  -5.60993   TTACTCTCTCTTCTG             GCGCAGG TTCT CCTGCGC              TTTTTTTATGCGCCG 100 48
        eutS 1386522 .. 1386536 +  -2.9  -3.15861   TTTACCCTGTGTGAG               TTAAC AAAAA GTTAA               TTGGTGGCGGTAATG  45 11
        eutP NONE
        eutQ NONE
        eutT NONE
         pta 1389510 .. 1389527 +  -2.6  -2.83403   CACTGGTTGAATGAA             CGGTCC CGTTCT GGACCC              CTTTAATGAGAGGAA  41 27
        eutM NONE
        eutN NONE
CCO40_RS06520 1391636 .. 1391646 +  -6.8  -3.48924   ATGCGTGCTGGTGGA                 TGCG TTT CGCA                 TTGTATAAGGGATGA  62 7
        eutJ NONE
        eutG 1393748 .. 1393759 +  -5.8  -3.33261   GTTAATGCCGGAGGC                GACG TAAA CGTC                 TTATCCGGCTTACAA  56 92
        eutH NONE
        eutA 1396418 .. 1396435 +  -4.1  -2.58544   GAAATCACTCGCATT             TCCTTCC TGAG GGAACGA              CTTATGAAACTAAAG  44 16
        eutB NONE
        eutC NONE
        eutL NONE
        eutK NONE
        eutR 1401273 .. 1401283 +    -4  -3.13403   AATTCCCTTCAATCA                 TGAT GCT ATCA                 TATTGATGCAGAAGC  48 307
CCO40_RS06585 NONE
CCO40_RS06590 NONE
CCO40_RS06595 1405489 .. 1405506 + -11.3  -3.68359   AATAGCCTCCATTAA             TGCCACG ACTG CGTGGCA              TTCTCATTTTCAGGA  87 81
        yfeX 1406530 .. 1406547 + -12.7  -5.48825   GCATAAAAATGCCCA             TCCCCGC CTCC GCGGGGA              TTTTTTTACCTAATA 100 128
        ucpA 1407467 .. 1407494 + -12.8  -3.84992   TCTGATTGATGCCGG        TCTCCTCCTCACG CCG CGTGGGGAGG-GA        TTCTCTTATTCCCTT 100 36
        cysP NONE
        cysT NONE
        cysW NONE
        cysA 1411448 .. 1411473 + -13.3  -5.02074   ATTTGTATAGTTATC         GCCCGGTG-GCG CTA CGCATACCGGGC         TTTTTTACGAGCTGA 100 48
        cysM 1412380 .. 1412399 +    -2    -3.727   GTTTGGTGAAGAGCA            TTTCAGCC AGGG GGCAGGGA             TTTAGATATGATCGC  51 1
CCO40_RS06635 1413287 .. 1413307 + -11.9  -3.06183   CTACTTTTTAAGCAA            CAGATCTGC CTG GCAGGTCTG            TTGCATGAGAATAAC  81 48
        pdxK NONE
CCO40_RS06660 1417129 .. 1417146 + -12.7  -3.67597   GTACAGGCAAAAAAA             TGGCGCC CAAA GGCGCCA              TTCTTCACTGCGGCA  95 137
        zipA 1423279 .. 1423295 + -10.8  -5.38249   ACATTTTTAACGTAA              CCCCCG CCTGT CGGGGG              TTTTTTATCATTGAT 100 57
        ligA NONE
CCO40_RS06700 1425706 .. 1425735 +  -4.1  -5.40072   ACGTCGGAAACAGAA       TATTGGCCATCGG GATC CCGTTGGCCAGGC        TTTTTTTCGAACCGC  86 177
CCO40_RS06710 1427597 .. 1427622 +  -9.7  -3.06815   GTGTGAGGTGCGGTC         TTGCCCTGCCA TTTT TGACAGGGCAG          TGTGTTAAAACAGGT  71 57
        xapA 1429492 .. 1429506 +  -9.2  -4.03234   AACACAATGACTACG               GCCCCG TAT TGGGGC               TTTATCTCACGGCAA  80 40
CCO40_RS06725 1430795 .. 1430824 +  -8.6  -4.82901   GCACATTAATTTTAT       TTGACTGGCGAG AGGATG TTCGCCAGTCCA        TTTTTATGAACAAGG  89 32
CCO40_RS06730 1430999 .. 1431009 +    -4  -2.82933   CGTTAAATCTATTTT                 TTAC TAG GTAA                 TATGGTAAATTCCAG  45 19
CCO40_RS06735 1432080 .. 1432094 +  -9.2  -5.17576   GCAGATAGCAAAAAA               GCGCCT TTA GGGCGC               TTTTTTACATTGGTG  93 164
        gltX 1434190 .. 1434218 + -13.3  -4.24413   CCAGCTGAAACAGAA        TAAACGGCAGG GCAGACG CCTGCCGTTTA        TTATTTGTTAGTCCG 100 43
CCO40_RS06775 NONE
CCO40_RS06780 1435407 .. 1435426 + -11.4   -5.2197   CCACCAACATTCAAA            CCCTCGCT GAAA AGCGGGGG             TTTTTGCTTTTTGTC 100 35
CCO40_RS06785 1437792 .. 1437809 + -12.7  -3.97368   AGCGGCATAAAAAAA             CCGGGGA TAGC TCCCCGG              TTTCTGCATTAAACC 100 40
CCO40_RS06795 1440634 .. 1440658 + -12.2  -3.38812   ACAGAAAGATAGCAG         GCCCGATG-CG TGGG CGTCATCGGGC          TGTTATTCAGCAGGA  85 43
CCO40_RS06810 1444250 .. 1444278 +  -9.6  -3.53444   CCGCCGCGAAAGCCG       CTCGCCGCCGC GATGACCA GCG-CGGCGAG        TTTGACGACGGCTAA  71 328
         glk 1446480 .. 1446496 + -13.7  -5.29385   CTTGTCAGTCTCAAA              CCGCGTG CCT CACGCGG              TTTTTTCATTGCCTT 100 134
        alaC 1448341 .. 1448360 + -13.6  -5.33026   GAGTAGAAAAGCAAA            CAGGAGCC CCAT GGCTCCTG             TTTTTCTTTGCATTG 100 35
CCO40_RS06840 1450769 .. 1450787 +   -16  -3.65812   GTCAGCGAATAGATA             GCGCCGAC AAT GTCGGCGC             TTCTGTTCCCCGGGA 100 255
        pgtC NONE
        pgtB NONE
        pgtA 1457105 .. 1457118 +  -2.4  -2.71364   CAATCTGGCTGACAA               CATC AGCAGC GATG                TCGTTAGCCAGATAA  40 56
        pgtE 1458291 .. 1458322 +  -8.7  -4.72986   TCTAGACCACATCGG      GATGTCATCGGTC ATAACC GGCCGATGACGAC       TTTTTGCTGAACGTA  89 36
        mlaA 1460590 .. 1460608 +   -11  -4.78764   GGCAGTAAATAAAAA             GGTGAGCG CAA TGCTCACC             TTTTTGATCCGTTTC  95 43
CCO40_RS06890 1462606 .. 1462642 +  -9.4  -5.66684   GTTAATCCGTTCATT    CACGACGCCTCCGTCA TCATC TGGCGGAGGCGTTTTC    TTTTTTTGTCGCTTC 100 36
        fadI NONE
        fadJ 1466356 .. 1466369 +  -3.1  -4.56597   ATGGATAAGGCACAA               TGCCGG CCA CCG-CA               TTTTTGCCGCAGCCA  64 151
        sixA 1467077 .. 1467090 +  -9.5  -2.84325   TCAACACCAGCAGCG               CGGCG TCGC CGCCG                TACTCTTTCGGCGCC  64 178
        prmB NONE
        aroC NONE
        mepA NONE
CCO40_RS06930 NONE
CCO40_RS06935 NONE
CCO40_RS06940 1472297 .. 1472324 + -11.2  -3.08798   CAATAACGCCGTGGG        CCGGAAGGCGAC GCTT GCCGCCTTCCGC         TATTGACTGACCCAT  79 35
        fabB 1475748 .. 1475767 + -13.6  -5.26875   GTATCAACAATGAAA            CAGGTCGC TAAT GCGACCTG             TTTTTTCATTCAGGG 100 60
CCO40_RS06955 1476578 .. 1476614 +  -4.4  -3.17219   TTGCTGACCAGGCCT   CAGCCTGGGTGATGGCG CCTG CGTCATAAATC-GGCTG    TTCATAACCCTTATC  49 136
CCO40_RS06975 1478522 .. 1478540 +  -7.3  -3.30453   TTCAGGTAGAGGGGG             GGCGTGG CATTT CCCCGCC             TTACTCTGCATTCTG  63 163
CCO40_RS06980 1479940 .. 1479954 +  -7.1  -3.58536   AATCCTGCACCTGGG               CGGTG GTCAG CACCG               TTTGCGGCTGAATTT  60 222
        pdxB 1481994 .. 1482023 + -11.5  -3.80279   TAATGTCTTCTTAAT       GC-TCCCTGTCGAA TAA TGCGACAGGGACGC       TTATGTATTTCTGGA  91 38
CCO40_RS06995 1483042 .. 1483059 +  -4.1  -2.62184   ATTGCGGAGAAGCTG             GTGCAGG AGTA TCTGTAC              TGATGTCCGGACAGC  44 5
        truA NONE
CCO40_RS07005 1484594 .. 1484606 +  -3.3  -5.24531   ATAGAAAGTAACTCA                GCGGT TCG ACCAC                TTTTTTATCCAAAGT  77 37
        accD 1485652 .. 1485684 + -17.1  -3.06515   TGAGGCCTGATAACT      GAAAAGGGCAGGGCC GCA GGCTCTGCCCTTTTG      CTTTTCACCGTAAAG 100 31
        folC NONE
        dedD 1487829 .. 1487854 +  -9.8  -5.27938   AGATAAAAAGTGTGA         TGGCGTTGAA TATTTT TTCAGCGCCA          TTTTTATTTACGCGT 100 208
        cvpA NONE
        purF 1490004 .. 1490035 +  -9.4  -2.54896   AACGAAGGCTAATGG      C-TTTGCCAGCGGCG CGA TGCCGCTGGCCGATG      TCAATTACGTACCAC  68 29
CCO40_RS07040 NONE
CCO40_RS07045 NONE
CCO40_RS07050 1495695 .. 1495719 + -14.9  -2.62613   ACGCGTTAACGCATA          ACCGCCGCGGC TAT GTCGCGGCGGC          ATCTTTGACCTCACG  89 32
CCO40_RS07055 NONE
CCO40_RS07060 1497787 .. 1497805 + -13.2  -4.37092   GCATTATTGTCCCTG             TTGCCCTG TTT CAGGGCAA             TTTTGTAACCGCGAT 100 58
        argT 1498863 .. 1498886 + -10.4   -4.7497   CTGGGGAACTATCAC          GGTGCAAAAT AGAT GTTTTGCACC           TTTTTGGTGCATAAG  91 63
        hisJ 1499952 .. 1499963 +  -7.2  -2.62184   CGGGCAAGGCACAGC                CGCC ATCC GGCG                 TGATGTGAGGCAAAA  57 132
CCO40_RS07075 NONE
        hisM NONE
        hisP 1502314 .. 1502326 +  -9.1  -4.07568   GAAATGCGAATCCGG                CGGCT TCA AGCCG                TTTTGGCAGCGCCCG  80 136
        yfcF NONE
        yfcE 1505290 .. 1505304 +  -2.1  -3.12402   ATGATCAAAGTATCA               TTGCG CAGGT TGCAA               TTAACTCGTAATTTA  42 0
        yfcD 1505957 .. 1505986 +    -8  -3.74224   TCCCGCATACATAAA      CTGGAGGCGAT-GG ATTT CCGATCGC-TCCAG       TTTCCCTGATTTAAC  68 56
CCO40_RS07120 NONE
CCO40_RS07125 NONE
CCO40_RS07130 NONE
CCO40_RS07135 NONE
CCO40_RS07140 1511198 .. 1511226 + -11.8  -4.20084   TAATCATGGAGATAT       TGCCGGATG-GCG CTGA TGCTCATCCGGCA        TTTTGGATCAATGAT  95 38
CCO40_RS07160 1517216 .. 1517235 + -10.8  -5.52384   ATTACGCATATAAAA            GAAGGCAT ACCA ATGCCTTC             TTTTTTTCATCGCCA 100 51
CCO40_RS07165 NONE
CCO40_RS07170 1518448 .. 1518465 + -14.1  -2.70946   CCTGATCATGATATC             GCCCCGC TTTG GCGGGGC              ATATTTATGGCAGAA  87 36
CCO40_RS07175 1520729 .. 1520750 +  -4.3  -5.10497   TCATCCGGCGCCATA           TCAACCAGC TTTT GCTGGGCGA            TTTTTTCGATCGCTT  80 414
        lrhA 1524263 .. 1524296 +  -9.6  -5.61596   CGTAAATGTAAAAAA     GAGCCGCTG-GCGAT GAAAA AACGCTCAGTGGCTC     TTTTTTTGTGCCCAT 100 64
CCO40_RS07195 1524746 .. 1524764 +  -2.4  -6.13503   GCTGTTTTTATCATT             TTCTACAG TAA TTGTAGGG             TTTTTTTTATTCCTC 100 315
        nuoA NONE
        nuoB NONE
        nuoC NONE
        nuoE NONE
        nuoF NONE
        nuoG NONE
        nuoH NONE
        nuoI NONE
        nuoJ NONE
        nuoK 1534841 .. 1534856 +  -2.5  -3.18199   TTCAGTAAGTGAGAT              GCGTG GATGAA CATGC               TTGCCTTAACCATTA  45 16
        nuoL 1536762 .. 1536780 +    -3  -2.80966   AAAGGAATAAAAATC             GCCATGTT ACT ACCCTGGC             TAATATTGATTCCCT  41 99
        nuoM NONE
        nuoN 1539780 .. 1539797 + -11.3  -5.48825   AGTAAAAACGAAAAA             CCCGCTT CACG AAGCGGG              TTTTTTTACCTGATG 100 47
CCO40_RS07275 NONE
        elaB 1542829 .. 1542845 +  -6.5  -4.56597   TTTTTTAGGGCAGTA              CCCCGTA TAA TGTGGGG              TTTTTAACAGGGAGG  76 88
        menF NONE
        menD 1545896 .. 1545911 +  -4.7  -3.00923   CGTTGCAGCAACTTT              TGGCT CAGGTA AGCCA               TCTATGATGTTGCAC  49 3
        menH 1546649 .. 1546659 +  -5.4  -3.41125   TGGCGTGGTAGACAG                 TCTG GCT CAGA                 TTCTGCGTCTCTGAC  56 1
        menB NONE
        menC NONE
        menE 1549921 .. 1549935 +  -2.1  -3.21924   GCCGTTTTGTTTATC               CGTTG ATGTG TAACG               TGTTATGAACAATCA  44 75
        pmrD 1550344 .. 1550394 +  -3.4  -2.98387   GGCTACCCAGACAAG CACATAGCT-GAGACTCAGCAGCGC ATAG GCTTTGCTGAG-CGCGAGC-GTGTG TAATGTTTTATGCCA  42 143
        pmrG 1558497 .. 1558518 +  -5.8  -2.86271   ATGTTAAAAGCGTAA           AGACAGCC TGAAGC GGCTGTCG            TCATTATAATAACCC  51 45
CCO40_RS07365 1559745 .. 1559762 +  -9.1  -4.30576   GCTGACGGCCCTTAT             GTTGGCG TAAA CGCCAGC              TTTTGATGCTAACGG  85 2
CCO40_RS07370 1561116 .. 1561148 +  -8.5  -2.63752   GGGAACGACATCGTG     AGCCGGATAA-GGC CGCTAT GCCATTATCCGGCA      ATATTATCTGCTTTT  63 62
CCO40_RS07375 NONE
        rhmD 1563367 .. 1563378 +  -4.4   -3.1978   ACGGCAACGCCCTCA                TCCT GTTG AGGA                 TATTGCTATGAGCAT  50 62
CCO40_RS07385 1564658 .. 1564668 +  -2.4  -2.86582   CCGGTGGCGCAATCC                 GGCG CTG CGCA                 TCATTAATCTTATCT  41 8
        yfaU NONE
CCO40_RS07395 1565694 .. 1565718 + -14.3  -2.77104   CGGCATAGAACTTTT          AGTGGGAAGGC CTG GCCTTCCCACC          CTTATATACTTATAA  87 33
        glpT NONE
        glpQ 1574029 .. 1574081 +    -9  -3.54543   AAGGTTTGCCATAGT CGAAGTGACGCGCCGGATGAGG GCATAAACG CCTCATCCGGCCTGGCGCAACG TTTGCCAGCGTAAGT  73 40
CCO40_RS07435 1576386 .. 1576411 + -16.3  -2.87931   GATTTCGATATCGCC         TTTTGCCCTGC AGCA GCAGGGCAAAA          TCTCTCCCGGCTGGA 100 51
CCO40_RS07465 NONE
CCO40_RS07470 1584974 .. 1584995 +  -2.3  -3.14132   GGCGGGTATACACGG           GAGGTATTGA TTT TCTA-ACCTC           TTCCTGGCCAGGCCC  44 212
        gyrA 1587850 .. 1587867 + -14.1  -5.29846   GTTATTGCTGTGCGA             GGGCCGG ATAT CCGGCCC              TTTTTCTTTGCCGTT 100 42
        rcsC 1591130 .. 1591166 +  -5.8  -5.30575   AACCGCCTGCGCTGA    TTTTCTCCAGCAGGCG AGAAA CGCTTTCTGGGGTGAA    TTTTTTGCCTTTTTG  95 358
CCO40_RS07495 1596123 .. 1596136 +  -9.5  -5.18357   AAAGATGTTGCTAAA               GGGCC TACG GGCCC                TTTTTTCATGCCTTA 100 47
        apbE NONE
         ada NONE
        alkB NONE
CCO40_RS07515 1601078 .. 1601090 +  -5.5  -3.28924   GGTATACACCACGAT                CGGCA GCT TGCTG                TTGTAGCGCAGCATC  52 321
        napF NONE
        napD NONE
        napA NONE
        napG NONE
        napH NONE
        napB NONE
        napC NONE
        ccmA 1608475 .. 1608494 +  -6.3  -2.86177   CCGCCGCCTGGTGCT            GACCGGC GGGGGG GCCGGGC             TGTGATGTGGCGTGT  55 1
        ccmB 1609148 .. 1609174 +  -2.9  -4.39386   CGCTGCGCATCAGCG        TG-CAGTAGCGC CCCG GCGCGACGGACA         TTTTACTGGTTTCAG  60 18
CCO40_RS07570 1609938 .. 1609950 +  -6.2  -2.50493   ACTGAAAAGGGGGCA                CCGG TGAGT CCGG                CATTTTCATCGTGGA  53 19
        ccmD NONE
        ccmE NONE
CCO40_RS07585 NONE
        dsbE NONE
CCO40_RS07595 1614158 .. 1614191 + -20.3  -3.75105   GAGAAATAATGCCCT     GAC-GGCCCGGTGGCG TGG CGCCACCGGGCCTGGC     TTGTTACTGCATTCC 100 32
        pagL 1616612 .. 1616629 +  -8.4  -4.08064   GTAGGCATAAAAAAA             CCAGCC CTGACA GGCTGG              TTTTCAAGGGGAATT  78 414
CCO40_RS07615 1617829 .. 1617841 + -10.5  -3.10344   AGATGACACATTATT                CGCCG ATG CGGCG                TATCTTAAATCAGAG  73 156
CCO40_RS07620 1618322 .. 1618334 +  -3.4  -2.73543   CAGGAAGAGATGATG                TCTG CCGGA CAGA                TACTATATGTAAATT  43 149
       sspH2 NONE
CCO40_RS07635 NONE
CCO40_RS07640 1622435 .. 1622461 + -15.3    -3.767   GATATGGACGTTTAA         TAATACGCCCC ATGCA GGGGCGTATTA         TTTACTGGATGAATG 100 26
CCO40_RS07650 1624541 .. 1624559 +    -6  -3.54741   CTTTGACAGTCGTTC             TGAACTGA TTT TCGGTTCG             TTTCGCGAAATCATC  60 146
CCO40_RS07665 NONE
CCO40_RS07670 1626916 .. 1626929 +  -3.1  -2.63381   GGATCTATACCTCTC               TGC-CC GGT GGCGCA               ATCTTTCAGGCTTTA  42 157
CCO40_RS07675 1627620 .. 1627674 + -11.1   -4.7629   ATTTGCATTATTGTT GTAGTTTTATAAAATAAAAAGAGGGG CAAG CCCCTCTGTTTATTTTG-AAATCTGC TTTTTCACTTCCTCA  95 40
CCO40_RS07690 1630694 .. 1630710 +  -9.4  -3.65581   AGTCGATGTTTTGTG              TCGGGG TTTTT CCCCGA              TTATTCCCCGTTGCT  77 62
        yejK NONE
CCO40_RS07715 1634863 .. 1634878 + -11.8  -5.10208   AAACGCATAAAAAAA              CCCCGC CGGG GCGGGG               TTTTTCTTCAACTTC 100 96
        rsuA NONE
CCO40_RS07735 NONE
CCO40_RS07740 1640283 .. 1640302 +  -3.4  -3.71924   GCGCCTGAAAGCGTA            GGCTGGTG GACG CGCAGGCC             TTCTTCGATAATTTG  51 438
CCO40_RS07790 1651769 .. 1651787 +  -4.6  -3.42257   TCGATATCATGAATT             TGATAGTT TAT ATCTATCA             TTGATGTATTTACCG  52 323
CCO40_RS07795 NONE
CCO40_RS07800 1652836 .. 1652852 +  -2.1  -3.19602   CGAACCGGCAATGAT              CCAGCCG ACG CGAATGG              TATTGGTATACAGCG  43 213
        fruB NONE
        fruK NONE
        fruA 1658056 .. 1658073 + -11.3   -5.4833   AAACACGCTAAAAAA             GGCAGAG CGCG CTCTGCC              TTTTTTATTGCCTGA 100 44
        yieE 1661093 .. 1661106 +  -3.7  -4.80882   AGAGGAGGGCTGCCC               AGGCG GCAT CGCCA                TTTTTAGTATCCGCT  71 47
        lysP 1662808 .. 1662825 + -11.3  -6.07374   ATCTGACTCTTCTAA             CCCTCTC ATTC GAGAGGG              TTTTTTGTTTTTTCT 100 103
        cirA 1665073 .. 1665107 + -16.4   -2.5294   CCGTTTCTGACAGAG     ACTGGCGACAGCCGCG TTT TGCCGCTGTCGCCAGA     ATGTTATAACCGATG 100 31
CCO40_RS07860 NONE
CCO40_RS07865 1669553 .. 1669566 +  -8.1  -2.60392   GAATGGCGTCCTGCG               GCTGG CTGG CCAGC                ATTAATTCGCAGCTA  56 247
        folE NONE
CCO40_RS07880 1672376 .. 1672388 +  -3.4  -3.90318   CGCTGTAACCGTTTC                CATC CCTGT GATG                TTTCTCACGTAGTCC  55 69
        galS 1673533 .. 1673550 +  -6.3  -4.21989   GTAACCGTTTTCAAT             CTGTGAG TAAA TTCACAG              TTTATTAACATTGTG  70 54
        mglB 1675085 .. 1675106 +  -3.7  -2.70932   ATAACGTATTTCTTT           TG-CCATCCG GCG CGGATAGTCA           TAATTAAAAAGGCCG  45 109
        mglA NONE
        mglC 1677714 .. 1677742 + -10.2  -3.14211   CTTGCTTATCAGATA       ACCCGGCGCAGCG AAAC TGC-GCGCCGGGC        TTCATACCGCGAGCT  74 58
CCO40_RS07945 1686221 .. 1686233 +  -3.3  -2.89881   CGTCGTAAACGAATA                AGGAG AAT CTCCA                TGTCTGAAATAAATC  44 25
        gtdA 1687253 .. 1687263 +  -2.4  -3.81146   GCCCTGGGGCTGTTC                 CGCG AAG CACG                 TTATTAATTAGGGAG  51 8
CCO40_RS07955 NONE
        maiA NONE
CCO40_RS07965 1689914 .. 1689934 + -11.9  -5.58454   TTTGCTCATCGCAGA            GAGGCGTTA TGA TAGCGCCTC            TTTTTTTGCTGTGGA 100 91
        dusC NONE
        mdtQ 1692785 .. 1692800 +  -3.2  -2.71011   GGCGGCGGTTATCAT              TCCTGA TTTT TCCGGA               TGATTCAGACAGGGT  43 20
CCO40_RS07985 1693626 .. 1693640 +  -4.9  -3.32963   AAAATAAACGCCGGG               TGCCG GATGG CGGCG               TTATGCCATCCGGAT  54 34
CCO40_RS07995 1695041 .. 1695061 +    -9  -2.79302   GACGATTCTTCTGTA           GCGGCAACG CTGG CGT-GCCGC            TATGATGCCACTGCT  66 85
        pbpG 1696256 .. 1696274 +  -3.7  -3.88787   TTTGCCGATAAAAAC             GCGTCAG CGTTT CCGGCGC             TTTATACAGATGTCC  56 187
        bglX 1700461 .. 1700479 +  -8.8  -2.88663   AGCCTGCCGTCAACA             GGGCGC GATAGCA GCGCCC             TGTCTGGCAATGACT  65 40
CCO40_RS08015 NONE
CCO40_RS08020 NONE
CCO40_RS08025 NONE
CCO40_RS08030 1704585 .. 1704595 +  -6.8  -4.37092   GTTGTTGCTGCTGCG                 CCAG CGT CTGG                 TTTTCTCCGCACCAT  74 238
CCO40_RS08045 NONE
        btsR NONE
CCO40_RS08055 1708881 .. 1708891 +  -3.2   -3.2268   CATGTTATTTTGCTT                 TTCC TGG GGAG                 TATCGTTTTTCTGAT  45 517
        apbC 1713185 .. 1713220 + -17.2   -3.1478   CCAAAGAGAATATGA    CATTCACTGCATTAAT ATAT ATTGATGCAGTGAATG     TATTAATAAAATAAT 100 56
CCO40_RS08080 1713732 .. 1713761 + -18.1  -5.82036   TTATTAATTCCGCAG       GCCCATATCATTG ATAT CAATGATATGGGC        TTTTTTATTTGTTGT 100 44
        yehD 1714532 .. 1714551 + -12.8  -5.24129   GACTAATTTATTCAA            CCGGCGGC GTTC GTCGCCGG             TTTTTTATAAGCAAG 100 35
        stcB 1715274 .. 1715305 +  -2.3  -4.70772   TAAACAGGAGTTCAT      CATGCTAAG-GATG ACGCC CATCGCTTCGCTTG      TTTTATTGACTCTGT  64 38
CCO40_RS08095 NONE
CCO40_RS08100 1719023 .. 1719043 +  -8.2  -5.64274   ACATGGGGCTGTATT            TCCCCCTC TGGAT GAGGGGGC            TTTTTTTATCGATGA 100 261
        thiM NONE
        thiD 1721342 .. 1721354 +  -4.8  -2.66964   TCCGGTACATCATTT                CCAC GCGTG GTGG                TAGTATACTGCCTAC  48 10
CCO40_RS08120 1722273 .. 1722285 +  -3.3  -2.62184   CCGCCAGCATGGCTG                TCGCC CGC GCCGA                TGGTATCCACCACGG  40 159
        fbaB 1727123 .. 1727137 +  -8.5  -3.99805   AATAAGATAGGAGAC               GCCGC CCAAC GCGGC               TTTAAGTTTTTCCGG  74 495
        steD NONE
CCO40_RS08155 1729092 .. 1729104 +  -7.7  -3.72742   TACCTCCAAGAACTG                GCAGT TAA ACTGC                TTGTGTTCATAATGA  71 77
CCO40_RS08215 1747842 .. 1747862 +  -3.2  -3.01791   AAATCATCGCCGCCA           GCGA-CGGG TATG CCCGGTAGC            TGTTCGGAAAGCGCT  43 176
        alkA 1750417 .. 1750430 +  -3.7  -4.08767   AGAATCACCTGGCAG               CCGCG TTGC CGCAG                TTTTCGCAGAGTCGC  60 312
         udk 1754100 .. 1754125 +  -2.6  -3.14132   GTGATAACCTGGTTA         GCCCTTGA TGTGCTTGAT TTAAGGGC          TTGATGCGCGAAAGG  45 65
         dcd 1754738 .. 1754755 +  -2.6  -2.53263   TAAAGACTGAGCCAT             TCGGCG CAATAC TGCCGG              TCCATTGAGGGTAGC  40 31
        asmA 1756935 .. 1756947 +  -6.2  -3.83026   CACCAAATCCTCCAG                CGGC ATATG GCCG                TTTGCTGTCCAGGAA  63 333
CCO40_RS08255 NONE
         wzb NONE
         wzc NONE
        wcaA NONE
        wcaB NONE
        wcaC NONE
        wcaD NONE
        wcaE NONE
        wcaF 1767861 .. 1767878 +  -4.1  -3.54424   GCGCGTTCAGAAAGT             TACTCCC TAAC GGGACTA              TTTGAGGAAATGAAA  52 16
         gmd NONE
CCO40_RS08305 NONE
CCO40_RS08310 NONE
        wcaI NONE
        cpsB 1773103 .. 1773127 +  -3.5  -3.30124   GCGGTTCGAGGATCG          TTACGGGCG GATCTGA CGCCTGCAA          TTATGCCCGGTAAGC  48 10
        cpsG NONE
        wcaJ 1776110 .. 1776122 +  -4.7  -2.57881   GTGCTCAATCTGGCT                GCGCC AAT GACGC                CTTGTGAACAGGTTC  46 88
        wzxC NONE
        wcaK NONE
        wcaL NONE
        wcaM 1781571 .. 1781581 +  -2.6  -3.14211   GGTAAGTACCGCTAT                 TTTT ACG AAAA                 TTCCTGGGAAAAAGT  45 36
        galF 1782674 .. 1782725 + -10.1  -4.75518   TGATAAACATAATAA CGGCAGTGAACATTCGAAGCGGC AAGTTG GCTGAAACGAGTGTTGACTGCCG TTTTAGTTTTGTATA  91 68
        rfbB NONE
        rfbD 1785003 .. 1785016 +  -8.1  -4.55287   TCTGATAAATTTAAA               TGCCC ATCA GGGCA                TTTTCTGTGAATGAG  82 36
        rfbA NONE
        rfbC NONE
CCO40_RS08380 NONE
        rfbF NONE
        rfbG NONE
        rfbH 1790651 .. 1790667 +  -6.7  -4.43576   GAAGAGTTCTTTGGT              TTGAATT TCT AATTCAA              TTTATTCTATCTGGT  74 14
CCO40_RS08400 1791582 .. 1791602 +  -3.3  -4.28548   AAGAACTACTGAAAC            GGTTATGAG ATT TTCATGATC            TTTTAATAAATAAAT  60 18
CCO40_RS08405 NONE
        rfbV 1793989 .. 1794008 +  -2.2  -3.97636   AAGTTATTATATTGA            GATTAAAT GTAG ATTTAACC             TTTCTGGATTCAGCT  53 45
CCO40_RS08415 NONE
        rfbN NONE
CCO40_RS08425 NONE
        rfbK NONE
CCO40_RS08435 1800772 .. 1800795 +  -9.6  -2.72511   ACTATTCACCTTTAA          CCTGCCATGA CCGT TTGTGGCAGG           GTTTCCACACCTGAC  69 139
        gndA 1802248 .. 1802266 + -11.7  -6.06529   TGCAAAAATGTTTAA             GCCCGGT TTAAT ACCGGGC             TTTTTTTTATCTCTA 100 45
         ugd 1803640 .. 1803659 +   -10  -3.10244   TGATTAATAAGGCAA            TCGGGGCT GATG AGTCCCGA             TGATTTATTGACCAA  73 34
        wzzB 1804812 .. 1804826 + -12.8  -5.48303   TTTCTCATTAAAAAA               CCGGGC ATT GCCCGG               TTTTTTTACGCTTAT 100 80
CCO40_RS08500 NONE
CCO40_RS08505 1814220 .. 1814247 +  -9.2  -5.63103   TGCAAAAAATGACAC        TAACCGACGTTT TAAT ACGCGTCGGTTA         TTTTTTTGCTTCAAA 100 127
        yoeI NONE
        plaP 1815790 .. 1815808 +   -16  -5.43414   TCGGCAATAGTAAAA             CCGGAGGC AGT GCCTCCGG             TTTTTTGTCTGTCAT 100 53
        phsA NONE
        phsB NONE
CCO40_RS08545 1824290 .. 1824325 +   -12  -2.99251   CCATAAAATAATGTC    AGCAAGAAAATGTGCC TTGT GTCACATTTTCTTGCA     ATTTATCCATGTTTG  81 47
        dacD 1825678 .. 1825693 +  -3.3  -2.79796   AAGGCTGTAATTATA              CTGTA CATTCA TACAG               TATGGTGAAGTGACG  43 139
        sbmC NONE
CCO40_RS08560 1827467 .. 1827480 +  -2.3  -3.53012   GGCAACGATTTTATC               CCCGA ACCT TCAGG                TTTCCCCAGACGGCG  47 131
CCO40_RS08565 1827949 .. 1827983 + -10.7  -3.53563   CTGAATAATGCGCTA     CGGCAGTGGGAGCGT ATATC AGGCTCTCACTGCAG     TTTGACCCCGCCTGT  81 33
        pduF 1846156 .. 1846175 + -12.2  -4.47259   CGAACTGATCAAAAC            GTCTCCCA GCAA TGGGAGAC             TTTTGATATTGTCAT 100 113
        pocR 1847582 .. 1847595 +  -8.1  -2.82516   GGGTGAAAATCCCCC               GCAGC CCCC GCTGC                TGTGATGCTGACGAC  60 411
CCO40_RS08685 1849155 .. 1849184 +  -5.6  -2.69799   GCACTGGCTGGCGGC       GGCGAGGCGCGT ATTATG ACGATCCTTGCC        TGGTGTATCGCCTGG  50 7
        cbiB NONE
CCO40_RS08695 NONE
        cbiD NONE
CCO40_RS08705 NONE
CCO40_RS08710 NONE
CCO40_RS08715 NONE
        cbiG NONE
CCO40_RS08725 NONE
CCO40_RS08730 NONE
CCO40_RS08735 NONE
CCO40_RS08740 NONE
        cbiM NONE
CCO40_RS08750 NONE
CCO40_RS08755 NONE
CCO40_RS08760 NONE
CCO40_RS08765 NONE
        cobU NONE
        cobS 1863194 .. 1863211 +  -4.8  -2.76696   AATTGATCTTTCTGC             TGGCTC TGTTAT GAGCCG              ATTATTACGGACGAG  49 12
        cobT NONE
        ldtA 1865293 .. 1865306 +  -2.3    -3.727   GGTCAACATTAGCGC               GGGCA GGTC TGGCC                TTTAAATATCCTGCC  51 7
CCO40_RS08795 1867330 .. 1867343 +  -2.3  -3.36273   ACAGGCTTTGACAAG               CCAGG GGCA CCTCG                TTAATATTCGCCCCG  45 126
CCO40_RS08800 1867508 .. 1867535 +   -12  -5.05782   AATAAATTATCTTTA        CCCGGTTGACCT GAGA AGGTTTACCGGG         TTTTTTGACATCCAT 100 89
CCO40_RS08810 NONE
CCO40_RS08820 1870370 .. 1870413 + -24.8  -3.29043   TGAAAAGCGGCACAA TAAGGCCTTAGCGGGAGGCG ATTC TGCATCCCGCTAAGGCCTTA TTGTGCCGCGAGCTT 100 98
CCO40_RS08880 1879495 .. 1879509 +  -5.8  -3.05463   AGAATATACTTAGAA               TATTCT GTT AGAATA               TTACGTGAAAAACGT  52 89
CCO40_RS08885 1879945 .. 1879959 +  -5.6  -3.07013   CGAAGATTTCAACAG               CCGCAG CGA CTCCGG               TATCTTGCGCGCATG  52 75
CCO40_RS08890 NONE
CCO40_RS08895 1881751 .. 1881766 +  -3.2  -4.25104   GGTTGCCAAATCATC              CCCGTT CTCT AACCGG               TTTTGGTCGCACAAG  60 64
CCO40_RS08900 NONE
CCO40_RS08905 1882588 .. 1882602 + -11.4  -5.60993   AAATAATTCATATTA               GCTCCG TAC CGGAGC               TTTTTTTATGCCCGG 100 35
        drpB NONE
CCO40_RS08920 NONE
CCO40_RS08925 NONE
CCO40_RS08930 NONE
CCO40_RS08940 1889749 .. 1889761 +  -4.9  -2.78384   CATCCTCGTCTAAGG                TGAAA ACG TTTCA                TCTGATACAGGAGGC  49 70
CCO40_RS08945 1889972 .. 1889991 + -12.8  -4.34402   AGCCCGATGACAAAA            CGCCCGGT TAAT GCCGGGCG             TTTTGCTGTGGAGAA 100 31
        dgcQ 1892193 .. 1892205 +  -4.7  -3.14211   TATCGCGCCAGATCA                GCGAC ACC GACGC                TTCATGCAGACGGGT  47 375
        dsrB 1893590 .. 1893601 +  -4.4  -4.28115   TGTCAGCCGCACTAC                GTGA TAGA TCAC                 TTGTTTATTATGCGT  66 118
        fliE 1905657 .. 1905687 +  -2.5  -4.61482   GGGGGGGGCCGCGAC       GCCCATGCAACCA GTGCG TGATTATGTGGGC       TTGTTTTTTGCGAGG  65 98
CCO40_RS09060 1908827 .. 1908839 +  -4.7  -4.07568   ATCGGGATAAAACAC                CGACG GCA CGCCG                TTTTCACGAAGCAGG  62 458
CCO40_RS09085 NONE
CCO40_RS09090 1913746 .. 1913761 + -10.4  -5.26875   GTGGTACACAATCAA              GGCAGC GAAA GCTGCC               TTTTTTAATTCCGGA 100 64
        fliB 1914999 .. 1915022 + -10.2  -4.04318   TGACATAGTTTTGTT          CGGGGTGGGC TTTT GCGCATCCCG           TTTATCCTATCTGGC  82 33
CCO40_RS09100 NONE
        fliZ NONE
        tcyJ 1917534 .. 1917551 +  -5.5  -5.67283   ATGTCAGCAAACGGA             GGCGCGTG AAT CG-GCGCC             TTTTTTATTTCCGTT 100 95
        dcyD NONE
        tcyL NONE
        yecC 1920233 .. 1920244 +    -3  -3.39327   GTTAATTTAAGTCAT                TCAT AATA ATGA                 TTATCAATATCAAAG  46 216
        sdiA 1921030 .. 1921056 + -12.2   -5.1861   GCGCCAGACGCGAAA         CCGGCTGAAAGC GAT GCTAACAGCCGG         TTTTTTACTACTGGC 100 58
        uvrY NONE
        uvrC NONE
        pgsA 1924833 .. 1924845 +  -4.1   -3.5394   ACGCGGAGATTTGCT                TGATC AGT GATCG                TTTCGCCGCAAATTT  52 16
CCO40_RS09160 NONE
CCO40_RS09165 NONE
CCO40_RS09170 1925338 .. 1925351 +  -8.1  -5.66684   AGCAGTGTCGTGAAA               CCACC TACG GGTGG                TTTTTTTGTGCCTTC 100 70
CCO40_RS09175 1925959 .. 1925970 +    -3  -2.97439   CATCATAAGGTAATG                TGAT CCGC ATCA                 TGCTTTAATCACGTT  42 109
CCO40_RS09180 1927690 .. 1927709 +  -3.5  -3.95324   GATGTGATTATGTGC            CTCACAC ATTGAA GTGAGAG             TTATTGTTGGCGGTA  55 187
CCO40_RS09185 1928088 .. 1928107 +  -6.4  -4.52589   CATGAGTATAATATA            GCGAGAAA CTCA TCTCTCGC             TTTTGTGTGGGGCGA  76 46
CCO40_RS09190 1928998 .. 1929034 + -18.1  -3.66874   CGGCCATAGCGTGAT    GATTATCGAGCCTGGAC GGC GTCCGGGCCCGGTAATC    TTTGCCTGACATTAA 100 52
CCO40_RS09200 1930935 .. 1930957 +  -2.8  -3.59867   GTCGGATAATCCTGG          CTGG-TCAT TGCGGC ATGAGCCAG           TTCATTAATTTTTTG  49 237
CCO40_RS09215 1933110 .. 1933129 +  -9.2  -3.23692   GCTTCATCTGCCAGA            CGCGACAG CGTG CTGGCGCG             TTGCTGATAATCCTC  65 400
CCO40_RS09225 1934914 .. 1934948 + -14.4  -3.91897   ACAGTATAGCTTCAC    G-TCATCGCCAGCCG CTACCC CGGCTGGCGATGGTC     TTTCTAAATGGCGAG 100 414
        otsB NONE
        otsA 1937604 .. 1937621 +    -4  -3.55761   TTTCGCCTGAACAGG             GCGGGC GATAGA GACCGC              TTTAGCCAGTAGCTG  51 388
        flhD NONE
        flhC 1939432 .. 1939455 + -15.4  -5.86332   TGGACAAACACTCCA          GCAGCGGTAA GTCA TTACCGCTGC           TTTTTTTTGCCTTGC 100 52
        motA NONE
        motB NONE
        cheA 1943345 .. 1943360 +  -3.2  -2.75064   CCGCGAACAACGTAT              GGCG ATCACAGC CGCC               TGATTGAGTGAGAAG  43 7
        cheW 1943893 .. 1943921 + -23.3  -3.07233   CGTCGCGTAATAACG        TTGCCGGATGGCG TCG CGCCATCCGGCAA        TATTCACCGTTATGC 100 31
         tar 1945892 .. 1945914 +  -6.9  -2.76483   GTAATACGGGAAGCA          TGGCGCTGCC GCAG GGC-GCGCCC           GTTGTACTTTGAATG  55 132
        cheR NONE
        cheB NONE
        cheY NONE
        cheZ 1948973 .. 1949004 + -13.1  -3.10493   GAATCCGTCAACCCG      GCCGGATACGAGA CTTTCT TATCGTATCCGGC       TATCTCTATTAACGC  86 78
        flhB NONE
        flhA NONE
        flhe 1952743 .. 1952761 +  -4.5  -3.56042   ACCGCCCCTTTCTTT             GCCAGGT AGCAG ACCTGAC             TCTCTTTTTGAATAA  54 40
CCO40_RS09325 1954235 .. 1954260 + -10.3  -4.09685   TTCGCATGATGGGCG         CGGCGGTAACG CCGT CGCTTCCGCCG          TTTTCCAGAATCAAG  86 156
CCO40_RS09340 NONE
        cutC 1959571 .. 1959595 +   -10  -5.71983   TGCTTGCTCGTACCA          GGCCCCTG CCAATTCAA CAGGGGCC          TTTTTTTCTCCTTCA 100 73
        aspS NONE
        nudB 1965982 .. 1966002 +  -3.2  -5.40474   AAGAGTTTGTCATTA           ACGTCGCCT GAAA AGGCG-CGC            TTTTTTTGAGGAAAT  81 15
CCO40_RS09385 NONE
        ruvC 1967328 .. 1967350 +  -7.7  -3.75153   TGCGCTAAATCATTC           TCCCTCAGC CTCGC GTTGAGGGG           TTTCAATTCCACAGG  71 33
CCO40_RS09400 1969114 .. 1969129 +  -7.6  -4.47611   ATACGTGTTTTTCAT              CTGGAT AAAC ATCCAG               TCTTTTTTTATGATA  80 316
        ruvA NONE
        ruvB 1970829 .. 1970847 +  -3.8  -3.21934   CGCCTGAAGTCGCTG             CGCTCA TCAGACC TGGGCG             ATTTTGTAGGCCCGG  48 41
        znuA NONE
        mepM 1974804 .. 1974826 + -13.4   -5.8901   AAATGCGCTGACAGA           GCCGGTACGC GAT GTGTGCCGGC           TTTTTTGTTTTGTGT 100 42
        lpxM 1975881 .. 1975898 + -11.3  -3.96148   CATCAAATAAATAAA             GCCTCTC GTAA GAGAGGC              TTTATGCTGACAAAC  91 31
         zwf 1980280 .. 1980305 +  -5.4  -5.80364   TTTTTGCACTTTTAA         GCCTCGTGTGG ATTCA CC-TGCGAGGC         TTTTTTTATTACACT 100 105
         edd NONE
        kdgA 1982997 .. 1983029 + -11.4  -3.08046   GTCTGATAAAAATGC     GCTAACGTCGCCATC AGGC GATGGCG-CATTAGC      CTTTTACCGTCACGC  79 97
        yebG 1984636 .. 1984646 +  -4.6  -4.41206   CTGAACCCATACTTG                 CGCT CCC GGCG                 TTTTGTACCATGCTT  66 37
CCO40_RS09475 1985048 .. 1985060 +  -5.5  -4.17048   TAAGCCCCGCTAGCA                GCGTA ATT TGCGC                TTCTTTTGCCGGAAC  67 28
CCO40_RS09480 1985824 .. 1985838 +  -5.6  -3.39908   TTAAGTAACATGTTT               CGCTTG CAT CATGCG               TGTCTTTTGCCACCC  56 51
        ptrB 1988072 .. 1988098 +  -8.7  -3.89291   GCATAGACGCGCGCG        CCCGCAACGGCT TGTG AGC-GTCGCGGG         TTATTGTGGTGTTCC  76 35
        yobA NONE
        copD NONE
CCO40_RS09515 1991592 .. 1991619 +  -8.5  -5.76633   ATTTTTAATAAAAAA        CCGTAAACCTT CACGAA AAGGCTTACGG         TTTTTTTATCTCTGA 100 44
CCO40_RS09535 1994706 .. 1994717 +  -4.4  -3.85817   ATCAAGGCACTCATC                TTCC ATCA GGAA                 TTTCTGCGACCACAT  58 369
CCO40_RS09615 2005100 .. 2005112 +  -6.3  -2.79915   ATTTGAATACCCATA                GCTTT ATG AAAGC                TGTAATCAGGTAGCT  53 50
       sopE2 2008142 .. 2008173 +  -6.6  -4.75288   CTATATATTCGTTTT      TATGGCGACGCTTT TAAC AAAACGTCGTCATC       TTTATTTTAATATAA  80 98
CCO40_RS09635 2008554 .. 2008603 + -19.4  -4.66318   GAACAGGCGATAGTG AGTAGCTCGCTGCGCCAGGGGA TAACCC TCCCCTGGCGCAGCCAGTTATA TTTTATTGCGATGAT 100 61
        pphA 2009686 .. 2009701 +    -6  -4.44608   AGGAAGAATAAATAA              CCCGCC TGGC GACGGG               TTCTTTTTGAGTCAG  76 319
CCO40_RS09670 2016123 .. 2016142 + -12.2  -3.15996   GTAGCAATTACTGAT            GGCGTCAT TATA ATGACGCC             TGTTCATGCCTGCTG  83 53
        proQ NONE
         prc 2018955 .. 2018976 + -13.1  -6.06723   ATAAGTAACGCTAAA           CAGGCACAA AAAA TTGTGCCTG            TTTTTTTTTAACAAG 100 33
        htpX 2020047 .. 2020064 + -12.7  -5.42259   TGGCAAGTATGAAAA             GCGCGTC GAAT GACGCGC              TTTTTTTACGCCTGA 100 50
        kdgR 2022441 .. 2022463 +  -9.9    -5.626   TGACGTTAAAAAAAA           GCAGCTACG AAAAA TGTAGCTGC           TTTTTTTATAACATC 100 56
        mgrB NONE
CCO40_RS09710 2023799 .. 2023815 +  -2.9  -5.26907   AGAACATCACAAAAA              GCGGTGT CGA AAATCGC              TTTTCTTTTCTATTA  76 304
CCO40_RS09715 NONE
        cspE 2024583 .. 2024601 + -12.4  -4.89009   AGCCTCAGATATAAA             GCCTCGCT AAA AGCGGGGC             TTTTTAATTCAATAT 100 74
        ftsI 2026512 .. 2026539 +    -7  -3.53224   TAAAGGATTTTCCCG        GGGCGCAATT CGCGTTAC ACTTGCGCCC         TTTAGCGCCCCAGTC  62 38
        rlmA 2027384 .. 2027407 + -10.4   -2.5655   CGTTAACCGTGAAAA          T-GCGTCCAGA GGA TCTGGACGCCA          ATTCCTATCAGTACG  70 35
        yoaE 2033630 .. 2033682 + -12.5  -3.09635   ATCGCGGACATAATC TGTCCGTTATGCCGGGCGGGCGGCG GCG CGCTGCCCGCCAGCCACTGTGGAAA TTCGCTAATGGGCAT  81 75
CCO40_RS09785 2039359 .. 2039369 +  -2.4  -4.56597   AGAATACGTGACTTA                 CTGG AGC CCTG                 TTTTTCCAGCACCGC  65 209
CCO40_RS09795 NONE
        tsaB NONE
CCO40_RS09805 2042994 .. 2043018 + -14.4  -2.56596   GTTTTATCAATAAAA          GAAACAGCGG CTGGT CCGCTGTTTC          TGCATTCATAGAGAC  87 47
        fadD 2044886 .. 2044902 + -11.5  -5.75342   TCAGCTAACGAGAGA              CGCCGGT TAA GCCGGCG              TTTTTTTTGGCGCGA 100 49
         rnd 2046135 .. 2046150 +    -9  -5.14563   TAAAAAAATAAAAAA              GGCAGA TTCT TCTGCC               TTTTTTAATCCAGGA  93 98
CCO40_RS09835 2048426 .. 2048436 +  -8.2  -2.55544   CGTTAAACGGTATTC                 GGCG CCG CGCC                 TGAATTCCATCATGA  59 35
CCO40_RS09840 NONE
CCO40_RS09845 2049669 .. 2049684 +  -2.5  -3.98291   GGGCAGAATAAGTCT              TCGGC AAAACG GCTGA               TTGTTTACAATTCTT  54 30
CCO40_RS09850 2050186 .. 2050202 + -10.1  -5.17054   CAACCGCCTGATGCA              CCGTCTG TGC CAGGCGG              TTTTTTACATCTTCT  93 58
CCO40_RS09855 2050961 .. 2050979 +  -7.5   -4.2828   ATGTGGTGATTAAAA             GGTGTAT TTAAT ATACACC             TTTTAATCACTGGCA  74 468
        fadR 2054479 .. 2054490 +  -4.4  -4.27617   GTTGCTCAGGTTATA                CTGT GACG ACAG                 TTTTGATCGAATCTC  66 309
CCO40_RS09885 NONE
        dadX 2058497 .. 2058527 + -14.7  -3.29043   TAATTCAGGCTAAGG       CGTCGACCGGTCC ACTGG GGGCGGGTCGACG       TTGTCCGGCGACCTT 100 43
        emtA 2062148 .. 2062205 + -10.7  -3.14257   ATAATCCGCTGCAAC TC-CCGCTCCACCGCC-GGGCTAACGTT AAGGA AACGAAAGCTCAGGCGG-GGAGTGGTGA TCGTTTCATTTTTCC  69 106
CCO40_RS09915 2063258 .. 2063285 +   -12  -2.62184   TGCAGAACGTGTAAG        CGTTGACCCGGT CAGC GCCGGGTCAACC         TACTATAAACACGCG  79 45
CCO40_RS09975 2077222 .. 2077237 +  -3.2  -4.43911   TTGACGCTTAGAGCC              TATCCC ATTA GGGCTA               TTTTACTTGCCATTT  62 232
        ychH 2081718 .. 2081744 + -10.1  -2.65388   AGCTAACCGGTTCAG        GCCCGGTAAGCG TTAT CGCC-ACCGGGC         ATTGTCCATTAACTG  70 35
        hemA 2087836 .. 2087848 +  -2.7  -3.59262   CACACACCACACTTT                TTTAC AGG GTGAA                TTTACGCCTATGAAG  50 44
        prfA NONE
        prmC NONE
       sirB2 NONE
       sirB1 NONE
        kdsA 2091886 .. 2091907 + -10.2  -5.36441   TTTTAGCTTGTGTAG           GCCGGATA AGATAC TATCCGGC            TTTTTTATATCAGGC 100 47
        chaB 2093956 .. 2093970 +  -2.8  -4.37886   TTTGCATGAATAACC               CTTCTC CTC GAGAAA               TTTTGTCGGCAATGG  60 467
CCO40_RS10070 2095720 .. 2095734 +  -5.7  -3.19192   CTTCAGAATATCGCG               CTCAC GCGGG GTGAG               TTGCGTTACATCGCG  54 197
        narK 2099743 .. 2099761 +  -8.8  -5.75342   TTTTGATTATCCTTT             GCGCGG CGTTAGA CCGCGC             TTTTTTTTACCCGCA 100 42
CCO40_RS10090 NONE
        narH NONE
        narJ NONE
        narI 2106794 .. 2106809 + -10.4  -5.65177   TCTCGATGCCCTAAA              CTCCGC TTCG GCGGAG               TTTTTTTATGGCTGT 100 46
CCO40_RS10110 2108695 .. 2108713 +  -8.8  -4.02534   GCTTCGCCCTTCGGG             TCGTTGCC TGC GGCAACGC             TTTCTCGCTTTCGCT  76 176
        rssA 2112301 .. 2112318 +  -2.6  -3.23853   TTCTGACAGGCGCAA             GCGGCA ATACCA TGCCAC              TATTGATTAAAGCCA  45 68
        rssB 2113420 .. 2113430 +  -5.4   -4.0056   CGACGAGTGTTACTA                 TCTG CGG CAGA                 TTTATAAGTATTTGT  63 83
        galU 2114501 .. 2114519 +  -9.5  -5.64274   AATTTTTTAACAGAA             GCGCTGG TAAAT CCGGCGC             TTTTTTTATGCCTGG 100 53
         tdk 2116451 .. 2116468 + -12.7  -4.93296   GGTAAAACAAAAAAA             CGGCCTC AATT GAGGCCG              TTTTTGTCATGCTAA 100 176
CCO40_RS10190 2120321 .. 2120343 + -16.2  -3.36492   ACCTGTTGATTTACA           GGCGGCGCCC TAA GGGGGCCGCC           TTGTGACATTCCCAG 100 47
        oppA 2122716 .. 2122741 + -16.3  -2.80583   ACATTAATGGCAAGA         CATGGGACAAC TGCG GTTGTCCCATG          GTGTCTTTTTTCATC 100 34
        oppB NONE
        oppC NONE
CCO40_RS10210 NONE
        oppF 2126700 .. 2126720 + -12.6  -4.21812   CCGTTATAATCGCAA            GGGCTGAC AATTC GTCAGCCC            TTCTTTTAGGTGAGG 100 32
CCO40_RS10220 2127612 .. 2127623 +  -7.2  -2.76696   CAATCAGACGCCATC                CGGC CTGA GCCG                 CTTATTCGCGCCAGA  58 60
CCO40_RS10235 2129969 .. 2129989 +    -9  -3.21595   GATCGTTACTGTCCA           CTGC-GGGC ATCG GCCCGGCAG            TTAATAATCGCCCTT  65 230
        tonB 2131336 .. 2131364 + -10.3  -2.54504   ATGTCATTCCTTCCA        CGCGTACGGTT ACAACCC GACCGTGCGCG        ATCTCTTTGGCCAGT  65 311
        ompW 2134714 .. 2134726 +  -9.1  -2.56271   GCTACCTCGCGGATC                GTCGC CTT GCGAC                ATGTTGTAGTACACG  59 323
         rnm NONE
CCO40_RS10330 2145563 .. 2145578 + -11.8  -2.69188   ACGCGGCCTTAAAAT              GGCGCG GCAA CGCGCC               GTTCATTCTCCTGTT  79 60
        rluB 2146545 .. 2146574 + -10.8  -3.14931   GATCATCAGACAAGA       GG-GTTTGTGCCG GATGG CGGCGCAAACGCC       TTAATCCGGCCTACG  78 66
        sohB 2149232 .. 2149260 + -16.1  -2.56596   GATGTAAACCGCTAT        TGCCGGATGGC ATTCAGC GCCATCCGGCA        TGGATTAATCCACCA 100 34
        topA 2152545 .. 2152562 + -14.1  -5.37043   CCACTGTAGTCAAGC             GGGCCGC GTAA GCGGCCC              TTTTTTATATCCCCT 100 54
        cysB 2154045 .. 2154056 +    -3  -4.20516   AATAGTTATCTTGAG                TCAA AAGA TTGA                 TTTATTCACTGGCAA  58 169
CCO40_RS10370 NONE
CCO40_RS10375 2154557 .. 2154567 +  -4.6  -3.43618   CACCGCAGCAACCGT                 GTGC TGA GCGC                 TTCTCAGTATTGATT  54 89
CCO40_RS22475 2154706 .. 2154731 +  -9.1  -4.90136   TCTAATCTCGTCAAA         GCCCGATAA TGCGTTAT TTATCGGGC          TTTTTCATCTTCGTT  93 36
        acnA 2157562 .. 2157592 +  -9.6  -2.84051   GAACTAAAGCCGTTT       ATCGGGCCTGCC GTAAACA GGCAGGCCCGCG       CTTTAATACCGGTGG  70 34
        pgpB 2159211 .. 2159242 +  -5.2  -3.54543   CTGATGGTGGGCGCA      TTTCCA-TTTCGCGC GAG GCGGGAAAATGGTAA      TTTAGAAGGCTGGAT  56 77
CCO40_RS10395 NONE
        lapB 2160875 .. 2160902 +  -2.8  -3.64703   ATCGGCGGCCAGGGC        TTATCAGGTT GTCAATCG AACCTGTTAA         TTTCCCTGCGCCGCA  50 107
        pyrF NONE
        yciH 2162502 .. 2162512 +  -5.4  -3.50555   GGGTATATCACGCAG                 GTGA TAG TCAC                 TTCCTGTTATTTCGC  57 480
        steC 2172528 .. 2172551 +  -2.4  -5.20534   ATATATTGTTTTTTT          CGATCATTTT TTAT ATATTGATCG           TTTTTATTGATTGAT  74 403
CCO40_RS10460 2173652 .. 2173678 +  -7.8  -3.85698   TTTAGGGCGTAAAAT         CAGCGCGCGGGC CAG GCCCAGACGCTG         TTTCTGCCCCGGCGC  68 353
        pspA 2180573 .. 2180598 +  -3.1  -3.70902   AATGACAATGGCGGC         GCCGATACGCG CCGT CGCTCATCAGC          TTTAGGTGTAAGGAG  51 39
        pspB NONE
        pspC NONE
        pspD NONE
        pspE 2181865 .. 2181881 + -10.8  -3.80018   TACTCATACTAACCG              CGGCGC TTAAT GCGCCG              TTGTTGATCTCTCCG  85 57
CCO40_RS10520 NONE
CCO40_RS10525 2184447 .. 2184481 +  -4.9  -3.34716   AAATGACCTTCCACA    GGGCGCTGATTGCCTG GCTT TACGCCG-CAGCGCCC     GTTTTTCCGCCATGC  54 35
        tyrR 2186134 .. 2186157 + -12.5  -3.28712   AAGAGTAGAAAAAAA          GAAGGCCTC CGGATA GAGGCCTTC           TTGTGACAAAAGAGC  90 33
        ycjG 2188050 .. 2188094 +  -2.8  -3.69354   CGTGAAAAGAGACGA CCCAGGCGGGTTG-GAGTCGA TGAA TTAACTGGCAAAGCGCCTGGG TTTCCGGTTCTGAGC  51 272
CCO40_RS10550 2190384 .. 2190402 +  -2.3  -3.55889   GGCATGGGGATTAAG            CGAGCGCC TGAT GCCGC-CG             TTCTCATTGCTGTGT  47 100
CCO40_RS10560 2192407 .. 2192430 +  -4.6  -3.34716   CAGAAAACTTTTTCA          CAG-ACGGTCA AAA TGACGGTACTG          GTTTTTGACGCATAA  52 73
CCO40_RS10565 2193548 .. 2193578 + -14.1  -2.75074   ATGAACAGCTTCTAA       CACGGTTGCCG GAGCGTAGA CGGCAACCGTG       TGATATTCGCCTGGC  87 68
CCO40_RS10575 2195049 .. 2195061 +  -5.5  -3.06915   CCTAATCATCCATCT                TGCCG TTG CGGTA                TTCGGTAAAGTACAT  52 97
CCO40_RS10580 2195371 .. 2195389 +  -5.2  -3.87994   TTGAGAGGCCGTGTC             CAGTATGG GTA CCGGACTG             TTTCTGGGCCTGAAT  61 54
        zirU 2199045 .. 2199057 +  -5.5  -3.29511   GAATAAACGCGCTAT                CCGTC GCT GATGG                TTATCGCCAAATAAA  56 16
        zirT NONE
        zirS 2201966 .. 2201990 +  -2.3  -3.31001   GGAAGACTATAAAAC          TATATTAATTA TTA TGACTAATATA          ATTCTTTTTATCACC  45 29
CCO40_RS10610 2202691 .. 2202702 +  -4.4  -3.91597   GCAGGCATTCTCTTG                TGTG CCCC CACA                 TTTAATATATATACT  59 98
CCO40_RS10625 2204464 .. 2204505 + -13.1  -5.18371   CGTCATTCGGACAGG GAAGCCTCGGTGCCCGATAA GCG TTATCGGGCACCG-GCTATC TTTTATTTTATCGCA 100 67
CCO40_RS10635 2206164 .. 2206174 +  -6.8  -3.04248   GGTCGCAGCGCAGAT                 GGTC AAT GACC                 TGTTCGGCCGTGTTC  54 157
        smrA 2209507 .. 2209520 +  -2.3  -4.44245   ACCGCCAGCGCAAGC               TCGCG CGAA CCCGA                TTTTATGCCTGATAT  59 63
CCO40_RS10660 2211052 .. 2211070 +  -7.4  -5.03145   ATACATGTTTGGTAA             GCGCCT GTTGCTA AGGCGC             TTTTTTCGCACGTTC  86 43
        zntB 2212353 .. 2212372 +  -7.1  -5.83822   ATTGATTCGTACGAC            GCCGGCT TAGATT AGTCGGC             TTTTTTTTGCCTGTA 100 215
        dbpA 2214028 .. 2214065 + -13.5  -3.00106   TATTAAAATGATCGA   TAGCATGGCGTCTCAGCG GAG TGCTGAGACGCC-TGCAG   ATTATTTCACTTCGA  87 30
CCO40_RS10685 2215711 .. 2215740 +  -9.3  -2.62613   GCGATGATGATTGAT       TTGAGCCCGCA CTCTCTTA TGCGGGCTCGG        GTATTTAGCGTACCA  66 41
CCO40_RS10705 2221038 .. 2221051 +  -3.7  -4.24002   GCCAAAGCTGAGCTC               CGGGC CGGT GACCG                TTTTACCGTTTACGC  64 336
CCO40_RS10720 NONE
CCO40_RS10725 NONE
CCO40_RS10730 2225737 .. 2225749 +  -4.1  -3.75153   TTGGTAATTTTTGAA                TACGG AGG TCGTA                TTTACATTAGGCGAA  55 83
CCO40_RS10735 2226447 .. 2226474 +  -5.6  -3.60792   TGTCTTTATGGATAC       CGCCGCGGCTGG AGAGAA CCA-CCGCG-CG        TTTACCGGTTACCAG  55 201
        hrpA NONE
CCO40_RS10750 2231885 .. 2231901 +  -2.3  -4.06687   AAGTGCGACCACCAT              TTCATAA ATT TGATGAA              TTATTTATAAAAGCT  55 70
        cybB 2232768 .. 2232805 +  -6.9  -3.14931   TGTACTTACGATGAG   CGTGGCGTAGTGGCG GAAAATAG CGCAACGGCGCCATG    TTGCTCCAAAGTCAC  59 306
CCO40_RS10790 2240089 .. 2240104 +  -5.4  -3.84514   TTAGTTTTTAACAGG              GCATTG TGAG CGATGC               TTTCATCCTTAAGCT  61 444
CCO40_RS10800 2242481 .. 2242495 +  -5.6  -3.07622   TAGTAACCTATAACA               GGCCTC CCT GAGGCA               TTGGCTAGCATCTGT  50 347
CCO40_RS10810 NONE
CCO40_RS10815 2244643 .. 2244667 + -15.7   -4.5538   CGATAACTGATTCAT          CCGCCAGCGGA TTT TCCGCTGGCGC          TTTTCTGAATTTTCT 100 31
CCO40_RS10820 2246439 .. 2246470 +   -13  -2.55351   TCCTTTAGTAAGCGT      CGCGTCAGCGGGCTA TTT TAGCC-GCGGGCGCG      GTTAATGTCCGACAG  84 33
CCO40_RS10830 2249061 .. 2249079 +  -3.8  -2.62184   CTTTAAAAGCGGTAA             GCTTCACA GGC TGTGAGGA             TACTGTAAAAGGAAG  44 35
CCO40_RS10835 2250648 .. 2250660 +  -5.5  -3.79906   GCGTGAGGTTTACAT                CCGAT TCG GTCGG                TTCTTATCGACATAA  61 65
CCO40_RS10840 2252469 .. 2252479 +  -3.2  -3.25356   CGTTATGTCGACGAT                 CGTA TCA TGCG                 TTAGTCAGTTTGCCT  46 11
CCO40_RS10845 NONE
CCO40_RS10850 2254475 .. 2254495 + -15.5   -4.4084   CCCCAGTAATATAAA            GGTCGGGTA CTA TACCCGACC            TTTTCCTGTATGATT 100 32
        rimL 2261640 .. 2261651 +  -4.4  -4.25681   GCAGTCACAGATCCA                GACA TTAT TGTC                 TTTGTTGCCTTCGAT  66 397
        tehA NONE
        tehB 2263972 .. 2263983 +  -3.6  -4.15201   AGTTCTGTAAGTCTC                GCTG CGTT CGGC                 ATTTTTTTTGTCGGG  57 49
CCO40_RS10915 2265121 .. 2265176 +  -3.9  -3.55444   AAGTAAATAAAAAAC GCCTGCGGCGGCG-GCCGCTAACCAGCG ACG CGTTGGATCGGGGTGCGC-GTC-CGGGC TTTGACAAATGGCGG  51 373
CCO40_RS10925 2266638 .. 2266649 +    -3  -2.72211   CACGTGATTAAGCGG                GAAA ACTA TTTC                 GTTAGTTTGCGCTTC  41 30
CCO40_RS10930 2269159 .. 2269174 +  -6.2  -2.80443   CCAGGGGATTGTAAG              CCATAA TAAT TTATGG               TGTGGTCAACTCTGG  53 508
CCO40_RS10945 2271510 .. 2271520 +  -8.2  -2.86391   TAACCATCTGTTTAA                 GCGG TGT CCGC                 TAATCTTTACCTGCT  61 480
CCO40_RS10955 2272405 .. 2272422 +  -3.5  -4.10161   AAAGCACCATAACAG             TTAGCAA ATCA TTGTTAA              TTTTAACAACTGATA  57 82
        ycdR 2273948 .. 2273978 +  -6.1  -3.53855   CCTGACTAAATTTCC      CGAGTGTGCCGGGT GAGC ATCTGGCGCGC-CG       TCTATTTTTAGGAAA  60 65
        patD 2275851 .. 2275862 +  -3.6  -2.63479   TTTTTTCCTCTGGTT                GGCG CGGA TGCC                 TGATATGACCCTCTT  42 408
CCO40_RS10975 2276043 .. 2276071 +  -5.2  -4.57073   TTCGCTTTTCTGACC        TCAAGCCCGATA CAGGT TACCGGGCATGG        TTTTTCCGCCAGGTC  71 28
CCO40_RS10995 2283450 .. 2283463 +  -4.5  -3.14051   TGGTTCATCAGCAGG               CGTCCG GCG CGG-CG               TGTTCATCAAGCTGG  50 487
CCO40_RS11010 2285478 .. 2285498 +  -7.6     -2.55   CTTTTTTACAATTAA            GTTCCGAA ACTTC TTCGGGAC            TCGATTGCGATGTTG  57 297
        mcbR 2286233 .. 2286247 + -12.8  -3.04515   TATGACTAATCAATA               GCGGGG ATT CCCCGC               TATTGCCGGATATTT  83 53
CCO40_RS11025 2289714 .. 2289735 + -10.1  -2.80821   CTCTGTAAATAGGGT           ATGGAGGGG GAAA CCCCTCCAG            TCATCTCTTTAAACG  71 33
CCO40_RS11030 2290080 .. 2290090 +  -2.4  -3.01712   CTGACTAAGCATTGG                 GCGC GAT GCGG                 TGTTGGCGGCAACGC  42 33
CCO40_RS11040 2292856 .. 2292874 + -12.4  -3.02043   TTAAAAATTTTAACA             CGCCGCTA TTT TGGCGGCG             TGTTACAAAGAGATT  83 94
        nhoA 2294139 .. 2294165 +  -2.9  -3.66178   AGGCCATGATGGACG        AGCC-ATGCCCC CATC GGGCCATTGGCG         TTTCCCGTTACCGGA  51 248
        smvA 2305940 .. 2305954 +  -4.2  -2.82742   CAACGACCAGTGAAC               GTCTGC ACG GCATAC               TCCTTATGACCGAGT  45 483
        fdnG NONE
        fdxH NONE
        fdnI 2313418 .. 2313443 + -14.1  -4.38171   TCGCAATCTGATAAA         CAAGGCGCTAT CCTG GTAGCGCCTTG          TTTTCATCTGCTGTC 100 46
CCO40_RS11140 2318166 .. 2318186 + -13.3  -3.27951   CTATCACCTCAACGC            GCCGTAGAC CAC GTCTGCGGC            TATTGTCGTGGCCTA  95 139
        hdeB 2318751 .. 2318768 +  -6.2  -4.53036   AAACTGATATCAAAA             CCCGGC CTGTGT GTCGGG              TTTTACTATTTGTGA  76 45
CCO40_RS11150 2319730 .. 2319740 +    -4  -2.97158   CGTAAAGATTAGCCC                 CATA GTC TATG                 CTTGTTCTTCGGATG  46 96
        treZ NONE
        treY NONE
        glgX 2326255 .. 2326271 + -10.8  -5.52384   GCGCTCCGGACCCAA              CCGGCC TTGAT GGCCGG              TTTTTTTACTGGCGC 100 51
CCO40_RS11185 2332041 .. 2332051 +  -2.4  -3.74077   GTAGGGGAGGAATAC                 AGCC TAT GGCG                 TTTCAATGTCTGAAA  51 182
CCO40_RS11220 2337868 .. 2337882 +  -4.2   -3.3334   GAACGCGTCATTGAG               GTCAAC ATT GATGAC               TTATAAGCTGGCATT  50 5
CCO40_RS11225 2338274 .. 2338288 +  -2.8  -4.63218   CTATGGCCTACGTTG               TGTATG TGA CATTCA               TTTTATTCCCGCCCG  65 137
CCO40_RS11230 2338736 .. 2338767 + -10.4  -4.72497   GATGCTTATTCTCGG      TAAAACCGGTAGCAT TAT GTG-TACCGGTTTTA      TTTTATTCATCCCTA  91 39
CCO40_RS11245 NONE
CCO40_RS11250 NONE
CCO40_RS11255 2344941 .. 2344952 +    -3  -3.17956   AAACGATAGCTCCGA                TTGA ATTT TCAA                 TTAATCAACTGATTT  45 22
CCO40_RS11260 NONE
CCO40_RS11265 2347422 .. 2347449 + -17.1  -3.71848   ATTTACGGCAAGCTC        CACCGCATGGC ATGACC GCCATGCGGTG         TTATTCATCGACAAA 100 40
CCO40_RS11280 NONE
CCO40_RS11285 NONE
        cybH NONE
        hybD NONE
        hypC NONE
CCO40_RS11305 NONE
CCO40_RS11310 NONE
CCO40_RS11315 NONE
        hypA 2357235 .. 2357248 +  -6.7  -4.11751   TCTGTATTAGGATTC               GATGG GTTG CCATC                TTTTAGCAGATTGAT  70 207
CCO40_RS11330 2359580 .. 2359602 + -10.6  -3.01924   TGCTCTTCAGGTTAT           GGCGCAGA TGAACAT TCTGCGCC           TGTTAAGACAAACTC  76 45
CCO40_RS11355 NONE
CCO40_RS11360 2366222 .. 2366236 +  -4.2  -3.40403   TTGCTTTTCGCTTCC               GGCG ACTCATG CGCC               TTCTGCTGCGGGAAA  51 433
        marR NONE
        marA NONE
        marB 2367873 .. 2367891 + -12.4  -5.52986   CACCTTTAACCTCTT             TGCCCCGT TTT GCGGGGCA             TTTTTTTAGTACCGT 100 32
        ydeE 2370321 .. 2370340 +  -8.6  -2.53581   TCTGCAGCCAGTGAT            GTGCG-CAG TTT CTGGCGCAC            TGGGTTAACCCTATA  63 44
        mgtS 2370671 .. 2370705 + -16.5  -4.55287   TAATCCCTCGCAGAG    CCGGCCCCTTGCTGCA TCGT TGC-GCAAGGGGCCGC     TTTTGTCTGGATGGC 100 51
CCO40_RS11405 2372480 .. 2372498 +  -5.2  -5.03145   ATTTCCGTCCGCCAC             TGTGGCTA TTC TGGCCACC             TTTTTTACCCGCTTC  82 165
        ydfG NONE
CCO40_RS11425 2376741 .. 2376751 +  -4.6  -3.41126   CCCCTTTAACGTCGG                 GGTG AGA CGCC                 TTCTCCGCTTTCTCA  52 42
        ydfZ 2377141 .. 2377163 + -17.8  -3.10245   AACCGCTCCGGCCTT           CCCGGTAGCA TAA TGCTACCGGG           TCTCTGTTGCGCTAC 100 58
CCO40_RS11460 NONE
        speG 2384195 .. 2384207 +  -6.2  -2.80575   TGTCGATCATCCACC                CGGC TGACT GCCG                TGTAATCCAGCTTTT  50 220
CCO40_RS11475 2385208 .. 2385220 +  -6.3  -3.14132   AACGCTCTTTGACAT                GGATT AAT AATCC                TTACTCCCAAAGGGG  57 70
CCO40_RS11480 2387761 .. 2387776 +  -3.2  -4.56597   CGAAAAAATCTAAGC              CG-CCTG CTC CGGGACG              TTTTTACGCGCCCGG  64 28
CCO40_RS11485 NONE
        dmsB NONE
CCO40_RS11495 2391787 .. 2391804 + -12.7  -2.78349   CAGGTTAATTTATGC             GTGCGGG GCGA CCCGCAC              CTTTCGGGATTGTTT  82 33
        dmsD 2392448 .. 2392465 +  -8.4  -4.42788   TTAATCCCCACAAAA             GGCAGG ATTTTA CCTGCC              TTTTCTCCCATTGCG  84 37
        osmY NONE
        osmX NONE
        osmW NONE
        osmV 2396249 .. 2396259 +  -6.8   -4.2349   ACGCAATATTATATC                 GCAC ATA GTGC                 TTTTGCGTCTGACGC  72 87
        clcB 2398008 .. 2398019 +  -2.2   -4.4846   TTATAGGACAGCTAT                GC-GC GAC GCTGC                TTTCTTCTTCGCTTA  62 421
CCO40_RS11545 2402019 .. 2402051 + -11.3  -2.90496   GCCTGAAAAGAAATA      ATCCGGCGATAGC AACGTGC GCTATCGCCGGGC      TGGTTTCACGCCACG  78 35
         asr 2402670 .. 2402688 +  -8.1  -4.57569   AGTCGTAACATGCTG            C-GGCGCG CCCC CGCGCCCG             TTTTTACGGCGCTAA  82 40
CCO40_RS11560 2403754 .. 2403774 + -12.6  -2.62263   GGACTAATACGCGAA            TCGCTGCC TGACC GGCAGCGA            TCGTCTCAGGCAAAT  81 34
CCO40_RS11575 2405968 .. 2405997 +  -4.1  -4.36914   GCAAGGGAAGAAATC       CCCGGGAGCATAG ATAA CGATGTGACCGGG        TTTTCTGAGCGCAGC  64 83
        ydgH 2410521 .. 2410532 +  -5.8  -3.30124   TTCTCGCCGGATGGC                GGCA TACC TGCC                 TTATCAGGCCTACAC  56 62
CCO40_RS11595 2412529 .. 2412544 +  -6.8  -3.73224   TCAATACGACGACCA              GC-GCCC CCA GGGCAGC              TTTAATCACGAGTCC  62 389
        rstA 2413459 .. 2413481 +  -9.1  -3.01712   CTTTATCAAGTCATA           GTGGCGATG CTCAT CACCGCCAC           TGTTCAAAAAACAGA  68 64
       ompS2 2415073 .. 2415091 + -17.4  -5.45813   ATTAATTCTTCTCAA             GCCCGCCG TTT CGGCGGGC             TTTTCTTTTTTCATC 100 47
CCO40_RS11615 2416945 .. 2416993 +  -5.2  -2.75826   GCCTGCTTTTATAAC CCACCAGCG-GCGCTGACGGGAA ATCT TTTTCGTCAGCGCGCGATAGAGC TAATGTATTGAGATC  49 60
        rstB 2418357 .. 2418372 +  -2.6  -3.25102   GAGCGGCGGGAACTG              TGCTAT ACAG ATAGTA               TGTTGTAACTAAAGT  45 60
         tus 2419410 .. 2419434 +  -8.5  -4.07535   GGTATCCTAATGCCA          CGGCTGAGGCT TTG AGCGTCAGCCC          TTCTTTATGCGCCTT  77 108
        manA 2423974 .. 2423995 +   -13  -4.38116   AGACGTAAAACTCCT           CCAGGCGG TTTAAT CCGCCTGG            TTTCATTTTTATGGA 100 83
CCO40_RS11645 2425845 .. 2425856 +  -4.4   -3.9941   GTCCAAACCACGCCC                CCAT CGCA ATGG                 TTTCGTTGTAACAAA  60 343
        malX NONE
CCO40_RS11660 2429704 .. 2429714 +  -2.6  -3.54638   AACGTAATGACTCCG                 TTTT TGC AAAA                 TTTCCAGAGCATTAT  48 168
         add 2430855 .. 2430890 +  -7.6  -3.06133   GAGAAATGCGACATC    TCAGGCAAGACACAGCG TCG CGCGATGTTTTGCC-GA    TTCCATGCCCAGTTC  60 100
         blr 2432438 .. 2432465 +  -6.2   -5.3472   ATATTCCCTTTTTAC        CTGCACCCCTGA CCTC TCACTGGTGCGG         TTTTGTTTATTTTTT  91 235
        ydgT NONE
CCO40_RS11685 NONE
        rsxA NONE
        rsxB NONE
        rsxC NONE
        rsxD NONE
        rsxG NONE
CCO40_RS11715 NONE
         nth 2439889 .. 2439902 +  -5.3  -3.80114   AAATTCTATCTATCC               GTGAT CAGG ATCAC                TTTGATAACTTCATG  59 192
        dtpA 2441852 .. 2441874 + -13.5  -6.17184   GGAAACAACATTCAG           GCCGCTAAC TGTGC GTTAGCGGC           TTTTTTTTTGCTCGT 100 48
        gstA 2442549 .. 2442578 +  -6.4  -2.93708   AATTAATGTCATGTT       GCCGGATAGC TCGCTGTACC GCCATCCGGC        CTCTTTTTAGCAGCA  55 35
        slyB 2448206 .. 2448230 +  -3.6   -3.5774   CCAACGTGCGTACCA         GCGAT-GGC TGCTCAAT GCCTATCGC          TTTAGCCAATTGAAT  51 320
CCO40_RS11770 NONE
CCO40_RS11775 NONE
CCO40_RS11780 2451782 .. 2451802 +  -5.3   -4.3665   GGACATGTTATCGCC            GCCCACATG GAT CATGAGCGC            TTTATCTTTCACTTC  69 76
CCO40_RS11800 2454183 .. 2454202 +  -6.4  -5.41941   AGACCATCATTGCAA            CGCCTG AGCAGTAA CAGGCG             TTTTTATTTCCTTTA  91 12
CCO40_RS11805 2455362 .. 2455383 +  -7.3  -2.97058   CTGTAATTTCATTGA           TAGCGGC CTCACATC GCCGCTA            TACTTTGAATATCTT  59 35
        gloA 2455834 .. 2455861 + -14.8   -4.2828   GGGTAACTGATCCCC        CGCCGGGCGCAG GTCA CTGCGCCCGTTG         TTTTACTGCATCCCG 100 31
         rnt 2456620 .. 2456637 + -11.3  -4.05446   GATGGCGGTAAAAAA             GCGACCT TTAC AGGTCGC              TTTCTCCTTGCACAG  91 69
CCO40_RS11825 2458161 .. 2458189 + -13.3  -4.20868   ACAATTCGCTAATAT        TTTATCCTGTCGT TTA ACGACAGGATAAC        TTCTTCTTTTGCGCC 100 29
        sodB 2458875 .. 2458896 + -14.5  -4.07885   GCATAAGTCTGAGTA           CGCAGAAGG TACG CCTTCTGCG            TTTTAGAGAGGGATA 100 35
        purR 2460450 .. 2460463 +  -4.5   -4.2558   GCAGCCATGTCAGCG               CG-GGC GAG GCCTCG               TTTTGCTGCCACGTC  66 117
        punC 2462804 .. 2462823 +   -10  -2.91276   ACGTCGGATAACTGG            CTCACGGA ATTG TCCGTGGG             ATTTCTCACAAAGCC  72 224
         cfa 2464048 .. 2464072 + -14.3  -3.72228   TTCCTCGCTAATCAT          CTCCCCCGCAT TTC ATGCGGGGGAA          TCTTATTTTCCGTTA 100 30
        mdtK 2466325 .. 2466344 +   -10  -4.39828   GCGATAATACGACGA            TAGCCGTC GCAT GGCGGCTA             TTTTCTCGACATGTT  87 34
CCO40_RS11870 NONE
CCO40_RS11875 2467047 .. 2467057 +  -6.8  -3.17392   ATAGCCAAGACAAAC                 CGCA ATA TGCG                 TTGGATTACGCACTA  56 441
CCO40_RS12030 NONE
CCO40_RS12035 2492267 .. 2492282 +  -3.2  -2.78438   ATGATATAGTAGAAT              CCCCTT ATTT AACGGG               CTTTACCATGTCGTA  43 181
CCO40_RS12040 NONE
        mlrB 2494582 .. 2494599 +  -7.7  -5.00616   ACGTTGTTCGTATTC             TGGTCTC TGGC GAGGCCA              TTTTTTCGAAACGCC  91 457
        ttrB NONE
        ttrC NONE
        ttrA 2502161 .. 2502174 +  -2.3  -2.73067   TCATTTGGGGTTACT               TCCGG TTGA CCGCA                TAATCTGTGATTGAA  40 263
CCO40_RS12080 NONE
CCO40_RS12085 NONE
CCO40_RS12090 NONE
CCO40_RS12095 2506571 .. 2506592 + -14.4  -3.28712   CCCACTGTTGCGCAA           CGCCGCCC CTGTTC GGGCGGCG            TTATCGCCAGCGACA 100 58
        pykF 2508385 .. 2508399 +  -8.5  -5.99154   AATTTGTTTAAAAAA               GCGCC CTTCC GGCGC               TTTTTTTATTTAATC 100 58
         lpp 2508909 .. 2508949 + -17.1  -2.87132   AAGTAATAGTACCTG  CGTAATAAAAATGGCGCAC ATT GTGCGCCATTTTTTTTACC  TATATAACCACACAA 100 35
CCO40_RS12110 2509244 .. 2509262 + -14.6  -4.41616   ACGCACGATATAAAA             TGGCGCAC ATC GTGCGCCA             TTTCTTTACCCACAT 100 45
CCO40_RS12115 2509564 .. 2509582 + -14.6  -5.64274   ACGCACGATATAAAA             TGGCGCAC ATC GTGCGCCA             TTTTTTTGTCCGTCG 100 45
CCO40_RS12155 2518311 .. 2518323 +  -6.2  -3.30124   GTAACATAGCCGGAT                GGCG GCTAA CGCC                TTATCCGGCCTACAC  59 277
        ydiK 2523483 .. 2523509 + -15.8  -3.56862   CAAGCTGTCATAATC         CCGTCGGGCGGC ATT GCCGCCCGATGC         TTTAGCGACGTTTAT 100 28
        rprA 2523892 .. 2523913 +  -9.5  -5.21709   GTCGAAACGGTGTCG           GTGGTGCTA TTTA TAGCATCAC            TTTTTTCATATAAAA 100 147
CCO40_RS12185 2524423 .. 2524433 +  -5.4  -2.62616   CGTTCAGGCGGCATC                 TCTG AGT CAGA                 TAATATGAAAAATCG  50 151
CCO40_RS12190 2525879 .. 2525895 +  -5.1  -3.34239   TCAATGCAATAAACC              TGGCATT TTA AACGCCA              TGTTATGTACATATA  54 255
CCO40_RS12195 NONE
        ydiB NONE
        aroD 2529050 .. 2529060 +    -4  -3.33696   GTTATCTGATATGAA                 TATG TTC CATA                 TTCATTGAAAGCCGC  50 91
CCO40_RS12210 NONE
CCO40_RS12215 2531913 .. 2531960 +  -7.9  -2.54801   AGGATCGTACCGGAA C-GTCTTATTCGGCCTGACTGCT TTAC GGCA-TCAGGCCGAATAAATCAG ATATATTTCGCCGTC  59 40
CCO40_RS12225 NONE
CCO40_RS12230 NONE
CCO40_RS12235 NONE
CCO40_RS12240 2536742 .. 2536754 +  -5.5  -3.53012   TCCCAGTAGGCGTTA                TTGGC GCA GCCAG                TTTGGACACGGACAG  57 86
        fadK 2538564 .. 2538593 + -19.3  -3.08283   CTGCGGTATAAATTG       CCGGATGGCGACG TTAA CGCCGCCATCCGG        TATTACACTACTTCT 100 30
        ppsR 2542146 .. 2542157 +  -4.4  -3.80516   TAACCGCAGGATGTA                CTAG CAAA CTAG                 TTTAATGGGTTGGTT  58 22
        aroH 2543357 .. 2543379 + -15.6  -4.21631   CCGCTTTTAATAGCT           CGCCCATCCT GCC GGGATGGGCG           TTTCTTCGATGCGTT 100 31
        hemP 2543701 .. 2543734 +  -3.9  -2.52676   TGTTAACCAAATAAC    G-CTG-CGCCAGCAG ACGATG CTACTGGCGTCAGGC     TAACTTGAACAACTG  44 27
CCO40_RS12340 2558669 .. 2558685 + -15.1  -4.92385   AATAAATAAGTTATA              CGGCGGC AAT GCCGCCG              TTTTATTTGGCTCTG 100 32
CCO40_RS12360 2562058 .. 2562069 +  -5.8  -2.87344   TCGCGCTGACGATAA                CCGT TGAA ACGG                 TCTGTCAGCCAACTG  51 453
        pfkB 2563704 .. 2563719 + -11.8  -3.01791   AAAATCGGTTAACGG              GCGGCG CATC CGCCGC               TGTTAAAAAGACAGT  81 71
        ghoS 2564070 .. 2564080 +  -4.6  -3.50466   CCGCCGCGGCGCGTC                 CGCG ATG TGCG                 TTAGTTCGTATTTTT  54 50
CCO40_RS12380 2565023 .. 2565045 + -12.1  -4.81851   TATAGGTACAGCCCA           TGCCGGATA CGCGC TATCCGGCA           TTTTTCAGTTTACAT 100 36
        hxpB 2566441 .. 2566465 +  -7.8  -3.53012   GTCAACGGGCAATTA         GCCGCTGAGCC AGAC GGCA-AGCGGC          TTTGACAGAGACAAA  67 58
CCO40_RS12395 2567237 .. 2567251 +  -2.8  -2.52516   TTGCGCGAACAGAAT               CGCT AAAACAC AGCG               CTTCATAATAAAAAA  40 117
        tcyP 2568737 .. 2568767 +  -9.8  -5.84381   AAAATGTCTGTCACT       AAAAACGCCGGT CTCCAGT ACCGGCGTTTTG       TTTTTTTCTTAGTCA 100 89
        katE 2571650 .. 2571668 +   -16  -4.62069   AACAGCAATAAATAT             CCTCCGGC ATA GCCGGAGG             TTTTTCAGATGCGCC 100 40
        nadE 2579359 .. 2579385 +  -3.7   -2.7535   GTACTTCTACTGTTG         TGCCGGATA TCGCTCGTC TATCCGGCC         TCCTCTCTTCCCAGC  45 43
         cho 2580424 .. 2580437 +  -3.8  -4.36127   TGCGGAAAGTTATTC               TGCC GCAGCA GGCA                TTTTACCTTCTTGCG  64 106
        xthA NONE
CCO40_RS12500 2589166 .. 2589183 +  -4.1  -3.53012   ACATTCACCTGAATA             TCAGGAC GACT GTTCTGG              TTTGCCAGCCCGACC  51 184
        gdhA 2590869 .. 2590891 +  -7.6  -5.41143   TTATTCGGTCTGACG           GCCTGTCTCC TCA GCAGGCGGGC           TTTTTTTGCCCGCTC  95 70
        sppA 2596567 .. 2596607 +  -8.3  -2.79276   GCTTCATCAATAGCC  ATACCGGATGGCGGC GTCTGCTCATA GCCGCCATCCGATAA  TCATTAATACGTCCT  64 42
        ansA NONE
        pncA 2598827 .. 2598854 +  -3.3  -4.15514   TCGGTATTGTGCCGC        GCCTGCCATAG CATCAC CAGTTGCAGGC         TGTTTTCTTTCTGTT  58 507
        gapA 2600793 .. 2600810 + -11.3  -5.95166   CACAGTCATTGGTAA             GAGCGAC TCAG GTCGCTC              TTTTTTTTGCTTAAA 100 51
CCO40_RS12560 2602024 .. 2602072 +  -3.1  -4.37886   CTATAGGATCTGAAA GGCGTCAGC--CGCCATCAGGCA TGACC TGCCGGATGGCGGCGCTTACACA TTTTATCCGGCGTCA  62 63
        yeaG NONE
CCO40_RS12585 2609048 .. 2609073 + -11.9  -3.91897   GTGCATAACCATAAA         TCAGCCCGTAA TGAG TCACGGGCTGA          TTTATCACTAACAAG  93 33
        dgcJ NONE
CCO40_RS12600 2611897 .. 2611927 +  -2.5  -4.62069   CCTGTTAGCAATACG       CGGCGTTGATG GCAATTTAA TGACAACGCCG       TTTTTCACGTAGAGA  65 180
CCO40_RS12610 2612516 .. 2612537 + -11.5  -5.03715   CGCCCGTCAGATACT           GGCCTGGCG TCTG CCCCAGGCC            TTTTTTAAACATGGT 100 43
CCO40_RS12620 NONE
CCO40_RS12625 2615146 .. 2615158 + -10.5  -3.91716   CCGTAACCAGCCACA                GCGCC CGA GGCGC                TTCTTTCGGCAGTAA  80 148
CCO40_RS12640 2616024 .. 2616054 + -14.3  -2.90219   TAAATTCATTTTGAA       TAATAAAGGCTAC CTGTC GTAGCCTTTATTA       TCTCTGAAAGTTCTG  89 115
CCO40_RS12675 NONE
CCO40_RS12680 2620379 .. 2620403 + -12.1  -3.41693   TATGAAGGGTATAAA          CAAGGGAGGGG TTA CTCCTCCCCTG          TTCGTTAATAATGCA  85 233
CCO40_RS12715 2625492 .. 2625513 + -15.9  -2.52464   TCTCTGCCGACAATA           CCGGGAACC CATG GGTTCCCGG            TGCGTTAACGGCGAC 100 43
CCO40_RS12745 2631347 .. 2631364 + -14.1  -4.90296   CAATAACAACAGTAA             GCCGGCG ATGC CGCCGGC              TTTTTATCCCATTTT 100 35
CCO40_RS12750 2632024 .. 2632058 + -13.6  -2.96444   AATCATGACTATTCG    GCCAT-CCCGGCGTG AGAGAG CACGCCGGGCAAGGC     ATTATTATTCCAGCG  87 33
CCO40_RS12770 2635688 .. 2635720 + -13.4  -3.05384   ACGATCACCGGCCAA      CCGCGCCAGGGTCT TGCAT ACGCTCTGGCGCGG      TTAAATCCCCAGGCC  86 295
        pagD NONE
        cspF 2638720 .. 2638730 +  -2.6   -4.3129   TCAGTGGCGAAAATC                 TAAA GGA TTTA                 TTTTGCTAATGACTC  60 134
CCO40_RS12795 2639570 .. 2639605 + -10.5  -2.94329   CGCTGTGAAGAGAGT    GCCGCTAACCTCTTG ACACGA CAACAGGTTAGCGAC     CTTTACTTCCACGTG  72 49
        msgA 2640014 .. 2640031 + -12.7  -2.89191   ATGTCCGATCGAAAA             CAGCGCC CTGA GGCGCTG              TCTGTGACGATATAA  82 63
CCO40_RS12805 2641328 .. 2641340 +  -3.3  -4.04174   GGCACTGCTTGAAGA                CAGCG AAT CGCTA                TTTCATTCTCTGACA  57 99
        rluE NONE
CCO40_RS12830 NONE
CCO40_RS12835 NONE
        mnmA 2648566 .. 2648615 +  -2.8  -4.93877   GGTCTGATTATTCAA TACACAACACCATTCAAGTCGC CTCAAA GCGGCTTAAAAGATGAAGTGTA TTTTATTTGATACAA  70 34
        hflD NONE
        purB 2650668 .. 2650696 + -12.6   -2.7955   TAAATAATGCCTGCC        TCACCCTCTTTT CTTCA GAAAGAGGGTGA        CTATTTGTCTGGTTT  82 34
        phoP NONE
        phoQ NONE
CCO40_RS12865 2654452 .. 2654467 +  -4.6  -4.27117   ACAACACCATTGATA              CGTCAG ACTG CCGACG               TTTATATTCTGCCAG  66 355
        potA NONE
        potB 2659000 .. 2659025 +  -6.3  -2.53263   ACACGCATCCAGGCA         TGAAGTTTATT CAAG GGTAAACTTCA          TGCCTTCGGCATAAA  53 62
        sifA 2660484 .. 2660497 +  -6.7  -2.83867   TAAAATTCGCGGCTT               CAAGC GGCA GCTTG                CTTCTTCCTGGCTGC  56 207
        potC 2661387 .. 2661403 +    -5  -2.71011   CTCGTGATAAAACCA              AGGGCC GATAA GGCCCG              TAATTCAGGGGACGT  49 15
        potD 2662631 .. 2662641 +  -4.6  -3.06831   CTCTTCAAACTCGCT                 GCCG ACC TGGC                 TTGGCTCAAGATTCA  47 188
         mfd 2671258 .. 2671286 +  -6.7  -2.85069   ATTGCATAAGCGTCA       GGTCGGGCGTCA TTACTC TG-CGTCCGGCC        TAATCTTTACAAATT  56 32
CCO40_RS12935 2672384 .. 2672417 + -12.5  -5.18726   GAATAGCTGACCGAC     AAAAAAGCCTCGCGA TGCA TCGCGAGGCTTTCTC      TTTTTATTGTGGCAA 100 45
        comR 2673621 .. 2673647 +  -7.9  -2.52896   TTCGGATAAAAAAAA         GCCCCTCAGCC TGAGC GAATGAGGGGC         TAACTTGCAGAGTAC  59 51
        fhuE 2682300 .. 2682317 + -12.7  -3.44146   AGCGCCATTAAAAAA             GGCAGCC GAAT GGCTGCC              TTAATTCTCCCCAAC  93 66
CCO40_RS13065 2695659 .. 2695673 +   -10  -4.13945   CTACAGCAGTAAACG               GCCTAC TCT GTAGGC               TTTTCAAATACCCCT  82 29
         rne 2701811 .. 2701828 + -12.7  -5.25803   AAATGCTGATACAAA             GCCGACC GCCA GGTCGGC              TTTTTTATGCCCCTT 100 44
        flgA NONE
        flgM NONE
        flgN 2713576 .. 2713603 + -10.7  -2.64472   CCTGAATGCCTTGTA        G-GCCTGATAGC ACAGC GCTATCAGGCAC        TGAATTTACGCCGTC  74 74
        mdtH 2719062 .. 2719084 +  -5.4  -2.86492   AAACGCACACCGCGC           CGGATGCTGG AAC CCGGCGCCTG           ATTTGATACCTGTCG  51 2
        grxB 2719806 .. 2719828 + -10.6   -4.7657   ATCTAACGCCCGCCA           GGCGGCAA CCCTTTC TTGCCGCC           TTTTTCAGCTTTTTC  95 35
CCO40_RS13190 2720489 .. 2720504 + -11.8  -5.47218   CCAATTGATTTCGGA              GGGCGC GCTC GCGCCC               TTTTTTTACGTGCAA 100 33
        pyrC NONE
        dinI 2721977 .. 2721992 + -11.8  -5.63517   CAGTGATGTATGTTT              GCCGGG TCGC CCCGGC               TTTTTTATTTGCGCA 100 52
        bssS 2722518 .. 2722533 + -10.4  -2.73799   GCTCCCCCTCTCTCA              GGCACC GTAA GGTGCC               TCACTTATTTCTGGC  71 49
        solA 2723731 .. 2723749 +  -9.5   -4.1822   TAGCCAATAATTTGT             CGGCCCC GTAAA GGGGCTG             TTTATTAAGGTAAGC  84 31
CCO40_RS13215 2723970 .. 2723980 +  -4.6  -3.28791   TAATGCCAACTCCTG                 CCGT TGT GCGG                 TTATCAGGGGGAAAT  52 116
CCO40_RS13220 NONE
CCO40_RS13225 2725534 .. 2725545 +  -2.2  -4.67904   TGGATAAACAGCAGA                TGGC AACC GTCA                 TTTTTGCAGTTGGTA  65 273
CCO40_RS13235 2727536 .. 2727555 + -12.2  -4.69464   GCGCTATTGACAGGA            TTGCAGCC GTCA GGCTGCAA             TTTTTCCCCTCTTTT 100 31
        mdtG NONE
CCO40_RS13245 2729609 .. 2729627 + -10.3  -4.62783   ATTTCACTATAAAAA             TACCGGC ATCAC GCCGGTA             TTTTTCACCTCACTC  91 279
        mdoC 2735215 .. 2735245 +  -8.2  -4.42464   CCGCCAACCGTACCA       GAACTCGCTGCCAG AAA CGCGTAGCGGGTTC       TTTCTTTAACACCTT  83 86
        csgD NONE
        csgE NONE
        csgF NONE
        csgG 2742131 .. 2742151 +   -14  -5.86976   GATCAATACGACAAA            GCGTGGGG AAGAA CCCCACGC            TTTTTTATTTTGTGA 100 39
CCO40_RS13340 2745416 .. 2745435 +   -10  -4.96646   ATATTTAAGTTGAGA            GCCTGTAC AGAA GTACGGGC             TTTTTGCTTATATGG  93 40
CCO40_RS13345 2745601 .. 2745620 +   -10  -4.96646   ATATTTAAGTTGAGA            GCCTGTAC AGAA GTACGGGC             TTTTTGCTTATATGG  93 40
CCO40_RS13350 2745785 .. 2745804 +   -10  -5.82316   CATATTTAAGAAAGA            GCTCGTAC GAAT GTACGGGC             TTTTTTTTACATAAT 100 39
CCO40_RS13375 2751771 .. 2751785 +  -7.1  -3.54129   GGCAAATACGATCCC               CAGGC CTGAA GCCTG               TTTGAACACAATATC  65 116
CCO40_RS13380 2753664 .. 2753701 +  -4.3  -3.90707   GTCATAAGTTGGCAA   CGCGATGTAAATA TTCCCCCTCCTT TACTTACATCGCG    CTTTTTTTCATGCCG  59 184
CCO40_RS13385 2754772 .. 2754782 +  -5.4  -2.91264   GCTCTGAAAGTCAAT                 GCTA TAT TAGC                 TGTATGCGTGGAGCG  51 125
        putA 2762368 .. 2762385 +  -9.1   -4.7373   ACTGTGGTTAATTAA             GGCTCCG TCAA TGGAGCC              TTTTTACTCGCGTCA  90 42
CCO40_RS13405 2763000 .. 2763017 +  -3.4  -4.84527   CCCGCTGTGCACCCA             TCCG-GC AATCA GCGCGGA             TTTTTCATCTATCAA  74 220
        wrbA NONE
CCO40_RS13425 2764971 .. 2765009 +  -8.1  -4.09511   GAACGTAAAAACGTA  TAACACAAACGCCCCCGC CTGC GCGGGGGCATATG-GCTA   TTTTGCAGCAGTGTT  74 23
        cbpA NONE
        cbpM 2771276 .. 2771303 + -14.9  -2.78679   GATAAAGGCAATAAA        CCGAGGGTGGGC TTTCT GCCCACCC-CGG        ATTTACATGCACCCG  89 46
        iraM 2772633 .. 2772655 + -17.8  -2.71325   TCGCCAAAAGCATAA           CGGGCTGACA TCA TGTCAGCCCG           TGGGTTTATCCCTGC 100 387
        hpaR NONE
        hpaB NONE
CCO40_RS13525 2784829 .. 2784861 +   -12  -2.50443   GAAGATTTTTATTCC      CGCCGCGATGTTTG CTCGC CATAAATCGCGGCG      ATTAATAAAATCTAA  79 100
        hprR NONE
CCO40_RS13540 2787701 .. 2787714 +  -6.7  -3.35798   TGTTCCCCTTCCCTG               CCACA GGGC TGTGG                TTATCAATACAACCT  61 56
CCO40_RS13545 NONE
CCO40_RS13550 2789978 .. 2789990 +  -7.7  -3.15503   TCACATCCTTTTAAA                GGGTT GTT AACCC                TGTTGAATGTTCCCA  64 472
        sopB NONE
        sigE 2792197 .. 2792215 +  -2.4  -4.84527   TCCTCTTTCTCATTT             TGCTCT GTTTGCG GGAGCA             TTTTTAGTGTGTAAG  72 144
        pipB 2793676 .. 2793692 +  -3.1  -3.31188   CTAAAAACACTATTA              TTGTTTA ATT TAAATAA              TTCATAATTGTAGTC  48 200
        pipA 2794528 .. 2794549 + -10.1  -4.04806   GCCTAAAAAAACAAA           GGGGCTACC TTTC GGTAACCCC            TTGTTTAATCTGGCG  82 150
        yccA 2795721 .. 2795738 + -12.7   -5.0917   CATTCCCCTCTTCCA             GCCCTGC TTAT GCAGGGC              TTTATTTTTTGCTAC 100 45
        tusE 2796190 .. 2796206 +  -7.9  -3.55801   TTGTCCACACGAGCA              GAGCGCG GCC CGCCCTC              TTTCAGCCACTTGAT  62 98
        rlmI NONE
        hspQ 2799603 .. 2799640 +  -8.5  -4.86731   TACGTAACTGATTGT   ATTTAAAAGGCCGGAAA GCGA TATCCGGCCATTTAAAC    TTTTATTTCGCCAGC  89 30
CCO40_RS13630 2800956 .. 2800967 +  -2.2  -3.05816   AAGCGCTTCCAGTAA                TCTG TAGA CAGG                 TTAACTACGGAATCG  42 89
        mgsA 2801452 .. 2801478 + -15.8  -2.76737   CTGAAATAAACGCTA         CGCGGGCGGGAT GCT GTACCGCCCGCG         CTTTAGGGCTTCCTC 100 32
CCO40_RS13645 NONE
        yccS 2806293 .. 2806328 + -14.1  -2.55351   GCGAATGAGCCCAGT   CGGCAAGCTCCTGGCGA CGAC TCGCCGGGAGC--GCCG    CTTCATGTACGCCGA  81 41
        sulA 2807664 .. 2807697 +  -5.4  -4.80882   GTGCTAACGTTTTTT     TTGCG-AGAACGCTT GTCAG AAGCGGTTTCCGCAA     TTTTTGCTGTACGAT  76 94
        ompA 2809024 .. 2809038 + -12.8  -5.23316   CCGTCTGATAAAAAA               CCCCGC GTC GCGGGG               TTTTTTGCTCTGGTC 100 45
CCO40_RS13675 2811465 .. 2811479 +  -5.7  -2.77895   GCTGAACGCTTTTAT               TCCGA ACTGA TCGGA               CTTGTTCAGCGTACA  50 16
        fabA 2812117 .. 2812141 + -18.7  -4.82901   AAAGCCCATAAAGGC          GAAACCTCCGC ACT GCGGAGGTTTC          TTTTTCTAAAGAGAC 100 81
CCO40_RS13715 2821609 .. 2821619 +  -2.4  -4.00348   TTCAATACCAGCTCC                 GCGC GTT GCTC                 TTTGGTTAATTCGAA  54 341
        pncB 2827309 .. 2827335 + -12.3  -3.41745   TTAACCATGCCTGTG         CGAAGCGCCCG GAAAG TGGGCGCTTTG         TTACTCTTCTGACCA  90 37
CCO40_RS13750 2831089 .. 2831108 +  -5.7   -4.6526   CCTAAATTCTCAATG            GTTCGCG AGCAGG TGCGAAC             TTTTTACAGGTTTCT  74 65
        asnS 2832669 .. 2832685 + -13.7  -5.78622   TTACGTCACACTCAA              GGCCAGC TAT GCTGGCC              TTTTTTTTCGCCTGA 100 44
        ompF 2834381 .. 2834396 +    -9  -5.77988   TTTATGCCTCAAAAA              CAGGAC TTCG GTCCTG               TTTTTTTATCTCTCT 100 58
        aspC 2835748 .. 2835778 + -14.2  -3.50853   GACTGGCGTGACCGA       TAAAAAAGCCTGCA ATG TGCAGGCTTTTTCA       TTCTGCTTACCAGAC 100 50
        elyC 2847840 .. 2847864 +    -7  -3.36991   CCCGGGGCCGACCAT          CGCCAGAAGC TGATC GCTACGGGCG          TCTTTAAGCATACTG  58 251
CCO40_RS13880 2865460 .. 2865480 + -10.4  -5.26247   GGCTGCGTTATATTA           CGGGG-CGC CTTT GCGGCCCCG            TTTTATTTATTTTCG 100 77
        focA 2866708 .. 2866725 +    -2   -3.1247   AGTAAATAAAAAATC             CACTTA AGAAGG TAGGTG              TTACATGTCCGAGCT  42 63
        pflB 2869055 .. 2869074 +  -7.8   -5.2197   AAGCGTACAAAAAAA            GGCTCCAT GTCA GTGGGGCC             TTTTTAATTTTTATA  91 68
        pflA 2871455 .. 2871476 + -11.6  -4.39568   TTACCCGCTTTTAAA           CGGCTACC CATGAC GGTAGCCG            TTTTGCTGTCTGGAT  93 53
        trxB 2888946 .. 2888962 + -12.3  -4.89063   AACAAAAGTAAAAAA              GGCGACT ATA AGTCGCC              TTTATTTTTGCGTCG 100 56
        cydD NONE
        cydC NONE
         aat NONE
CCO40_RS13975 NONE
        infA 2893833 .. 2893849 + -10.1  -5.10497   GGCGGCTGGATAAAA              GGTCGGT TTA ACCGGCC              TTTTTTGCGTCCATT  93 62
CCO40_RS13990 NONE
CCO40_RS13995 2896471 .. 2896494 + -13.2  -3.69364   CAGCGCTAATTTGCC          TCCCCGCGCCA GTT TGG-GCGGGGA          TTATGTCTATTGCAT 100 32
CCO40_RS14000 2896716 .. 2896735 +   -10   -4.9755   ATATTCAAGTTGAGA            GCCTGTAC AGAA GTACGGGC             TTTTTGCTTATATGT  93 40
CCO40_RS14005 2897747 .. 2897757 +  -5.4  -3.27704   ACGTAGAAAGTGTGA                 TGCT AAT AGCA                 TTCGCTTTCGAAAAT  56 74
CCO40_RS14010 2898228 .. 2898245 +  -9.8  -3.86346   TCCGGCGTAAAAAAA             CCGGGC GCTAAG GCCCGG              TTTGTACGACAGTGA  81 196
        cspD 2901478 .. 2901498 + -12.6  -5.27335   ATCCAGGAGGCAAAA            TGCCAGCC CGATC GGCTGGCA            TTTTTATTTAACGCC 100 62
CCO40_RS14045 2905986 .. 2906000 +  -4.2  -3.95324   CAGCGCAGGCAACGC               CGTGAG ATG TTCGCG               TTCTTCTTCCCGATC  60 283
CCO40_RS14055 NONE
         hcp NONE
         hcr 2911298 .. 2911309 +  -7.2   -2.7464   CCCGGTAAGCGTTAG                CGCC ACCG GGCG                 ATTTACCACTCGCTT  58 63
        poxB NONE
        ltaE NONE
CCO40_RS14080 NONE
CCO40_RS14085 2916853 .. 2916866 +  -5.2  -3.78329   CGCTGCTGCTCGCGT               GCCG TCATAT CGGC                TTTGACTTCATAGCC  61 149
CCO40_RS14100 2918561 .. 2918591 +  -7.7  -3.97709   CCATAACCCCGTAAA      TTGTCTGGCATTCT GCCC GGGATGCC-GACAA       TTCTTCTTACCTACT  72 67
        artP NONE
        artJ NONE
        artQ NONE
        artM 2921710 .. 2921736 + -10.9  -5.68039   ATATTGAATAAACCC         GACGGACAAGT GGTTA ACCTGTCCGTC         TTTTTTTATCCATTT 100 118
        artJ 2922832 .. 2922852 +  -3.9  -4.93877   AGACCCAGACGGCGA            TACTGCTCC GCC GGAGCATCA            TTTTCTTTCATCAAA  75 272
CCO40_RS14195 2935459 .. 2935495 +  -7.1  -5.41143   CTTTTCGCCTGATTG    CTCTGGCAACGCCCTCT GAC GGAGGGCGCTATCGGCG    TTTTTTTCGCCGGTG  95 29
CCO40_RS14205 2938048 .. 2938058 +  -8.2  -3.09933   TAAAATCGCTTCACG                 CGCC AGA GGCG                 TTCGATCCGTTACAA  60 253
CCO40_RS14215 NONE
CCO40_RS14220 2940909 .. 2940925 +  -2.2  -3.48105   TAAATAGCCCATTGC              CGCC ACTTAACCA GGCG              TGTTTACTGACTTCA  47 186
        ybjG 2942978 .. 2943006 + -14.7  -3.70902   AAAAAAGAGTAATAT        TAAGCGCTCTGTA TGG TGCGGAGCGCTTA        TTTAACTCTCCAGGG 100 48
        deoR 2943789 .. 2943824 + -15.4  -4.17048   CTGATGTATTAACCG    C-CCGTAGCCGGATGCG ACG CGCACCCGGCAACGGAG    TTATTTTACGAGAAC 100 29
CCO40_RS14245 2946000 .. 2946015 +  -3.2  -3.03525   CAGGTCCGACACGCA              CATCGT AGAT ACGTTG               CTTTCTGTCACTCAA  45 123
CCO40_RS14260 2947562 .. 2947576 +  -8.6  -2.87132   GGATAGGCCGAAATA               CTCAGT CTG ACTGAG               TCTATAAAAAAGCAG  65 225
CCO40_RS14265 2949005 .. 2949024 +  -4.4  -3.21938   CTATCACACGCCCTT            TTTTAAAC CAGG GTTTGAAA             TTACTACCATTTTCC  49 513
        rimO 2957424 .. 2957444 +    -4  -3.63744   GCGCCGATACTGCGG            GCAGAC TCAATAAAC GTCTGC            TGTTTTAAGACCAGG  53 432
        moeA NONE
        moeB 2965611 .. 2965629 +  -8.8  -2.87564   GATAAACATACCGAA             GCACGGTT TAT GGCCGTGC             TGTATCAACAGATAA  65 51
CCO40_RS14345 NONE
CCO40_RS14350 2969256 .. 2969273 + -11.3  -3.14211   TGGCGCTACGTTTAA             CAGGCCT ACGC AGGCCTG              TTAATCAGAAGGGAT  81 81
CCO40_RS14360 2971643 .. 2971670 + -10.6  -3.02144   CTGCCCGCTTAACTG        C-GGTGCGCCC TTTGTCT GGGCGCACCCG        TCTTACCGGACCTAC  76 54
        ldtB 2974486 .. 2974512 + -19.6  -3.03243   ACAGACTCTGCCTGT         GAAGCCCGATAG ACA CTATCGGGCTTC         TCTTACGGCATCAGT 100 40
        mntS 2976448 .. 2976474 +    -8  -5.77632   TTTATTTTGCATCCT         CAACGGAAATGG CGC CCATTTCCCCTG         TTTTTTTGTGGTTTT 100 62
CCO40_RS14390 2978280 .. 2978297 +  -8.4   -5.0925   TCAGGCAAAAAAAAA             TCCGCC CCGAAA GGCGGA              TTTTTCATTTTCACC  91 49
        rhtA 2980175 .. 2980201 +  -6.8  -3.63515   TTTTTGTCATATTTT         TTCTCATTTT TTACATT AAAATGAGAA         TTATTACCCATCAAA  64 124
         dps 2981019 .. 2981037 +  -7.4  -4.19953   TAAGTCATCCCTATA             CCCCTG CCTGGCA CAGGGG             TTTTGCACTTAAATA  74 162
        glnH 2982121 .. 2982161 +  -9.9  -3.69216   AACGACCTGATGTTG GCTTGT-GGCCCGGT-AGTG AGGA CGCTCACCGGGCCTAC-AGC TCTTTTCCGTGACGG  77 41
        glnP 2982894 .. 2982905 +  -4.4  -2.95448   GTCGTCTTGAAAGAA                GGAT GAAA ATCC                 TGTGATTGAATTTAA  48 9
        glnQ NONE
        ybiO 2986169 .. 2986186 +  -3.5  -3.90707   ACCTGACGGCGGAAG             GATTGGCT TTC AGC-AATC             ATTTTTTTAATAAAG  56 224
CCO40_RS14435 2987486 .. 2987498 +  -4.9  -3.41693   GACAAGAAAGGTAAA                TTCAA CCG TTGAA                TTAATTAATAATCAA  54 147
        ybiJ 2988038 .. 2988059 + -13.7   -5.8187   TTGTTACCCTTATTT           GCCCGTCCG TCAC TGGACGGGC            TTTTTTTATTCGCTA 100 154
CCO40_RS14485 NONE
        cecR NONE
        hlyD 3002612 .. 3002628 +  -3.6  -3.65046   TTTAATGACGAGGCA              CGGCAT GAGTG AGGCCG              TTATTACGCTGCACG  51 14
CCO40_RS14500 NONE
CCO40_RS14505 3005525 .. 3005550 +  -8.3   -3.9941   TAAGGCGTTCACGCC         GC-CATCCGGCA TTA TGCCTGATGCGC         TTTGCTTATCAGGCC  76 75
CCO40_RS14510 3007060 .. 3007072 +  -4.8  -4.46212   CACGAACGCGTTGTT                GCCA CTTCA TGGC                TTTTCTCCTGAAGCA  68 388
CCO40_RS14520 NONE
        clsB NONE
CCO40_RS14530 3010172 .. 3010198 +  -5.9   -4.4009   ATAAATTTAAGCAGA        CGCGTTTTCGCT TTCC AGC-ACAACGCG         TTTTATCCGGTAAAA  70 37
        yvcK 3017010 .. 3017037 + -13.6  -2.90219   CTGCGCTTATCAAAA        GCCTGTTTACACC GAA GG-GTAAACAGGC        TCTCTCCCCCTTCTG  87 59
        bioA 3027520 .. 3027536 +  -2.2  -3.36803   TTTAGCCATTAATCA              GCGGTA AGCGA TGCTGC              TTCTGGCTACACTTC  45 29
CCO40_RS14620 3028442 .. 3028464 +  -5.5  -4.33417   GTCGGCAGGCTATCC          ACGCTGTGCG GGTG CGC-CAGCGC           TTTATTCTCGCTGGC  69 417
CCO40_RS14650 3036015 .. 3036049 + -13.5  -4.25104   CCGGTTCAGGCTTAT     AAACGGGCCGCCGCA GCAGA TGTGGCGGCCCGTGG     TTTTACTGCAAGCGA 100 49
CCO40_RS14660 3038579 .. 3038597 +  -3.8  -3.72695   TCCAGCACCATGACT             TTATCCGC CAG GTGGAGAA             TTTCATCGAGAGAAT  53 492
        modE NONE
        modF 3043427 .. 3043441 + -11.4  -3.29263   AATGTATTATCAGAA               TGGCGC CGC GCGCCA               TTCTGGAACCACTCT  83 40
CCO40_RS14695 3044521 .. 3044535 + -12.8  -5.44119   TCCGTTTCATTCCCA               GGCGCG TAA CGCGCC               TTTTTTTCGGATAAA 100 55
        galE NONE
        galT NONE
        galK NONE
        galM 3049126 .. 3049148 +  -7.7   -2.8001   GGTTATGCGTAAGCA           TTGCCGCCA ACACC TCGCGGCAA           TATAATGAGAATTAT  60 179
        gpmA 3049964 .. 3049978 +  -7.8  -3.30124   TCACCTTTGCCGGAT               GGCGGT ATA ACTGCC               TTATCCGGCCTACGA  65 41
CCO40_RS14760 3059170 .. 3059186 +  -3.7  -4.56597   CGACAGCGTCCAAAA              TGAAAGA AAT TCCTTCA              TTTTTAGCAACCAGA  69 199
CCO40_RS14770 NONE
CCO40_RS14775 3061441 .. 3061476 + -15.6  -4.57353   TACATTAATATTGGC    AATATCGGTCCGGTAG ACTG TTACCGGACCGATATG     TTTTCTATCCTGCGC 100 44
CCO40_RS14785 3063297 .. 3063314 + -11.3  -5.54907   AAAAGTCTGATAACG             GGAGAGC TTTC GCTCTCC              TTTTTATTTTGTCAG 100 48
        zitB 3064331 .. 3064357 + -13.6  -3.51934   ACCATTAACGGGAAA         GCGCGCGCGATC CTC GCTCCCGCGCGC         TGTTTATCCACAGGC 100 33
CCO40_RS14940 3090069 .. 3090098 + -17.9  -2.79535   AGCGTTAATTGACAA       CCGGATGGCGACG CAAC CCTCGCCATCCGG        TACATTTTCCCTTTT 100 33
CCO40_RS14945 3091339 .. 3091350 +  -4.4  -4.21194   TAAAACGGGCGTGAG                GACA GTGT TGTC                 TTTTCAATAATGCCG  62 120
CCO40_RS15040 3109775 .. 3109800 + -11.1  -2.87463   ATCCTGATAGCAGAA         TGCCCGGTAGT TTGC GCTACCGGGCC          TGTATCACGCCCCTT  75 34
        kdpF NONE
        kdpA NONE
        kdpB NONE
        kdpC NONE
        kdpD NONE
        kdpE 3119720 .. 3119745 +  -9.7   -2.7471   GTCATTTATTTTCGG         CGTCGCGAATA ATTA TTTTCGCGGCG          ATATTATATTTTATA  69 80
       speFL 3120350 .. 3120372 +  -2.8  -3.96148   ATCAGCGGGATAGCT           TTGATTTTTT CCG GAAGAATCAG           TTTCTCATGCGAGAA  54 328
        speF NONE
        potE 3123948 .. 3123976 + -14.5  -3.18657   CACGGCTGATGGCGC        GCCCGGGCTGCGG TAA CGGTAGTCCGGGC        ATTTTCACTCTTTGA  95 32
CCO40_RS15100 3124570 .. 3124585 + -10.4  -5.12068   CGTTAATACAAAAAA              GGAGCC GTAA GGCTCC               TTTTTCTTCCATATC  93 104
        ybfF 3127780 .. 3127818 + -13.1  -2.57244   CTAACTGATTAAAAA  C-TCATCGCCTGTGCGCG ATTA CGCGCGCGGGCGTTGGCG   TCGCTTCCTCGCTGA  84 37
        ybfE 3128233 .. 3128250 +  -3.4  -3.37755   CGTGTAGCAGAGCGT             GCAGTC CCGCGT GATTGC              TGTTTCCGCATATCT  48 63
        fldA 3129036 .. 3129052 +  -6.5  -4.55128   CAGTTTTATTAACAT              CTGCGAG AGA CTTGCGG              TTTTCATTTCGGCAT  76 185
         fur 3129629 .. 3129646 + -11.3  -5.39721   TAAATCTTTCGAAGA             GCCAACC GCCC GGTTGGC              TTTTTTATATCCTCC 100 44
        tcuR 3130629 .. 3130644 +  -3.2  -3.14683   CCGGTGAATGGCCAG              GCGCAA CCCT TTACGC               TTACTAAACCCCTGT  46 3
        tcuA NONE
        tcuB NONE
        tcuC 3134810 .. 3134828 +    -6  -3.74198   CCCGCACGCTTTCTT             CGTTAGCA AAT TGCTGATG             TTTGCGCTCTTTTTT  60 202
        nagB 3141888 .. 3141913 + -14.7  -2.87672   TCTGTAATGTTGTCT         CCGCCCCGC CAGTCAAT GCGGGGCGG          TAAATTTTTGATATC  89 34
        nagA NONE
        nagC 3144362 .. 3144378 +  -3.7  -2.86177   AAATTCCCTGGGTAG              TTCATGA CCA TCAAGAA              TGTAATCTGCGATAT  46 69
        nagD 3145127 .. 3145144 +  -6.9  -2.73124   ATCTAAACCTGTCCC             CTGCCCG ATGA CGCGCAG              CTTTCAGGCCTACGG  55 35
        asnB 3147088 .. 3147103 + -10.4  -5.60993   TTAACGATGACGAAA              GAGCCC TTAG GGGCTC               TTTTTTTATAGCAAA 100 42
CCO40_RS15205 NONE
CCO40_RS15210 NONE
CCO40_RS15215 NONE
CCO40_RS15220 3147684 .. 3147700 +    -3  -3.33815   CATCGAAGAAATCAT             CTG-GCT ACGT AGCTCAG              TTGGTTAGAGCACAT  46 39
CCO40_RS15225 NONE
CCO40_RS15230 NONE
CCO40_RS15235 3148006 .. 3148033 + -13.6  -3.30597   TACCCCAGCCACTTT        TAAAAAGCTCGC TTCG GCGAGCTTTTTG         CTTTTCTGCGTTTAT 100 30
CCO40_RS15240 3148797 .. 3148811 +  -4.2  -4.08216   CAACCCCAACGCATA               CTTCAG CGC CTGACG               TTTTAGCACGCCTGC  59 110
        miaB 3151544 .. 3151569 + -13.3  -3.23216   AGGAAAGGCAATAAT         GCCCGAT-GGCG CTA CGCCTGTCGGGC         TTCCTGGTCATGGCC  91 47
CCO40_RS15255 NONE
        ybeY 3153249 .. 3153281 +  -8.4  -2.57988   TGCAGAATAGTAGCT     TGCCGGATGGCGGCG CTTG CGCC-TTATCCGGCC      TACATTCATGCCTTT  63 31
        corC NONE
         lnt 3156158 .. 3156172 +  -7.8  -2.78715   CACAATAGCTATCAA               TGCGTC GAC GGCGCA               TATGATAAAGGAGTT  60 346
CCO40_RS15275 3157223 .. 3157239 + -12.3  -5.76949   GGCAACAATCTTCGA              GGGTAGC GCT GCTACCC              TTTTTTTTCGGAGTA 100 148
        gltJ NONE
        gltK NONE
        gltL 3159408 .. 3159429 +  -9.4  -2.90714   GCACTAATCTTCCCG           GCGCGCAT GTCAGA GTGCGCGC            TATCTCACGCTTTAC  70 34
        rihA NONE
CCO40_RS15300 3161728 .. 3161761 + -11.9  -3.51633   CAGGCATGACATTGA     TAAAGATCACCACGCC AGA GG-GTGGTGTTCTTTA     TTCTATGAACTCTCT  88 32
CCO40_RS15305 3163468 .. 3163482 + -12.8  -3.65529   ATTGACGAGCCGAAA               GCGCCG TAA CGGCGC               TTTCACTGCCCCTGT  95 17
CCO40_RS15330 3169103 .. 3169123 +  -4.6  -2.74012   AATCCCACCACTTCG            CCACTGTG ATACA CGCCGTGG            TGATTCAAATCCTGG  45 197
        leuS NONE
        lptE NONE
        holA NONE
        nadD 3179428 .. 3179445 +  -6.9  -2.85668   GTAACCAATGCCAGG             TCGCCTG TTGC CAGGCGC              TATCCTGTAACGCTA  53 290
CCO40_RS15385 3180981 .. 3180997 +  -5.1  -3.78934   GGTTTCGCCCATTGA              CAGCC CCCGACA GGCTG              TTATTCTCCGCAGCC  59 69
        rsfS NONE
        rlmH NONE
        mrdA NONE
        mrdB NONE
        rlpA NONE
        dacA 3187647 .. 3187677 + -13.5  -5.48825   TATACTATGCATCAG      TAA-AACTCCCGCC CTGT GGCGGGAGTTGTTA       TTTTTTTACGTAATG 100 76
        ybeD 3187976 .. 3187990 +  -2.1  -3.31461   ATTGTAATACATCCA              GA-CGG TTAC CCGGTC               TTATCCGGGTAACTC  45 34
        lipB 3188842 .. 3188856 +  -8.6  -3.10597   GCATGGCCTCTTCAG               TCCTCA TGA TGAGGA               ATTTTCCGTGAACAA  66 159
CCO40_RS15430 3190036 .. 3190060 +  -4.9  -3.38768   ATTTTACATTTTGCC          GGGCTGTCAGG CTG CTTTATGGCCC          TTATCAATGATATAC  54 98
        lipA 3191171 .. 3191185 +  -8.5  -5.58454   TTCAGGCAAAAAAAA               CCGGC AACTC GCCGG               TTTTTTTACTCTGCG 100 62
        crcB 3192826 .. 3192842 + -10.8  -4.20042   TTAAGCGCAAAAAAA              CCCGCC GAAAG GGCGGG              TTTTGAAATCTTGCT  88 37
        dcuC 3195614 .. 3195633 + -10.6  -3.02043   GGCTGATAGCCGGTA            AGCCGGGG CTCG CCCCGGCA             TCTTAACCCGGGCTT  76 35
        citC NONE
        citD NONE
        citE NONE
        citF NONE
        citX NONE
        citG NONE
        citT 3205108 .. 3205133 + -15.5  -5.37345   GTAGGTTAAAAATGA         TGCCGTTCAGG TTCA CCTGAGCGGCA          TTTTTTATGATTAAA 100 54
         rna 3206149 .. 3206171 + -12.7  -5.07652   ATCATGAGAGTTAAA           CCCTCGCCG CCAGA CGGTGAGGG           TTTTCTTTTGGGACC 100 179
         rnk 3206673 .. 3206692 + -12.2  -3.75897   TAATGCGTTTACACA            GAGGATGC CTGC GCATCCTC             TTTCCGTTAGCCCTT  93 58
        uspG 3208636 .. 3208662 + -20.2  -4.75372   GCTAAAAACTGACAC         GCCCTGCCAGGT CAC GCCTGGCAGGGC         TTTTTACTGCATCAT 100 49
        dsbG NONE
CCO40_RS15570 3218064 .. 3218074 +  -2.6  -2.69964   ATCCTTTATGTTAAT                 TATT TCG AATA                 TACTGTAGTTAACAC  41 147
CCO40_RS15575 NONE
CCO40_RS15580 3220261 .. 3220283 + -11.9  -3.01712   GGCGCGCAGCATATC           CGCCAGCGC CAGTT GCGCCGGCG           TATTGACGCAAAACG  76 353
CCO40_RS15590 3222565 .. 3222589 + -12.9  -3.19602   ACCTGTCATCCAAAT          GCCCTCTCC TTATTCT GGAGAGGGC          TATTGATGTAAAAAG  91 281
        fepB 3231003 .. 3231051 + -13.4  -3.13403   TGTTTTAGCCTTATC GGAGTCTTATCCGACTGACCAGA CAGA TTTTGTCAGTCGGATAA-ACGCC TCTTCATCAGCCAGC  91 33
        fepD NONE
        fepG NONE
        fepC 3235221 .. 3235240 + -12.2  -4.14739   CACACAGATGACAAA            GCCGGATA TCGC TATCCGGC             TTTTCGGGTAAATCA  93 46
CCO40_RS15675 3244472 .. 3244483 +  -4.4  -3.11289   GGAATTGGCAAAAAT                GATG CTGA CATC                 TCATTTTCCCCTTCC  49 70
        entD NONE
CCO40_RS15685 NONE
CCO40_RS15690 3246754 .. 3246786 +  -4.9  -4.29845   AATATCATACACCTT     CTGGTCGGTGT-CGA GCAGG TCGCGCGCCG-CCAG     TTTTAGCTTCCGTTC  66 157
CCO40_RS15700 NONE
CCO40_RS15705 NONE
        nfsB 3248970 .. 3248987 + -12.7   -5.1361   TAATCCCCTGCCTAA             GCCGGAC GCCC GTCCGGC              TTTTTTCACCTTTCT 100 38
CCO40_RS15715 NONE
CCO40_RS15720 NONE
CCO40_RS15725 NONE
CCO40_RS15730 3251650 .. 3251664 +  -3.4  -3.53444   TTGGGCTTCTTGCCA               GCGCGC TGG GCCTGC               TTTGACGAGAGGTAA  50 6
CCO40_RS15735 NONE
CCO40_RS15740 3253889 .. 3253904 + -11.8  -4.66609   AGGTCTTTCTTCTGC              GGGGCG CTAG CGCCCC               TTTTTCCCTGAACTA 100 116
CCO40_RS15755 3260812 .. 3260828 +    -8  -3.05844   GCCTTGTACGGACAG              GCCGAA CAGCA TTCGGC              TATTCGAATAAACGC  60 487
CCO40_RS15765 3263723 .. 3263737 +  -4.2  -2.63549   TAGTTCGCCCTCATG               AGTCAG ATG CTGACG               ATATTCTTCCGGATG  44 461
        rclR 3266733 .. 3266777 +  -3.5  -3.28712   CGGACGATAAACGTA CG-CTG-AACCCGCCTGCAGT TTGAC GCCGCAGGCGGGGTGCACACG TTATGCCGCAAGGCG  48 31
CCO40_RS15800 3268050 .. 3268079 +  -9.4  -2.96009   TCTTCGAAAAACATG       CAAAGCCTTGCA AGCCGA TGCAAAGCTTTG        TGTGTCCCGTTTTTG  70 310
CCO40_RS15810 NONE
CCO40_RS15815 NONE
CCO40_RS15820 3271202 .. 3271234 +  -9.1  -3.20858   ATGTATAATTAATGT      TCCCCGCCACC AATGGGTAACG GGCGGCGGGGA      TTCCTACATATCGTA  70 46
CCO40_RS22520 3272273 .. 3272292 +  -2.2  -2.90763   AAAATAGACGACATT            TTTGGTGAT GAT GTC-CCAAA            TATGTCCCATATGGA  41 512
        fimW NONE
CCO40_RS15845 NONE
        fimY 3274693 .. 3274704 +    -3  -3.59781   ATTACATAACAAATA                CTAA ACAA TTAG                 TCTTTCATATTATTT  50 226
        fimZ 3276100 .. 3276112 +  -2.6  -4.37092   GCGTGGCGTCACCGG                CGGC GTGAA GCTG                TTTTGTCGGCCAGGT  60 397
        folD NONE
        ybcJ 3283504 .. 3283537 + -12.5  -2.75307   TGGCCTGATACAGAG     TGCCGGATAGCGACGC AAA GCGTC-TTATCCGGCC     TGATTACGCTGTCTT  82 33
CCO40_RS15900 NONE
CCO40_RS15905 NONE
CCO40_RS15910 3285844 .. 3285866 +  -5.5  -3.97368   CGCGCTTCAAACGCC          TC-GCCGCCC GCCG GGGCCGCTGA           TTTATCCGTTCCACG  63 449
        ppiB NONE
        lpxH 3288338 .. 3288348 +  -2.4  -4.08394   AAGCAGCGTGTCCCG                 CACC ACA GGAG                 TTTTAAGACGCATGT  55 121
        purE NONE
        purK 3289997 .. 3290011 +  -7.1  -2.80816   AGATGCAGGTTCCCG               CCCTG CCCGC CAGGG               TATCGTCAATACGCG  58 89
        allD NONE
        allC NONE
        allE 3298092 .. 3298111 + -13.6  -5.71983   GCTATGTTGGATTTT            GCCACGGT GAGA ACCGTGGC             TTTTTTTATGCTTAA 100 74
        allS NONE
        mnmH 3312297 .. 3312322 +  -6.1  -3.35197   TAGCTTACTTTTATT         GCCGGCT-GACG CTA CATTGAGCCGGC         TTAGTGTCTGTCGCG  59 38
        tesA NONE
CCO40_RS16070 NONE
        cnoX 3322319 .. 3322339 +  -3.9  -3.39521   GCCCGGCGGAGGCCA            TTTTCGGCG TTG CGCCCAAAC            TTAACTTTTCCTGGA  49 389
CCO40_RS16090 NONE
CCO40_RS16095 3325374 .. 3325386 +  -5.5  -5.40474   AACCGAATGGCTTTG                CTGGT TAA ACCGG                TTTTTTTCGCCACAT  95 402
        copA 3328032 .. 3328061 + -18.1  -3.62597   AAAGCGTAAAAACGC       TATATCAGGCAGC ATCA GCTGCCTGATATA        TTATTAAGCCATCAG 100 32
CCO40_RS16110 3329033 .. 3329047 + -12.8  -4.36914   GTTGACGTCCCGTCA               GGGCGC ATT GCGCCC               TTTTCTCCAACGCGC 100 52
CCO40_RS16115 3329944 .. 3329963 +  -3.4  -3.11291   CATCGTTATTATTAT            CCCGACGC TTTC GCTTCGGA             TCTTCAGATTGTCGC  45 83
        ybaK 3330964 .. 3330974 +  -8.2  -3.89956   AACTGTGGATAGGCG                 CCGG AGT CCGG                 TTTCATCTGTGCTAC  71 422
CCO40_RS16130 NONE
CCO40_RS16135 3336042 .. 3336063 +  -4.3   -4.4518   AATTCAGCAATAGCT           CCCGGTAGC AGCG GATGCTGGG            TTTTACGTTTTGCTT  68 447
         aes 3338126 .. 3338171 +  -2.5  -5.00616   TGAGTTTCAGCATCA TATCAATATGTTCCGGCGTCG CGTT CAGCGCCGGAATGTACGCATA TTTTTTACCGCCCGC  74 54
        priC 3346839 .. 3346851 +  -3.3  -3.12351   TAGAAAACGTACTGG                CGCGT TTA ACCCG                TTAACTCTGGAGAAA  45 9
        rsmS NONE
CCO40_RS16200 3348372 .. 3348385 +  -3.1  -3.79633   GGATGCTCCATCGCC               G-CCTG TAG CAGGAC               TCTTTTCACTTTCTC  54 356
        acrA 3353532 .. 3353546 +  -2.8  -3.14878   GCAAGCGGTGATCAA               CCTG CTCAGCC CAGG               TCTTAACTTAAACAG  45 5
        acrB 3356743 .. 3356758 + -11.8  -5.00616   GCTCACTGTTGATAA              GGCCGC GCAA GCGGCC               TTTTTTACGCAAAAA 100 44
        tomB 3357608 .. 3357624 +  -2.3  -2.79133   AAAAATTATTACAAT              CATAGGT AGA ATTTATG              TCTGATAAACCATTA  40 39
         hha 3357952 .. 3357963 +  -5.8  -2.91869   CACATAGCAATAGCA                GGGA ACGT TCCC                 TCTAATACTTTATTA  51 137
         maa NONE
CCO40_RS16240 3359165 .. 3359188 +  -8.1  -2.94322   GCCGGTAATAAAAAA          GTGCGCACC CTCCCT GGTACGCAC           TGCTTTCCCTGAACT  61 33
CCO40_RS16255 3361614 .. 3361630 +  -2.9  -4.16842   GCAATTGCAACCCAT              CAGGCAT CGG ATGCTGG              TTTCTTGCGCATCCG  58 246
CCO40_RS16265 3362341 .. 3362354 +  -2.3  -4.56597   GGCGCCTGTTTACCT               TCGGT ACGT ACCGC                TTTTTGCGACAGCAC  65 353
        tesB 3363697 .. 3363711 +  -9.2  -3.17212   CACAATTAAAAAACA               TGCCGC TAT GCGGCG               TTAATGGCCTGATGA  70 32
        cdsH 3370886 .. 3370904 + -10.3  -3.14344   AGAAACCAAAAAAAA             GCCAGAC TGAAT GTCTGGC             TTGCTGGAAGAGATC  74 39
CCO40_RS16315 3373579 .. 3373590 +  -2.2  -3.15663   TACGCGTTACCATAT                TGGC TTTC GTCA                 TTGATCAGGATAACT  44 63
        queC 3374611 .. 3374628 +  -5.5  -3.15396   CAATAGATCGCTCAA             TACCGCC GGGC GACGGTA              ATTTATATTGATGTT  50 335
CCO40_RS16370 3385868 .. 3385883 + -11.8  -2.92091   ATAGCAACAACAAGA              CCCGGC AGAA GCCGGG               TCTGTAGATGCCTAT  80 40
        ampG 3387599 .. 3387611 +  -6.3  -3.35996   TGTTTTATTTTTACA                TTGGT TAT ACCAA                TTATCCCTCAACATC  59 252
        cyoA NONE
        cyoB NONE
CCO40_RS16390 NONE
CCO40_RS16395 NONE
        cyoE 3392640 .. 3392660 + -11.1  -5.68039   TTGCTATTGAAAAAA            CCGCCGTGT CAC AAACGGCGG            TTTTTTTATCCATTT 100 47
CCO40_RS16415 3398071 .. 3398081 +  -8.2  -3.29461   AACGAGACTCAACCT                 CGCG AAC CGCG                 TTATCCACGCCGTTA  62 491
        panE NONE
        yajL 3399846 .. 3399860 +  -7.1   -3.2614   TACGGGCGTTCGCCC               TGCGC CAGAC GCGCA               TTAATATGCGCAATC  62 138
        phnR 3402629 .. 3402639 +  -4.6  -3.30771   GGTGCGCCGGATGTT                 GGCT GCG GGCC                 TTATCCGGCCTGTCA  52 43
        phnS NONE
        phnT NONE
        phnU NONE
        phnV 3406984 .. 3407014 +  -6.2  -4.37711   ACCTTATCGAGAATA       CTGAAGTCGAAG TTTTCTT CTTCGGCTTCAA       TTTTCGCTTTAATGG  73 409
        xseB NONE
        ispA NONE
         dxs NONE
CCO40_RS16490 3412421 .. 3412463 +  -2.5  -3.68351   CGACATATTGTTCGG GGATAGGCCGGAT-AAGGCG TTTA CGCCGCCATCCGGCAAACCC TTTAAATAATACCGA  50 85
CCO40_RS16525 3417510 .. 3417520 +  -6.8  -4.21812   CGAAATATTTAGAAA                 CGCA AAT TGCG                 TTCTTTTCACTCCCG  72 272
CCO40_RS16530 3418438 .. 3418461 + -12.4  -2.72144   CTAAACCTGCAAAAA          AGGCCAGAGG TCGT CCTCTGGCCC           GTTTCGGGCGCATGC  82 37
        impX 3419043 .. 3419057 +  -2.8  -5.06961   GCACCAACAGCTTTG               TCAGCA GCC TGCTTA               TTTCTTTTTGTTCAT  73 261
        acpH NONE
CCO40_RS16585 3427905 .. 3427922 + -12.7  -5.28176   AGTGCATTGATAAAA             GGCTCGC GAAT GCGAGCC              TTTTTTATGCGTAAG 100 44
        sbcD NONE
        sbcC 3439859 .. 3439869 +  -4.6  -3.41359   TTCATAGCCGCAGCG                 CGCG ACA TGCG                 TCTTCATTTTCGGCA  52 166
        araJ 3441197 .. 3441208 +  -5.8  -3.29144   AACGATTTCATCAGC                GACG GAAC CGTC                 TTGTACAGGCGCTCA  54 159
        rdgC 3443352 .. 3443372 +  -3.3  -3.18274   CATTGCTTTGTAGCA            TAATCAGGC CCC GTCTCATTA            TTAAATTAACATCCA  45 347
        proC 3446709 .. 3446751 +  -2.8  -4.18676   TAAATCCTGAAGCCC GGCTGGACGTCATGCCGCCAC TTCG GTG-CGGT-T-ACGTCCGGCA TTCTTTGCTTTATAA  58 31
        ddlA 3452424 .. 3452451 + -12.8  -3.70674   CGATGTAATAGCGCA        CGCCCGAT-AGCG CAA CGTTTATCGGGCG        TCTTTTACCTCATCA  95 33
CCO40_RS16705 3453383 .. 3453401 +  -8.8  -4.13767   CCGGGCAACATTTCC             CGCGCAAG CGT CTTGCCCG             TTTTGGCCTCGGCCA  80 175
        ampH 3457107 .. 3457142 +  -3.9  -5.19251   TCCTGCATCCTGAGT    CGTCGCGCCTCGCGCT ATATC AG-ACGAGGCGCAACC    TTTTTGTTAATATTC  79 28
        hemB 3462301 .. 3462319 + -13.8   -3.5936   GTTAATTCTGTTACA             GGGCGGCG CGC TGCCGCCC             TTTCCCGACTTTACA 100 36
        prpR 3469972 .. 3469996 + -12.2  -4.91109   TGCCAGGAATAAATA         TACCCGCC-GG AAAC CCAGGCGGGTA          TTTTTATGATGCAAC 100 117
CCO40_RS16770 3471490 .. 3471505 + -10.4  -3.05816   CACATCGTAGCTTAG              CCAGGC GCTG GCCTGG               TTCCGTGGAGCATAA  69 360
        mdsA NONE
        mdsB NONE
        mdsC 3493547 .. 3493596 +  -9.7  -3.10344   AGAAAAAGCAAGGTT AGCCCAAATAGCGCCCGCGTCGC CAGT GCGGCGCGCGCGCTAAACAGGCA TATATTACCTGCAAA  71 24
CCO40_RS16895 3501574 .. 3501599 + -17.7  -4.18018   AAATAATTGTCGCTA         TGGTCTGGCGT TGAA ACGCCAGACCA          TTTTCAATCGCCAGG 100 35
        stbB NONE
CCO40_RS16905 NONE
        stbD NONE
        stbE 3507159 .. 3507177 +  -3.2  -3.63991   ATTATCTGATTCAAT             TAATGTGT AGA ACGTATTA             TTATTACGCATCATA  51 198
CCO40_RS16925 3508866 .. 3508884 +  -3.1  -3.09286   TCCACCAGATCCACT             TCACGAT CCGTT AGCGTGA             GTTTTACCGTAATAT  45 496
        phoE 3520891 .. 3520935 +  -7.2  -2.57463   ACCAGTTCTGATAAG TC-GC-ATTGTGCCTGATGGCG CTA CGCCATCAGGCATGGCAGCAGG GTTATGCCGACAGTT  57 30
        pepD 3525247 .. 3525283 +  -3.7  -4.66318   ACCTTCACGCTAATC   CCG-CTCACCAGGTGCG TGGCC CGCAC-TGCCGAGTCGG   TTTTATTAACGTGCT  69 379
        dpaA 3529073 .. 3529094 +  -8.7  -3.91798   AATAACGCCCATTCG           CCTGGCATA ATCT TTTGCCAGG            TTTCATTCCCCGTTA  73 36
        fadE 3533295 .. 3533312 + -14.1  -5.08088   TCTCGTGTCTTTCCT             GCCCCGC TTTC GCGGGGC              TTTTTCTTGCCGCTT 100 45
CCO40_RS17060 3534156 .. 3534176 + -11.8  -2.97676   TCACCTTGTAAGCAA            CCTGCCGC TCACC GCGGCGGG            ATTGTTTCACTCCGT  80 30
CCO40_RS17065 3534938 .. 3534961 + -11.8  -3.87815   TGAGTAAATATTTTT          GCCCGTTATT CCGG GATAACGGGC           TTTATCCAGGTCGGG  93 34
        pagN 3536210 .. 3536256 +  -8.7  -2.55544   TCATGTTTTGTATTG GGCATCGTCAAAAGACGACTGG CTGA CCAGTCG-CATATCTCGATGCC TCAATTCAGTCATCA  63 256
CCO40_RS17120 3545366 .. 3545405 + -19.6  -2.60194   ACTAAAGTTAAATAA  TAAAAAGCCGGGAAGATA TTAA TATCTTCCCGGCTTTTGA   ATTAATTGGAGAAAT 100 49
CCO40_RS17140 3546820 .. 3546847 +  -7.8  -5.28942   TTAAATAACAAAAGA        GCCGGG-AAGA TTTAATT TCTTACCCGGC        TTTTTATTTAAACTA  91 37
CCO40_RS17155 3549165 .. 3549194 + -11.6  -5.24796   GGTATAAAAATAAAA       GCCGGG-AATATC ACGGA GATATTTCCCGGC       TTTTTATTATATAAA 100 34
        tagK NONE
CCO40_RS17285 NONE
        tssE NONE
        tssF NONE
        tssG NONE
CCO40_RS17305 3583663 .. 3583687 +  -8.6  -5.95166   GAAGACGAAAAAAAA          CCGTATCCCT TTTAC AGTGATACGG          TTTTTTTTACTTCAC 100 275
        rnhA 3585197 .. 3585214 +  -7.7   -2.7976   ATAGTGGCTACCAGG             CGGA-GGC TTA GCCATCCG             GTTTGCGATATTGCC  60 15
        gloB 3586746 .. 3586758 +  -3.3  -2.93623   CATTCGCTAACTTCG                CCGTT ATG ATCGG                TCGTCTTTTAAGCAA  44 55
        mltD 3588180 .. 3588200 + -11.1  -4.31085   ACGAAAAAGCCAAAA            GGCGCCG CTTCCCC CGGCGCC            TTTTAAATTGCTATA  90 50
        yafC 3592396 .. 3592410 +  -5.6  -3.81488   CATGCCAGAATAACC               TGCGCC GGG GTCGCA               TTATGTTTAACCGCA  61 236
        metN NONE
CCO40_RS17405 NONE
        metQ 3602515 .. 3602532 + -12.7  -3.64915   TGTAATATTATTCAG             GACGGGC TATT GCCCGTC              TTGTCATTTATGCAA  95 63
        rcsF 3602980 .. 3603004 +  -2.1  -2.90349   TGTATCGGGTCCGCC          CTGAATATTTC GGC GAAATGAGCAG          CTTTCAGTTTGAACA  41 5
        tsaA 3603767 .. 3603785 + -13.2  -3.13343   TCACTTTTTTTGTAT             CAGGCTCA CAT TGAGCCTG             TTCGATCGTTCAACT  91 88
        proS 3605581 .. 3605601 + -16.9  -4.72497   CGGCAGATATGTAAA            GGCCTCGCA CCC TGCGAGGCC            TTTTATTAGTGAGTG 100 73
CCO40_RS17445 NONE
         rof 3608153 .. 3608184 +  -3.7  -5.04868   CGGCGTGGTATCTCG     TC-GCCAGG-GCGGG ATCC CCTGCTCCTGCCAGA      TTTTCTTTAATTTAC  77 229
         map 3635148 .. 3635178 + -16.3   -4.7497   AGAGTAAATACGTAG      GCCGGATAA-GGCG TTCA CGCCATTATCCGGC       TTTTTAATGGGTGGC 100 213
        glnD NONE
        dapD 3638738 .. 3638753 + -11.8  -2.85354   AAGCGAGTGAAAAGC              GGGGGC GGCA GCCCCC               CTTTGCATTACGGTG  80 39
CCO40_RS17580 3640680 .. 3640697 +  -5.6  -3.09452   AGCCGATCTGGACAA             GCTTAC CCGTAA GTAAGC              TGTGTGTTGCCGGAT  52 10
        mtnN NONE
        btuF NONE
CCO40_RS17610 3647643 .. 3647657 +  -5.6  -4.68994   CATCGGGTCAACCAC               CAGGCC AAC GCCCTG               TTTTTCGATGGTCAT  76 264
        hemL 3650828 .. 3650855 +  -9.9  -5.96521   CCAGAAACAACGTAG       GCCGGGTAAGGCG AAGC CGCC--ACCCGGC        TTTTTTTTGGTTCAT 100 51
        thpR NONE
        sfsA 3671022 .. 3671033 +  -5.8  -4.25283   GTATTCTGGCCGCGT                GCGT AAAT ACGC                 TTTTCCTCACAGGGT  67 64
        dksA 3671645 .. 3671662 + -12.7  -4.21772   ACCCTATTTATGACA             GGCGGGA GTTT TCCCGCC              TTATTCTTTATTGCC 100 55
      gluQRS NONE
        pcnB NONE
        folK NONE
        panB 3675551 .. 3675563 +  -9.1  -3.30124   ACCGTGCCGGATGGC                GACGC GAC GCGTC                TTATCCGGCCTACCG  71 49
        panC NONE
        panD 3676996 .. 3677035 + -10.2  -5.47218   GATTTTCAATAATAG  GACAACCC-TTCCAGAAAA ACA TATTTTGGGACGGGTTGTC  TTTTTTTAAATCACC 100 39
CCO40_RS17740 3677892 .. 3677915 +   -11  -4.67641   AAAAAGATTAGCCAA          TCCCTCAGCG GCTG TGCTGGGGGA           TTTTAATTTTAAAGT  95 53
CCO40_RS17745 3678732 .. 3678750 + -14.6  -2.71745   TTACGTACCAATGTA             GTGGGCCA TTC TGGCCCAC             GTTAATTATTCGGAA  89 54
CCO40_RS17750 NONE
CCO40_RS17755 3681955 .. 3681972 +    -2  -2.78216   TCAGCCGTTGCGACT             TTCGTA TTTAGC TACGAG              TAATTAATGCAGATC  40 5
CCO40_RS17760 3682572 .. 3682586 +  -2.9  -3.60072   TAATTTTCAGGTGCT               TTGTT TATGC AACAA               TTACTGTTTCTTTTA  50 38
CCO40_RS17765 NONE
CCO40_RS17770 3684378 .. 3684396 +  -4.4  -3.79533   TCTCACCGTGGTGAC             CGCCAGAT GGA AACCGGCG             TCTTTTGCTGCTTTG  58 153
CCO40_RS17785 3686899 .. 3686918 +  -9.2  -4.68209   TATAACTGATCCTGG            TGGCCAGC GTCG GCTGGCCC             TTTGTTTATTGAGGT  90 32
        stiB NONE
CCO40_RS17795 NONE
CCO40_RS17800 3691278 .. 3691291 +  -3.8  -3.27525   CTGGAGATTCAGATT               CGCT GAGAGA AGCG                TTGGGTTTCAGCAAG  48 20
         can 3693884 .. 3693916 +  -8.4  -2.95459   AGCCATTAGCTATAG     GCCGGAT-AAGTCGC TTTA GCGACGCCATCCGGC      ATTTCTGCGCTTACT  65 40
CCO40_RS17825 3697067 .. 3697086 +   -15  -3.30124   CGAAATAACCATTAA            TGCCCGGC GTAT GCCGGGCA             TTGTGCCGGGTGGCG 100 33
CCO40_RS17835 3699324 .. 3699343 + -12.2  -3.71487   CTATTGCTGAAATAA            TGACCGTG CATC CACGGTCA             TTGTTAGCTATGATG  89 53
        speE NONE
        speD 3701055 .. 3701075 +  -6.1  -2.71731   CGCGAGATTTACTAC            GGCCGCA ATATTTC TGCGGTC            TGATTCACCACTGGC  53 2
CCO40_RS17875 3706458 .. 3706470 +  -2.6  -5.02074   GCATTACCAGCCCGG                CGTC CCTCT GGCG                TTTTTTCAGAAATCA  70 212
CCO40_RS17880 3707157 .. 3707178 + -18.7  -3.09273   ATAAGAAGCGCCATT           CGGGCCCGG AAAT CCGGGCCCG            TCTCTGTTACACCGC 100 37
CCO40_RS17890 NONE
CCO40_RS17895 3712733 .. 3712756 + -10.3  -2.67694   TGCCGGAATTGGCCG          CCCATACGC CTTCAT GCGTGTGGG           TGATCTGCTGATGCT  66 161
        aroP 3722419 .. 3722442 +   -16  -3.51924   GTGACGTTACTTTTC          CGCCCTCCCC GTCC GGGGAGGGTG           TTATCTGCCTCACAG 100 43
CCO40_RS17930 NONE
CCO40_RS17935 3725090 .. 3725104 +  -3.4  -4.17701   TCTTCGCCATTGATA               CCGCCG CTT TGGGGG               TTTCTACTTTGTCAG  58 194
        nadC 3727418 .. 3727440 +   -17  -2.91582   TGCTGATCCTCTCCG           CCCGATGGCG CTG CGCCGTCGGG           TCTATAAATCACCTG 100 35
        ppdD NONE
        gspE NONE
        hofC 3730697 .. 3730711 +  -3.6  -3.71848   ATATTAGAGGCTATT               GAAAAT GCG GTTTTC               TTGTTCCTGCACCCG  53 68
        coaE NONE
        zapD NONE
        yacG 3733663 .. 3733692 +  -4.9  -3.35996   AAACGTAGCCGCCAC       TGCGCCAGGGT GGATGAAA ACCTCGGCGCG        TTATCACTGACCCTA  54 170
        leuL 3761979 .. 3761996 + -14.1  -5.64274   CGAAGTCAAACAAAA             CCCGCGC CGTT GCGCGGG              TTTTTTTATGCCTGA 100 48
        leuA 3763600 .. 3763612 +  -3.3  -2.62263   AAATAAAGAGAACAA                CAAGG AAA CCGTG                TAATGTCGAAGAACT  42 10
        leuB NONE
        leuC NONE
        leuD 3766840 .. 3766858 +  -8.8  -5.28826   CTCATCAGTCGCTCA             TGCCGGGG ATA TTCCGGCA             TTTTTTATACGATTT  95 140
        sgrR 3769060 .. 3769084 +  -7.2  -3.62518   ATAATGCCGGCGAAG          GGATTTGAGG CTACC TCTCAAGTCC          TTTGCCACTCTTTAA  67 151
        thiB NONE
        thiP NONE
        thiQ 3772854 .. 3772870 +  -6.5    -3.273   GGATCGTGAACATAC              TGTGCTG ATG CAGCGCG              TGTTCGGTTTTATCC  56 507
        araB 3776198 .. 3776208 +  -2.4  -3.48529   GACTCATTAAGGACA                 CGAC AAT GACG                 ATTTTTGATAATTAT  47 31
        araA 3777715 .. 3777752 +  -5.5  -2.62263   CGCTAAAAGTGGAGT   CTGAATGCCCGGTGGCAC TGC GT-TTACCGGGCCTACGG   TCCTGTAGGCCGAAT  50 35
        araD 3778554 .. 3778573 + -12.8  -3.20858   TAATGCCTCTAAAAA            CGCGTCCC ATGG GGGGCGCG             TTGATGAATCTGGTC  86 38
CCO40_RS18190 NONE
        polB 3782562 .. 3782591 +  -3.5  -2.66435   CCTGGACCTAATTAA       CGCCACTACCA CATTAGCC TGGTAGCGGGG        TCGTATACTCGCAAT  42 88
        rapA NONE
        rluA 3786558 .. 3786596 +  -8.7  -3.21099   GGCATCTTCCAGCGT  CGGGCCGCGCTGCGCCTG CTGC CAGCCGCCGC-CGGACTG   TTGATGATAACCGCC  65 333
        lptD 3789794 .. 3789804 +  -8.2  -3.35813   GATTTACAACGTAAT                 CCGC ATT GCGG                 TTAATTGAAATGGAA  65 48
        surA NONE
        pdxA NONE
        rsmA NONE
        apaG NONE
        apaH 3794181 .. 3794236 +  -3.3  -3.53811   TGCCTGATGGCGCTA CG-CTTATCAGGCCTACATCCG-GCTA CATC TGGCTCAAGAGTAGGCCGGATAAGGCG TTTCGCCGCCATCCG  50 49
        srfN 3801339 .. 3801350 +  -3.6  -4.11371   AAATGCTATCACCAT                GGGT CCCT GCCC                 TTTTACCCCCTCTTG  60 408
        caiT NONE
        caiA 3810237 .. 3810270 +  -7.3   -2.8294   TGATAAGACGCGGGG     CGTCGCCATCAGGCA ATCA TACCGGATGGCGCTG      TGCTTATCCGGCCTA  58 58
        caiB 3811530 .. 3811576 +  -9.5   -3.6682   GGCCAAAGTTGAGGA TTAAACGCGATGCGCTAATCGG TTTT CCGATTAGCGC-TCACGCCTGA TTTCAGTGGATAAAG  77 22
        caiC 3813151 .. 3813181 +  -3.1  -2.76418   AAAATCTGAAATAAA       CCTTCCGGCAGGA ATCCC TCCCGCCGGGAAA       CTATTTATCTGGAGA  43 27
        caiD 3814014 .. 3814056 + -13.6  -2.60496   CCGGATGGCGCTTCG CTTATCCGGCCTACAG CACATGCGCAA CCGTAGGCCGGATAAG GTGTTTACGCCGCCA  86 51
        caiE 3814911 .. 3814932 +  -5.1  -3.53224   TCAATCGGCGATAGA           GTTGAGAGT CGAT ACTCACGAC            TTTCACCAGACGCTG  55 242
        citS 3828489 .. 3828499 +  -2.4  -3.24232   TGATGGTGTAAAAAA                 ACGC ACG GCGG                 TGTCTTTGCCGCAAA  44 30
CCO40_RS18390 NONE
        oadA NONE
CCO40_RS18400 3831996 .. 3832018 + -12.1  -4.27192   CGATGTAATAGTGGA           TGGGATACG CATGT CGTATCCCA           TTTTCATCCAAATTT  95 33
CCO40_RS18405 NONE
CCO40_RS18410 3834571 .. 3834581 +  -5.4   -3.0464   TATCCACCACCGTGG                 TACC GGC GGTA                 TATTGCCCCTGCGTT  50 166
        rpsT 3843288 .. 3843302 +  -8.5  -5.64274   AGCTTTGTAGAAAAA               CCCGC GTAAA GCGGG               TTTTTTTATGCCTGC 100 57
CCO40_RS18460 3845116 .. 3845129 +  -3.8  -2.91276   CCCTCGAATATGGGA               GGCA CTACCA TGCC                ATTTATGCAACAAGA  46 56
CCO40_RS18465 3847169 .. 3847201 + -15.6  -3.06492   TGAACTTGTAGAATG      ATTCCGGCTGCGGG CTAGT TCCGCAGCCGGAAG      TATTACGGTAGGTAC  93 30
CCO40_RS18520 3857359 .. 3857373 +  -4.2  -3.49738   CGGTTCAGTCATAGA               CAATGC GTA GCACTG               TTAATTGCTTATCTT  52 136
CCO40_RS18585 NONE
CCO40_RS18590 NONE
CCO40_RS18615 3878944 .. 3878958 +  -2.8  -3.70022   GACTTAAAGTCATTG               GCGA CGATTAA TCGC               TGTTATTTCTATTCC  50 15
        msyB 3879715 .. 3879738 +  -8.2  -3.69395   GTGAATGCCCTCACT          GGGGGAAA TATTTTCT TTTCCCCC           TTATTAGATCATAGA  69 37
        satP 3880424 .. 3880456 +  -7.7  -2.66291   AGGCGCACTAAATCT      CTTTTATTCCTCCCG CAC CGGGAGGAATAACCC      TACTATCAGTATCTC  59 30
CCO40_RS18640 3883866 .. 3883888 +  -4.2  -3.05463   TCAACTCTGCGGCAT           TTTTTTGCTA AAG TCGCAGAAAA           TTCCCTGCAAGGACT  47 62
        yaaA 3884735 .. 3884774 +  -9.3   -3.1505   CAAATCGGCGCCACC CCATAG-GCCCGGTAAGCG ACAG CGCC-ACCGGGCACAATGG  TTACTGGCGGGTCAT  70 79
        arcA 3891885 .. 3891911 + -13.1  -4.30719   GCCAAACCGTAAAAA         CAGCCGGTAAG TTATT CTTACTGGCTG         TTTCTTATGCCCCCC 100 53
CCO40_RS18685 3892465 .. 3892510 +  -8.9  -4.70046   TCCCGCCGGGAGGAG TTCCGGCAGGCGGCGATTTCGC TCA GT-AAAACGCCGCCCGCCTGCA TTTTGTACTTTTCTC  90 52
CCO40_RS18690 3893764 .. 3893780 +  -5.3  -4.56358   GAAGCGCATACAGAG              TAAAATA TAA TATTTTA              TTTTATATGGCTATC  71 295
        sthA NONE
        sthA 3895108 .. 3895124 +  -5.8  -2.59742   TATGGGATGAGTTTA              GAGCCG CATTC CGGTTC              ATTCTAGCCATTAAC  50 2
CCO40_RS18705 3897697 .. 3897713 +  -2.1  -2.64747   GGCGTAGAAATCTTA              CACGAGC AAT GCCAGTG              ATTCTGGTGGGATAA  39 8
CCO40_RS18710 3898305 .. 3898321 +  -2.2  -2.65504   CATCTTTCTATTTCA              CCTGGT ATAAA AGCAGG              AATTTTTCATGAGAA  39 41
        sthE 3899430 .. 3899466 +  -8.6  -3.41807   ACGGCATCACATTTT   CTGGCGCTGCGCGGGAA AACG TTAACGCGC-GCGCCCG    TTAGATTTATTTCCA  69 40
        robA 3904994 .. 3905024 +    -6  -4.37886   AGGTGATATCACACC       CGCACGCCTGGG CGATAAT CTCCGCCGTGCG       TTTTGTGCGGCCTAA  73 459
        yjjX 3905822 .. 3905849 +    -9  -3.30124   CATCAGGCATTTCGC        GGCGATGTTGCC GGAT GGCCGCTTCGCC         TTATCCGGCCTACGA  71 79
        ettA 3910144 .. 3910176 +   -12  -2.74443   GTTGTGAAACTGTAG      GCCTGATAAGACGC GGTAA GCGTCGCATCAGGC      ATTGGTTCTTATCCC  79 102
CCO40_RS18785 NONE
        lplA 3915819 .. 3915852 + -12.7  -3.57144   TGTGCGCTAAATGAA     TAATATCAGAGAGAC GAAT GTGTCTCTGATATTA      TTTAAACATAACAAC  95 31
CCO40_RS18795 NONE
CCO40_RS18800 NONE
        stjC NONE
CCO40_RS18810 NONE
CCO40_RS18815 3921331 .. 3921362 + -10.1  -2.58491   GCTGACGAAATAAAC      GATGAAGGGGGCC TGCTCT GGCCCCCTTCACA       ATCTTACTCTTTATC  70 28
CCO40_RS18840 NONE
CCO40_RS18845 3928796 .. 3928812 +  -7.9  -3.54424   GCACCACACCGGTTC              GCGGCAG TTC CTGGCGC              TTTAAGCGCATCGCC  62 381
        rsmC 3936135 .. 3936147 +  -9.1  -3.30243   CATGTGCCGGATGGC                GACGC AAA GCGTC                TTATCCAACCTACGT  71 72
CCO40_RS18895 3936667 .. 3936678 +    -3  -3.92414   GATAATGATAACCAA                TATC ATAT GATA                 TATTTTCTCATTTGT  54 327
CCO40_RS18905 3938024 .. 3938034 +    -4  -2.76885   TATCGCTATCGATAG                 GATT AGC AATC                 ATTATCATTTAGATT  45 101
        fhuF 3938847 .. 3938868 +  -2.4  -3.21705   AGTGCGGCGACTGCA           CGCTAAAGT AAACC ACTTTA-CG           TTGCCTTCAGTTATC  44 15
CCO40_RS18915 3939961 .. 3939987 +  -6.4  -3.28745   ATTTATCGCCAGTTC         CGTCAGGCTGGA TAA TCCTGTCCGGCG         TTCAGTTCTTAACGC  59 520
CCO40_RS18930 NONE
CCO40_RS18935 3942833 .. 3942846 +  -3.7  -2.85545   CCCCCGCGTGTGATT               GGTGG AACG CCTCC                TGCTGTTCTTACAGG  46 28
        dnaT NONE
        dnaC NONE
CCO40_RS18950 3944928 .. 3944942 +  -4.2  -3.20751   GTTATTAGAATTGCA               GCAATG TGA CATCGC               TATTACATTGTTAGA  48 232
        opgB 3947373 .. 3947405 +  -7.8  -2.94099   CCATAAACTGGCGCA     CAG-GCCTGATAAGCG AAG CGCC-ATCAGGCACTG     TATATGCTACACGCC  61 103
        btsT 3959471 .. 3959499 +  -7.5   -4.3255   CCCCGGCTAGTGTAG       GCCGGATAAGGCG CAAGC CGCC--ATCCGGC       TTTATTCATTAACAG  77 67
CCO40_RS19005 3959703 .. 3959723 +  -3.2  -3.14344   TTACGGCGGCGATGG            CAAAGGCG GTATG CGCTGTTG            TTAATGGAGAGACTA  46 1
        yjiA 3961033 .. 3961050 +  -5.5  -4.33258   ATGCTGAGCACTCAG             CGCGG ATGCGTTG CCGCG              TTTATGTTTAACCAT  69 364
        hsdR 3966255 .. 3966271 +  -9.4   -2.5955   GTATCATCCCCGTTT              TCGCCG GATGG CGGCGA              TGCCTTATCCGGCCT  68 45
        hsdM NONE
CCO40_RS19040 3969402 .. 3969420 + -11.7  -5.38549   GACCTTTATTTTCAA             GCGCACC TTCCC GGTGCGC             TTTTTATTATTTCCC 100 39
        symE 3969961 .. 3969983 +   -12  -4.04295   AAACGCATAAAATAA           GCTGGCAAAG AAC CCTTGCCAGC           TTTAATTATAATTCA  93 39
CCO40_RS19050 NONE
CCO40_RS19060 3971390 .. 3971418 +  -3.8  -3.35046   GGCCGTAGTGGGAAT        CGTTGGCGAG TTTTACCGC CTCGTCATCG        TCTTTCACCACATAC  49 344
        mdtM 3974951 .. 3974984 +  -8.9  -2.73364   CCGCTGAGAAGTAAA     TACTCTGCCGGATAG AGGC TTATCCGGCACAGGA      TAATCTGATGTTTTT  66 27
CCO40_RS19080 3976492 .. 3976503 +  -5.8  -3.51232   TTACAACAACAATCC                GGCA TTCT TGCC                 TTACTTTAGCAAAGA  57 210
CCO40_RS19085 3977934 .. 3977966 + -10.6  -3.14344   CGGCTACGGATTACC     CGGCCCATCCATGGGC CTC GCCC-TG-ACGGGCCG     TTGCTCACCCCAGTC  78 248
CCO40_RS19090 NONE
CCO40_RS19095 NONE
        iadA 3980917 .. 3980931 +  -2.8  -3.28712   CCGCTAGTTTCAGGC               TGCC CCATCAC GGCA               TTCTGAAAGAGGACG  46 44
        hypT 3982135 .. 3982163 +  -8.2  -4.37658   AATAAGGCTATCGAT       TTGCGGCAGC-AGC AGC GCTTGC-GCCGCAG       TTTTATCGCCACGTT  81 235
        trpS 3985283 .. 3985304 +  -4.3   -3.7642   CAGGTGCTGCCACAT           CGCCAGC TTCGCTGC GCGGGCG            TCTTTCTTAATTAAC  55 143
CCO40_RS19130 3987158 .. 3987168 +  -8.2  -3.66178   TGCGCCAGCATGAGA                 GGCG TTC CGCC                 TTTAGGATTGCCAAA  68 229
CCO40_RS19155 NONE
CCO40_RS19160 3993070 .. 3993099 + -14.5  -2.76315   CGATAACGTGAAGCA       GGAGGTATACC-CT ACA AGAGGTATACCTCC       ATTTAAAAGTATTCA  87 35
CCO40_RS19165 3994344 .. 3994378 + -13.9  -3.89501   ACCTCTAATTATAAA     TTAAACAAATCTGTC TCTAT GGCAGATTTGTTTAA     TTTATAAAGCTGTTA 100 33
CCO40_RS19180 3997168 .. 3997184 +  -6.6  -2.52896   TATCACCACTATCCT              GACCTA AATTA TAGGTC              TCGATTCCAGCATCA  51 436
CCO40_RS19210 4015487 .. 4015498 +    -3  -3.69283   CAAAAAAAGCCACCC                TTAG GTAG CTAA                 TTATTGCATCACTTG  50 503
CCO40_RS19225 4016995 .. 4017005 +  -5.4  -3.54129   CGGTCGCTCCAGCGC                 GTCA AAC TGAC                 TTTGCAGCAGGTCTG  55 182
        idnD NONE
        idnO 4019449 .. 4019466 + -12.7   -3.6581   CCAGGGAAATACGAC             GCAGCGC GTAA GCGCTGC              TATTTTGGCGCTAAT  95 41
        idnT 4020799 .. 4020810 +  -2.2  -3.41693   CGTACTGGCGCTGAA                TGCG GTTC TGCA                 TTAATTCATCATCCG  45 10
CCO40_RS19250 4022036 .. 4022071 +  -2.5  -2.59267   GGCCTACGGGTCCGG    AGTAGGCCTGAAAAGC ACAGC GCCAT-CAGGCCTACG    ATTACTGTGATTACG  40 185
        pepA 4026208 .. 4026244 + -11.6  -3.30124   TGATAAGGCGCATTA   GCGC--CGCCATCAGGCG TTT TGCCGGATGGCGCTGCGC   TTATCCGGCCTACGG  83 63
        holC NONE
CCO40_RS19280 4029719 .. 4029738 +   -15  -4.66609   ACAACATGAATTATG            GGCCGACG TAAA CGTCGGCC             TTTTTACATCAGATA 100 139
CCO40_RS19290 4031679 .. 4031719 +  -8.6  -3.61894   TTATTTTTGCTGATA TAAGTAAT-CCCGGA-AACA TCC TGTTATCCGGGAATCACTTA TTATTCAAGGAAGTT  72 72
CCO40_RS19295 4032319 .. 4032336 + -12.7  -3.72576   GAGTGAGTTCTTTTT             GCCTGCC GCAG GGCAGGC              TTTACTCAGGACAGA 100 117
CCO40_RS22555 NONE
        argF 4035048 .. 4035066 +  -5.2  -4.46212   AACACCACAAAGTCG             CCTTCGTT CAG GACGACGG             TTTTCTCGTCGACGC  70 202
        arcA NONE
        arcC 4038251 .. 4038263 + -10.5  -3.63515   GGCTTTTTACCGGAT                GGCGG CTT CCGCC                TTATTCGGCCTACAG  78 41
        argF 4039358 .. 4039386 + -13.2  -2.62184   GGCGACTAATCCCAC        AGGATATGCGCC CTTGC GGCGCATATCCG        TGATATCAGGAGAGA  84 32
CCO40_RS19335 4040821 .. 4040831 +  -4.6  -3.28791   TGTAACGAGCCAGAT                 GGCG ACG CGTC                 TTATCCGACAGGACT  52 36
CCO40_RS19340 NONE
        pyrL 4041664 .. 4041681 + -12.7  -5.75342   GAAAACCAATACCAA             GCCCCTC AATT GAGGGGC              TTTTTTTTGCCCAGG 100 13
        pyrB NONE
        pyrI 4043114 .. 4043131 +  -3.4  -3.32844   ATTATGTGGTGCTGG             CCAACT AATTTG GGTTGG              TTATGAGATCCCGGC  48 18
        ridA 4043573 .. 4043593 +  -8.9  -2.57132   ATTGAAGCGATCGCT            GTTCGTCGC TAA GCGCCGGAC            GTTATCCCCGCCGGG  66 14
CCO40_RS19370 4044416 .. 4044426 +  -2.4  -3.64703   CGCCATCAGCGGCCA                 GGCG GCG CGAC                 TTTGAATAAACGGCA  50 336
        treR 4048312 .. 4048325 +  -2.3  -4.56775   ATCGTCGCTGCGTTT               CGGGA ACGT TCCCA                TTTTTAAACCAACGT  61 77
        treB 4049822 .. 4049834 +  -3.3  -3.05384   AATTGTCTAATACTT                CTTCG GGG CGCAG                TTGCGTCCCAACGCA  45 31
        treC 4051542 .. 4051572 +  -3.9  -3.30006   CCTTATACGGATAAA       CGCCACAAACC TATTGACAC GGGCTGTGGCG       TTGCTCTAGGTTACT  50 49
        nrdD 4054099 .. 4054110 +  -5.8  -3.30124   TAAATGCCGGATGGC                GGTG TAAA CACC                 TTATCCGGCCTACAA  56 59
        nrdG 4055106 .. 4055124 +  -7.4   -4.1899   ATCAGTGCATCTTCA             CTGTCGCT AAG AGTGACGG             TTTTCACTGGCATGC  74 385
CCO40_RS19475 4065620 .. 4065638 +  -5.9  -3.53811   CGTCCGAGTAGCTCC             CGCTCGA TCCGC TCGCGCG             TTTCCACCGCCTGAA  57 100
        iolC 4074325 .. 4074353 + -16.7  -3.02043   ATGCCTGCCTCATCA        CGCCCCGTGTCTG CAT CGGACAAGGGGCG        TGTTCAAGGACGATT 100 40
CCO40_RS19510 4075946 .. 4075961 +  -6.1   -4.1552   CCGATCGGCTCAAAG              GCCAG CCGCAT CTGGC               TTTCTTCCGCCACTG  67 434
CCO40_RS19540 NONE
        iolA 4082773 .. 4082783 +  -6.8   -3.2048   TCGGAGTTCAGTATG                 CCGA CTC TCGG                 TTAATACGCTTTCAG  59 11
        iolB 4083643 .. 4083665 + -12.7  -5.46657   GTTGAGTGGTACTTT           GCCAGCCGT CCTCT GCGGCTGGC           TTTTTTATTCAACTC 100 47
CCO40_RS19560 4085806 .. 4085844 +    -2  -3.18378   CCGACATAAGATGAA   TTTATCTATTTGTT CACTAAATTCA AACAGATAGATGAA   GTTTATTCTGGAGAT  44 190
       iolT1 4087312 .. 4087347 + -12.8  -5.53991   GATTAAGTTTCACCA    CAATGCCGATGATCG CTAAATA CGATCATCGGC-TTG    TTTTTTTACTCCGTC 100 35
         fbp 4091260 .. 4091295 + -13.3  -3.23274   CGGAATAACGCATGA    AGCCGCCATTGGGCA ATAACA TGTCCGATGGCGGCG     TTGCCTTATCAGGCC  91 55
         ppa 4092017 .. 4092038 + -10.9  -5.11063   AAGCGTCAAGATAAA           GGCTCTCAT AGTA ATGAGGGCC            TTTTTATTGGCTAAT 100 55
CCO40_RS19590 NONE
CCO40_RS19595 4094794 .. 4094811 + -12.7  -3.14878   AATGTAAAAAAACAA             CGCCACC CGAG GGTGGCG              TGTTCAGTTCAGGGC  86 54
        msrA 4101617 .. 4101638 +  -5.1  -4.41895   CTAGCCCTGAACTTA           TCGGCTC ACTGCTAC GAGCCGG            TTTTCATTAAACGTT  68 115
CCO40_RS19620 4103077 .. 4103097 + -16.9  -6.31682   TGCCAGAAACATCAA            CGGCTCCTG ATT CAGGAGCCG            TTTTTTTTTACTTTT 100 49
CCO40_RS19630 4104392 .. 4104409 +  -5.5  -3.53012   AAGCTGCGCCTGGCC             TTCCGCC ACAA GGCAGAA              TTTCAGCGAGGAACC  55 189
CCO40_RS19640 4107183 .. 4107236 + -19.3  -2.78816   AACGTGAGTCCCGCA TGGC-GCT-GCG-TTTATTCGGCCTG ACTGG CAGGCCGAATAAAGCGCTAGCCGCCA TCTGATAAACGCTCC 100 39
CCO40_RS19650 NONE
CCO40_RS19655 4109573 .. 4109592 +  -7.8  -2.98493   CGGAAAAAGCGACCG            TCGTTCCG GTCA CGGAACGC             TAATTTCATACTCGC  62 3
        ytfE 4110859 .. 4110882 +  -4.6  -4.07568   TTTCGCCGGTACCGC          GCGTTTCGATA GCT TAGCG-AACGC          TTTTGGCGCCACGCC  62 524
CCO40_RS19675 4113693 .. 4113714 + -10.2  -3.61398   TACCCTATTCGTTCA           GGTGAAGC ATTACC GCTTCACC            TTATTCACCCACCAA  78 66
        yjfY 4116900 .. 4116919 + -13.6  -5.55698   AAAATGCCATAGTTT            TGCCCCCT GGTC AGGGGGCA             TTTTTTTCGCTTATC 100 48
        ulaG 4123419 .. 4123436 + -12.7  -5.22943   TGTGAGTCGATATCA             TGCCGGG ATTA CCCGGCA              TTTTTTCCATTTACT 100 36
        ulaR 4124384 .. 4124401 +  -3.3  -3.64703   TCGCCCCGGCGAGTG             CCTGCTG GAGC CGGAAGG              TTTCGATAGCAGGCA  51 141
        bsmA 4125536 .. 4125548 +  -2.7    -3.192   TCAATAACAGTAGAT                TGATT TTT AGTCA                GTTTTACATTGCTTT  45 34
        yjfN 4126254 .. 4126277 +  -3.1  -4.36914   CGCAAAAGCTTCACT          CAATACGTC ATAGAC GCCGTGTTG           TTTTGTCAGCACCCG  62 346
        queG 4149655 .. 4149669 +  -8.6  -3.76413   TGCGATTGGTGGTCT               GTGCTT AAC AAGCAC               TTTCAAATTTTGGAG  75 502
CCO40_RS19895 4151021 .. 4151055 + -11.5  -3.06261   CAGTGGCGGGAGATC    TGCCGGAT-GAGACGC TGTG GCGTTGCCATCCGGCA     TGTTACGCCTTACAG  79 43
        rsgA NONE
         asd NONE
        mscM 4157205 .. 4157217 +  -9.1  -3.30124   AGAAATGCCGGATGC                GACCC GTC GGGTC                TTATCCGGCCTACGG  71 56
        frdA NONE
        frdB NONE
        frdC NONE
        frdD 4164028 .. 4164056 + -11.8  -5.83211   TCTAAGTTGCCACGA        CGCCCTCTTATC TACCC GATAAGAGGGCA        TTTTTTCTTTTCCTG 100 36
CCO40_RS19955 4164656 .. 4164678 +  -3.4  -3.14931   GGTAAAACAATCAGG           TTCGTAGC AATATCA GCGACGAA           TTAATGCGCACTGAG  46 19
CCO40_RS19965 4166279 .. 4166300 + -10.1  -4.59773   GCGCGAAAAATAGGA           TGGCGCAGC ATAC GCTGCACCA            TTTTTCCCGATAACG  91 464
        epmB 4168107 .. 4168125 +  -4.4  -2.76291   ATAAAGTCCGTTTTA             GGACTCGC TTA GCGTGTAC             TGCATTTTCGAATTA  47 177
CCO40_RS19990 4169573 .. 4169596 + -13.8  -4.00066   TGACTAAAAGAAAAA          CCCCCGGTCA TTTC TGCCCGGGGG           TTTCTCAATTCTGGG 100 504
        yjeH 4173556 .. 4173581 +  -2.5   -5.4833   ACTCTTAATCATTTC         T-GCCGCCGG GCTCTCA CCGGCCGCCA         TTTTTTGTTGCATCA  85 351
        aspA 4175565 .. 4175585 + -15.5   -5.4505   GGGTAGTACCAAAGA            GGCACGTCA CGA TGACGTGCC            TTTTTTCTTACAAGA 100 48
        dcuA 4176969 .. 4176991 + -14.8  -3.30635   TGTAAGTGTTTCACC           CGCGGGGCGT ATC ACGCCCCGCA           TTCTCCCGCCCTTTG 100 36
        cutA NONE
CCO40_RS20035 NONE
CCO40_RS20040 NONE
CCO40_RS20045 4179922 .. 4179938 + -13.7   -5.1417   CACTTATTCAGAAAA              CCCAGCC TAT GGCTGGG              TTTTTGCTTTTCTGA 100 39
CCO40_RS20060 4181469 .. 4181510 +  -3.9  -2.57132   TTAAAATTGTGTAAG TGCCTGTTTTTGATA-TG TTCACTC CAGTAACAGAGACAGGCA ATTATGGACGAAAAG  44 123
CCO40_RS20080 4185408 .. 4185433 +  -2.7  -4.98531   AGCTATATATTAGTT         TTCTTTTGAAA TATT TTTCAGAATAA          TTTTTGATTTACACG  70 226
CCO40_RS20085 NONE
        rtsB 4186613 .. 4186624 +    -3  -3.22832   TGAATGAGTTTTACA                TATC AGTC GATA                 TTACGTAATTTTTTC  45 6
CCO40_RS20105 4190386 .. 4190399 +  -2.4  -3.04263   TACAGGCCAATAGCA               TCAG GCCAAA CTGA                TCTTCCGGCTCGCGT  42 333
CCO40_RS20130 NONE
        dcuR 4197525 .. 4197539 + -11.4  -4.98531   TATTTTCTATTATTA               CAGCGC TCT GCGCTG               TTTTTAATTTCAAAA 100 181
CCO40_RS20140 4197992 .. 4198012 +  -5.4  -3.80841   GTTAATCGTCGCCAC            TGGCGCAT TGAAT ATTCGCCA            TTTCCTGATGCTCAT  61 65
        dcuB 4199443 .. 4199459 +  -9.3  -3.28712   GGATTCCTGTAATGG              CCGCGCG CGC CGCCCGG              TTATGCGCGGCGCGC  71 29
        fumA 4201226 .. 4201251 + -11.9  -3.30124   CGTTATCGGTTAATT         GCCGGATG-GCG CTA CGCTTATCCGGC         TTATCCGGCCTGCAC  85 70
        melR 4205472 .. 4205501 +  -6.5  -3.14344   ACTTTACACCCCCTA       TTTGACG-GGGTAA TAC TTGCCCACGTCACA       TTCATACGGCGGGTC  57 169
        adiA 4207908 .. 4207927 + -12.1  -5.60993   CTGTCATACCTTTTT            GCGCGGG CCCCAT CCCGCGC             TTTTTTTATACAAAA 100 105
CCO40_RS20175 NONE
        adiC 4210436 .. 4210450 +  -2.9  -4.61873   ACCAACATTAAGTTC               TTAAG GTTCA CTTAA               TTTTACTTTGTCACG  65 97
        eptA NONE
        pmrA NONE
        pmrB 4214204 .. 4214214 +  -8.2  -4.08064   ATGTCCGACGCCGCT                 GGCG TTG CGCC                 TTTTAGCGGACGATT  77 343
CCO40_RS20210 NONE
        yjdN NONE
        phnO 4217615 .. 4217626 +  -3.6  -2.94232   TGGATAAAGGTTAAA                CGGG CTGA CTCG                 CTTCTTTAACAAAAA  44 133
        lpxO 4218677 .. 4218710 + -14.6  -3.55219   AGCCTCCTCTGAAGC     CGGGCCGCGGTATGG AACTG CC-TGCCGCGGCCTG     TTCTATCCTGGCGTT 100 29
        fdhF 4221273 .. 4221292 + -13.6  -5.64274   GCATTTTCCCTATAA            CAGCCTCC GCCC GGAGGCTG             TTTTTTTATCCATAC 100 123
CCO40_RS20235 4222235 .. 4222252 +  -6.9   -5.0538   TTTGCCCAGCACGTC             GCGCTCG TAGG CCAGCGC              TTTTTTGCGGTCAAA  86 219
         acs 4232843 .. 4232856 +  -3.7   -2.8294   CCAAAACCGTGAAAT               GCCCG ATGG CGCGC                TGCTTATCGGGCCTA  45 41
CCO40_RS20285 NONE
        actP NONE
CCO40_RS20305 4237298 .. 4237312 +  -8.6  -3.01918   CGTGCAGCAGCTTTT               GCAATG TTT CATTGC               TGATTTCTCGCGTGG  60 176
        soxS 4242570 .. 4242597 + -11.2  -4.30719   CGCCTGTAGGGCGTC        TGCCCGCGTATC GTCA GAGGCGCGGGCG         TTTGTTGTAGCCAGG  93 32
CCO40_RS20340 4245203 .. 4245223 + -11.2   -5.4505   TTAAATGACAAAAAA            GACCCGTT TGTGC AACGGGTC            TTTTTTATTAAGCAG 100 233
        uvrA 4273329 .. 4273364 +  -9.7  -4.77036   ATGCTCAAATAACCT    TCACGCCGCTTTCCG ATTCGC CGGGAAGCGGCATCA     TTTTTCCTCATCCCA  91 29
CCO40_RS20385 NONE
CCO40_RS20390 4274426 .. 4274440 +  -4.2  -4.07885   GGCGTAACAACTCTG               CCAGTT CCG GGCTGG               TTTTGAGAGAGGCTG  62 214
CCO40_RS20425 4281008 .. 4281038 +  -5.6  -5.80364   TAATAGCTCTGCAAA      GAAATTGGGCTTCC ACCCG GGAAGCCC--TTTC      TTTTTTTGTTCGGCT 100 38
         zur 4284849 .. 4284875 +  -5.3  -2.94422   ATATTACCAGCGATA        GTTGTT-AC-GGG TTT CCCAGTCAACAAC        CTCTTTTTCCGCCTG  50 136
        plsB 4290766 .. 4290776 +  -6.8  -2.78384   ATCTCTGTCGACCAT                 CGCA TAT TGCG                 TATCGTAAGCCACCG  52 433
        malE 4297235 .. 4297246 +  -5.8  -3.30124   CCTGTGCCGGATGGC                GGCA TAAA TGCC                 TTATCCGGCCTACAA  56 50
        malF NONE
        malG 4299872 .. 4299887 + -10.4  -5.66684   TATGGTCGTATTTTG              GCGCTC TTCG GAGCGC               TTTTTTTATGCGTTA 100 106
        lysC 4308423 .. 4308435 +  -4.8  -4.13767   CATTCTGTCAGCAAT                TGCC TGACC GGCA                TTTTCGGCTGACGCG  62 377
CCO40_RS20560 NONE
CCO40_RS20565 4310001 .. 4310013 +  -4.8  -2.63723   TTATTTGCAATGGGG                GCAG GCTAG CTGC                ATTCATTAATCAGAG  48 4
CCO40_RS20570 4310347 .. 4310385 + -12.7  -4.75954   CAACGAGGTAACCAT  TAAACAAATCCCCGTCGT TTAT ACGCCGGGGATTT-TTTA   TTTGTTTTAACTTTT 100 23
CCO40_RS20575 NONE
CCO40_RS20580 NONE
CCO40_RS20585 NONE
CCO40_RS20590 4313104 .. 4313123 + -13.6  -3.53091   TTGGCGGTTAATTAC            TTCGGGGC TACG GCCCCGAA             TTTAACACGACGAAT 100 30
CCO40_RS20595 NONE
CCO40_RS20600 4313544 .. 4313566 + -12.7  -3.72576   TAAACACGAATACGA           CTCGCAGGC TTAAT GCCTGCGGG           TTTCCTGACCCAAGC 100 13
CCO40_RS20605 4316001 .. 4316016 +  -2.6  -3.02144   ACGGCGCCGGGAGTA              C-GCATA ATG TATGCCG              TATTAGGCGAAATAG  43 19
CCO40_RS20610 NONE
CCO40_RS20615 NONE
CCO40_RS20620 NONE
CCO40_RS20625 4319106 .. 4319118 +  -6.3  -3.14839   TGAAAATGTAATCAC                TTTGC GCT GCAAA                TATTGCATATATGTA  57 199
CCO40_RS20630 4319616 .. 4319629 +  -3.9  -2.56343   TGTTTTCAGGAATGA               GAAAT GAAA ATTTC                ATTAGTGGTTCCCGT  44 19
CCO40_RS20635 NONE
CCO40_RS20640 4322071 .. 4322089 +  -4.7  -4.36595   TTCTGTAGGCAAAGG             TGAAATT ACAGC AATTTCA             TTTTAACTTTACGTA  66 1
CCO40_RS20645 NONE
CCO40_RS20650 NONE
CCO40_RS20655 NONE
CCO40_RS20660 NONE
CCO40_RS20665 NONE
CCO40_RS20670 4327077 .. 4327099 + -12.7  -3.15354   CGATTGTTGAATCTC           TCGCCGGGT ATAAA GCCCGGCGA           TGTTGAATTAAAGTA  86 31
CCO40_RS20675 4328013 .. 4328040 +  -7.6  -2.86449   TAGAGCGTTTAGTAA        GACCCGGTAGCG TAAA CGCTATCGGGCA         TCGTTCTCGTAACAT  59 164
CCO40_RS20680 4329253 .. 4329266 +  -3.7  -2.52896   AATACGGTAGCGTAA               GCGCC ATCG GGCGA                TACGTTGCCGGATGG  44 102
        panS NONE
CCO40_RS20690 4330741 .. 4330754 +  -2.3  -5.68438   ACGCCGACGCGCGGC               AGACG TTAA CGTCC                TTTTTTCTTTCGTCC  86 17
        pepE 4333116 .. 4333167 + -18.8  -3.79043   CCAGGCCACATTGAA TGCCGAATGGC-GGGCCTACGCGCA TGT TCTCCGTAGGCCCCGCCATCCGGCA TTTCACTTAATACTC 100 43
        iclR NONE
CCO40_RS20730 4340554 .. 4340569 +  -4.7  -2.63112   GCTGGCGGAATATCG              CGGAA ATTCAC TTCCG               TCATGTAGCAAATTT  44 278
CCO40_RS20755 4346967 .. 4347002 + -16.2  -3.55447   ACAGTTACCACACAC    GCAAAGAAGCCCGTCC AGAC GGACGGGCTTCTTCAC     TTGTCTGATGCCTGG 100 145
        purH NONE
        purD 4355965 .. 4355992 + -10.4  -5.00616   GTAATGCCCAATTGA        CGGGCGGCTTCG GTTT TGTTGCCGCCCG         TTTTTTCCAGCGCCG 100 71
        zraP 4359364 .. 4359387 + -16.8  -3.08679   GGTAAAGCATGTTTG          CCGAATGGCG GCTT CGCCATTCGG           TATTCCATCAAAAGG 100 36
         rsd 4364360 .. 4364382 +  -6.8  -3.75378   ACGGGTAGTTTACTT           CAGCCCCCTC TTC GGAGGGGCGG           TTATCTTGTCGGAGT  66 55
        thiC 4366584 .. 4366599 +  -3.2  -2.90615   CTCAAGCGGGAGGAA              GCCTGA TGTA TCAGCC               TGATTTCCCGACCGT  44 20
        thiE NONE
CCO40_RS20850 NONE
        thiS NONE
        thiG NONE
        thiH 4370111 .. 4370134 +  -8.8  -6.14618   ACGTAATGCGAAAAA          CGGGAGATTG TTAT CGACCTCCCG           TTTTTTTATTTTGTC 100 78
CCO40_RS20875 4371488 .. 4371515 + -12.8  -3.61764   TATCCAGCATGAAGC        TGGTGGAGGG ATAAATGC CCCTCCACCA         TTTAACGATTACTCG  95 359
CCO40_RS20950 4386071 .. 4386084 +  -5.3  -2.62983   TCAGGGATGGCCCTC               GTTCA TCGC TGAAC                TGATGTAGCAATAGC  48 189
        coaA 4387075 .. 4387094 +  -7.8  -4.87626   GAAATAACAGAAAAA            AGGGGAGT ACCG ACTCCCCC             TTTTTACTATTCGGC  86 34
        trmA 4399189 .. 4399202 +  -4.5  -3.53811   TCCGCGGTGTCCTCC               TTGCG GTTA CGCAG                TTTAAAGCCAATCCA  54 91
        sthA 4401815 .. 4401826 +  -5.8  -2.52516   CCATTGCGCCACGGA                TGGC CTCT GCCA                 GTTGCTCATAACGGC  48 61
        argE 4407672 .. 4407690 +  -7.4  -3.85698   TTCGCAGTAATTGAC             GCCACG GGTTTTA CGTGGC             TTTATAAAAGACGGC  68 211
         ppc 4410596 .. 4410608 +  -6.3   -4.0056   CAATATATTCCTGTC                TGCAT TTT ATGCA                TTTATAAATCTTTCT  66 115
CCO40_RS21055 4412581 .. 4412605 +  -2.1  -3.49777   TTCGACGTTACTGTT          TCCTCTGTT TGCGATC GGCAGGGGA          TTATCATGTATCACG  47 156
CCO40_RS21060 4413650 .. 4413661 +  -3.6  -4.02334   TCACATAGCGCATCC                GGGG CACG CTCC                 TTTATCCTGTCCATA  57 228
         fsa NONE
CCO40_RS21070 4415491 .. 4415514 +  -9.6  -3.58343   ATAAGGTCTGAGCAA          TACTCCTGAC GATA GCCAGGAGTA           TTTCAGCCTGCTGAC  77 37
CCO40_RS21075 4416559 .. 4416573 +  -8.5  -3.42605   AACCAAACACCAGAT               CGGCG CGGGT CGCCG               TGTATTTTACCTCGC  64 223
CCO40_RS21095 NONE
CCO40_RS21100 NONE
        mscS 4425153 .. 4425165 +  -4.7  -4.08216   CACCATCTGTTCATT                CAGCG CGT CGCCG                TTTTCGAAAAAGTGA  62 420
        metJ 4429061 .. 4429087 +  -6.5    -5.055   TACTGATAGCAAAGC         ATGCGGTCAGA ACGCC TCTGGCCGCGC         TTTTTTAACGATTCC  83 35
CCO40_RS21125 4431318 .. 4431345 +  -9.8  -2.72227   AGATAGTAAAAGTAA        AACAGGCGGAAG CTAA CTTCCGCCTGAA         TGGTTAAAACGTATT  69 45
CCO40_RS21130 4432174 .. 4432187 +  -9.5  -5.61596   TAGAAAACAAAAAAA               GCGCC CTGC GGCGC                TTTTTTTCTGGCGGT 100 38
        priA 4434867 .. 4434877 +  -2.6    -3.494   AAGATCCATCACACT                 TTTT ATG AAAA                 TTCTGTAACCGCTTC  48 72
        cytR NONE
        ftsN 4437108 .. 4437152 +  -2.2  -3.14132   AATCTCCCCCATCTA TACTTGCATTATG-CCCCGTAC GCC GTACGGGGCCGCAATTC-AGCA TTAGTAACCAAGGGG  44 50
        hslV NONE
        hslU 4439077 .. 4439094 + -11.3  -5.07486   TTTCATCACTGTTGA             TGGGGCT GAAA AGCCCCA              TTTTTATTGGCGCTA 100 56
        menA 4440053 .. 4440067 +  -5.8  -3.08032   TTTAACTGACAAATA               TCAATT AAC AATTGA               TGATTTTGCCAACAG  52 36
        rraA 4440629 .. 4440644 + -11.8   -5.3236   CGAGTGATCAAAAAA              GGCGCC GTAA GGCGCC               TTTTTTATGCGTTGT 100 34
CCO40_RS21180 NONE
        glpK 4443873 .. 4443902 +  -9.3  -2.66602   CGCCATCCGGCAAAA       TCTTTGTGCGGAG GCAA CTCCGCACACACA        TCAATTATTCCCTCC  66 44
        glpX 4444997 .. 4445018 + -10.9  -2.74122   TTGTTAGTTAGAGCC           TTCCAGCCT CGCG GGGCTGGAA            ATCTTTCTCCTGACG  74 46
         fpr 4446304 .. 4446320 +  -3.6  -3.65351   CAAATCCAGAAATCA              CGGCGT CCGAT ACGCCC              TTTAAATGAGAATAA  53 510
CCO40_RS21205 4447105 .. 4447125 +    -4  -3.29727   CTGTTTCACAGACCA           T-GCTGCTC TGAC GAGCGGCCA            TCTTCCTTAATTCGC  50 80
        tpiA 4448006 .. 4448020 +  -2.7   -4.0162   GGCCTGATAAGGTAA               AGCCG CCATC CGGCA               TTTATGCTGTGGAGG  56 101
        lsrR NONE
        lsrK NONE
CCO40_RS21260 4458042 .. 4458054 +  -6.3  -2.54276   ATGCAATATCAAGCT                GTCAT TTG ATGAC                CTGTTGGTTCAAGAT  53 114
        cpxR 4468444 .. 4468458 +  -2.8  -3.53091   ATCTGATGGTTTCCG               CTTCAT GAT AGGAAG               TTTAACCGCGCGCAT  48 18
        cpxA 4469828 .. 4469849 + -15.9  -5.36441   CGAACCTAAAAACCA           TCGGCCTGC GAAT GCAGGCCGA            TTTTTTATCTCGCCG 100 32
CCO40_RS21345 NONE
CCO40_RS21350 NONE
CCO40_RS21355 4474838 .. 4474850 +  -2.6  -3.28712   ATCTCGTTGCCGGAT                GGCG ATTCG CGTC                TTATCCGGCCAACGC  46 59
        rhaT 4477310 .. 4477343 + -10.3  -3.55444   TAATCGCTTTGATTA     CTGAGATGACGCC ATTGGCTC GGCGTCATCCCGG      TTTCCCGCGTGAACA  77 38
        rhaB NONE
CCO40_RS21385 4482179 .. 4482230 + -13.8  -3.30243   GGCCGGATAAGACGC CCGCGTCGCCATCCGGCAAT AAATGAAACACG ATTGCCGGATGGCGCTGCGC TTATCCGGCCTACGT 100 60
        rhaD 4483131 .. 4483142 +  -7.2  -3.80625   ACCTCCCAACTCAAC                GCCG GATG CGGC                 TTTGCCTTATCCGGC  68 42
        fucO NONE
        rhaM 4484702 .. 4484738 +  -9.4  -5.49579   TCTATCTGCAGTAAG   TCGTGTGCCCGGT-GGC GCAA GCTTACCGGGCCTACGG    TTTTATTTTTTGTCG 100 27
CCO40_RS21410 NONE
CCO40_RS21415 4486690 .. 4486704 +  -8.5  -5.10208   ACATAAACGAAAAAA               GCGCC TGATC GGCGC               TTTTTATTGGCGTTA  91 295
CCO40_RS21425 4489163 .. 4489177 +  -8.5  -5.26875   GCGACTGTCGAAAGA               GCGCC CCAGA GGCGC               TTTTTTCGTTCGAAG  95 99
        fdnG NONE
        fdxH NONE
        fdoI NONE
        fdhE 4496403 .. 4496418 +  -4.6  -4.82901   CGCTTTCCTTTGCCT              CGCGCT CCCC AGCGCA               TTTTTCTCAGGCCGC  74 517
CCO40_RS21465 4497719 .. 4497773 + -10.2  -3.96148   CTAAAATTCAATTTT GTTTTCAACTTGAAAACTGGATAACG TTG CGCTAAATTGTTTTCAGGTTGAAAAC TTTGTAATGGAACGA  82 37
CCO40_RS21470 NONE
CCO40_RS21475 4498542 .. 4498567 + -12.7  -3.27298   GCGGATGCCTTCATC         GAGTAGTTGGA TATG TCCAGCTACTC          TTCCTCATTCCCGCC  86 20
        yihU NONE
        yihT NONE
        yihS 4506604 .. 4506642 +  -4.1  -3.74251   AAATAAGCCTGGTAA  CGACGGCATATCAGCAA ATAAACA TTGC--ATATGCCGTTG  TTTAGTAAGGGTATC  55 39
CCO40_RS21525 4507592 .. 4507623 +  -3.1  -4.25074   TTTGTGCAGGATACC      TATTACCCTGACT TAAAAC AGTCAAAGTAATA       TTTTAGAATTTGATA  60 53
CCO40_RS21530 4508543 .. 4508574 +  -7.4  -3.36991   ATAAGTGCTTGCTTT      GTTCAGGCGCTACTT CAA GAGTAGCGCAT-AAC      TATTTAAGGCTAATG  63 40
CCO40_RS21535 NONE
CCO40_RS21540 4512134 .. 4512145 +  -7.2   -2.5805   ATAATAATGACTGAT                GCCC TTCG GGGC                 GTTGTAAGGAGTGGT  57 43
CCO40_RS21545 4513590 .. 4513619 +  -4.4  -3.21872   AATTAAACGACGCTT      GCCGCTTTATCCAT CCCG ATGGAT-G-GCGGC       TTCCCTATATTTGAA  50 35
        ompL 4514375 .. 4514395 + -10.4  -2.80195   CGAATCTGCATCACA            GCGGGTAG TTGTT CTGCCCGC            TCATTCATCCTGAAT  71 60
CCO40_RS21555 4515336 .. 4515389 +  -4.5  -3.22995   TATGAATGCGATGTA CACCGAGTGATTGAGTAGGGGAATG TGCA CATTCCCCTACTCAACGATAAAGGG ATTTATTGTGATTAC  50 16
CCO40_RS21560 NONE
CCO40_RS21565 NONE
CCO40_RS21570 NONE
CCO40_RS21575 NONE
CCO40_RS21580 4520094 .. 4520120 +  -8.6  -4.87665   ATGTGAATAAAAAAA         CCCCGCCGAGTT TTC ATTTCGGCAGGG         TTTTTATCCGTAAGA  89 31
        glnA 4523913 .. 4523930 + -11.3  -5.24129   CCGTGGAAACTTTCA             GCCCATC CCAG GATGGGC              TTTTTTCTCCACCAA 100 187
        glnL NONE
        glnG 4526527 .. 4526550 +  -6.8  -3.93038   AAGATTAATAATTGA          GCGCAAAA CGCTGCTA TTTTGCGC           TTTACTGTTCCGATG  68 59
CCO40_RS21605 NONE
        yihA 4530118 .. 4530129 +  -7.2   -2.5294   CCGCTATGCCGGATG                GCGC CGCT GCGC                 GTCTTATCCGGCCTA  57 45
CCO40_RS21635 4534500 .. 4534524 + -14.3   -5.8096   TAAAACATCTTATAA          AAACGCCGGTC AGT GACCGGCGTTC          TTTTTATTTTTTATC 100 10
        mobA NONE
        mobB 4537921 .. 4537962 + -17.5  -3.76224   CCGACAGACTACAGA TAAAACAAAAGGCCCTGTC TTCC GACAGGGCCCTTCGTTTTA  TTTGATGCCTGGCAG 100 280
        fadB NONE
        fadA 4551217 .. 4551235 + -13.1  -5.04385   TTAGTTGCCGTTTTT             CCCGCCC GTCAG GGGCGGG             TTTTTTCACCGTATG 100 181
        rfaH 4556401 .. 4556415 +  -4.2  -3.52204   GCAGATACGCGGGCT               CGTTGC GTC GTGACG               TTGGTTTCGGCGTAA  52 152
CCO40_RS21785 4565488 .. 4565502 +  -2.8  -5.72118   TCGCCACGTTAGCTA               TGCTTT ACC ACAGCA               TTTTTTATATTTTTT  89 108
        metR 4570732 .. 4570754 +  -4.1  -2.72344   TGATACCCAGCGTCC          CGGCGTCTAC CTGG GTAG-CGCCA           TAGTTCCACATAAAG  45 119
        rhtB 4574284 .. 4574301 +  -3.3  -3.28712   GCGAAAATACCCCAG             CG-CGCCG CAG CGCCGACG             TTATCGCCGACAAAC  45 240
CCO40_RS21840 NONE
        rarD 4579169 .. 4579198 +  -4.9  -3.44051   TATAATCTGAAAAAA       TATGCCTCCCCTT GTAA GGGGGGTAGCATA        TTGTCATGCTAACGA  56 59
CCO40_RS21850 NONE
CCO40_RS21855 4580028 .. 4580063 + -14.8  -2.52933   TGGAGCCTGTAACTT    TTCAGGGTGGTTCAGC CGCA GCTGAATCACCCTGGC     CTTAATGCCTTACAA  89 29
CCO40_RS21900 4587757 .. 4587767 +  -3.2  -2.71712   TAGTTTATACGTGGA                 TTGG CAG CCAG                 CTTTACCGAACAGCA  43 169
CCO40_RS21905 4588243 .. 4588261 +    -6  -3.29739   GCTGAGTTTTATCCT             TTACCGCT CAC AACGGTAA             TTCGTATCGGTTCCA  59 7
        cyaY 4588659 .. 4588683 + -12.1  -3.25823   TTCGTTGATTTATTT          GCCGGATGCGC TTT GCTTATCCGGC          TTACTGTAGGCCCGG  83 33
        hemC NONE
        hemD NONE
        hemX 4594516 .. 4594544 +  -2.5   -4.3587   GCCGCGCCGCAAGGA        GAATAATGATGCT AAA AGTATTATTGCTC        TTTGTGTTGTTGCTC  60 20
        hemY 4596090 .. 4596106 +  -9.3  -4.16943   ACGCGATTGTCATCC              CCCCGCC GCT GGCGAGG              TTTTAGCGTGTCGCC  82 395
        rhlB NONE
        gppA 4615877 .. 4615887 +  -6.8  -3.66178   TTCGCTCGCTTTGCC                 GCCA TCA TGGC                 TTTCAGATTAGCCAG  64 87
        ppiC 4619180 .. 4619190 +  -4.6   -3.5394   GATTTTACCTTCAAA                 CTGC GGC GCGG                 TTTCGAACGCGGTTT  52 507
        ilvY 4621314 .. 4621336 +  -4.8  -3.83771   ATACGGCTAAGCATA           TTCACCAGAG CAT CAATGGTGAA           TTTGCTGCATTTCTT  58 77
CCO40_RS22120 4630730 .. 4630742 +  -6.2  -5.15167   GTTGGCGTAAAAAAA                GGGC ATTAC GCCC                TTTTTATTAATCATC  83 31
        hdfR 4632117 .. 4632136 + -10.8  -4.06419   TTAGGCAAAAAAAAA            TCCTTAGC AGAT GCTAAGGA             TTATTTCTGGCAGGG  86 100
CCO40_RS22165 NONE
        mdtD 4640447 .. 4640465 +  -6.7  -2.52946   CCGCCCGATACCCTT            CCAGC-CG TAAA CGCGCTGG             CGTTTTGTCCAGCGG  51 395
        ravA NONE
        viaA 4651399 .. 4651417 + -10.2  -2.71712   CGACTGCCCAATCCC             GCCGCCGA TGG TCTGCGGC             ATTTCGCCGCGCAGC  66 144
        asnC NONE
        mioC 4653700 .. 4653715 +  -6.8  -3.92373   ATCTTCTTTTTAATA              G-CCCGG ATC CCGGGGC              TTTCTCCATCGGCTA  68 306
        mnmG 4655739 .. 4655764 +  -8.9  -3.04089   CCTACAAATTTGTAG         GCCCGATAAGC GAAA GCGCATCGGGC          ATTTGATTATTAACA  68 77
        rsmG 4656472 .. 4656489 +  -3.4  -3.30038   AAAAATCGACAGGTA             TAACGC ATTTCA GCGTTG              TTACATTTAACTCTG  48 84
        atpI NONE
        atpB NONE
        atpE 4658513 .. 4658525 +  -3.3   -3.4052   CGTGATGTTCGCTGT                CGCGT AGT AAGCG                TTGCTTGAATTAAGA  48 19
        atpF NONE
        atpH NONE
        atpA NONE
        atpG 4662063 .. 4662073 +    -4  -3.73968   GGGGCCGCCGCGGTT                 TAAC CAG GTTA                 TTTCGTAGAGGATTT  55 23
        atpD NONE
CCO40_RS22285 4663936 .. 4663955 +   -10  -6.26417   CTTGAAAGCATAAAA            CCAGTCTG ATTG CGGACTGG             TTTTTTTTTATCCTC 100 47
CCO40_RS22290 4664867 .. 4664886 + -11.4   -5.1417   ACGCGCAACGGAAAA            CCAGCGGC CTCT GTCGCTGG             TTTTTGCTTTTCTGA 100 50
        glmU 4666598 .. 4666612 +  -5.6  -2.83271   GGATAAAATAATCCT               CCGCTC CAT GAGCAG               TACTTATAAAAATAA  50 91
        glmS 4668575 .. 4668592 + -12.7    -5.626   TTGCACCAAGCAGAA             GGCCGTC GACA GACGGCC              TTTTTTTGTGCGCTG 100 50
CCO40_RS22310 NONE
CCO40_RS22315 4672811 .. 4672837 + -12.2  -5.96894   CATCTCCCCCTGCAG         GCTGGTCTGGTG TCT CCCCGGGCCAGC         TTTTTTTATTTCCAT 100 43
        pstS 4674102 .. 4674115 +  -3.1  -3.72695   ATCCGGCAGGGGCAA               CGTCGT AAA ACG-CG               TTTAATGGAAAGAGT  53 127
        pstC NONE
        pstA 4675997 .. 4676022 +  -8.3  -3.10175   TTAAAGACATTGTAG         GCCTGATAAGCG TAG CGCC-ATCAGGC         ATTATTTTACGGCGT  66 37
        pstB NONE
        phoU 4677646 .. 4677672 +  -8.7  -2.84878   GTACAGATGCTGTAG        GCCGGATAAGCG TCAG CGCC-ATCCGGC         ATTTCAGTTAACGCG  65 86
        adeP 4679861 .. 4679883 + -14.8  -4.58283   CACTGATGAAATGAA           CCCTCGCCCC ATC GGGGGGAGGG           TTTTTAACGAACTTA 100 35
        rpmH 4687453 .. 4687466 -  -2.3  -3.58343   TTTATTACTTGGAAA               CGGTC AGAC GAGCG                CGGCCTTTAGCACGA  49 1
        rnpA NONE
        yidD NONE
        yidC 4685086 .. 4685103 - -12.7   -5.4505   TGTTGCAATAAAAAA             GGCGGTC ATAT GACCGCC              TTTTGATTGTAGGCC 100 118
        mnmE 4683501 .. 4683543 -  -6.4  -4.53163   CTACACAGTAGAAAA CGT-TTCATAGCGGCCTCAC GAAAA GTGTGGC-GCTAAGAATACG GGGCGACGTTGCGCG  76 173
CCO40_RS22370 NONE
        yidZ NONE
CCO40_RS22360 NONE
CCO40_RS22355 4679861 .. 4679883 - -14.8  -3.57418   CACTGATGAAATGAA           CCCTCGCCCC ATC GGGGGGAGGG           TTTTTAACGAACTTA 100 38
        yieH NONE
CCO40_RS22305 4668575 .. 4668592 - -12.7  -3.54029   TTGCACCAAGCAGAA             GGCCGTC GACA GACGGCC              TTTTTTTGTGCGCTG  93 134
        asnA 4650839 .. 4650860 -  -5.7  -2.76263   GGGAGGATTTAACGA           GCAGTGCGC AAAA GCGTTCTGC            CTGGCGTTGATGCGC  50 450
         kup 4646096 .. 4646106 -  -2.4  -3.17075   GGCCGGGTAAGCCAA                 CGCG GCC CCCG                 GCATGTTGATGGGAG  44 42
        rbsD NONE
        rbsA NONE
        rbsC NONE
        rbsB 4641996 .. 4642019 -  -9.5  -2.75844   GGTTCCACGTCAAAG          TGCGCCACC GGTTAG GGTGGCGCG           TGCCCTGCTTTTCTT  69 114
        rbsK NONE
        rbsR 4639810 .. 4639823 -  -4.5   -3.4252   TCTGACGGACGATAA               TGCCA GCAG CGGCA                ACAGCGTTCTGGCGG  51 245
CCO40_RS22160 4635878 .. 4635891 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGTACGCTTCTT  40 46
CCO40_RS22155 4635680 .. 4635715 -  -9.2  -4.00532   TTTTTAAAGAGCAAA    TATCTCAAACGTGACT CGTA AGTCAGTTTTGAGATA     TTAAGGCAGGTGACT  79 61
CCO40_RS22150 4632480 .. 4632491 -  -4.4  -2.78679   TGCCGCCAGGCAAAT                TCTG TTAT CAGA                 CCGTTTTTACGTTCT  47 102
         rrf 4632325 .. 4632340 -  -3.3  -2.82742   ATTCTTTTACAACCA              CTGAT TTTTAC ATCAG               TTTACTGCTTAATTT  43 44
CCO40_RS22140 4632213 .. 4632232 -  -2.8  -2.79684   CTACCAATTGAACTA            CGCC-CC TAATTAG GGTGGCG            GAACGGACGGGACTC  41 21
CCO40_RS22135 4632117 .. 4632136 - -10.8  -6.11644   TTAGGCAAAAAAAAA            TCCTTAGC AGAT GCTAAGGA             TTATTTCTGGCAGGG 100 33
        maoP 4630730 .. 4630742 -  -6.9  -5.40072   GTTGGCGTAAAAAAA                GGGCA TTA CGCCC                TTTTTATTAATCATC  91 32
        ilvL 4628706 .. 4628729 - -13.8  -5.78622   TCAGGCCAAAAAAAA          CCCCCGGACC TTTC GGTGCGGGGG           TCTTAGTTCGTTAAG 100 50
        ilvX NONE
        ilvG NONE
        ilvM NONE
        ilvE 4625733 .. 4625747 -  -4.4  -2.78679   TCCTGTGACGCAAAT               TATTTT GGG AAAATA               TTAATTTTATTTATT  47 39
        ilvD NONE
        ilvA 4622162 .. 4622183 -  -8.7  -2.63479   AATATCTGGATATCA           GGCCCAC TTTACTTT GTGGGCC            CGAAAAACTAAACGC  63 45
CCO40_RS22080 NONE
CCO40_RS22075 4621211 .. 4621227 -  -9.4  -5.40072   CTGCGCGCAAAAAAA              GCGGCT GCATG AGCCGC              TAATTGATGCGTTCT 100 63
        ilvC 4618703 .. 4618726 -   -16  -5.64421   ATCGCAAATAAAAAA          CCGGGTGGCG CTAG CGCCACCCGA           CAAGGTATATCAACC 100 35
         rep 4615581 .. 4615595 -  -2.7  -4.30576   GCTTCATCAGCAAAA               CGCGG TACCG CCCCG               TGTTGCGGAACAGCT  62 285
        trxA 4612417 .. 4612467 - -10.6  -2.74563   CTGATACCTTAATCA TTCGTCGAATGACAGACGC-CTG ACCATA CAGCGCCTTTGTCATTCGACGTA TAAAAGGTATTACGC  74 35
CCO40_RS22595 NONE
         rho 4610754 .. 4610785 - -14.6  -4.20696   GGATGAATCGCAAAA      CAAAAACGCCACGT AAAA ACGTGGCGTTTTCA       GGTAAAGACCAGGTT 100 39
        wecA NONE
        wzzE 4608373 .. 4608396 - -12.5  -3.06696   TTCTCTTCGAATAGA          CAGTAGGGG CCCAGC CCCCTACTG           CAGAGGTGTTGCTAA  83 37
        wecB NONE
        wecC NONE
        rffG 4604825 .. 4604835 -  -8.2  -3.07994   CGTAATGGGATGCAA                 CCGG GTA CCGG                 AACCTCCCGCCAGAA  62 86
        rffC NONE
        rffA NONE
        wzxE NONE
CCO40_RS21975 NONE
        wzyE NONE
        rffM 4598379 .. 4598410 -  -3.8  -3.56092   CGATTATGTTGTAAA      TGAGCAGCGCCAT AAGCACA ATC-CGCTGCTCA      AGTCATCAGAAGGGA  52 44
CCO40_RS21960 NONE
CCO40_RS21955 NONE
CCO40_RS21950 NONE
CCO40_RS21945 NONE
CCO40_RS21940 4596278 .. 4596293 - -11.8   -5.8901   ACAGAAAACAAAAAA              CCCCGC CGAA GCGGGG               TTCAAAATTGGTCGG 100 34
        cyaA 4588739 .. 4588751 -  -2.7  -3.96892   AATCCTCAGGAGAAA                TACTG CTG CAATA                GCGGCGCGTCATGAT  54 3
CCO40_RS21895 4586984 .. 4586994 -  -2.4  -2.56715   ATCCTCAGTAATTGA                 CCTG GGA CGGG                 CCATCTCCCGTTGCG  39 4
        dapF NONE
CCO40_RS21885 NONE
        xerC NONE
        yigB 4583692 .. 4583703 -  -7.2   -5.1166   CATGAAAACTAAAAA                CGCC CGGT GGCG                 CTTCGCTTACCGGGG  86 115
        uvrD 4581398 .. 4581409 -  -7.2  -2.50779   TTAACATCAATATAT                CGCC GGAT GGCG                 GCTTCGCCTTATCCG  57 111
        ysgD 4581136 .. 4581149 -  -4.5  -4.42765   CGGGAAAAAATGAAA               GGTCG CTGA CAACC                GCTAAGGCTATCAGC  66 37
        corA 4580001 .. 4580012 -  -4.4  -3.73294   GAAAAAGAGGTTAAA                GGTA TCAA TACC                 TGGAGCCTGTAACTT  58 86
        pldA 4576650 .. 4576671 - -12.3  -4.63479   CACCATAAATCAAAA           CAGGCGCTA TTTT CAGCGCCTG            CGAGAGAAACTGCAA 100 60
        recQ NONE
        rhtC 4573720 .. 4573730 -  -2.4  -2.50816   TGGGTATCCAGCAAT                 GGCG CGC CGCA                 GGCGCTATCGATCTG  38 404
        pldB 4572331 .. 4572341 -  -4.6  -3.91798   TAACCTCTAAGCAAA                 GCGA TTT CCGC                 TGGATAAATTAGGCT  59 6
        yigL 4571474 .. 4571490 -  -6.6  -3.12999   GTAGCGGAGAGTGAA              GTTGAC AACTG GTCAAC              TAACAAACAATCACA  58 41
CCO40_RS21805 4570214 .. 4570224 -  -3.2  -4.25104   CGCTGGCCAGCAAAA                 CGCA GAT TACG                 CCGGAAGATTTAGCC  62 327
        metE 4566830 .. 4566846 -  -9.4  -2.72471   GCGCCATGAGACAAT              GCGACG TTTAT CGTCGC              CAGGGAACATAACAG  69 351
CCO40_RS21790 4565401 .. 4565412 -  -2.2  -3.60316   ACGGTGGGAAAAAAG                GCTA ACCA CAGC                 GCATTACGATGTTTG  49 98
         udp 4563537 .. 4563553 -  -9.4   -5.2853   CACGCAAAAAGAAAA              GGCCGA ACGCG TCGGCC              TTTGCAAAAGAGAGG 100 45
        rmuC 4561953 .. 4561970 -  -2.6  -3.11727   AAGAAGTGTAACAGA             TTGGGC CAATTT GCCCTA              CTCTGCGCCAGGACT  43 58
        ubiE NONE
        ubiJ NONE
        ubiB 4558808 .. 4558818 -  -2.4   -2.8937   ACATACTTTTACATA                 CGAC CGG GACG                 ACATTGACTTGCGGC  41 107
        tatA NONE
        tatB NONE
        tatC 4557081 .. 4557102 - -15.9  -2.62184   CTTGCCCCCATATGA           CAACCGCCC TGGC GGGCGGTTG            TGTTTAGTCTTCAGT 100 29
        tatD 4555898 .. 4555918 -  -3.2  -5.02074   TCACCCTGGAAAAAA            TGGTACGC GGAAA ACGTACCT            CCGTCAGCGAACCGC  76 389
        ubiD 4554067 .. 4554108 -  -2.4  -3.01712   GGTGTCGGGTCAATA CCGACATTTTTCAAGCCGAG TCGC CGCAGCCTGAAA--TGTCGA TGTCCGCTTTCAGTT  42 39
         fre 4553308 .. 4553325 - -12.7  -4.74504   AGGCTAACGTAAAAA             GGGACGC TACT GCGTCCC              ATAAAATAGTTAAAT 100 35
CCO40_RS21720 4551118 .. 4551151 - -18.9  -3.09933   CGGCAACTGAGCGAA     TCCCCGGGCACATAG ATAA CCATGTGCCCGGGGT      GAGCAAAGGCAGCCA 100 132
        pepQ NONE
CCO40_RS21700 NONE
        trkH NONE
        hemG 4543471 .. 4543489 -  -3.2  -2.52623   TTTGCCTGACAAGAG             GAAATTTA AAA TAATTTTC             TGAGTGCGCACTTTT  42 53
CCO40_RS21685 NONE
CCO40_RS21680 4541403 .. 4541416 -  -5.3  -2.71745   CGTGGAATAACGAAG               CATAC ATCA GTATG                TGAGTTATTTCACAA  49 61
CCO40_RS21675 4541206 .. 4541239 -  -4.5  -4.49756   TTTTAAAGAGCAAAA     CTTCGCAGTGAACCC TTTC AGGTACACTCTGAAG      TATTTTTTCGTAAAC  69 51
CCO40_RS21670 4538090 .. 4538101 -  -4.4  -2.78679   TGCCGCCAGGCAAAT                TCTG TTAT CAGA                 CCGTTTTTACGTTCT  47 102
         rrf 4537917 .. 4537966 - -22.5   -2.7035   CTCACCGACAGACTA CAGATAAAACAAAAGGCCCTGTC TTCC GACAGGGCCCTTCGTTTTATTTG ATGCCTGGCAGTTCC 100 28
CCO40_RS21650 4536245 .. 4536255 -  -8.2  -3.62597   TTTACTCTTTAATAA                 CGCC GCG GGCG                 CGTAAAAGCGCCGTT  69 1
CCO40_RS21645 NONE
        dsbA 4534503 .. 4534521 -   -16  -4.87273   AACATCTTATAAAAA             CGCCGGTC AGT GACCGGCG             TTCTTTTTATTTTTT 100 32
        polA 4530182 .. 4530208 - -18.1  -5.45652   ATGCCCAATAAAAAA         CGCCCCAGTCA TAAAC TGACTGGGGCG         GCTAAAATATTCAGC 100 250
CCO40_RS21620 4528943 .. 4528996 - -17.7  -3.99405   GGAATCTAGCAGAAA GCAAGCAAAGAAAAAAGGCGACAGA GTAA TCCGCCGCCTTTTTTCTTGACTCAC GACCCTTAACGGGTT 100 31
        yihI 4528317 .. 4528335 -  -6.1   -3.3636   CCACACCAGATAACA             TATAACC GGAAG GGTTATA             AGCAGGACGGGCAAG  59 58
        hemN 4526527 .. 4526550 -  -7.5  -2.68544   AAGATTAATAATTGA          GCGCAAAAC GCTGCT ATTTTGCGC           TTTACTGTTCCGATG  57 281
        typA 4520094 .. 4520120 -  -8.7  -5.80364   ATGTGAATAAAAAAA         CCCCGCCGA GTTTTCATT TCGGCAGGG         TTTTTATCCGTAAGA 100 48
CCO40_RS21505 NONE
CCO40_RS21500 4501548 .. 4501574 -  -6.6   -4.3821   AAAAGACAATAGAAA         CGCAGACGAT GCCCAAT ATCGCCTGCA         TCACAGCGCCGTTTT  74 89
        yihX NONE
CCO40_RS21490 NONE
         dtd NONE
        fabY 4498357 .. 4498368 -  -3.6  -4.39828   AACACCTGGAGAAAA                CACC CCCT GGCG                 TTTCAGTATTGCGAA  66 219
CCO40_RS21460 NONE
CCO40_RS21455 4495666 .. 4495678 -  -3.3  -4.07568   GTCGTGCGCGTAAAA                TGCAG TAA CTGCG                AACAGAGCCGCGACT  58 305
        fdhD 4489163 .. 4489177 -  -9.2  -3.35597   GCGACTGTCGAAAGA               GCGCCC CAG AGGCGC               TTTTTTCGTTCGAAG  71 205
CCO40_RS21420 4486690 .. 4486704 -  -8.5   -5.4387   ACATAAACGAAAAAA               GCGCC TGATC GGCGC               TTTTTATTGGCGTTA 100 96
CCO40_RS21405 4484763 .. 4484777 -  -8.5  -3.28712   TTGTCGGCCGGATAA               GGCGG TTACG CCGCC               ATCCGGCAATTTCAA  69 37
        rhaS 4478221 .. 4478232 -  -7.2  -3.06796   CCGTAGGCCAGGTAA                GGCG CAGC CGCC                 ATCCGGTATTAAAGG  60 88
        rhaR 4476863 .. 4476873 -  -2.4  -3.19656   AAACCGATGCATGAA                 GCTG CTG CCGC                 GCTTGGCGTTGACCC  43 446
CCO40_RS21360 4474906 .. 4474928 - -14.2  -5.48825   CACCAGGTAAAAAAA           CCGGCTACCT ATA AAGTAGCCGG           AAAAGGGAATAAATA 100 58
        sodA 4470998 .. 4471015 - -11.3  -5.71712   GCGGATACAAAAAAA             GCGAGTC ATCA GACTCGC              TTCTACAGACGTGCA 100 48
        yiiM NONE
CCO40_RS21330 4469826 .. 4469851 - -13.3  -3.44381   AGCGAACCTAAAAAC         CATCGGCCTGC GAAT GCAGGCCGATT          TTTTATCTCGCCGTC 100 46
        cpxP 4467044 .. 4467062 - -14.6  -6.02914   TGGAGATAAAAAAAA             CCCCCACA TCA TGTGGGGG             AAGACAGGGATGGTG 100 65
        fieF 4465946 .. 4465960 -  -2.9  -3.39432   AAACGATCCAACGAA               TATAC AGATA GTATA               ACAATCCCTTCCTGC  46 117
        pfkA NONE
CCO40_RS21300 4463675 .. 4463699 - -15.1  -5.63517   GTGGCAAAGAAAAAA          CCCGGTAACAT AAT ACGTTACCGGG          TTTATAAACGGTTTA 100 38
CCO40_RS21295 4462725 .. 4462766 - -17.7  -3.37053   AGAGAGTGTAACTAA CCATCAAAAGATATAAAGG TATA CCTTTATATCTTTTGATCG  GTTTCACATATTTTT 100 115
CCO40_RS21290 NONE
CCO40_RS21285 NONE
CCO40_RS21280 NONE
CCO40_RS21275 4458152 .. 4458191 -  -2.7   -4.4891   GCCAGCAGGACAAAA  GAGCCATCGCTTTGGCG TATCAC CGCCAGCGCGATACATC   ACAGCATCCCCGCCC  63 286
        lsrA NONE
        lsrC NONE
        lsrD NONE
        lsrB NONE
        lsrF 4449121 .. 4449160 -  -2.8  -3.86571   CCAAATAAAATAACA  GTCATCCCCATCTCCTCGC ATC GGTAAAAGATGGGGAAG-C  GATCTCATTTAACCT  54 34
        lsrG NONE
CCO40_RS21215 4447691 .. 4447724 - -11.7  -3.57263   ATCGGTACCGGTAAA     TCTGCAACGCCTGCG CAGG CGCAGGCAGTGCACA      AATTCATCCGTGACC  81 323
CCO40_RS21200 4445772 .. 4445798 -  -6.5  -3.83409   CGACAGATGACTAAA         CATCTGCGCCG CCGAC CGGGGCATATG         ACGGCTGAACATTAC  64 152
        zapB 4440629 .. 4440644 - -11.8   -5.1675   CGAGTGATCAAAAAA              GGCGCC GTAA GGCGCC               TTTTTTATGCGTTGT 100 223
        rpmE 4432166 .. 4432195 - -12.3  -4.38712   GTTATCCCTAGAAAA       CAAAAAAAGCGCC CTGC GGCGCTTTTTTTC        TGGCGGTAACTTATT 100 36
        metB NONE
CCO40_RS21110 4424838 .. 4424851 -  -5.2  -3.08464   TGATGAGGGAGCGAA               GCGC AACCCG GCGC                TTCGCTCACGAACTT  51 48
CCO40_RS21090 4419777 .. 4419809 -  -4.9  -3.95036   AATCACGCCAAAGAA      TGAGGAATATTCAGC AAA GTTGAATTTTCTTCA      TGTCACGCCGCGACA  61 65
        metF 4418742 .. 4418757 - -10.4   -4.1711   ATGAGGTGTAATAAA              GCTCCC GGCA GGGAGC               TGGAGGTTATAAACC  85 32
        katG 4416372 .. 4416403 - -15.2  -4.39989   ATTAAACGAGGAAAA      CGTCAGCGACTACC GAAT AGCAGCCGCTGACG       AATTAACCTGTCAGA 100 41
        argC NONE
        argB 4404429 .. 4404440 -  -7.2  -3.30243   ACGTAGGCCCGATAA                GGCG CAGC CGCC                 ATCGGGCGAACAAAT  63 43
        argH 4402905 .. 4402930 -  -5.9  -5.40072   TTTTGCGTAAAAAAA         CCCGGCGTCGC TGAT GCTCGGCCGGG          CAGTATTGCCTGATG  87 59
        oxyR 4401445 .. 4401466 -  -5.9   -3.5627   ATACCATTCCGGAAA           TCAGTTCTG TCGG CAAAACCGA            GCAGCAGTTAACGGC  57 321
        fabR NONE
CCO40_RS21010 4399127 .. 4399164 - -11.3  -3.16336   ACCGCAAGGTAAAAT   GTACGTCGGATGGCCGGT TAT ACCG-CCATCCGGCATTC   GCACACTATTCCGCG  81 31
        btuB NONE
        murI 4394635 .. 4394647 -  -4.9  -3.16068   TCTTCAATTTAAAAG                TTTGA TGC TCAAA                GAATTAAACTTCGTA  52 387
CCO40_RS20990 4393054 .. 4393067 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGACCGTTTCTT  40 46
CCO40_RS20985 4392893 .. 4392906 -  -5.3  -2.71745   CGTGGAATAACGAAG               CATAC ATCA GTATG                TGAGTTATTTCACAA  49 61
CCO40_RS20980 4392696 .. 4392729 -  -4.5  -4.49756   TTTTAAAGAGCAAAA     CTTCGCAGTGAACCC TTTC AGGTACACTCTGAAG      TATTTTTTCGTAAAC  69 51
CCO40_RS20975 4389528 .. 4389540 -  -3.3  -3.05816   TTATTGCGTACTCAA                CTCTG AAT CAGTG                CTGAAAATCGTCTCT  45 68
         rrf 4389218 .. 4389267 - -22.5  -2.62616   CCATCCGGCAGACTA CAGATAAAACAAAAGGCCCTGTC TTCC GACAGGGCCCTTCGTTTTATTTG ATGCCTGGCAGTTCC 100 28
        murB NONE
        birA 4387076 .. 4387093 - -11.3  -5.57729   AAATAACAGAAAAAA             GGGGAGT ACCG ACTCCCC              CTTTTTACTATTCGG 100 33
CCO40_RS20945 NONE
CCO40_RS20940 4385470 .. 4385490 -  -2.5  -3.05816   TCATTCTGCACTGAA            TATCGAGAG AAA CTCTCTTTA            TTCGAGCCGGTAAGC  43 81
CCO40_RS20935 NONE
CCO40_RS20930 4385206 .. 4385222 -  -4.3   -3.3071   ATATCACCACATCAA              CCAGGCA ACA CGCCCGA              CTTGTTGAATGCTAA  52 76
         tuf 4383921 .. 4383938 - -11.3  -4.60924   GAAAGCGTGCAAAAA             GGGCATC AAAT GATGCCC              TTTTATTGCGCATTG 100 60
        secE NONE
        nusG 4382745 .. 4382773 - -17.6  -5.35224   CCCATAAAAACAAAA        GGCGCGAAATTG TATGT CAATTTCGCGCC        CTATGCAACGATTAG 100 65
        rplK NONE
        rplA 4381470 .. 4381506 -  -6.6  -2.80513   ATATTTCAACAGAAT   CGTGGG-GGTAAGATTG TAGA CAAAATCACCGCCCACG    TAAAGACTAATCTTA  55 38
        rplJ 4380596 .. 4380609 -  -8.1  -3.89695   GCTTGATAAAGACAA               CTGCG ATTA CGCAG                CTTCTTTTGCATCGC  72 18
        rplL 4380105 .. 4380130 - -17.7  -4.64766   CTTACAGCGCAAAAA         GGCTGGTGACT AAAA AGTCACCAGCC          ATCAGCCTGATTTCT 100 65
        rpoB 4375776 .. 4375805 - -13.6   -3.4252   TCGGAGTTAGCACAA       TCTGGTGTCGGG TTTTAC CCCGACACCAGT        GACCTGTTTGAGCGA 100 44
        rpoC 4371487 .. 4371516 -   -10  -2.53164   GTATCCAGCATGAAG       CTGGTGGAGGGA TAAATG CCCCTCCACCAT        TTAACGATTACTCGT  70 33
CCO40_RS20880 4370652 .. 4370668 -  -6.7  -3.19018   AAGACCTTAATGGAA              TTAAATG CTT CATTTAA              TGATTTAAAATTTCC  59 513
        nudC NONE
        hemE NONE
         nfi NONE
CCO40_RS20815 NONE
        hupA NONE
CCO40_RS20805 4359088 .. 4359098 -  -8.2  -2.65993   ACTATACGCAGACCA                 GCGC GCT GCGC                 CAGCAACTGATATCC  56 322
        zraS NONE
        zraR 4355597 .. 4355607 -  -2.4   -4.4648   AGTTGGATGAGAAAA                 CCTC CGA GTGG                 GACGAGCGCGCTTCA  62 334
CCO40_RS20775 4350824 .. 4350837 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGTACGCTTCTT  40 46
CCO40_RS20770 4350626 .. 4350661 -  -9.2  -4.00532   TTTTTAAAGAGCAAA    TATCTCAAACGTGACT CGTA AGTCAGTTTTGAGATA     TTAAGGCAGGTGACT  79 61
CCO40_RS20765 4347438 .. 4347450 -  -3.3  -3.05816   TTATTGCGTACTCAA                CTCTG AAT CAGTG                CTGAAAATTGTTCGT  45 73
         rrf 4347128 .. 4347177 - -22.5  -2.62983   CTCACCGGCAGACTA CAGATAAAACAAAAGGCCCTGTC TTCC GACAGGGCCCTTCGTTTTATTTG ATGCCTGGCAGTTCC 100 28
        metA 4345263 .. 4345278 - -10.4  -5.63517   TTCGGAAATAAAAAA              GGCACC CGAA GGTGCC               TGATTCAACATGCTG 100 71
        aceB NONE
        aceA NONE
        aceK 4339751 .. 4339767 -  -6.5  -3.17527   TATTTATGACGAACA              CCGCGAA CCG TTTGCGG              CCCTCTCTATTTCCG  56 523
        metH 4335017 .. 4335039 - -14.2   -3.4214   ATTGTAAGAAAGAGA           CAAGGCACCC AAT GAGTGCCTTG           TATGTTGTAAGGAAA 100 58
CCO40_RS20715 4333116 .. 4333167 - -20.4  -3.12999   CCAGGCCACATTGAA TGCCGAATGGCG-GGCCTACG CGCATGTTCTC CGTAGGCCCCGCCATCCGGCA TTTCACTTAATACTC 100 32
CCO40_RS20705 4332241 .. 4332256 -  -3.2  -2.78463   ATTTTGCGGATTATA              CCTGTA ATTT TTCAGG               CGATACCAGATGGCA  43 5
CCO40_RS20700 NONE
        rluF 4330338 .. 4330356 -    -6  -3.53224   TACTGGTCCGGGAAA             CCGATTGT TGA AAAATCGG             GCGAAACGGCAAAGG  60 415
CCO40_RS20555 4308112 .. 4308129 -  -4.7  -3.10796   CGCTATCAGGCAATA             CGCTGCC GGAT GGCGACG              CAGGCGCCTTATCCG  49 100
         pgi 4304611 .. 4304628 -    -7    -5.626   TATCTTATAAAAAAA             GCCGAT GTGAAT ATCGGC              CTTTTTATTATCTTA 100 125
CCO40_RS20540 4304002 .. 4304023 - -11.7  -4.13014   TCCAGAGGGGCAAAA           TAACCACAC CGGA GTGTGGTTA            TGGTTAAACGTACCG  93 44
CCO40_RS20535 NONE
CCO40_RS20530 NONE
CCO40_RS20525 4300407 .. 4300421 -  -2.1  -3.28924   GAGGTTTCTGTATAA              CG-CAC AAAT GTGACG               GGCATCTATATTTTT  45 114
        psiE 4299806 .. 4299825 -  -5.6  -2.75183   AGTTTTATCGAAGTA            CCTGCCCG GCAA CGGGCAAT             GCCACTGCCCTCAAG  50 157
        malK NONE
CCO40_RS20495 4293003 .. 4293014 -  -7.2  -2.57581   CCAACCCAAACATAT                CGCC GAAT GGCG                 GCTGGCGCCTTATTC  57 113
        malM 4291968 .. 4291987 - -11.4  -5.75599   GAAATGACAAAAAAA            GGTGCGCC AGGA GACGCACC             AGTTGCTGCAAAATC 100 59
        ubiC NONE
        ubiA 4290373 .. 4290399 -  -7.3  -3.54543   AGCCAGTGCCTGAAA        TGCCCGAT-GGC GTAA GCTTATCGGGCA         ACTGATATGACGTAT  65 83
CCO40_RS20470 4287342 .. 4287357 -    -4  -2.84839   TATATACAGTTAAAG              GTGATT TTGG AACCAC               AAACGGCGCAAAAAA  46 67
        lexA 4286621 .. 4286642 -  -5.1  -3.30124   CCGTAGGCCTGATAA           GCGCAGCGCC ATC AG-GCTGCAC           GATTGCCGGATGACG  54 65
        dinF NONE
CCO40_RS20455 NONE
CCO40_RS20450 4284457 .. 4284467 -  -6.8  -3.85698   GGTTTTGTCCATAAA                 GTGG AAT CCAC                 CAATAGTTATGTGGT  65 395
CCO40_RS20440 4282635 .. 4282655 - -18.3  -3.70068   TAGCATAACGCTAAA            CCGGAGGCG TAG CGCCTCCGG            TGAAAACGCCTCAGA 100 36
        dusA 4281526 .. 4281549 -  -4.5  -5.07523   GATATATAAAGAAAA          CGCCCTGCA AGACTG CACAGAGCG           TGGTGAGATTGACTA  77 56
        pspG 4281014 .. 4281034 - -12.6  -2.54371   CTCTGCAAAGAAATT            GGGCTTCC ACCCG GGAAGCCC            TTTCTTTTTTTGTTC  81 161
        dnaB NONE
         alr 4277383 .. 4277409 -  -8.7    -3.494   CAATGCGCGATACAA        GCCGGATAAGCG CAAG CGCC-ACCCGGC         CCGCCGCGTATTTAA  71 37
        tyrB 4275995 .. 4276045 -   -14  -3.29541   AGGATGATCACAACA GCTATTGTCAGGCCGGAGGGCAAT GTT ATCGCCGTCCGGCCTGAATATTAC ATGACAGCGGCAAAT 100 22
        aphA 4275117 .. 4275135 - -10.3  -5.13521   AAATCATGCAAAAAA             GGAGAGC CTGAC GCTCTCC             TGATTTTTAGTACTC  93 32
CCO40_RS20400 NONE
CCO40_RS20395 4274010 .. 4274027 -  -7.7  -3.70104   AAGCAGGCAAGAGAA             GACAGCG ACGA CGCTATC              CGCGAGTCCGCCGCG  65 236
        ssb1 4269642 .. 4269661 - -12.2  -4.69053   TACCAGGTAAGAAAA            TGCCTGGT TTAC ACCAGGCA             TTTCAGCAGACGAGA 100 86
        siiA NONE
CCO40_RS20365 NONE
        siiC NONE
        siiD NONE
        siiE 4247347 .. 4247370 - -12.4  -4.00868   TTATCCATAAGTAAA          CCCCCTCACC CAAA GGTGAGGGGT           CTCCGTTATTATGCG 100 34
        siiF 4245193 .. 4245233 - -13.6  -3.55444   TGCCGACTCGTTAAA  TGACAAAAAAGACCCGTT TGTGC AACGGGTCTTTTTTATTA  AGCAGTACCACCTGA 100 65
CCO40_RS20335 4242390 .. 4242405 -  -6.1  -2.87769   ACGCATCAAACATTA              GGCGA GTATAT TCGCC               AGCGCCGTCTCCTGT  51 171
        soxR 4241634 .. 4241659 - -13.4   -4.4572   AAGACCGGAAACAAA         CTAAAGCGCC CTTAGC GGCGCTTTAG          TTTTAGGTGAACTCA 100 61
CCO40_RS20320 4240631 .. 4240641 -  -3.2  -4.17958   AATATGCTCAATAAA                 TCGC CAG ACGA                 TGCGCAAACGTTATC  60 118
        ghxP 4238991 .. 4239023 - -13.6  -4.07885   GATGTGTCCTGAAAA     TG-AAAACGGGCGAC CAAC GCCGCCCGTTTTTCA      GAATGAAGGCAGAAC 100 40
CCO40_RS20310 4237242 .. 4237262 -  -8.4  -3.52113   ACCGGGCCACAAAGA            CTACTGAT TTTCT ATCAGTAG            CGCTTCCATCAAATC  71 5
CCO40_RS20300 NONE
CCO40_RS20295 4235026 .. 4235068 -  -5.7  -3.14132   GGGCGTGCGCATTAA TCTTACCGTTTCCTCCGGCCC TGT GGGTCGGAGGAAA-A-TCAGA ACATCACCCTCGCCA  54 21
        nrfA NONE
        nrfB NONE
        nrfC NONE
        nrfD 4226674 .. 4226686 -  -3.3  -3.89501   CAACAGCGCCAGAAA                TCCGG CTT CAGGA                AGGAAGATGTCCAGA  55 41
        nrfG 4223741 .. 4223761 -  -5.5   -3.6502   TATTTGTTATGGAAA            GTTTTTTAC TTC GTCAAAAAC            GAATAATACACTGAG  59 118
        gltP 4221724 .. 4221746 -  -2.7  -4.21194   CCGGACTACCCAAAA          GCCATCTCGC TGCT GCAAAA-GGC           CTCTGAAGATCTGGA  58 478
        proP 4214029 .. 4214043 -  -2.9  -2.87344   TATGCCCGCGAGAGA               TTAAG CGAAC CTTAA               GCGCGAAATTTATTC  42 35
        pmrR 4213849 .. 4213864 -    -9  -3.96483   ACCGTACGGAAAGAA              CAGGCA CCCG TGCCTG               GGTGCTGTTGAAAAA  79 55
        melA 4202776 .. 4202791 -  -4.6  -3.25942   ACGGCTGGAGATTAA              CGGCGT AACC AGGCCG               GAAGCCAGTCGCCAT  50 6
        melB 4200924 .. 4200953 -  -9.9   -3.5393   ATCATGCTGGCGAAA       GGCAACCGTAGCC AGCA GGTCACGGATGCC        TGTAAAAAACATGGC  71 351
CCO40_RS20125 NONE
        dmsB 4191600 .. 4191610 -  -3.2  -2.53382   ACCAGCGGTAACTCA                 TGCA TGG CGCA                 CCTCCCGAATGTTCA  42 12
CCO40_RS20115 4190831 .. 4190842 -  -2.2  -5.03747   AAACCGGGCAAAAAA                CTAC ATTG GCAG                 CGTCCACAGATTGTA  71 14
CCO40_RS20110 4190086 .. 4190114 - -12.5  -3.92592   AGCTGTAATAGTAAA       CTGTGCCCGCTG ACGCAA CAGCGGGCAC-G        ATGGCGGCACAAGTA 100 73
CCO40_RS20100 4187280 .. 4187299 - -10.7  -5.97575   AATTTATAAAAAAAA            GCGGCAG ACTACG CTGCCGC             AAATATGAGGAGGAC 100 194
CCO40_RS22565 4186133 .. 4186143 -  -3.2  -4.05629   AGGAAATTGAAACAA                 GAGA ACA CCTC                 ATTCAGCGAAGTTTA  56 507
CCO40_RS20070 4182602 .. 4182620 -  -3.1  -5.42862   ACAGGCTCAAAAAAA             GAGACCA GATTT CAGTCTC             TTTTTTATCACTCAT  81 53
        fxsA 4173223 .. 4173264 -  -5.2  -2.77861   CGAAGCGAAAACGCA TGGCGTAAGACG-TATCTG TTGGC CGGATAACGCCTCACGCGA CTTATCCGACCAGCA  49 50
CCO40_RS20005 NONE
        groL 4169567 .. 4169602 - -18.4  -4.37971   AAAAGATGACTAAAA    GAAAAACCCCCGGTCA TTTC TGCCCGGGGGTTTCTC     AATTCTGGGAGATAA 100 153
CCO40_RS19995 4169098 .. 4169128 -   -17  -2.79809   GAAAAACGCTAACCA       TATCGCCCTCTGAA TCT TTCAGAGGGCGTTA       CGATTCAGACATATC 100 39
         efp 4166279 .. 4166300 - -12.3  -3.01831   GCGCGAAAAATAGGA           TGGCGCAGC ATAC GCTGCACCA            TTTTTCCCGATAACG  83 45
CCO40_RS19975 NONE
        ecnB 4165833 .. 4165870 -  -8.6  -4.36914   TGCTTCCGGAGAAAA   TCGATTAACGGTACGAC GCCAT GCCGTACCGTTGAT-GA   TTACTGCTGAGCTCT  84 26
        sugE 4164585 .. 4164596 -  -5.8  -4.93877   TCTGAGGAAATAAAA                CAGC AAAT GCTG                 GCCGTCGCGACCCGG  83 108
        epmA 4159377 .. 4159393 -  -9.4  -4.43221   AAATATGCTACAAAA              TGGCGC TTATT GCGCCA              TTTTATCTCGCGAAA  86 56
        yjeM 4157655 .. 4157687 - -14.1  -4.16016   CCATCGGGCAATAAA      CGCCGGATGCGACCC TTG GGGTCTTATCCGGCA      TACGGTCTTTACTCC 100 34
CCO40_RS19920 4157195 .. 4157227 - -11.9   -4.2123   GATCCAGGCAAGAAA      TGCCGGATGCGACCC GTC GGGTCTTATCCGGCC      TACGGGCCGGCAATT  95 109
         orn 4150704 .. 4150725 -  -4.4  -3.96624   TATTTGCAGGATAAA           CAACAAGC TATCAC GCCTGTCG            CCTATGACAGCTATC  60 365
CCO40_RS19890 NONE
CCO40_RS19885 NONE
CCO40_RS19880 4149001 .. 4149016 -  -4.6  -3.14132   TGCGCCGTGGAGTAA              TGCCGT CATT ACGGCG               CTGGAAAGCCGCAAA  50 457
         nnr NONE
        tsaE NONE
        amiB NONE
        mutL NONE
        miaA NONE
         hfq 4141472 .. 4141506 -  -7.2   -3.6279   AAACCCTCTTAATAA    CCA-G-CGGGGGCG ATTATCCGA CGCCCCCGACATGG    ATAAACAGCGCGTGA  67 43
        hflX NONE
        hflK NONE
        hflC 4137630 .. 4137665 - -14.2  -4.37092   ATCGCCCTTATAAAA    GAAAACCACCGGCATCC TTT GGATG-CGGTGGTTTTG    CTGGTCTAAAACCGC 100 51
CCO40_RS19825 NONE
        purA 4135977 .. 4136000 - -11.8  -2.95298   CGTACTCATCATAGA          CCCGGTAA-GC GTA GCGTTACCGGG          CATCAACCATCAATT  80 39
        nsrR NONE
         rnr 4132866 .. 4132886 - -11.2  -2.64877   CCTACAGATAATTCA            CCCTCTTC TGTTT GAAGAGGG            TATTGCTCACTCTGC  77 32
        rlmB 4132027 .. 4132044 -    -7  -6.32216   AGAGATAAAAAAAAA             CCATCC GATTAT GGATGG              TTTTTTCTTAAAAAA 100 52
CCO40_RS19800 NONE
CCO40_RS19795 4130729 .. 4130739 -  -6.8  -4.33417   GCTACCGATAACAAA                 GCAG ATA CTGC                 CCGATAAACAGGCCC  74 108
CCO40_RS19790 NONE
CCO40_RS19785 NONE
CCO40_RS19780 NONE
CCO40_RS19775 NONE
CCO40_RS19770 4125804 .. 4125818 -  -6.4    -3.737   TAATGTTGCAGGAAA               CCCACA GGA TGTGGA               GCGGATTATCGCCCT  60 185
        yjfP 4124208 .. 4124228 -  -3.9  -4.60487   GATTACCGGCAAAAA            TGCCAATCC GCA GGTTTTGCA            ACAGCTTGAAGCCCA  69 62
        ulaA 4120577 .. 4120591 -  -2.8  -4.48987   CGGTCATAATCAAAA               CTCCTT ATT AAGCAG               ACTGTTCTGCCAGTT  63 18
        ulaB NONE
        ulaC NONE
        ulaD NONE
        ulaE NONE
CCO40_RS19715 4117544 .. 4117554 -  -6.8  -2.93901   ATCTGACCAATTACA                 TCCC TGA GGGA                 TAGGATCCCGGAGCG  56 46
CCO40_RS19710 4116787 .. 4116799 -  -9.1  -2.82317   GAAAGAAGAAACTGA                TGCGC GAG GCGCA                ATGTACTACCACCCG  60 156
        rpsF NONE
        priB NONE
        rpsR 4115254 .. 4115264 -  -2.4  -2.50307   CAAAGTCGTATTAAT                 GGAC CGT GACC                 GATTACTGATGGCGA  39 28
        rplI 4114720 .. 4114750 - -11.9   -5.0133   GATGGGGTTAAAAAA       GCAAAACGTCGGC GCTGG GCCGACGTTTCGT       TGCTAGCAAAAACGA 100 51
CCO40_RS19680 4113349 .. 4113362 -  -5.9  -3.32865   GGAAGAACAAAACCA               GCCGC AGAC GCAGC                CTTTCCAGCAGGATA  56 365
        fklB 4112128 .. 4112168 -   -17  -2.52676   CATCTGCTGAAGCCA GGGTTGCCGGATAA-GGCG TTTA CGCCATCATCCGGCAAACC  CGGGGCGCTTACAGA 100 34
        cycA 4110097 .. 4110111 -  -8.6  -4.03811   CATATGATGAAAGAA               GAACAG ATC CTGTTC               CCAATGATCAAACAG  74 386
CCO40_RS19645 4107001 .. 4107017 -  -5.8  -3.78934   GGCGGCGGATAATAA              CTGGCG TCTGG CGCCAA              TCCACAGCGATACGA  63 235
        cysQ 4103748 .. 4103764 -  -7.9  -3.67498   TAACCTTGAAGATAA              CCAACGG GTG CCGCCGG              TAGGCATTGCCGACC  65 479
CCO40_RS19625 4103077 .. 4103097 - -16.9  -3.50335   TGCCAGAAACATCAA            CGGCTCCTG ATT CAGGAGCCG            TTTTTTTTTACTTTT 100 66
        tamA 4098953 .. 4098963 -  -4.6  -2.62316   TAAACTCATAATTCA                 GGCC CCA GACC                 GATATAAAACTGTAA  46 5
        tamB NONE
CCO40_RS19600 4094791 .. 4094813 -  -9.9  -5.55698   CAGAATGTAAAAAAA          CAACGCCACC CGAG GGTGGCG-TG           TTCAGTTCAGGGCTG 100 32
         mpl 4088643 .. 4088664 - -12.3  -4.52857   ATGCCCCATATAAAA           CAGCCAGCC ACAA AGCTGGCTG            ACCGCATAGTCATTT 100 39
        iolR 4087316 .. 4087344 - -15.4  -2.64595   AAGTTTCACCACAAT        GCCGATGATCGC TAAAT ACGATCATCGGC        TTGTTTTTTTACTCC  93 34
       iolT2 4083930 .. 4083957 - -17.2  -2.71263   AAGGTTGTGTAACCA        GCGGAGAATATC TCTG GATATTCTCCGC         TAATATTGGAGAGGT 100 42
        reiD 4079968 .. 4079987 -   -10  -5.72622   CTGACAAATAAAAAA            TGGCCGCA GTAT TGCGACCA             TTCTCATGACGATTA 100 55
        iolE NONE
       iolG1 NONE
        srfJ NONE
       iolI1 4075173 .. 4075206 -  -3.7  -2.71712   TTTTCTGCGCCAAAT     TTCCCGACCGTTACG GCGG CGCCACGGTCGCAAC      CTTTTCACTACTGGT  43 353
        iolD 4069885 .. 4069912 -    -2  -5.10163   AACCGCAAAAGAAAA        GCATCCGTAGTTC TGC GAAAAACGGAT-C        GTTTTATTTTGCCGT  71 129
       iolG2 4068764 .. 4068789 -  -8.3  -4.52589   CCTCGGTATAGAAAA         GCTCTCACACT TTTC AGTGCGAGAGT          TTCTTCATTATTAAT  87 49
CCO40_RS19490 4067429 .. 4067457 -  -7.6  -5.03314   CGTAGGGTGAAAAAA       CCGGC-TTTATCA ATCT TGATAAAAACCGG        TTTAATTTAGTGATG  86 82
       iolI2 4066532 .. 4066560 -    -9  -2.91695   GTCACCTGGAAATTA       GCTGTATCATTGC AACA GCAATGACAC-GC        TGCGATTAATTTGTT  67 3
        iolH 4065556 .. 4065583 - -12.1  -3.55622   GGTAATTGCCGCAAA        TG-ACCGCGCCA GCCTG TGGCGCGGTACA        GGCAAATCCACCCGT  88 43
        pmbA 4063497 .. 4063533 -  -9.4  -3.65201   TAATACCCTGAATAA   TTCGGGTCGCAGGCAGC CAAC GC-GCCTGCAGCCTGAA    GTATGACGGGTATTA  77 38
        cybC 4063010 .. 4063059 - -10.9  -2.79183   GTGATGGGTATTACA TTTTGCCGGATGGCGACCT-GC GGATAAA GCGAAGCCGCCATCCCACAAAA ATTAACGATACTTCT  74 27
CCO40_RS19460 NONE
CCO40_RS19455 NONE
CCO40_RS19450 4061760 .. 4061773 -  -3.1  -5.06414   CCTTTTTAATAAAAA               TCAGCG TTT CGC-GA               CGAAATCCACCCTGT  74 12
CCO40_RS19445 NONE
CCO40_RS19440 NONE
CCO40_RS19435 NONE
CCO40_RS19430 NONE
CCO40_RS19425 NONE
CCO40_RS19420 NONE
CCO40_RS19415 NONE
CCO40_RS19410 4054240 .. 4054257 -  -6.9  -2.52676   GACCTGGGTAAGTGA             GAGCGGC CAAC GCCGCTA              CAGCGCCAAATGCAA  54 518
        mgtA 4044127 .. 4044167 -  -4.9  -4.37554   AAATTTAAAGATAAA GCC-GAT-CGCGTAAAACT TGTCG AGCTTTACGGGCATCTGGC TTGGTTAGCGATATC  68 79
CCO40_RS19345 4041203 .. 4041219 -  -3.8  -4.48221   TACGAAGGGACAAAA              GATTTA TTCCG TAAATC              CCCAGCGGCGTCCTT  66 261
CCO40_RS19315 4034493 .. 4034503 -  -4.6  -4.41633   CATGGCGAAAAAGAA                 CGGC GGC GCCA                 TCACCCTGACCGAAG  68 467
        rraB NONE
        miaE 4032355 .. 4032366 -    -3   -3.3517   ACTCAGGACAGAATA                TCAT GAAA ATGA                 CTTTTCCTGCTCGCC  46 120
CCO40_RS19285 4029333 .. 4029350 -  -7.7   -3.9712   CCAGCCGATGACAAA             GGTC-CGG TTT CCGTGACC             AAAATCATCGACGGC  71 422
CCO40_RS19265 NONE
        lptF NONE
        lptG 4022014 .. 4022050 -  -6.6  -2.90496   TGGCGGCGGAAAGGA    CTTATCCGGCCTAC GGGTCCGGA GTAGGCCTGAAAAG    CACAGCGCCATCAGG  56 57
        idnK 4016497 .. 4016514 -  -5.5  -4.14392   CCGGAAGCGTTAAAA             GCACTGG CGGG CCAGTTC              GATCTCATTATTAAC  65 377
CCO40_RS19220 4015480 .. 4015495 -  -6.8  -5.72616   ATGGACACAAAAAAA              GCCACC CTTA GGTAGC               TAATTATTGCATCAC 100 42
CCO40_RS19215 4015011 .. 4015025 -  -3.5  -3.82097   CTCAAACGTATTAAA               GAGGT TCGCC ACCCC               GCTTGTCCTCTCTGC  53 6
CCO40_RS19205 4013313 .. 4013331 -  -5.2  -4.72333   AACGATAGTTAAAAA             GTGAGCTG GGT CAACTCCC             CCACACTGAGTCGAT  73 449
CCO40_RS19200 NONE
CCO40_RS19195 4005351 .. 4005361 -  -3.2  -2.67713   TGACAACAGAAGGCA                 GCAT CAG ACGC                 TCTCCTTATCTTGTG  42 18
CCO40_RS19190 NONE
CCO40_RS19185 3996466 .. 3996477 -  -4.4  -2.78154   TCAGAGATTGAAGCA                TAGG GATA CCTA                 TAAATTATCATGTCT  47 447
CCO40_RS19175 3995880 .. 3995895 -    -9  -5.72622   TTTAGAAATAAAAAA              GACCTC AGTT GAGGTC               CATTTATATGCTCCT 100 174
CCO40_RS19170 3994340 .. 3994382 - -15.3  -2.74514   GCAAACCTCTAATTA TAAATTAAACAAATCTGTC TCTAT GGCAGATTTGTTTAATTTA TAAAGCTGTTATAAA  93 459
CCO40_RS19150 3989925 .. 3989976 -    -3  -4.08216   TCACTGGTGCGAAAA TCTGGATTATCCATGGCATTCAGC CTTC ACTGAATGCCACAGACAAGCGTTA TTTAACTAAAGCTCA  56 120
CCO40_RS19145 3988578 .. 3988597 -  -2.8  -5.47159   CCGCAACAGAAAAAA            TTACGCTA TGAA TAGCGCCA             CATTACTCTAATTCA  83 252
CCO40_RS19140 3987553 .. 3987583 -  -8.3  -5.55664   TCATCACTAAAAAAA       CAGACGGCAGAAC AAAAA ATTCCGACGTCTG       AACAAATTTAAATAA 100 79
CCO40_RS19135 3986801 .. 3986814 -  -3.1  -4.10925   ACAGACGCTGGAAAA               GCGACC CCT GGT-GC               AGTGTAAAATGTACG  58 182
        uxuR 3985130 .. 3985150 -  -8.9   -4.4773   CTACAGGAAGTAAAA            CGTGGACTG GGC CTGCCCACG            CTATTCCAGGTATAA  88 41
CCO40_RS19115 3982700 .. 3982721 -  -3.1  -3.92522   CGTCAAGGTCAGAAA           CACACTATCA ACT TGAT-GTGTA           TATAAAAAATGCCGT  55 208
CCO40_RS19110 3981490 .. 3981500 -  -3.2  -4.32034   TTATCACGATGAAAA                 CCTG CAA CAAG                 CGCCGTTTGATAACA  62 456
CCO40_RS19070 3972667 .. 3972691 - -11.3  -3.04589   AACGATAATTATAGA          GCGCGTTGCCC GGT GGGCACCGGGC          CTGCAACATTCAGAC  79 51
CCO40_RS19065 3971031 .. 3971043 -  -4.8  -4.84761   ATACCGGGATAAAAA                GCAC GGTTA GTGC                AACGTGGATAAATAA  77 148
CCO40_RS19055 3970691 .. 3970703 -  -3.5  -4.06785   ACATTGAGAAAAAGA                TTAAT GAT ATTAA                TATAAATGATATAAA  57 119
CCO40_RS19025 3961468 .. 3961486 -  -5.9  -2.81872   TTGACCAGAAGAGTA             GGCCGCA GAAGG CGCAGCC             GCTATCCGGCATGGG  50 153
CCO40_RS19020 NONE
CCO40_RS19015 3960741 .. 3960752 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG CAGC CGCC                 ATCCGGCATCTTCGG  63 42
         tsr 3955141 .. 3955154 -  -2.3  -4.07885   GATGCTGGTTTAAAA               TCGGC CTGC GCGGA                CTGCCAGGCCTGGTA  55 122
CCO40_RS18990 3952104 .. 3952130 - -10.8  -2.67662   ATAAAAGAGAGCAAG         CGGCGTGCCA GAAAAAG TGGCGCGCCG         AAAAAAGATGCGGGT  74 57
CCO40_RS18985 NONE
CCO40_RS18980 NONE
CCO40_RS18975 NONE
CCO40_RS18970 3949540 .. 3949551 -  -2.2  -4.17048   TCCCTCTTAAAATAA                CCCT ATCC AGGA                 ACCGAAAATTCCCAC  57 5
CCO40_RS18965 NONE
CCO40_RS18960 3947303 .. 3947350 -  -4.9  -4.00132   AAAGTTAAAAGAGAA TGTCATATATGCCGGGT--GGCG GCTG CGCCTTACCCGGCCTACACATCA TCTTTATCCATAAAC  61 104
CCO40_RS18925 NONE
        bglJ 3939191 .. 3939203 -  -6.9  -3.53012   CTGGTGGTCGCGAAA                GGCGA TGC CCGCC                TGGATAATAAGAAGC  60 339
CCO40_RS18900 3935910 .. 3935945 -  -4.1  -3.53811   TCGATGCGGCGCAAA   CGCTCATTC-G-CGGCGC AGT GCGCCATCTGAAC-AGCG   GCGGAGAGTTACGCA  51 477
CCO40_RS18885 NONE
        rimI NONE
        yjjG 3933444 .. 3933454 -  -6.8   -2.8805   ATCAGTGTTTACACA                 GGAG CTG CTCC                 AGTTCGCTTAATGAC  56 1
        prfC 3931719 .. 3931738 - -16.4  -3.33483   CAGGGAAAGTACGAA            GGCGCGGC GGAT GCCGCGCC             CGGAAAGGGATCAGT 100 36
        osmY 3930691 .. 3930717 - -14.5  -2.62184   GTGTGGTGCACATTA        CG-CCTCCCGAC AAAC GTCGGGAGGACG         AATTACGACGAATTA  87 38
CCO40_RS18860 3930391 .. 3930409 - -14.6  -4.28049   GCTAAAACCGTAAAA             GCCAGTCC GCT GGACTGGC             TTGATAGCAATATAT 100 56
CCO40_RS18855 NONE
CCO40_RS18850 3928341 .. 3928361 -  -2.4  -3.17723   CTATGGCGAAGCGAA            GGCCTGGC CAGGC GCGACGCC            GCAAGAGGTGGAACG  44 137
        deoC 3924921 .. 3924950 -  -2.2  -3.60884   GGGAAAAGAGTAGAA      GGC-TTACATCGCC GGAT GGCGGT-TAACGCC       TTATCCGGCCTACAG  49 91
        deoA 3923551 .. 3923561 -    -4  -3.23855   TGCTTCAAAAATAAT                 TGAT CAG ATCA                 GTATACAACTATTCA  48 34
        deoB NONE
        deoD 3921330 .. 3921362 - -12.1  -4.49556   TGCTGACGAAATAAA     CGATGAAGGGGGCC TGCTCT GGCCCCCTTCA-CA      ATCTTACTCTTTATC 100 29
        serB NONE
        radA 3911515 .. 3911527 -  -5.5  -3.30124   CCGTAGGCCGGATAA                GACGC ATT GCATC                GCCATCCGGCAAATT  56 66
        nadR 3910069 .. 3910113 -  -5.6  -4.42806   GTATTGCCAAATAAA TGTCTGAATGCCGGGT-GGCG CTTG CGCTTACCCGGCCTACAAACC CAGAGATTCCAATAC  70 97
        sltY NONE
        trpR 3905798 .. 3905848 -  -6.1  -3.33261   TTGTAAGCCTGATAA GCACAGC-GCCATCAGGC-ATTTCG CGG CGATGTTGCCGGATGGCCGCTTCGC CTTATCCGGCCTACG  59 47
        gpmB 3904276 .. 3904286 -    -4  -3.23692   GACGATGAGCAGGAA                 GTAT TCT ATAC                 CACCGCACTGCCGCA  47 296
        creA NONE
        creB NONE
        creC NONE
        creD 3899351 .. 3899371 -  -5.3  -4.46212   CGCGCTACTATAAAA            CCGCCGCCA CGG TAACGGCCG            GGCAAGCGAATGCCA  70 127
CCO40_RS18675 3890796 .. 3890808 -  -3.4  -3.73968   AAATTTGTGATGAAA                GCTA GCATT TAGC                TACGATGATTTCATC  53 122
CCO40_RS18670 NONE
        thrL 3889493 .. 3889515 -   -12  -5.75342   CTGGTCGAAAAAAAA           GCCCGCAC TGTTCAG GTGCGGGC           TTTTTTCTGTGTTTC 100 41
        thrA NONE
        thrB NONE
        thrC 3884573 .. 3884588 -  -3.2  -4.21194   TTTTATTATTGAAAA              CCGCTT AACG AAGCCG               GAACAGCTTACCGCG  58 212
         tal 3881185 .. 3881195 -  -5.4  -2.68487   TTAATGATTACAGCA                 GATC GCC GATC                 ATTTTTTCCAGTTTT  50 7
         mog 3880382 .. 3880402 -  -3.9   -2.5934   TGCTAAACGAGCAAT            TTGGCCGCA CTA TTCTGCCAA            TCGGCGAGGCGCACT  44 99
        dnaK 3876230 .. 3876256 -   -18   -2.9518   CTTAACATGCATACA         CGGGCGGAGAGG AAA CCTCTTCGCCCG         TGCCAGTAATTACCC 100 54
        dnaJ 3875014 .. 3875033 - -11.4  -5.29782   TACAGGCAGAAAAAA            GCCCGGAT ATAC ACCCGGGC             TGAAGAAAAATACAA 100 52
CCO40_RS18600 3873721 .. 3873733 -  -4.9   -3.6106   TTTAACACTCCGAAA                TCATT ATA AATGA                ATAATTAACACAAGG  57 124
CCO40_RS18595 3873327 .. 3873342 -    -9  -4.16146   AAAAGACGCGTAAAA              GGCTCA CGGA TGAGCC               TGATACTGCAAATGA  82 44
CCO40_RS18580 3869769 .. 3869786 - -14.1  -4.36914   CCCTGGTGGAGAAAA             GCCCCGG TAAA CCGGGGC              TTGAATCATGAAGCC 100 66
CCO40_RS18575 3866671 .. 3866700 - -11.6  -4.63218   GGGGGCGCAAGAAAA       GAGATTCGAAAG AGCGCG CCTTCGAATCTC        AAACTAATAGTCCAG 100 64
CCO40_RS18570 3865760 .. 3865770 -  -4.6  -3.15078   GATAGTGCATTAATA                 CGCC ACT GGCA                 GTTTTCCGAGCGCCG  50 9
CCO40_RS18565 3864769 .. 3864787 -  -5.3  -5.69473   CAGACGAGAAAAAAA             TCCCGAT AAGGA ATCAGGA             ATAAACCATGCTAAA 100 20
        bcfB NONE
        bcfC NONE
CCO40_RS18550 NONE
CCO40_RS18545 NONE
CCO40_RS18540 NONE
        bcfG 3858550 .. 3858569 - -11.4  -3.68261   CGATAAGATCGGAAA            GCCTCCCG CTAT CGGGAGAC             GCCTGAAAAATAGGT  87 40
CCO40_RS18530 NONE
CCO40_RS18525 3857312 .. 3857333 -  -4.3  -2.63479   AATATCCTCACACGA           CACTGACGG GACA CCATCTGCG            GTCTGCTACGCGGTT  46 40
CCO40_RS18515 3855610 .. 3855620 -  -5.4  -4.82855   CACGAAAGGTAAAAA                 TGTC AAA GACA                 TTAAAGGGCTGTAAA  76 244
CCO40_RS18505 NONE
CCO40_RS18500 3852529 .. 3852558 - -15.1   -4.6313   CCTAAAATAAAAGAA       CCTGACTCAGCAC GAGG GCGCTGAATCAGG        CGGGCAGAGCCCTAA 100 72
CCO40_RS18495 NONE
CCO40_RS18490 NONE
CCO40_RS18485 3849457 .. 3849474 -  -9.1  -3.56704   TTTTTACGAAATGAA             GTCCGAC TTAC GCCGGAC              CTTTTTAGTGCAGTC  73 209
        nhaA 3848147 .. 3848158 -  -5.8  -2.53213   CAATGTCGCAAGGGA                GCGA TACA TCGC                 TCCCCCTTTCCTTCG  49 47
        nhaR 3847170 .. 3847200 - -18.4  -2.83747   GAACTTGTAGAATGA       TTCCGGCTGCGG GCTAGTT CCGCAGCCGGAA       GTATTACGGTAGGTA 100 44
CCO40_RS18450 NONE
        ribF NONE
        ileS NONE
        lspA 3838239 .. 3838282 -  -5.3  -4.64157   TAAAGAACGATAAAA CCGTAG-GCCGGATAA-GGCG TTTT CACCGCCATCCGGCACCACGT TTGCCTGATGGCGCT  73 90
        fkpB NONE
        ispH 3836625 .. 3836643 -    -6  -5.33848   ATTACAACCAAAAAA             CCAGCA ACGATTG TGCTGG             TTTTTCAGATGAATA  91 172
CCO40_RS18420 NONE
        rihC 3834361 .. 3834392 -  -7.2  -4.40963   AGGCGTGAAAAATAA      CTTTCTCGAAGCGG AGAT CAGCTACGGGAAAG       TGGGCAGGCCGGAGA  79 85
        citC NONE
        citD NONE
        citE 3824680 .. 3824690 -  -4.6  -3.20227   CCTTAATCACGAATA                 CCGG AAG CCGA                 CAGCGCCACCACTTT  50 2
        citF NONE
        citX NONE
        citG 3821647 .. 3821670 - -12.6  -3.45743   TATCAGTAAAAGACA          TGATTCATCC CGCA GGATGAATCA           TTGCTGGAGAGAATG  93 54
        dapB 3820625 .. 3820643 - -11.8  -5.26119   GGGGCAAAAACAAAA             GGGCAATA ATA TATTGCCC             TTTGTAATCAATTAA 100 80
        carA NONE
        carB 3815367 .. 3815386 - -10.8  -5.80817   CGCAAGATAAAAAAA            GGGTTTCT TTAC AGAAACCC             TTTCAACATTATATT 100 79
        caiF 3814643 .. 3814668 -  -9.7  -4.64676   GCAGGTCGAAGAAAA         CCGACCGCGCCT GAA AGGCACGA-CGG         ACGTGAAGCCAAAAT  91 128
CCO40_RS18300 NONE
CCO40_RS18295 NONE
CCO40_RS18290 NONE
        fixX 3803586 .. 3803644 - -14.4  -2.57931   TGTAGGCCGGATAAG GCGTTTCCGCCGCCATCCGGCATTGGCG CCA CATGATTGCCGGATGGCGACGCTACCGC ATCTTATCCGGCCAA  87 63
CCO40_RS18280 NONE
CCO40_RS18275 NONE
CCO40_RS18270 3801005 .. 3801019 -  -2.7  -3.38535   TGAAATAATAAGAGA               GCGCC AGCAA GGTGC               CATGTTACGTCACAA  46 186
CCO40_RS18260 3797714 .. 3797752 - -13.8  -3.02745   CCGACGCATAAATTA   GCCTAATGGGTCAGACAC TTA GAGCCTGGCCCAGTAGGC   GTAATTGTTGAAGCC  87 152
        kefF NONE
        kefC 3794749 .. 3794765 -  -2.3  -2.80195   ACTGATCATTAATTA              TTTCCTG ATA CAAAAAA              ATTGCCGCCACTATA  40 200
        folA 3794220 .. 3794258 - -13.3  -3.02263   ACATCTGGCTCAAGA  GTAG-GCCGGATAA-GGCG TTT CGCCGCCATCCGGCACTAC  AGCGTTAACGACGTT  86 30
        djlA 3786309 .. 3786338 -  -9.9  -2.57423   ACATTCATTAACGTA       GGCCGGATAAGGC GCTA GCCGCATCCGGCA        ATTCAATCACTTGAA  68 32
CCO40_RS18185 3778314 .. 3778325 -  -3.6  -4.40963   ACCTTTGAAAAACAA                GGCA TTGA CGCC                 GCTCAAATGCCCGGC  66 247
        araC 3773202 .. 3773214 -  -4.8  -3.15544   CGTCAGCGTGATGAA                GCAG GGATT CTGC                TTACCCCGTCCCCCT  52 108
CCO40_RS18160 3772382 .. 3772393 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG AAGC CGCC                 ATCCGGCAAAGGAAT  63 43
CCO40_RS18135 3766977 .. 3766999 - -16.4  -5.95539   GCCGAAATAAAAAAA           GCCAGCAGAT ATT ATCTGCTGGC           GGGTGATTTTAGGCT 100 87
        leuO 3760226 .. 3760262 - -16.2  -4.65838   GATATACGCTAAAAA    GCAGAATAAACCAGAA TTTGT TTCTGATTTATTCTGC    CCGGTTTTATCGCTT 100 32
        ilvI NONE
        ilvN 3757580 .. 3757605 -    -9  -5.75945   ATTTCGCAAAAAAAA         GCCCAACCGA TGATAT TGGGTTGGGC          GATAATTCCTGTTGG 100 149
         cra 3756059 .. 3756076 -  -3.4  -4.07885   CACCGCCGTTTAAAA             CGGACT CAATAT AATCCG              AGAAAAATATAAAGT  57 390
        mraZ NONE
        rsmH NONE
        ftsL NONE
        ftsI NONE
        murE NONE
        murF NONE
        mraY NONE
        murD NONE
        ftsW NONE
        murG 3744758 .. 3744780 -  -3.5  -3.87994   AGGCACCGCCACAAA          TTATGTCCGGG CAA CCCGG-C-TAA          CTTCACTGGCGACGC  55 3
        murC NONE
CCO40_RS18030 NONE
        ftsQ NONE
        ftsA NONE
        ftsZ 3738877 .. 3738898 -  -6.7  -3.09208   AAATTACCTATCCAA           CCGAAGTGTA CTA TACA-TTCGG           CGGGCCAGTTTAGCA  58 75
        lpxC 3737862 .. 3737905 - -10.3  -5.90981   GGATAGTAAAAAAAA CGACTGGCTCGCCTGGC CGGAGAGAGT GCCAGGTTAACCAGTCG AATTTTATACGACAG 100 50
        secM 3737108 .. 3737124 - -11.5  -2.79175   AATAAAGTCTCAAAT              GCCCCGC GCC GCGGAGC              TACAAATAAAGTAAA  77 55
        secA 3734256 .. 3734273 - -12.7  -5.28176   TGCATCCATAAAAAA             GGCGCAG TCGC CTGCGCC              TTTTTATCTGTGTTC 100 139
        mutT 3733462 .. 3733485 -  -5.2   -4.1891   GCCGCCGAAGAGAAA          CGAATCGCCA GCAG CGGCGATCAG           TCTGATAGCGACGAC  65 380
CCO40_RS17970 3730655 .. 3730678 - -14.6  -3.32963   AGCGGGATGGGATAA          GGCTGGCGCA CATT TACGCCAGCC           AGAATATTAGAGGCT 100 32
        ampD NONE
        ampE 3724990 .. 3725013 -  -9.6   -3.4252   TTGTAGGCAGCATAA          GCGTTAGCGCC ATC GGCAC-AACGC          TACACTAATGCCCCA  75 25
        pdhR 3719560 .. 3719572 -  -7.7  -2.55818   AACAACCGGAACGTA                CACGT AGT ACGTG                AGGATTGTGAGCACT  59 154
        aceE NONE
        aceF 3714808 .. 3714825 - -14.1  -5.88471   GATTATCAAAAAAAA             GCCGGCC GTCG GGCCGGC              TTTTTCATTACATCA 100 33
        lpdA 3713154 .. 3713169 - -10.4  -5.64274   CCATGCATAAAAAAA              GCGGCT GTAA AGCCGC               TTTTTTGTATCGGGT 100 64
CCO40_RS17900 3712298 .. 3712317 -  -4.9  -4.67234   AGCGAAGGCCAAAAA            GATGGCC TGTACT GGCCAAC             CAAAGCAGGCGACAT  71 343
        acnB 3707149 .. 3707163 -  -2.7  -4.25538   AATAATAAATAAGAA               GCGCC ATTCG GGCCC               GGAAATCCGGGCCCG  58 47
        yacL 3705217 .. 3705233 - -13.7  -5.24129   TTCTGCTATAAAAAA              GCCGGGA TAC TCCCGGC              TGGAATGTTTGGCGA 100 107
CCO40_RS17865 NONE
CCO40_RS17860 NONE
CCO40_RS17855 NONE
CCO40_RS17850 3700594 .. 3700612 -  -6.6  -3.54424   GCCCACTGCCGGAAA             CCGTGGTG GCG CACCTCGA             TAAGAGCCATATCTG  60 521
        cueO 3697067 .. 3697086 -   -15  -3.35358   CGAAATAACCATTAA            TGCCCGGC GTAT GCCGGGCA             TTGTGCCGGGTGGCG 100 76
         hpt 3693616 .. 3693628 -  -5.5  -4.56597   CGCTGTTGGGAAAAA                TGCCC GAA GAGCA                ACGTCTGGACGCGCT  73 324
CCO40_RS17810 3692166 .. 3692179 -  -3.1    -3.794   GGGCAACCCAGTAAA               GCTGCA TCA TGC-GC               GATCTCCTTGTTTTT  53 18
CCO40_RS17805 3691124 .. 3691143 -  -4.2  -3.59024   CGATAAATACGATAA            TACCATCG TTCC CGGCGGTA             GCGCCGAATTGCCGA  52 287
CCO40_RS17780 3685495 .. 3685508 -  -5.2  -2.62788   ATATATCATAACCGA               GGCG AAAAAA CGCC                GTCATTGTAGCAAAA  48 60
CCO40_RS17775 3684183 .. 3684199 -  -2.1  -4.10453   CAAAGCTGGTCAAAA              CAGGGAC GGA GGCCGTG              ACACCCGGTATTTTC  56 78
        hrpB 3667228 .. 3667250 -  -4.2  -3.28368   AGGCAACGTATAACA          CGTCACGAA TACTTC TTCGTG-CG           CCGCGTTGGGGCCGT  50 5
        mrcB 3664542 .. 3664555 -  -5.9  -2.90392   GACCGGGTAAGCACA               GCGCC ACCC GGCAC                TATTACCGTGATTAA  51 37
        fhuA 3662055 .. 3662076 - -13.7   -4.1466   AGCCAACTTGTAAAA           CGGGCACGG CAAG CCGTGCCCA            AAAAGAAATTAGAAA 100 34
        fhuC NONE
        fhuD NONE
        fhuB 3657849 .. 3657861 -  -3.5  -5.61596   ACTTCGATAAAAAAA                TAATA TTT TATTA                TCGAAGTTTTATAAT  95 459
        stfA 3656759 .. 3656787 - -16.1  -2.73364   TTTTTACTTTAAGCA        TTATCCTGCGGCA GAC TGCCGCAGGATGA        TATTTCACTTACAGA 100 34
CCO40_RS17655 NONE
        stfD NONE
CCO40_RS17645 NONE
        stfF NONE
CCO40_RS17635 NONE
        stfH 3650763 .. 3650787 -  -7.2  -3.82807   AGAAGATATCAATAA         CACCATCGACGC CGC GCGTCG--GGTG         TTTGCGAAACTGTAA  68 148
        clcA NONE
        erpA 3647469 .. 3647480 -  -5.8  -3.28712   CTGTCGGCCGGATAA                GACG CTCG CGTC                 GCCATCCGGCACAAC  56 50
         dgt NONE
        degP 3642055 .. 3642089 -  -5.1  -4.52589   GGGTTTCACAGAAAA    GTGTTG-CCCCCTTCCA TGG CGGAAGGGGGACAA-AG    GTGATTACTGCATCA  71 30
        cdaR 3640680 .. 3640697 -  -6.3  -3.31263   AGCCGATCTGGACAA             GCTTACC CGTA AGTAAGC              TGTGTGTTGCCGGAT  59 112
CCO40_RS17575 3638736 .. 3638754 -  -8.1  -4.21275   TTAAGCGAGTGAAAA            GCGGGGGC GGCA GCCCCC-C             TTTGCATTACGGTGA  76 32
        rpsB 3632796 .. 3632816 - -11.1  -4.89729   TATAAAAGTGAAAAA            GGGGGCC ATATACA GGCCCCC            TAACCAAACGTGATA 100 199
         tsf 3631850 .. 3631871 - -13.7  -4.61633   AGAGAGGCGCAAAAA           GAAGCCGCC CTCA GGCGGCTCC            TCAGGAAAATCAGGA 100 35
        pyrH 3630883 .. 3630901 -  -5.3  -4.11751   ACGAATCCTTGAAAA             CTAGTCT CAGTC AGACCAG             ACGGTCACACAATAC  63 135
         frr 3630200 .. 3630249 - -16.5  -5.16151   GAAACGGAATAAAAA GCAAAACGCCGCACAGGAGACCT GATA ATGTCTTCTGCGCGGCGCTTTGT ACACCACTCATCCGC 100 83
        ispC 3628848 .. 3628865 -  -8.4  -5.28176   TGTATCCACAAAAAA             GCCGTG TAAAAC CACGGC              TAACCTGACCGAAAA  95 130
        ispU NONE
        cdsA NONE
        rseP 3625661 .. 3625678 -  -2.7  -3.33696   GTTCTTCCTAACTAA             CTCTC TTACAACC GAGAG              AAATCATTGAAAAGT  46 13
        bamA 3623180 .. 3623193 -  -2.4  -3.24747   TCGCTACACTACCAA               TGCA TTCCTT TGCA                GTGAACAATCACCAG  44 34
         skp NONE
        lpxD 3621502 .. 3621535 - -13.1  -3.57992   AAGGCAATAATAACA     CGGCCTGCCGCAATC GTAT GAATGTGACAGGCCG      GAAAAGAATGGCAAC 100 55
        fabZ 3621005 .. 3621015 -  -4.6  -2.57136   TTATCAATCACGAAT                 CAGG CCT CCCG                 GCTACGAGCACACAT  46 14
        lpxA NONE
        lpxB NONE
        rnhB 3618474 .. 3618485 -  -5.8  -3.01243   TCGATACAAGAATCA                GGAC ATAA GTCC                 CAGAGCGCGTTTAAC  52 11
        dnaE NONE
        accA 3613949 .. 3613969 - -16.9  -5.52384   CCTCGACCAAAAAAA            GAGGCCGGA TTA TCCGGCCTC            TTGGGGAAAAATGAG 100 49
CCO40_RS17470 3612014 .. 3612040 - -15.2  -3.79849   TAAGCATAGTAACAA         TCCTGCCGATGC AAA GCACCGACAGGA         TTTATCTTATTACAA 100 35
        ldcC NONE
CCO40_RS17460 NONE
        tilS 3607651 .. 3607666 - -10.4  -4.18018   GTCGGTCAGGGAAAA              GGCAGC TTAT GCTGCC               GCGAACTTACTGGTG  86 392
CCO40_RS17440 NONE
        arfB NONE
        nlpE 3605581 .. 3605601 - -16.9  -3.74077   CGGCAGATATGTAAA            GGCCTCGCA CCC TGCGAGGCC            TTTTATTAGTGAGTG 100 31
        gmhB 3599032 .. 3599046 -  -6.4  -3.12351   CTCTTTCAGAGTCAA               CCCTGA ATT TCAGGA               TTTTTCTCTTCAACC  56 169
CCO40_RS17390 3597244 .. 3597257 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGTACGCTTCTT  40 46
CCO40_RS17385 3597083 .. 3597096 -  -5.3  -2.71745   CGTGGAATAACGAAG               CATAC ATCA GTATG                TGAGTTATTTCACAA  49 61
CCO40_RS17380 3596886 .. 3596919 -  -4.5  -4.49756   TTTTAAAGAGCAAAA     CTTCGCAGTGAACCC TTTC AGGTACACTCTGAAG      TATTTTTTCGTAAAC  69 51
CCO40_RS17375 NONE
         rrf 3593271 .. 3593288 -  -5.5  -3.28791   ATTTCTTTGTCACAA             CCCGGAT TTTC ATCCCGG              TTTACTGCAATTTGA  56 179
CCO40_RS17365 3593142 .. 3593163 - -15.9  -5.31519   ACATGCAAAGAAAAA           GCCCTGAGC TAAT GCTCAGGGC            TCTTAATAAGTGGCG 100 36
        dkgB 3592154 .. 3592171 -  -9.1  -3.97043   GCGAATATATAAGAA             CAGCCCC CGCA GGAGCTG              TGAAAGAGGGATAAA  79 60
CCO40_RS17350 3589892 .. 3589905 -  -3.8  -2.75481   CTGTAACGTCAACCA               GTCC TCAACC GGAC                TGGTTCTTCTGTTAT  45 111
CCO40_RS17345 3589013 .. 3589037 -  -7.7  -3.62607   TATGAGAAAAATAGA          GGGCAGCACCC GCA GAGGCCTGCCC          CACGGCAGACCTGAC  69 47
CCO40_RS17340 3588180 .. 3588200 - -11.1  -4.49644   ACGAAAAAGCCAAAA            GGCGCCG CTTCCCC CGGCGCC            TTTTAAATTGCTATA  93 36
CCO40_RS17325 3585001 .. 3585018 -  -3.3  -4.21989   CATAACTGGAAGAAA             CGCGGCT GGAA AACAGCG              GAAAAGAAACCTGTA  58 211
        dnaQ NONE
CCO40_RS17310 3583663 .. 3583687 -  -8.6  -5.94597   GAAGACGAAAAAAAA          CCGTATCCCT TTTAC AGTGATACGG          TTTTTTTTACTTCAC 100 73
        tssH NONE
        tssB NONE
        tssC NONE
CCO40_RS17260 NONE
CCO40_RS17255 3571014 .. 3571026 -  -4.9  -4.18762   AAGTTTTACTTAAAA                TAAAC CTG GTTTA                TCCTGATAATTTGCG  65 219
CCO40_RS17250 3570462 .. 3570487 - -17.7  -4.71463   AATCAAAACAATAAA         TCCGGCCAGAT ATAA ATCTGGCCGGA          AAAACAGCCGTTAAA 100 36
CCO40_RS17245 NONE
CCO40_RS17240 NONE
CCO40_RS17235 3568677 .. 3568701 - -10.7  -5.10656   ATCAAAACAATAAAA          CCAGCCAGACA TAA CATCTGGCCGG          GAAAACAGCCGTTAA 100 37
        tssJ NONE
        tssK NONE
        tssL NONE
CCO40_RS17215 3564555 .. 3564577 -  -4.9   -2.5474   TGGCAGCGATAACAT           TATCACAGG GTATA CCTGTCATA           CTTCAAGCTGCATGT  48 131
CCO40_RS17210 NONE
        tssM 3560152 .. 3560162 -  -2.4  -3.40403   GCCGGCGCATTACAA                 CGCC CTC GCCG                 GACAACTGAAGTTCT  45 9
CCO40_RS17200 NONE
CCO40_RS17195 NONE
CCO40_RS17190 3558370 .. 3558388 -    -3  -3.28712   GTTCTGCTGCCAGAA             CCAGCC TTGTCCT GGCAGG             TAACGTATGCCCGGT  46 57
CCO40_RS17185 NONE
CCO40_RS17180 3556990 .. 3557000 -  -6.8  -3.45324   CACCGTCAGGAAACA                 GTGC CCC GCAC                 TTTATAATGCAACCA  62 356
CCO40_RS17175 NONE
CCO40_RS17170 NONE
CCO40_RS17165 NONE
CCO40_RS17160 3549160 .. 3549199 - -11.7  -4.87665   CGCGAGGTATAAAAA  TAAAAGCCGGG-AATATC ACGGA GATATTTCCCGGCTTTTT  ATTATATAAATATAT 100 27
CCO40_RS17150 NONE
CCO40_RS17145 3546818 .. 3546849 -  -5.2  -5.03961   AATTAAATAACAAAA      GAGCCGGG-AAGA TTTAATT TCTTACCCGGCTT      TTTATTTAAACTACT  79 31
CCO40_RS22540 NONE
CCO40_RS17130 NONE
CCO40_RS17125 3545366 .. 3545405 - -19.6  -4.05629   ACTAAAGTTAAATAA  TAAAAAGCCGGGAAGATA TTAA TATCTTCCCGGCTTTTGA   ATTAATTGGAGAAAT 100 27
CCO40_RS17110 3543103 .. 3543146 -  -6.3  -5.24003   AAGAAAAATGAAAAA CT-TGATGTGTATTACGCCTT AAAC AAGGCGCAATACAC-TAATAG TTGTTTACTATTAAG  87 36
        safB NONE
CCO40_RS17100 NONE
CCO40_RS17095 3539029 .. 3539045 - -12.3  -2.66034   ACAAACCTTATACCA              GGGGCTT ATA AAGCCCC              GCTCACAAAAGAGTG  81 290
CCO40_RS17090 3537608 .. 3537622 -  -4.2  -4.20516   CGTTCACCTAACAAA               GTATCC CGT GGAAAC               AAGCAAAACATCGCC  62 485
CCO40_RS17080 3536225 .. 3536242 - -11.3  -3.65542   GGCATCGTCAAAAGA             CGACTGG CTGA CCAGTCG              CATATCTCGATGCCT  87 101
CCO40_RS17075 3535889 .. 3535903 -  -2.8  -5.07053   AAGCATTTCAAAAAA               TCACTA TGC TGGTGA               TGAACATACCGCTTA  76 105
        lpcA 3529932 .. 3529963 - -11.6  -2.87319   GGTAAGGGAGGAAAT      CCCCAGGAACATAG ATAA CTATGTGACTGGGG       TTTCTGAGCGCAACC  78 75
CCO40_RS17045 3528571 .. 3528583 -  -6.2  -3.55444   GGGTTAGGCCCGAAA                CGCC GTCAG GGCG                ATTTTAAAAGTCCGG  57 475
        dinB NONE
CCO40_RS17030 NONE
        prfH 3524908 .. 3524930 -   -12  -3.10173   AGAAAGCGCTAAAAT           GCCCGTCC CATTTCT GGACGGGC           TATCAATATGGAATA  81 143
         gpt 3522690 .. 3522714 - -17.1  -4.78572   TTGTAACCAATAAAA          CAGCGCCCGGC ATT GCCGGGCGCTC          TGAAAAGCTGCTGAT 100 40
        frsA 3521402 .. 3521414 -  -2.7  -3.17586   ATCAATCTATTAACA                CAATC TAT GATTA                ATCCAGTCGGTAATT  45 7
         crl 3520594 .. 3520608 -  -9.2  -2.75267   AAACCCGCAACATGA               CGCCAG TTT CCGGCG               GATTTGCCAATAAAA  60 354
        proB 3518459 .. 3518472 -  -3.1  -3.18264   TTCCTTATCGAGTAA               TCATG TCAT CACGA                TGAACAGCGACCGGG  46 1
        proA 3517113 .. 3517126 -  -5.3  -3.30619   AATCACGGGGTAGAA               GGTTA AAAC TAACC                GGGCGGTGCGTCAAT  54 85
CCO40_RS16985 3516491 .. 3516507 -  -7.9  -2.64416   GAGTGTGATTACAAT              CGGTGGC GTC GTCACCG              TGCCTGTGGCGGTCT  59 513
CCO40_RS16960 3514764 .. 3514790 - -11.2  -3.22884   GTAGTAAGTTATGAA         CTATATATTTAT TCA ATAAATATATAG         ACATTAATTTGACGA  81 142
CCO40_RS16955 3513309 .. 3513319 -  -3.2  -5.04325   TGGAAAGTATAAAAA                 CACA CTT CGTG                 TCTATAATCAGAAAC  74 33
        leuC NONE
        leuD NONE
CCO40_RS16940 NONE
CCO40_RS16935 NONE
CCO40_RS16930 3508310 .. 3508335 -  -6.9  -2.66912   ACGTAAGTCAGAGCA         TCTGGCGCCA CGACAGT TGGCGCC-GA         CTGATCACAGTACGC  55 30
CCO40_RS16920 3506997 .. 3507020 -   -14  -2.62613   TTTGATGGGAAATAT          TCAGGGATAC GATC GTATCCCTGA           GGCAAGCCAGACTCA  86 38
CCO40_RS16890 3499616 .. 3499626 -  -2.6  -3.90328   GACAATGGCGATAAA                 TATT ACA AATA                 TAATCAGTAACGTTC  54 29
CCO40_RS16880 NONE
CCO40_RS16875 NONE
CCO40_RS16870 3495656 .. 3495666 -  -3.2  -3.20573   GCATTTAGATTAAGA                 GCAC CTA ATGC                 GCTTATTACCAGTCA  46 338
CCO40_RS16865 NONE
CCO40_RS16860 NONE
CCO40_RS16855 3494013 .. 3494032 -    -5  -3.06839   TCATTAAATAATAAC            GCGTTC TTGCTTCT GAACGC             CGTCAAGGAACTATA  51 28
CCO40_RS16850 3493555 .. 3493588 - -18.1  -3.61103   CAAGGTTAGCCCAAA     TAGCGCCCGCGTCGC CAGT GCGGCGCGCGCGCTA      AACAGGCATATATTA 100 55
        golT NONE
        golS NONE
        golB 3484166 .. 3484180 -   -10  -2.81088   AAGCGACGTAACAAG               GTAGCG TTG CGCTAC               TTATTTGTTATCTTT  71 216
CCO40_RS16815 3482774 .. 3482800 -  -3.5  -4.10453   GAAAGGGCGTGAAAA         CGACGGGGGGA AGGCG TGCTCCCGGCG         ACAGTATGCGCCAGG  57 51
CCO40_RS16810 NONE
CCO40_RS16805 3477619 .. 3477647 - -10.2  -3.40299   TTAGCACAGGGAGAA        TGACCGCAACGC TCGCT GCGCGGCGGCCA        TTTTATATGGTCTAT  76 75
        ssaA 3477272 .. 3477290 -  -2.4  -4.06502   CAGGTTGAAACGAAA             CGGTTA TTTTCCC CAACCG             TAAAAACGTCGGGGA  55 54
CCO40_RS16795 NONE
        cydB 3474744 .. 3474771 -    -4  -2.78384   CGCTGGCGCACCATA        TCGCGACCATCC ATAC GACTCGCCGCGA         CCATTTTTTCACTTT  45 46
CCO40_RS22535 3474554 .. 3474567 -  -2.3  -3.34242   GAGAATAATTATCAA               CCGCT ATTG AGGGG                GGAGATAAGGCGAGC  45 15
CCO40_RS16780 3473401 .. 3473413 -  -2.6  -2.85726   AAAAATCACCCAAAG                CGGC AGAAA ACCG                GGTTAGCAGCGGATA  42 62
        foxA 3470953 .. 3470966 -  -5.9  -3.89346   CGCTTAGCGCAGAAA               CGCCC ACAT GGGCA                AGGTTAATGGCCTGG  63 255
        yahO 3469972 .. 3469996 - -12.2  -3.72374   TGCCAGGAATAAATA         TACCCGCC-GG AAAC CCAGGCGGGTA          TTTTTATGATGCAAC  93 45
        prpB 3467048 .. 3467083 -  -8.2  -3.53811   CGTAGGCGGGTTAAA    CGTAG-TGCCATCCGGC ATT GCCTGATGGCGGCTTCG    CCTTATCAGGCCTAC  67 44
        prpC 3465760 .. 3465773 -  -3.9  -3.55444   GGCGGATGTTCGAAA               TATGT GCGG ACATA                GGGTACAACTCCTGT  52 62
CCO40_RS16745 NONE
        prpE 3461937 .. 3461947 -  -8.2  -2.70932   CCCTTCCGTGAAGCA                 GCGG GCA CCGC                 GTTAAAAGGCGACCG  57 472
CCO40_RS16730 3457791 .. 3457814 - -15.4  -3.61715   CATTCCTTGCAATAA          TGCCCGTCAA GTCC TTGACGGGCA           TTTTTCAGTTTAAAT 100 69
        iprA 3456680 .. 3456700 -  -6.8  -3.38812   GCCCCTGTAATAATA            CGCTGGCA GCCAT TGGCAGCG            GTGGGGTCTATTCTA  58 474
        sbmA NONE
        yaiW 3452949 .. 3452962 -  -2.3  -4.08767   TTCACTCTCTCAAAA               TCGCT GTTC AGCGG                GAAGCATCGAGAAAC  56 334
CCO40_RS16700 3452164 .. 3452182 -  -5.3  -3.60151   CGGGGTAAATGACAA            GATCCGCG CGAT CGCG-ATC             CAGGCTTATCAGACG  55 285
CCO40_RS16690 NONE
CCO40_RS16685 3449118 .. 3449143 - -14.1  -3.03781   TTAATTTAAACCATA         TCGTAACGGCA GAAG CGCCGTTACGA          TGCACCGCTATTGGC  89 33
        iraP 3448485 .. 3448541 - -21.3  -2.82635   ACTGTTATTACCATA GCCGCTTCGTTTTTATTTTCTTCTG GGTAATA CAGAGCAAAATAAAAACGAAGCGGC TATGTTATTTCATAA 100 78
        psiF 3447885 .. 3447918 -  -3.9  -3.79747   GGAGGGAGTATGAAA     TTTCGGGTGAG TGTTTTTCAGGG CTCACCCGATA      GCACTACGCCGCTTT  55 29
        adrA 3446546 .. 3446561 -  -6.8  -3.61371   AAATGGTACTCGAAA              CCGGAA AGCA TCCCGG               CGAACTGAAAGATAT  60 182
CCO40_RS16660 3445135 .. 3445148 -  -8.1  -3.14132   GCGTTCCCCCAGGAA               CTGCG CATA CGCAG                GATTTGATATCAGCA  64 176
        aroL NONE
CCO40_RS16650 3444315 .. 3444331 -  -2.1  -2.64877   TGGAGATACAATTTA              GGGGTAC TCA GAATCCC              TTCCGAGTGGTTCAT  39 45
CCO40_RS16645 NONE
        ppnP 3442752 .. 3442779 -  -5.6  -5.00884   ATCCGCGCGAAAAAA        CAG-GATCTGGTC AGC GACGAGATCGCCG        TTCATATTGAAGCGG  82 314
         mak 3440841 .. 3440851 -  -8.2  -4.07687   ACTGCTGCTGCAAAA                 CGCC AAA GGCG                 GCGAACTGCTGGGCG  77 259
        phoB 3434432 .. 3434473 - -15.3  -3.85389   CCTCAAGAATGGAAA GCCTTCTCCGCCAG-AAACC TGT GTTCTACTGGCGGAAAAGGC ATTAAAAGCGGGTCG 100 27
        phoR 3433062 .. 3433083 - -13.1  -4.90525   TAACTGCAAAGAAAA           TAAGCCAGC ATCC GCTGGCTTA            TGGAAAGTTATACTT 100 52
        brnQ 3431338 .. 3431360 - -16.3  -5.64304   CAACACAATAAAAAA           CCACGGGGC GTTAA GCCCCGTGG           TGTACACATATGTCA 100 47
        proY 3429879 .. 3429931 -  -9.2  -2.66216   CTCCAGGAGGAGAAG CGGCTCCGC-TTATCCGGTCTACCG TTGC CTGCAGACCGGATAAGGCAGAGAAA AACGACTACGCCTGC  66 31
        malZ 3427905 .. 3427922 - -12.7  -4.42653   AGTGCATTGATAAAA             GGCTCGC GAAT GCGAGCC              TTTTTTATGCGTAAG 100 61
        queA 3425179 .. 3425205 -  -8.8  -2.73364   GTCCGACGTTAACGA         TTCGCTACGGAA TGA TTCCATAGCTAA         TAAATTCCCGAAGGC  64 155
         tgt 3424020 .. 3424036 -  -5.1  -3.54779   ATTAAAATTAATCAA              CGTTCAA AGG TGGAACG              GGTCGCCCCTGACGT  56 1
        yajC NONE
        secD NONE
        secF 3420756 .. 3420775 -   -10  -6.02914   GGTACATAAAAAAAA            TCCCGATC GCAT GACCGGGA             TTCAGATAACACTTA 100 50
CCO40_RS16550 NONE
CCO40_RS16545 3419547 .. 3419562 -  -3.2  -3.29461   CAACCCGTTTTACAA              GCGTTA GAGG TATCGC               TATCACATCTTACGG  48 35
        yajD 3418853 .. 3418872 -  -6.4  -6.20267   TTAAAAACAAAAAAA            TCCCAACC TTGC GATCGGGA             TTCCAGTGACAATGT 100 208
        nrdR NONE
        ribD NONE
        ribE NONE
        nusB 3413968 .. 3414010 -  -5.6  -5.61277   CAGAAAAAAAGAAAA GGCCGG--AGACGGCGGG TATCGATCG CCCGCTATCTTTCCGGCC TGTGAATCACTTTTT  93 32
        thiL NONE
        pgpA 3412436 .. 3412447 -  -7.2  -3.30771   GGATAGGCCGGATAA                GGCG TTTA CGCC                 GCCATCCGGCAAACC  63 43
        thiI 3406624 .. 3406636 -  -6.2  -2.94099   GCCGGGTAGGACATA                GCCG CCACC CGGC                AAAGGAATTACGGGC  55 33
        phnW NONE
CCO40_RS16435 3399760 .. 3399808 - -16.1  -3.53444   GGATGGCGGCGTAAA CACCTTATCCGGCCTACAAAACG GTA CAGTCTGTAGGCCGGATAAGCGG CAGCGCCATCCGGCA 100 47
CCO40_RS16420 3397498 .. 3397545 -  -5.5  -3.90112   CTGTTGGCAATGAAA GGCGTAAGCGAAGCGCTGATC GTGGCG GAAGAGCATTCCGCTTACGTC AAAATCGACAGCAAA  61 132
CCO40_RS16410 NONE
CCO40_RS16405 3392640 .. 3392660 - -11.1  -5.08824   TTGCTATTGAAAAAA            CCGCCGTGT CAC AAACGGCGG            TTTTTTTATCCATTT 100 65
        bolA 3384580 .. 3384593 -  -9.5  -5.23292   TCAGACAAAACAAAA               CGGCC CGCA GGCCG                TTTTCACATAATTCT 100 86
         tig 3382952 .. 3382973 - -11.6  -5.93809   GCGTGACAAAAAAAA           CCCGTCAC TGAAAG GTGACGGG            TTTTTGTGCAAATTT 100 61
        clpP NONE
        clpX 3380565 .. 3380583 -   -11   -4.3623   ACAGGAAAAACGAAA             GGGGAGAT AAA ATCCCCCC             TTTTTTGGCTAACTG  90 58
         lon 3378014 .. 3378043 -  -8.6  -5.72616   AGCTATACAAAAAAA       GGCTGGCAAGTCC GAAAT AG-CCTGCCAGCC       CTGTTTTTATTAGCG 100 58
        hupB 3377540 .. 3377559 -   -10  -5.45652   ATCGCCAATAAAAAA            GGCACATC AGTT GATGCGCC             CTTGTACTTTGTCAC 100 61
        ppiD 3375370 .. 3375385 - -11.8  -4.39571   CTCAGAAATGGAAAA              GGCCGC GAAA GCGGCC               TTTGTGGGATACAAC  95 73
CCO40_RS16330 3374851 .. 3374873 - -10.7  -3.00601   TAAACGACAAGTACA           GAGGTCATA ACTGG TATGACCTC           TACAGTCTGGCAAAT  76 61
        fadM 3374026 .. 3374052 -    -5  -3.54741   GATGAGTTCGTCAAA         GCGCTGAATCAC GCG GTGAATCTGGGC         ATGGCGAAAGATATC  55 380
         cof 3370886 .. 3370904 - -10.3   -6.0458   AGAAACCAAAAAAAA             GCCAGAC TGAAT GTCTGGC             TTGCTGGAAGAGATC 100 43
        decR NONE
CCO40_RS16295 NONE
CCO40_RS16290 3365608 .. 3365624 -  -6.5  -5.31519   ACAGGGAAAGAAAAA              CGCACCA CGA CGGTGCA              TGATGGGCGAGGTTT  87 60
        glnK NONE
        amtB 3363695 .. 3363713 -  -4.4  -5.33848   ATCACAATTAAAAAA             CATGCCGC TAT GCGGCGTT             AATGGCCTGATGACG  84 102
CCO40_RS16270 3362014 .. 3362034 - -16.9  -3.14132   CGCTGGGTGTATTAA            CCCTCTCCG TAA CGGAGAGGG            TTGGCGCAGGATTAA 100 37
         ffs 3361295 .. 3361305 -  -6.8  -2.64872   GCCAGGCAAGAACAG                 TGGC TAC GCCA                 GCATGGCGTACATTA  51 163
CCO40_RS16250 NONE
        ykgO 3359165 .. 3359188 - -10.3   -5.4505   GCCGGTAATAAAAAA          GTGCGCACC CTCCCT GGTACGCAC           TGCTTTCCCTGAACT 100 50
        acrR 3351538 .. 3351558 -  -4.8  -4.61868   TAGCGACACAGAAAA           TGTCCAGGA GTTT TCCTGGA-A            TATTATCAGGGGGAG  73 31
        mscK 3347898 .. 3347925 -  -9.8  -4.57341   AAGGGCCTGCAAAAA        GGCCTTGAGCAA GGGT TAGCACAAGGCC         GTGAGGCCGAAGCGC  91 183
CCO40_RS16185 NONE
         apt 3345117 .. 3345141 - -16.5  -3.09671   AGGGTAATGCTAACA          CAACCTCGCCG ATA CAGCGAGGTTG          TCTCTCTGGCTAAAA 100 62
        dnaX 3343117 .. 3343135 -  -9.6  -3.30124   CTTGATGGTTCACAA             TCGCAAGC CAG GCTTACGA             TCAAATGGGGCGGAT  74 26
CCO40_RS16170 3342768 .. 3342781 -  -2.3  -2.64099   GGTTTGCATCAGAAT               GGCAT CTTA AAGCC                TGGCGGCAGTTGCAT  39 5
        recR 3342064 .. 3342080 -  -3.7  -3.67558   GATAGACCTCAACAA              TGCCATT TTT AATGGTA              AAAATACGTTGAGGG  53 101
        htpG 3340072 .. 3340100 -  -5.2  -5.31877   AGGTATTATAAAAAA       TGCCGGAT-GGCG CTGG CGCTTATCCGGCC        TACAAACAGTACTCG  82 96
         adk 3339183 .. 3339214 -  -4.3  -3.30441   CAGTAGGCCGGATAA      GGCGTTCAG-GCCG CCATC CGGCACCGATTGCC      TGATGGCGTTACGCT  52 96
        hemH 3338085 .. 3338109 -  -4.2  -3.21416   TATGGCGAGGATGAA          GACGCCGC GTTAACGGT ACGGCGCC          GTGAGTTTCAGCATC  48 10
         gsk 3335309 .. 3335333 -  -7.8  -3.14211   ACCCGCGTGGATGAA          CTGCGCGAAC GCGGG ATTCGCGCCG          TACTGGGCAACGCCG  57 361
        ushA 3330336 .. 3330352 -  -5.8  -4.56597   TCTGGGCGCGAAAAA              GGTCGA TATGG CCGACC              CGATGGTGGCGCAAC  75 357
        cueR 3324928 .. 3324939 -  -5.8  -3.13522   ATGCGCTGACGAAGA                CCTG CGCG CAGG                 TACGCATGTCGAAGT  52 84
        fetA 3322810 .. 3322828 -    -3  -2.74523   GTATTGGTAATATTA             TGCTCGTT CAT AACGCGCC             TCCTGCATCTCTCCG  41 4
        fetB 3321618 .. 3321637 -  -3.6  -4.57341   AAGCGGTGTTAAAAA            CT-ATCCCG CTA CAGGATCAG            GATACCCGTTATCAG  69 429
CCO40_RS16060 NONE
CCO40_RS16055 3316391 .. 3316414 - -12.4  -3.41701   GCGACTAAAAAAGTA          CGCGCCGTTT TAAA AACCGGCGCG           AAATTATTCACATCA  90 45
CCO40_RS16050 3315068 .. 3315102 -  -2.1  -3.84451   TGGCGTAAAGGGAAA    TGCCGGATA-AGAGGT CTTA ACGCCAGCATCCGGCA     CAGGAAAACGCTTTA  51 38
CCO40_RS16045 NONE
        sfbB NONE
CCO40_RS16035 3312222 .. 3312245 -   -11  -5.27923   CAACTGGAGAAAAAA          GCCGCGAATA TCGT TTTTCGCGGC           CCATGGCAAGACGTT 100 103
        allA 3309446 .. 3309460 -  -7.2  -4.12254   TATGAGCATAAACAA               TGAACA ATA TGTTCA               TCTTATGCAAGAAGG  72 50
        allR 3308562 .. 3308581 - -13.6  -3.67443   AAAATTTTAAAAAAG            TCCCGCTC CAGC GAGCGGGA             TGCGGCTCAGGCTAC 100 32
         gcl NONE
         hyi NONE
        glxR 3304923 .. 3304948 - -11.9  -3.01712   TGTTCCTTGTGAACA         GGTATCGCTGC AGCC GCAGCGATACA          CATAATTAGGACAAT  81 31
CCO40_RS15995 NONE
CCO40_RS15990 NONE
        allB 3300615 .. 3300635 - -16.9  -3.83378   CCTTAAAATAGAGAA            TGCCCGTCG TGA CGACGGGCA            TTAAATCACACCGGA 100 41
CCO40_RS15980 NONE
        glxK 3297911 .. 3297921 -  -2.4   -3.8062   TAACCTCGACAACAA                 CTGG GTG CCGG                 TGAAAAAAGGCGACT  52 227
CCO40_RS15955 3292949 .. 3292963 -    -2   -3.6682   CGCCACTGATGTAAA               CATGGG AAC CCCTTA               TTGCAAACGTTCTAA  49 23
CCO40_RS15950 NONE
CCO40_RS15945 NONE
CCO40_RS15940 3289808 .. 3289831 -    -6  -4.07568   CGTCCGGGGCGAAAA          GTCGGCCA TCTGAATC TGACCGAC           AGCGATACGTCACGT  67 168
        cysS 3285426 .. 3285455 - -15.1  -6.28401   GAAAAAATAAAAAAA       CAGGCCGTTCTAT GCAA ATAGAGCGGCCTG        TAAAAGCGCTTACTT 100 35
        fimA NONE
        fimI NONE
        fimC NONE
CCO40_RS15870 NONE
        fimH NONE
        sfmF 3275604 .. 3275614 -  -5.4  -4.67607   TGTCTAACAAAGAAA                 TTGC CGA GCAA                 CTTTTATTGAGTAAC  73 185
CCO40_RS15835 3272099 .. 3272110 -    -3   -4.1523   TTGATTACATAGAAA                TGTT TTAT AACA                 GTAGACGCCGGCATG  56 266
CCO40_RS15805 3267749 .. 3267764 -    -4  -3.46141   ACGACTATGAAAAAG              CAATGG TCAT CCATTA               ATCGATGAATAATGC  52 190
        rclA 3264300 .. 3264316 -  -9.4  -5.83822   GACAGGCAAAAAAAA              GCCCTG ATTAA CAGGGC              TATATTATTTATGTT 100 41
        rclB NONE
        rclC 3263307 .. 3263336 - -14.3  -3.13867   TCATTCATCAACACA       TTGTCGGATGGCG CAAG CGCCACCCGACGA        ATCGCGGCATAAAGA  95 55
        pheP 3260355 .. 3260386 -   -16  -2.56596   TGCGGCATTAATGGA      TTGCCCGATCGCAT GAAC ATGGGATCGGGCAA       AAAAGTTAATGAGCC 100 31
CCO40_RS15750 3256828 .. 3256844 -  -2.2  -4.25104   GGCGTGTCATCAAAA              TCGGGC GCTAA ACCCAA              CGTTATAACGGGTTT  57 3
CCO40_RS15745 3253477 .. 3253499 -    -7   -3.1706   AATGCAGTGGATCAA           CTCCGCCA GCATACA TAGCGGAG           AGTATTTCCACGGAC  56 452
CCO40_RS15695 3246485 .. 3246520 -  -2.6  -4.56597   GCGCTGGCGCAAAAA    CTGGTCGGGATC TTTCATCTTATG GATCTCAACCAG     CTTTATACTTTGTTG  65 133
         fes 3240745 .. 3240763 -    -3  -3.13475   GAACTCCATACTCAA             CTCCTGTC ATG GACATGTG             CCCGGTTAAAGCGTG  45 31
CCO40_RS15665 NONE
        entF 3236573 .. 3236599 -   -14  -3.63768   AGTTGCAATAAAAAC         CCCATAATAATT AGT AATTATTATGGG         TTTCAGGATTTAATT 100 65
   wzz(fepE) 3235221 .. 3235240 - -12.2  -4.05389   CACACAGATGACAAA            GCCGGATA TCGC TATCCGGC             TTTTCGGGTAAATCA  93 38
        entS 3230742 .. 3230755 -  -2.3  -3.54424   CCCGAGGGCTGCAAA               CCAGC AAAA GCCAG                GGTAAGCGCCACGAT  47 328
        entC NONE
        entE NONE
CCO40_RS15615 NONE
        entA NONE
        entH 3224805 .. 3224816 -  -2.2  -2.58651   CAACATGATAAAACC                GGAT CGTT ACCC                 ATTTTTTACATTACA  39 102
        cstA 3222565 .. 3222589 - -12.9  -2.78798   ACCTGTCATCCAAAT          GCCCTCTCC TTATTCT GGAGAGGGC          TATTGATGTAAAAAG  85 42
CCO40_RS15595 3222034 .. 3222046 -  -3.4  -4.81249   CCGCAAACGGAAAAA                TTCC TGCAC GGAA                CGAAAGTGGCTTATG  70 324
CCO40_RS15585 3219872 .. 3219906 - -10.1  -3.24232   TGCGCCTGAAACAGA     TCAACGGCCTGCA GGAGCTTTT TGCAGACCGTCGA     TTCTCCAGAGCGTGG  74 53
        ahpC 3214819 .. 3214836 - -12.7  -4.05788   GGTGCTGAAATGAAA             TGGGCGC GGGT GCGCCCA              TGACTGAAACAATTT 100 162
        ahpF 3213006 .. 3213026 - -14.1  -5.63517   CGTTGAAATAAAAAA            CCGTCTGTT ATT AACAGACGG            TTTCAGAGTATTGAT 100 165
CCO40_RS15550 NONE
CCO40_RS15545 3209994 .. 3210006 -  -5.5    -3.445   CTATTCACTAAAAAC                GCACG TCT CATGC                TACGGATTCCCCTTT  57 20
CCO40_RS15540 NONE
CCO40_RS15535 3208633 .. 3208665 - -13.4  -2.83903   GCGGCTAAAAACTGA      CACGCCCTGCCAGG TCACG CCTGGCAGGGCTTT      TTACTGCATCATCGT  86 40
CCO40_RS15525 3206673 .. 3206692 - -12.2  -2.87881   TAATGCGTTTACACA            GAGGATGC CTGC GCATCCTC             TTTCCGTTAGCCCTT  80 56
        dpiB NONE
        dpiA 3195509 .. 3195530 -  -2.9  -3.57561   TTTGAAGTGGTGAAA           CGCACGTCCG TTC CGGTCAT-CG           TCGGTCTGTTGATCG  49 142
        pagP 3193106 .. 3193122 -  -7.3  -4.02302   TTTACATGAAAAATA              GACACAA ATG CTGTGTC              GGATACCAGTACAAC  72 171
        cspE 3192826 .. 3192842 - -10.8  -5.47399   TTAAGCGCAAAAAAA              CCCGCC GAAAG GGCGGG              TTTTGAAATCTTGCT 100 54
CCO40_RS15445 3191445 .. 3191464 -  -5.6  -4.72272   CTTCTTCACTAAAAA            CAGGCTGCG TAA CGC-GCCGG            ATTAACCTGAGAATA  74 113
        tatE 3191171 .. 3191185 -  -9.2  -5.81412   TTCAGGCAAAAAAAA               CCGGCA ACT CGCCGG               TTTTTTTACTCTGCG 100 60
        cobD 3178959 .. 3178972 -  -8.1  -3.04461   GACGCAGGCGCAACA               CCAGC AGTG GCTGG                AACAGCATCTGACCC  60 191
CCO40_RS15355 NONE
CCO40_RS15350 3172506 .. 3172527 - -10.1  -3.54653   ATTCCCAGGAGATAA           CCGGACAGC TTGT GCTGCCCGA            TTTGGTATCAGAACG  77 33
CCO40_RS15345 3171491 .. 3171506 - -11.8  -3.85698   CTGTTGGTTTATAAA              CGGGCG AGAC CGCCCG               TCGTGATTTATTTTC  93 51
CCO40_RS15340 NONE
CCO40_RS15335 3168934 .. 3168957 - -13.2  -3.04263   ACTGCACGCTTAACA          TG-GCGGACGG CAA CCGTCCGCTCA          CGATAATGAACCTTA  86 38
CCO40_RS15325 NONE
CCO40_RS15320 NONE
CCO40_RS15315 NONE
CCO40_RS15310 3163468 .. 3163482 - -12.8  -3.62275   ATTGACGAGCCGAAA               GCGCCG TAA CGGCGC               TTTCACTGCCCCTGT  95 41
        ubiF 3148313 .. 3148329 -  -2.2  -4.91511   ACTGCACCAGAAAAA              GGCG GTCATGCTA CGCC              AGAATAGTGCTGAAT  72 475
        nagE 3138718 .. 3138741 -   -11  -5.75342   TTGCGGTAAAAAAAA          GCGGC-GAAGG TTT CCCTCTGCCGC          TTATGTTTCCTGTGA 100 84
        glnS 3136863 .. 3136879 - -11.5  -5.38951   AATGCAGAGAAAAAA              CGCCGCA GAA CGCGGCG              TTGACAAGGTATTTT 100 68
        chiP 3135031 .. 3135057 -  -8.6  -3.01712   GGTCGTTCCTCAACA         GCGCGGCAGACC GGC AGCCTGCCGCAT         CTGACATCAGAAAAT  66 32
        chiQ 3134639 .. 3134665 - -13.7  -5.07107   TAAAGCCTGAAAAAA         CCACGGGCGGA AAACA TTCGCCCGTGG         GTGGCAAGGCAGGGT 100 42
        seqA NONE
         pgm 3124570 .. 3124585 - -10.4  -5.47159   CGTTAATACAAAAAA              GGAGCC GTAA GGCTCC               TTTTTCTTCCATATC 100 46
CCO40_RS15050 3111296 .. 3111310 - -11.4  -5.60993   TGGCGCATAAAAAAA               CCGCCA GCG TGGCGG               CTGACGGTTTTTCAG 100 52
        phrB 3109776 .. 3109799 - -13.9  -2.67747   TCCTGATAGCAGAAT          GCCCGGTAG TTTGCG CTACCGGGC           CTGTATCACGCCCCT  86 31
        ybgI NONE
        pxpB NONE
CCO40_RS15025 NONE
        pxpA 3104634 .. 3104656 -  -6.2  -4.19371   GAAAGGGGTAATAAA           GAGTCAGGTA GTT TACCCGCCCC           GGAGGTTTGATTAGA  70 260
CCO40_RS15015 NONE
CCO40_RS15010 3103528 .. 3103538 -  -2.6  -4.78661   ATTCAAAAAGTAAAA                 TAAA GGA TTTA                 ATTCTTTGATATGAT  68 297
CCO40_RS15000 3102277 .. 3102291 -  -7.2  -3.68351   GCGGCATGATGTAAA               TATGCT GTC AGCATA               AATCCGGTGCGTTAC  67 18
         glf NONE
CCO40_RS14990 NONE
CCO40_RS14985 NONE
CCO40_RS14980 NONE
CCO40_RS14975 NONE
CCO40_RS14970 NONE
CCO40_RS14965 NONE
CCO40_RS14960 3092283 .. 3092302 -  -5.7  -2.60079   CCAGGGCATAATCGA            CTCAGCCC TTGTC GGGC-GAG            CGCCCAATAATGATT  50 67
CCO40_RS14955 NONE
         nei 3091129 .. 3091143 -  -2.7  -2.77899   TCGCGGCAGGAAGCA               GTGCC GATAT GGCGC               TCATCATGGCAATGC  41 181
CCO40_RS14935 3088414 .. 3088424 -  -5.4  -4.95758   ACGACACCAGAAAAA                 GCAT ATA ATGC                 GTAAAAGTTATGGGG  78 33
        sdhC 3087642 .. 3087655 -  -3.1  -2.78384   GCGTTGCTTACCATA               CG-AGG ACT CCTGCG               AGAAGTGAAAGCACG  43 4
        sdhD NONE
        sdhA NONE
        sdhB 3084448 .. 3084468 - -14.1  -2.55351   GCCGTGGATACTAAC            CACGCATAC GCT GTATGCGTG            CCGGGGTTCACTTGT  87 351
        sucA NONE
        odhB 3080184 .. 3080200 -    -5  -2.66964   TCAGGCATTACACCA              TCGCCG GACGG CGGCGT              GAACGCCTTATCCGG  48 71
        sucC NONE
        sucD 3078001 .. 3078019 - -11.7  -5.33866   TAAAGCCATAAAAAA             GGCCACC GTAAA GGTGGCC             AACCATGTCGAAAAC 100 75
        cydA NONE
        cydB NONE
        cydX NONE
        ybgE 3073296 .. 3073321 -  -9.1  -4.82154   AAGGGAGAGTAAAAA         TATATGGGCTT ATGC AAGCCCCTATA          TTTTTAAGGAGGTTT  90 46
        ybgC NONE
        tolQ NONE
        tolR NONE
        tolA NONE
        tolB NONE
         pal 3068353 .. 3068364 -  -2.2  -2.52896   TGATGTCTGAAGTTA                CTGC TCAT GCAA                 TTCTCTTAGTAAACC  39 31
        cpoB 3067523 .. 3067570 - -14.3  -3.15579   TCAACTGCTTAGGAA TCGCACGACGCGACCAGAAAA AAGGCG TTTTCTGGTCGCATGGTACGC ATTACATCGCGTTAA  95 27
CCO40_RS14835 NONE
CCO40_RS14830 NONE
CCO40_RS14825 3066994 .. 3067006 -  -4.8  -2.76189   CAACTGAGCTAACGA                CCCA TACGG TGGG                ACTACCTGAAATATT  49 65
CCO40_RS14820 3066784 .. 3066798 -  -3.5  -2.76189   CAACTGAGCTAACGA               CCCCT TGGAT AAGGG               TTACTGCTTCAATCA  43 148
CCO40_RS14815 3066686 .. 3066700 -  -8.5  -5.24989   GCAGATAGCAAAAAA               GCGCC TTTAG GGCGC               TTTTTTACATTGGTG  95 36
CCO40_RS14810 3066531 .. 3066545 -  -8.5  -5.24989   GCAGATAGCAAAAAA               GCGCC TTTAG GGCGC               TTTTTTACATTGGTG  95 36
CCO40_RS14805 3066376 .. 3066390 -  -9.2  -4.84527   TGCAGATAGCAAAAA               GGCGCC GCC AGCGCC               CTCTTTTACATTGGT  90 37
        nadA NONE
        pnuC 3064261 .. 3064317 -  -3.9  -3.38786   CAGATGGAATATCAA GTG-TG-TCACGGCCCGGACTGTCATCTG AAT CAGACGCCA-TCCGGGC-ATGTTCATCAC CATTAACGGGAAAGC  50 28
        aroG 3061445 .. 3061472 - -15.7  -3.06315   TTAATATTGGCAATA        TCGGTCCGGTA GACTGT TACCGGACCGA         TATGTTTTCTATCCT  93 69
CCO40_RS14765 3058836 .. 3058847 -  -5.8  -3.63627   CCTGGATACCTCAAA                GCCT TGCC AGGC                 AAGATATAGAGGCTA  60 175
CCO40_RS14755 3056495 .. 3056505 -    -4  -3.77832   TCTCAAATTTAATAA                 TCTA AAA TAGA                 AAAGTAATATCAGGC  55 42
CCO40_RS14750 NONE
        oadA NONE
CCO40_RS14740 3053100 .. 3053113 -  -8.1  -3.09491   TACAGAGCCATGCAA               TCCGG TAGC CCGGA                CAGGTACTGGTTTAC  62 37
CCO40_RS14735 3052094 .. 3052111 - -11.3  -5.76633   CCATAGACAAAAAAA             GCGTGGA GCCA TCCACGC              TTGAGACTGCTGACA 100 188
CCO40_RS14730 3050808 .. 3050838 -  -4.7  -2.52834   GAGCGGAGCATTAAC      CCGCG-CATCAGAG ACTC CCCCGATGTCGCAA       TACAATGCTTAAAAA  46 2
CCO40_RS14725 3049974 .. 3050019 - -18.6  -3.29511   CGGATGGCGGTATAA CTGC-CTTATCCGGCCTAC GAGCAATGG GTAGGCCGGATAAGCGCAG CGCCATCAGGCAATA 100 45
CCO40_RS14680 3040775 .. 3040792 -  -9.8   -5.1356   CTTGAGTAACAAAAA             CGCCCG ACTGAG CGGGCG              TTTGGGGAAATCAGC  93 36
        modA NONE
        modB NONE
        modC 3037894 .. 3037908 -  -6.4  -3.95456   AAAGGCAACAGTAAA               GGCAAG CGC CTTACC               CAGTGGATAGAAGCG  65 230
         pgl 3036018 .. 3036046 - -17.4  -3.87815   GTTCAGGCTTATAAA        CGGGCCGCCGCA GCAGA TGTGGCGGCCCG        TGGTTTTACTGCAAG 100 114
        hutI NONE
        hutG 3032313 .. 3032327 -  -2.1   -3.3382   CGGATGACAGATTAA              CGC-CA CCAG TGCGCG               ATTTGCCAGCCAAGC  45 7
CCO40_RS14635 3031442 .. 3031459 -  -7.1  -3.08176   TAAGAATCAGACATA             TACTTGT CTAT ACAAGTA              AGCACAAGAATAGAA  60 105
        hutU NONE
        hutH 3028076 .. 3028107 -  -8.6  -3.53444   GGATGGCGGCGTAAA      CGTCTTACCCTGCC AACG GGTTGGGTAAGCCG       AATAAGCGCCGCGCC  71 53
        bioB NONE
        bioF NONE
        bioC NONE
        bioD 3022485 .. 3022504 - -12.2  -3.54488   TCTGGCGAAAGAACA            GCAGGATC GTCT GATCCTGC             AAGAAGGCGGTTTTT  88 49
        uvrB 3019814 .. 3019838 - -10.7  -4.17089   CTGAAATTCTCAAAA          GCGAGCCATGG TAA CGATGACTCGC          TGGCGATCGACACAT  88 43
        slrP 3017010 .. 3017037 - -13.6  -4.25104   CTGCGCTTATCAAAA        GCCTGTTTACACC GAA GG-GTAAACAGGC        TCTCTCCCCCTTCTG 100 56
        moaA 3014668 .. 3014682 -  -2.8  -2.76492   TGACTCATCTGAAAT               CTCCTT ATT AAGGAT               TAACCGCCAATGTAA  41 25
        moaB NONE
        moaC NONE
        moaD NONE
        moaE 3012941 .. 3012960 -    -5  -3.53091   ACTCCTGTGTGGAAA            TGATACCC TAAA GCGTATCA             CATTCTGCTACCAAC  56 33
CCO40_RS14550 3012178 .. 3012196 - -10.3  -5.42862   ATAGTCCTAAAAAAA             TCCTGGC GCAGG GCCAGGA             TTTTAAGAGATCGCT 100 45
CCO40_RS14545 NONE
CCO40_RS14540 NONE
CCO40_RS14535 3009807 .. 3009841 -  -8.6  -3.64703   CTGCCGTCATGGAAA     TTCGCGCTGGCG CAGATGGCGAT CTCCAGCGCGAA     CTGGATGGCGATGGG  68 347
CCO40_RS14515 3006257 .. 3006267 -  -2.4  -3.53091   ATTTTCGTTGGTAAA                 GCGG TGC CGGC                 GCTGATTGTCGCGAC  47 417
CCO40_RS14480 NONE
CCO40_RS14475 NONE
CCO40_RS14470 NONE
CCO40_RS14465 2995605 .. 2995629 - -14.9  -3.77906   AACGGAAACAGAGAA          GCGCCGCCGCA GAA CGCGGCGGCGA          AAGCAATTAACGTAG 100 32
        rhlE 2991344 .. 2991388 -   -10   -2.7185   ATGACGGTGCAAGCA CCTTATCGGGCCTACGTATT TGCAT AGTCCGTAGGCCCGGTAAGC GTCGCGCTACCGGGC  71 58
        dinG 2989073 .. 2989086 -  -9.5  -3.24747   TGCTCACAGCATTAA               CGCCG TCGG CGGCG                TGCAGGTTTTGCTTT  72 8
        ybiB 2987758 .. 2987793 -    -6  -4.41844   AAAACCTGCATAAAA    TCGGCGTAGTGTCTGCC GAT GGC-GCCACCACGCTGG    ATGGCCTGGAAGCTA  73 297
        rlmF 2985457 .. 2985470 -  -2.3  -4.11692   TATTCAGTTTGAAAA               CGGGA TGAA TACCG                GCGACTTAGTCACCA  56 522
        ompX 2978280 .. 2978297 -  -9.1  -6.11644   TCAGGCAAAAAAAAA             TCCGCCC CGAA AGGCGGA              TTTTTCATTTTCACC 100 48
        mntR NONE
CCO40_RS14375 2974268 .. 2974291 -  -7.4  -4.15106   GATGAACCGGTAAAA          GCCACCA-CCG AGC CGGACGGTAGC          CGTTACATTGAGGTG  74 249
CCO40_RS14365 2971717 .. 2971728 -  -7.2  -3.81488   GCCCGGTAAACACAA                CGCC ACCG GGCG                 TCAGTGTTTAGCTTT  68 33
CCO40_RS14355 2969258 .. 2969271 -  -8.1  -3.04144   GCGCTACGTTTAACA               GGCCT ACGC AGGCC                TGTTAATCAGAAGGG  62 32
        iaaA NONE
        gsiA 2960580 .. 2960591 -  -7.2  -3.36492   GTCTGAATGTTATAA                GCGC GAGA GCGC                 ATTATCCTGCAGCGG  63 8
        gsiB NONE
        gsiC NONE
        gsiD 2956664 .. 2956675 -  -5.8  -3.54424   CTCGACTTCCTGAAA                GAGG CGCG CCTC                 GATCGTGTAGGCTGC  57 458
        bssR 2954687 .. 2954717 -  -7.6  -2.87683   ACAGGCTGGCATATA       GGAGAGCATGAC AACCCGG GTCATTCCCTCC       GTGATTTTTTAGTAA  59 386
CCO40_RS14295 NONE
CCO40_RS14290 NONE
CCO40_RS14285 NONE
CCO40_RS14280 NONE
CCO40_RS14275 2950294 .. 2950306 -  -4.9  -4.59212   AACCAATGAAATAAA                TATCA TAG TGATA                AAACAGATGAAATGG  73 376
CCO40_RS14270 2948335 .. 2948358 -  -6.1  -4.41047   ATGGTTGAAGCAAAA          GTG-GGCATT GGTAT AATGCCTCAC          TCTGCTGCATCCCGT  73 190
        dacC 2943787 .. 2943824 - -16.3  -2.50816   CTCTGATGTATTAAC   CGCCCGTAGCCGGATGCG ACG CGCACCCGGCAACGGA-G   TTATTTTACGAGAAC 100 31
CCO40_RS14225 2940302 .. 2940312 -  -8.2  -4.10161   GACGATGCGTTAAAA                 GCCG TTG CGGC                 AATGTATTATCATCG  77 515
CCO40_RS14210 2937559 .. 2937583 -  -2.1  -2.91276   GGTCGGCGGACAAAT         GCTGATCGCC GGACTT GTCG-TCAGC          CTGGTACCGGTGGTG  40 439
CCO40_RS14200 2935109 .. 2935121 -  -5.5  -3.56704   GGGTTATCAAAGGAA                CAGGC GTA ACCTG                CTTTTCATCTGCCGT  57 391
CCO40_RS14190 NONE
        nfsA 2933996 .. 2934016 -  -7.5  -4.19276   TGAAAACCCTGAAAA            GCCCGCGTA TCA TACACTGGC            CCGCAGGTTTTAGCG  74 35
        rimK NONE
CCO40_RS14175 2932445 .. 2932485 -  -3.4  -5.67967   AGCAGCATAAAAAAA CG-TAAACAG-CAGCCGC GCTGGCA GCGACTGCCTGATTATCG GAAGGGATTAGTGAA  95 33
        potF NONE
        potG NONE
        potH NONE
        potI 2927955 .. 2927973 - -11.7  -3.08032   CTTCCCTGAAAATGA             TGCCGCG ACCCG CGCGGCA             ACGCATTACCATAGT  81 58
CCO40_RS14150 NONE
        rlmC 2926189 .. 2926225 - -12.5  -3.68738   TAGGGTAATATATAA    CCATGATCGATCG GAGTTTTTTAT CGATCGATCATGG    TTATTATTATTTATG  95 89
CCO40_RS14140 NONE
CCO40_RS14135 NONE
CCO40_RS14130 2922724 .. 2922741 -  -9.1  -3.58343   GTCATCAGTCTCAAA             CGCCTGC ATCA ACAGGCG              ATTCGGACTAATACT  75 88
CCO40_RS14095 2917547 .. 2917562 -  -3.2  -2.65264   CCACCAGCCACAGTA              GCGC TCTCATCG GCGC               GTTTTCACCGCCGTT  42 16
CCO40_RS14090 2916626 .. 2916670 -  -5.6  -3.48924   TTACGCTCGATACAA CTCGCGCGCAGGACGAGCTGG GCTA CCAGCCCATCGT-CACGCTGG ATGAAGGCATTGAGC  55 81
CCO40_RS14050 2905654 .. 2905673 -  -4.2  -5.14965   ATCGCCAGTAAAAAA            CGG-GCCGA GTA TCGCCGCCG            CTATGCATTACTCGA  85 77
        macA NONE
        macB 2901478 .. 2901498 - -12.6  -4.21462   ATCCAGGAGGCAAAA            TGCCAGCC CGATC GGCTGGCA            TTTTTATTTAACGCC 100 98
CCO40_RS14025 NONE
        clpS NONE
        clpA 2898228 .. 2898245 -  -9.8  -5.40072   TCCGGCGTAAAAAAA             CCGGGC GCTAAG GCCCGG              TTTGTACGACAGTGA 100 49
CCO40_RS13985 2893833 .. 2893849 -  -7.9  -4.36914   GGCGGCTGGATAAAA              GGTCGGT TTA ACCGGCC              TTTTTTGCGTCCATT  79 63
         lrp 2886820 .. 2886849 - -16.5  -2.75577   CGATGCTAAAACGGA       CAACAGCACCGGG TTGC CCCGGCACTGTTG        CTGTATGGATTAACA 100 82
        ftsK 2882699 .. 2882713 -  -3.4  -4.18494   CAGGTTTACTCAAAA               GGCGGC GGA GCCAGC               ACTTCACGATTACCG  60 1
        lolA 2881907 .. 2881928 -  -2.3  -3.55254   TATTATCAGAAAAAT           CGAGCGA-CA GAT TGCTCACTCA           TCGCCTCTACTTACG  47 32
        rarA 2880397 .. 2880413 -  -9.5  -3.18582   GATTGTATTGATGAA              CGTAAAC CGC GTTTACG              TAATAGCGACGTTTT  72 194
        serS 2878992 .. 2879005 -  -9.5  -5.61596   ACTGGCATAAAAAAA               GCGCC CGAA GGCGC                TTTTTAGAAGAGGAG 100 51
        dmsA NONE
        dmsB NONE
CCO40_RS13915 2874810 .. 2874848 - -17.5  -3.53811   TTGATGGTGGCTAAA   GGCGTATTCGGCCTGCA CGTTC TGCAGGCCGAATGCGCG   TCAACGCGTTAGCTG 100 34
CCO40_RS13910 2873319 .. 2873344 - -12.7  -3.95749   AAACATAAACAAAGA         GTATGCAAGAC TCAC GTCCTGCATAC          GATTCAGAGAACAGT 100 40
CCO40_RS13905 2871455 .. 2871476 - -11.6  -3.53444   TTACCCGCTTTTAAA           CGGCTACC CATGAC GGTAGCCG            TTTTGCTGTCTGGAT  85 269
       sopD2 2869055 .. 2869074 -  -4.9  -5.63504   AAGCGTACAAAAAAA            GGCTCCA TGTCAG TGGGGCC             TTTTTAATTTTTATA 100 36
CCO40_RS13875 2862683 .. 2862702 -    -5  -3.70863   CAGACATCAGGCAAA            CGTTATTC ATGT GAATATCG             GTTTTATCATTCAGT  57 142
        serC 2861507 .. 2861527 - -10.4  -5.48623   AAACAGAAATAAAAA            CCCCACAG ACTGG CCGTGGGG            ATGAAAAAAGAAACG 100 43
        aroA 2860081 .. 2860096 -  -3.3  -5.33785   AACTATTATAAAAAA              CACAT AAATCA ATGTG               TTAAATCATCAACAA  81 120
CCO40_RS13860 2859151 .. 2859171 -  -5.3  -3.75629   TACCGTTAACGTAAA            CGCCGCGCA TTA TACGCGCCA            ACGCTCGCGACCGTT  59 141
         cmk 2858384 .. 2858408 -  -7.2  -3.06696   GGGTTGTTTAACATA         CCCGCTGTCAA TCCT TTG-CAACGGG          GGTACTACAAATTCG  60 48
        rpsA 2856541 .. 2856558 - -14.1  -3.20382   CGTGAGATTGATTAA             GGGCGGC CGTA GCCGCCC              TTAGTGCTTGATTAC  95 111
        ihfB 2856159 .. 2856173 -  -7.1  -5.42514   GTATAAATGAAAAAA               GCACC CTGAC GGTGC               TTTTTTCGGGTTCAA  95 56
CCO40_RS13840 NONE
        msbA 2851938 .. 2851950 -  -6.3  -2.73619   AATCATTGGCCAAAT                TGCAT CTT ATGCA                GCTGGGCGTAAACGC  53 0
        lpxK 2850896 .. 2850935 -  -3.1  -2.78414   GGAAAGAGAAAGGTA CGGCAATGAC--ATTCATG ACTC CATAAATTCATCACTGCCG  CTGCATTGGGGGACG  43 41
CCO40_RS13825 NONE
        ycaR NONE
        kdsB 2848588 .. 2848601 -  -5.3  -4.45077   GAAAAATGAGGAAAA               TCGTA ACGG TACGA                GAAAGCTGCCACTAG  71 122
CCO40_RS13810 2847342 .. 2847374 -  -5.4  -3.98378   GATACGGAAGAAGAA      GCCGCCGCCGTTAA GCAGG CCATCGGCGACGCC      CCTTTCCTGTTGGTA  63 245
        cmoM NONE
        mukF NONE
        mukE NONE
        mukB 2839306 .. 2839321 - -11.8  -5.42975   TCAGATAAAGAAAAA              GGCGGC TTTC GCCGCC               CCAGGCTAATGATAA 100 137
        ldtD 2837198 .. 2837222 -  -4.3  -3.35679   CTCCCCCAGCCACAA         CGGGG-GTCT ACAGCG AAACGCCCCG          TTGAAGCCAAACATT  52 71
CCO40_RS13775 NONE
CCO40_RS13770 2835755 .. 2835771 - -12.3  -5.28176   GTGACCGATAAAAAA              GCCTGCA ATG TGCAGGC              TTTTTCATTCTGCTT 100 39
        dpaL 2828765 .. 2828776 -  -5.8  -4.61353   GACACACAAAAATAA                TGGG CCAC CCCA                 TAGAAATTCAAAGAG  74 306
        pepN 2823160 .. 2823188 - -13.2  -5.40072   CGTCCGGCAAAAAAA       TGCCCGGC-AGCG CTAA CGCTTACCGGGCA        TGTCTTACCTCTTTA 100 53
        pyrD 2821950 .. 2821979 -  -5.7  -4.84918   TGGAGAAATATAAAA       CAACCAGCGCC GGAAATAA AGCCCTGGTTG        TCTGATAAAGGGTAA  76 44
        zapC 2821039 .. 2821054 -  -6.8  -4.05033   GTTACGCCAGAGAAA              CACCCG GACG CGAGTG               TAACCATCGACTGGC  68 261
       rlmKL NONE
CCO40_RS13705 NONE
        pqiA NONE
        pqiB NONE
        pqiC 2812535 .. 2812561 - -12.3  -6.20267   TCAAAAATAAAAAAA         CCGCCTCAGGC GCACG ACCTGAAGCGG         TTAAATTTACATTAC 100 48
         rmf 2812121 .. 2812137 - -13.7  -3.74347   CCCATAAAGGCGAAA              CCTCCGC ACT GCGGAGG              TTTCTTTTTCTAAAG 100 49
        matP 2809024 .. 2809038 - -12.8  -5.24129   CCGTCTGATAAAAAA               CCCCGC GTC GCGGGG               TTTTTTGCTCTGGTC 100 63
CCO40_RS13655 2806095 .. 2806115 -  -7.5  -3.37959   CAACCTGAAGACGAA            CAGCGCGTA CAC CAGGCGCTG            GAGGGTTTAAAGCAG  61 174
        helD 2801447 .. 2801483 -    -2  -4.41616   AGCGCCTGAAATAAA    CGCTACGCGGGCGGGA TGCTG TACCGCCCGCGCTTTA    GGGCTTCCTCGCCAC  59 23
CCO40_RS13625 2799611 .. 2799632 - -10.1   -4.1899   TGATTGTATTTAAAA           GGCCGGAAA GCGA TATCCGGCC            ATTTAAACTTTTATT  85 36
CCO40_RS13610 2797219 .. 2797231 -  -3.4  -3.04144   TCCTGATGTCGAATA                TGCA TCTCC TGCA                CCGTGCCGTCCTCTG  45 43
CCO40_RS13605 NONE
        yccX 2796073 .. 2796086 -  -4.5  -3.51232   GGCCCGGCAAAGCAA               GCGAC CAAA ATCGC                CGGTCTGCCCAAGCC  52 53
CCO40_RS13585 2794511 .. 2794565 -  -7.9  -5.55855   CCTAAAAAAACAAAA GCGCCTAAAAAAACAAAGGGGCTACC TTTC GGTAACCCC-TTGTTTAATCTGGCGG AAGCGCAGAGATTCG 100 20
CCO40_RS13570 2791928 .. 2791956 -  -9.5  -2.71731   TTTACGTCTTAACTA        TGCCAGCGCCG TCACTAT CGGCGCTGACG        CAGACAATACTGCTT  64 157
CCO40_RS13555 2789107 .. 2789117 -  -2.4  -3.93038   CATTTGAACAGCAAA                 CAGC TAA GCAG                 CAGTATAAGATGGAG  54 440
        hiuH 2785062 .. 2785077 -  -3.2  -4.43911   AAATGGCAAGTAAAA              TAGCCC TAAT GGGATA               GGCTCTAAATTAGCT  62 35
        hpaG NONE
        hpaE 2778982 .. 2778999 -  -2.7  -3.83026   CTTGCCCATATCAAA             CT-CCCCA TTT TGGGATAG             GATGGTCGCCCATTG  52 3
        hpaD NONE
CCO40_RS13495 NONE
        hpaH NONE
        hpaI NONE
        hpaX NONE
        hpaA NONE
CCO40_RS13470 2772633 .. 2772655 - -17.8  -3.68359   TCGCCAAAAGCATAA           CGGGCTGACA TCA TGTCAGCCCG           TGGGTTTATCCCTGC 100 49
CCO40_RS13450 NONE
CCO40_RS13445 NONE
CCO40_RS13440 NONE
CCO40_RS13435 2766350 .. 2766383 -  -4.3  -3.83026   TTTTCTTACAGTAAA     CGCGTTAGCGCCGGG AAAC CCCGGCGCATATTCA      GAACGTTTTTGCCCA  58 23
         agp 2764976 .. 2765005 - -15.7  -3.34591   TAAAAACGTATAACA       CAAACGCCCCCGC CTGC GCGGGGGCATATG        GCTATTTTGCAGCAG 100 27
CCO40_RS13415 2763500 .. 2763517 - -14.1  -6.02919   TTATAAACAAAAAAA             CCGCCGG AAAT CCGGCGG              CGGTGGCGCATGACG 100 85
        rutR 2762306 .. 2762328 -  -9.8  -3.59979   TTCGCTGAGCGTAAA           CACTGCCGCC GCT GGCGGTAATG           CCAGCCTGATGACAA  77 499
        putP 2756392 .. 2756417 - -15.5  -2.66964   GGACTTATCAGAGGA         CCAGGCAGGCGT ATA ACGCC-GCCTGG         TAAAATATGTCCGAT  93 67
        phoH 2754739 .. 2754762 - -14.6  -3.58905   ACGCTTTATAGACAA          CAAAGCCCGG TCTC CCGGGCTCTG           AAAGTCAATGCTATA 100 41
CCO40_RS13370 NONE
CCO40_RS13365 2748563 .. 2748581 -  -4.6  -3.28416   GATTATCGATATGAA             TACTAAGC AAA GATTAGTA             CAGTAACTCTTTAAC  52 46
CCO40_RS13360 NONE
CCO40_RS13355 2745785 .. 2745804 -  -7.8  -3.71378   CATATTTAAGAAAGA            GCTCGTAC GAAT GTACGGGC             TTTTTTTTACATAAT  69 143
        ghrA 2744117 .. 2744132 - -11.8  -3.64703   CGTTTTTTAGCGAAA              CCCGGC CCGC GCCGGG               TTGATGTCAATATCC  89 32
CCO40_RS13330 NONE
CCO40_RS13325 NONE
CCO40_RS13320 2742131 .. 2742151 -   -14  -4.07455   GATCAATACGACAAA            GCGTGGGG AAGAA CCCCACGC            TTTTTTATTTTGTGA 100 30
        csgB 2738507 .. 2738521 -  -3.6  -4.11216   CTGCCACTTTTAAAA               GTTTCA TGG TAAAAC               CCCCATCGGATTGAT  57 59
        csgA 2738017 .. 2738032 - -10.4  -5.75342   CCTCCCGAAAAAAAA              CAGGGC TTAT GCCCTG               TTTTTTTATTAGCGC 100 51
        csgC 2737670 .. 2737680 -  -3.2  -4.77036   CGCCACCATCAAAAA                 CTAC TGT GCAG                 AAGGCGGCCATTGTT  69 15
CCO40_RS13280 2737213 .. 2737225 -  -3.3  -2.82015   TTTATATCTATGACA                CCGCC GTT AACGG                TACTCAATATTCATC  43 19
        ymdB NONE
CCO40_RS13270 2735136 .. 2735146 -  -4.6  -3.39534   GGTAAAACAAGAAAG                 CCGC GCC GCGA                 TCGGGTAGTTTTCCG  52 50
        mdoG NONE
        mdoH 2729609 .. 2729627 -   -11  -4.91511   ATTTCACTATAAAAA             TACCGGCA TCA CGCCGGTA             TTTTTCACCTCACTC 100 55
CCO40_RS13250 2729321 .. 2729333 -  -6.2  -2.52015   TTGATACCGAGGAAG                GCCG TACTG CGGC                AGACGAATGGGATGA  53 48
CCO40_RS13230 2724980 .. 2724993 -  -4.5  -3.55191   CGAACGTGACAAACA               CCTGCG TAG CGC-GG               AATTTCTTAATGTTG  52 370
        rimJ NONE
CCO40_RS13170 2716376 .. 2716389 -  -3.1  -2.62515   AATGTTCTCACATTA               CTC-CC CCA GGTGAG               CTAACAAAGAATCCA  42 9
CCO40_RS13165 2715207 .. 2715217 -  -3.2  -2.59881   CATCGACCGGATAAC                 GCAA CTT CTGC                 CGTATCCGGCTGTAT  42 256
        murJ 2713358 .. 2713370 -  -3.3   -5.1101   CGATTACCGAAAAAA                CGCAG CAT CTTCG                CGACCTCAACCAGCA  76 264
        flgB NONE
        flgC NONE
        flgD NONE
        flgE NONE
CCO40_RS13120 NONE
        flgG 2707521 .. 2707552 - -11.4  -3.09004   TCATCTTCAAAATCA      GGGAGCCGGTGGCG TATC CCCCACCGGCGGCC       CCTTAGAGTTGCGTC  79 28
        flgH NONE
CCO40_RS13105 NONE
        flgJ NONE
        flgK NONE
        flgL 2701977 .. 2702005 - -14.6  -5.55664   TGACGACTAAAAAAA        TGCCCGCGCC GGGGTGGAT GGCGCGGGCA        GACAAAACATATCCA 100 69
        rluC 2697024 .. 2697050 -  -2.8  -2.81535   TTATGAGAAAAGTGA         GATTCGGGCAGA TAA CCTGCCCGAGAG         AGGAACTATTTTGCG  41 31
CCO40_RS13075 2696046 .. 2696072 -    -3  -3.14344   TATTCTCGCGAGCAA         CTCTCAGGAC GTTTACT GTCCTGAAAC         CTTCCCCTTGCGACT  45 110
CCO40_RS13070 2695693 .. 2695703 -  -2.4  -4.15543   CAAATACCCCTAAAA                 GCCG TTT CTGC                 ACGTGTTGGTAGCTA  57 49
        yceD NONE
        rpmF 2694086 .. 2694097 -  -5.8  -2.62184   TCGGCTTTTACACCA                CAGG CACG CCTG                 TGATGCAAAAGGCAT  50 55
        plsX 2692877 .. 2692910 -  -2.9  -3.57263   ACCGTTACCTGTAAA     CGTCTGGCACGCTGGC GGC GCCGGGGAGACAG-CG     ATATTATCTGTGCGC  50 29
        fabH 2691895 .. 2691905 -  -2.4  -2.92669   ACTAGAAACGAATCA                 GCGC GGA GCCC                 CAGGTGAATCCACCC  41 1
        fabD NONE
        fabG 2690056 .. 2690069 -  -2.3  -4.25848   AATTTCCTATCAAAA               CTCGC TTTC GCGAT                GGTTTTCGTAGTGTA  57 145
        acpP 2689762 .. 2689788 - -13.1  -5.02287   GACAAAAAGATAAAA        CT-CAGGCGGTC GAAC GACCGCCTGGAG         ATGTTCACTTACGCC 100 34
        fabF 2688424 .. 2688440 -  -7.2  -5.24531   ATGCCTGATAAAAAA              GGCCCG ACAAG CGGACC              TTTTTATTAATGTCT  91 55
        pabC NONE
        yceG NONE
         tmk NONE
        holB NONE
CCO40_RS13000 2684052 .. 2684070 -  -8.2  -2.77899   TTTGCTTATTAATTA             CGAGCTTT AAA AAAACTCG             TTTAACGGATTGATG  60 27
        ptsG 2682300 .. 2682317 - -12.7  -5.14965   AGCGCCATTAAAAAA             GGCAGCC GAAT GGCTGCC              TTAATTCTCCCCAAC 100 52
        hinT NONE
CCO40_RS12980 NONE
        lpoB NONE
        thiK NONE
        nagZ NONE
        ycfP 2675893 .. 2675908 - -10.4  -5.67063   TTGAGCATAAAAAAA              CCAGCC GCAA GGCTGG               TTATCCGGTCACTGA 100 64
         ndh 2674349 .. 2674380 - -13.8  -3.42583   GCAAGAGATGGAGAA      GCG-CTCACCGGC GCGAGCA GCCGGTGAGGCGC      AGAGAAATTAATGCA 100 33
CCO40_RS12950 2673621 .. 2673647 - -10.1  -5.93809   TTCGGATAAAAAAAA         GCCCCTCAGCC TGAGC GAATGAGGGGC         TAACTTGCAGAGTAC 100 48
        bhsA 2672390 .. 2672411 - -15.9  -5.28176   CTGACCGACAAAAAA           GCCTCGCGA TGCA TCGCGAGGC            TTTCTCTTTTTATTG 100 75
        lolC NONE
        lolD 2665557 .. 2665580 -  -3.2  -3.83675   CAAGCCAATTAACAA          TGA-TAAAGGC GAC GCCATTACTCA          GCCCCCATCAGGCTC  53 19
        lolE NONE
        nagK NONE
        cobB 2662405 .. 2662424 -  -3.4  -4.11394   AGGCGAGTGGCAAAA            CGATGTCG GCGA CGCCAGCG             CCATTTATGAAGAGT  58 151
        pepT 2655488 .. 2655500 -  -3.3  -2.64218   ACGCTTCACCACAAT                GCGTA ACA TTCGC                TACTGGCCGCGCTTC  42 25
CCO40_RS12870 2654129 .. 2654157 -  -8.8  -2.71074   GAAGGATAAGAACAT       CGCAATGCCCGGC GACC GCCGGGC-TGACG        CAAACTATCCACAAC  64 30
         icd 2644467 .. 2644485 - -11.7  -5.27206   CATAGACAATAAAAA             CGGGGAC GTTAA GTCCCCG             TTTTTGTTTTTAACA 100 51
        tnpA 2643756 .. 2643776 - -12.5   -3.8457   TACTAATAATAAATA            TCCTCCGGC ATA GCCGGAGGT            TTTTCAGATGCGCCT 100 106
        sopF 2642163 .. 2642173 -  -6.8  -4.91194   ATAATAAATATAAAA                 GCAG TTA CTGC                 CTACCTCAAGAAGTA  82 91
CCO40_RS22490 2637520 .. 2637530 -  -3.2   -3.7108   ATTTTGATATTTAAA                 GAGA AAA CCTC                 ACAACCACATTAAGA  51 72
        pagC NONE
CCO40_RS12775 2636098 .. 2636110 -  -3.4  -4.20932   AATACTTATTCAAAA                CTGA AGTGG TCAG                TGGGAGTCGAACCCA  60 88
CCO40_RS12765 2633988 .. 2634004 -  -6.5  -3.38361   AAAGTTCAACATCAA              GGCAAGC ATT GCTTGTC              CACTGACTACATAGG  59 120
CCO40_RS12760 2633442 .. 2633473 -   -16  -2.87211   ACTTTTCGCTACAGA      CAATGAAGGCCCGT CTAA ACGGGCCTCCATTA       ATGCTTTTATGATTT 100 32
CCO40_RS12755 2631686 .. 2631696 -  -2.4  -3.76586   TCTTAAACACAAATA                 CCCG GAT CCGG                 TCATTACGCCTCCTC  50 427
CCO40_RS12740 2628692 .. 2628709 -  -2.7  -2.62111   GCCGCAAAAAATGAC             TGAAGAA CAAT TTCATCA              CCGACAGGTCCAGGT  40 23
CCO40_RS12735 2627738 .. 2627753 -  -5.4  -2.82516   CGGGGCAGGATTATA              GAGCAT CGGG ACGCTC               CAGCGATCGATTAAG  50 5
CCO40_RS12730 NONE
CCO40_RS12725 NONE
CCO40_RS12720 2625492 .. 2625513 - -15.9  -3.21276   TCTCTGCCGACAATA           CCGGGAACC CATG GGTTCCCGG            TGCGTTAACGGCGAC 100 68
CCO40_RS12710 NONE
CCO40_RS12705 2623696 .. 2623714 -  -4.4  -4.20368   TTATTTCAACAGAAA             CTCAGCGG CCA CCGCGCAG             GTGGCCTTTTTTGAT  64 47
        zinT 2622937 .. 2622956 -  -8.6  -5.63504   AACGGCAGAAAAAAA            GCTCACTA TTCA TAGCGAGC             TTTTAACATTGCAAT 100 46
        aadA 2621994 .. 2622016 -  -2.8  -3.21395   ATGGCCCGCATAAGA          TCATCTGCT TACTTC AGC-GATGA           GAACCTATTAAGTAG  45 89
CCO40_RS12690 NONE
CCO40_RS12685 2620379 .. 2620403 - -12.1  -3.93236   TATGAAGGGTATAAA          CAAGGGAGGGG TTA CTCCTCCCCTG          TTCGTTAATAATGCA  93 47
CCO40_RS12670 2619065 .. 2619079 -  -3.4  -3.14931   CTCATGGGGTATTAA               CGCGCG CGT CGCACC               AAAGATAGGGCTGCC  46 7
        leuE 2618197 .. 2618218 - -13.7  -2.60725   CGAAAGGAGAGCAAT           GACCCGCCG TTGA CGACGGGTC            CAGGTGGTTAAGACT  86 33
        yeaR NONE
CCO40_RS12655 2617429 .. 2617457 - -13.9  -4.74706   TTCAATACGCAAAAA        CCGCATCACGC TGGCGAC GCGCGATGCGG        CTTCTGATTTAAAAA 100 74
CCO40_RS12650 2616490 .. 2616522 -  -5.5  -3.14051   TTATCTTTATCAACA      CCGAGTAGTTGAGTT TAT AACCCACCTGTTCGG      TACGACATTGCTCAC  54 138
CCO40_RS12645 2616027 .. 2616051 - -11.6  -3.63694   ATTCATTTTGAATAA          TAAAGGCTAC CTGTC GTAGCCTTTA          TTATCTCTGAAAGTT  87 47
CCO40_RS12635 2615323 .. 2615341 -    -6  -2.57581   TTAACTGAAACATAT             TTTCTTGC GCC GCATGAAA             CTCATTATCAGATTG  53 73
CCO40_RS12630 2614916 .. 2614945 -  -5.7   -3.8646   CATCAAGAAGGCAAA       CGGCTGGCG GATATCGCCCGA CACCAGCCG        CTAACGTTGCTATAC  63 89
CCO40_RS12615 2612375 .. 2612407 -   -12  -3.60296   TACGCTGATGGGAAA     CCAACC-GCAGCTCG TCGC CGGGCTGCTGGTCGG      TACGGTACTTGGCGT  81 96
CCO40_RS12605 2611233 .. 2611252 -  -3.5   -3.1634   GCCGAAATGACTGAA            GTCGCGA AGGGTG TCGCTAC             ACACCAACGTTTAGT  47 512
CCO40_RS12590 2609044 .. 2609077 - -17.7  -2.85508   CAAAGTGCATAACCA     TAAATCAGCCCGTAA TGAG TCACGGGCTGATTTA      TCACTAACAAGGCAA 100 138
CCO40_RS12575 2604476 .. 2604492 - -10.1  -3.97947   TTCAGTTAGCACAAA              GCCTGCA TAA CGCAGGC              TTTGTCATGGTTTTT  82 58
CCO40_RS12570 2602979 .. 2602991 -  -3.3  -3.41798   CGGTAAAACAATACA                GGACT CTT AGACC                CTACGGTAATGTCCG  48 73
CCO40_RS12565 2602025 .. 2602071 -  -8.8   -2.7752   TATAGGATCTGAAAG GCGTCAGC--CGCCATCAGGCA TGACC TGCCGGATGGCGGCGCTTACAC ATTTTATCCGGCGTC  64 39
        msrB NONE
CCO40_RS12545 2598378 .. 2598398 -  -8.3   -2.7535   CCGGTCAATACATCA            CGCAACGGT GAG ACCATTGCA            TAGATCTTTGGGCCG  64 324
CCO40_RS12525 2593912 .. 2593956 -  -3.6  -2.71731   CTGATGTGGTAAGTA TCACTGTCTGAATTACCGCGC CTTT GCTCAG-AATCCAGACAGTTT TATCCCTCAGCGTCA  43 38
        selD NONE
        topB 2590591 .. 2590608 -  -9.8  -3.53012   TTTGCGCCGGGTAAA             GCCGCC AACGCG GGCGGC              GTGGCGACATCAGGG  71 271
CCO40_RS12505 2588645 .. 2588658 -  -3.1   -3.6692   CGCGACGGCAAAATA               CTGCTG GCC CAGC-G               CCCAGCTCATGCGGA  51 334
CCO40_RS12490 2586036 .. 2586055 -  -2.8  -2.62616   GCATGTTCGACAGGA            CGAATCAC CCGC ATGATGCG             CCTCCCGTCTGAAGG  40 10
        astA NONE
        astD NONE
        astB NONE
        astE 2581202 .. 2581232 -  -7.6  -2.92613   CTGTATCCCAAATCA       TCCCTGTAATCCTA ACG TGAGCTTACAGGGA       CATTTATCAGGGCAG  59 32
         spy 2580350 .. 2580398 - -11.7   -5.0065   CAGTCATAAAGAAAA CCGCCGATCCTGTCCACCTCA ACGATTG TGTTGTCGACAAGACCGGCGG TCTTAAATTATGCGG 100 45
        osmE 2577907 .. 2577922 -  -7.5  -5.64274   GCAGGCACAAAAAAA              CCGGC TCGCAG GCCGG               TTTCCTTGAATGTTC 100 57
        chbB 2577270 .. 2577288 - -11.8  -3.38603   AAATACCCTTAAATA             CCGCAATA AAA TATTGCGG             TTAGTGTATGAAATA  85 70
        chbC NONE
        chbA NONE
        chbR 2574576 .. 2574597 -  -2.2  -4.15044   CCCGCTCGTAAGAAA           TAGCGTGA TGTTCC CCGCGCTA            TTGGGGCAAGCGTGA  55 69
CCO40_RS12425 NONE
        chbG 2572358 .. 2572379 - -15.9   -5.4251   TCCATAGACAAAAAA           TGCGGCGCA TTCT TGCGCCGCA            AACTCAGGAGCTAAA 100 36
        tnpA 2571649 .. 2571669 - -12.5  -3.77071   AAACAGCAATAAATA            TCCTCCGGC ATA GCCGGAGGT            TTTTCAGATGCGCCT 100 106
        cedA 2568742 .. 2568762 -  -9.7  -4.72272   GTCTGTCACTAAAAA            CGCCGGT CTCCAGT ACCGGCG            TTTTGTTTTTTTCTT  91 39
CCO40_RS12385 2564642 .. 2564654 -  -6.3  -2.83903   CCGCGGAAAAAGGCA                TTACC TTT GGTAA                TATTGACGCCATTGT  50 426
CCO40_RS12365 2561649 .. 2561671 - -17.8  -3.69395   GTCACCACGGAATAA           CCGGGTTACG TAA CGTAACCCGG           CGCAATATTACATCT 100 33
CCO40_RS12355 NONE
CCO40_RS12350 2559309 .. 2559321 -  -6.3  -3.83998   TCACTCTATAGCAAA                TCAAG ACC CTTGA                CAGGGTTTCTCCGTT  64 68
CCO40_RS12345 2558667 .. 2558687 - -12.5  -2.76588   ACAATAAATAAGTTA            TACGGCGGC AAT GCCGCCGTT            TTATTTGGCTCTGAA  82 323
        thrS NONE
        infC 2554030 .. 2554055 - -14.1  -4.66987   CATAGGCGAACAAAA         CCTGTGAAGCC CGAA GGCTTCACAGA          ATTGTTACTTGAAGG 100 43
        rpmI 2553762 .. 2553776 -  -2.9  -4.87291   TATTCTAATTAAAAA               GTTAA AAACG TTAAC               GGCTTATGCGTACGG  68 29
        rplT 2553341 .. 2553363 -   -12  -4.99568   GAACAGTAAATAAAA           GAGAGGGAGC CAG GCTCCCTCTT           TTCACTGGCTTATGC 100 35
        pheM 2553143 .. 2553158 - -10.4  -5.76633   TCAGATACAAAAAAA              GCCTCC ATCA GGAGGC               TTTTTTGCGCTGTTT 100 50
        pheS NONE
        pheT NONE
        ihfA 2549246 .. 2549260 - -12.8  -5.64421   ACTTGAAAGAAAAAA               GGCCGC AAT GCGGCC               TTTTTAGTTATACGG 100 146
        btuC NONE
CCO40_RS12290 NONE
        btuD NONE
CCO40_RS12280 2546125 .. 2546140 - -10.4  -3.04144   GTTGTACTTTTAACA              GGGCGT GAGC ACGCCC               GTTTTTAATAAAAGT  73 150
        ydiV 2545166 .. 2545189 -  -3.1   -4.2679   CAACGGGCAGTAAAA          GACAGG-GTC ATAGG GCCTCCTGTC          TTCAGTGTAGACGGT  60 74
        selO 2543697 .. 2543736 -  -6.6  -3.91084   CTACTGTTAACCAAA TAACGCTG-CGCCAGCAG ACGATG CTACTGGCGTCAG-GCTA  ACTTGAACAACTGAC  68 23
        ppsA 2538561 .. 2538596 - -15.4  -3.86524   ACACTGCGGTATAAA    TTGCCGGATGGCGACG TTAA CGCCGCCATCCGGTAT     TACACTACTTCTTCA 100 30
CCO40_RS12220 2531481 .. 2531491 -  -6.8  -3.14564   GGAGCGTTTGATTAA                 TGCG GCG CGCA                 GTACAGGTTTCGCCG  54 508
CCO40_RS12170 NONE
        menI 2518643 .. 2518657 -  -5.6  -2.71261   ACAACGTCACACAAT               CGCCGT AGT AAGGCG               CGAAGAACAGCACAG  50 2
CCO40_RS12160 2518086 .. 2518116 - -12.7  -5.45802   CCCGGAAAAGAAAAA       CCCTTAAGTCTGT TCAAT ACAGGCTTAAGGG       TTCCGGCCCCATCCG 100 256
        sufA NONE
        sufB NONE
        sufC NONE
        sufD NONE
        sufS NONE
        sufE 2510689 .. 2510713 -  -9.3  -3.60952   GAACAACAAAATATA          CGCTCTGTCCA CTC TGGATAAAGCG          ACGTCGCCGTCCGAC  75 79
CCO40_RS12120 2509564 .. 2509582 - -14.6  -4.57755   ACGCACGATATAAAA             TGGCGCAC ATC GTGCGCCA             TTTTTTTGTCCGTCG 100 54
        ttrS NONE
        ttrR 2494520 .. 2494535 -  -4.8  -4.99947   CTCAATTAAACAAAA              TTTGAT GCAA ATCAAA               GAAATAACGCAGTTT  77 46
        fumD 2493917 .. 2493928 -  -4.4  -3.39216   GCTTCACGTAAAAAT                CACA CCAA TGTG                 CTGATGCATATCCAG  51 343
        spiC NONE
        spiA NONE
        ssaD NONE
        ssaE 2484840 .. 2484856 -  -2.9  -2.79878   CGTAGCGAGTCAAAC              CTCACGT ACT ACGTGTA              CGCTCCGGTTTTTGC  41 110
        sseA NONE
        sseB NONE
        sscA NONE
CCO40_RS11990 NONE
        sseD NONE
        sseE NONE
        sscB 2480291 .. 2480304 -  -3.9  -3.05384   TTGCCGCTGACGGAA               TATGA ATTT TCATA                TTTCGTTCTGTTATT  47 40
        sseF NONE
        sseG 2478813 .. 2478828 -  -3.2  -3.32516   AGAAAGCAATGAACA              TCCGGT ATAT ACCTGA               AAACGATTACTCCGG  48 32
        ssaG NONE
CCO40_RS11955 NONE
        ssaI NONE
        ssaJ NONE
CCO40_RS11940 NONE
        ssaK NONE
        ssaL 2475026 .. 2475048 -  -3.4    -2.882   CCTAAATATTGAAAG           CCAGGTATCA GAA TAAAACCTGA           TTTACCTTTACTTCA  44 10
        ssaM NONE
        ssaV NONE
        ssaN NONE
        ssaO NONE
        ssaP NONE
        ssaQ NONE
        ssaR NONE
        ssas NONE
        ssaT NONE
        ssaU 2466319 .. 2466333 -  -7.8  -3.21276   CGCTGCGCGATAATA               CGACGA TAG CCGTCG               CATGGCGGCTATTTT  64 481
CCO40_RS11860 2464047 .. 2464073 -   -13  -2.70932   GTTCCTCGCTAATCA         TCTCCCCCGCAT TTC ATGCGGGGGAAT         CTTATTTTCCGTTAG  85 37
        punR 2459907 .. 2459920 -  -3.7  -3.05844   CGCTGGAGCGCAACA               CCGGC GCGG GGCGG                CTGGCAGGCTTTATG  45 460
CCO40_RS11835 2458867 .. 2458903 -  -7.4  -2.57211   ATCTCGCCGCATAAG   TCTGAGTACGCAGAAGG TACG CCTTCTGCGTT-TTAGA    GAGGGATAGAATAGA  57 70
        grxD 2456620 .. 2456637 - -11.3   -5.0133   GATGGCGGTAAAAAA             GCGACCT TTAC AGGTCGC              TTTCTCCTTGCACAG 100 42
CCO40_RS11795 2453212 .. 2453224 -  -4.1   -2.5333   TGAACCATAACAGAT                TCCTC ATA GAGAA                TAATGAGGTTGAGTA  44 56
CCO40_RS11790 2452234 .. 2452290 -  -2.4  -3.22113   ATCGCTTCATAAAAC CTCCGTTACATGTGGTCGCCTGT TAAGTGTAAACC ACTGGCGAAAACATGTA-CGGAA AGTCAACGAGTTGGC  44 43
       sodC2 2451578 .. 2451594 -  -8.7  -2.95521   GCTACAGGAACTACA              GCGTATC TGC GACACGC              TCGCACATCATCATC  62 138
        slyA 2447915 .. 2447949 -  -9.3  -3.38046   TCTCCACGCTAAACA    GGCTTTACGTGTGGTC ACAT GGCCACACGT-ATGCC     CCTGCACCTCAATCG  71 34
        anmK 2446047 .. 2446060 -  -2.4  -3.33744   GGGTCCGGGAAAAAT               TCAG TTAACT CTGA                GTTATTGGGTTAGCC  45 16
        mliC 2445594 .. 2445628 -  -6.4  -4.11183   GTTGATCAGAAATAA    TCAGT-GGGTGGCGC TATTGT GCGCCCCCATACTGA     AAATCTCAACGCTTC  68 31
        pdxH 2444875 .. 2444888 -  -8.1  -2.57982   ACATAGCATAAAACG               GCGGA TTCA TCCGC                ACCAGTGCTTAAAAC  59 56
        tyrS 2443484 .. 2443503 - -12.2  -4.53398   GAACATCAAAAATAA            GGGAGTGA TTTC TCACTCCC             TGTTACTTAATGCCT 100 40
        pdxY 2442300 .. 2442317 -  -2.5  -3.83324   CCAGAAACACTCAAA             CCCGCCG TTCG CGCCGGT              CTGGAAAAGAAATTT  52 306
CCO40_RS11670 2430748 .. 2430760 -  -4.7  -4.60041   AGCGATGGCGAAAAA                CGTGC GCT GCGCG                AAAAAGTGGCCGCGG  71 120
CCO40_RS11650 2425113 .. 2425123 -  -2.4  -4.59773   GCTTAGCTGGAAAAA                 CGCC AAA GGGG                 AAACCACGCTGAATC  65 487
        fumB 2420866 .. 2420897 -  -9.4  -3.28785   CGGCAAAATAGCGAA      TCATGTTACCGCCC CGCA GGGCGGCGACATTA       CTTAACGCAGCGCGC  74 23
        fumC 2418975 .. 2418994 -    -7  -5.44119   GCCAGTTGAAAAAAA            GCCTCGCG TCGC CGCGCAGC             GTCCCGCCGTGGACG 100 355
CCO40_RS11600 2412169 .. 2412208 - -12.4  -3.28712   CTGGTGGGTTGACAA  CCTCCCCATCGTAATA TCCGTCTG TATTACGATGGGGAAA   CCACGGTCTTTGCCA  90 44
        pntA NONE
        pntB 2406051 .. 2406068 - -12.7  -4.87786   TGAAGTGTATAAAAA             CGGCCTC CGAA GAGGCCG              CCGCACGTTTAAAAG 100 42
        mdtJ NONE
        mdtI 2403728 .. 2403742 -  -7.8  -3.69354   CGCGATAAGCTGAAA               GCCCTG GCG CAGGAC               TAATACGCGAATCGC  69 63
CCO40_RS11550 2402020 .. 2402050 - -13.3  -4.43397   CCTGAAAAGAAATAA       TCCGGCGATAGCA ACGTG CGCTATCGCCGGG       CTGGTTTCACGCCAC 100 51
CCO40_RS11540 2399741 .. 2399751 -  -2.4  -3.37612   TTTAAGCGTAATTAA                 TCCC GTC GGGC                 AGCCAGTAATAGCAG  45 11
CCO40_RS11535 NONE
        bioD 2397498 .. 2397526 - -13.2  -2.73441   GATGATTTGTGAAAT        GACCGGCGAGTA TCAGT TACTCCCCGGTC        TGCTGATTGCCTGTG  79 67
CCO40_RS11470 2384002 .. 2384034 - -11.1  -3.73224   CCACCGCGCAGTAAA      CGCGGCGCGGCAGTC ACG GAGAGTCGCACCGCG      CCCGGTTTAGTAGTA  85 32
CCO40_RS11455 2382544 .. 2382576 -  -8.3  -4.67755   ATATTGATGTAAAAA      GCGCTGCCAGATCAC AAA ATGTTCTGGTCGCGC      GGCAATGTTACGTAC  89 33
        rspA NONE
CCO40_RS11445 2380182 .. 2380196 -  -4.2   -3.0644   AGGCAATCTCTAAGA               GGTAAG ATG CGTACC               ACTTACTCGCAATTA  47 47
CCO40_RS11440 2378727 .. 2378781 - -12.4  -4.99947   GCTAATTAAACAAAA GTGGCCGGACAGCATGGCCGAAACCGC ATTA GCG-TTCCGGCCATACCGTC-GAC-AC GATTTAACTCGTCTG 100 29
CCO40_RS11435 2377070 .. 2377104 -  -4.3  -3.75153   GGTTGTGAAGGTAAA    TTCGCGCCA-GTCGAA CTGA TTCGTCTTGGCATGAA     CTGATACTACTGGCC  58 96
         dcp 2372672 .. 2372691 -  -5.1  -3.34398   GTTGCGTTTTAAATA            TGATATG TCTTCT CATATCA             TGTGATACAGTTCTA  54 315
CCO40_RS11410 2372386 .. 2372404 - -12.4  -6.17268   TCAGAATAAAAAAAA             TGCGAGCC TAT GGCCCGCA             TCGTATGCGCAATAT 100 75
CCO40_RS11400 2370733 .. 2370750 - -10.5  -5.81412   GGCAGGCAAAAAAAA             CCGCCGG TTCA CCAGCGG              TAAATGCTTGCATGG 100 266
        eamA 2367557 .. 2367591 -  -2.3  -4.03234   GTGCCGCCACACAAA    TACCG-GA-TCACCA ATATGCA TGGCGAATCACGGTA    TATGCTGCCGCTGAA  54 419
CCO40_RS11365 2365819 .. 2365852 - -13.9  -3.13639   AACCGCATTAAGACA     TTCGTCTGCCGGGAA CAGG TTTCCGGCAGACGAC      AATGCGCCTTAGTGG  93 34
         sad 2362119 .. 2362137 -  -4.4  -2.66316   CCTGCGAGTATAGCA             GAGGGCGC CAC GCGACGTC             AGGGCGATTAGACGC  46 33
        glsB NONE
CCO40_RS11340 2360692 .. 2360705 -  -8.1  -3.54146   TGTTGTAACTAAATA               TGCGC TTCA GCGCA                TGAGATATATGACGG  67 107
CCO40_RS11335 2359449 .. 2359462 -  -2.3  -3.12327   TGGGCAGACTCAACA               CACGA CAGG CCGCG                AAAGCCAGGTGTGGG  42 179
        ompC 2357065 .. 2357081 - -10.1  -5.49234   ATAGTCAATAAAAAA              GGACGCC AGA AGCGTCC              TGAAATAATAAAAGA 100 127
CCO40_RS11275 2348241 .. 2348280 -  -5.1  -3.60035   GATAAAGAGAAGCAA  CCGCCGGTAGCCTC CATTACCTTCGCC GAGACTACCGG-GG  AAACTAAACCGAGAT  57 48
CCO40_RS11270 2347184 .. 2347197 -  -8.1  -4.07678   GGCCAAAACAGGAAA               CGTCG CTGC CGACG                AACCTGATCACCTAC  77 294
CCO40_RS11240 2339873 .. 2339884 -  -2.2  -4.57569   TTACCCTTTGAAAAA                CCAT TGAT ACGG                 CGATTGTTATATAGC  61 187
CCO40_RS11235 2338486 .. 2338498 -  -3.4  -4.59773   CCTGATTTTCAAAAA                CAAG TGAGG CTTG                CTTTTGAAAACCTGA  67 307
CCO40_RS11215 NONE
CCO40_RS11210 2336921 .. 2336944 -  -2.2  -2.98545   CCTTGACAATAATGA          CGGAGAGCGG AAAG CAGCCCCCAG           CGTGAATCAGTCATA  42 32
CCO40_RS11205 2335576 .. 2335587 -  -3.6   -3.5393   ACCACTGGTTTGAAA                GCCG GGGT CGAC                 CCTGTACTGCTTTGG  50 330
CCO40_RS11195 2333254 .. 2333268 -  -2.9  -3.95836   ATCTTTAAAACAGAA               TTACT GATAA AGTAA               CAATAGTCGGGTCGG  54 61
CCO40_RS11190 2332068 .. 2332090 -  -2.6  -4.11484   TTCAATGTCTGAAAA           CACTACCACA TCT TGTGTCAGAG           GGCCGCTGCGCGCCA  56 85
CCO40_RS11180 NONE
        nhaC NONE
CCO40_RS11170 2326255 .. 2326271 - -10.8  -3.05384   GCGCTCCGGACCCAA              CCGGCC TTGAT GGCCGG              TTTTTTTACTGGCGC  76 97
         bdm 2316838 .. 2316851 -  -6.7  -4.05714   AGTTTTAAGGACAAA               TTCGC TTAC GCGAA                AGAAACGTAACCCCT  70 68
         sra 2316608 .. 2316629 - -13.1  -5.38054   TCCTATAAACAAAAA           CACCATTGC AGAT GCAATGGTG            TTTAACGTCATTTCA 100 52
CCO40_RS11125 2314754 .. 2314779 - -11.1  -2.82317   TAAAGAAGAAAGTGA         TATCCGGCGGC ATTC ACCGCCGGGTA          CGTATTAAATGGAAG  74 30
        adhP 2313418 .. 2313443 - -13.4  -3.92522   TCGCAATCTGATAAA         CAAGGCGCTA TCCTGG TAGCGCCTTG          TTTTCATCTGCTGTC 100 70
        yddG 2307245 .. 2307261 -  -6.7  -2.80252   AGTTTCATAAGATTA              CAAATTA TTT TAATTTG              TGTGATCGAGATCTC  55 408
        ompD 2305987 .. 2306007 - -13.3  -5.13344   ACATCAAGAGAAAAA            GCCAGCCCT GAA AGGACTGGC            TTTGTATTCAGACTA 100 49
CCO40_RS11090 2305147 .. 2305163 -  -9.3  -4.82901   GCGCCGGCAGAAAAA              GCGGCGG CGG CCGGCGC              GATAGAAACGATGGC  93 369
CCO40_RS11080 2303136 .. 2303150 -  -7.1  -3.42405   CACAAAAAAGAGACA               GAGCG TCACG CGCTC               TTTTGAGAACTTATT  65 174
CCO40_RS11075 2301659 .. 2301672 -  -2.4  -3.53444   CGATTTGGCGTTAAA               CCAT TACCGG ATGG                CCGTCCTACAGGTGC  47 49
CCO40_RS11070 NONE
        narH NONE
        narW NONE
        narI 2294878 .. 2294909 - -12.2  -2.89421   TGAAGAATCATCATA      GCCTGTGCGTTGCC GAAT GACGACGCCCAGGC       GTTTTTCTTTGCCCG  80 67
CCO40_RS11050 2293501 .. 2293512 -  -7.2  -3.73968   AAATTGCCCAGCAAA                CGCC GCAT GGCG                 AATACCGTCTGATGC  65 465
        ansP 2290114 .. 2290137 - -14.6  -3.74747   GCAACGCGCATTAAA          CCCGGCAGGCC TGG GGC-TGCCGGG          GAAGGGGAATGTTAT 100 37
CCO40_RS11020 2286227 .. 2286253 - -15.2  -3.25015   TGCAACTATGACTAA         TCAATAGCGGGG ATT CCCCGCTATTGC         CGGATATTTATTCAA 100 33
        mddA NONE
CCO40_RS11000 2282704 .. 2282718 -  -4.2  -3.79113   ATCGGGCGACAATAA               CGCGTA TAA TAGGCG               AATCATGCTGTTACA  55 300
        srfA NONE
CCO40_RS10985 NONE
        srfC 2275820 .. 2275832 -  -3.3  -5.27335   TGCGTCAAATAAAAA                GAGCA TAT TGCGC                GCGTTTTTTCCTCTG  77 278
        yncL 2275505 .. 2275548 - -15.2  -4.15235   AATCGTGAAAAAATA GGCGGGTGTCGGCGGAGAGG GGGA CCTCCCCGCCAACATGCGCA GCAAGTACTCAAAGG 100 50
        sifB 2269071 .. 2269085 -  -5.7  -3.18094   AAAATAACGAGCCAA               TTCGC TCCAT GCGAA               ATTCATTATTTCCTG  54 120
CCO40_RS10935 2268597 .. 2268611 -  -2.8  -4.65168   ACCACATCTTAAAAA               TGCC CCAGCCC GGCA               GCGTTGTCGCTTCAG  67 91
CCO40_RS10920 2264349 .. 2264360 -  -5.8  -3.51232   CCGTCCCCAAACCAA                CGAC CCAG GTCG                 GGCAGCAAGTTCTTG  57 492
        ydcK 2260837 .. 2260850 -  -6.7   -3.2964   AAAGTGTGGCTACAA               CAGTC GCTC GACTG                GCCGCAATATGTCAC  56 440
CCO40_RS10890 NONE
        sgcB NONE
        sgcC NONE
        sgcQ NONE
        sgcA NONE
CCO40_RS10865 NONE
CCO40_RS10860 NONE
     aac(6') 2254475 .. 2254495 - -15.5  -4.23674   CCCCAGTAATATAAA            GGTCGGGTA CTA TACCCGACC            TTTTCCTGTATGATT 100 45
CCO40_RS10825 2246351 .. 2246361 -  -4.6  -3.61398   GCTTCGCTTGAAGAA                 CAGG CTG CCCG                 CTTGACGCAAGCCGT  52 156
        steB 2242134 .. 2242145 -    -3  -3.73775   GGCACTCTTATGAAA                TTAC TCTG GTAA                 AAGTCAGGCTTTAAT  52 168
        sseJ 2239459 .. 2239483 -  -4.1  -4.61199   ACGGTATAGACAAAA          CGGCGGCACGT AAA ACCTGGCGCAG          AGTGCCGGAATCCAC  69 333
CCO40_RS10785 2237641 .. 2237670 -  -4.3  -2.67143   ATAGCCAGCATATTA       CCTGATGACATAG CTTA CTATTTCATCCAG        CTATCGACAATGCCA  46 13
CCO40_RS10780 NONE
CCO40_RS10775 2236240 .. 2236259 -  -2.8  -2.79106   AAAGAAGAGAGACCA            GC-CAGCGA TCA TCGTTGTGC            CTCGCTAAAAAAACA  41 14
CCO40_RS10770 2235571 .. 2235583 -  -3.4  -2.64925   ATAGTGCAGTACAAC                TCAG TAACC CTGA                CCGTAATGGCGAAGC  42 13
CCO40_RS10765 2233458 .. 2233474 -    -3   -4.4078   GCGCTGGAATTAAAA              CAACGA AGCAA TCGTTA              GGCAAGCATTAATCA  60 435
CCO40_RS10760 2232579 .. 2232612 -  -6.7  -4.61199   ATTCCATACAGAAAA     CGCCTGCGTCT AACCAGGACCCG TGACGCAGGCG      AAGGAGGACGGGTCT  79 171
        azoR 2226227 .. 2226245 -  -6.6  -3.14344   TATTTGCGCTACGAA             CCGGAGAC GTT GCCTCCCG             TCGAAACGGGAGGCA  54 48
        ldhA 2221262 .. 2221285 - -12.4  -4.13767   GGGGTTATCCGAAAA          TGCTCCCCTG AGCG CAGGGGAGCG           ACAGGATTAGAACAG 100 32
        hslJ 2220567 .. 2220584 -  -6.9   -2.8552   CGCCAGGGATGAAAG             CGGCGAT GTCC AGCGCCG              GCGAAGCGAATTGCG  56 212
CCO40_RS10700 NONE
        nifJ 2216606 .. 2216625 - -13.6  -3.50047   CGTATAAATTGACAA            GCCCGAAC GGAT GTTCGGGC             TTTTTTTGTTTCTAG 100 61
        uspF 2215523 .. 2215533 -  -2.4  -2.75481   TCCCAATGCGAACCA                 TCCC TGC GGGT                 ATCATTTATGCTATT  39 237
        ttcA 2214033 .. 2214061 - -14.6  -2.66008   AAATGATCGATAGCA        TGGCGTCTCAGC GGAGT GCTGAGACGCCT        GCAGATTATTTCACT  89 31
         ogt 2208113 .. 2208125 -  -4.8  -3.36175   AAGTGTGACCGATAA                GGCA CTTTT TGCC                TGTATATTCATAATA  54 33
         fnr 2207102 .. 2207118 -  -2.2  -3.91352   ATATGGTGAATGAAA              CAGAGG AAGCG CTTCTG              CCAGATCAATAAATG  53 92
        uspE 2206041 .. 2206078 -  -9.1  -3.26531   TGAGTAACAGGAATA   GGGTATTGGCCGGATGGC AGC GCCATCCGG-CAGGACGC   AAGAGGGATTAATCG  70 34
CCO40_RS10630 2204467 .. 2204501 - -14.5  -3.12668   CATTCGGACAGGGAA    GCCTCGGTGCCCGATAA GCG TTATCGGGCACC--GGC    TATCTTTTATTTTAT  89 32
CCO40_RS10620 NONE
CCO40_RS10615 2202660 .. 2202672 -  -4.7  -3.76837   CAGAGAACCGAATAA                CCGGC AAT GCAGG                GGCGCAGGCATTCTC  58 77
CCO40_RS10590 2196690 .. 2196702 -  -4.1  -3.92178   AGCATTTTAATTAAA                CGTTA TCT CAACG                AGATAAATGGTTAGC  57 381
CCO40_RS10585 2195413 .. 2195428 -  -3.2   -3.1352   CCTGAATTGAATAGA              TCGCCT GTAT AGCCGA               ATTCCGGGTATCGGC  46 153
        bdcA 2193550 .. 2193576 - -10.9  -3.04248   GAACAGCTTCTAACA         CGGTTGCCG GAGCGTAGA CGGCAACCG         TGTGATATTCGCCTG  76 45
CCO40_RS10555 2190340 .. 2190376 -  -8.5  -2.57013   TGTTAACTCAAGGTA    GCCACGCCCGCCGCCTG ATG CTGGCAGAAGGCATGGG    GATTAAGCGAGCGCC  63 55
        mpaA 2187543 .. 2187555 -  -6.2  -3.58343   CGCAGTAGTCTGAAA                GCCC TGACG GGGC                GCTACGATATGATCA  57 248
         tpx 2186134 .. 2186157 - -13.2  -5.70829   AAGAGTAGAAAAAAA          GAAGGCCTCC GGAT AGAGGCCTTC           TTGTGACAAAAGAGC 100 84
        pspF NONE
        sapA NONE
        sapB NONE
        sapC NONE
        sapD NONE
        sapF 2173305 .. 2173327 -  -6.3  -3.14051   GCAGTCGCATGAACA           CCCTCAG AGAATCGAA CTGAGGG           TATTTGTTTCGCTTA  57 38
CCO40_RS10450 2170486 .. 2170509 -  -2.4   -3.2794   CGGGACGGATAGCAA          GTACGATAGCG ATG CGCTTTC-CAC          CAGACAAATAAAGGT  45 79
        fabI 2169280 .. 2169296 -  -3.8  -3.49176   GAAAGGGATGAAAGA              TTGTTA GGTGA TAACAA              ATATCAGAACGCTAT  52 113
CCO40_RS10435 2165982 .. 2166008 - -14.5  -4.96427   GAAGAAGAAAAGAAA         CGGCCTTTGCC TTCTC AGCAAAGGCCG         TTGAGCGAGCTAAGC 100 45
        pdeR 2163738 .. 2163748 -  -2.4  -4.00465   GAGAAGGGAAAAATA                 GGGC TAT GCCT                 GTCTGCACAGGCTGT  53 61
CCO40_RS10425 2163442 .. 2163469 -  -6.8  -2.94622   ACAGACAGTCAGAGA        GCCGGGAAGGGC TAAC GGCCATCCCGGA         CAAATAATCGCTATC  56 39
CCO40_RS10420 2162610 .. 2162631 -  -9.5  -2.72799   GTCTTAGAGAGAGGA           TGATTTGCC ATAG GGCAAACCA            TCGGGAAATATTTTA  69 38
        osmB 2162054 .. 2162079 - -11.9   -4.4078   GGCGGCTAATGAAAA         CGCCACGGT TGTAAATT ACCGTGGCG          TAAAAGTCAACTTTG  95 113
        ribA 2157162 .. 2157172 -  -8.2  -5.19212   ACCAGCAGGAAAAAA                 CGCC GCT GGCG                 GTAATTGCCGGGAAA 100 462
CCO40_RS10355 2148864 .. 2148893 -  -5.7   -3.9712   GCAGGGCAGTACAAA       CGTACCCTGACCT TGTT AGGCGAGAATACG        GAAGAAGGGCGGCAG  65 397
CCO40_RS10345 NONE
        cobO 2146295 .. 2146317 - -10.4  -3.53091   ATCCCGCTGCCGAAA           GGCCTGCCGC GCG GCGGCTGGAC           TGAGCTCGACCTCGC  74 299
        trpL 2143789 .. 2143807 - -10.2  -5.75342   TTTGTTCAAAAAAAA             GCCCGCTT AAC AGGCGGGC             CGGGTATCGTTTGGC 100 46
CCO40_RS10315 NONE
        trpD NONE
       trpCF NONE
        trpB NONE
        trpA 2137199 .. 2137221 - -12.7  -3.15579   CCAACCTCTCATTAA           GCCGCCAGC GTTAT GCTGACGGC           TTAACCCGTTATGCG  86 34
CCO40_RS10290 2136505 .. 2136526 - -12.3  -3.63744   CTCCTGGGCAAAATA           CTGCGAGCC AGAA GACTCGCAG            ATTGCTTGATAAAAG  95 68
CCO40_RS10285 NONE
CCO40_RS10280 NONE
CCO40_RS10275 2134441 .. 2134459 -   -16  -5.14563   GTTGTGACGAAAAAA             GACCCCGC CAG GCGGGGTC             AAAAAAGGACATGAC 100 64
CCO40_RS10265 NONE
CCO40_RS10260 2132233 .. 2132248 -    -6  -2.80016   TTCCATCATCAACGA              GCGTCG AATG CGCCGC               GTAACGGCGCATTGC  53 44
CCO40_RS10255 2131626 .. 2131654 -  -4.5   -4.6971   TAAAGGCGAAGAAAA        TATCGCCAGGC GTTCGCA GTCTGGCGATG        ATAAGTCACGGGAGG  71 42
        yciA 2131052 .. 2131101 -  -8.5  -2.52015   CGCAGATTGAGTAAT CTCTGGCGCCGCCAGTAGG-AATA TAC CATCACCTGCTGGCGGCGTAAGCG GGTATACTTAACCCT  63 33
CCO40_RS10240 2129773 .. 2129792 -   -15  -3.91897   TGTGTGAGCCAGAAA            GGGCACCG TATG CGGTGCCC             AACAGGCCATCCTTT 100 41
         cls NONE
CCO40_RS10225 2127581 .. 2127622 -  -5.1   -3.4582   CTACCGGATTAAACA GGCT--TGCCGGAGGGCGC AATCAG ACGCCATCCGGCCTGAGCC GCTTATTCGCGCCAG  56 28
        adhE 2116451 .. 2116468 - -12.7  -6.09196   GGTAAAACAAAAAAA             CGGCCTC AATT GAGGCCG              TTTTTGTCATGCTAA 100 54
         hns 2114568 .. 2114584 - -13.7  -5.96219   CAGGCATAAAAAAAA              TCCCGCC AGC GGCGGGA              TTTTAAGCATCCAGG 100 48
CCO40_RS10155 NONE
        purU 2109751 .. 2109780 -   -10  -3.06261   GGGTAATGCTTAATA       CTGGCCCGCTTCC TTTCG GGAAGCGGGGC-G       CATCATATCAAATGA  73 136
CCO40_RS10145 NONE
CCO40_RS10140 2109415 .. 2109428 -  -6.7  -2.57132   CCCTTCCCCGACAAG               TGCAG ACTT CTGCA                TTGCTCATCGAGTTA  55 63
CCO40_RS10135 NONE
CCO40_RS10130 NONE
CCO40_RS10125 NONE
CCO40_RS10120 NONE
CCO40_RS10115 2108498 .. 2108509 -    -3  -4.57569   TCATCTGGCGAAAAA                TTGA CCAG TCAA                 AGGAGGCGAAAAAGA  67 163
        narX NONE
        narL 2095089 .. 2095100 -  -3.6  -4.56597   CGTGCCGCTCAAAAA                GCAG CTTG CCGC                 CAGTGAAGTGGCGCA  69 474
CCO40_RS10065 2093401 .. 2093424 -  -3.1  -4.45693   CAATATAAAGATAAA          GCCGATCGTC GTGAT GACG-CCAGC          CGCGAGGAAACCGCA  64 195
        chaA 2091787 .. 2091807 -  -7.5  -3.53012   CTGCCGCTGGCGAAA            CTGGAGCAG TTC CTGACCCAG            ATAAAAGCGATTGAT  62 135
        lolB NONE
        ispE 2084627 .. 2084641 -   -10  -3.62522   CAACGTCTGGAACAA               GGTGAC GTT GTCACC               GAAGCTCAGCTTGCC  78 160
         prs 2083531 .. 2083544 -  -9.5  -5.76633   TTACAGACAAAAAAA               CCCGC CGCA GCGGG                TTTCAGATCCGGGTT 100 44
        dauA 2081673 .. 2081688 -  -3.2  -3.99324   CGTCACTATGACAAA              CGTTGC CGCC GTAACG               ACAATCGTCGTCATA  55 90
         pth 2080538 .. 2080565 -  -9.8  -2.94099   TTCGCCTATTATACA        CGGCGTGCGGCA AAAA TGCCGCACATCA         CTGGTTATTGCGCCT  70 30
        ychF 2079282 .. 2079299 - -11.3  -5.01811   TTATGAAATGAAAAA             TCCACGC AATG GCGTGGA              TTTTATAGCTTTTTG 100 88
CCO40_RS09985 NONE
CCO40_RS09980 2077388 .. 2077400 -  -5.5  -3.53012   CTGTCCGTGTCCAAA                CTGGC TGC GCCAA                TAACGCCTGGTGGGA  57 116
CCO40_RS09970 NONE
        hyaB NONE
        hyaC NONE
CCO40_RS09955 NONE
        hyaE NONE
CCO40_RS09945 2069731 .. 2069748 -  -6.3  -2.86773   GTAAAAAGCTAATCA             GT-ACCGG ACA CCGGTGAC             GTTCCTGTTGAGAGC  55 42
        appC NONE
        appB NONE
        cbdX 2066858 .. 2066889 -  -6.5  -5.36364   GTAAAAAGATAAAAA      TAACCGGAGTCAG ACGGCG CTGGCCCCGGTTT       ACCTCTTTATTGTTG  91 32
CCO40_RS09925 2065186 .. 2065203 -  -7.7   -5.4492   TATACAGACAAAAAA             TCCACGC CGGG ACGTGGA              TTTTAGCGCAATGAT  95 49
CCO40_RS09920 2062894 .. 2062912 -  -3.2  -2.59537   AGCGATAAATAAATT             TTTATGTC CGC GAGATAAA             TCAGTGTTCAGAAAT  42 414
        ycgR 2061591 .. 2061601 -  -8.2  -4.68593   CCCATCAGTGAAAAA                 GCCG GGG CGGC                 ATGGGGGGTTGATCC  90 505
        ldcA NONE
CCO40_RS09895 2058475 .. 2058495 -  -2.5  -3.28712   TGCCGTTTGTGACAA            CGTAACCTA ATT CAGGCTAAG            GCGTCGACCGGTCCA  46 71
CCO40_RS09880 2053983 .. 2053995 -  -4.8  -3.76492   CTGAACGGCATGAAA                GGGT TATAC ACCC                GCATTGGTCGCCACT  55 272
        nhaB 2051679 .. 2051709 -  -2.5  -4.68994   ATTATCAGGCAAAAA      TCGGAGCCGGGC GGTGTATT GCCCGGC-CAAA       CGTTACGAAAGCGTT  65 28
        dsbB 2051018 .. 2051033 - -10.4  -5.75342   TTCGGGCAAAAAAAA              CGCTCC CGAA GGAGCG               TGTGTATCAACGACC 100 32
CCO40_RS09860 2050174 .. 2050202 -  -7.5  -3.39895   TGTGCTATTAACCAA       CCGCCTGATGCAC CGTCT GTGC--CAGGCGG       TTTTTTACATCTTCT  63 413
        minC 2047294 .. 2047306 -  -4.9  -3.29973   TTAAAAAGGGATCAA                TTCAA CGG TTGAA                CTGTCAAAGCGTTGT  54 9
        minD NONE
        minE 2046128 .. 2046157 - -15.3  -5.57054   AATAATGTAAAAAAA       TAAAAAAGGCAGA TTCT TCTGCCTTTTTTA        ATCCAGGAATTTTCC 100 52
CCO40_RS09790 2039032 .. 2039044 -  -2.6  -3.73647   CTTAGTCATGAACAA                CAGC AAAAA GCCG                TAGAACGTATCCAGG  50 162
        pabB NONE
CCO40_RS09775 2036777 .. 2036790 -  -2.3  -3.19026   TAGTGTAAGAGGGAA               CGCTG GCAT CAGCT                TAACTATTCACATGA  44 204
        sdaA 2035296 .. 2035324 - -13.9  -5.10968   AGGAAGAGATAAAAA        TTTCGCCCATCCG TAG CAGATGGGCGAAG        GGAGGGGAAACGGCG 100 42
CCO40_RS09765 2033154 .. 2033170 -  -3.7  -2.71791   AGTGGTGCCGGAAAC              GCTTGAT CCT ATCAATC              TGTTAGGCGTTTTGC  43 457
        manX NONE
        manY NONE
CCO40_RS09745 2028829 .. 2028846 - -14.1  -5.76237   CAGAGAAATAAAAAA             CGGGGCC GTTT GGCCCCG              GTAGTGTACAACAGC 100 42
CCO40_RS09740 2028281 .. 2028296 -  -6.2  -4.66537   TTGGTCAATAGAAAA              TATAGC CTTA GCTATA               TTATGATTCGAAATA  78 76
        mntP 2027306 .. 2027316 -  -6.8  -3.61715   GACGTGTGGGAACAA                 CTGG CTG CCAG                 CGCCGGACTTAGCTG  62 80
        yobH 2022441 .. 2022463 -  -9.2  -5.78622   TGACGTTAAAAAAAA           GCAGCTAC GAAAAAT GTAGCTGC           TTTTTTTATAACATC 100 184
CCO40_RS09690 2020047 .. 2020064 - -12.7   -4.3534   TGGCAAGTATGAAAA             GCGCGTC GAAT GACGCGC              TTTTTTTACGCCTGA 100 31
        yebS NONE
CCO40_RS09660 2011552 .. 2011577 - -12.5  -4.46926   CAGTGTAGCATAAAA         CGCTCCGGCGC GAGT ACGCCGGAGCC          GGGTGTTTAACGTGG 100 32
        rsmF NONE
CCO40_RS09650 2009686 .. 2009701 -  -8.2  -4.34486   AGGAAGAATAAATAA              CCCGCC TGGC GACGGG               TTCTTTTTGAGTCAG  79 37
CCO40_RS09645 2009392 .. 2009402 -  -2.4  -3.31905   AGCGCGGATACAATA                 GCGG TAT CAGC                 GACCAGGGTTAAAAA  45 34
CCO40_RS09625 2006273 .. 2006285 -  -3.3  -3.53012   CCCTGGCTTGTTAAA                GCGGC ATG ACCAC                ATTTTCTATATATAA  50 8
CCO40_RS09620 2005250 .. 2005272 -  -8.4  -3.07443   TCACATTTGAGCTAA           TACCCCTGGC ATG GCTAGAGGTA           CTCAGACAGCCGCTT  66 215
CCO40_RS09610 NONE
CCO40_RS09605 2003269 .. 2003298 -  -2.7  -3.57406   CCGGGACGATAAATA       TCCGCAAATCAGC AAAA GCTGGCGTGCGCA        CTGGGAAAACCTCAA  50 438
CCO40_RS09590 NONE
CCO40_RS09585 1999350 .. 1999360 -  -5.4  -4.10925   ACACACTCCTTAAAA                 TGAC AAA GTCA                 GCGAATTGGTCATAT  65 9
CCO40_RS09580 1998376 .. 1998392 -  -2.2  -4.52857   ACGCTGTACAGAAAA              TTCCCT GTGTT AGGGTA              ATGCAGTATTTCCAC  61 353
CCO40_RS09565 1996356 .. 1996372 - -13.7  -3.27298   TGGGTGAATGATGAA              GCTGCGG AGG CCGCAGC              CAGACTTCGTGAAGC  93 330
CCO40_RS09540 1994347 .. 1994376 -  -7.9  -3.99985   GAGAGAGTCAAATAA       TTACAGGAGGCAT TGAA ACTCCCCCTGTAA        TATTGCTGTAAAAAA  72 268
CCO40_RS09500 NONE
CCO40_RS09495 NONE
        exoX 1988064 .. 1988098 -  -8.5  -2.91239   TACATAGCGCATAGA    CGCGCG-CGCCCGCAA CGGC TTGTGAGCGTCGCGGG     TTATTGTGGTGTTCC  65 26
        purT 1982994 .. 1983031 -  -6.4  -4.83615   CAGGTCTGATAAAAA  TGCGCTAACGTCGCCATC AGGC GATGGCG-CATTAGC-CT   TTTACCGTCACGCGG  80 19
CCO40_RS09445 1977412 .. 1977424 -  -3.4  -4.25104   CTCCGTTGACTAAAA                CAAC TTGGT GTTG                CGTGAACATTGATCC  60 115
         pyk 1975877 .. 1975902 - -14.9  -4.49958   ATCCCATCAAATAAA         TAAAGCCTCTC GTAA GAGAGGCTTTA          TGCTGACAAACCCTG 100 71
        znuC NONE
        znuB 1970516 .. 1970548 -  -5.6  -2.73364   CGCCGAGGTGAAGCA     TGACGGGGCTATTTC AGCG GAAATTGCCGCG-CA      GGCGCTGGATATGCT  47 369
CCO40_RS09395 1967277 .. 1967294 -  -2.7  -3.67141   AGAACGCGATGCAAA             TGAG-CGA GAG CCGACTCA             ATCTGGCGCGGGGAA  51 53
CCO40_RS09370 NONE
CCO40_RS09365 NONE
CCO40_RS09360 1961496 .. 1961512 -  -3.6  -4.85782   TCCGGGAAAAATAAA              GGCGCA TATTG TGCGCT              AATACAGGGAGAAAA  69 24
        cmoA NONE
        cmoB NONE
        argS 1956166 .. 1956194 - -14.6  -5.06414   CTGTGGCAATAAAAA        GGCCTGAGTCCG TTATC CGGAGTCAGGCC        TGATGATGTTAACGA 100 49
        mrdA 1953929 .. 1953943 -  -2.8  -3.33922   AGGTGGCGGAAAAAG               CTATTC GGG GGATAG               TGAAACATATCTCGC  47 240
CCO40_RS09250 NONE
        uspC 1937244 .. 1937278 -  -5.7  -3.53761   TAAGCTGGCCTGAAA    TATCGCGAGC-GGCGA CTAG TCGCCCGCTAACGGTA     CCAGCAACACATCTA  57 6
CCO40_RS09220 1932747 .. 1932769 -  -9.8  -3.30159   GTAATGCCTGGACAA           GACAGAGGCG TTT CGCGCCTGTC           GGCTGGCATGATGTG  74 170
CCO40_RS09210 1931429 .. 1931448 -   -10   -5.3167   TAAAAATAAAGAAAA            GCCAGCAC CTTC ATGCTGGC             AATAGCGACCCTGCA 100 83
        ftnA 1930574 .. 1930589 -    -6  -4.63932   GAGGCGGCAATAAAA              GCGCGC TTTG GCGAGC               GGGCACGATTTCACA  75 205
        tyrP 1928953 .. 1928966 -  -3.8  -3.52177   CGGCAAAAAATTTAA               GCAG TGCTGC CTGC                ATTAATGGCTCGTAA  52 105
CCO40_RS09140 NONE
CCO40_RS09135 1921030 .. 1921056 - -12.2  -3.63627   GCGCCAGACGCGAAA         CCGGCTGAAAGC GAT GCTAACAGCCGG         TTTTTTACTACTGGC  89 33
        fliD NONE
        fliS NONE
        fliT 1909935 .. 1909948 -  -3.8  -3.28712   TTCCGTGCTCCAGAA               GTCG TTTAGC CGAC                CTCTGGAGTATGGAA  50 67
        amyA 1908369 .. 1908382 -  -5.9  -5.24129   CCGCGTTAGAAAAAA               CGCCG CTGC CGACG                CCGCTGCCGTAATTT  83 77
        yedE NONE
        yedF 1906327 .. 1906353 -   -13  -2.60508   TATGCCGTAAAAAGG         TCTCCCGCCGTA ACG TACAGCGGGAGT         ATGCGCTTATTTTTG  84 32
CCO40_RS09045 1905637 .. 1905658 -  -7.1  -2.54896   TGCTTACCTAAGTCA           GCGGCGGGG GGGG CCGCGACGC            CCATGCAACCAGTGC  57 75
        fliF NONE
        fliG NONE
        fliH NONE
        fliI NONE
        fliJ NONE
        fliK 1898590 .. 1898604 -  -2.8  -3.96148   CCTGTCCACGACAAA               GCGT GGAAAAG ACGC               GGATAATCATGCTAC  54 49
        fliL NONE
        fliM NONE
        fliN NONE
        fliO 1896255 .. 1896278 -  -2.2  -2.56982   AAGGAATAACAAACG          GCGCATCAGG ATCT CCCGGAACGC           TTGAGTAAGCTCTTC  39 7
        fliP NONE
        fliQ NONE
        fliR NONE
        rcsA 1893334 .. 1893356 - -12.6  -4.14392   GGGTAACCGTTAAAA           CGGACGGCGG TCC CCGCCGACCA           GGCGTGGTACTGGCA  95 205
        yodD 1892695 .. 1892714 -  -2.1  -2.97543   AAAAATCCTAAAGCA            CATCCGA AAGAAG TCGAACG             CTAACTGGAACCGAT  41 258
CCO40_RS08955 1891376 .. 1891407 -  -2.8  -4.56597   GCGCTGTTTGAAAAA      GCGTCCAGGCTG-GC AAA GCGCTACCGGGAAGC      CCGCCAGCCATTTTC  67 440
        yedA 1887645 .. 1887681 - -12.4  -3.02144   GGAGCGCCTGGAAGA   GTGGATCTGCG-GC-GGC GGC GCCAGCGCGCAGATCGAC   ACCCAGGGGATTCAT  76 41
       ompS1 1882798 .. 1882822 - -17.9  -3.78934   CTTGCCCTATAATAA          CAAGCCCGCGC TAA GCACGGGCTTG          AATAACATAAAGCGT 100 42
        mtfA 1878440 .. 1878452 -  -5.5   -3.3482   CAATTGGTTAATTAA                CCCAC AAA GTGAG                GAATTAATGTTCGGA  56 29
CCO40_RS08870 1878243 .. 1878272 - -13.7  -2.73529   GTTGATATAAATGCA       GAAAGCAGACGTC AGTG AACGTCTGCTTCC        CTAAATTTGGCTCCT  86 33
CCO40_RS08860 1877219 .. 1877246 -  -6.2  -5.05782   ATGGATGTCAAAAAA        CCCGGCAAACCT TATC AGATCAACCGGG         TAAAGATAATTTCTT  83 89
CCO40_RS08855 1876525 .. 1876546 -  -5.1  -2.67803   GCGCGACGAAAGTGA           CGCACCGG TTGAGTG CCGG-GCG           CGAAAGATCGCGGAT  48 153
CCO40_RS08840 NONE
CCO40_RS08835 1871060 .. 1871077 -  -4.1  -2.74144   GTGTGACCGGTAAAT             CCCGC-GA CTA TCTGCAGG             CAGCGATGGCGCTGG  45 151
CCO40_RS08825 1870363 .. 1870420 -   -36  -2.51871   TGTGATATGAAAAGC GGCACAATAAGGCCTTAGCGGGAGGC GATTCT GCATCCCGCTAAGGCCTTATTGTGCC GCGAGCTTCATCACC 100 425
CCO40_RS08815 1868477 .. 1868487 -    -4  -4.25056   GATCTCATGAATAAA                 TTCT TCG AGAA                 ACTCAATGTCGAGCG  64 174
CCO40_RS08790 1865446 .. 1865473 - -14.2  -5.00884   ATGGGTGTCAAAAAA        CCCGGTAAACCT TATC AGGTTAACCGGG         TAAAGATAAGTTCTT 100 89
        pduA NONE
        pduB NONE
        pduC NONE
        pduD 1841293 .. 1841303 -  -8.2  -3.73224   TTATCCTTTATCAAA                 GCGC CAC GCGC                 AGTTCCTGCGGGTTT  71 10
        pduE NONE
        pduG NONE
        pduH NONE
        pduJ NONE
        pduK NONE
        pduL 1837132 .. 1837158 -  -2.1  -2.57463   AATCTCCTCGACAAT         GCGCTGCAGGG TTTCG CCGTTCATCGC         GGGCCTACCAGCCGG  39 19
        pduM NONE
        pduN NONE
        pduO NONE
        pduP NONE
        pduQ NONE
        pduS NONE
        pduT NONE
        pduU NONE
        pduV NONE
        pduW NONE
        pduX 1827814 .. 1827830 -    -3  -4.30576   TCGCCAGTATGAAAA             GCGA-CT ATGA AGATCGC              GTTGATGACTACATC  62 170
        sopA 1817625 .. 1817644 - -12.2  -2.91264   GGGTCTATGTACAGA            GGGACACA ACGC TGTGTCCC             TTAATTTCATGCGGG  80 52
        sbcB 1815790 .. 1815808 -   -16   -4.4261   TCGGCAATAGTAAAA             CCGGAGGC AGT GCCTCCGG             TTTTTTGTCTGTCAT 100 115
        hisL 1812030 .. 1812056 - -22.4  -6.06723   CGCGCCAAAAAAAAA         GCCCCCGGAAGA TGA TCTTCCGGGGGC         TTTCTCATGCGTTCA 100 66
        hisG NONE
        hisD NONE
        hisC NONE
        hisB 1807516 .. 1807530 -    -5  -2.71011   AGCCGGTGTCAAGGA               TGACGA CGT TCATCA               CAGCACTCCTTTCGA  49 23
        hisH NONE
        hisA NONE
        hisF NONE
       hisIE 1804812 .. 1804826 - -12.8  -5.14563   TTTCTCATTAAAAAA               CCGGGC ATT GCCCGG               TTTTTTTACGCTTAT 100 37
CCO40_RS08250 1756641 .. 1756681 -  -9.7  -2.71791   AGTTTTTGGCCAAAG GGCAGAGCCGGATGGTGAG GCTAA CGCGCC-TCCGGC-CTGCC TGGTAAGCAGGCCGG  69 57
CCO40_RS08230 1749840 .. 1749857 -  -4.8  -4.07687   ACGCTGGCGGGAAAA             CTGGCGC TCGCC GCGCC-G             CCGGATATTGAGCAG  62 266
        yegD 1747579 .. 1747598 - -11.4  -3.71649   CGCTGAAACGGGAAA            GCCCCTCC CGAG GAAGGGGC             CAAAATAAGGAAAGG  91 202
        mdtA 1746087 .. 1746097 -  -6.8  -3.08679   TGCCCGGAGGTAATA                 CCTG CAT CAGG                 CGCGCGCTCCTTTTT  58 21
        mdtB 1742965 .. 1742976 -  -3.6  -4.66264   GAAAAGGGCGAAAAA                GCGC ATCT ACGC                 CTCCTCTTTATGGCG  66 20
        mdtC NONE
CCO40_RS08195 NONE
        baeS NONE
        baeR 1736322 .. 1736332 -  -5.4  -3.63744   CGTTGGCGGAAAATA                 TCGT CTT ACGA                 CCTTGTTATTGTTAT  59 52
CCO40_RS08180 NONE
CCO40_RS08175 NONE
CCO40_RS08170 1731995 .. 1732011 -  -2.9  -2.78384   GGCGGCTTGAGGAGA              GTCCTCA CTT TAAGGGC              GGGCATTGTAGCGCC  41 64
        yegQ 1730411 .. 1730436 - -13.4  -4.65666   ATACGCAAAAAATAA         GCCTGCGTAA GGGAGA TTACGCAGGC          CAAGGAGGTGGTTCC 100 162
       sseK2 1728752 .. 1728762 -  -5.4  -2.83371   TATCTTACTAACAAG                 CACT AAC AGTG                 AGTATATAATGATAT  47 339
        yegS 1726669 .. 1726690 - -11.6  -4.78572   GTTCAACGAAGAAAA           GCCGGATG TGAACG CATCCGGC            CAGCGACAGGTGTTA 100 41
CCO40_RS08135 NONE
CCO40_RS08130 NONE
CCO40_RS08125 1722029 .. 1722078 -  -8.6  -3.62864   CAAATGGATGGTAAA GTGCCGGTGCTGGTGATTAAGCA GGTGG CGCTCGATCAGCAGCAGCGGC-C TATTGAATACAGCAT  68 60
        rcnB 1718835 .. 1718866 - -12.4   -2.6175   GATAGGTGAATGAAC      TTCCGGTCACTTAC AATA ATAAGTGACCGGGA       TGACAATTTTTCTGC  81 208
        metG 1709822 .. 1709839 - -12.7  -5.03145   TAAGCGGTTAAAAAA             GCCGGAG CATG CTCCGGC              TTGTTGCTTATTTCA 100 33
CCO40_RS08065 1709085 .. 1709104 - -11.4  -5.01553   AATTCATAAAGAAAA            GACGCTGC CGAA GCAGCGCC             CTGAGCGACTTTACC 100 69
CCO40_RS08060 1708137 .. 1708152 -    -4  -3.37685   AAAACGCGGCAAAGA              TG-AGGC GGC GCCTGCA              TTGACGGCGGAACGT  49 319
        mlrA NONE
CCO40_RS08035 1704189 .. 1704202 -  -2.4  -2.50016   GGTGATTATTAATAT               TGGT ACGGCG ACCA                TCGCTTCAACGGTGG  38 176
         dld 1696035 .. 1696051 -  -6.5   -5.2197   TATAAAAAGCAAAAA              GCCGC GCAAATG GCGGC              AGCCAGCGCCAGTGC  91 126
CCO40_RS07990 1693619 .. 1693662 -  -5.8  -4.72188   TCAACGCAAAATAAA CGCCGGGTGCCGGATGGC GGCGTTAT GCCATCCGGATACCATCG GGTTTAACGGGCCTC  74 29
CCO40_RS22440 1690914 .. 1690950 - -10.8  -3.30771   CTACAGCGTCCAGAA    CGTGTGCCGGGCAG ATACTATCG CTGCCCGGCGCAGG    AATCAGAAAATCATC  80 41
CCO40_RS07940 1683734 .. 1683744 -  -2.6  -3.55447   GGATTCATCATACAA                 TTAA ACG TTAA                 AACGTGCTACCGATC  48 110
CCO40_RS07935 NONE
CCO40_RS07930 1682482 .. 1682494 -  -7.7  -3.22106   AACAATGTAATGGAA                CCGTA GTT TACGG                GCCTGCTATGTCTTA  64 138
         cdd 1681537 .. 1681550 -  -8.1  -3.30243   AGTCAGGCCGGATAA               GACGC CAGT GCGTC                GCTATCCGGCACATT  65 44
        sanA NONE
CCO40_RS07915 1680264 .. 1680276 -  -2.6  -3.70505   TAAATTAAGGCGAAA                CGCA AATAA CGCG                TTTTAATGATCCAAA  50 180
CCO40_RS07910 NONE
        preA 1677715 .. 1677741 -   -13  -3.54475   TTGCTTATCAGATAA        CCCGGCGCAGC GAAACT GC-GCGCCGGG         CTTCATACCGCGAGC 100 40
        fghA 1669298 .. 1669310 -  -9.1  -2.74012   GGAGGAGGTGAATTA                CAGCG CGG CGCTG                GAAAATTCATTATGT  66 35
        serB 1666476 .. 1666487 -    -3  -2.59431   TCGCGTTATAATTCA                TCTT CAAT AAGA                 AAAAGAAGCAATTCG  40 4
CCO40_RS07850 1665074 .. 1665106 - -19.2  -2.98823   CGTTTCTGACAGAGA      CTGGCGACAGCCGC GTTTT GCCGCTGTCGCCAG      AATGTTATAACCGAT 100 30
CCO40_RS07830 1658999 .. 1659011 -  -4.1  -3.21218   ACGGTTCATTACGAA                CGCTA TGA TAACG                GGTTAACAGGCGTGA  48 52
         nfo 1658046 .. 1658083 - -12.9   -3.6944   GGCGTAAGAGAAACA   CGCTAAAAAAGGCAGAG CGCG CTCTGCCTTTTTTATTG    CCTGAAGAACATTGA 100 44
        setB 1652420 .. 1652440 -  -2.6  -4.83615   TAGCGTGCATAAAAA            TATGTTAC AAACG GAAACATA            TGCAAAGCTATCATT  72 298
        yeiP 1650282 .. 1650310 -  -7.4  -2.77779   TCAATAAATAAAAGG       GTCAGACTGCGCC CTGG GGCGCAGCC-GAA        AAATGCGAAACTTAA  58 37
CCO40_RS07780 NONE
CCO40_RS07775 1648323 .. 1648358 - -13.6  -4.01853   GAATATCATCATAAA    TTACCTTCAACGAT-GT AAA ACTATCGCTGAAGGTAA    TGTTAATTACATAGG 100 41
        mepS 1647319 .. 1647336 - -11.3  -4.59414   GGATAATAAGCAAAA             GCACTGC CGAA GCAGTGC              TTTTTATGTCGTCTC 100 77
CCO40_RS07765 1645464 .. 1645476 -  -3.3  -2.96444   TCGCTGAATAATAAG                TGACG TTG CGTCT                GATGTGAATCCGTTA  44 55
CCO40_RS07760 NONE
CCO40_RS07755 NONE
CCO40_RS07750 NONE
        yejF 1639624 .. 1639637 -  -4.5  -4.09864   ACCGATTCCGCAAAA               CGG-GC AGA GCACCG               AGAATAGTCTGGTGG  62 262
CCO40_RS07725 1635205 .. 1635234 -  -4.9  -3.61517   ATCTCTCTTTAATAA       TTCCTGCTACAGG CGAC CCAGCAACAGGTA        AGTGATCTGCTTTGC  57 101
        rplY 1634863 .. 1634878 - -11.8  -5.68039   AAACGCATAAAAAAA              CCCCGC CGGG GCGGGG               TTTTTCTTCAACTTC 100 48
CCO40_RS07705 NONE
        yejM NONE
CCO40_RS07695 1630755 .. 1630772 -  -8.4  -5.65177   ACAGGCATAAAAAAA             CCAGCC GTAACA GGCTGG              TTCTTCGAGGAATTT 100 41
CCO40_RS07685 1629788 .. 1629823 -  -5.4  -4.70319   TTACGAAAATGAAAA    TCCGCCACAG-CGCGAT CAA AACGTAACTATGGCGGA    TATTGAAAAACTTTA  74 38
CCO40_RS07680 1627640 .. 1627655 - -10.4  -5.54907   TTTATAAAATAAAAA              GAGGGG CAAG CCCCTC               TGTTTATTTTGAAAT 100 29
CCO40_RS07645 1622438 .. 1622458 - -12.6  -3.63694   ATGGACGTTTAATAA            TACGCCCC ATGCA GGGGCGTA            TTATTTACTGGATGA  95 30
CCO40_RS07610 1616240 .. 1616252 -  -3.3  -3.03309   GTTGAATAACAATTA                GCGAG TTG CTGGC                TGAAGGAGTAATTCA  45 189
        narP 1614152 .. 1614197 -  -9.5  -4.11183   GCGCAGGAGAAATAA TGCCCTGAC-GGCCCGGTGGCG TGG CGCCACCGGGCCTGGCTTGTTA CTGCATTCCGCGTGT  81 23
         eco 1600506 .. 1600516 -  -4.6  -5.49809   GAAAGGGCAAAAAAA                 GCGC ATT GCAC                 TGCTGCTGGCGCTGG  93 500
        rcsD NONE
        rcsB 1590802 .. 1590830 -  -6.6  -5.24129   CGCGGGCATAAAAAA       TGCCGGA-TGGCG GCGT CGCCTGTCCGGCC        TGTAAAAGATGAGTC  87 95
CCO40_RS07460 NONE
CCO40_RS07455 1580410 .. 1580420 -    -4  -6.24157   ATTCATAAAAAAAAA                 TCAA AAT TTGA                 TCGAATGCTGATTTC 100 105
        nrdA 1577837 .. 1577854 -  -3.4  -2.71144   TAGGCCGGGTAAGCA             TAGCGC TACCCG GCACTA              TTCATCAGATCTTAC  43 30
        nrdB NONE
        yfaE 1575888 .. 1575899 -  -5.8  -3.06183   GTGAGCTGGATTTAA                TGGC GGCG GCCA                 GTAATTTCCTGCTGT  52 488
CCO40_RS07430 1574037 .. 1574073 -  -9.4  -2.54523   CCATAGTCGAAGTGA   CGCGCCGGATGAGGGCA TAAA CGCC-TCATCCGGCCTG    GCGCAACGTTTGCCA  68 82
        glpA NONE
        glpB NONE
        glpC 1566911 .. 1566926 -  -5.4  -3.88498   GGGGGATATATTAAA              TCAGGC ATAG ACCTGA               TTTTCTTATTATTCA  63 343
        sseL 1565511 .. 1565522 -  -5.8  -4.88067   AGTTATTGAGAAAAA                TGCC GGAT GGCA                 CGTATGCCTTACGCA  83 299
        nudI 1558498 .. 1558517 -  -9.3  -3.76413   TGTTAAAAGCGTAAA            GACAGCC TGAAGC GGCTGTC             GTCATTATAATAACC  77 30
        arnB NONE
        arnC NONE
        arnA NONE
        arnD NONE
        arnT NONE
        arnE NONE
        arnF 1549808 .. 1549831 -  -2.3  -4.78149   GTCAGAACTGAAAAA          CGGAGGGAT TAAAAT ATCTCGCCG           TGCGCTCCAGCAGTG  68 415
         rbn NONE
CCO40_RS07265 1539780 .. 1539797 - -11.3   -5.1971   AGTAAAAACGAAAAA             CCCGCTT CACG AAGCGGG              TTTTTTTACCTGATG 100 125
        alaA 1521108 .. 1521131 -   -14  -3.21062   GAGATGAAGATGCAA          TTCAGGCTAC CGAA GTAGCCTGAA           TTTAAGATTATTGAT  93 33
        yfbR 1520356 .. 1520383 - -10.6  -4.39166   CCCCAGACAGGAAAA        GGCCTGAT-GGCG TTG CGCTTATCAGGCC        TACGGGTATCACGCT  90 88
        ackA 1515162 .. 1515189 - -16.4  -4.37886   GGACGGGTTACAAAA        CAGCACCGCCAGC GAG GCTGGCGGTG-TG        AAATCAGGCAGTCAG 100 29
         pta 1512936 .. 1512947 -  -7.2  -3.30124   CTGTAGGCCGGACAA                GGCG TTCA CGCC                 GCCATCCGGCATTAG  63 50
        yfcC 1510977 .. 1510993 -  -5.7  -5.03715   ACTACGCGGAAAAAA              CGCGGCG TAT CGTCACG              TGTGAAAACCACAGC  84 266
CCO40_RS07115 1505887 .. 1505901 -  -4.2  -4.66833   CCGCAACGCCAAAAA               CGAAGC CGC GCCTCA               GGAGAAACCGGAAGA  71 56
        yfcG 1503153 .. 1503169 -  -5.1   -2.6381   AGAATCTGCATATGA              CCTCC AGAGTAG GGAGG              ATTTCCTCTTCCCTA  48 130
CCO40_RS07090 1502209 .. 1502234 -  -8.9  -4.54026   GCTGAAATAAAAGAA         GCCCGGCGGCGC ATT GCGT-ACCGGGC         AGGATACGGCGCTTT  88 46
CCO40_RS07035 1489995 .. 1490010 -  -3.2  -3.48474   GAAATGCATAACGAA              GGCTAA TGGC TTTGCC               AGCGGCGCGATGCCG  50 51
         flk 1479552 .. 1479573 - -14.5  -3.54424   GTGGAGGTTGTGAAA           CGCGTACCT GCAC AGGTACGCG            GTACGGCGCTCGGCG  95 192
CCO40_RS06970 1477441 .. 1477460 -    -8  -4.63218   TTCCTGTTAATAAAA            TACGTAAT AGCA ATTACGTA             ATGCTTTAACAGTAT  85 154
CCO40_RS06965 NONE
CCO40_RS06960 1476470 .. 1476485 -  -2.6  -3.42256   AGCGACGGAATAAGA              GCCTGAT GAA AT-AGGC              GCTTTAACCTCTCCG  46 74
        mnmC 1472201 .. 1472236 -  -6.9  -4.60924   CAAAGTCTGGAAAAA   GCGATCGGCGCCGGCGA ACTG TCGCCG-CGC-GATCAG    GCGTTAGTCAAAGCG  78 128
        smrB 1466993 .. 1467004 -  -7.2  -3.30124   TCGTAGGCTGGATAA                GGCG CTTG CGCC                 GCCATCCGGCAATTC  63 45
        fadL 1460590 .. 1460608 - -10.3  -5.33405   GGCAGTAAATAAAAA             GGTGAGC GCAAT GCTCACC             TTTTTGATCCGTTTC 100 50
CCO40_RS06875 NONE
CCO40_RS06870 1458004 .. 1458035 -  -8.9  -3.55761   CAGCGACTGGGTAAA      TGCGCATGATAATG ACGAA CACTA-CATGCGCA      AACTTACCTTCCGCG  68 427
        pgtP 1450769 .. 1450787 -   -16  -3.11072   GTCAGCGAATAGATA             GCGCCGAC AAT GTCGGCGC             TTCTGTTCCCCGGGA 100 52
        lpxP 1448839 .. 1448850 -  -7.2  -5.22137   AATGACAAAATAAAA                GGCC TTGC GGCC                 TTTTTCAGATGTAGA  91 30
        ypdK 1448341 .. 1448360 - -13.6  -4.28487   GAGTAGAAAAGCAAA            CAGGAGCC CCAT GGCTCCTG             TTTTTCTTTGCATTG 100 43
CCO40_RS06815 1443674 .. 1443729 -  -9.1  -3.61398   CCTGCTGCTCAACAA TGACGGCTATACCG-TAGAGCGCGCCA TTCA CGGCGCGGCCCAGCGGTATAAC-GACA TCGCGAGCTGGAACT  68 263
        mgrA 1441123 .. 1441134 -  -3.6  -4.07885   CATTTTTTGCTAAAA                CCGG CCCT CCAG                 AATAGCGTCAATTTC  57 8
CCO40_RS06800 1440628 .. 1440663 -  -7.7  -3.74227   ATAAAGACAGAAAGA   TAGCAGGCCCGATG-CG TGGG CGTCATCGGGC-TGTTA    TTCAGCAGGAGGCTT  71 39
        nupC 1437792 .. 1437809 - -12.7  -5.61596   AGCGGCATAAAAAAA             CCGGGGA TAGC TCCCCGG              TTTCTGCATTAAACC 100 46
CCO40_RS06770 NONE
CCO40_RS06765 1434190 .. 1434218 - -13.3  -3.82946   CCAGCTGAAACAGAA        TAAACGGCAGG GCAGACG CCTGCCGTTTA        TTATTTGTTAGTCCG 100 33
CCO40_RS06755 NONE
CCO40_RS06750 NONE
CCO40_RS06745 NONE
CCO40_RS06740 1432080 .. 1432094 -  -8.5  -5.24989   GCAGATAGCAAAAAA               GCGCC TTTAG GGCGC               TTTTTTACATTGGTG  95 36
CCO40_RS06715 1427528 .. 1427542 -  -4.9  -3.37522   AGGCCAGCGAATTAA               CCGCC GCGAG GGCGA               AAGATCCGCTGTATC  54 110
CCO40_RS06705 1425305 .. 1425319 -  -7.1  -3.18383   ACCGTGATTGATGAA               GCGGA AATGA TCCGC               TTACTGGGTGCCTGA  62 257
        cysZ 1421226 .. 1421251 -  -9.1  -3.10715   GTTATCAGTATGGAA         TAAGAGACAGC ATAA GCCATCTCTTA          TTTATACATTTTTAC  68 42
        cysK 1420089 .. 1420104 -  -6.8  -5.26316   GCAGGCCACAAAAAA              GCACCC AAAA AGGTGC               TTTTTTACGCGTTTT  87 54
        ptsH 1419476 .. 1419503 -    -2  -4.11692   GACTGATTTTTAAAA        GAACCCG-GAAAA AAA CTTACTCGAGTTC        CGCCATCAGTTTGAC  55 14
        ptsI NONE
         crr 1417129 .. 1417146 - -12.7  -5.50499   GTACAGGCAAAAAAA             TGGCGCC CAAA GGCGCCA              TTCTTCACTGCGGCA 100 45
        ptsJ NONE
CCO40_RS06645 NONE
CCO40_RS06640 1413287 .. 1413307 -  -9.7  -3.34344   CTACTTTTTAAGCAA            CAGATCTGC CTG GCAGGTCTG            TTGCATGAGAATAAC  74 82
        amiA NONE
        hemF NONE
CCO40_RS06570 1401112 .. 1401125 -  -9.5  -3.30124   TGGTAGCCCGGACAA               GGCGC GCCA GCGCC                GCCTCCGGGGAAGCG  74 153
         tal NONE
         tkt 1380202 .. 1380240 - -13.3  -2.63901   AGGCTACGAAGTAAT   TTTGCACAGCCTACAGA ACAGG TCTGCAGACTGTGCAAC   GTCTGTGTTGCTAAC  84 48
       pbp4b 1376308 .. 1376321 -  -8.1  -3.04144   GGTCGACGTTTAACA               GGCCT GATG AGGCC                AATCTTAGTATTGAA  62 301
        narQ 1372279 .. 1372292 -  -3.7  -3.57561   TGCCAACGCCGGAAA               GCCTG ACAT CTGGC                CTTCCGGCGATTTGC  53 47
        acrD 1368955 .. 1368975 -    -9  -4.78237   TAGGGGATAAGAAAA            GGCGACTC AACGA AAGTCGCC            TTTTTTGTGCCCGAC  90 66
CCO40_RS06425 NONE
        dapE NONE
CCO40_RS06415 1366543 .. 1366571 -  -5.8  -2.92714   TGGAAGAAAAAGCCA        GCGATGCCGAAC TGTGC GCCCGGCTACGC        ATTTCAGGCCGTAAA  51 181
CCO40_RS06385 NONE
         bcp 1359455 .. 1359467 -  -4.7  -3.16683   ACGTGAGGTGATTAA                CGCTC CCG GCGCG                GCAGGCGGAATGGGC  50 225
        bepA NONE
        arsC 1355919 .. 1355934 - -11.8  -3.12668   CCTGAAACTGTAATA              CGCCGC GACG GCGGCG               TTCAACGGTTAACCG  81 34
        purM NONE
        purN 1350968 .. 1350999 -  -4.4  -2.96152   GAAGGGAAAAGAGTA      GGCCGGATAGGCA TTTATGC CGCC-ATCCGGCA      AGCAGACGCAGTCCT  48 54
        ppk1 NONE
         ppx 1347193 .. 1347219 -   -18  -3.78022   CTGAGATTCAGTAAA         GGCAGACGCCGC GGC GCGGCGTCTGGC         CCACAATTTACGCGG 100 33
CCO40_RS06310 1344088 .. 1344108 -    -4  -2.89564   CGGCTATCGCAGAGA            TACTCACA CAGTT TGAGAGTA            CCGTACGTCAGTGCC  46 291
CCO40_RS06300 1342866 .. 1342885 -  -9.3   -3.2352   TAAAAGTGAATTTAA            CCCTCTG TTTTTG CAGAGGG             TTTTTATTTATGTGC  70 490
        xseA 1338035 .. 1338075 - -16.2   -2.5409   ATAACTGGTAAGTGA GCGACAAAACCGGGC-GGG TATT CCCAGCCCGGTTTTGAGGC  TAATGACAAACCGGT 100 144
        sseA 1298951 .. 1298963 -  -3.3  -2.59177   ATGGCAGATATTAAG                CGGGT TCA ACCGG                TAAATCGGTACGCGC  42 8
CCO40_RS06165 1297915 .. 1297930 - -10.4  -5.67967   ACCAGCACAAAAAAA              CCGCTC AATT GAGCGG               TTTTTTTGTGGCCTG 100 126
        timP 1297469 .. 1297494 - -14.7  -4.66318   ATCATCTGAAGAAAA         GAAAGCCGCCC AACA GGGCGGCCTCC          TGGCTTACCTGCTCT 100 30
        suhB 1287413 .. 1287438 - -16.9  -2.74784   ACGCCTGAAAAGGCA         CGGCGGATGAG TGGC CCCATCCGCCG          AAGAGACTTAGCGCT 100 33
CCO40_RS06100 1286413 .. 1286425 -  -5.5  -3.03028   AAATATGCATATATA                CAGCG TCG CGCTA                TTTAGCGGATAGCGC  52 23
        asrA NONE
        asrB NONE
        asrC 1282879 .. 1282902 -  -2.4  -4.82901   GGCGGGCCATAAAAA          GGTTACGC-GC GCT GCTACGTAAAC          CTGCCTTTATCGCTT  68 475
        csiE 1280321 .. 1280331 -  -2.4  -3.53012   TTCCTTCGGCCCAAA                 GTGG TTG CCGC                 GTCATGATTCCAGGA  47 27
        hmpA 1276184 .. 1276211 -  -6.9  -3.14527   GAACGGGGAGGAATA        CGGGCGTTCGC CTTAAC GATAACGCCCG         TTTTTTCAGCGGATT  59 49
        cadC 1274400 .. 1274439 -   -16  -3.14132   TTTCTTTGCGATGAA  CATGTTGCCAAAATTAAC ATAA GCTATTTTTGGCAACATG   TTCTTCACAAAATAA 100 95
        cadB 1272753 .. 1272767 -  -2.7  -3.53012   CTTGTTCCTGGTAAA               GTGGG CCCCT CCCGC               TACGCTATAGCAGGT  48 75
        cadA 1270560 .. 1270581 - -14.5  -5.00616   TGCTGCGTGAAAAAA           GGGAAGTGG CAAG CCACTTCCC            TTTGGTACTTATTTC 100 34
        dtpD 1269008 .. 1269018 -  -2.4  -3.62597   CGTACTGGCGAAGAA                 GACG ACG CGGC                 TATCTGATGTGCCGA  49 81
CCO40_RS06005 NONE
        mltF 1258657 .. 1258685 -  -9.4  -4.17132   AAAGCTCTGAAGAAA        GCCGACCGTGCG GAAGG CGCGGGGCCGGC        AGTATAGCGCAATGC  84 83
CCO40_RS05975 1254087 .. 1254098 -  -3.6  -4.07124   CAGGATTTACATAAA                GGCC GACT GACC                 GAAATCGACTATTTA  58 175
CCO40_RS05960 NONE
CCO40_RS05955 1250500 .. 1250511 -  -3.6  -4.10161   GATGAGCTGGGAAAA                CCAC GTTT GCGG                 CTGTGGGGCGAGGCG  60 248
        nadB 1238784 .. 1238814 -  -7.4  -3.21099   CCGCCTTATTACGAA       CCCGGTGTGGAATG CGC CACGCCGCAGCGGG       AGCAGGCGCGTTACA  59 336
        srmB 1236910 .. 1236931 - -14.5  -5.80817   TGGAAGATAAAAAAA           TGCCGGGTT AACG AACCCGGCA            TTATCATCACTCTTC 100 32
        eamB 1235290 .. 1235314 - -14.3  -3.94877   ATCCGGTAATAACAA          GCGGAAGAGGC CGG GCCTTTTCCGC          TTTTGTTTTATTTGG 100 42
         ung 1233830 .. 1233843 -  -9.5  -3.48276   CGCCCGGTCAGACAA               GGCGC TTTC GCGCC                GTTATCCGGGCGATA  75 60
        trxC 1232075 .. 1232095 - -14.7  -4.16943   TGGCAGAGGTGAAAA            CGGGGCACA AGA TGCGCCCCG            TGGCGTTTACAGCGC 100 32
        tapT NONE
         pat 1228580 .. 1228604 -  -2.1  -2.74269   TGCAGACGACATAAG          CGAGCAATAAT AAC ATCAGTACCCG          TTAAAGTGGTCAACA  40 56
CCO40_RS05835 NONE
        pssA 1227142 .. 1227158 -  -9.4  -4.66938   ACTCCTAAGAGAAAA              CCCCGT ACAGG ACGGGG              CTTCGATTACAGGAT  91 32
CCO40_RS05825 1226586 .. 1226599 -  -3.8  -2.74144   GCGGGATCCTGAAAG               CGGA GATGTT TCCG                GCGCAGGTTCGCGCC  43 223
        bamD 1213743 .. 1213762 -   -15   -5.8187   TACCGAATAAAAAAA            CGGCAGCC GGAA GGCTGCCG             TTTTGCTTGTTTGTA 100 46
        raiA 1213132 .. 1213147 - -11.8   -5.4505   CCTGTCAACAAAAAA              CGCGCC CGAA GGCGCG               TTGGCGATACACTCA 100 51
        pheL 1212953 .. 1212973 -   -14   -5.5112   GTTATCAATAAAAAA            GGCCTCCC GGTGG GGGAGGCC            TTCTTGTTCGTCTTC 100 49
        pheA 1211576 .. 1211592 - -12.3   -3.0497   AGAGCAGCTGGAAGA              GTACCGG TTG CCGGTAC              GTTGTCCGACGATGG  76 195
CCO40_RS05740 NONE
        dgcN 1206347 .. 1206369 -  -6.8  -4.30995   GCTTGTAGAAAAGAA           GGGGCTGGCA TTA CGCTGGCCCC           TTTTTTATGGGGTTG  74 119
CCO40_RS05705 NONE
CCO40_RS05700 1200329 .. 1200346 - -11.3    -5.252   GACGGCGATAAAAAA             GGCGAAC CGGA GTTCGCC              ATTGTGTTACTCCGC 100 32
CCO40_RS05695 1199132 .. 1199174 -  -2.7  -5.14563   CGCGCGATGAAAAAA TTGCGAATCTGGAAGTTCAG CTTG CAGAAGC-CCAGACTCGCGA ACGCGACACCGTGTT  79 478
        nadK 1197955 .. 1197983 -  -3.3  -3.92178   ATGACTGTAATTAAA        TACAGTATAAA CTGGTTT TTTATACAGTA        AAGAGGCTAACGTAA  55 43
        recN NONE
        bamE 1195467 .. 1195478 -  -4.4  -4.85782   CTGGCGAAAAATAAA                GTAG GTAT CTAC                 AGTCGTCCGGTAAAA  77 314
        smpB 1194171 .. 1194199 - -13.3  -2.53613   ATGAGATATGAATAT        TGACCAGCTTC ATACTGA GAAGCTGGTCA        CAAAAAATGTCTATT  84 39
        bapA 1182127 .. 1182144 -  -2.5  -3.14132   GGGCTTTTTTATCAA             CCGCCGG TTAT CAGGTGG              TTGTTCTGCAACAGA  45 4
CCO40_RS05650 NONE
CCO40_RS05645 NONE
CCO40_RS05640 NONE
        ssrA 1176805 .. 1176830 - -10.5  -5.49234   ACATGCAACAAAAAA         GCCTGCAACTC ATTG AAGTTACAGGC          TTTTTTAAGGTTCAT 100 62
CCO40_RS05625 1174684 .. 1174715 -  -5.8   -3.5365   TTAAATGTTACACAA      GCAACGTCCCCCTT GATT AAGGATAGCGTTGC       ATCAACCTATTGAAC  57 125
CCO40_RS05620 1173095 .. 1173112 -  -5.5  -3.36492   TCCCTAACCTGATAA             CCTCCGC TTAA GCGGAAA              TCAGCAGCCTACATC  56 145
CCO40_RS05610 NONE
CCO40_RS05605 1169150 .. 1169179 -  -6.5  -4.11394   ATGCCAGTCGGAAAA       GTGGGACAG ATTTAGCAACGG CTGTCCCAC        CCTGTACCACTTTTT  68 145
CCO40_RS05600 1167491 .. 1167505 -  -2.1  -3.36694   ATCCAGTCTGAAACA              CCGGTG ATAT CAC-GG               AGGCTGTTCATTGTC  45 33
CCO40_RS05595 1166594 .. 1166621 -  -9.3  -4.56597   TTTTTTTCTGAAAAA        TACACCATTTC GGTATT GAAACGGTGTA         TTTCGCTATTTTTTT  88 54
CCO40_RS05585 NONE
CCO40_RS05580 NONE
CCO40_RS05575 NONE
CCO40_RS05570 NONE
CCO40_RS05565 1162726 .. 1162751 -    -9  -3.18796   CAAAATCATATGGAA         CTGGCACAGGG AGCTA CCCTGCGCC-G         TTTGTTTAAACATCT  70 31
CCO40_RS05560 1160939 .. 1160969 -  -9.8  -2.87211   AGGCGGGGGCAGATA      TGCTGG-CGGTAC ACACAG GCACCGACCAGCA       GGCAGCAGGGCGCAA  65 316
CCO40_RS05535 1155217 .. 1155259 - -17.1  -3.95555   ATAATTATCCAGAAA TGCCGCCCGCAAAGGCTCGC TAAA GCGAGCCTTTGCGGGTGT-A GATTTTAATTGTTCT 100 315
CCO40_RS05530 1153564 .. 1153577 -  -3.9   -2.7736   AGTGAGATTCAATCA               GTATA CCCG TATAC                CTGCTCAATATATAT  45 5
CCO40_RS05525 1151427 .. 1151456 -  -4.9  -3.24755   ATTTGCCAAATAAAT       GGCCATACCTGTG AAAG CATCGTTATGGCC        CATATATTCGTATGG  52 86
CCO40_RS05515 1148440 .. 1148454 -  -2.8  -3.36803   TAAGCCGACGCAGAA               CGCT TTTATTG AGCG               CTTTAACCGAACATA  46 371
CCO40_RS05495 1142785 .. 1142802 -  -5.5  -2.78463   ACGCGCTGGATGACA             GCTTTGC TGAT GCAATGC              TGAAGCTATATGGGG  50 251
         hin NONE
        iroB 1137326 .. 1137357 -  -2.3  -3.01785   CGGTAAAAGATGAGA      TATGGCGAC-ACAC GCTGG GTTCAGCCGCCATA      TTGTCATTGCGCTGC  42 46
        iroC 1133583 .. 1133605 - -13.5  -3.77831   GTATCAATAGCTAAA           GCGGCTGTT ACAGG AACAGCCGC           TTGCGGGCTTTCTTT 100 64
CCO40_RS05465 NONE
CCO40_RS05460 1131054 .. 1131069 -  -3.2  -4.87291   TACGGCAAGCAAAAA              CCGC GAACACAT GCGG               AGTCGCGTAGTGAAG  74 285
CCO40_RS05440 1125440 .. 1125476 - -11.1  -2.56271   TGTTGATCATAACAT   GAGTG-AAAGCGACGGT TTAAT ACCG-CGCTTTTCACTC   GCAAGCCATTCTGTA  74 123
CCO40_RS05435 1124345 .. 1124375 - -11.2   -4.7254   AGGGTTTATGAAAAA       CCTGGGCGTAAAAA ACA TATTTACGTCCAGG       CTTTCTTTTTAGCAA 100 34
CCO40_RS05415 NONE
CCO40_RS05410 NONE
CCO40_RS05405 1117263 .. 1117293 -  -2.5   -2.6462   GAGTTATGGAAAGAG      TGATG-CTGGCGGGG TTG CCCGGCCTGGCA-CA      TGAGCGCGTAGGCCG  40 69
        glaH NONE
        lhgO NONE
        gabD NONE
        gabT 1111958 .. 1111969 -  -2.2  -3.30124   TTGTAGGCCGGATAA                GACA GTTA CGTC                 GCCATCCGACGCTGC  45 51
        gabP 1110440 .. 1110461 - -10.1  -2.57931   TTTACTCCTGAGAAG           CTTCCCGGC TGAC GCCGGGAAT            AACTAACGTAGGTTT  70 28
        csiR 1109386 .. 1109397 -  -7.2  -4.93288   AACATTTAAATAAAA                CGGG AATA CCCG                 ACGCTGATAAAGTGA  91 373
CCO40_RS05360 NONE
CCO40_RS05355 1107970 .. 1107989 -  -2.9  -2.94747   TCAGTCTACTACACA            CTT-ACCG ATGCG CGGTGAAG            GTACCGCTTAATGAG  42 33
CCO40_RS05350 1107492 .. 1107516 -  -3.5  -3.18912   CCATGGATTCAGCAA          TGCCGCGTTCT GCT AAAAAGCGCCA          GCCGCGTCCGGCAAA  47 248
        alaE 1106068 .. 1106092 - -15.7  -4.35675   AAAAAGCGACTAAAA          GCGCGACTGGC AAT GCCAGTCGCGA          CGTTAACTTATGCCT 100 33
CCO40_RS05330 1105111 .. 1105136 -  -3.9  -2.61695   GGCATGGCGAAACAG         GTCGCATGTCA GCTT CGACAGGCGAT          ACAGTAACCGTTTCG  44 116
CCO40_RS05320 1103047 .. 1103066 -  -6.3  -4.67635   TTTAAAATGAGAAAA            CGGCGCG ATGAAA CGCGTCG             GATTGTCGTGTGTTG  78 248
        nrdH NONE
        nrdI NONE
        nrdE NONE
        nrdF 1099137 .. 1099165 -    -9   -4.8269   GACAACCAGCAAAAA        TCCACCTGAATT GGTGG AATCCAGGTGAA        TAATCTCACTCGTAT  90 138
        proV NONE
        proW NONE
        proX 1095551 .. 1095584 -  -8.2  -3.12856   GAGAGATTGAATAGA     CCGGATAGCAGCGCA TGAAC TGCGCCT-TATCCGG     CATAAAAAACGATCT  62 40
CCO40_RS05280 1093813 .. 1093827 -  -5.8  -4.29621   GACAAATAAAGTAAA               TGTATT ATT AATACA               AAATCATTCTTTCAG  67 448
        mprA 1093152 .. 1093175 -  -7.4  -3.85817   ACCTGTTGTCAGAAA          GGCCAGCA GTAATGCG TGCCGGCC           TGTCCGCTTTCCTGT  68 73
        emrA NONE
        emrB 1090340 .. 1090355 -    -9  -5.14563   TGGTTTACTAAAAAA              GGGATC CGCA GATCCC               TTTTATCAGATAGTT  93 39
CCO40_RS22425 1077407 .. 1077440 -  -6.7  -3.57144   CCGGCGAGCTGGAAA     CCTTCCTGCTCATGG CGCG CGATGAGCAAGACGA      TCCGCTCAATCTGAA  60 522
        srlA NONE
CCO40_RS05175 NONE
        srlB NONE
        srlD 1073868 .. 1073889 -    -3  -2.52896   CCATCCGGCAATTCA           CGGTCA GAACATCACT TGACCG            CCGGTTACGTTGATC  40 7
        gutM NONE
        srlR NONE
        gutQ 1071461 .. 1071488 -  -9.1  -2.64155   GGCGCTGGAAACCGA        CGTCGCCAACC TGCATC GGCTGGCGAAG         CGTCTGGGACTGAAG  66 43
        norV NONE
        norW 1067202 .. 1067214 -  -4.7  -3.30124   TCGTAGGCCGGATAA                GACGC GAA GCGGC                GCCATCCGGCATCAC  52 45
        hypA NONE
        hypB NONE
        hypC NONE
        hypD NONE
        hypE 1051303 .. 1051341 -  -8.8  -2.99325   GCCTGATAAGCAAAG   CGCCATCAGGCGTTAATG CAG CGTTAATGCCGGATGTCG   ACGCAAATGCGTCTT  66 72
        flhA 1048847 .. 1048887 -  -9.6  -4.72272   TTTGGCGAGGAAAAA  CCCGCCTGTAAGCAGTGC CCGGT GCACTGCTATCAGCCGGC  TAAACGCGAGGAGAT  95 229
        sitA NONE
        sitB NONE
        sitC NONE
        sitD 1044864 .. 1044876 -  -4.8   -4.2711   ACAAAAAGAATGAAA                CGCT TTATG AGCG                ATTCGATAACAATGC  66 221
        hilD 1035803 .. 1035835 - -11.3  -4.81163   TAAATATGAATAAAA      TGCCGGCCTTAATCC ACA GGGTTAAAGCCGGAA      GGAGATAGTGTCATC 100 296
        hilA NONE
        iagB 1032809 .. 1032842 - -12.7  -4.05669   AAGCTGATAAAAACA     TAGCTTACTTTTAGA ACTA TCTGAAAGTAAGCTA      TTTCTGTATAATTAT 100 37
        invH 1009868 .. 1009885 -    -7  -5.95539   TCGCAAATAAAAAAA             GCAGCA GCGAGG TGCTGC              TGTATCAAAAAGCAG 100 179
CCO40_RS04835 NONE
CCO40_RS04830 1008721 .. 1008737 -  -2.3  -3.63054   GAAAGGTAGATACAA              CACATTA TTT TAATTTG              AAAAGTATATGAAAT  49 114
CCO40_RS04815 NONE
CCO40_RS04810 1006271 .. 1006288 -  -7.7  -3.34715   GATGTGCTTGAAAGA             TGCACGA TTTC TCGCGCA              ACACTTTATTGATTA  65 461
        pphB 1005057 .. 1005067 -  -6.8  -4.01902   ATATTGACGAAACAA                 GGCA AGC TGCC                 AGGCAATTAGTTCAG  68 401
        mutS 1001556 .. 1001573 -  -6.9  -3.34652   TGTCTAAACAATAGA             CAGGCGC TTCT GTGCCTG              AAAAAGGAAAGATCA  61 476
CCO40_RS04775  999329 ..  999366 - -10.6  -2.77416   AGGATTAAGACAGTA   TTATCC-GTCCGGGAGC GCAAT GCTCCCGGACTGGCTAC   GATGATGGGGCGTGC  74 22
        ygbI  992264 ..  992277 -  -9.5  -3.11459   AAGATGATGACGTAA               GCGGC TTGC GCCGC                TTCGCTATTGTTTGG  71 30
CCO40_RS04730 NONE
CCO40_RS04725 NONE
CCO40_RS04720  989395 ..  989414 - -13.6  -5.40072   CCCTTGTCAAAAAAA            GGCCAGTC TGTC GACTGGCC             TTTTTTTTACCGTTT 100 32
CCO40_RS22420  987062 ..  987077 -  -4.6  -3.34267   AAGCCGAAACGAATA              CCTGGA GTTT TCCTGG               TTATTCCCGGTGGGT  52 99
CCO40_RS04655  978232 ..  978255 -  -6.6  -4.60255   ACAAGGGCTGAAAAA          TGTTCCCCGC GCCA GCGGGGATAA           ACACGTTTCACCAGC  79 44
        sopD  966295 ..  966311 -  -9.4  -4.72272   TGCTGCTATGAAAAA              TCCGGC AGGCA GCCGGA              TTTTAAATTGGTTAT  91 180
        queD  961104 ..  961129 -  -4.7  -3.02043   AACGTCGTGTGAATA         GGCTGGA-ATCA ATC TGCCATCCAGCC         CACGCGTTAATAAAC  49 42
        barA  945810 ..  945824 -  -8.5  -3.30124   TTGTAGGCCGGATAA               GGCGG TCACG CCGCC               ATCCGGCGAATATCA  69 38
CCO40_RS04515  940044 ..  940063 - -10.7  -2.78679   TTTCCTGAGGTAAAT            CCCTCCC CCCTAC GGGAGGG             TACCTTTTCGTTTGC  74 148
        queF NONE
        ppnN  934873 ..  934899 - -13.7  -2.62425   AAGGAATGGGAGAAG         CGCCCGGCTGC TGGCG GCAACCGGGCA         TAAGCGTTAAGCGCA  86 32
        sdaC  933025 ..  933043 - -13.1  -3.61902   TTGTATCATAGAGAA             GCGCCGC GGTAA GCGGCGC             TAAAGGACTTAGCTG 100 34
        sdaB  931571 ..  931599 -  -7.5  -4.69053   CATCAGGCAACAAAA       GCCGGAT--GGCG GCGAG CGCCTTATCCGGC       CTACAGATCCTAAAA  82 52
         xni  930700 ..  930717 -  -5.5  -4.63932   CATCCGGCAACAAAA             CTACCGC GCCA GCCGTAG              CTGCTGTAAGTTTCC  74 8
        fucP NONE
        fucI  925032 ..  925046 -  -4.2  -3.94381   AGATAACTCCATAAA               CGCC GCCCGAT GGCG               CTACGCTTATCCGGC  57 96
        fucK NONE
        fucU  923142 ..  923160 - -13.1  -3.17212   CCATCATTCGATGAA             CGCCCGC GTCAT GCGGGCG             CACCGGCAAGAGATT  91 39
        fucR  922363 ..  922421 - -10.4  -4.88736   GACGAGCGATAAAAA CGCGCTGCCGTCATCAGCGCCGGAT-GGC GCAC GCTTATCCGGC-CT-ATGACTGCGGCGCA TCTGAAACAATATGC  93 10
        csdA NONE
        csdE  917204 ..  917228 -  -3.6  -3.15788   CCCCATAATATAAAT         GCCAGTACCAC AAAC ATGGTACCG-C          TACGCAGATATTTTT  46 317
        rarD  915966 ..  915977 -  -2.2  -2.79327   CGATCCGACGCAAAT                CCAG GTCG CTGA                 TTTGGCGAAAACCAT  39 381
CCO40_RS04385  913960 ..  913973 -  -8.1  -5.77988   ACAGATACAAAAAAA               CACCC GTAA GGGTG                TTCATTAAGTTGGTT 100 36
        argA  910956 ..  910969 -  -4.5  -3.32963   AGTCGTACCGGATAA               GACGA GTTC TCGCC                GGATGGCGACGCGTA  52 113
        mutH  891012 ..  891031 -  -9.2  -2.91199   GAAGCGGTAATTATA            GGCCCGTC GAGT GACGGGCG             AAAGCCCAGGCTGAA  67 149
CCO40_RS04305  890227 ..  890255 -  -9.6  -2.82263   AAGGAAATAAAGTGA       GTATTCGCTCCCC GGCG GGGGAGCGAG-AC        AGGATTACAGCGGAT  69 30
CCO40_RS04300  889768 ..  889778 -  -5.4  -3.34028   AAGGGAAAGTAAAAT                 TGCA GGC TGCA                 CGGCGTAATTGTTAC  56 119
CCO40_RS04295  888257 ..  888274 -  -5.5  -2.78596   GATCTTCTCATTACA             GCACGCA TTGC TGCCTGC              TTATGCCTTGTTGCT  47 392
        galR NONE
CCO40_RS04275  882470 ..  882504 -  -3.4   -3.2963   AGTACTGTTTGACAA    TGGACAGGCG-CGGC TGATCC GCCGTCGTCAGACCA     TTGAGGAGCTGTTAG  45 67
CCO40_RS04265  879978 ..  880002 -    -5  -3.65199   AATTTGCGATTGAAA         CCATCGTGCCG GAGG CGG-ACGATCG          GGCGCGTATCAATCA  58 244
CCO40_RS04230  872744 ..  872766 -  -3.4  -4.62708   AACACACAAAAAGAA           GCGCAATTTA CCA TAAATAGCGT           CAGTTGGGGGCGTTT  66 107
CCO40_RS04225  871444 ..  871467 - -12.5  -4.53303   GATTCTTATATAAAA          TAGCCGGGA GTTATA TCCCGGCTA           TCTTTTACTTTAGCC 100 35
CCO40_RS04215  870053 ..  870070 -  -4.9  -3.84985   GAGTAAAATACAGAA             TTCAGGCG GGA CGC-TGAA             TGTATGGCCTTTCAT  59 117
CCO40_RS04135 NONE
CCO40_RS04130 NONE
CCO40_RS04125 NONE
CCO40_RS04120  852554 ..  852585 - -20.4  -3.86346   GCACTTTGTCAGAAA      TCTGAGGCAGATAC GGAG GTATCTGCCTCAGA       CGGATGACGCCGTAT 100 73
         idi  844295 ..  844325 - -13.3  -2.88634   AAATAAGATGTAAAT      TGCCGGGTGG-GGC ATTA GCCGCCATCCGGCA       TCTCTTCGTTCAGGC  86 61
        fldB  837493 ..  837525 - -12.8  -3.02829   GATATCGCGCCAACA     CT-GACGGAACGGCG TAAA CGCGGTTCCGTCGAG      AGGGAAATACAGCGA  83 49
        ygfZ  835409 ..  835426 -  -9.1   -3.3514   ACGCATACCTTATAA             CCACGCC ATCT GGCATGG              CTTTGTGCTGGGCGG  66 205
        bglA  832731 ..  832756 - -13.3  -2.73007   AAGACTCGTTCAAAG         TGTTACCCGCC GACT GGCGGGTAACG          TGCAGGAGTTAAAGC  85 34
        zapA  821421 ..  821442 -  -8.1  -3.28791   ATTCTGTTTTCACAA           TCACTTTAC CATA GTAAAGCGA            AAAGTGTTATTCAAA  65 32
        ssrS  821222 ..  821242 -  -3.9  -3.35679   TGTCGCCAGTCAGAA            GGGGAATCT CCG AGATGCCGC            CGCAGGCTGTAACCC  50 7
CCO40_RS03960  820417 ..  820436 - -11.4  -3.71649   CGCTGAAACGGGAAA            GCCCCTAC CGAA GCAGGGGC             TCTAAAAAGGAAAGG  91 196
        argP  816617 ..  816633 -  -7.9  -3.84246   GTGCGAATGATGAAA              GCCGCAG ATG CTGCGCC              GGTATCCGCGCAGGA  68 412
CCO40_RS03910 NONE
CCO40_RS03905 NONE
CCO40_RS03900 NONE
CCO40_RS03895 NONE
CCO40_RS03890  807129 ..  807148 -   -15  -4.42619   TAATACGGCATAAAA            CGGGTCGC TTCG GCGACCCG             TTTTTTATTCTCCCT 100 30
CCO40_RS03880  804050 ..  804061 -  -7.2  -3.30124   GTGTAGGCCGGATAA                GGCG TTCA CGCC                 GTCATCCGGCACTGT  63 48
        metK  790874 ..  790892 - -12.4  -4.08546   ATCAGCAATGATAAA             GGCCAGCA GGG CGCTGGCC             TTGATAAGTACGGTA 100 80
        galP  789025 ..  789051 -   -21  -5.08601   GGACTGCAAGAAAAA         CGCTTCCTCCTG TGG CAGGAGGAAGCG         TGGAGGGATTAGTCG 100 34
CCO40_RS03800  788463 ..  788484 -  -5.1  -3.72695   AGTCCGCTCAGGAAA           GTTCCCGGA CGTT TCGGGAAAC            TACCCGGCGACCAGT  59 25
        endA  787616 ..  787632 -  -3.5  -4.11512   GCATAATAAAAAAAT              CCGCGTC ATG GCCCCGG              CGTTTGGCTATCCAG  57 74
        rsmE NONE
        gshB  785771 ..  785793 - -10.6  -3.51924   TTGTCACTCATATAA           GCCGTCTTTT GCC AAAGGACGGC           GGCCTTATCGGGCAA  81 138
CCO40_RS03780 NONE
        ruvX  784646 ..  784670 -  -2.2    -3.794   GTTGAAGGCATTAAA         CCA-GCTTATT GCCC AGTAAGCCTGG          CAACCGTGACCGCGT  51 66
CCO40_RS03760 NONE
CCO40_RS03755 NONE
        yggU NONE
CCO40_RS03745 NONE
        hemW  779448 ..  779472 -  -5.8  -3.73968   AAAGGCGTTATTAAA          TAATGCGC TTGCCGGCG GCGCATTA          ACCGCCACAGGTCGG  61 94
        mutY NONE
CCO40_RS03705 NONE
        mltC  772378 ..  772389 -  -5.8  -4.11751   ATGAATGTTTTAAAA                GGCA CATT TGCC                 GTTGTGATTTGGTGT  65 189
CCO40_RS03695  771019 ..  771070 - -14.7  -3.51708   TATGTTTTAAAGTAA CGTTGCCTGCAGGCCGGATAAGGCA TTTA CACCTTATCCGGCCTGC-GA-AACA GGGCAAGGATTAATG 100 35
CCO40_RS03685  767651 ..  767672 -  -3.8  -2.71364   CTATCCGGGCAACGA           GGCGCATTA AACCG TAAT-CGCC           TCGCTTCGTCAACGA  45 104
CCO40_RS03680  767178 ..  767198 -  -3.3  -2.95177   GCGCAAAAAATTAAC            CTCCATC AGCAAGA AATGGAG            TTCGAACCAAAAGCG  42 397
        ripR  762985 ..  763010 -    -7  -3.53811   GTGACCCCCTGGAAA         CGCATAATCT CGCAGC AAATTATGCG          GATAAAGTGAAAATA  60 268
CCO40_RS03640  758986 ..  759002 -  -7.2  -3.67402   ACAATGGGGAAAAGA              CCCGCA ATTGA CGCGGG              TTAAAAAGCACGCTT  67 41
CCO40_RS03615  753269 ..  753281 -  -7.7  -3.08312   AACGCAGCGAGCGAA                CCTGA TAA TCAGG                CAGACAGTCCACCTT  62 79
        uxuA  746447 ..  746471 - -16.5  -3.62275   ATTGAGTAGGGGAAA          TCGCATGACGC GTC GCGCCATGCGA          AAGAAGGTTATTTGC 100 33
CCO40_RS03580 NONE
        uxaC  743162 ..  743172 -  -3.2  -4.65263   ATTTGTTAAAAGAAA                 CCAC ACT GTGA                 AGTCATAAGTTATTA  66 325
        yghU  738455 ..  738487 -  -7.8  -2.76468   CATCAGGGAATACCA     TGCCGGATGACGACA TTAC TACC-CCATCCGGCA      TTATGGTTTAACTTT  60 33
CCO40_RS03485 NONE
CCO40_RS03480  725255 ..  725272 -  -2.7  -2.91681   CTTTAAGCGTAGACA             CTTTTAC TACC GTAAGAG              GGAGAATCAGAACGA  42 89
CCO40_RS03475  724281 ..  724308 -    -7  -3.03124   TTTTATTGCCTAAGA        TGGCGC-CTTGCG TAA CAGAAGTGCGCCA        TCGTAATCGACTTCA  58 45
        metC  721559 ..  721587 -  -4.5  -4.20516   CCCGGACGCAACAAA        CGCAGACTTTTCC ACG GAAATTGTCTGCA        TATATGTCCATCCCC  64 48
CCO40_RS03455  720777 ..  720804 -  -5.6  -2.60392   CACGGGTCAACGAAG        CGTAACCGGGCCA TCC TGGCC-GATTATG        GATACGTCAGGCGTT  50 32
        yqhD NONE
        dkgA  717518 ..  717537 -   -15  -5.72207   TCGAAATGAAAAAAA            GCCCGACG ACAT CGTCGGGC             ATGGCGTGCGATAAA 100 47
CCO40_RS03430  715004 ..  715018 -  -7.2  -2.73334   ATTAATTATATATTA               CCTTAA TGA TTAAGG               CATGATGCTTTTATA  58 415
CCO40_RS03415  711185 ..  711203 - -12.4  -3.56821   ATTACATCCTGTAAA             GGGCAGGA GAA CCCTGCCC             GGCAGATTTACATAT  93 33
CCO40_RS03410 NONE
CCO40_RS03405  709303 ..  709317 -  -7.1  -2.73124   CTCGATTGGGCAAAT               GCTGG TGAAT CCAGC               GTCGTAAAGCGTCCG  58 77
        qseB NONE
        qseC NONE
CCO40_RS03365  700304 ..  700316 -  -4.1  -3.10894   AGGATGACCAGTTAA                GCAAA AAT TTCGC                TCAGATGCTTGCGAT  47 9
CCO40_RS03360  699767 ..  699780 -  -2.3  -4.15044   CTGCTGGCGAAGAAA               CGTTC TGAA GATCG                ACGCAACTGGCTACA  56 199
        tolC  693681 ..  693738 - -22.9  -2.78384   CGCGGCTTTATGACA GGTAGCGCCGCGCTTACCAGACCTACA AGGG CACAGGTCTGATAAGCGCAGCGCCAGC GAATAACTTATCAAT 100 36
CCO40_RS03325 NONE
CCO40_RS03320  691656 ..  691685 -  -8.5  -2.71681   TAAGGCGCTGAATGA       TTGCCCGATG-GCG CTA CGCGCATCGGGCTT       ACAGGAGAATCTATC  64 36
        zupT  689672 ..  689685 -  -2.5  -3.61178   TTTAGTGATGTTAAA               TTTTA AGGG TAAAA                AGGATGTTTATTGCC  50 272
CCO40_RS03305 NONE
CCO40_RS03300 NONE
        dsbI  686065 ..  686090 - -15.5   -4.3898   ATTATTGTGAGAAAA         GCAGAGGCCTG AATG CAGACCTCTGC          TTTGGTTTATCTATT 100 45
        ubiK  684528 ..  684545 -  -8.3  -2.64243   TCAGATCTTATATGA             GCGGGCC GTCA GGCCCGT              TCACGTTTTTACTCT  63 34
CCO40_RS03275 NONE
CCO40_RS03270  681654 ..  681675 - -13.7   -5.9667   AAAAAGATAAAAAAA           TCCCCGGCC TTAT GGCCAGGGA            CAGGAGATATAGCGG 100 45
CCO40_RS03265  681360 ..  681382 -  -9.1  -3.94051   AAAGTAAAGGAATAA           GGGTGAGAG GGGAT CTCTCCCCC           CTCTGATTGGCTGTT  79 24
CCO40_RS03245 NONE
CCO40_RS03240  673294 ..  673337 -  -6.6  -3.28712   TTGTCGGTCTGATAA GCGCAGCGCCATCAGGCA ATTTATCG TGCCGGATGGCGTTTAGC TGGCGGGGTTCGGGC  61 21
        plsY  670993 ..  671015 - -11.2  -3.97406   GTAAAAGCGGAGAAA           GGGGGCGACA TCA TGCCGCCCCA           ACGGGTTTACAGCAA  91 242
        rpsU  669449 ..  669475 - -10.9  -4.40882   CATAAACGAAAACAA        GCCGCGCATTCC TTTC GGAA-GCACGGC         CTTACAACTACAACT  90 75
        dnaG NONE
        rpoD  665510 ..  665527 - -14.1  -5.60993   GGCCTGATAAAAAAA             CGCCGCC TTGC GGCGGCG              TTTATACGTGTGCGG 100 45
CCO40_RS03185  664669 ..  664688 -  -7.8  -5.38054   TGTCAGAAACAAAAA            GGCCACTC TTTA GAGTGGCT             TAATTATATGATTTT  95 53
CCO40_RS03175  662943 ..  663001 -  -5.3   -4.2349   GCGTTACATTTAAAA GAGCTGG-TTAA-CGTGTTCCGCGTCCGC GAA GAGGACACGCAGCCCGCTTAATCCAGTTC GGCGATTTCCAGCGC  65 14
        ygjG  657678 ..  657703 -  -8.3  -2.78211   ACCCGGGGAAAACAG         GCCGGATAAGCA CAG CGCC-ATCCGGC         ATCGTTTTTAAACCT  64 33
CCO40_RS03155  655442 ..  655491 -  -9.3  -3.29144   GGACGCCGTCGATAA GGCGCTCAAGCGTCATACCGGCCT ATA AAACCGGTATGACGGCATAG-GCC CGATAAGCGCAGCGC  71 56
CCO40_RS03145  653620 ..  653635 -  -3.2  -2.88427   AATACCCTCTACAGA              TCGTCA TCCT TGACGT               GGCGGCAGGCAATGA  44 112
CCO40_RS03140 NONE
CCO40_RS03135  651546 ..  651571 - -15.5  -6.79027   TGCAAAAAAAAAAAA         CGGCTAACGCC GAAT GGCATTAGCCG          CTGCTTTTATGCATA 100 245
CCO40_RS03130  650490 ..  650516 - -15.2  -5.28942   CATGTTAAACAAAAA         CGCCCGACAG GTGTGCG CTGTCGGGCG         TTTTTGACGGGGCAG 100 59
        sstT  649063 ..  649075 -  -6.2  -3.08133   CACTTAGCTACGCAA                GGCG TTATT CGCC                AGACGTTCGTCCTCT  56 1
CCO40_RS03120 NONE
        mzrA  647515 ..  647526 -  -4.4  -4.16371   CATTAAACAATGAAA                TCAC CAAA GTGA                 GTGATATGATTCGGA  64 51
CCO40_RS03110 NONE
CCO40_RS03105  646693 ..  646705 -  -4.1  -2.57683   AGAGTCCGCCATAAT                TAACG ACG CGTCA                GCAGTACGCCCAACA  44 12
CCO40_RS03100 NONE
CCO40_RS03095  645941 ..  645978 - -20.7  -4.45485   ACGATATGCATAAAA   GTATCGCGCCACCAGGT GATA ACCTGATGGCGCGATGC    TATAAAAGAAAAGAT 100 42
CCO40_RS03090  645322 ..  645341 -  -6.4  -4.50976   CTTCAGATGACAAAA            GCGAGG CGCTATTC CCTCGC             TTTTTTAATTGAGTA  76 49
CCO40_RS03085  644288 ..  644305 - -12.7  -3.73647   GGTATTTATTAATAA             GGCGTCC CGGA GGACGCC              TGAAATTAGCCAAAG 100 31
CCO40_RS03080  643805 ..  643819 - -12.8  -4.07568   CGCGGCGCTTTAAAA               GCGGCG CCG CGCCGC               CATCAGGAAAAACGT 100 28
CCO40_RS03070 NONE
CCO40_RS03065  641787 ..  641809 -    -9  -3.99374   GCGCATTAATAATAA           CGCCCCGGCA TGA CGTCGGGGCA           GCGTGTTGCCCGATG  79 109
        garD  623526 ..  623543 -  -7.7  -4.46493   TCAAACATATGAAAA             CATGGCC CTTA AGCCATG              TTTTGCGAGGCGCTT  82 52
CCO40_RS02985 NONE
        pfkB NONE
CCO40_RS02975 NONE
CCO40_RS02970  617140 ..  617163 -   -16  -4.72272   CTTTGTCATGAAAAA          CCGTACCCGC CGGA GCGGGCACGG           AGGAACAAATGAAGG 100 41
        gatZ NONE
        gatA  615236 ..  615254 -  -2.3  -3.80461   CAATTTATTATCAAA             CCTGGAC GCACT GCTCAGG             CTCAAGGATGGTTTC  51 2
        gatB NONE
CCO40_RS02950  613511 ..  613538 -    -4  -3.15427   AACATTCTCCAGGAA        GGTGAGGGGAGC GATT GCTCCCCTAAAA         TTAAGAGGCGATTTG  48 26
        gatD  612420 ..  612448 -  -4.5  -4.06903   AATTTCGAAAGGAAA        TGTGAGCCAGC GCAGGTT GCTGGCTCGTA        CCATCAGGAAAGTTG  61 29
CCO40_RS02940  611352 ..  611364 -  -6.3  -3.96148   CGCTGGCAGCAGAAA                TTCAC GGC GTGAA                GAAAAATGCGCTGTA  65 229
CCO40_RS02930 NONE
CCO40_RS02925 NONE
        diaA  607483 ..  607494 -  -4.4  -2.71731   TGTACTCCTTAATCA                TCCT GGTG AGGA                 AAAAGCGTGTTATCG  47 7
        dolP NONE
        yhbO  605159 ..  605175 -  -2.1  -3.90744   TGGCTGGCGAAACAA              CACGTGG TGA CCTGGTG              CGTACACCATGAGGG  52 390
CCO40_RS02895  604624 ..  604634 -  -2.4  -2.87211   ATCCGGCGTTATATA                 GCCG CTT CGGT                 TTTGAACTGGCCGCA  40 153
CCO40_RS02880 NONE
CCO40_RS02875  601578 ..  601603 - -14.1  -3.24926   GACGGCAAAAACAAT         GCCCGAT-AGCG CTG CGCTTATCGGGC         CTACGGGAGCGCTAT  95 77
CCO40_RS02870  600108 ..  600118 -  -2.4  -4.07568   TGGGGCGTTTTAAAA                 CGGC GCT GCTG                 ACTTTCCTGCCGCCG  56 377
        argG  584863 ..  584878 - -11.8  -5.29782   GATATTCACAAAAAA              GGCCGC TTTC GCGGCC               TGTTGCATCAACGAC 100 47
        yhbY  577285 ..  577299 - -12.8  -5.13137   TAAAGAAAGGAAAAA               GGCCGC ATA GCGGCC               TTTTATCAACGGAGA 100 118
        dacB  574996 ..  575015 - -16.4  -3.41587   GCCTACAAAAGCCAA            CGGGCCGC ATTT GCGGCCCG             TTTTATTATGTTCGT 100 89
        ispB  570855 ..  570870 -  -6.1  -2.79023   GAACGGCATTAACGA              TCGCG CTGCAC CGCGA               TGTGTGCGAGACCGA  53 3
        sfsB  570290 ..  570313 -  -9.6  -3.63515   CTGTACGCTGAATAA          CCCCCGCGAAC GCG ATT-GCGGGGG          TTGTTTTACAGACAC  77 41
CCO40_RS02685 NONE
        kdsD  563225 ..  563240 -  -4.6  -2.62616   TGAGTTTCTACACGA              CGCCTG CACG CAGGAG               ATCATGCATATGTAA  46 2
        kdsC NONE
        lptC NONE
        lptA NONE
        lptB NONE
        rpoN NONE
         hpf  558958 ..  558984 -   -13  -3.92522   CGCTAACTGTACAAA         TGGCCCGTTGTG TCA CACAACAGGCCG         TCCTGCACTGGCTAA 100 53
        ptsN NONE
        rapZ NONE
         npr  557003 ..  557016 -  -2.5  -4.58283   CAAGTCCTGGAAAAA               TTTAT TCAC ATAAA                TTTAGTATGGACAAA  63 243
        yrbL  556173 ..  556184 -  -7.2  -3.30124   CCCGATTCGCTATAA                GGCG AATG CGCC                 TTCCGGCTATGTGCG  59 194
        gltB NONE
        gltD  544707 ..  544747 -   -11  -2.52519   TGAGGAGAGGAATAT CGGCTCCCCAGCCATCAGC CAAG GCAGTAAGC-GGGGAGCCG  GAAGGGTTACACTTC  74 32
CCO40_RS02595  543390 ..  543405 -  -3.2   -3.1811   GTTCTCAGAATAAAG              CAAACG TTTT CGTGTG               ATATTTTTTTGATAA  46 64
        codB NONE
CCO40_RS02585  540357 ..  540368 -  -7.2  -3.96327   AGGCCGCAGGAGAAA                GCGC CGGG GCGC                 TATGAATTGCAGGGC  71 465
CCO40_RS02540  533699 ..  533712 -  -9.5  -5.08824   CTGTTAGCGAAAAAA               CCCGC TTCG GCGGG                TTTTTTTATGGGCAA  93 0
        zapG  530764 ..  530782 - -11.7  -3.13082   GGAAAGATAGAGAGA             GGGCGCA AGCGA TGCGCCC             GATAAATTTCTTAAC  83 50
        degQ  529241 ..  529270 -  -7.9  -3.11192   CATACCATGAGTTAA       CCGGACATCA-CAT CGC AGGCTGATGCCCGG       TTTAAGACAGGATTA  62 38
        degS  527887 ..  527904 -    -7  -4.07568   TGGTCGCCTGGAAAA             GCGCAT CGCAGT ATGCGC              GTCAACAGGCGCAAC  70 241
        argR  517537 ..  517563 -   -13  -2.73099   GAGAGGACAAAAAGG         TGCCTCCGCCGT ACG ACGACGGAGGAA         GTGGGACTAAAGCTC  85 32
        yhcN NONE
      yhcN-B  516527 ..  516545 - -13.1  -5.47914   AAAAAGCATAAAAAA             GCCCCCG ACAGG CGGGGGC             AAGTCGTCGGGTTAG 100 52
        aaeR  511719 ..  511773 -  -8.1  -3.32844   GGCGGCACCGCATAA CTGTCCGC-CTTATCAGGCCTGTGGTG TGTGC CGCC-CAGGCCTGATAAGCGCAG-C-G CCACCAGGCAATGTC  65 93
CCO40_RS02375  497963 ..  498016 -  -9.1  -2.94099   CTTTTTCATCACAGA CTCCCGGTC-TACTCACCACAACAC AACATG GCG-TGTAGTGAATATGACAGGGAG TGTGTCAATGTGTAA  67 88
        msrP NONE
        msrQ  496201 ..  496213 -  -3.3   -4.4078   TTCTGCGAACGAAAA                TCGCC GTT GGGGA                ATGTAAAGTCGCACA  62 164
        accB  495478 ..  495505 -  -2.7  -3.09803   CAATTTTATCCAACA        TGTTCGCC-TCG TTACT CGATGACGACCA        GTGGCTCGTCAAATT  43 9
        accC  494093 ..  494109 - -10.8  -5.72622   CCCAGAAATAAAAAA              GGCCGG ATTCA CCGGCC              TTTTGAGATTAACGT 100 45
CCO40_RS02350 NONE
        panF NONE
        prmA  491415 ..  491434 - -11.4  -4.36914   GTTGTGTGGAGAAAA            GCGTGGCC GGGC GACCACGC             TGACAAGAATTATTT  93 35
CCO40_RS02335  490911 ..  490925 -  -2.2  -4.60746   TTAAAAACAGCAAAA               TAAATT TAT AATTCA               GTAAAATCATAGGGT  64 149
        dusB NONE
         fis  489440 ..  489465 -  -8.2    -5.252   GATGCGTATAAAAAA         GGCGCTTCCC CATGCC GAGTAGCGCC          TTTTTAAACAAGCAG  91 55
        yhdJ NONE
CCO40_RS02315 NONE
CCO40_RS02310  486008 ..  486024 -  -5.1  -3.89756   ATGCCAAATGAACAA              CAGGC GGAAGAA GCCTG              AGATTATTTTGAGTT  61 29
CCO40_RS02300 NONE
CCO40_RS02295  480641 ..  480656 - -10.4  -4.58395   CGTACCGTTTAAAAA              GGCGTC CGAA GACGCC               TCTGTTTACCGGTTA  89 38
CCO40_RS02290  480185 ..  480201 - -15.1   -3.6959   ATATTATTACTGAAA              GCGCGGC ATT GCCGCGC              CTGCATGTATCATTT 100 35
CCO40_RS02250  472885 ..  472895 -  -6.8  -3.18912   CGAGCCAGTGATTAA                 GCTG CTA CAGC                 AGGAATTATTAGCGT  59 272
         def NONE
         fmt  467735 ..  467753 - -10.2  -5.54907   TGTATAAAATAAAAA             TGCCCGGT AAC ACCGGGCG             TATAAAGACGTGATC 100 42
        rsmB NONE
        trkA  465006 ..  465024 - -11.7  -4.90917   AAAGGGAATTAAAAA             GGGCGCT GAATG AGCGCCC             CTTAAATTAGAGGAA 100 32
        mscL  464420 ..  464471 - -10.3  -3.09933   CGGTAATCGAGGGAA CTGGGAGGCCAGTGGCAAGAAAGT AAGTA ACTTTTTTACCACTGGCCTT-CTG CTTATTAAGAACGGT  73 30
        hopD  448792 ..  448806 -  -4.3  -3.65415   GCAATCACAAATTAA               GGTTA CCGAT TAACC               GTCTGGAAAGAAAAC  55 20
CCO40_RS01975  440025 ..  440039 -  -8.5  -5.24531   ATCGGGCACAAAAAA               GCGGG TTATC CCCGC               TTTTTTTTCGTCTCA  95 38
CCO40_RS01950  434420 ..  434439 -  -2.1   -4.6635   AAATGGCGAATAAAA            TAGCCTA ATGGGA TAGGCTC             TTAGTCGTTCTGCAT  64 26
CCO40_RS01945  433886 ..  433897 -  -5.8  -4.95896   AGAAAGCGAGAAAAA                CCAG CAAG CTGG                 CGGTATTTACTTGTT  83 184
CCO40_RS01935 NONE
CCO40_RS01930 NONE
CCO40_RS01925  431072 ..  431082 -  -2.4  -3.02144   CGAGCGCCGGGAAGA                 CGCG CCG CGCC                 TGTTTACGCACATTA  42 285
         crp  429869 ..  429890 -    -8  -5.30616   CGATGCAAACAAAAA           TGGCGCAT GATAAA ACGCGCCA            TTCTGACGGAATTAA  91 37
CCO40_RS01910  427687 ..  427697 -  -8.2  -2.61216   CCATGAAGGAATGCA                 GCGC TTT GCGC                 AGGCGGTAGGGAAGG  56 94
        tsgA  422896 ..  422908 -  -6.9  -3.30124   CTGTAGGCCGGATAA                GACGC ATC GCGCC                GCCATCCGGCAAGGA  61 44
        nirB NONE
        nirD  419715 ..  419735 - -12.5  -5.10077   AAATACGTCAAAAAA            GGGGAGGCG TTG CGCCTCCCA            AAAATAATTAACCGC 100 33
        nirC NONE
        cysG  417335 ..  417359 -   -13  -4.12188   CGAGTAGTTGTAAAA          TAAAGCCCTG TTATT CAGGGCTTTA          TTTTAATTAATAATT 100 32
CCO40_RS01855  411093 ..  411114 - -14.5  -4.69664   GATATGATTTAAAAA           GGCCGCTTA ATAA TAAGCGGCC            TGTATTAGTGTTATA 100 54
CCO40_RS01850  410737 ..  410751 - -11.4  -5.42862   AGACCTGTAAAAAAA               CCGGGA AAA TCCCGG               TTTTTTTGTATCTGC 100 54
        mrcA  397655 ..  397668 -  -9.5  -5.66338   AAACACAATAAAAAA               GGCGC CGGA GCGCC                TTTTTTGATCAGAAC 100 34
        igaA  394521 ..  394555 -  -9.2  -3.18274   TCCAGGGTAACGCAA     TTTGCGCGACAGGGTA GCA TACCCTGTCGCACGGC     GGCGCTATCAGATGA  70 33
        yrfG NONE
        hslR NONE
        hslO  392430 ..  392477 - -11.5  -3.86346   GGATGGCGGCATAAA TGC-CTTATCCGGCCTACGG AGCGGGATG CTGTAGGCCAGATAAGCGCA GCGCCATCAGGCAAT  91 63
        pckA  388622 ..  388647 - -13.4   -3.4799   ACAAAAGAGGCATAA         GAAAGGGAGG TATTAC CCTCCCTTTC          TTCTCAACGCCGGAT 100 74
        greB  385819 ..  385833 -  -3.4  -2.60032   TGGCTGGCAAAAATG               CCAGCC ATC AGCGGG               GGCTTAGGATTCTTC  42 46
CCO40_RS01730  383382 ..  383415 - -13.1  -4.14739   GGACGTATTGCAAAA     TCGCAGGCCGGATAA GAAG TAACCCGGCCTGCGT      ATTACCCGATTAGCG 100 35
        feoA  382767 ..  382779 -  -4.1  -3.14602   CTCACTGTATTAACA                GGAAA CCG CTTCC                ACTTCTATTAACGCC  48 7
        feoB NONE
        feoC  380091 ..  380120 - -15.1  -4.23054   AGACATGACGCAAAA       TTGCCCGGCA-GCG TGA CGCGTACCGGGCAA       CATAACGCGGAATAA 100 80
CCO40_RS01710  378583 ..  378606 -  -3.9  -4.63218   TGGCCGGGAATAAAA          CCGGAAATCC TCGGC GGATT-CCAG          CAGCAGCTTAGCGAC  69 445
        gntX NONE
        nfuA  376820 ..  376846 - -12.3  -2.68823   GGTGGGGCAGATAAG        GCCCGACAGGCG CAAG CGCC-ATCGGGC         ATGGATGCGGGGAAA  81 44
        gntT  375054 ..  375079 - -17.7  -3.62255   GCGAAGAAGAAGTAA         TAAAGCCGGGG ATTT CCCCGGCTTTA          TGATGGTGAGAGCAC 100 118
        malT  366932 ..  366949 -  -4.1  -3.21465   AAGGGAAATTGAATA             TTCGGGA CAGT TCCAGAA              AGATGTAAAACGGGC  47 348
        rtcR  360267 ..  360287 -  -2.6  -3.60971   ACGCTAATGGCGAAA            GAGGAT TTTCGTATT ATCCTC            GCCGGCGGTGAACTC  47 364
        glpD  356811 ..  356828 - -12.7  -4.08767   GGTATGTGGCGAAAA             GGGCGGT ATAA ACCGCCC              CGGATTTTATTACGA 100 35
CCO40_RS01605 NONE
CCO40_RS01600  350064 ..  350085 -  -9.3  -4.11692   TATTGATCCTTAAAA           CAGGCGAGC CGTA GCCCGCCAG            GGATATTATTTAAGC  80 31
CCO40_RS01595  349107 ..  349136 -  -8.6  -5.27335   GTGCTGAAATAAAAA       GAC-ATAGCGGGC AAGAA GCCCGCTTTCGTC       ATCGCTTAAAGTCCC  95 31
CCO40_RS01555  336813 ..  336825 -  -3.3  -2.64155   TGTTCGGTAAATTTA                CCGGC GCG ACCGA                AGCGCAGACGTTAAA  42 36
        yhhY  330776 ..  330787 -  -2.2  -2.72152   GTCACCATAAAGTGA                TGGC AGAA ACCA                 AAAAAAAACAAAAAT  40 210
CCO40_RS01520 NONE
CCO40_RS01515  328688 ..  328707 - -10.8  -4.41548   TTATATTTTATAAAA            GGAGTAAC TTTC GTTACTCC             ATTGTTTTTTATTTT  90 34
CCO40_RS01510 NONE
CCO40_RS01505  326453 ..  326464 -  -7.2  -4.37092   ACTGCGGGTAGAAAA                GGGC TTCA GCCC                 CGATACGCTAAAGTT  77 221
CCO40_RS01495  324228 ..  324261 - -14.5  -2.72991   GTATACCGTCAATCA     GCCCCAGCG-GGCGGC AGA GCTGCTGCGCTGGGGC     GTGGATTGTATCTGC  83 95
        panM NONE
CCO40_RS01425  312582 ..  312613 - -10.8  -3.06796   GGCTACGTTATTCAA      CCCCGGTTACTTAC TTAT GTAAGCTCCCGGGG       ATTTCATAACTTGCC  76 29
        rsmD NONE
CCO40_RS01390  305530 ..  305546 -  -6.5  -4.58283   CAACGGCGGGAAAAA              GCCGC TAATGAG GCGGC              GCCGTTACAGCAAAA  78 312
CCO40_RS01380  304638 ..  304657 - -12.2  -2.95223   TAACCGGAGGATACA            CTCTGGAG TCGA CTCCAGAG             TCAAGCGCTATTATT  80 40
        zntA  302360 ..  302382 - -14.8  -3.30007   AATATCGCGGGATAA           CCCGGCGACA CGA CGCCGCCGGG           CGGGAGAAGATTAGT 100 36
CCO40_RS01370  300354 ..  300377 -  -6.7  -2.73542   CTGAACCGGTAATGA          TGGTGCGCA AAACGG TGCGCAACA           TGCAAACTGGCGAAA  52 198
CCO40_RS01360 NONE
CCO40_RS01355  298771 ..  298798 - -14.1  -5.40072   TGGCGCTTAAAAAAA        CGGCCTCCGTC TGCACT GCCGGAGGCCG         CATCATCATCGTAAA 100 43
CCO40_RS01345  296351 ..  296365 -  -2.8  -2.57344   CACTTTTCCCAGAAC               GATCTG GTA CATATC               AGGACCAACGTTGCC  40 74
        acpT NONE
        nikR  295169 ..  295183 -  -2.8  -4.83615   TACGCTTCAGAAAAA               CAATTG GCA CAATGG               CGTAAACATTATTGC  68 133
        pitA  286899 ..  286920 - -13.7  -5.28481   CACTGAATGAAAAAA           GCGGGCCAG TTTC CTGACCCGC            TTGTGTTAGATAAGC 100 135
        uspA  285619 ..  285636 - -10.5  -4.99043   GGGGGATAAACAAAA             CGCCCAC ATAA GCGGGCG              TTGTTGTTGATAGCC  93 121
        dtpB  283739 ..  283777 -  -3.8  -3.53012   CGCGTGGTGGTTAAA  CGTCCCGATTATGCGCC GCCGCT GGCGGATG-TCGCGACG   CCCAACGCCATCGTC  51 183
CCO40_RS01275 NONE
        gorA  276885 ..  276897 -  -2.6  -3.59979   TTCCCGCACCGGAAA                CGGC GTCGT ACCG                TTGGATAAAGGGCAG  47 201
CCO40_RS01240  269741 ..  269762 -  -5.9  -5.60689   GCAGACAATAAAAAA           TGGCTGA AAATTCAG TCAGCCA            TTTATGATGCGATTC  93 58
CCO40_RS01230  267078 ..  267092 -  -4.2  -4.64992   GGCAAAAAATAGAAA               GCGC GCCGGAT GCGC               TGGTCATGCTGGATA  71 489
CCO40_RS01220  265414 ..  265432 -  -2.2  -3.06515   GTGGATGCTGAAAAT             GCGGCTAC TCT GCGGCCTC             TTTAATGGTTTCAGT  42 11
        yhjD  264281 ..  264294 -  -3.1  -2.72661   CAGTAGGCCGAATGA               CGACGC CGT GCGT-G               CCATCCGGCAGCAAG  43 48
CCO40_RS01210  262616 ..  262639 - -18.2  -2.66326   GTAACGTGAAACGTA          GCGCCGGATG ACGC CATCCGGCGC           CCTATTACAACGCCT 100 30
CCO40_RS01195  258441 ..  258466 -  -7.5  -2.92389   GAAGTGACGGAGACA         CCGGCGGCA CAGTAAGC TGCCGCCTG          TCGGCCCGGTAAGCG  59 68
        bcsE NONE
        bcsF NONE
        bcsG  238623 ..  238665 - -12.7  -4.78848   GCTGGAAAGAGAAAA CCCCCG-CACGTTGACTGGT ATAA ACCTGGCAACCTGACGGGGG CTAACTTGAACCTCA 100 279
CCO40_RS01120  236726 ..  236746 -  -6.9  -3.14132   GCTGCGCCTTATCAA            GCCTACA CCGTACC TGTAGGC            CTGGTAAGCGTAGCG  59 68
CCO40_RS01080  226635 ..  226653 - -14.6  -4.03204   GACCAAATTCAGAAA             CCCTGCTC AAT GAGCAGGG             TTTTTTTGTATCGGA 100 141
         tag NONE
CCO40_RS01020  215997 ..  216036 -  -2.9  -3.34716   CCATCCGCTAAAAAC GGCCA-GCG-GCAAAATCG AAAT CTATTCTGCGCGCATTGCC  AGCTATGGTTACGCG  47 504
CCO40_RS01010  213201 ..  213223 -  -6.9  -4.54727   CTCCGTAAATCAAAA           GGTAAGCGC GGCAT GCGCCAACC           GGAACAGGCTTATTA  77 200
        ghrB  212159 ..  212199 -  -7.8  -2.79098   GCGACCCAGTAATGA CAGTCTGCCCGATAAGCGC AAGCCA GCGCTTATCGGGC---CTG TAGCGTTATCCCGCC  60 31
CCO40_RS00995  210675 ..  210693 - -10.3  -4.07687   ATCGGGCGGGGAAAA             CGGTCCT TACGC AGGACCG             TTAAAAACAGAAAGG  82 49
        cspA  210172 ..  210191 - -11.4  -6.09888   TTGGAATAAAAAAAA            TCCCCGCC ATCA GGCAGGGA             TTCAAAATGCTGAGC 100 50
        cueP  209317 ..  209339 -    -7  -5.72622   GCCAGAAACAAAAAA           GAGCCCATGT ATT AAATGGACTC           TTTCGCTGATGCCTC 100 189
CCO40_RS00945  202480 ..  202497 -  -9.9  -3.22774   TACAGTGATGATGAA             TGATGGC CGGA GCCATCA              TTGTCGTTTAGCTAA  72 33
CCO40_RS00925  197176 ..  197202 -  -2.4  -3.99374   GCGTAGTAACAATAA        CCTGTTCG-GCA TGAAG TGCACGAA-AGG        GCGTTGTACCAATAC  54 360
CCO40_RS00915  194189 ..  194201 -  -3.3   -3.9398   CCATAACGCTACAAA                TGGCG GGG CGCAA                ATGGGGGTCAGGCGG  55 133
        avtA  192469 ..  192487 -  -2.3   -3.3375   AGGAACAGCAGAATA            GCGCGGCG GTGA CGACG-GC             GGACTTTGTGCCGCG  45 423
        yiaK NONE
CCO40_RS00890  189762 ..  189772 -  -2.4   -4.4009   CTCTATTTTATAAAA                 CGTC TAT GGCG                 ACTTTTACGACTATT  59 7
CCO40_RS00885 NONE
        yiaM  188174 ..  188203 -    -2  -2.92896   AGCAGAGAAATATCA       CCACGGCCATGA TTAGGC TCCTTGCTGTGG        TTGTTGAAAGGAATC  41 8
        yiaN NONE
CCO40_RS00870 NONE
CCO40_RS00865 NONE
        ulaD NONE
CCO40_RS00855 NONE
        araD  181695 ..  181711 -  -4.4  -4.48987   CCGGCAGAATGAAAA             CGCCGAG GCCG CT-GGCG              TGTCGCTGGCCTGGA  68 521
CCO40_RS00840  178678 ..  178714 -  -8.8  -3.08679   TGTTCTGACGCAAGA   GGTAATGCCCGAT-GGCG CTG CGCTTATCGGGC-CTACC   GCATTGATATCAGCC  66 323
CCO40_RS00830  175610 ..  175631 -  -7.3  -4.13945   ACCGCGATCGTAAAA           GATCGGTAC TATC GTAACGATC            GGATTGTCGCTTTCG  74 476
        mtlA  167682 ..  167702 - -12.6  -3.17075   TTCCCCTCAACCTAA            CCCTCTCC ACAAG GGAGAGGG            TATCGCCTTCATATT  86 163
        mtlD NONE
        mtlR  165480 ..  165504 -  -7.4  -2.72991   TTACATCGCTAATTA          TTTTATTATC TCATT GATAATAAAA          TATTTTTTTCGAAAG  58 393
CCO40_RS00780  164634 ..  164658 -    -5  -3.85296   GTTAGAATGAAAACA         TTCGTCGCTTC TATA GAAGCG-CGCA          AAAACCCGACGTTAT  59 368
CCO40_RS00775 NONE
        sadA  159351 ..  159373 - -16.4  -4.30448   AAAGGGAAGTGAAAA           GGCAATGGCA TGA TGCCATTGCC           TTTGATGTCGGGAGT 100 53
        lldP  157450 ..  157461 -  -2.2  -2.86271   TTGGCATCACAATCA                CGGA ATCA TCCA                 GGTTAAAACATAGGC  41 11
        lldR NONE
        lldD  155464 ..  155483 -  -4.8  -2.73268   AATAGCAGAAATTTA            CCGGGCTC TCAC GCGCCAGG             CGTTCAGGCGGCATC  49 29
        trmL  154947 ..  154962 -  -4.8  -3.08798   ATCCGGCATTGAATA              TATTAC GACC GTAATA               CCGCGCCGGAGTATC  51 12
CCO40_RS00740  152336 ..  152354 - -11.7   -3.1352   CTGTAAGGTAAGAGA             GGCGGGA CGGAT TCCCGCC             AGTCGGGTTAAGGGC  83 33
CCO40_RS00735  150918 ..  150951 -  -8.3  -5.32944   GGTACAACTAAAAAA    CGCTGTTCCGATGGA GTGCAA TCC--CGGAACAGCG     GAGCGAAGAATTCGC 100 52
        gpmM NONE
        envC NONE
CCO40_RS00695  143559 ..  143577 -  -4.5  -3.57144   GTCCGCAGCGCGAAA             GCAGCTT ATCAG ACGCTGC             TCTGGTCCTTCCGGC  52 95
        rfaD NONE
        rfaF NONE
        rfaC NONE
        rfaL  135475 ..  135504 - -14.4  -4.21194   CCTGATGATGGAAAA       CGCGCTGATACC GTAATA AGTATCAGCGCG        TTTTTTTATCTATTT 100 31
        waaA NONE
        coaD  123886 ..  123899 -  -4.5  -4.48987   CTGTCAGAAGTAAAA               TGCCA GGCC CGGCA                AGGTAGGAAACTTAT  69 37
       coaBC NONE
         dut  119784 ..  119804 -    -9  -3.33492   GCACCCACGCTATAA            CCGCAAAC TCAGC GCTTGCGG            CAGTATTATGACGTT  71 58
        slmA  118971 ..  118987 -  -2.2  -3.36991   CATTACGCTGAAAGA              CCTGAT TGCCT ATCTGG              AAGAAAAACCTGATA  45 171
CCO40_RS00550  116582 ..  116611 -   -10  -3.93695   CGTACTACCGATAAA       CGCGAGAGCCCGC ATAAG GCGGGCTCT-GTG       ACATATTGAGCGCCA  82 44
CCO40_RS00540  114688 ..  114706 -  -8.8  -4.27465   GATAATTTAAAAGAA             CGGCGC CCTGGAC GCGCCG             CCGGTGAGTTATTTC  80 42
CCO40_RS00535  113809 ..  113836 -  -9.2   -4.3467   ATCCGCAGATCAAAA        CGCTGAGCAG ATGGCTGG CTGCTCAGCA         TATTCCCGGATTTGG  85 44
         gmk  111281 ..  111296 -  -3.3  -2.78816   TGACTGGGCATGATA              CTGAA AGTGGG TTCAG               TCTGCCAACAATTTG  43 22
        rpoZ  110946 ..  110956 -  -2.4  -2.83082   TCAAACAGATACAAG                 GGCG ACC CGCT                 TTGTGATTAACGACG  40 32
        spoT NONE
        trmH NONE
        recG  105886 ..  105906 -  -7.5  -3.06133   TAACCCGGCAGTTAA            CGTCGGAGA TGA TCCTCGACG            GGGTGCAGAAGGCGG  57 171
        xanP  102341 ..  102360 - -10.7  -2.63479   AAGAGCGTTACAGCA            GCGGCGA ATCGTG TCGCCGC             CGCAGGGTTTTTACG  74 36
CCO40_RS00485  100121 ..  100143 -  -4.8  -3.17146   GTGCGTGACAATACA           CTACTGGCGC TGG GCAACAATAG           CCAGAAGCCCGATTA  49 423
CCO40_RS00470   96291 ..   96301 -    -4  -2.96712   AGTCTTAATAATAAG                 CAAA TAC TTTG                 TCCCGAAATAGAGGA  46 68
CCO40_RS22405 NONE
CCO40_RS00455   93776 ..   93797 -  -2.9  -4.09685   TCCCACGTTCGAAAA           CATCCTGTT CCTT AACCGGAGG            TTGCGGATCGACGCC  56 43
CCO40_RS00445   92091 ..   92108 -  -5.5   -4.3739   TACGCCTGGATAAAA             CCGCCAT ATTC ACGACGG              TATCATGCAATCACA  70 161
CCO40_RS00435 NONE
        misL   87351 ..   87369 - -14.6  -4.07568   CGTTTCCGGGTAAAA             GCCGCTGA AGA TCAGCGGC             TCTGTTGTTACCTGA 100 42
CCO40_RS00410   84452 ..   84472 - -14.1  -4.43911   AAATGGCAAGTAAAA            TAGCCCCAT TAA ATGGGGCTA            TTTAGCCTCTTCAGG 100 48
CCO40_RS00385   77938 ..   77965 -  -9.2  -2.71763   CGGATAACGAGATTA        TGCAGCATCGACG TAT CG-CGATGCTGGA        ACTGGTACAAAAGCA  60 480
CCO40_RS00340   69110 ..   69124 -    -2  -3.21395   ATTCGCTCCAGAATA               CGCGCT TTT AGCGAA               CAGAAACCGGTTACA  44 78
CCO40_RS00335   67279 ..   67292 -  -3.7   -4.0896   AAACGTTCGGTAAAA               CTGGC GCTG GCCGG                TGCGCCGCTGCTACT  60 422
CCO40_RS00325 NONE
CCO40_RS00320   65318 ..   65332 -  -2.1  -4.63526   ATAATGACAAAGAAA               TTCCC ATTAA AGGAA               TGATGAGTATTTTGG  65 247
CCO40_RS00240   48971 ..   48987 -  -2.2  -3.54158   GATTTGAATAACGAA              GCCG ATCCGCAGG CGGC              GTTGCAGGCTATCAT  47 442
        tisB   46448 ..   46469 - -17.3  -3.69354   GCGGATAAGGTGAAA           GGGGAGCGG TTGC CCGCTCCCC            TTCGGTGCGGCTTGA 100 48
CCO40_RS00210   45486 ..   45505 -  -7.8  -4.92385   GATATGTAAACAAAA            GCGGCAAC AAAT GTTGCCGA             GAATGTGTTACGTCT  87 59
        emrD   44122 ..   44142 - -15.4  -3.66178   CGCCGGAATGTGAAA            CGCCCGGC AAAAA GCCGGGCG            AGGGAAACGTTAAAC 100 35
        dsdX NONE
        dsdA   39126 ..   39163 -  -5.6  -3.07816   GCGGGATTTACTGAA   GCAGCATCGCTCGCC GGAGGAGTT GATG-GCGATGCTGC   GTTAGCCTCACAGGC  52 112
CCO40_RS00150   34015 ..   34044 - -10.7   -3.6707   ATGGAAGAGGTGAAA       GGGTTCCGTCAGC TATG GGTGACGGAAACC        GGGCGATAAATCAGG  83 36
        torR   19260 ..   19294 -   -10  -3.15663   AGGCAGCGCCATCAA     CATTGTGGATATCGCC TGG GGCGATAACGACATTG     AAGTGCAGAGAAACT  67 399
        torS   15440 ..   15471 -  -3.6  -5.03747   AAACTGGTGAAAAAA      GGCTTCTCGCTGGGC GTG GCGC-GCAAAACGCC      GATTATTTGCGGTTT  77 394
CCO40_RS00035 NONE
CCO40_RS00030    7167 ..    7195 - -11.7  -2.54801   GACTCGCAAATACAG        GGTGTCTGCCTGC GGC GCAGGCAGACAGT        TGGCTTATTTTACGG  79 30
CCO40_RS00025    6140 ..    6155 -  -5.4  -3.68988   CTTTATCGAAGAGAA              CGCC-CT GAA AGCGGCG              AACATCGATATTTAA  59 59
